Query 011163
Match_columns 492
No_of_seqs 178 out of 2455
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1.1E-77 2.4E-82 624.8 49.6 483 3-490 476-968 (977)
2 PRK14099 glycogen synthase; Pr 100.0 3E-69 6.5E-74 551.2 48.2 463 7-490 2-480 (485)
3 PRK14098 glycogen synthase; Pr 100.0 1.3E-68 2.8E-73 547.0 49.6 470 5-490 2-487 (489)
4 TIGR02095 glgA glycogen/starch 100.0 1.1E-67 2.4E-72 544.1 48.7 465 9-489 1-473 (473)
5 PRK00654 glgA glycogen synthas 100.0 2.6E-67 5.6E-72 538.9 47.8 459 9-491 1-465 (466)
6 PLN02316 synthase/transferase 100.0 1.4E-65 3E-70 544.3 48.4 438 4-491 583-1036(1036)
7 cd03791 GT1_Glycogen_synthase_ 100.0 9.2E-63 2E-67 509.3 49.1 467 10-488 1-476 (476)
8 COG0297 GlgA Glycogen synthase 100.0 6.2E-61 1.3E-65 476.7 42.3 468 9-491 1-480 (487)
9 TIGR02468 sucrsPsyn_pln sucros 100.0 1.9E-46 4.1E-51 397.3 34.4 446 4-489 165-671 (1050)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 1.7E-45 3.6E-50 375.3 38.0 405 9-486 1-438 (439)
11 TIGR03449 mycothiol_MshA UDP-N 100.0 6.6E-45 1.4E-49 368.7 35.0 388 11-490 1-403 (405)
12 TIGR02470 sucr_synth sucrose s 100.0 1.1E-44 2.3E-49 377.3 36.3 428 7-486 254-745 (784)
13 PLN02871 UDP-sulfoquinovose:DA 100.0 2.5E-44 5.4E-49 369.5 36.9 378 6-490 56-436 (465)
14 TIGR02149 glgA_Coryne glycogen 100.0 1.2E-43 2.5E-48 357.5 37.7 374 9-489 1-387 (388)
15 PRK10307 putative glycosyl tra 100.0 9.2E-44 2E-48 360.8 34.6 394 9-490 1-409 (412)
16 PLN00142 sucrose synthase 100.0 1.2E-43 2.5E-48 369.4 31.2 425 9-485 280-767 (815)
17 cd03796 GT1_PIG-A_like This fa 100.0 1.7E-42 3.7E-47 349.7 35.8 361 10-490 1-369 (398)
18 cd04962 GT1_like_5 This family 100.0 1.2E-41 2.5E-46 340.7 37.1 366 9-489 1-371 (371)
19 PRK15484 lipopolysaccharide 1, 100.0 1.7E-41 3.8E-46 339.2 35.6 357 10-489 4-378 (380)
20 PRK15427 colanic acid biosynth 100.0 6.2E-41 1.3E-45 337.3 35.9 278 135-489 116-406 (406)
21 TIGR02094 more_P_ylases alpha- 100.0 6.2E-40 1.3E-44 337.9 40.0 460 11-486 1-598 (601)
22 cd03818 GT1_ExpC_like This fam 100.0 1.4E-39 3E-44 328.3 35.6 372 10-481 1-394 (396)
23 TIGR03088 stp2 sugar transfera 100.0 1.5E-39 3.3E-44 325.9 35.4 361 9-489 2-373 (374)
24 cd03805 GT1_ALG2_like This fam 100.0 1.4E-39 3.1E-44 328.2 31.0 375 9-480 1-391 (392)
25 KOG1111 N-acetylglucosaminyltr 100.0 2.9E-40 6.3E-45 303.0 22.3 360 9-491 1-369 (426)
26 cd03800 GT1_Sucrose_synthase T 100.0 1.5E-38 3.3E-43 321.1 36.1 382 10-481 1-396 (398)
27 cd03792 GT1_Trehalose_phosphor 100.0 4.6E-39 1E-43 322.0 31.9 359 10-489 1-372 (372)
28 PRK10125 putative glycosyl tra 100.0 8.5E-39 1.8E-43 320.6 32.7 374 9-489 1-405 (405)
29 PRK15179 Vi polysaccharide bio 100.0 2.6E-38 5.7E-43 330.4 36.2 385 2-487 274-692 (694)
30 PLN02846 digalactosyldiacylgly 100.0 7.8E-39 1.7E-43 318.9 30.7 383 6-487 2-390 (462)
31 cd03802 GT1_AviGT4_like This f 100.0 3.5E-38 7.6E-43 310.9 34.0 330 9-487 1-335 (335)
32 cd04955 GT1_like_6 This family 100.0 1.2E-37 2.5E-42 310.6 34.9 356 10-487 1-363 (363)
33 cd03819 GT1_WavL_like This fam 100.0 2.4E-37 5.2E-42 307.5 34.1 340 22-477 7-355 (355)
34 cd03813 GT1_like_3 This family 100.0 1.5E-37 3.3E-42 319.5 29.3 292 136-487 172-475 (475)
35 cd03795 GT1_like_4 This family 100.0 1.5E-36 3.3E-41 301.7 34.7 351 10-478 1-357 (357)
36 cd05844 GT1_like_7 Glycosyltra 100.0 5.9E-37 1.3E-41 306.3 31.4 353 10-484 1-366 (367)
37 PRK09922 UDP-D-galactose:(gluc 100.0 3.2E-37 6.9E-42 306.9 28.6 346 9-490 1-357 (359)
38 cd03825 GT1_wcfI_like This fam 100.0 1.4E-36 3E-41 302.9 31.0 348 9-489 1-365 (365)
39 cd04951 GT1_WbdM_like This fam 100.0 5.7E-36 1.2E-40 298.0 35.2 354 10-488 1-360 (360)
40 PRK15490 Vi polysaccharide bio 100.0 7.6E-36 1.7E-40 297.9 34.8 292 125-489 270-576 (578)
41 cd03816 GT1_ALG1_like This fam 100.0 1.3E-35 2.9E-40 300.1 33.7 371 9-480 4-409 (415)
42 cd03799 GT1_amsK_like This is 100.0 1.6E-35 3.5E-40 294.2 33.0 342 10-480 1-354 (355)
43 cd03814 GT1_like_2 This family 100.0 1.5E-35 3.3E-40 294.6 32.2 360 10-487 1-364 (364)
44 cd04299 GT1_Glycogen_Phosphory 100.0 7.1E-35 1.5E-39 304.9 37.9 461 10-489 87-691 (778)
45 cd03812 GT1_CapH_like This fam 100.0 1.8E-35 3.8E-40 294.4 31.5 349 10-478 1-353 (358)
46 cd03821 GT1_Bme6_like This fam 100.0 2.6E-35 5.7E-40 293.4 32.7 365 10-481 1-373 (375)
47 cd03822 GT1_ecORF704_like This 100.0 9.9E-35 2.1E-39 289.2 34.9 355 10-487 1-366 (366)
48 cd03807 GT1_WbnK_like This fam 100.0 6.8E-35 1.5E-39 289.3 33.2 358 10-487 1-365 (365)
49 cd03823 GT1_ExpE7_like This fa 100.0 1.2E-34 2.7E-39 287.4 33.2 358 10-488 1-359 (359)
50 cd03794 GT1_wbuB_like This fam 100.0 1E-34 2.2E-39 290.7 32.8 383 10-481 1-393 (394)
51 cd03817 GT1_UGDG_like This fam 100.0 1.3E-34 2.8E-39 288.5 32.7 366 10-488 1-373 (374)
52 cd03801 GT1_YqgM_like This fam 100.0 1.5E-33 3.3E-38 279.4 37.1 368 10-487 1-374 (374)
53 cd03809 GT1_mtfB_like This fam 100.0 6.6E-35 1.4E-39 290.3 27.0 358 10-481 1-363 (365)
54 PLN02949 transferase, transfer 100.0 4.7E-34 1E-38 289.2 32.5 232 215-491 214-459 (463)
55 cd03820 GT1_amsD_like This fam 100.0 1.8E-33 3.8E-38 277.0 32.9 339 10-481 1-346 (348)
56 cd03806 GT1_ALG11_like This fa 100.0 6.3E-33 1.4E-37 280.4 34.2 385 18-479 6-418 (419)
57 cd03808 GT1_cap1E_like This fa 100.0 9.2E-33 2E-37 273.1 34.7 351 10-481 1-357 (359)
58 cd03798 GT1_wlbH_like This fam 100.0 1.1E-32 2.5E-37 273.9 35.5 370 11-489 1-377 (377)
59 cd03793 GT1_Glycogen_synthase_ 100.0 9.2E-33 2E-37 276.0 29.3 433 23-490 14-588 (590)
60 TIGR03087 stp1 sugar transfera 100.0 1.3E-33 2.9E-38 284.8 22.9 380 11-487 1-395 (397)
61 PLN02501 digalactosyldiacylgly 100.0 3.3E-31 7E-36 267.2 32.3 372 8-484 322-705 (794)
62 TIGR02918 accessory Sec system 100.0 5.5E-32 1.2E-36 276.7 26.6 279 135-489 209-500 (500)
63 cd03811 GT1_WabH_like This fam 100.0 2.8E-31 6.1E-36 261.6 29.9 337 10-468 1-344 (353)
64 PLN02275 transferase, transfer 100.0 3.6E-31 7.9E-36 264.1 30.0 327 25-454 15-371 (371)
65 cd04946 GT1_AmsK_like This fam 100.0 3.4E-31 7.3E-36 267.3 28.1 219 214-481 176-405 (407)
66 cd03804 GT1_wbaZ_like This fam 100.0 2.1E-31 4.5E-36 264.7 25.6 204 214-481 146-350 (351)
67 PHA01630 putative group 1 glyc 100.0 1.5E-30 3.3E-35 253.3 23.3 216 215-488 87-330 (331)
68 PF08323 Glyco_transf_5: Starc 100.0 7.4E-32 1.6E-36 251.4 12.7 232 10-250 1-244 (245)
69 PHA01633 putative glycosyl tra 100.0 2.5E-28 5.5E-33 234.7 29.1 220 217-481 88-333 (335)
70 cd04949 GT1_gtfA_like This fam 100.0 3E-29 6.5E-34 251.2 22.9 212 218-480 154-371 (372)
71 PRK00726 murG undecaprenyldiph 100.0 3.8E-27 8.3E-32 234.5 31.3 340 9-485 2-354 (357)
72 cd03785 GT1_MurG MurG is an N- 100.0 4.8E-27 1E-31 233.2 30.4 334 10-478 1-348 (350)
73 cd03788 GT1_TPS Trehalose-6-Ph 100.0 1.2E-27 2.7E-32 243.7 25.5 312 120-481 114-455 (460)
74 TIGR02400 trehalose_OtsA alpha 100.0 1.6E-26 3.4E-31 233.7 26.3 307 120-481 110-450 (456)
75 TIGR01133 murG undecaprenyldip 100.0 8E-26 1.7E-30 224.3 29.6 323 9-469 1-334 (348)
76 PRK13609 diacylglycerol glucos 99.9 3.3E-25 7.2E-30 222.4 29.1 366 7-491 3-374 (380)
77 PRK05749 3-deoxy-D-manno-octul 99.9 1.4E-23 3E-28 213.7 27.2 281 136-489 123-420 (425)
78 PLN03063 alpha,alpha-trehalose 99.9 1.3E-23 2.8E-28 225.1 26.7 318 121-489 131-478 (797)
79 PF00534 Glycos_transf_1: Glyc 99.9 6.2E-24 1.3E-28 188.6 18.3 166 292-469 2-171 (172)
80 KOG0853 Glycosyltransferase [C 99.9 2.6E-23 5.7E-28 204.3 23.8 395 7-487 33-466 (495)
81 PRK14501 putative bifunctional 99.9 2.3E-23 4.9E-28 223.9 24.8 317 120-489 116-463 (726)
82 PLN02605 monogalactosyldiacylg 99.9 1.1E-22 2.3E-27 203.9 25.5 270 126-481 91-375 (382)
83 cd04950 GT1_like_1 Glycosyltra 99.9 4.1E-22 9E-27 199.1 28.8 265 134-486 99-369 (373)
84 PRK13608 diacylglycerol glucos 99.9 4.3E-22 9.3E-27 199.9 21.7 226 220-490 146-373 (391)
85 cd01635 Glycosyltransferase_GT 99.9 5.5E-20 1.2E-24 170.2 24.5 117 312-438 109-229 (229)
86 TIGR00236 wecB UDP-N-acetylglu 99.8 1.4E-19 3.1E-24 180.5 23.1 276 125-481 76-361 (365)
87 TIGR02398 gluc_glyc_Psyn gluco 99.8 1.4E-18 3.1E-23 174.7 27.5 178 255-458 249-450 (487)
88 PRK00025 lpxB lipid-A-disaccha 99.8 1.3E-18 2.7E-23 174.8 26.7 200 218-467 131-352 (380)
89 PF05693 Glycogen_syn: Glycoge 99.8 4E-19 8.6E-24 177.1 20.5 428 23-489 9-582 (633)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 1.2E-17 2.7E-22 166.6 23.8 259 125-464 78-345 (363)
91 COG0438 RfaG Glycosyltransfera 99.8 1.5E-17 3.3E-22 163.3 22.1 222 222-490 151-378 (381)
92 PRK09814 beta-1,6-galactofuran 99.8 4.7E-17 1E-21 159.9 22.2 235 136-469 62-311 (333)
93 PLN03064 alpha,alpha-trehalose 99.8 1.9E-16 4.1E-21 169.2 27.2 307 122-481 216-555 (934)
94 KOG1387 Glycosyltransferase [C 99.7 2E-14 4.4E-19 132.4 25.7 296 135-489 148-459 (465)
95 TIGR00215 lpxB lipid-A-disacch 99.6 1.1E-13 2.3E-18 138.5 24.6 261 125-467 79-362 (385)
96 PF13692 Glyco_trans_1_4: Glyc 99.6 5.3E-15 1.1E-19 125.5 11.6 130 307-456 2-135 (135)
97 TIGR03713 acc_sec_asp1 accesso 99.6 3.3E-14 7.1E-19 145.9 18.5 163 308-485 320-518 (519)
98 PF13579 Glyco_trans_4_4: Glyc 99.6 1.1E-14 2.4E-19 126.8 9.7 160 25-262 1-160 (160)
99 PF13439 Glyco_transf_4: Glyco 99.5 3.6E-14 7.8E-19 125.8 11.3 177 11-269 1-177 (177)
100 KOG2941 Beta-1,4-mannosyltrans 99.5 3.1E-11 6.6E-16 111.8 28.3 388 7-481 11-435 (444)
101 PRK12446 undecaprenyldiphospho 99.4 1E-09 2.2E-14 108.4 31.0 166 294-481 174-345 (352)
102 PF09314 DUF1972: Domain of un 99.3 8.6E-11 1.9E-15 102.8 15.7 179 10-264 3-185 (185)
103 PRK10117 trehalose-6-phosphate 99.3 1.9E-09 4.1E-14 108.0 26.7 281 122-457 108-420 (474)
104 PF13524 Glyco_trans_1_2: Glyc 99.3 1.1E-11 2.4E-16 97.4 7.9 87 386-481 1-90 (92)
105 PF00982 Glyco_transf_20: Glyc 99.3 1E-09 2.2E-14 111.3 23.8 282 122-457 126-441 (474)
106 COG0707 MurG UDP-N-acetylgluco 99.3 2.5E-08 5.5E-13 97.6 32.5 159 307-480 183-346 (357)
107 TIGR02919 accessory Sec system 99.2 2.3E-10 5.1E-15 114.9 16.5 127 323-464 291-419 (438)
108 COG0058 GlgP Glucan phosphoryl 99.2 9.8E-09 2.1E-13 106.5 23.7 412 19-442 110-632 (750)
109 COG0380 OtsA Trehalose-6-phosp 99.1 3.2E-08 6.9E-13 98.8 26.4 285 120-457 130-446 (486)
110 PLN02205 alpha,alpha-trehalose 99.1 2.6E-08 5.7E-13 107.9 27.2 266 139-457 203-518 (854)
111 cd04300 GT1_Glycogen_Phosphory 99.0 2.6E-07 5.6E-12 97.5 29.0 220 211-440 407-682 (797)
112 PF13477 Glyco_trans_4_2: Glyc 99.0 1.5E-08 3.3E-13 86.1 15.0 137 10-229 1-139 (139)
113 KOG3742 Glycogen synthase [Car 99.0 1.5E-09 3.3E-14 103.6 9.4 104 378-485 495-609 (692)
114 TIGR03568 NeuC_NnaA UDP-N-acet 98.9 1.2E-06 2.5E-11 87.2 26.4 270 125-481 83-361 (365)
115 PRK14986 glycogen phosphorylas 98.8 2.2E-07 4.7E-12 97.9 17.9 220 211-440 420-695 (815)
116 PRK14985 maltodextrin phosphor 98.7 2.8E-07 6.1E-12 96.7 15.9 219 212-440 407-681 (798)
117 TIGR02093 P_ylase glycogen/sta 98.7 1.4E-07 2.9E-12 99.2 12.8 220 211-440 404-679 (794)
118 TIGR03492 conserved hypothetic 98.6 3.2E-05 7E-10 77.7 24.7 147 309-467 208-375 (396)
119 cd03784 GT1_Gtf_like This fami 98.6 1.9E-05 4.2E-10 79.8 23.4 133 307-464 240-379 (401)
120 PF00343 Phosphorylase: Carboh 98.5 7E-06 1.5E-10 85.6 18.8 221 210-440 320-596 (713)
121 PF04007 DUF354: Protein of un 98.5 4.8E-05 1E-09 73.8 23.2 297 9-454 1-308 (335)
122 COG3914 Spy Predicted O-linked 98.5 0.00012 2.7E-09 73.4 25.4 179 296-489 421-614 (620)
123 TIGR03590 PseG pseudaminic aci 98.4 0.00019 4.2E-09 68.5 25.1 96 308-415 172-268 (279)
124 PF13844 Glyco_transf_41: Glyc 98.4 9.8E-06 2.1E-10 81.2 15.4 183 295-489 275-467 (468)
125 PF13528 Glyco_trans_1_3: Glyc 98.4 0.00012 2.6E-09 71.5 22.6 122 307-453 193-317 (318)
126 PF00862 Sucrose_synth: Sucros 98.4 4.2E-06 9E-11 82.7 11.8 137 10-177 274-435 (550)
127 COG0763 LpxB Lipid A disacchar 98.3 0.00012 2.6E-09 70.6 20.9 160 291-465 174-353 (381)
128 PF02684 LpxB: Lipid-A-disacch 98.3 0.00063 1.4E-08 67.1 24.9 155 292-462 172-346 (373)
129 PF02350 Epimerase_2: UDP-N-ac 98.2 0.00022 4.8E-09 70.2 21.4 276 125-481 57-341 (346)
130 COG1519 KdtA 3-deoxy-D-manno-o 98.2 0.00039 8.4E-09 67.9 21.8 213 213-469 169-399 (419)
131 PRK01021 lpxB lipid-A-disaccha 98.1 0.0024 5.2E-08 66.0 25.1 158 292-466 400-581 (608)
132 TIGR00661 MJ1255 conserved hyp 98.0 0.0012 2.5E-08 64.7 20.7 85 364-456 229-314 (321)
133 COG1817 Uncharacterized protei 97.6 0.039 8.4E-07 51.8 22.9 140 294-457 171-315 (346)
134 PF12000 Glyco_trans_4_3: Gkyc 97.6 0.0012 2.5E-08 57.4 12.3 42 215-268 129-170 (171)
135 COG0381 WecB UDP-N-acetylgluco 97.6 0.036 7.7E-07 54.0 23.1 154 307-480 205-363 (383)
136 PF11997 DUF3492: Domain of un 97.5 0.00069 1.5E-08 63.9 9.5 43 9-52 1-43 (268)
137 TIGR01426 MGT glycosyltransfer 97.3 0.0079 1.7E-07 60.6 15.4 138 306-463 225-366 (392)
138 COG4641 Uncharacterized protei 97.0 0.066 1.4E-06 51.8 17.8 184 253-487 160-360 (373)
139 PRK14089 ipid-A-disaccharide s 96.8 0.2 4.3E-06 49.2 19.9 91 308-414 169-261 (347)
140 COG4671 Predicted glycosyl tra 96.7 0.52 1.1E-05 45.3 20.4 97 351-457 266-366 (400)
141 COG1819 Glycosyl transferases, 96.4 0.094 2E-06 52.9 15.0 159 306-488 237-401 (406)
142 PF08288 PIGA: PIGA (GPI ancho 96.2 0.021 4.5E-07 42.9 6.6 38 135-176 48-85 (90)
143 TIGR02195 heptsyl_trn_II lipop 95.9 0.12 2.5E-06 50.9 12.6 115 291-414 160-277 (334)
144 COG3660 Predicted nucleoside-d 95.9 1.4 3.1E-05 40.5 22.2 114 294-415 151-273 (329)
145 PRK02797 4-alpha-L-fucosyltran 95.8 0.46 1E-05 45.1 14.8 159 312-489 150-317 (322)
146 PRK10422 lipopolysaccharide co 95.7 0.19 4.1E-06 49.8 13.0 102 307-414 184-288 (352)
147 KOG1050 Trehalose-6-phosphate 95.4 1.7 3.8E-05 46.8 19.4 185 254-463 239-447 (732)
148 PHA03392 egt ecdysteroid UDP-g 95.4 0.21 4.5E-06 52.0 12.3 134 307-464 297-440 (507)
149 PLN02448 UDP-glycosyltransfera 95.3 0.35 7.6E-06 49.8 13.6 144 307-468 275-428 (459)
150 PF07429 Glyco_transf_56: 4-al 95.2 0.54 1.2E-05 45.3 13.3 103 312-415 189-297 (360)
151 PF01075 Glyco_transf_9: Glyco 95.1 0.14 2.9E-06 47.9 9.3 102 307-414 106-209 (247)
152 TIGR02201 heptsyl_trn_III lipo 95.0 0.4 8.7E-06 47.3 12.7 101 308-414 183-286 (344)
153 cd03789 GT1_LPS_heptosyltransf 94.3 0.42 9E-06 45.6 10.6 98 309-414 124-224 (279)
154 PF04101 Glyco_tran_28_C: Glyc 94.1 0.024 5.3E-07 49.5 1.6 95 364-466 55-154 (167)
155 PLN02562 UDP-glycosyltransfera 94.1 0.79 1.7E-05 47.0 12.8 140 307-462 274-419 (448)
156 PRK10916 ADP-heptose:LPS hepto 93.9 1.4 2.9E-05 43.6 13.8 114 292-414 167-287 (348)
157 COG0859 RfaF ADP-heptose:LPS h 93.7 0.61 1.3E-05 45.8 10.8 98 308-414 177-277 (334)
158 PLN03004 UDP-glycosyltransfera 93.6 1.7 3.7E-05 44.4 14.0 142 307-460 271-428 (451)
159 PF10087 DUF2325: Uncharacteri 93.5 0.22 4.9E-06 39.0 5.9 80 339-423 2-89 (97)
160 PF06258 Mito_fiss_Elm1: Mitoc 93.3 8.4 0.00018 37.3 17.9 117 292-415 134-257 (311)
161 TIGR02193 heptsyl_trn_I lipopo 93.2 1.1 2.3E-05 43.7 11.6 98 308-414 181-280 (319)
162 PF11440 AGT: DNA alpha-glucos 92.8 8.3 0.00018 36.0 21.6 145 311-456 187-353 (355)
163 PRK10964 ADP-heptose:LPS hepto 92.4 1.5 3.2E-05 42.8 11.2 98 308-414 180-279 (322)
164 PLN02670 transferase, transfer 92.2 3.4 7.3E-05 42.6 13.8 83 366-457 341-430 (472)
165 PF04464 Glyphos_transf: CDP-G 92.1 1.9 4.2E-05 42.9 11.8 196 216-461 129-341 (369)
166 PLN02210 UDP-glucosyl transfer 92.0 3.1 6.7E-05 42.7 13.3 137 307-458 270-417 (456)
167 PLN02764 glycosyltransferase f 91.6 4.1 8.9E-05 41.7 13.6 148 306-468 257-420 (453)
168 PLN03007 UDP-glucosyltransfera 91.2 4.8 0.0001 41.7 14.0 139 306-457 285-441 (482)
169 PF01975 SurE: Survival protei 91.2 0.28 6E-06 44.0 4.2 39 9-54 1-39 (196)
170 PLN02208 glycosyltransferase f 91.0 4.2 9.1E-05 41.6 13.0 149 307-468 252-414 (442)
171 PF00201 UDPGT: UDP-glucoronos 90.9 2.3 5E-05 44.3 11.5 135 306-464 276-417 (500)
172 PLN02173 UDP-glucosyl transfer 90.7 4.3 9.4E-05 41.5 12.8 145 307-467 265-418 (449)
173 PLN02410 UDP-glucoronosyl/UDP- 90.6 4.2 9E-05 41.7 12.6 137 306-458 264-412 (451)
174 PLN00414 glycosyltransferase f 89.4 7.1 0.00015 40.0 13.1 148 306-468 252-415 (446)
175 COG3980 spsG Spore coat polysa 89.3 4.5 9.9E-05 37.9 10.3 139 309-465 161-302 (318)
176 PRK10017 colanic acid biosynth 89.1 16 0.00034 37.2 15.1 134 324-467 261-403 (426)
177 PLN00164 glucosyltransferase; 88.9 6.3 0.00014 40.8 12.5 93 366-467 341-443 (480)
178 PLN02555 limonoid glucosyltran 88.7 10 0.00023 39.2 13.8 148 307-468 278-440 (480)
179 KOG0780 Signal recognition par 88.4 24 0.00052 34.8 14.8 166 312-486 159-340 (483)
180 PF02951 GSH-S_N: Prokaryotic 87.7 0.95 2.1E-05 36.8 4.4 40 9-51 1-40 (119)
181 PLN02152 indole-3-acetate beta 87.4 12 0.00026 38.5 13.2 150 295-458 251-419 (455)
182 PLN02167 UDP-glycosyltransfera 87.2 8.6 0.00019 39.8 12.3 83 364-457 340-435 (475)
183 PLN02534 UDP-glycosyltransfera 87.0 13 0.00029 38.5 13.4 103 307-415 284-390 (491)
184 PLN02863 UDP-glucoronosyl/UDP- 86.2 13 0.00028 38.5 12.9 133 307-454 284-431 (477)
185 PLN02207 UDP-glycosyltransfera 83.3 20 0.00043 37.0 12.6 134 307-455 276-425 (468)
186 PLN02992 coniferyl-alcohol glu 83.0 17 0.00037 37.6 12.0 85 364-457 338-428 (481)
187 PLN02554 UDP-glycosyltransfera 82.7 20 0.00042 37.2 12.5 85 364-459 342-444 (481)
188 COG2910 Putative NADH-flavin r 79.9 2.9 6.2E-05 36.6 4.2 35 9-53 1-35 (211)
189 PF03033 Glyco_transf_28: Glyc 79.8 3.1 6.7E-05 34.6 4.6 23 29-51 13-35 (139)
190 PRK13932 stationary phase surv 79.4 2.9 6.2E-05 39.1 4.5 41 6-54 3-43 (257)
191 TIGR03609 S_layer_CsaB polysac 78.5 32 0.0007 32.9 11.8 86 322-415 190-277 (298)
192 PF01113 DapB_N: Dihydrodipico 78.0 3.6 7.8E-05 33.8 4.3 45 376-422 60-104 (124)
193 PHA03392 egt ecdysteroid UDP-g 77.0 3.6 7.8E-05 42.9 4.9 38 9-51 21-58 (507)
194 PLN03015 UDP-glucosyl transfer 76.3 51 0.0011 34.0 12.8 80 367-455 338-425 (470)
195 PRK13398 3-deoxy-7-phosphohept 75.9 50 0.0011 31.2 11.7 91 321-414 39-141 (266)
196 COG4635 HemG Flavodoxin [Energ 75.2 5.5 0.00012 33.8 4.5 38 9-51 1-38 (175)
197 PF03808 Glyco_tran_WecB: Glyc 74.8 37 0.00081 29.6 10.1 102 318-425 30-141 (172)
198 KOG4626 O-linked N-acetylgluco 74.8 33 0.00072 36.0 10.6 184 295-489 749-941 (966)
199 PRK10037 cell division protein 74.0 4.6 9.9E-05 37.8 4.4 35 9-49 1-37 (250)
200 TIGR00087 surE 5'/3'-nucleotid 72.7 5.3 0.00011 37.1 4.3 38 9-54 1-38 (244)
201 PF05159 Capsule_synth: Capsul 72.5 20 0.00043 33.9 8.4 33 377-414 193-225 (269)
202 PRK09271 flavodoxin; Provision 72.4 7.9 0.00017 33.4 5.2 36 9-49 1-36 (160)
203 PRK00207 sulfur transfer compl 71.7 8.9 0.00019 31.7 5.0 40 9-51 1-41 (128)
204 PRK06249 2-dehydropantoate 2-r 69.1 7.6 0.00017 37.7 4.8 36 5-51 2-37 (313)
205 TIGR01007 eps_fam capsular exo 68.8 7.8 0.00017 34.8 4.5 38 8-51 16-55 (204)
206 PF03358 FMN_red: NADPH-depend 68.3 11 0.00025 31.8 5.3 40 9-51 1-40 (152)
207 CHL00072 chlL photochlorophyll 68.1 6.6 0.00014 37.7 4.1 35 9-51 1-37 (290)
208 CHL00175 minD septum-site dete 68.1 8.5 0.00018 36.6 4.9 44 2-51 7-53 (281)
209 PRK08305 spoVFB dipicolinate s 67.0 13 0.00027 33.3 5.3 36 8-51 5-42 (196)
210 PRK06756 flavodoxin; Provision 66.5 12 0.00027 31.6 5.1 37 9-50 2-38 (148)
211 PF02374 ArsA_ATPase: Anion-tr 66.0 8.4 0.00018 37.2 4.4 36 9-51 1-38 (305)
212 PF06564 YhjQ: YhjQ protein; 66.0 8.8 0.00019 35.6 4.2 37 9-51 1-39 (243)
213 COG1819 Glycosyl transferases, 65.9 6.8 0.00015 39.6 3.9 39 8-52 1-39 (406)
214 PLN00016 RNA-binding protein; 65.3 6.8 0.00015 39.1 3.7 38 9-52 53-90 (378)
215 PRK13933 stationary phase surv 65.0 9.3 0.0002 35.7 4.2 38 9-54 1-38 (253)
216 COG0300 DltE Short-chain dehyd 64.1 13 0.00029 34.9 5.1 38 7-53 4-41 (265)
217 PRK13935 stationary phase surv 63.9 10 0.00022 35.4 4.2 38 9-54 1-38 (253)
218 PRK13934 stationary phase surv 63.6 10 0.00022 35.6 4.2 38 9-54 1-38 (266)
219 TIGR01281 DPOR_bchL light-inde 63.4 9.2 0.0002 36.1 4.1 34 9-50 1-36 (268)
220 PRK00346 surE 5'(3')-nucleotid 62.4 11 0.00024 35.1 4.3 38 9-54 1-38 (250)
221 PF06925 MGDG_synth: Monogalac 62.3 58 0.0013 28.2 8.6 18 221-238 137-154 (169)
222 PF02441 Flavoprotein: Flavopr 61.7 13 0.00029 30.6 4.3 36 9-51 1-36 (129)
223 PF08660 Alg14: Oligosaccharid 61.4 1.1E+02 0.0024 26.6 11.6 29 24-52 7-37 (170)
224 KOG1429 dTDP-glucose 4-6-dehyd 60.6 14 0.0003 34.8 4.4 37 3-49 22-58 (350)
225 COG0496 SurE Predicted acid ph 60.5 12 0.00026 34.7 4.0 38 9-54 1-38 (252)
226 PF03016 Exostosin: Exostosin 60.1 15 0.00032 35.2 5.0 40 376-415 229-268 (302)
227 PLN02166 dTDP-glucose 4,6-dehy 59.7 12 0.00026 38.2 4.4 36 5-50 117-152 (436)
228 PRK11104 hemG protoporphyrinog 59.6 14 0.0003 32.5 4.2 36 9-50 1-36 (177)
229 PF15024 Glyco_transf_18: Glyc 59.4 24 0.00052 36.7 6.3 143 318-481 289-449 (559)
230 TIGR01754 flav_RNR ribonucleot 58.4 19 0.00041 30.1 4.7 34 9-47 1-34 (140)
231 TIGR00696 wecB_tagA_cpsF bacte 57.8 74 0.0016 28.0 8.4 99 321-425 33-140 (177)
232 TIGR01380 glut_syn glutathione 57.6 12 0.00026 36.3 3.8 41 9-52 1-41 (312)
233 cd02032 Bchl_like This family 57.5 13 0.00029 35.0 4.0 35 9-51 1-37 (267)
234 cd01425 RPS2 Ribosomal protein 56.5 1.4E+02 0.003 26.7 10.1 33 382-415 126-158 (193)
235 PRK13869 plasmid-partitioning 56.3 18 0.00038 36.6 4.9 37 8-50 120-158 (405)
236 TIGR03453 partition_RepA plasm 56.2 18 0.00039 36.3 4.9 40 6-51 101-142 (387)
237 PLN02695 GDP-D-mannose-3',5'-e 55.8 17 0.00036 36.3 4.6 37 4-50 17-53 (370)
238 PF03401 TctC: Tripartite tric 55.4 1.1E+02 0.0025 28.8 10.0 151 308-469 79-245 (274)
239 cd06533 Glyco_transf_WecG_TagA 54.4 1.5E+02 0.0032 25.8 10.7 101 318-424 28-138 (171)
240 PRK13236 nitrogenase reductase 53.9 21 0.00045 34.4 4.7 39 5-50 2-42 (296)
241 COG1763 MobB Molybdopterin-gua 53.7 29 0.00062 30.0 5.0 40 8-52 1-40 (161)
242 PRK06703 flavodoxin; Provision 53.2 28 0.00061 29.5 5.0 37 9-50 2-38 (151)
243 CHL00194 ycf39 Ycf39; Provisio 52.8 18 0.00039 35.0 4.2 27 25-51 7-33 (317)
244 PRK05708 2-dehydropantoate 2-r 52.8 19 0.00042 34.7 4.3 33 8-51 2-34 (305)
245 PF02525 Flavodoxin_2: Flavodo 52.5 24 0.00053 31.4 4.7 41 9-51 1-42 (199)
246 COG0716 FldA Flavodoxins [Ener 52.4 27 0.00058 29.7 4.7 36 9-49 2-37 (151)
247 cd02040 NifH NifH gene encodes 52.3 20 0.00044 33.6 4.4 26 25-50 10-37 (270)
248 TIGR01915 npdG NADPH-dependent 52.2 20 0.00043 32.7 4.1 32 9-50 1-32 (219)
249 COG3980 spsG Spore coat polysa 52.0 26 0.00056 33.0 4.7 41 9-51 1-41 (318)
250 TIGR02026 BchE magnesium-proto 51.6 93 0.002 32.4 9.4 36 10-49 1-44 (497)
251 PRK13849 putative crown gall t 51.0 25 0.00055 32.4 4.6 37 9-51 1-39 (231)
252 PRK13232 nifH nitrogenase redu 50.9 20 0.00044 33.9 4.1 25 25-49 10-36 (273)
253 PRK13234 nifH nitrogenase redu 50.6 27 0.00057 33.6 4.9 36 8-50 3-40 (295)
254 TIGR03371 cellulose_yhjQ cellu 49.6 24 0.00053 32.5 4.4 37 9-51 1-39 (246)
255 PRK05246 glutathione synthetas 49.5 19 0.00041 35.0 3.7 42 8-52 1-42 (316)
256 COG2085 Predicted dinucleotide 49.2 23 0.00051 31.9 3.9 29 25-53 7-35 (211)
257 COG2894 MinD Septum formation 49.2 25 0.00055 31.9 4.0 38 10-53 3-42 (272)
258 PRK10360 DNA-binding transcrip 49.0 1.8E+02 0.0038 25.2 11.2 70 383-455 47-117 (196)
259 PRK10840 transcriptional regul 48.9 2E+02 0.0043 25.7 11.7 112 337-455 4-125 (216)
260 PHA02519 plasmid partition pro 48.4 29 0.00063 34.8 4.9 38 6-49 103-142 (387)
261 PRK13931 stationary phase surv 48.4 28 0.0006 32.7 4.4 39 9-54 1-42 (261)
262 TIGR03018 pepcterm_TyrKin exop 47.9 34 0.00073 30.8 4.9 40 6-51 32-74 (207)
263 PF04230 PS_pyruv_trans: Polys 47.8 1.8E+02 0.0038 26.7 10.2 41 370-415 244-284 (286)
264 PRK13185 chlL protochlorophyll 47.4 28 0.0006 32.8 4.4 26 25-50 11-38 (270)
265 TIGR00639 PurN phosphoribosylg 47.2 1.3E+02 0.0028 26.7 8.4 36 9-53 1-38 (190)
266 PRK09739 hypothetical protein; 47.1 50 0.0011 29.5 5.9 41 8-51 3-43 (199)
267 PRK13235 nifH nitrogenase redu 46.7 28 0.00061 32.9 4.4 26 25-50 10-37 (274)
268 PRK09004 FMN-binding protein M 46.6 38 0.00083 28.6 4.7 27 23-49 11-37 (146)
269 PRK12595 bifunctional 3-deoxy- 46.4 2.3E+02 0.0049 28.2 10.7 95 314-414 126-232 (360)
270 COG1090 Predicted nucleoside-d 46.2 20 0.00044 33.7 3.1 31 24-54 4-34 (297)
271 PRK13396 3-deoxy-7-phosphohept 46.1 3.1E+02 0.0066 27.1 12.4 99 310-414 105-215 (352)
272 PRK05723 flavodoxin; Provision 45.3 39 0.00084 28.8 4.6 36 9-49 1-36 (151)
273 PRK13397 3-deoxy-7-phosphohept 45.3 2.6E+02 0.0057 26.1 10.5 99 309-414 18-129 (250)
274 PF00201 UDPGT: UDP-glucoronos 45.2 10 0.00023 39.4 1.3 28 25-52 10-37 (500)
275 PRK07454 short chain dehydroge 45.1 36 0.00079 31.1 4.8 35 8-51 5-39 (241)
276 COG0569 TrkA K+ transport syst 44.2 26 0.00057 32.1 3.6 28 25-52 6-33 (225)
277 TIGR01012 Sa_S2_E_A ribosomal 44.2 1.4E+02 0.0031 26.7 8.0 90 322-415 46-139 (196)
278 COG1192 Soj ATPases involved i 44.1 38 0.00082 31.6 4.8 37 9-51 2-41 (259)
279 TIGR01968 minD_bact septum sit 44.0 34 0.00074 31.8 4.5 27 24-50 10-38 (261)
280 COG2102 Predicted ATPases of P 43.9 1.7E+02 0.0036 26.7 8.4 87 308-397 61-149 (223)
281 PRK05920 aromatic acid decarbo 43.6 50 0.0011 29.7 5.2 36 8-51 3-39 (204)
282 PLN02778 3,5-epimerase/4-reduc 43.2 37 0.0008 32.6 4.7 34 6-49 7-40 (298)
283 PRK02122 glucosamine-6-phospha 43.1 50 0.0011 35.7 5.9 42 7-54 368-409 (652)
284 PF10093 DUF2331: Uncharacteri 42.7 2.8E+02 0.0062 27.6 10.5 111 290-413 166-288 (374)
285 PF09949 DUF2183: Uncharacteri 42.5 85 0.0018 24.6 5.7 30 336-367 64-93 (100)
286 PRK13230 nitrogenase reductase 42.4 36 0.00079 32.2 4.4 26 25-50 10-37 (279)
287 TIGR01969 minD_arch cell divis 42.1 36 0.00078 31.4 4.3 28 24-51 9-38 (251)
288 COG4088 Predicted nucleotide k 41.9 29 0.00062 31.3 3.2 40 9-53 1-40 (261)
289 PRK00048 dihydrodipicolinate r 41.8 1E+02 0.0022 28.9 7.3 39 377-415 54-92 (257)
290 PF09198 T4-Gluco-transf: Bact 41.7 78 0.0017 19.0 4.5 36 9-46 1-38 (38)
291 PLN02206 UDP-glucuronate decar 41.4 35 0.00077 34.9 4.4 34 6-49 117-150 (442)
292 cd01452 VWA_26S_proteasome_sub 41.3 1.3E+02 0.0027 26.8 7.3 53 308-362 109-162 (187)
293 PRK06522 2-dehydropantoate 2-r 40.2 37 0.00081 32.5 4.2 32 9-51 1-32 (304)
294 COG0003 ArsA Predicted ATPase 40.1 50 0.0011 32.2 4.9 37 8-51 1-39 (322)
295 PRK07308 flavodoxin; Validated 40.0 53 0.0011 27.6 4.6 28 23-50 11-38 (146)
296 TIGR03815 CpaE_hom_Actino heli 39.5 48 0.001 32.2 4.9 38 6-49 90-129 (322)
297 PRK13705 plasmid-partitioning 39.5 50 0.0011 33.1 5.0 36 8-49 105-142 (388)
298 PLN02896 cinnamyl-alcohol dehy 39.4 46 0.001 32.7 4.8 38 3-50 5-42 (353)
299 PRK05568 flavodoxin; Provision 38.9 71 0.0015 26.5 5.2 37 10-51 3-39 (142)
300 COG2327 WcaK Polysaccharide py 38.9 4.1E+02 0.009 26.6 12.0 102 351-462 252-357 (385)
301 TIGR00715 precor6x_red precorr 38.7 47 0.001 31.2 4.4 26 25-51 7-32 (256)
302 PRK02255 putrescine carbamoylt 38.6 3.9E+02 0.0085 26.2 11.3 109 258-393 121-232 (338)
303 COG2120 Uncharacterized protei 38.6 64 0.0014 29.9 5.2 46 4-55 6-51 (237)
304 PRK05717 oxidoreductase; Valid 38.6 55 0.0012 30.3 5.0 38 4-50 5-42 (255)
305 TIGR00959 ffh signal recogniti 38.4 4.5E+02 0.0097 26.8 14.9 153 326-484 172-338 (428)
306 KOG1192 UDP-glucuronosyl and U 37.8 2.9E+02 0.0064 28.4 10.8 134 308-460 279-426 (496)
307 PRK12921 2-dehydropantoate 2-r 37.8 40 0.00087 32.3 4.0 31 9-50 1-31 (305)
308 PRK14982 acyl-ACP reductase; P 37.7 4.1E+02 0.0088 26.1 12.4 135 337-491 182-331 (340)
309 TIGR01425 SRP54_euk signal rec 37.5 4.6E+02 0.01 26.7 15.3 156 323-484 169-338 (429)
310 COG1553 DsrE Uncharacterized c 37.4 88 0.0019 25.5 5.0 40 9-51 1-41 (126)
311 KOG1209 1-Acyl dihydroxyaceton 37.3 59 0.0013 29.4 4.4 36 9-53 8-43 (289)
312 PRK01372 ddl D-alanine--D-alan 37.3 58 0.0013 31.2 5.0 42 7-51 3-45 (304)
313 PF09140 MipZ: ATPase MipZ; I 37.3 48 0.001 30.8 4.0 37 10-52 1-39 (261)
314 COG0655 WrbA Multimeric flavod 37.3 82 0.0018 28.3 5.7 40 9-51 1-40 (207)
315 PRK06924 short chain dehydroge 36.6 51 0.0011 30.3 4.4 34 9-51 1-34 (251)
316 COG0702 Predicted nucleoside-d 36.5 40 0.00086 31.5 3.7 29 25-53 7-35 (275)
317 PRK10427 putative PTS system f 36.4 82 0.0018 25.4 4.9 38 9-51 3-42 (114)
318 PLN02427 UDP-apiose/xylose syn 36.2 52 0.0011 32.8 4.6 36 5-50 11-47 (386)
319 PRK05693 short chain dehydroge 36.0 50 0.0011 31.0 4.3 34 9-51 1-34 (274)
320 PF07015 VirC1: VirC1 protein; 35.8 58 0.0013 29.9 4.3 37 9-51 1-39 (231)
321 PF01012 ETF: Electron transfe 35.4 1.6E+02 0.0034 25.2 7.0 88 323-412 18-119 (164)
322 PRK06849 hypothetical protein; 35.4 54 0.0012 32.8 4.6 36 6-51 2-37 (389)
323 TIGR02852 spore_dpaB dipicolin 35.2 81 0.0017 28.0 5.0 27 25-51 9-37 (187)
324 PF13460 NAD_binding_10: NADH( 35.1 41 0.00088 29.2 3.3 27 25-51 5-31 (183)
325 TIGR00670 asp_carb_tr aspartat 35.0 4.2E+02 0.0091 25.5 11.2 107 258-392 119-225 (301)
326 PRK11891 aspartate carbamoyltr 34.8 4.6E+02 0.01 26.7 10.9 112 257-392 205-317 (429)
327 PRK09730 putative NAD(P)-bindi 34.7 54 0.0012 30.0 4.2 32 9-49 1-32 (247)
328 PF02606 LpxK: Tetraacyldisacc 34.5 57 0.0012 31.8 4.4 43 8-55 34-78 (326)
329 PRK08105 flavodoxin; Provision 34.3 75 0.0016 26.9 4.6 28 23-50 11-38 (149)
330 TIGR01361 DAHP_synth_Bsub phos 34.3 3.8E+02 0.0082 25.2 9.7 90 321-415 37-140 (260)
331 KOG3349 Predicted glycosyltran 34.1 3E+02 0.0065 23.5 8.2 95 308-415 5-108 (170)
332 PRK05569 flavodoxin; Provision 34.1 92 0.002 25.8 5.2 37 10-51 3-39 (141)
333 PHA02518 ParA-like protein; Pr 33.9 60 0.0013 29.0 4.3 28 24-51 9-38 (211)
334 KOG2099 Glycogen phosphorylase 33.8 76 0.0017 33.0 5.1 127 295-425 551-703 (843)
335 PRK03767 NAD(P)H:quinone oxido 33.6 76 0.0017 28.4 4.8 38 9-51 2-40 (200)
336 PLN02686 cinnamoyl-CoA reducta 33.2 81 0.0018 31.3 5.4 26 25-50 60-85 (367)
337 PRK10675 UDP-galactose-4-epime 33.1 51 0.0011 32.0 4.0 26 25-50 7-32 (338)
338 TIGR01755 flav_wrbA NAD(P)H:qu 32.9 88 0.0019 27.9 5.1 37 9-50 1-38 (197)
339 KOG2884 26S proteasome regulat 32.8 3.8E+02 0.0082 24.3 11.1 52 306-361 107-161 (259)
340 PRK05447 1-deoxy-D-xylulose 5- 32.7 2.6E+02 0.0056 28.0 8.6 36 378-414 84-122 (385)
341 PRK07102 short chain dehydroge 32.5 64 0.0014 29.5 4.3 26 26-51 9-34 (243)
342 TIGR01426 MGT glycosyltransfer 32.5 36 0.00078 34.0 2.8 21 31-51 12-32 (392)
343 PRK14494 putative molybdopteri 32.4 92 0.002 28.7 5.1 38 9-51 1-38 (229)
344 PRK14619 NAD(P)H-dependent gly 32.2 78 0.0017 30.5 5.0 34 7-51 3-36 (308)
345 PRK08177 short chain dehydroge 32.0 73 0.0016 28.8 4.6 34 9-51 1-34 (225)
346 PF00070 Pyr_redox: Pyridine n 31.7 58 0.0013 23.9 3.2 27 26-52 6-32 (80)
347 PLN03007 UDP-glucosyltransfera 31.6 80 0.0017 32.8 5.2 41 6-52 3-43 (482)
348 PLN02662 cinnamyl-alcohol dehy 31.4 86 0.0019 30.1 5.2 27 25-51 11-37 (322)
349 COG4567 Response regulator con 31.4 1.1E+02 0.0023 26.1 4.8 57 393-453 64-124 (182)
350 PRK03692 putative UDP-N-acetyl 31.3 3.5E+02 0.0077 25.1 8.9 97 321-424 90-196 (243)
351 COG1087 GalE UDP-glucose 4-epi 31.0 63 0.0014 31.0 3.8 27 24-50 6-32 (329)
352 PRK06953 short chain dehydroge 31.0 61 0.0013 29.2 3.9 34 9-51 1-34 (222)
353 PRK00170 azoreductase; Reviewe 31.0 93 0.002 27.6 5.0 41 9-51 2-44 (201)
354 COG2204 AtoC Response regulato 30.9 6.1E+02 0.013 26.1 12.2 114 338-459 6-125 (464)
355 PRK10818 cell division inhibit 30.8 79 0.0017 29.7 4.7 38 9-52 2-41 (270)
356 PRK05299 rpsB 30S ribosomal pr 30.7 4.6E+02 0.0099 24.6 10.6 32 383-415 157-188 (258)
357 PF04392 ABC_sub_bind: ABC tra 30.5 3.8E+02 0.0083 25.4 9.5 93 322-415 117-219 (294)
358 TIGR03837 efp_adjacent_2 conse 30.2 5.6E+02 0.012 25.5 10.5 112 290-413 165-286 (371)
359 PF02302 PTS_IIB: PTS system, 30.2 1.1E+02 0.0023 23.0 4.6 35 10-51 1-37 (90)
360 PRK07313 phosphopantothenoylcy 30.2 1E+02 0.0022 27.2 5.0 35 9-51 2-37 (182)
361 PRK08309 short chain dehydroge 30.0 83 0.0018 27.6 4.3 25 25-50 7-31 (177)
362 PRK06101 short chain dehydroge 29.8 78 0.0017 29.0 4.4 33 9-50 1-33 (240)
363 PF04166 PdxA: Pyridoxal phosp 29.7 3.3E+02 0.0071 26.2 8.5 56 351-408 199-256 (298)
364 PRK08673 3-deoxy-7-phosphohept 29.5 5.5E+02 0.012 25.2 10.8 100 310-415 97-208 (335)
365 PLN02410 UDP-glucoronosyl/UDP- 29.5 95 0.0021 31.9 5.2 46 1-53 1-46 (451)
366 PRK06180 short chain dehydroge 29.4 83 0.0018 29.6 4.6 25 24-51 13-37 (277)
367 PRK08267 short chain dehydroge 29.3 78 0.0017 29.3 4.4 34 9-51 1-34 (260)
368 TIGR03029 EpsG chain length de 29.3 1.3E+02 0.0027 28.4 5.8 40 7-50 101-140 (274)
369 cd02037 MRP-like MRP (Multiple 28.9 69 0.0015 27.6 3.6 28 24-51 8-37 (169)
370 PLN02989 cinnamyl-alcohol dehy 28.9 96 0.0021 29.9 5.1 27 25-51 12-38 (325)
371 PRK04155 chaperone protein Hch 28.7 1.3E+02 0.0029 28.7 5.7 45 8-52 49-100 (287)
372 PLN02657 3,8-divinyl protochlo 28.5 92 0.002 31.2 4.9 27 25-51 67-93 (390)
373 PRK08229 2-dehydropantoate 2-r 28.5 74 0.0016 31.1 4.2 32 8-50 2-33 (341)
374 TIGR00421 ubiX_pad polyprenyl 28.5 1.2E+02 0.0025 26.8 4.9 27 25-51 8-35 (181)
375 PRK10538 malonic semialdehyde 28.4 78 0.0017 29.1 4.2 25 24-51 9-33 (248)
376 TIGR00682 lpxK tetraacyldisacc 28.4 1.1E+02 0.0023 29.7 5.1 33 23-55 37-71 (311)
377 TIGR00036 dapB dihydrodipicoli 28.3 1.5E+02 0.0033 27.9 6.1 34 382-415 67-100 (266)
378 PRK06719 precorrin-2 dehydroge 28.3 57 0.0012 28.0 2.9 26 26-51 20-45 (157)
379 PRK10446 ribosomal protein S6 28.2 77 0.0017 30.4 4.2 35 9-51 1-35 (300)
380 PRK01906 tetraacyldisaccharide 28.2 94 0.002 30.5 4.7 33 23-55 65-99 (338)
381 PF13614 AAA_31: AAA domain; P 28.1 1.3E+02 0.0028 25.2 5.2 29 24-52 11-39 (157)
382 TIGR03012 sulf_tusD_dsrE sulfu 28.1 1.3E+02 0.0029 24.7 4.9 39 10-51 1-40 (127)
383 COG0052 RpsB Ribosomal protein 28.0 5E+02 0.011 24.2 11.8 29 384-414 157-186 (252)
384 PF00258 Flavodoxin_1: Flavodo 27.8 83 0.0018 26.1 3.8 31 23-53 6-36 (143)
385 PRK07236 hypothetical protein; 27.7 90 0.002 31.1 4.7 35 5-50 3-37 (386)
386 PRK11670 antiporter inner memb 27.5 94 0.002 30.9 4.7 36 9-50 107-144 (369)
387 PRK05993 short chain dehydroge 27.5 99 0.0021 29.1 4.8 34 9-51 4-37 (277)
388 PRK07775 short chain dehydroge 27.5 1E+02 0.0023 28.8 4.9 35 7-50 8-42 (274)
389 KOG1192 UDP-glucuronosyl and U 27.5 92 0.002 32.2 4.9 29 25-53 16-44 (496)
390 PRK05653 fabG 3-ketoacyl-(acyl 27.4 98 0.0021 28.0 4.7 25 24-51 14-38 (246)
391 PRK14495 putative molybdopteri 27.4 1.2E+02 0.0026 30.9 5.3 37 9-50 1-37 (452)
392 PF00551 Formyl_trans_N: Formy 27.3 1.1E+02 0.0024 26.8 4.7 27 9-44 1-27 (181)
393 PRK12825 fabG 3-ketoacyl-(acyl 27.1 1E+02 0.0022 27.9 4.7 24 25-51 16-39 (249)
394 PLN00198 anthocyanidin reducta 26.8 1.2E+02 0.0027 29.4 5.5 27 25-51 16-42 (338)
395 PLN00141 Tic62-NAD(P)-related 26.8 1.1E+02 0.0023 28.3 4.8 35 7-51 16-50 (251)
396 COG1570 XseA Exonuclease VII, 26.7 2.1E+02 0.0046 29.0 6.8 72 307-395 163-236 (440)
397 PRK13233 nifH nitrogenase redu 26.6 93 0.002 29.3 4.4 25 25-49 11-38 (275)
398 COG1628 Endonuclease V homolog 26.6 2.2E+02 0.0048 25.1 6.1 60 385-467 71-133 (185)
399 PRK13886 conjugal transfer pro 26.5 1.1E+02 0.0023 28.5 4.5 37 9-51 2-40 (241)
400 PRK12320 hypothetical protein; 26.4 75 0.0016 34.6 4.0 26 25-50 7-32 (699)
401 COG3640 CooC CO dehydrogenase 26.4 99 0.0021 28.5 4.1 35 9-51 1-38 (255)
402 PRK08265 short chain dehydroge 26.4 1.1E+02 0.0024 28.4 4.8 33 10-51 7-39 (261)
403 PLN02208 glycosyltransferase f 26.3 1.2E+02 0.0025 31.2 5.2 39 7-51 3-41 (442)
404 PRK09273 hypothetical protein; 26.2 1.2E+02 0.0027 27.2 4.7 39 9-51 1-39 (211)
405 PF00185 OTCace: Aspartate/orn 26.2 1E+02 0.0022 26.5 4.1 36 8-52 2-37 (158)
406 TIGR02700 flavo_MJ0208 archaeo 26.1 1.1E+02 0.0025 28.1 4.7 27 25-51 10-38 (234)
407 TIGR01963 PHB_DH 3-hydroxybuty 26.0 91 0.002 28.6 4.2 27 25-51 8-34 (255)
408 PRK06719 precorrin-2 dehydroge 25.9 4.2E+02 0.009 22.6 10.0 34 381-415 68-102 (157)
409 PRK06027 purU formyltetrahydro 25.9 2E+02 0.0042 27.5 6.4 40 5-53 86-127 (286)
410 cd03129 GAT1_Peptidase_E_like 25.8 4.8E+02 0.01 23.3 10.7 84 335-420 28-125 (210)
411 PRK14571 D-alanyl-alanine synt 25.6 1.4E+02 0.0029 28.6 5.4 40 9-50 1-40 (299)
412 PRK06500 short chain dehydroge 25.5 1.1E+02 0.0024 27.9 4.7 24 24-50 15-38 (249)
413 PRK13394 3-hydroxybutyrate deh 25.5 1.1E+02 0.0025 28.1 4.8 34 9-51 7-40 (262)
414 COG0451 WcaG Nucleoside-diphos 25.4 90 0.0019 29.7 4.1 29 25-53 7-35 (314)
415 cd03146 GAT1_Peptidase_E Type 25.4 5E+02 0.011 23.3 10.7 96 319-415 14-122 (212)
416 PRK13231 nitrogenase reductase 25.4 53 0.0012 30.8 2.4 33 9-49 2-36 (264)
417 PRK07666 fabG 3-ketoacyl-(acyl 25.4 1.2E+02 0.0026 27.6 4.8 27 25-51 14-40 (239)
418 PRK07453 protochlorophyllide o 25.4 1.1E+02 0.0024 29.5 4.8 33 9-50 6-38 (322)
419 PRK10569 NAD(P)H-dependent FMN 25.0 1.7E+02 0.0036 26.1 5.4 39 9-51 1-40 (191)
420 PRK07067 sorbitol dehydrogenas 24.9 1.2E+02 0.0026 28.0 4.7 33 10-51 7-39 (257)
421 PRK13982 bifunctional SbtC-lik 24.8 1.3E+02 0.0029 31.0 5.2 35 9-51 71-106 (475)
422 PRK12745 3-ketoacyl-(acyl-carr 24.8 1.1E+02 0.0024 28.1 4.5 27 25-51 9-35 (256)
423 PRK00211 sulfur relay protein 24.7 1.5E+02 0.0033 24.0 4.6 40 9-52 2-42 (119)
424 PRK06171 sorbitol-6-phosphate 24.6 1.2E+02 0.0026 28.1 4.7 33 10-51 10-42 (266)
425 PRK06179 short chain dehydroge 24.6 1.2E+02 0.0025 28.3 4.7 25 24-51 13-37 (270)
426 PRK08226 short chain dehydroge 24.5 1.2E+02 0.0026 28.1 4.7 25 24-51 15-39 (263)
427 PRK06398 aldose dehydrogenase; 24.3 1.3E+02 0.0028 27.9 4.8 32 10-50 7-38 (258)
428 PRK06194 hypothetical protein; 24.3 1.3E+02 0.0028 28.3 4.9 24 24-50 15-38 (287)
429 PTZ00254 40S ribosomal protein 23.8 2.7E+02 0.0057 26.0 6.5 94 318-415 51-149 (249)
430 TIGR00288 conserved hypothetic 23.8 3E+02 0.0065 23.7 6.4 66 319-390 88-155 (160)
431 PRK08264 short chain dehydroge 23.7 1.3E+02 0.0028 27.3 4.7 27 25-51 13-40 (238)
432 PRK05562 precorrin-2 dehydroge 23.7 5.7E+02 0.012 23.4 11.7 81 331-424 43-125 (223)
433 PRK10310 PTS system galactitol 23.5 1.8E+02 0.0038 22.4 4.6 33 10-50 4-39 (94)
434 PRK08085 gluconate 5-dehydroge 23.5 1.4E+02 0.0029 27.5 4.8 32 10-50 10-41 (254)
435 PLN02572 UDP-sulfoquinovose sy 23.4 1E+02 0.0022 31.6 4.2 25 25-49 54-78 (442)
436 PF04413 Glycos_transf_N: 3-De 23.4 3.1E+02 0.0067 24.2 6.8 39 213-261 141-179 (186)
437 TIGR02622 CDP_4_6_dhtase CDP-g 23.3 1E+02 0.0023 30.1 4.2 24 24-50 13-36 (349)
438 PF00185 OTCace: Aspartate/orn 23.1 4.8E+02 0.01 22.3 8.0 76 308-393 3-83 (158)
439 cd03111 CpaE_like This protein 23.1 1.3E+02 0.0027 23.7 3.8 27 24-50 8-37 (106)
440 PRK06753 hypothetical protein; 22.9 1.1E+02 0.0024 30.2 4.3 31 9-50 1-31 (373)
441 PF11238 DUF3039: Protein of u 22.9 58 0.0012 22.5 1.5 14 400-413 17-30 (58)
442 PLN02583 cinnamoyl-CoA reducta 22.8 1.3E+02 0.0028 28.7 4.6 26 25-50 13-38 (297)
443 PRK14620 NAD(P)H-dependent gly 22.8 1.1E+02 0.0025 29.6 4.3 32 9-51 1-32 (326)
444 PLN02214 cinnamoyl-CoA reducta 22.7 1.4E+02 0.003 29.2 4.9 27 25-51 17-43 (342)
445 PRK06029 3-octaprenyl-4-hydrox 22.7 1.7E+02 0.0037 25.9 4.9 35 9-51 2-38 (185)
446 TIGR03466 HpnA hopanoid-associ 22.7 1.1E+02 0.0023 29.5 4.1 27 25-51 7-33 (328)
447 PF02635 DrsE: DsrE/DsrF-like 22.6 2E+02 0.0044 22.6 5.2 40 9-51 1-43 (122)
448 TIGR01768 GGGP-family geranylg 22.6 1.9E+02 0.0041 26.5 5.3 71 316-392 6-80 (223)
449 PLN02240 UDP-glucose 4-epimera 22.5 1.1E+02 0.0025 29.7 4.3 26 25-50 12-37 (352)
450 PRK06732 phosphopantothenate-- 22.4 1.6E+02 0.0034 27.1 4.8 25 23-50 24-48 (229)
451 PRK12827 short chain dehydroge 22.4 1.1E+02 0.0024 27.8 4.0 33 8-50 6-38 (249)
452 PLN02210 UDP-glucosyl transfer 22.3 1.4E+02 0.003 30.7 5.0 46 1-52 1-48 (456)
453 PRK07326 short chain dehydroge 22.3 1.3E+02 0.0029 27.1 4.5 25 26-50 14-38 (237)
454 PRK07856 short chain dehydroge 22.2 1.5E+02 0.0032 27.2 4.8 27 25-51 13-39 (252)
455 PRK07576 short chain dehydroge 22.2 1.6E+02 0.0034 27.5 5.0 25 24-51 18-42 (264)
456 COG4221 Short-chain alcohol de 22.2 1.8E+02 0.0039 27.0 5.0 35 10-53 7-41 (246)
457 cd02033 BchX Chlorophyllide re 22.1 1.5E+02 0.0033 29.0 4.8 37 7-50 29-67 (329)
458 PRK06444 prephenate dehydrogen 22.0 1.4E+02 0.003 26.7 4.3 28 9-46 1-28 (197)
459 PRK06124 gluconate 5-dehydroge 21.8 1.5E+02 0.0032 27.3 4.7 26 26-51 19-44 (256)
460 PRK06200 2,3-dihydroxy-2,3-dih 21.7 1.5E+02 0.0033 27.3 4.9 32 10-50 7-38 (263)
461 PRK06196 oxidoreductase; Provi 21.5 1.4E+02 0.003 28.7 4.6 33 10-51 27-59 (315)
462 PRK05579 bifunctional phosphop 21.5 1.6E+02 0.0035 29.7 5.1 36 8-51 6-42 (399)
463 PRK08589 short chain dehydroge 21.5 1.6E+02 0.0034 27.6 4.9 33 10-51 7-39 (272)
464 KOG2452 Formyltetrahydrofolate 21.5 1E+02 0.0023 31.0 3.5 31 9-50 1-31 (881)
465 PF02780 Transketolase_C: Tran 21.4 2.6E+02 0.0055 22.5 5.5 35 9-51 10-44 (124)
466 cd03145 GAT1_cyanophycinase Ty 21.4 6.1E+02 0.013 22.9 10.5 84 336-421 29-129 (217)
467 COG4109 Predicted transcriptio 21.4 3.7E+02 0.008 26.5 7.0 58 336-400 114-172 (432)
468 TIGR02113 coaC_strep phosphopa 21.3 1.8E+02 0.0038 25.5 4.7 27 25-51 9-36 (177)
469 PRK06914 short chain dehydroge 21.3 1.4E+02 0.0031 27.8 4.6 26 26-51 11-36 (280)
470 PRK10867 signal recognition pa 21.3 8.9E+02 0.019 24.7 16.1 152 327-484 174-339 (433)
471 COG1893 ApbA Ketopantoate redu 21.3 1.3E+02 0.0027 29.2 4.1 32 9-51 1-32 (307)
472 PRK15181 Vi polysaccharide bio 21.0 1.2E+02 0.0027 29.6 4.2 26 25-50 22-47 (348)
473 PRK04020 rps2P 30S ribosomal p 21.0 6.2E+02 0.013 22.8 12.1 92 319-415 49-145 (204)
474 TIGR03010 sulf_tusC_dsrF sulfu 20.9 1.9E+02 0.0042 23.2 4.6 39 10-52 1-40 (116)
475 PRK09590 celB cellobiose phosp 20.8 1.7E+02 0.0038 23.1 4.1 36 10-51 3-38 (104)
476 PRK06182 short chain dehydroge 20.6 1.5E+02 0.0032 27.7 4.5 25 24-51 12-36 (273)
477 TIGR01753 flav_short flavodoxi 20.6 1.7E+02 0.0037 23.9 4.4 29 23-51 8-36 (140)
478 PRK14569 D-alanyl-alanine synt 20.6 2E+02 0.0042 27.6 5.4 41 8-50 3-43 (296)
479 PRK07478 short chain dehydroge 20.6 1.6E+02 0.0035 27.0 4.7 33 10-51 7-39 (254)
480 PLN02650 dihydroflavonol-4-red 20.5 1.7E+02 0.0038 28.5 5.1 27 25-51 12-38 (351)
481 PRK08703 short chain dehydroge 20.5 1.6E+02 0.0034 26.8 4.5 25 24-51 15-39 (239)
482 PRK12429 3-hydroxybutyrate deh 20.5 1.6E+02 0.0035 27.0 4.7 25 24-51 13-37 (258)
483 PRK08655 prephenate dehydrogen 20.5 1.2E+02 0.0025 31.1 3.9 33 9-51 1-33 (437)
484 PF02826 2-Hacid_dh_C: D-isome 20.5 5.2E+02 0.011 22.4 7.6 32 377-408 85-121 (178)
485 TIGR03316 ygeW probable carbam 20.4 8.4E+02 0.018 24.2 12.1 111 257-392 136-254 (357)
486 PRK07063 short chain dehydroge 20.4 1.7E+02 0.0036 27.0 4.8 33 10-51 8-40 (260)
487 PF14202 TnpW: Transposon-enco 20.4 1.4E+02 0.003 18.6 2.7 21 436-456 16-36 (37)
488 PRK14493 putative bifunctional 20.3 1.8E+02 0.0039 27.6 4.9 36 9-50 1-36 (274)
489 PF12146 Hydrolase_4: Putative 20.3 3.1E+02 0.0067 20.2 5.2 34 9-48 16-49 (79)
490 PRK11780 isoprenoid biosynthes 20.2 2E+02 0.0043 26.2 4.9 42 9-53 2-44 (217)
491 PRK12829 short chain dehydroge 20.2 1.3E+02 0.0029 27.7 4.0 24 25-51 21-44 (264)
492 PRK10217 dTDP-glucose 4,6-dehy 20.2 1.3E+02 0.0028 29.5 4.1 26 25-50 8-33 (355)
493 PRK05884 short chain dehydroge 20.1 1.3E+02 0.0029 27.2 3.9 25 24-51 9-33 (223)
494 PF00885 DMRL_synthase: 6,7-di 20.0 2.5E+02 0.0054 23.7 5.2 39 7-49 2-43 (144)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-77 Score=624.77 Aligned_cols=483 Identities=38% Similarity=0.667 Sum_probs=410.8
Q ss_pred cccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEE
Q 011163 3 KWLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANK 82 (492)
Q Consensus 3 ~~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (492)
+.++++|||+||+.|+.|+.++||++.++..|.++|+++||+|.||+|.|+........+.......+..++++..+.++
T Consensus 476 ~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 555 (977)
T PLN02939 476 SGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNK 555 (977)
T ss_pred CCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEE
Confidence 56688899999999999999999999999999999999999999999999865422222222222233445666666788
Q ss_pred EEEEEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhc
Q 011163 83 IWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQ 162 (492)
Q Consensus 83 ~~~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~ 162 (492)
+|+..++|+++|+|++.....||.+..+|++.|+..||.+|++++++++.+.+++|||||||+|++++++++++..+...
T Consensus 556 v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~ 635 (977)
T PLN02939 556 IWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPK 635 (977)
T ss_pred EEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhc
Confidence 99999999999999843222478888899999999999999999999998877899999999999999866665544433
Q ss_pred CCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccC
Q 011163 163 GLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLS 242 (492)
Q Consensus 163 ~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~ 242 (492)
++.++|+|+|+|++.|+|.++...+..+|+++..+..++.++.. ....+++++.++.+||.|++||+.+++++.. .+|
T Consensus 636 ~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~EI~t-e~G 713 (977)
T PLN02939 636 GFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQEVRS-EGG 713 (977)
T ss_pred cCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHHHHHH-Hhc
Confidence 44678999999999999999877777788887766444444311 1135799999999999999999999999987 778
Q ss_pred CCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCC-CCceEEEEEeccccccC
Q 011163 243 HGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKD-ASTIVVGCIFSDVSDVF 321 (492)
Q Consensus 243 ~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~i~~~grl~~~Kg 321 (492)
.+|++++..+.+++.+|+||||++.|+|..+.+++.+|+++++++|..++..+++++|++.+ ++.++|+++||+.++||
T Consensus 714 ~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKG 793 (977)
T PLN02939 714 RGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKG 793 (977)
T ss_pred cchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccC
Confidence 88988888888999999999999999999999999999999999999999999999999853 45689999999999999
Q ss_pred HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHH
Q 011163 322 LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 400 (492)
Q Consensus 322 ~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~ 400 (492)
++.|++|+..+.+.+++|+|+|+|+++.+++.++++++.++. ++|.|++.+++...+.+|++||+||+||++||||+++
T Consensus 794 iDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvq 873 (977)
T PLN02939 794 VHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQ 873 (977)
T ss_pred hHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHH
Confidence 999999999887668999999988665677888999988764 7899999999888889999999999999999999999
Q ss_pred HHHhhcCCceEEEecCCCcccccccccc-c---ccceeeeeecCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhccC
Q 011163 401 LKALKYGAAPIAVTSSDIEFRHFAEFDH-E---STRFSRFISSTFGNISLSQALEEIKN----NPLSWKRKIKDAMLQDF 472 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~~e~v~~~~-~---~~g~~G~~~~~~~~~~l~~ai~~~~~----~~~~~~~~~~~a~~~~f 472 (492)
+|||+||+|||++++ ||+.|+|.+.. . ..+.|||+|++.|+++|+++|.++++ |++.+.+|+++++.++|
T Consensus 874 LEAMAyGtPPVVs~v--GGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dF 951 (977)
T PLN02939 874 MIAMRYGSVPIVRKT--GGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDF 951 (977)
T ss_pred HHHHHCCCCEEEecC--CCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcC
Confidence 999999999999999 99999986411 0 12568999999999999999988764 89999999999988999
Q ss_pred CchhhHHHHHHHHHHHHh
Q 011163 473 SWDADCNDIHISAYTAIK 490 (492)
Q Consensus 473 sw~~~a~~~~~~~Y~~l~ 490 (492)
||+.++++ |+++|+++.
T Consensus 952 SWe~~A~q-YeeLY~~ll 968 (977)
T PLN02939 952 SWDSSASQ-YEELYQRAV 968 (977)
T ss_pred CHHHHHHH-HHHHHHHHH
Confidence 99999999 599999874
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3e-69 Score=551.20 Aligned_cols=463 Identities=22% Similarity=0.366 Sum_probs=377.1
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
++|||++|+.|..|+.++||++-++..|.++|+++||+|.|++|.|...... ...... ...+.+.+++ ..++++.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~ 76 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQ-VHSFPDLFGG---PARLLAA 76 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceE-EEEEeeeCCc---eEEEEEE
Confidence 5699999999999999999999999999999999999999999999875322 111111 1222223332 3567778
Q ss_pred EECCeEEEEEccCCCCCCccCCC-CC------CCCChhHHHHHHHHHHHHHHHHc--CCCCCEEEEcCchhhhHHHHHHH
Q 011163 87 VVSGIGVTFIQPLHYSSFFNRES-VY------GYSDDFERFTYFSRASLDYIVKS--RKQPDVLHIHNWETAIVGPLFWD 157 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~pDiVh~h~~~~~~~~~~~~~ 157 (492)
..+|+++|+++ ++.+|.+.. +| +|.|+..||.+|++++++++... +.+|||||+|+|+++++|.++..
T Consensus 77 ~~~~v~~~~~~---~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~ 153 (485)
T PRK14099 77 RAGGLDLFVLD---APHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHY 153 (485)
T ss_pred EeCCceEEEEe---ChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHh
Confidence 88999999997 466777653 55 47799999999999999988753 57999999999999999877742
Q ss_pred HHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhh
Q 011163 158 IFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 237 (492)
Q Consensus 158 ~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 237 (492)
. ...++|+|+|+|++.+++.++...+..+++++..+. ....++++ ..++++.++..||.|++||+.+++++.
T Consensus 154 ~----~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~k~~i~~ad~vitVS~~~a~ei~ 225 (485)
T PRK14099 154 S----GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVEYYG---GIGYLKAGLQLADRITTVSPTYALEIQ 225 (485)
T ss_pred C----CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhhhCC---CccHHHHHHHhcCeeeecChhHHHHHh
Confidence 1 124689999999999998887666555666554332 22233332 357899999999999999999999988
Q ss_pred hcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 011163 238 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 317 (492)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~ 317 (492)
....+.++++++..+.+++.+|+||||++.|+|..+..+..+|+.++++++..++..+++++|++.++..++|+++||+.
T Consensus 226 ~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~ 305 (485)
T PRK14099 226 GPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLS 305 (485)
T ss_pred cccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCC
Confidence 76667777777777788999999999999999998888888899888888888999999999998765678999999999
Q ss_pred cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCc
Q 011163 318 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 397 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~g 397 (492)
++||++.|++|++++.+.+++|+|+|+|+ +.+++.+++++++++ +++.++.+++++....++++||+|++||++||||
T Consensus 306 ~~KG~d~Li~A~~~l~~~~~~lvivG~G~-~~~~~~l~~l~~~~~-~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fG 383 (485)
T PRK14099 306 WQKGLDLLLEALPTLLGEGAQLALLGSGD-AELEARFRAAAQAYP-GQIGVVIGYDEALAHLIQAGADALLVPSRFEPCG 383 (485)
T ss_pred ccccHHHHHHHHHHHHhcCcEEEEEecCC-HHHHHHHHHHHHHCC-CCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCc
Confidence 99999999999999987789999999763 457788999888874 5664445666655444457899999999999999
Q ss_pred hHHHHHhhcCCceEEEecCCCccccccccccc-c---cceeeeeecCCCHHHHHHHHHH---HhcCHHHHHHHHHHHHhc
Q 011163 398 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-S---TRFSRFISSTFGNISLSQALEE---IKNNPLSWKRKIKDAMLQ 470 (492)
Q Consensus 398 lv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~---~g~~G~~~~~~~~~~l~~ai~~---~~~~~~~~~~~~~~a~~~ 470 (492)
++++|||+||+|||++++ ||++|+|.+..+ . ...+|++|++.|+++|+++|.+ +++|++.+++|+++++.+
T Consensus 384 l~~lEAma~G~ppVvs~~--GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~~~ 461 (485)
T PRK14099 384 LTQLCALRYGAVPVVARV--GGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGMTT 461 (485)
T ss_pred HHHHHHHHCCCCcEEeCC--CCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhh
Confidence 999999999999999999 999999864210 0 0157999999999999999997 678999999999999989
Q ss_pred cCCchhhHHHHHHHHHHHHh
Q 011163 471 DFSWDADCNDIHISAYTAIK 490 (492)
Q Consensus 471 ~fsw~~~a~~~~~~~Y~~l~ 490 (492)
+|||++++++ |+++|+++.
T Consensus 462 ~fSw~~~a~~-y~~lY~~l~ 480 (485)
T PRK14099 462 DVSWRNPAQH-YAALYRSLV 480 (485)
T ss_pred cCChHHHHHH-HHHHHHHHH
Confidence 9999999999 599999874
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.3e-68 Score=547.03 Aligned_cols=470 Identities=21% Similarity=0.343 Sum_probs=381.6
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCccc--ccccceeeeeeeeecCCeeeEEE
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDG--VQGLREIKAECYSYFNGQLHANK 82 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (492)
.++.|||++|++|..|+.++||++-++..|.++|+++||+|.|++|.|....... ..... ....+.+..++......
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVL-RLSDIEVPLKEKTDLLH 80 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccce-EEEEEEEeecCeeEEEE
Confidence 5677999999999999999999999999999999999999999999998754320 11110 11122233333222222
Q ss_pred EEEEEEC--CeEEEEEccCCCCCCccCCCCCC-------CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHH
Q 011163 83 IWIGVVS--GIGVTFIQPLHYSSFFNRESVYG-------YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGP 153 (492)
Q Consensus 83 ~~~~~~~--gv~v~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~ 153 (492)
+.....+ |+++|+++ ++.+|.+..+|+ |.|+..||.+|++++++++++.+.+|||||+|+|+++++|.
T Consensus 81 ~~~~~~~~~~v~~~~~~---~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~ 157 (489)
T PRK14098 81 VKVTALPSSKIQTYFLY---NEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPL 157 (489)
T ss_pred EEEecccCCCceEEEEe---CHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Confidence 2222233 69999997 577888877774 56999999999999999998777799999999999999998
Q ss_pred HHHHHHhh-cCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccc
Q 011163 154 LFWDIFVK-QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMH 232 (492)
Q Consensus 154 ~~~~~~~~-~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~ 232 (492)
+++..+.. ....++|+|+|+|++.++|.++...+..+ ++...+ .....+ ....++++.++.+||.|++||+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~~~--~~~~n~lk~~i~~ad~VitVS~~~ 231 (489)
T PRK14098 158 LLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLHRE--GDEVNMLYTGVEHADLLTTTSPRY 231 (489)
T ss_pred HHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhhhc--CCcccHHHHHHHhcCcceeeCHHH
Confidence 88654321 11247999999999998887765544322 322211 111111 124689999999999999999999
Q ss_pred hhhhhhc-ccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEE
Q 011163 233 SKGRIIR-SLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVG 311 (492)
Q Consensus 233 ~~~~~~~-~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~ 311 (492)
++++... .++.++++++.....++.+|+||||++.|+|..+..+..+|+.+++++|..++..+++++|++.+++.++++
T Consensus 232 a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~ 311 (489)
T PRK14098 232 AEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVG 311 (489)
T ss_pred HHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEE
Confidence 9998753 456678878777788999999999999999988777788899888888989999999999999777789999
Q ss_pred EEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECC
Q 011163 312 CIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHS 391 (492)
Q Consensus 312 ~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS 391 (492)
++||+.++||++.|++|+.++.+.+++|+|+|+|+ ..+++.+++++++++ ++|.|.+.+++++++.+|++||++++||
T Consensus 312 ~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~-~~~~~~l~~l~~~~~-~~V~~~g~~~~~~~~~~~a~aDi~l~PS 389 (489)
T PRK14098 312 VIINFDDFQGAELLAESLEKLVELDIQLVICGSGD-KEYEKRFQDFAEEHP-EQVSVQTEFTDAFFHLAIAGLDMLLMPG 389 (489)
T ss_pred EeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHHHHHHHHHCC-CCEEEEEecCHHHHHHHHHhCCEEEeCC
Confidence 99999999999999999999987789999999764 346788999998884 7999999999998999999999999999
Q ss_pred CCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q 011163 392 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK---NNPLSWKRKIKDAM 468 (492)
Q Consensus 392 ~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~---~~~~~~~~~~~~a~ 468 (492)
.+|+||++.+|||+||+|||++++ ||+.|+|.+.. .++.+|++|++.|+++|+++|.+++ +|++.+++++++++
T Consensus 390 ~~E~~Gl~~lEAma~G~ppVv~~~--GGl~d~v~~~~-~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~ 466 (489)
T PRK14098 390 KIESCGMLQMFAMSYGTIPVAYAG--GGIVETIEEVS-EDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAM 466 (489)
T ss_pred CCCCchHHHHHHHhCCCCeEEecC--CCCceeeecCC-CCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 999999999999999999999999 99999985311 1256899999999999999998754 68899999999888
Q ss_pred hccCCchhhHHHHHHHHHHHHh
Q 011163 469 LQDFSWDADCNDIHISAYTAIK 490 (492)
Q Consensus 469 ~~~fsw~~~a~~~~~~~Y~~l~ 490 (492)
.++|||+.++++ |+++|+++.
T Consensus 467 ~~~fsw~~~a~~-y~~lY~~~~ 487 (489)
T PRK14098 467 ERDFSWKNSAEE-YAQLYRELL 487 (489)
T ss_pred cCCCChHHHHHH-HHHHHHHHh
Confidence 899999999999 599999875
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.1e-67 Score=544.06 Aligned_cols=465 Identities=31% Similarity=0.503 Sum_probs=389.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++|+.|++|+.++||++.++.+|+++|+++||+|.|++|.|+...... ....+....+.+.++++...+++++...
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEV-DDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhh-ccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 899999999999989999999999999999999999999999998654322 1122233455667788888899999999
Q ss_pred CCeEEEEEccCCCCCCccCC-CCCC--CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCC
Q 011163 89 SGIGVTFIQPLHYSSFFNRE-SVYG--YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 165 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~ 165 (492)
+|+++|+++. +.+|.+. .+|+ |.++..++.+|++++++++++.+.+|||||+|+|++++++.+++..+. ..
T Consensus 80 ~~v~~~~i~~---~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDN---PSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEEC---HHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 9999999983 4456553 4776 788999999999999999887778999999999999999887765421 01
Q ss_pred CCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCc
Q 011163 166 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 245 (492)
Q Consensus 166 ~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l 245 (492)
++|+|+|+|++.++|.++...+..++++...+. ...++++ ...++++.++..||.|++||+.+++++....++.++
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLEFY---GRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhhcC---CchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 489999999998888877655555555543321 1112222 246789999999999999999999988766666777
Q ss_pred cHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHH
Q 011163 246 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 325 (492)
Q Consensus 246 ~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~l 325 (492)
++.+..++.++.+|+||+|.+.|+|..+..+..+|+.++++++..++..+++++|++.+++.++|+++||+.++||++.|
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~l 309 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLL 309 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHH
Confidence 77776677899999999999999998887888888888888888889999999999875567899999999999999999
Q ss_pred HHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 326 KAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 326 i~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
++|++++.+.+++|+|+|.|+ +.+.+.+++++++++ +++.+.++++.+++..+|++||++++||.+||||++.+|||+
T Consensus 310 i~a~~~l~~~~~~lvi~G~g~-~~~~~~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 387 (473)
T TIGR02095 310 LAALPELLELGGQLVVLGTGD-PELEEALRELAERYP-GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMR 387 (473)
T ss_pred HHHHHHHHHcCcEEEEECCCC-HHHHHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHH
Confidence 999999987789999999763 467788999888874 788888899988888999999999999999999999999999
Q ss_pred cCCceEEEecCCCcccccccccc-cccceeeeeecCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCCchhhHHH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQALEEIKN----NPLSWKRKIKDAMLQDFSWDADCND 480 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~~~~~~l~~ai~~~~~----~~~~~~~~~~~a~~~~fsw~~~a~~ 480 (492)
||+|||++++ ||+.|+|.+.. ...+.+|++|++.|+++|+++|.++++ |++.+++|+++++.++|||++++++
T Consensus 388 ~G~pvI~s~~--gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~ 465 (473)
T TIGR02095 388 YGTVPIVRRT--GGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQ 465 (473)
T ss_pred CCCCeEEccC--CCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 9999999999 99999987420 011268999999999999999999887 9999999999998889999999999
Q ss_pred HHHHHHHHH
Q 011163 481 IHISAYTAI 489 (492)
Q Consensus 481 ~~~~~Y~~l 489 (492)
|+++|+++
T Consensus 466 -~~~~Y~~l 473 (473)
T TIGR02095 466 -YVELYRSL 473 (473)
T ss_pred -HHHHHHhC
Confidence 59999874
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.6e-67 Score=538.85 Aligned_cols=459 Identities=28% Similarity=0.447 Sum_probs=374.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE--
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG-- 86 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (492)
|||++|+.|++|+.++||++.++.+|+++|+++||+|.|++|.++...... .+...+ ... ....++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~---~~~------~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVV---GRL------DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEE---EEe------eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999987643221 111110 000 01233333
Q ss_pred EECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC
Q 011163 87 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 166 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
..+|+++|+++. +.++.+..+|++.++..|+.+|++++++++++++.+|||||+|+|++++++.+++..+ ..+..+
T Consensus 71 ~~~gv~v~~v~~---~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDA---PHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeC---HHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 458999999983 5677777889888999999999999999998777799999999999999988886543 222347
Q ss_pred CcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCcc
Q 011163 167 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 246 (492)
Q Consensus 167 ~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~ 246 (492)
+|+|+|+|++.++|.++...+..++++...+. ...++++ ...++++.++..||.|++||+.+++++....++.+++
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLEFY---GQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhhcC---CcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 89999999999888776655555555543321 2222222 1357899999999999999999999887656666677
Q ss_pred HHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHH
Q 011163 247 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 326 (492)
Q Consensus 247 ~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li 326 (492)
+.+..+.+++.+|+||||.+.|+|..+..+...|+.++++++..++..+++++|++.+ +.++++++||+.++||++.|+
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~-~~~~i~~vGRl~~~KG~~~li 301 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDD-DAPLFAMVSRLTEQKGLDLVL 301 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCC-CCcEEEEeeccccccChHHHH
Confidence 6777678899999999999999998877777888888888888889999999999842 468899999999999999999
Q ss_pred HHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 327 AVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 327 ~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
+|++++.+.+++|+|+|+| ++.+.+.+++++++++ +++.+..+++.+..+.+|++||++|+||.+||||++++|||+|
T Consensus 302 ~a~~~l~~~~~~lvivG~g-~~~~~~~l~~l~~~~~-~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~ 379 (466)
T PRK00654 302 EALPELLEQGGQLVLLGTG-DPELEEAFRALAARYP-GKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRY 379 (466)
T ss_pred HHHHHHHhcCCEEEEEecC-cHHHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHC
Confidence 9999998778999999966 3456788999998885 6787777888777889999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccc-cccceeeeeecCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhccCCchhhHHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQALEEIKN---NPLSWKRKIKDAMLQDFSWDADCNDIH 482 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~~~~~~l~~ai~~~~~---~~~~~~~~~~~a~~~~fsw~~~a~~~~ 482 (492)
|+|||++++ ||+.|+|.+.. ..++.+|++|++.|+++|+++|.++++ +++.+.+++++++.++|||+.++++ |
T Consensus 380 G~p~V~~~~--gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~-~ 456 (466)
T PRK00654 380 GTLPIVRRT--GGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEE-Y 456 (466)
T ss_pred CCCEEEeCC--CCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHH-H
Confidence 999999999 99999986320 011268999999999999999998875 7778899999998889999999999 5
Q ss_pred HHHHHHHhc
Q 011163 483 ISAYTAIKN 491 (492)
Q Consensus 483 ~~~Y~~l~~ 491 (492)
+++|+++.+
T Consensus 457 ~~lY~~~~~ 465 (466)
T PRK00654 457 LELYRRLLG 465 (466)
T ss_pred HHHHHHHhh
Confidence 999998753
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.4e-65 Score=544.29 Aligned_cols=438 Identities=30% Similarity=0.485 Sum_probs=358.7
Q ss_pred ccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEE
Q 011163 4 WLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKI 83 (492)
Q Consensus 4 ~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (492)
...++|||++|+.|+.|+.++||++.++.+|+++|+++||+|.|++|.|..........+. ....+.+++ ..+.+
T Consensus 583 ~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~---~~~~~~~~~--~~~~v 657 (1036)
T PLN02316 583 AKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLH---YQRSYSWGG--TEIKV 657 (1036)
T ss_pred CCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccce---EEEEeccCC--EEEEE
Confidence 4567799999999999999999999999999999999999999999998754322111111 112222333 24567
Q ss_pred EEEEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcC
Q 011163 84 WIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQG 163 (492)
Q Consensus 84 ~~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~ 163 (492)
++...+|+++|+|+.. ..+|.+..+|++.|+..||.+|++++++++++.+.+|||||+|+|++++++.+++..+....
T Consensus 658 ~~~~~~GV~vyfl~~~--~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~ 735 (1036)
T PLN02316 658 WFGKVEGLSVYFLEPQ--NGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYG 735 (1036)
T ss_pred EEEEECCcEEEEEecc--ccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhc
Confidence 8888999999999842 24677777888899999999999999999988778999999999999999888765443223
Q ss_pred CCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCC
Q 011163 164 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 243 (492)
Q Consensus 164 ~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 243 (492)
+.++|+|+|+|++.++ .+.++.++..||.|++||+.+++++.....
T Consensus 736 ~~~~p~V~TiHnl~~~--------------------------------~n~lk~~l~~AD~ViTVS~tya~EI~~~~~-- 781 (1036)
T PLN02316 736 LSKARVVFTIHNLEFG--------------------------------ANHIGKAMAYADKATTVSPTYSREVSGNSA-- 781 (1036)
T ss_pred cCCCCEEEEeCCcccc--------------------------------hhHHHHHHHHCCEEEeCCHHHHHHHHhccC--
Confidence 4578999999976431 133567889999999999999988865211
Q ss_pred CccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCc-cChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCH
Q 011163 244 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDM-KGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFL 322 (492)
Q Consensus 244 ~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~ 322 (492)
+..+..++.+|+||||++.|+|..+.+++.+|+.+++ ++|..++..+++++|++. .+.++++++||+.++||+
T Consensus 782 -----l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~-~d~plVg~VGRL~~qKGv 855 (1036)
T PLN02316 782 -----IAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ-ADLPLVGIITRLTHQKGI 855 (1036)
T ss_pred -----cccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc-ccCeEEEEEeccccccCH
Confidence 1113479999999999999999988888888988775 578888899999999984 246899999999999999
Q ss_pred HHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhC---CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchH
Q 011163 323 ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK---DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQV 399 (492)
Q Consensus 323 ~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv 399 (492)
++|++|+.++.+.+++|+|+|+|+++.+++.+++++++++ .++|.|.+++++...+.+|++||+||+||++||||++
T Consensus 856 dlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLv 935 (1036)
T PLN02316 856 HLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLT 935 (1036)
T ss_pred HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHH
Confidence 9999999998777899999998877667788999998764 2689999888887777899999999999999999999
Q ss_pred HHHHhhcCCceEEEecCCCcccccccccc--------cccceeeeeecCCCHHHHHHHHHHHhcC----HHHHHHHHHHH
Q 011163 400 PLKALKYGAAPIAVTSSDIEFRHFAEFDH--------ESTRFSRFISSTFGNISLSQALEEIKNN----PLSWKRKIKDA 467 (492)
Q Consensus 400 ~lEAma~G~PvV~~~~~~gg~~e~v~~~~--------~~~g~~G~~~~~~~~~~l~~ai~~~~~~----~~~~~~~~~~a 467 (492)
+||||+||+|||++++ ||++|+|.+.. .+.+.|||+|++.|+++|+++|.+++.+ +..+.++++++
T Consensus 936 qLEAMa~GtppVvs~v--GGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~ 1013 (1036)
T PLN02316 936 QLTAMRYGSIPVVRKT--GGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRV 1013 (1036)
T ss_pred HHHHHHcCCCeEEEcC--CCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999 99999987531 0124689999999999999999998764 33446677777
Q ss_pred HhccCCchhhHHHHHHHHHHHHhc
Q 011163 468 MLQDFSWDADCNDIHISAYTAIKN 491 (492)
Q Consensus 468 ~~~~fsw~~~a~~~~~~~Y~~l~~ 491 (492)
+.++|||+.+|++ |+++|+++.|
T Consensus 1014 m~~dFSW~~~A~~-Y~~LY~~a~~ 1036 (1036)
T PLN02316 1014 MEQDWSWNRPALD-YMELYHSARK 1036 (1036)
T ss_pred HHhhCCHHHHHHH-HHHHHHHHhC
Confidence 7789999999999 5999998865
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=9.2e-63 Score=509.31 Aligned_cols=467 Identities=28% Similarity=0.440 Sum_probs=380.1
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|++|++|+.++||++.++.+|+++|+++||+|.|++|.|+.....+.... .....+.+.++++...++++....+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQL-LVLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCe-EEEEEEeeccCCceeEEEEEEEEeC
Confidence 799999999999999999999999999999999999999999987544321111 1223344567777888899999999
Q ss_pred CeEEEEEccCCCCCCccCCC-----CCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCC
Q 011163 90 GIGVTFIQPLHYSSFFNRES-----VYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 164 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~ 164 (492)
|+++|+++. +.++.+.. .++|.++..++..|++++++++.+++.+|||||+|+|++++++.+++..+...++
T Consensus 80 gv~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDN---PDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcC---hHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 999999974 43444432 4567888999999999999999877789999999999999998877654321223
Q ss_pred CCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCC
Q 011163 165 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 244 (492)
Q Consensus 165 ~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~ 244 (492)
.++|+|+|+|++.+++.++...+..++..+..........++ ...++++.++..||.|++||+.+++++....++.+
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFY---GQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccC---CcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 588999999999888877655444333322100001111111 24678999999999999999999998877666777
Q ss_pred ccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH
Q 011163 245 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 324 (492)
Q Consensus 245 l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~ 324 (492)
+++.+.....++.+|+||+|.+.|.|..+..+...|+.+.+..+..++..+++++|++.+++.++++++||+.++||++.
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~ 313 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDL 313 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHH
Confidence 77777666789999999999999999877777777777777888889999999999975556789999999999999999
Q ss_pred HHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHh
Q 011163 325 LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 404 (492)
Q Consensus 325 li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAm 404 (492)
|++|++++.+.+++|+|+|.| ++.+.+.++++++++ .+++.++++++.++...+|++||++++||.+|+||++.+|||
T Consensus 314 li~a~~~l~~~~~~lvi~G~g-~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAm 391 (476)
T cd03791 314 LLEALPELLELGGQLVILGSG-DPEYEEALRELAARY-PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAM 391 (476)
T ss_pred HHHHHHHHHHcCcEEEEEecC-CHHHHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHh
Confidence 999999998778999999976 446677888888876 478988888988888899999999999999999999999999
Q ss_pred hcCCceEEEecCCCccccccccccc-ccceeeeeecCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhccCCchhhHHH
Q 011163 405 KYGAAPIAVTSSDIEFRHFAEFDHE-STRFSRFISSTFGNISLSQALEEIKN---NPLSWKRKIKDAMLQDFSWDADCND 480 (492)
Q Consensus 405 a~G~PvV~~~~~~gg~~e~v~~~~~-~~g~~G~~~~~~~~~~l~~ai~~~~~---~~~~~~~~~~~a~~~~fsw~~~a~~ 480 (492)
+||+|||++++ ||+.|+|.+... ....+|++|++.|+++|+++|.++++ +++.+.+++++++...|||+.++++
T Consensus 392 a~G~pvI~~~~--gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~ 469 (476)
T cd03791 392 RYGTVPIVRAT--GGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRSAKE 469 (476)
T ss_pred hCCCCCEECcC--CCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHHHHH
Confidence 99999999999 999999874210 01228999999999999999998764 7888999999998889999999999
Q ss_pred HHHHHHHH
Q 011163 481 IHISAYTA 488 (492)
Q Consensus 481 ~~~~~Y~~ 488 (492)
|.++|++
T Consensus 470 -~~~~y~~ 476 (476)
T cd03791 470 -YLELYRS 476 (476)
T ss_pred -HHHHHhC
Confidence 5999973
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-61 Score=476.70 Aligned_cols=468 Identities=27% Similarity=0.386 Sum_probs=392.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++++.|+.|+.++||++.++..|.++|.++|++|.|+.|.++..........+. ...+.+..++......+.+...
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKV-VGKFGVLKGGRAQLFIVKEYGK 79 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccce-eeEeeeeecccceEEEEEeecc
Confidence 899999999999999999999999999999999999999999998433222111121 1233333444433333333332
Q ss_pred -CCeEEEEEccCCCCCCccCC--CCCCCCChhHHHHHHHHHHHHHHHHcC--CCCCEEEEcCchhhhHHHHHHHHHhhcC
Q 011163 89 -SGIGVTFIQPLHYSSFFNRE--SVYGYSDDFERFTYFSRASLDYIVKSR--KQPDVLHIHNWETAIVGPLFWDIFVKQG 163 (492)
Q Consensus 89 -~gv~v~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDiVh~h~~~~~~~~~~~~~~~~~~~ 163 (492)
.|+++++++ ++.++++. ..+.+.|+..||..|+++.++.+.... .+|||||+|+|+++++|.+++..+ .+
T Consensus 80 ~~~v~~~lid---~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~--~~ 154 (487)
T COG0297 80 DGGVDLYLID---NPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRY--RS 154 (487)
T ss_pred cCCCcEEEec---ChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcc--cc
Confidence 339999997 45677762 567889999999999999999886543 489999999999999999886532 11
Q ss_pred CCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCC
Q 011163 164 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 243 (492)
Q Consensus 164 ~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 243 (492)
...+|+|+|+|++.++|.++......++++...+. ...++++. ..+++|.++.+||.|++||+++++++....+|.
T Consensus 155 ~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~~~~---~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~ 230 (487)
T COG0297 155 GYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLEFYG---QISFLKGGLYYADAVTTVSPTYAGEIYTPEYGE 230 (487)
T ss_pred cccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceeeecC---cchhhhhhheeccEEEEECHHHHHhhccccccc
Confidence 36899999999999999998555567788765544 44455442 468999999999999999999999999889999
Q ss_pred CccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHH
Q 011163 244 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 323 (492)
Q Consensus 244 ~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~ 323 (492)
++...+.....+++.|.||+|.+.|+|..+.++..+|+.+.+..+.+++..+++++|++.+.+.|++.++||+..+||+|
T Consensus 231 gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~d 310 (487)
T COG0297 231 GLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLD 310 (487)
T ss_pred cchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchh
Confidence 99999887789999999999999999999999999999998888999999999999999877789999999999999999
Q ss_pred HHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 011163 324 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 403 (492)
Q Consensus 324 ~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEA 403 (492)
.+++|+..+.+..++|++.|.| ++.+++.+..+++.++ +++....++++...+.+++.||++++||++||||++.++|
T Consensus 311 l~~~~i~~~l~~~~~~vilG~g-d~~le~~~~~la~~~~-~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~a 388 (487)
T COG0297 311 LLLEAIDELLEQGWQLVLLGTG-DPELEEALRALASRHP-GRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYA 388 (487)
T ss_pred HHHHHHHHHHHhCceEEEEecC-cHHHHHHHHHHHHhcC-ceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHH
Confidence 9999999999888999999977 7899999999999996 6888888999999999999999999999999999999999
Q ss_pred hhcCCceEEEecCCCcccccccc-ccc--ccceeeeeecCCCHHHHHHHHHHHh---cCHHH-HHHHHHHHHhccCCchh
Q 011163 404 LKYGAAPIAVTSSDIEFRHFAEF-DHE--STRFSRFISSTFGNISLSQALEEIK---NNPLS-WKRKIKDAMLQDFSWDA 476 (492)
Q Consensus 404 ma~G~PvV~~~~~~gg~~e~v~~-~~~--~~g~~G~~~~~~~~~~l~~ai~~~~---~~~~~-~~~~~~~a~~~~fsw~~ 476 (492)
|++|++||+..+ ||++|.|.+ ++. ....+|++|.+.++++|+.+|.+.+ .++.. ++.+..+++..+|+|+.
T Consensus 389 mryGtvpIv~~t--GGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~ 466 (487)
T COG0297 389 MRYGTLPIVRET--GGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDL 466 (487)
T ss_pred HHcCCcceEccc--CCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchh
Confidence 999999999999 999999753 211 1246899999999999999988754 45555 89999999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 011163 477 DCNDIHISAYTAIKN 491 (492)
Q Consensus 477 ~a~~~~~~~Y~~l~~ 491 (492)
.|.+ |.++|+.+..
T Consensus 467 sa~~-y~~lY~~~~~ 480 (487)
T COG0297 467 SAKE-YVELYKPLLS 480 (487)
T ss_pred HHHH-HHHHHHHHhc
Confidence 9999 6999998753
No 9
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.9e-46 Score=397.30 Aligned_cols=446 Identities=14% Similarity=0.123 Sum_probs=289.4
Q ss_pred ccCCCceEEEEeecccc---------ccccCcHHHHHhHHHHHHHHCC--CeEEEEeecCCCCC--cccccccceeeeee
Q 011163 4 WLRNGFHIIHICTEMDP---------LVSIGSLASYVTGLSGALQRKG--HLVEVILPKYACMN--LDGVQGLREIKAEC 70 (492)
Q Consensus 4 ~~~~~mkIl~v~~~~~p---------~~~~GG~~~~~~~l~~~L~~~G--h~V~vi~~~~~~~~--~~~~~~~~~~~~~~ 70 (492)
.+.++|.|++|+.+-.+ -..+||..+||.+|+++|+++| |+|+|+|....... ..+....+.+..
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~-- 242 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTP-- 242 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccc--
Confidence 35567999999977543 1467999999999999999998 89999998653211 111001000000
Q ss_pred eeecCCeeeEEEEEEEEECCeEEEEEccCCCC-CCccCCCCCCCCChhHHHHHHHHHHHHHHHH------------cCCC
Q 011163 71 YSYFNGQLHANKIWIGVVSGIGVTFIQPLHYS-SFFNRESVYGYSDDFERFTYFSRASLDYIVK------------SRKQ 137 (492)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 137 (492)
....+... .....+|+.+++++.- .+ .+..+..++.+ +..|...++..+.+ ....
T Consensus 243 -~~~~~~~~----~~~~~~g~rIvRip~G-P~~~~l~Ke~L~~~------l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~ 310 (1050)
T TIGR02468 243 -RSSENDGD----EMGESSGAYIIRIPFG-PRDKYIPKEELWPY------IPEFVDGALSHIVNMSKVLGEQIGSGHPVW 310 (1050)
T ss_pred -cccccccc----cccCCCCeEEEEeccC-CCCCCcCHHHHHHH------HHHHHHHHHHHHHhhhhhhhhhhccccCCC
Confidence 00000000 0012368888888631 11 13333222322 23444555544332 1124
Q ss_pred CCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCC-CccccCCCCcccCCCCCccchhhH
Q 011163 138 PDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGL-DPARLHRPDRLQDNTKTHLVNILK 216 (492)
Q Consensus 138 pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (492)
|||||+|+|.++.++..++.. .++|+|+|.|++.-.. ...+...|. +.... -..|........+.
T Consensus 311 pDvIHaHyw~sG~aa~~L~~~------lgVP~V~T~HSLgr~K---~~~ll~~g~~~~~~~-----~~~y~~~~Ri~~Ee 376 (1050)
T TIGR02468 311 PYVIHGHYADAGDSAALLSGA------LNVPMVLTGHSLGRDK---LEQLLKQGRMSKEEI-----NSTYKIMRRIEAEE 376 (1050)
T ss_pred CCEEEECcchHHHHHHHHHHh------hCCCEEEECccchhhh---hhhhccccccccccc-----ccccchHHHHHHHH
Confidence 999999999999998877653 7999999999752100 000000010 00000 00010011234567
Q ss_pred HHHhhcCceeccCccchhhhhhcccCCC--ccHHHh-----------hhcCCeeeecCCCCCCCcCCCCCcccccccCcc
Q 011163 217 GGVVYSNKVVIVSSMHSKGRIIRSLSHG--LESTLA-----------IHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAE 283 (492)
Q Consensus 217 ~~~~~ad~vi~vS~~~~~~~~~~~~~~~--l~~~~~-----------~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~ 283 (492)
.++..||.||++|+..++++...+-+.. |.+.+. ....++.|||||||++.|.|.....-......+
T Consensus 377 ~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~ 456 (1050)
T TIGR02468 377 LSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNE 456 (1050)
T ss_pred HHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccc
Confidence 8899999999999988776543211100 001100 013489999999999999985311000000000
Q ss_pred --CccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--c--CcEEEEEecCCCh--------h
Q 011163 284 --DMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--R--GIQFVFTGTNKLP--------S 349 (492)
Q Consensus 284 --~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~--~~~lvivG~g~~~--------~ 349 (492)
.....+.....++..+ .++ ..++|+++||+.++||++.||+|+..+.+ . ++. +|+|+|++. .
T Consensus 457 ~~~~~~~~~~~~~l~r~~-~~p--dkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~ 532 (1050)
T TIGR02468 457 EHPAKPDPPIWSEIMRFF-TNP--RKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSS 532 (1050)
T ss_pred cccccccchhhHHHHhhc-ccC--CCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchH
Confidence 0000011122344333 332 45789999999999999999999999864 1 444 466755321 1
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcC----CEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccc
Q 011163 350 ASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGS----DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFA 424 (492)
Q Consensus 350 ~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~a----di~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v 424 (492)
....+++++++++. ++|.|.|..+.++++.+|+.| |+||+||.+||||++++||||||+|||+|++ ||+.|+|
T Consensus 533 ~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdv--GG~~EII 610 (1050)
T TIGR02468 533 VLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKN--GGPVDIH 610 (1050)
T ss_pred HHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCC--CCcHHHh
Confidence 23457777887764 899999888888889999887 6999999999999999999999999999999 9999998
Q ss_pred cccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 425 EFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 425 ~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
. ++.+|++|++.|+++|+++|..+++|++.+++|+++++. ++|||+.++++ |.+.|..+
T Consensus 611 ~-----~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~-yl~~i~~~ 671 (1050)
T TIGR02468 611 R-----VLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKT-YLSRIASC 671 (1050)
T ss_pred c-----cCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHH
Confidence 7 467899999999999999999999999999999999876 68999999999 48888765
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.7e-45 Score=375.29 Aligned_cols=405 Identities=14% Similarity=0.174 Sum_probs=268.9
Q ss_pred ceEEEEeecc----cc-----ccccCcHHHHHhHHHHHHHHCCC--eEEEEeecCCCCC--cccccccceeeeeeeeecC
Q 011163 9 FHIIHICTEM----DP-----LVSIGSLASYVTGLSGALQRKGH--LVEVILPKYACMN--LDGVQGLREIKAECYSYFN 75 (492)
Q Consensus 9 mkIl~v~~~~----~p-----~~~~GG~~~~~~~l~~~L~~~Gh--~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (492)
++|++++++- +| .+..||+++++.+|+++|+++|| +|+|+|..++... ..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~------------- 67 (439)
T TIGR02472 1 LYLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQP------------- 67 (439)
T ss_pred CeEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCC-------------
Confidence 4677777665 23 24579999999999999999997 9999997643211 010000
Q ss_pred CeeeEEEEEEEEECCeEEEEEccCCCCCCccCCCCCCCCChhH-HHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHH
Q 011163 76 GQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFE-RFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPL 154 (492)
Q Consensus 76 ~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~ 154 (492)
.....+|+++++++.. +. .+.-..... ....+...+.+.+++...+|||||+|++.+++++.+
T Consensus 68 --------~~~~~~gv~v~r~~~~--~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~ 131 (439)
T TIGR02472 68 --------IERIAPGARIVRLPFG--PR------RYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGAR 131 (439)
T ss_pred --------eeEeCCCcEEEEecCC--CC------CCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHH
Confidence 0112478999988521 10 010000111 123444566666654335799999999877777665
Q ss_pred HHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchh
Q 011163 155 FWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSK 234 (492)
Q Consensus 155 ~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 234 (492)
+++. .++|+|+|.|+..... ...+...+.....+. . .+.........+..++.+|.||++|+...+
T Consensus 132 ~~~~------~~~p~V~t~H~~~~~~---~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 197 (439)
T TIGR02472 132 LSRL------LGVPLIFTGHSLGREK---RRRLLAAGLKPQQIE---K--QYNISRRIEAEEETLAHASLVITSTHQEIE 197 (439)
T ss_pred HHHH------hCCCEEEecccccchh---hhhcccCCCChhhhh---h--hcchHHHHHHHHHHHHhCCEEEECCHHHHH
Confidence 5443 6889999999743210 000000011000000 0 000000123456788999999999875443
Q ss_pred hhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEe
Q 011163 235 GRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIF 314 (492)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~g 314 (492)
+......+ .+++++.+||||||.+.|.|.... ......+..+ ++++..+ +.++++++|
T Consensus 198 ~~~~~~~~--------~~~~ki~vIpnGvd~~~f~~~~~~-----------~~~~~~~~~~-~~~~~~~--~~~~i~~vG 255 (439)
T TIGR02472 198 EQYALYDS--------YQPERMQVIPPGVDLSRFYPPQSS-----------EETSEIDNLL-APFLKDP--EKPPILAIS 255 (439)
T ss_pred HHHHhccC--------CCccceEEECCCcChhhcCCCCcc-----------ccchhHHHHH-Hhhcccc--CCcEEEEEc
Confidence 32221111 146789999999999988775210 0011122222 3344433 246899999
Q ss_pred ccccccCHHHHHHHHHHHh--HcCcEEE-EEecCCCh-hH-------HHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHh
Q 011163 315 SDVSDVFLENLKAVVRGAK--MRGIQFV-FTGTNKLP-SA-------SRALVSFQEELKD-GIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 315 rl~~~Kg~~~li~a~~~l~--~~~~~lv-ivG~g~~~-~~-------~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~ 382 (492)
|+.+.||++.|++|+..+. +.+.+++ |+|+|++. .+ .+.+..++++++. ++|.|.|.++.++++.+|+
T Consensus 256 rl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~ 335 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYR 335 (439)
T ss_pred CCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHH
Confidence 9999999999999998643 2234554 56755431 11 1234445555543 7899988888888889998
Q ss_pred cC----CEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHH
Q 011163 383 GS----DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 458 (492)
Q Consensus 383 ~a----di~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~ 458 (492)
.| |+||+||.+|+||++++||||||+|+|+|+. ||+.|+|. ++.+|++++++|+++|+++|..+++|++
T Consensus 336 ~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~--gg~~eiv~-----~~~~G~lv~~~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 336 LAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD--GGPRDIIA-----NCRNGLLVDVLDLEAIASALEDALSDSS 408 (439)
T ss_pred HHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC--CCcHHHhc-----CCCcEEEeCCCCHHHHHHHHHHHHhCHH
Confidence 77 9999999999999999999999999999999 99999997 4568999999999999999999999999
Q ss_pred HHHHHHHHHHh---ccCCchhhHHHHHHHHH
Q 011163 459 SWKRKIKDAML---QDFSWDADCNDIHISAY 486 (492)
Q Consensus 459 ~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y 486 (492)
.+++|+++++. ++|||+.+++++ +++.
T Consensus 409 ~~~~~~~~a~~~~~~~fsw~~~~~~~-~~l~ 438 (439)
T TIGR02472 409 QWQLWSRNGIEGVRRHYSWDAHVEKY-LRIL 438 (439)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH-HHHh
Confidence 99999999875 789999999994 7664
No 11
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=6.6e-45 Score=368.66 Aligned_cols=388 Identities=18% Similarity=0.222 Sum_probs=277.8
Q ss_pred EEEEeecccccc-----ccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEE
Q 011163 11 IIHICTEMDPLV-----SIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 85 (492)
Q Consensus 11 Il~v~~~~~p~~-----~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (492)
|++++....|+. ..||+++++.+|+++|.++||+|+|+|+..+...... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~----~--------------------- 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPPV----V--------------------- 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc----c---------------------
Confidence 567777766642 3699999999999999999999999997643221100 0
Q ss_pred EEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHH-HHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCC
Q 011163 86 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASL-DYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 164 (492)
Q Consensus 86 ~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~ 164 (492)
...+|++++++... .+.. .....-...+..|....+ ..+++...+|||||+|.+.+++++.++++.
T Consensus 56 ~~~~~~~v~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~------ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG---PYEG----LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDR------ 122 (405)
T ss_pred ccCCCcEEEEecCC---Cccc----CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHh------
Confidence 01367788777421 0100 000000011112223333 233322458999999997776665555432
Q ss_pred CCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCC
Q 011163 165 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 244 (492)
Q Consensus 165 ~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~ 244 (492)
.++|+|+|+|+..... .. .+..... .. .. ......+..++.+|.++++|+...+.+... ++
T Consensus 123 ~~~p~v~t~h~~~~~~---~~-----~~~~~~~--~~--~~----~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~-~~-- 183 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVK---NA-----ALADGDT--PE--PE----ARRIGEQQLVDNADRLIANTDEEARDLVRH-YD-- 183 (405)
T ss_pred cCCCEEEeccchHHHH---HH-----hccCCCC--Cc--hH----HHHHHHHHHHHhcCeEEECCHHHHHHHHHH-cC--
Confidence 6889999999753210 00 0000000 00 00 001223567789999999999877766532 22
Q ss_pred ccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH
Q 011163 245 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 324 (492)
Q Consensus 245 l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~ 324 (492)
...+++.+||||+|.+.|.|. .+...+++++++.+ .++|+++||+.++||++.
T Consensus 184 ------~~~~ki~vi~ngvd~~~~~~~-------------------~~~~~~~~~~~~~~--~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 184 ------ADPDRIDVVAPGADLERFRPG-------------------DRATERARLGLPLD--TKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ------CChhhEEEECCCcCHHHcCCC-------------------cHHHHHHhcCCCCC--CcEEEEecCCCcccCHHH
Confidence 135789999999998877654 23345677887643 478999999999999999
Q ss_pred HHHHHHHHhHc--C--cEEEEEecCCC-h-hHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCc
Q 011163 325 LKAVVRGAKMR--G--IQFVFTGTNKL-P-SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 397 (492)
Q Consensus 325 li~a~~~l~~~--~--~~lvivG~g~~-~-~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~g 397 (492)
|++|++++.+. + ++|+|+|++.. . ...+.++++++.++. ++|.|+|..+.+++..+|+.||++++||..|+||
T Consensus 237 li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g 316 (405)
T TIGR03449 237 LLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFG 316 (405)
T ss_pred HHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcC
Confidence 99999998652 3 89999994321 1 345678888887753 6899998888888999999999999999999999
Q ss_pred hHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCch
Q 011163 398 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 475 (492)
Q Consensus 398 lv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~ 475 (492)
++++|||++|+|+|+++. ||+.|++. ++.+|++++++|+++++++|.++++|++.+++++++++. ++|||+
T Consensus 317 ~~~lEAma~G~Pvi~~~~--~~~~e~i~-----~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~ 389 (405)
T TIGR03449 317 LVAMEAQACGTPVVAARV--GGLPVAVA-----DGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWA 389 (405)
T ss_pred hHHHHHHHcCCCEEEecC--CCcHhhhc-----cCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999 99999987 456899999999999999999999999999999988875 689999
Q ss_pred hhHHHHHHHHHHHHh
Q 011163 476 ADCNDIHISAYTAIK 490 (492)
Q Consensus 476 ~~a~~~~~~~Y~~l~ 490 (492)
.+++++ +++|+++.
T Consensus 390 ~~~~~~-~~~y~~~~ 403 (405)
T TIGR03449 390 ATADGL-LSSYRDAL 403 (405)
T ss_pred HHHHHH-HHHHHHHh
Confidence 999995 99999764
No 12
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.1e-44 Score=377.30 Aligned_cols=428 Identities=11% Similarity=0.121 Sum_probs=277.1
Q ss_pred CCceEEEEeecc----ccc---cccCcHHHHHhHHHHHH--------HHCCC----eEEEEeecCCCCCcc-ccccccee
Q 011163 7 NGFHIIHICTEM----DPL---VSIGSLASYVTGLSGAL--------QRKGH----LVEVILPKYACMNLD-GVQGLREI 66 (492)
Q Consensus 7 ~~mkIl~v~~~~----~p~---~~~GG~~~~~~~l~~~L--------~~~Gh----~V~vi~~~~~~~~~~-~~~~~~~~ 66 (492)
+.|||++|+.+. .|. ..+||..+||.+|+++| +++|| +|+|+|...++.... ....+..+
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 348999999987 221 24699999999999985 68999 778999875532110 00000000
Q ss_pred eeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCC-----CCCccCCCCCCCCChhHHHHHHHHHHHHHHHH-cCCCCCE
Q 011163 67 KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY-----SSFFNRESVYGYSDDFERFTYFSRASLDYIVK-SRKQPDV 140 (492)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pDi 140 (492)
...+|+.+.+++.-.. +.|.++..++.| ...|+..+.+.+.. .+.+||+
T Consensus 334 -------------------~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~------l~~f~~~~~~~~~~~~~~~pDl 388 (784)
T TIGR02470 334 -------------------YGTEHAWILRVPFRTENGIILRNWISRFEIWPY------LETFAEDAEKEILAELQGKPDL 388 (784)
T ss_pred -------------------cCCCceEEEEecCCCCcccccccccCHHHHHHH------HHHHHHHHHHHHHHhcCCCCCE
Confidence 0125777777752110 111122112211 23445555554443 3568999
Q ss_pred EEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCC-cccCCCCCccchhhHHHH
Q 011163 141 LHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPD-RLQDNTKTHLVNILKGGV 219 (492)
Q Consensus 141 Vh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (492)
||+|+|.+++++..+++. .++|.|.|.|++...... ..+..+.. .+ +..+. ..+.....++
T Consensus 389 IHahy~d~glva~lla~~------lgVP~v~t~HsL~~~K~~------~~g~~~~~---~e~~~~~~---~r~~ae~~~~ 450 (784)
T TIGR02470 389 IIGNYSDGNLVASLLARK------LGVTQCTIAHALEKTKYP------DSDIYWQE---FEDKYHFS---CQFTADLIAM 450 (784)
T ss_pred EEECCCchHHHHHHHHHh------cCCCEEEECCcchhhccc------cccccccc---chhHHHhh---hhhhHHHHHH
Confidence 999999999998777553 799999999976421100 00111000 00 00000 0012244778
Q ss_pred hhcCceeccCccchhhh---hhcc-----cCC-CccHH---HhhhcCCeeeecCCCCCCCcCCCCCcccc-cccCccCcc
Q 011163 220 VYSNKVVIVSSMHSKGR---IIRS-----LSH-GLEST---LAIHQDKLLVAPCGFDSSTWDPSNDKFLT-ENYCAEDMK 286 (492)
Q Consensus 220 ~~ad~vi~vS~~~~~~~---~~~~-----~~~-~l~~~---~~~~~~~~~vI~nGvd~~~f~p~~~~~~~-~~~~~~~~~ 286 (492)
+.||.||++|....... ...+ +.. +|.++ +..++.|+.+||+|+|.+.|.|.....-. .... ..++
T Consensus 451 ~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~-~~ie 529 (784)
T TIGR02470 451 NAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLH-PEIE 529 (784)
T ss_pred hcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhh-cchh
Confidence 89999999996432210 0000 000 01000 00145789999999999989875311000 0000 0000
Q ss_pred ChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCC------hh---HHHHHH
Q 011163 287 GKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKL------PS---ASRALV 355 (492)
Q Consensus 287 ~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~------~~---~~~~l~ 355 (492)
.---++.+.++.+|+..+++.++|+++||+.+.||++.|++|+.++.+ .+++|+|+|++.+ .+ ..+++.
T Consensus 530 ~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~ 609 (784)
T TIGR02470 530 ELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMH 609 (784)
T ss_pred hhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHH
Confidence 000123345678887655567899999999999999999999987753 3689999995432 11 334677
Q ss_pred HHHHHhCC-CeEEEEecc-CHHHHHHHHh----cCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc
Q 011163 356 SFQEELKD-GIVIFVDSY-DDALLHLIFS----GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE 429 (492)
Q Consensus 356 ~~~~~~~~-~~v~~~~~~-~~~~~~~~~~----~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~ 429 (492)
+++++++. ++|.|+|.. +.....++|+ ++|+||+||++|+||++++||||||+|||+|++ ||+.|+|.
T Consensus 610 ~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~--GG~~EiV~---- 683 (784)
T TIGR02470 610 NLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF--GGPLEIIQ---- 683 (784)
T ss_pred HHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC--CCHHHHhc----
Confidence 77888753 899998754 3333334443 468999999999999999999999999999999 99999987
Q ss_pred ccceeeeeecCCCHHHHHHHHHHHh----cCHHHHHHHHHHHHh---ccCCchhhHHHHHHHHH
Q 011163 430 STRFSRFISSTFGNISLSQALEEIK----NNPLSWKRKIKDAML---QDFSWDADCNDIHISAY 486 (492)
Q Consensus 430 ~~g~~G~~~~~~~~~~l~~ai~~~~----~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y 486 (492)
+|.+|+++++.|+++++++|.+++ +||+.+++++++|+. ++|||+.+++++ ..+.
T Consensus 684 -dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~l-l~l~ 745 (784)
T TIGR02470 684 -DGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERL-LTLA 745 (784)
T ss_pred -CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHH
Confidence 467899999999999999999875 699999999999875 789999999995 6654
No 13
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2.5e-44 Score=369.54 Aligned_cols=378 Identities=15% Similarity=0.188 Sum_probs=266.5
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEE
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 85 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (492)
+++|||++++.. .|....||++.++.+|+++|.++||+|+|+++.... ...
T Consensus 56 ~~~mrI~~~~~~-~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~--------------------------- 106 (465)
T PLN02871 56 SRPRRIALFVEP-SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE--------------------------- 106 (465)
T ss_pred CCCceEEEEECC-cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc---------------------------
Confidence 778999999853 333467999999999999999999999999976432 110
Q ss_pred EEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCC
Q 011163 86 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 165 (492)
Q Consensus 86 ~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~ 165 (492)
..|++++.+.....+ ++.. ..+.+ .+...+.+.+++ .+|||||+|+......+.++..+ ..
T Consensus 107 --~~g~~v~~~~~~~~~-~~~~-~~~~~--------~~~~~l~~~i~~--~kpDiIh~~~~~~~~~~~~~~ak-----~~ 167 (465)
T PLN02871 107 --FHGAKVIGSWSFPCP-FYQK-VPLSL--------ALSPRIISEVAR--FKPDLIHASSPGIMVFGALFYAK-----LL 167 (465)
T ss_pred --ccCceeeccCCcCCc-cCCC-ceeec--------cCCHHHHHHHHh--CCCCEEEECCCchhHHHHHHHHH-----Hh
Confidence 123333222110000 0000 00000 001123334443 68999999984322222222121 26
Q ss_pred CCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCc
Q 011163 166 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 245 (492)
Q Consensus 166 ~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l 245 (492)
++|+|+|.|+..... ....... .+ .. ....+++...+.+|.++++|+...+.+.....
T Consensus 168 ~ip~V~~~h~~~~~~------~~~~~~~--~~-----~~-----~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~---- 225 (465)
T PLN02871 168 CVPLVMSYHTHVPVY------IPRYTFS--WL-----VK-----PMWDIIRFLHRAADLTLVTSPALGKELEAAGV---- 225 (465)
T ss_pred CCCEEEEEecCchhh------hhcccch--hh-----HH-----HHHHHHHHHHhhCCEEEECCHHHHHHHHHcCC----
Confidence 899999999743110 0000000 00 00 01123466678899999999998877654211
Q ss_pred cHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHH
Q 011163 246 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 325 (492)
Q Consensus 246 ~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~l 325 (492)
....++.+||||+|.+.|.|.. .....+.++.... ++.++|+++||+.++||++.|
T Consensus 226 -----~~~~kv~vi~nGvd~~~f~p~~------------------~~~~~~~~~~~~~-~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 226 -----TAANRIRVWNKGVDSESFHPRF------------------RSEEMRARLSGGE-PEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred -----CCcCeEEEeCCccCccccCCcc------------------ccHHHHHHhcCCC-CCCeEEEEeCCCchhhhHHHH
Confidence 1357899999999998887752 1122344443322 234789999999999999999
Q ss_pred HHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 326 KAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 326 i~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
+++++++. +++|+|+|+|+ +.+.+++++++ .+|.|+|..+.+++..+|+.||++|+||.+|+||++++||||
T Consensus 282 i~a~~~~~--~~~l~ivG~G~---~~~~l~~~~~~---~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA 353 (465)
T PLN02871 282 KRVMERLP--GARLAFVGDGP---YREELEKMFAG---TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMA 353 (465)
T ss_pred HHHHHhCC--CcEEEEEeCCh---HHHHHHHHhcc---CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHH
Confidence 99998774 79999999774 45667776664 479999888888899999999999999999999999999999
Q ss_pred cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHI 483 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~ 483 (492)
||+|+|+++. ||+.|++++.+ .+.+|++++++|+++++++|..+++|++.+++|+++++. ++|||+.+++++ .
T Consensus 354 ~G~PVI~s~~--gg~~eiv~~~~--~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l-~ 428 (465)
T PLN02871 354 SGVPVVAARA--GGIPDIIPPDQ--EGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKL-R 428 (465)
T ss_pred cCCCEEEcCC--CCcHhhhhcCC--CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHH-H
Confidence 9999999999 99999987421 267899999999999999999999999999999998876 789999999996 7
Q ss_pred H-HHHHHh
Q 011163 484 S-AYTAIK 490 (492)
Q Consensus 484 ~-~Y~~l~ 490 (492)
+ +|+++.
T Consensus 429 ~~~Y~~~~ 436 (465)
T PLN02871 429 NEQYSAAI 436 (465)
T ss_pred HHHHHHHH
Confidence 6 798874
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.2e-43 Score=357.52 Aligned_cols=374 Identities=18% Similarity=0.213 Sum_probs=270.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++|+..|+|. ..||+++++.+|+++|.++ |+|.|++...... ..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~-------------------------------~~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF-------------------------------DS 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh-------------------------------cC
Confidence 8999999988875 3599999999999999997 7888887542210 12
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
+|++++.+... .. ...+... +..+...+. .. ....++||||+|++.+++.+.++++ +.++|
T Consensus 48 ~~~~~~~~~~~------~~--~~~~~~~---~~~~~~~~~-~~-~~~~~~divh~~~~~~~~~~~~~~~------~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPW------SE--LKEANKA---LGTFSVDLA-MA-NDPVDADVVHSHTWYTFLAGHLAKK------LYDKP 108 (388)
T ss_pred CCeEEEEecCh------hh--ccchhhh---hhhhhHHHH-Hh-hCCCCCCeEeecchhhhhHHHHHHH------hcCCC
Confidence 35555544310 00 0000000 001111111 11 1235799999999777655443322 26899
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+|+|+|+......+..... +.. ... ...+.+..++.+|.++++|+.+.+.+.....+.
T Consensus 109 ~v~~~h~~~~~~~~~~~~~---~~~---------~~~-----~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~----- 166 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQL---GGG---------YKL-----SSWAEKTAIEAADRVIAVSGGMREDILKYYPDL----- 166 (388)
T ss_pred EEEEeeccccccccccccc---ccc---------hhH-----HHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCC-----
Confidence 9999998643211100000 000 000 113456778999999999999877665432121
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
...++.+||||+|.+.|.|. .+...+.+++++. +.++++++||+.++||++.|++|
T Consensus 167 ---~~~~i~vi~ng~~~~~~~~~-------------------~~~~~~~~~~~~~--~~~~i~~~Grl~~~Kg~~~li~a 222 (388)
T TIGR02149 167 ---DPEKVHVIYNGIDTKEYKPD-------------------DGNVVLDRYGIDR--SRPYILFVGRITRQKGVPHLLDA 222 (388)
T ss_pred ---CcceEEEecCCCChhhcCCC-------------------chHHHHHHhCCCC--CceEEEEEcccccccCHHHHHHH
Confidence 34689999999998877664 3345677888864 35789999999999999999999
Q ss_pred HHHHhHcCcEEEEEecCCC-hhHHHHHHHHHHHhCC--CeEEEEe-ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHh
Q 011163 329 VRGAKMRGIQFVFTGTNKL-PSASRALVSFQEELKD--GIVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 404 (492)
Q Consensus 329 ~~~l~~~~~~lvivG~g~~-~~~~~~l~~~~~~~~~--~~v~~~~-~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAm 404 (492)
++++. .+++|+++|+|++ +.+.+.+++...+++. +++.+++ .++.+++..+|++||++++||.+|+||++++|||
T Consensus 223 ~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~ 301 (388)
T TIGR02149 223 VHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAM 301 (388)
T ss_pred HHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHH
Confidence 99886 4789999886543 3456677777666532 3577665 4678888999999999999999999999999999
Q ss_pred hcCCceEEEecCCCcccccccccccccceeeeeecCCCH------HHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Q 011163 405 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN------ISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 475 (492)
Q Consensus 405 a~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~------~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~ 475 (492)
+||+|||+++. ||..|+++ ++.+|++++++|+ ++++++|..+++|++.+++|+++++. ++|||+
T Consensus 302 a~G~PvI~s~~--~~~~e~i~-----~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 302 ACGTPVVASAT--GGIPEVVV-----DGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HcCCCEEEeCC--CCHHHHhh-----CCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999 99999987 3567999999998 89999999999999999999998875 689999
Q ss_pred hhHHHHHHHHHHHH
Q 011163 476 ADCNDIHISAYTAI 489 (492)
Q Consensus 476 ~~a~~~~~~~Y~~l 489 (492)
.+++++ .++|+++
T Consensus 375 ~~~~~~-~~~y~~~ 387 (388)
T TIGR02149 375 SIAKKT-VEMYRKV 387 (388)
T ss_pred HHHHHH-HHHHHhh
Confidence 999995 9999976
No 15
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.2e-44 Score=360.81 Aligned_cols=394 Identities=15% Similarity=0.085 Sum_probs=275.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC--CCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY--ACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
|||++|+..|+|. .||++.++.+|+++|.++||+|+|+|+.. +...... +.. +. ....+
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~--~~~----------~~-----~~~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGE--GYS----------AW-----RYRRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCc--ccc----------cc-----cceee
Confidence 8999999988885 59999999999999999999999999752 1110000 000 00 00111
Q ss_pred EECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHH-HHHcCCCCCEEEEcCchh--hhHHHHHHHHHhhcC
Q 011163 87 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDY-IVKSRKQPDVLHIHNWET--AIVGPLFWDIFVKQG 163 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pDiVh~h~~~~--~~~~~~~~~~~~~~~ 163 (492)
..+|+++++++.. .......+ ........|....... .+....+|||||+|.+.. +..+.++++
T Consensus 62 ~~~~i~v~r~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~------ 128 (412)
T PRK10307 62 SEGGVTVWRCPLY------VPKQPSGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLAR------ 128 (412)
T ss_pred ecCCeEEEEcccc------CCCCccHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHH------
Confidence 3578888888521 00000100 0111111222222222 222236899999997432 223233332
Q ss_pred CCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCC
Q 011163 164 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 243 (492)
Q Consensus 164 ~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 243 (492)
..++|+|+++||..... +...+.... ..+.. ....+++.+++.||.|+++|+...+.+... +
T Consensus 129 ~~~~~~v~~~~d~~~~~------~~~~~~~~~-----~~~~~----~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~--~- 190 (412)
T PRK10307 129 LSGARTWLHIQDYEVDA------AFGLGLLKG-----GKVAR----LATAFERSLLRRFDNVSTISRSMMNKAREK--G- 190 (412)
T ss_pred hhCCCEEEEeccCCHHH------HHHhCCccC-----cHHHH----HHHHHHHHHHhhCCEEEecCHHHHHHHHHc--C-
Confidence 26789999999753211 100111000 00000 012356777889999999999988776542 2
Q ss_pred CccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHH
Q 011163 244 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 323 (492)
Q Consensus 244 ~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~ 323 (492)
..+.++.+||||+|.+.|.|... ..+..++++++++.+ .++++|+||+.++||++
T Consensus 191 -------~~~~~i~vi~ngvd~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~i~~~G~l~~~kg~~ 245 (412)
T PRK10307 191 -------VAAEKVIFFPNWSEVARFQPVAD----------------ADVDALRAQLGLPDG--KKIVLYSGNIGEKQGLE 245 (412)
T ss_pred -------CCcccEEEECCCcCHhhcCCCCc----------------cchHHHHHHcCCCCC--CEEEEEcCccccccCHH
Confidence 13578999999999888776421 123457788888753 47899999999999999
Q ss_pred HHHHHHHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCC----ch
Q 011163 324 NLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL----LQ 398 (492)
Q Consensus 324 ~li~a~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~----gl 398 (492)
.|++|++++.+. +++|+|+|+|+ ..+.+++++++++.++|.|+|..+.+++..+|++||++++||..|++ |.
T Consensus 246 ~li~a~~~l~~~~~~~l~ivG~g~---~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~ 322 (412)
T PRK10307 246 LVIDAARRLRDRPDLIFVICGQGG---GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPS 322 (412)
T ss_pred HHHHHHHHhccCCCeEEEEECCCh---hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcH
Confidence 999999988643 69999999874 35678888887655689999888888999999999999999999985 55
Q ss_pred HHHHHhhcCCceEEEecCCCc--ccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCC
Q 011163 399 VPLKALKYGAAPIAVTSSDIE--FRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFS 473 (492)
Q Consensus 399 v~lEAma~G~PvV~~~~~~gg--~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fs 473 (492)
.++|||+||+|||+|+. || +.|+++ .+|++++++|+++++++|..+++|++.+++|+++++. ++||
T Consensus 323 kl~eama~G~PVi~s~~--~g~~~~~~i~-------~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 393 (412)
T PRK10307 323 KLTNMLASGRNVVATAE--PGTELGQLVE-------GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLD 393 (412)
T ss_pred HHHHHHHcCCCEEEEeC--CCchHHHHHh-------CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Confidence 57999999999999998 65 456664 3689999999999999999999999999999999976 6899
Q ss_pred chhhHHHHHHHHHHHHh
Q 011163 474 WDADCNDIHISAYTAIK 490 (492)
Q Consensus 474 w~~~a~~~~~~~Y~~l~ 490 (492)
|+.++++ |+++|+++.
T Consensus 394 ~~~~~~~-~~~~~~~~~ 409 (412)
T PRK10307 394 KENVLRQ-FIADIRGLV 409 (412)
T ss_pred HHHHHHH-HHHHHHHHh
Confidence 9999999 499999874
No 16
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.2e-43 Score=369.40 Aligned_cols=425 Identities=12% Similarity=0.141 Sum_probs=273.8
Q ss_pred ceEEEEeeccc--c-----ccccCcHHHHHhHHH--------HHHHHCCCeEE----EEeecCCCCCcc-cccccceeee
Q 011163 9 FHIIHICTEMD--P-----LVSIGSLASYVTGLS--------GALQRKGHLVE----VILPKYACMNLD-GVQGLREIKA 68 (492)
Q Consensus 9 mkIl~v~~~~~--p-----~~~~GG~~~~~~~l~--------~~L~~~Gh~V~----vi~~~~~~~~~~-~~~~~~~~~~ 68 (492)
|+|++|+.+.. | ...+||.-+|+.+++ ++|+++||+|+ |+|...++.... +...++.+
T Consensus 280 ~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v-- 357 (815)
T PLN00142 280 FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKV-- 357 (815)
T ss_pred HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceec--
Confidence 69999998753 2 246799999998655 67778899774 888765432110 00111100
Q ss_pred eeeeecCCeeeEEEEEEEEECCeEEEEEccCCC----CCCccCCCCCCCCChhHHHHHHHHHHHHHHH-HcCCCCCEEEE
Q 011163 69 ECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDFERFTYFSRASLDYIV-KSRKQPDVLHI 143 (492)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pDiVh~ 143 (492)
. ..+++.+.+++.-.. +.+.++..++.| ...|+..+.+.+. ..+.+||+||+
T Consensus 358 ------~-----------~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~------L~~f~~~~~~~~~~~~~~~PDlIHa 414 (815)
T PLN00142 358 ------S-----------GTEHSHILRVPFRTEKGILRKWISRFDVWPY------LETFAEDAASEILAELQGKPDLIIG 414 (815)
T ss_pred ------c-----------CCCceEEEecCCCCCccccccccCHHHHHHH------HHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 0 023666666652111 111222222222 2344555555553 34567999999
Q ss_pred cCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcC
Q 011163 144 HNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSN 223 (492)
Q Consensus 144 h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 223 (492)
|+|.+++++..++.. .++|.|.|.|++.-.... . .+..+.... ....+. ........+++.||
T Consensus 415 HYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~~-~-----~~~~~~~~e--~~y~~~---~r~~aE~~a~~~Ad 477 (815)
T PLN00142 415 NYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYP-D-----SDIYWKKFD--DKYHFS---CQFTADLIAMNHAD 477 (815)
T ss_pred CCccHHHHHHHHHHH------hCCCEEEEcccchhhhcc-c-----cCCcccccc--hhhhhh---hchHHHHHHHHhhh
Confidence 999999998888664 799999999976421110 0 011100000 000000 01234567888999
Q ss_pred ceeccCccchhhhh---hcccCC------CccHHH---hhhcCCeeeecCCCCCCCcCCCCCcccccccC--ccCccChH
Q 011163 224 KVVIVSSMHSKGRI---IRSLSH------GLESTL---AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYC--AEDMKGKT 289 (492)
Q Consensus 224 ~vi~vS~~~~~~~~---~~~~~~------~l~~~~---~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~--~~~~~~~~ 289 (492)
.||+.|......+. ..+..+ ++.+++ .....++.+|++|+|.+.|.|..... ..+. ...++...
T Consensus 478 ~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~--~rl~~l~n~I~~~l 555 (815)
T PLN00142 478 FIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQ--KRLTSLHPSIEELL 555 (815)
T ss_pred HHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHH--hhHHhhcccchhhc
Confidence 99998865443221 000000 011110 01245899999999999998753110 0000 00011111
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCCh------hH---HHHHHHHH
Q 011163 290 VCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLP------SA---SRALVSFQ 358 (492)
Q Consensus 290 ~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~------~~---~~~l~~~~ 358 (492)
.+....++.+|+..+.+.++|+++||+.++||++.|++|+.++.+ .+++|+|+|+|.++ +. .+++.+++
T Consensus 556 ~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La 635 (815)
T PLN00142 556 YSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLI 635 (815)
T ss_pred CChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHH
Confidence 122334567887555566889999999999999999999998864 36999999965221 11 13466777
Q ss_pred HHhCC-CeEEEEecc----CHHHHHHHHh-cCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccc
Q 011163 359 EELKD-GIVIFVDSY----DDALLHLIFS-GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTR 432 (492)
Q Consensus 359 ~~~~~-~~v~~~~~~----~~~~~~~~~~-~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g 432 (492)
++++. ++|.|+|.. +.+++..+++ ++|+||+||.+|+||++++||||||+|||+|++ ||+.|+|. +|
T Consensus 636 ~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdv--GG~~EIV~-----dG 708 (815)
T PLN00142 636 EKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQ--GGPAEIIV-----DG 708 (815)
T ss_pred HHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCC--CCHHHHhc-----CC
Confidence 77754 789987643 2244555555 579999999999999999999999999999999 99999987 47
Q ss_pred eeeeeecCCCHHHHHHHHHHH----hcCHHHHHHHHHHHHh---ccCCchhhHHHHHHHH
Q 011163 433 FSRFISSTFGNISLSQALEEI----KNNPLSWKRKIKDAML---QDFSWDADCNDIHISA 485 (492)
Q Consensus 433 ~~G~~~~~~~~~~l~~ai~~~----~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~ 485 (492)
.+|+++++.|+++++++|..+ ++|++.+++|+++|+. ++|||+.+++++ +++
T Consensus 709 ~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rl-l~L 767 (815)
T PLN00142 709 VSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERL-LTL 767 (815)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHH
Confidence 789999999999999998754 5799999999999875 689999999995 655
No 17
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.7e-42 Score=349.69 Aligned_cols=361 Identities=17% Similarity=0.210 Sum_probs=256.3
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|++.|+|. .||+++++.+|+++|.++||+|.|+++..+...... ...+
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~--------------------------~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIR--------------------------YLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcc--------------------------cccC
Confidence 799999989985 699999999999999999999999998643221100 0124
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhH--HHHHHHHHhhcCCCCC
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIV--GPLFWDIFVKQGLEGT 167 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~--~~~~~~~~~~~~~~~~ 167 (492)
|++++.++.. ..... ... . .+..+...+...+. ..+|||||+|+....+. ..++++ ..++
T Consensus 53 ~i~v~~~p~~---~~~~~-~~~--~----~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~~~------~~~~ 114 (398)
T cd03796 53 GLKVYYLPFV---VFYNQ-STL--P----TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLHAR------TMGL 114 (398)
T ss_pred ceeEEEecce---eccCC-ccc--c----chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHhh------hcCC
Confidence 6667666421 01010 001 0 00011122222333 36899999998544332 122222 3689
Q ss_pred cEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 168 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 168 ~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
|+|+|.|+... .... .. . . ...+.+..++.+|.++++|+...+.+... .+
T Consensus 115 ~~v~t~h~~~~--~~~~--------~~--------~-~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~----- 164 (398)
T cd03796 115 KTVFTDHSLFG--FADA--------SS--------I-H-----TNKLLRFSLADVDHVICVSHTSKENTVLR-AS----- 164 (398)
T ss_pred cEEEEeccccc--ccch--------hh--------H-H-----hhHHHHHhhccCCEEEEecHhHhhHHHHH-hC-----
Confidence 99999997421 0000 00 0 0 01234556788999999999876644321 11
Q ss_pred HHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 327 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~ 327 (492)
....++.+||||+|.+.|.|.... . +++.++++++||+.++||++.|++
T Consensus 165 ---~~~~k~~vi~ngvd~~~f~~~~~~--------------------------~--~~~~~~i~~~grl~~~Kg~~~li~ 213 (398)
T cd03796 165 ---LDPERVSVIPNAVDSSDFTPDPSK--------------------------R--DNDKITIVVISRLVYRKGIDLLVG 213 (398)
T ss_pred ---CChhhEEEEcCccCHHHcCCCccc--------------------------C--CCCceEEEEEeccchhcCHHHHHH
Confidence 135789999999998877665210 0 123578999999999999999999
Q ss_pred HHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHh
Q 011163 328 VVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 404 (492)
Q Consensus 328 a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAm 404 (492)
|+..+.+ .+++|+|+|+|+ ..+.+++++++++. ++|.|+|..+.+++..+|++||++++||..|+||++++|||
T Consensus 214 a~~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAm 290 (398)
T cd03796 214 IIPEICKKHPNVRFIIGGDGP---KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAA 290 (398)
T ss_pred HHHHHHhhCCCEEEEEEeCCc---hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHH
Confidence 9998875 379999999764 35667778777653 78999988888889999999999999999999999999999
Q ss_pred hcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHH
Q 011163 405 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 481 (492)
Q Consensus 405 a~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 481 (492)
|||+|||+++. ||.+|++.+ + .++++ +.|+++|+++|.++++++.....+.+++.. ++|||+.++++
T Consensus 291 a~G~PVI~s~~--gg~~e~i~~-----~-~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~- 360 (398)
T cd03796 291 SCGLLVVSTRV--GGIPEVLPP-----D-MILLA-EPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKR- 360 (398)
T ss_pred HcCCCEEECCC--CCchhheeC-----C-ceeec-CCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHH-
Confidence 99999999999 999999863 2 23444 448899999999999876655455555543 78999999999
Q ss_pred HHHHHHHHh
Q 011163 482 HISAYTAIK 490 (492)
Q Consensus 482 ~~~~Y~~l~ 490 (492)
|.++|+++.
T Consensus 361 ~~~~y~~l~ 369 (398)
T cd03796 361 TEKVYDRIL 369 (398)
T ss_pred HHHHHHHHh
Confidence 599999874
No 18
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.2e-41 Score=340.71 Aligned_cols=366 Identities=16% Similarity=0.166 Sum_probs=262.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++++. | ..||+++++.+++++|.++||+|+|++...+...... .
T Consensus 1 mki~~~~~---p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~----------------------------~ 47 (371)
T cd04962 1 MKIGIVCY---P--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY----------------------------S 47 (371)
T ss_pred CceeEEEE---e--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh----------------------------c
Confidence 89999983 4 3599999999999999999999999997533211100 1
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
.++.++.++.. .+.. ..... . .......+.+.++ ..+|||||+|.+.....+.++..+.. +..++|
T Consensus 48 ~~~~~~~~~~~----~~~~---~~~~~--~-~~~~~~~l~~~i~--~~~~divh~~~~~~~~~~~~~~~~~~--~~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYPL---FQYPP--Y-DLALASKIAEVAK--RYKLDLLHVHYAVPHAVAAYLAREIL--GKKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccch---hhcch--h-HHHHHHHHHHHHh--cCCccEEeecccCCccHHHHHHHHhc--CcCCCc
Confidence 12222222110 0000 00000 0 0112234444444 36899999997544334344433221 113799
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+|+|+|+...... +.. . ....+.+..++.+|.++++|+...+.+... +.
T Consensus 114 ~i~~~h~~~~~~~---------~~~----------~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 162 (371)
T cd04962 114 VVTTLHGTDITLV---------GQD----------P-----SFQPATRFSIEKSDGVTAVSESLRQETYEL-FD------ 162 (371)
T ss_pred EEEEEcCCccccc---------ccc----------c-----cchHHHHHHHhhCCEEEEcCHHHHHHHHHh-cC------
Confidence 9999997532100 000 0 012455677889999999999887766542 11
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
...++.+||||+|...|.+. .....+.+++++.+ .++++++||+.+.||++.+++|
T Consensus 163 ---~~~~i~vi~n~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~il~~g~l~~~K~~~~li~a 218 (371)
T cd04962 163 ---ITKEIEVIPNFVDEDRFRPK-------------------PDEALKRRLGAPEG--EKVLIHISNFRPVKRIDDVIRI 218 (371)
T ss_pred ---CcCCEEEecCCcCHhhcCCC-------------------chHHHHHhcCCCCC--CeEEEEecccccccCHHHHHHH
Confidence 35689999999998766553 12234566777653 4779999999999999999999
Q ss_pred HHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 329 VRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 329 ~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
+.++.+. +++|+++|.|++ .+.+++++++++. ++|.|.|..+ ++..+|+.||++++||.+|+||++++|||+|
T Consensus 219 ~~~l~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~ 293 (371)
T cd04962 219 FAKVRKEVPARLLLVGDGPE---RSPAERLARELGLQDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMAC 293 (371)
T ss_pred HHHHHhcCCceEEEEcCCcC---HHHHHHHHHHcCCCceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHc
Confidence 9998764 789999997743 4556777776643 6899887443 4679999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHI 483 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~ 483 (492)
|+|+|+|+. ||..|++. ++.+|++++++|+++++++|..+++|++.+.+|+++++. ++|||+.+++++ .
T Consensus 294 g~PvI~s~~--~~~~e~i~-----~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~-~ 365 (371)
T cd04962 294 GVPVVASNA--GGIPEVVK-----HGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQY-E 365 (371)
T ss_pred CCCEEEeCC--CCchhhhc-----CCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-H
Confidence 999999999 99999987 356799999999999999999999999999999988875 689999999995 8
Q ss_pred HHHHHH
Q 011163 484 SAYTAI 489 (492)
Q Consensus 484 ~~Y~~l 489 (492)
++|+++
T Consensus 366 ~~y~~~ 371 (371)
T cd04962 366 ALYRRL 371 (371)
T ss_pred HHHHhC
Confidence 999864
No 19
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.7e-41 Score=339.25 Aligned_cols=357 Identities=15% Similarity=0.164 Sum_probs=261.2
Q ss_pred eEEEEeeccccc--cccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEE
Q 011163 10 HIIHICTEMDPL--VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGV 87 (492)
Q Consensus 10 kIl~v~~~~~p~--~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (492)
||++++++-+|. ...||++++++++++.|.. +|++++...+..++.+ . .
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~---~-----------------------~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYT---K-----------------------V 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchh---h-----------------------c
Confidence 899998886554 3579999999999999943 9999998766433221 0 1
Q ss_pred ECCeEEEEEccCCCCCCccC--CCCCCCCChhHHHHHHHHHHHHHHHHc-CCCCCEEEEcCchhhhHHHHHHHHHhhcCC
Q 011163 88 VSGIGVTFIQPLHYSSFFNR--ESVYGYSDDFERFTYFSRASLDYIVKS-RKQPDVLHIHNWETAIVGPLFWDIFVKQGL 164 (492)
Q Consensus 88 ~~gv~v~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~ 164 (492)
.+|+.++.+.. +....+ .+.+.. ....+...+...+.+. ..++||||+|+... +... ++. +.
T Consensus 55 ~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~-~~~-----~~ 119 (380)
T PRK15484 55 NDNCDIHYIGF---SRIYKRLFQKWTRL-----DPLPYSQRILNIAHKFTITKDSVIVIHNSMK-LYRQ-IRE-----RA 119 (380)
T ss_pred cCCCceEEEEe---ccccchhhhhhhcc-----CchhHHHHHHHHHHhcCCCCCcEEEEeCcHH-hHHH-HHh-----hC
Confidence 35666666632 111111 000000 0112234444444432 36799999998432 2322 222 13
Q ss_pred CCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCC
Q 011163 165 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 244 (492)
Q Consensus 165 ~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~ 244 (492)
.+.|+|+++|+... ...+..++.+|++|+..++.+... +
T Consensus 120 ~~~~~v~~~h~~~~-------------------------------------~~~~~~~~~ii~~S~~~~~~~~~~-~--- 158 (380)
T PRK15484 120 PQAKLVMHMHNAFE-------------------------------------PELLDKNAKIIVPSQFLKKFYEER-L--- 158 (380)
T ss_pred CCCCEEEEEecccC-------------------------------------hhHhccCCEEEEcCHHHHHHHHhh-C---
Confidence 67899999996310 011234688999999877655431 1
Q ss_pred ccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH
Q 011163 245 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 324 (492)
Q Consensus 245 l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~ 324 (492)
+..++.+||||+|.+.|.+. .+..++++++++.+ ..+++|+||+.+.||++.
T Consensus 159 -------~~~~i~vIpngvd~~~~~~~-------------------~~~~~~~~~~~~~~--~~~il~~Grl~~~Kg~~~ 210 (380)
T PRK15484 159 -------PNADISIVPNGFCLETYQSN-------------------PQPNLRQQLNISPD--ETVLLYAGRISPDKGILL 210 (380)
T ss_pred -------CCCCEEEecCCCCHHHcCCc-------------------chHHHHHHhCCCCC--CeEEEEeccCccccCHHH
Confidence 34679999999998777664 23345677887643 367899999999999999
Q ss_pred HHHHHHHHhH--cCcEEEEEecCCC------hhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCC-CC
Q 011163 325 LKAVVRGAKM--RGIQFVFTGTNKL------PSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFH-DP 395 (492)
Q Consensus 325 li~a~~~l~~--~~~~lvivG~g~~------~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~-E~ 395 (492)
|++|++++.+ .+++|+|+|+|.. ..+.+.++++++.++ .++.|+|..+.+++..+|++||++|+||.+ |+
T Consensus 211 Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~-~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~ 289 (380)
T PRK15484 211 LMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG-DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEA 289 (380)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccc
Confidence 9999999875 3799999997642 234567777777764 789999888888899999999999999985 99
Q ss_pred CchHHHHHhhcCCceEEEecCCCcccccccccccccceeee-eecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---cc
Q 011163 396 LLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRF-ISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QD 471 (492)
Q Consensus 396 ~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~-~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~ 471 (492)
||++++||||||+|+|+|+. ||++|++. ++.+|+ ++++.|+++++++|..+++|++. .+++++++. ++
T Consensus 290 f~~~~lEAma~G~PVI~s~~--gg~~Eiv~-----~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~ 361 (380)
T PRK15484 290 FCMVAVEAMAAGKPVLASTK--GGITEFVL-----EGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSK 361 (380)
T ss_pred cccHHHHHHHcCCCEEEeCC--CCcHhhcc-----cCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHh
Confidence 99999999999999999999 99999987 356788 56889999999999999999985 678888864 79
Q ss_pred CCchhhHHHHHHHHHHHH
Q 011163 472 FSWDADCNDIHISAYTAI 489 (492)
Q Consensus 472 fsw~~~a~~~~~~~Y~~l 489 (492)
|||+.+++++ +++|++.
T Consensus 362 fsw~~~a~~~-~~~l~~~ 378 (380)
T PRK15484 362 YSWEGVTQRF-EEQIHNW 378 (380)
T ss_pred CCHHHHHHHH-HHHHHHh
Confidence 9999999995 9999764
No 20
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=6.2e-41 Score=337.31 Aligned_cols=278 Identities=14% Similarity=0.153 Sum_probs=220.2
Q ss_pred CCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchh
Q 011163 135 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNI 214 (492)
Q Consensus 135 ~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (492)
..+||+||+|.+.++....+++.. +..+.|+++|+|+.+.... . . ...+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---~------~----------~~~~-----~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---E------V----------LNHY-----TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---h------h----------hhhh-----hHH
Confidence 468999999987766555555331 1134577899997542100 0 0 0000 124
Q ss_pred hHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHH
Q 011163 215 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 294 (492)
Q Consensus 215 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~ 294 (492)
++..++.+|.++++|+...+.+.. .+. +++++.+||||+|.+.|.+....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~--~g~--------~~~ki~vi~nGvd~~~f~~~~~~-------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK--MGC--------PPEKIAVSRMGVDMTRFSPRPVK-------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--cCC--------CHHHEEEcCCCCCHHHcCCCccc--------------------
Confidence 556778999999999988776653 221 45789999999998877653100
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEec
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDS 371 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~ 371 (492)
...+...++++||+.+.||++.|++|++.+.+. +++|+|+|+|+ ..+.+++++++++. ++|.|+|.
T Consensus 218 --------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~---~~~~l~~~~~~~~l~~~V~~~G~ 286 (406)
T PRK15427 218 --------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP---WERRLRTLIEQYQLEDVVEMPGF 286 (406)
T ss_pred --------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch---hHHHHHHHHHHcCCCCeEEEeCC
Confidence 011235789999999999999999999999753 79999999773 46778888888753 78999988
Q ss_pred cCHHHHHHHHhcCCEEEECCCC------CCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHH
Q 011163 372 YDDALLHLIFSGSDIILCHSFH------DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNIS 445 (492)
Q Consensus 372 ~~~~~~~~~~~~adi~v~pS~~------E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~ 445 (492)
.+.+++..+|+.||++|+||.. ||||++++||||||+|||+|+. ||++|+|+ +|.+|++++++|+++
T Consensus 287 ~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~--~g~~E~v~-----~~~~G~lv~~~d~~~ 359 (406)
T PRK15427 287 KPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH--SGIPELVE-----ADKSGWLVPENDAQA 359 (406)
T ss_pred CCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC--CCchhhhc-----CCCceEEeCCCCHHH
Confidence 8888899999999999999974 9999999999999999999999 99999987 466899999999999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHh---ccCCchhhHHHHHHHHHHHH
Q 011163 446 LSQALEEIKN-NPLSWKRKIKDAML---QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 446 l~~ai~~~~~-~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~~l 489 (492)
|+++|..+++ |++.+++|+++++. ++|+|+.+++++ .++|+.+
T Consensus 360 la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l-~~~~~~~ 406 (406)
T PRK15427 360 LAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINREL-ASLLQAL 406 (406)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhC
Confidence 9999999999 99999999999875 789999999995 8899763
No 21
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=6.2e-40 Score=337.93 Aligned_cols=460 Identities=16% Similarity=0.160 Sum_probs=343.6
Q ss_pred EEEEeecc-----ccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCccc--------------c-c---cccee-
Q 011163 11 IIHICTEM-----DPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDG--------------V-Q---GLREI- 66 (492)
Q Consensus 11 Il~v~~~~-----~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~--------------~-~---~~~~~- 66 (492)
|+++|.|| .|. .+||+|+......++++.+|.....++..|....-.. + . ....+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 46677666 354 5699999999999999999999999998766421110 0 0 00000
Q ss_pred -----eeeeeeecCCeeeEEEEEEEEECCeEEEEEccCC-CCCCccCC---CCCCCCChhHHH---HHHHHHHHHHHHHc
Q 011163 67 -----KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLH-YSSFFNRE---SVYGYSDDFERF---TYFSRASLDYIVKS 134 (492)
Q Consensus 67 -----~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~-~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~ 134 (492)
....++.+.++...+++|....+++++|+++... ...++.+. .+|+ .++..|+ .+|+.+.++.++++
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~-~D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYG-GDKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1146678888888899999999999999998421 00144443 3454 3445555 89999999999888
Q ss_pred CCCCCEEEEcCchhhhHHHHHHHHHhhcC--------CCCCcEEEEecCCCCCCC--CCchhhh--------hcCCCccc
Q 011163 135 RKQPDVLHIHNWETAIVGPLFWDIFVKQG--------LEGTRILLSCHNLNSLCL--EHPDKLA--------LCGLDPAR 196 (492)
Q Consensus 135 ~~~pDiVh~h~~~~~~~~~~~~~~~~~~~--------~~~~~~v~t~H~~~~~~~--~~~~~~~--------~~~~~~~~ 196 (492)
+.+|||||+|+||+++++..+.+...+.+ ....++|+|+|++.++|. ++.+.+. .++++...
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 88999999999999999887644311100 024679999999999997 7766552 24555543
Q ss_pred cCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCccc
Q 011163 197 LHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFL 276 (492)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~ 276 (492)
+.... .+++.....+++++.++..||.|.+||+.+++- ....++ .+.+.+.....++..|.||||...|.|..+..+
T Consensus 239 ~~~~~-~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v-~~~l~~-~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l 315 (601)
T TIGR02094 239 LLALG-RENPDDPEPFNMTVLALRLSRIANGVSKLHGEV-SRKMWQ-FLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDL 315 (601)
T ss_pred HHhhh-hhccCccCceeHHHHHHHhCCeeeeecHHHHHH-HHHHHH-hhhhhcccccCCccceeCCccccccCCHHHHHH
Confidence 32111 121111124799999999999999999998872 222111 111222223456899999999999999888877
Q ss_pred ccccCccC----------------------ccChHHHHHHHHH---------------------HhCCCCCCCceEEEEE
Q 011163 277 TENYCAED----------------------MKGKTVCKVTLQQ---------------------QLGLSKDASTIVVGCI 313 (492)
Q Consensus 277 ~~~~~~~~----------------------~~~~~~~~~~~~~---------------------~lg~~~~~~~~~i~~~ 313 (492)
..+|..++ ++.|..+|.++.+ ++|++.+++.++++++
T Consensus 316 ~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v 395 (601)
T TIGR02094 316 YERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFA 395 (601)
T ss_pred HHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEE
Confidence 77777766 3677788888877 4666677788999999
Q ss_pred eccccccCHHHHHHHHHHHhH------cCcEEEEEecCCChh------HHHHHHHHHHH--hCCCeEEEEeccCHHHHHH
Q 011163 314 FSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKLPS------ASRALVSFQEE--LKDGIVIFVDSYDDALLHL 379 (492)
Q Consensus 314 grl~~~Kg~~~li~a~~~l~~------~~~~lvivG~g~~~~------~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~ 379 (492)
+|+..+||.+++++++.++.+ .+++||+.|.+ ++. +.+.+.++++. ++ ++|.|+..|+....+.
T Consensus 396 ~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka-~p~d~~gk~~i~~i~~la~~~~~~-~kv~f~~~Yd~~lA~~ 473 (601)
T TIGR02094 396 RRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKA-HPADGEGKEIIQRIVEFSKRPEFR-GRIVFLENYDINLARY 473 (601)
T ss_pred EcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEec-CcccchHHHHHHHHHHHHhcccCC-CCEEEEcCCCHHHHHH
Confidence 999999999999999988863 47999999965 444 77888888887 53 7999999999999999
Q ss_pred HHhcCCEEEE-CCC-CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC------------CCHHH
Q 011163 380 IFSGSDIILC-HSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST------------FGNIS 445 (492)
Q Consensus 380 ~~~~adi~v~-pS~-~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~------------~~~~~ 445 (492)
++++||++++ ||+ +|++|++.|-||..|.+.+.+-. |+..|..+ +.|||.|.+ .|+++
T Consensus 474 i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D--G~~~E~~~------~~nGf~f~~~~~~~~~~~~d~~da~~ 545 (601)
T TIGR02094 474 LVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD--GWWGEGYD------GDNGWAIGDGEEYDDEEEQDRLDAEA 545 (601)
T ss_pred HhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc--CcccccCC------CCcEEEECCCccccccccccCCCHHH
Confidence 9999999999 999 99999999999999998888877 77777642 468999984 77888
Q ss_pred HHHHHHHHh-----cC-----HHHHHHHHHHHHhc---cCCchhhHHHHHHHHH
Q 011163 446 LSQALEEIK-----NN-----PLSWKRKIKDAMLQ---DFSWDADCNDIHISAY 486 (492)
Q Consensus 446 l~~ai~~~~-----~~-----~~~~~~~~~~a~~~---~fsw~~~a~~~~~~~Y 486 (492)
|.++|++.+ ++ |..|.++.++++.. .|||++++++| .++|
T Consensus 546 l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y-~~~y 598 (601)
T TIGR02094 546 LYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREY-VDKF 598 (601)
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHH-HHHh
Confidence 888886533 33 56699999999986 89999999995 6666
No 22
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.4e-39 Score=328.33 Aligned_cols=372 Identities=15% Similarity=0.115 Sum_probs=247.7
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||||+..|++. ..+|+++|.++||+|+++|+....... .
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~-------------------------------~ 40 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP-------------------------------G 40 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC-------------------------------C
Confidence 699999865431 467999999999999999986442210 1
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHH---HcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIV---KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 166 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
|++++++..... .....+.|............++.+.+. ..+.+|||||+|..... +.+++.. +.+
T Consensus 41 ~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~--~~~l~~~-----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPRG----PTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGE--TLFLKDV-----WPD 109 (396)
T ss_pred CeeEEEecCCCC----CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccch--hhhHHHh-----CCC
Confidence 456666642111 011233344433322222222222222 23578999999973221 1223222 257
Q ss_pred CcEEEEecCCCCCCCCCchhhhhcCCCccccCCC---CcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCC
Q 011163 167 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRP---DRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 243 (492)
Q Consensus 167 ~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 243 (492)
+|+|.+.|-+... .... .+......... .+++. ........++.+|.+|++|+..++.+...
T Consensus 110 ~~~v~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ad~vi~~s~~~~~~~~~~---- 174 (396)
T cd03818 110 APLIGYFEFYYRA--EGAD----VGFDPEFPPSLDDALRLRN-----RNALILLALAQADAGVSPTRWQRSTFPAE---- 174 (396)
T ss_pred CCEEEEEeeeecC--CCCC----CCCCCCCCCchhHHHHHHH-----hhhHhHHHHHhCCEEECCCHHHHhhCcHh----
Confidence 8898877632100 0000 00000000000 00000 01123466889999999999877654321
Q ss_pred CccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEec-cccccCH
Q 011163 244 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFS-DVSDVFL 322 (492)
Q Consensus 244 ~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~gr-l~~~Kg~ 322 (492)
...++.+||||+|.+.|.|... .....+...++.. +.++++|+|| +.+.||+
T Consensus 175 --------~~~ki~vI~ngvd~~~f~~~~~-----------------~~~~~~~~~~~~~--~~~~i~~vgR~l~~~Kg~ 227 (396)
T cd03818 175 --------LRSRISVIHDGIDTDRLRPDPQ-----------------ARLRLPNGRVLTP--GDEVITFVARNLEPYRGF 227 (396)
T ss_pred --------hccceEEeCCCccccccCCCch-----------------hhhcccccccCCC--CCeEEEEECCCcccccCH
Confidence 2478999999999998877521 0111111222222 3478999998 9999999
Q ss_pred HHHHHHHHHHhH--cCcEEEEEecCCC---------hhHH-HHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEEC
Q 011163 323 ENLKAVVRGAKM--RGIQFVFTGTNKL---------PSAS-RALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 390 (492)
Q Consensus 323 ~~li~a~~~l~~--~~~~lvivG~g~~---------~~~~-~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~p 390 (492)
+.|++|+.++.+ .+++|+|+|+++. +.+. +.++++...+..++|.|+|..+.+++..+|+.||++++|
T Consensus 228 ~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~ 307 (396)
T cd03818 228 HVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYL 307 (396)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEc
Confidence 999999999875 3899999996320 0122 223333332223799999998888899999999999999
Q ss_pred CCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Q 011163 391 SFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML- 469 (492)
Q Consensus 391 S~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~- 469 (492)
|..|++|++++||||||+|||+|+. ||+.|++. ++.+|+++++.|+++++++|..+++|++.+.+|++++++
T Consensus 308 s~~e~~~~~llEAmA~G~PVIas~~--~g~~e~i~-----~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~ 380 (396)
T cd03818 308 TYPFVLSWSLLEAMACGCLVVGSDT--APVREVIT-----DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRT 380 (396)
T ss_pred CcccccchHHHHHHHCCCCEEEcCC--CCchhhcc-----cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999987 356899999999999999999999999999999999876
Q ss_pred --ccCCchhhHHHH
Q 011163 470 --QDFSWDADCNDI 481 (492)
Q Consensus 470 --~~fsw~~~a~~~ 481 (492)
++|||+.+++++
T Consensus 381 ~~~~fs~~~~~~~~ 394 (396)
T cd03818 381 ALRYDLLSVCLPRQ 394 (396)
T ss_pred HHHhccHHHHHHHH
Confidence 569999999984
No 23
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.5e-39 Score=325.94 Aligned_cols=361 Identities=14% Similarity=0.107 Sum_probs=251.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
-||++|...+ ..||+++++.+|++.|.+.|+++.|++......... .+ ..
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~---~~-----------------------~~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRK---RI-----------------------QR 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHH---HH-----------------------Hh
Confidence 4899999753 469999999999999999999999998532211100 00 01
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
.|++++.+.. .....+ .+...+.+++++ .+|||||+|+..+ +.+.++... .++|
T Consensus 52 ~~i~~~~~~~-------~~~~~~----------~~~~~l~~~l~~--~~~Divh~~~~~~-~~~~~~~~~------~~~~ 105 (374)
T TIGR03088 52 PDVAFYALHK-------QPGKDV----------AVYPQLYRLLRQ--LRPDIVHTRNLAA-LEAQLPAAL------AGVP 105 (374)
T ss_pred cCceEEEeCC-------CCCCCh----------HHHHHHHHHHHH--hCCCEEEEcchhH-HHHHHHHHh------cCCC
Confidence 3666666531 000000 112344445554 6899999997533 222222221 3555
Q ss_pred E-EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 169 I-LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 169 ~-v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
. +++.|+....... +.. . . .....+.....+|.++++|+...+.+... ++
T Consensus 106 ~~i~~~h~~~~~~~~--------~~~---------~-~-----~~~~~~~~~~~~~~~i~vs~~~~~~~~~~-~~----- 156 (374)
T TIGR03088 106 ARIHGEHGRDVFDLD--------GSN---------W-K-----YRWLRRLYRPLIHHYVAVSRDLEDWLRGP-VK----- 156 (374)
T ss_pred eEEEeecCcccccch--------hhH---------H-H-----HHHHHHHHHhcCCeEEEeCHHHHHHHHHh-cC-----
Confidence 4 5555543211000 000 0 0 01122334456899999999887766542 22
Q ss_pred HHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 327 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~ 327 (492)
.+..++.+||||+|.+.|.|... .+...++....+ .+.++++++||+.++||++.|++
T Consensus 157 ---~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~i~~vGrl~~~Kg~~~li~ 214 (374)
T TIGR03088 157 ---VPPAKIHQIYNGVDTERFHPSRG-----------------DRSPILPPDFFA--DESVVVGTVGRLQAVKDQPTLVR 214 (374)
T ss_pred ---CChhhEEEeccCccccccCCCcc-----------------chhhhhHhhcCC--CCCeEEEEEecCCcccCHHHHHH
Confidence 14578999999999888766421 111122222222 23578999999999999999999
Q ss_pred HHHHHhHc------CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHH
Q 011163 328 VVRGAKMR------GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 400 (492)
Q Consensus 328 a~~~l~~~------~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~ 400 (492)
|+.++.+. +++|+++|+|+ ..+.+++.++.++. +++.|.|. .+++..+|++||++++||.+|+||+++
T Consensus 215 a~~~l~~~~~~~~~~~~l~i~G~g~---~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~ 289 (374)
T TIGR03088 215 AFALLVRQLPEGAERLRLVIVGDGP---ARGACEQMVRAAGLAHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTI 289 (374)
T ss_pred HHHHHHHhCcccccceEEEEecCCc---hHHHHHHHHHHcCCcceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHH
Confidence 99988642 68999999774 34567777777653 56776653 345679999999999999999999999
Q ss_pred HHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhh
Q 011163 401 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDAD 477 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~ 477 (492)
+|||+||+|+|+|+. ||..|++. ++.+|++++++|+++++++|..+++|++.+.+++++++. ++|||+.+
T Consensus 290 lEAma~G~Pvv~s~~--~g~~e~i~-----~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~ 362 (374)
T TIGR03088 290 LEAMASGLPVIATAV--GGNPELVQ-----HGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAM 362 (374)
T ss_pred HHHHHcCCCEEEcCC--CCcHHHhc-----CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999 99999987 356799999999999999999999999999999888865 79999999
Q ss_pred HHHHHHHHHHHH
Q 011163 478 CNDIHISAYTAI 489 (492)
Q Consensus 478 a~~~~~~~Y~~l 489 (492)
+++ |+++|+++
T Consensus 363 ~~~-~~~~y~~~ 373 (374)
T TIGR03088 363 VAA-YAGLYDQL 373 (374)
T ss_pred HHH-HHHHHHHh
Confidence 999 59999876
No 24
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.4e-39 Score=328.18 Aligned_cols=375 Identities=17% Similarity=0.144 Sum_probs=249.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
||||++++.+ ..||+++++.+|+++|+++||+|+|+|+..+..... .+ ..
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-----~~---------------------~~ 50 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCF-----EE---------------------TK 50 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcc-----hh---------------------cc
Confidence 8999998753 359999999999999999999999999754321100 00 01
Q ss_pred C-CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCC
Q 011163 89 S-GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGT 167 (492)
Q Consensus 89 ~-gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~ 167 (492)
+ ++.++.+.. +..+ ...........+..+.............++||||+|.+..+.. +++.. .+.
T Consensus 51 ~~~~~i~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~--~~~~~------~~~ 116 (392)
T cd03805 51 DGTLPVRVRGD-----WLPR-SIFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVP--LLKLF------SPS 116 (392)
T ss_pred CCeeEEEEEeE-----EEcc-hhhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHH--HHHHh------cCC
Confidence 1 133333221 0000 0010000000010100111100011246899999997543322 22111 237
Q ss_pred cEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 168 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 168 ~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
|+|++.|.............. .. ... ....+.+..++.+|.|+++|+...+.+......
T Consensus 117 ~~i~~~h~~~~~~~~~~~~~~------~~------~~~----~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~----- 175 (392)
T cd03805 117 KILFYCHFPDQLLAQRGSLLK------RL------YRK----PFDWLEEFTTGMADKIVVNSNFTASVFKKTFPS----- 175 (392)
T ss_pred cEEEEEecChHHhcCCCcHHH------HH------HHH----HHHHHHHHHhhCceEEEEcChhHHHHHHHHhcc-----
Confidence 999999943210000000000 00 000 012345667889999999999887765432111
Q ss_pred HHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 327 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~ 327 (492)
....++.+|+||+|.+.|.|.... . .+...... +..++++++||+.+.||++.+++
T Consensus 176 ---~~~~~~~vi~n~vd~~~~~~~~~~----------------~---~~~~~~~~--~~~~~i~~~grl~~~Kg~~~ll~ 231 (392)
T cd03805 176 ---LAKNPREVVYPCVDTDSFESTSED----------------P---DPGLLIPK--SGKKTFLSINRFERKKNIALAIE 231 (392)
T ss_pred ---cccCCcceeCCCcCHHHcCccccc----------------c---cccccccC--CCceEEEEEeeecccCChHHHHH
Confidence 012334699999998877664210 0 11112222 23578999999999999999999
Q ss_pred HHHHHhHc-----CcEEEEEecCCCh-----hHHHHHHHHHHH-hCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCC
Q 011163 328 VVRGAKMR-----GIQFVFTGTNKLP-----SASRALVSFQEE-LKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDP 395 (492)
Q Consensus 328 a~~~l~~~-----~~~lvivG~g~~~-----~~~~~l~~~~~~-~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~ 395 (492)
|++++.+. +++|+++|+|+.. .+.+++++++++ ++. ++|.|+|..+.+++..+|+.||++++||..|+
T Consensus 232 a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~ 311 (392)
T cd03805 232 AFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEH 311 (392)
T ss_pred HHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCC
Confidence 99998743 7899999976421 344678888877 543 79999999998888899999999999999999
Q ss_pred CchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccC
Q 011163 396 LLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDF 472 (492)
Q Consensus 396 ~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~f 472 (492)
||++++|||+||+|+|+++. ||..|++. ++.+|+++++ |+++++++|..++++++.++++++++++ ++|
T Consensus 312 ~g~~~lEAma~G~PvI~s~~--~~~~e~i~-----~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~ 383 (392)
T cd03805 312 FGIVPLEAMYAGKPVIACNS--GGPLETVV-----DGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKF 383 (392)
T ss_pred CCchHHHHHHcCCCEEEECC--CCcHHHhc-----cCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 99999987 3557899876 8999999999999999999999998875 789
Q ss_pred CchhhHHH
Q 011163 473 SWDADCND 480 (492)
Q Consensus 473 sw~~~a~~ 480 (492)
||+.++++
T Consensus 384 s~~~~~~~ 391 (392)
T cd03805 384 STEAFAER 391 (392)
T ss_pred CHHHHhhh
Confidence 99999876
No 25
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=303.03 Aligned_cols=360 Identities=18% Similarity=0.252 Sum_probs=249.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
++|++|++.|+|. .||++.+++.|++.|.++||.|.++|..|++... ++ ..-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~g-----ir---------------------ylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRVG-----IR---------------------YLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCccc-----ee---------------------eec
Confidence 5899999999995 6999999999999999999999999999887532 11 123
Q ss_pred CCeEEEEEccCCCCCCccCCCCCC--CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYG--YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 166 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
+|++||.++.. . .+ +...+. +.+ +..+ +. .+ ++++..|||.|...+.+.--.+ ...|..|
T Consensus 53 ~glkVyylp~~--v-~~-n~tT~ptv~~~----~Pll-r~---i~--lrE~I~ivhghs~fS~lahe~l----~hartMG 114 (426)
T KOG1111|consen 53 NGLKVYYLPAV--V-GY-NQTTFPTVFSD----FPLL-RP---IL--LRERIEIVHGHSPFSYLAHEAL----MHARTMG 114 (426)
T ss_pred CCceEEEEeee--e-ee-cccchhhhhcc----Cccc-ch---hh--hhhceEEEecCChHHHHHHHHH----HHHHhcC
Confidence 67888877621 0 11 111110 010 0000 11 11 2468899999986554441111 1123468
Q ss_pred CcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCcc
Q 011163 167 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 246 (492)
Q Consensus 167 ~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~ 246 (492)
.++|+|-|++.-.+... .. .. -..+...+...|++||||..-.+...-+..
T Consensus 115 lktVfTdHSlfGfad~~--si--------~~--------------n~ll~~sL~~id~~IcVshtskentvlr~~----- 165 (426)
T KOG1111|consen 115 LKTVFTDHSLFGFADIG--SI--------LT--------------NKLLPLSLANIDRIICVSHTSKENTVLRGA----- 165 (426)
T ss_pred ceEEEeccccccccchh--hh--------hh--------------cceeeeeecCCCcEEEEeecCCCceEEEec-----
Confidence 89999999743111110 00 00 012233466789999999876654432110
Q ss_pred HHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHH
Q 011163 247 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 326 (492)
Q Consensus 247 ~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li 326 (492)
..++++.+|||.++++.|.|.... .+ +.+...++.++|+..+||+|+|+
T Consensus 166 ----L~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~-S~~i~~ivv~sRLvyrKGiDll~ 214 (426)
T KOG1111|consen 166 ----LAPAKVSVIPNAVVTHTFTPDAAD--------------------------KP-SADIITIVVASRLVYRKGIDLLL 214 (426)
T ss_pred ----cCHhHeeeccceeeccccccCccc--------------------------cC-CCCeeEEEEEeeeeeccchHHHH
Confidence 146899999999999999995210 01 12346789999999999999999
Q ss_pred HHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 011163 327 AVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 403 (492)
Q Consensus 327 ~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEA 403 (492)
++++++.+ ++++|+|+|+||.. ..+++..+++. .++|.++|.++.+++.+.|.+-|+|+.||..|+||++++||
T Consensus 215 ~iIp~vc~~~p~vrfii~GDGPk~---i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEA 291 (426)
T KOG1111|consen 215 EIIPSVCDKHPEVRFIIIGDGPKR---IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEA 291 (426)
T ss_pred HHHHHHHhcCCCeeEEEecCCccc---chHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHH
Confidence 99999986 38999999999742 23334444443 28999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHH----HHHhcCHHHHHHHHHHHHhccCCchhhHH
Q 011163 404 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQAL----EEIKNNPLSWKRKIKDAMLQDFSWDADCN 479 (492)
Q Consensus 404 ma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai----~~~~~~~~~~~~~~~~a~~~~fsw~~~a~ 479 (492)
|+||+|||++++ ||++|++..+. .+....+++++.+++ .++...|.... +...+.|+|+..|+
T Consensus 292 aScGL~VVsTrV--GGIpeVLP~d~-------i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h----~~v~~~y~w~dVa~ 358 (426)
T KOG1111|consen 292 ASCGLPVVSTRV--GGIPEVLPEDM-------ITLGEPGPDDLVGAVEKAITKLRTLPLEFH----DRVKKMYSWKDVAE 358 (426)
T ss_pred HhCCCEEEEeec--CCccccCCccc-------eeccCCChHHHHHHHHHHHHHhccCchhHH----HHHHHhccHHHHHH
Confidence 999999999999 99999987431 223334444555554 44544544332 22336799999999
Q ss_pred HHHHHHHHHHhc
Q 011163 480 DIHISAYTAIKN 491 (492)
Q Consensus 480 ~~~~~~Y~~l~~ 491 (492)
++ +++|+++.+
T Consensus 359 rT-ekvy~r~~~ 369 (426)
T KOG1111|consen 359 RT-EKVYDRAAT 369 (426)
T ss_pred HH-HHHHHHHhh
Confidence 98 999998743
No 26
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.5e-38 Score=321.07 Aligned_cols=382 Identities=16% Similarity=0.227 Sum_probs=265.6
Q ss_pred eEEEEeeccccc-----cccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEE
Q 011163 10 HIIHICTEMDPL-----VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 84 (492)
Q Consensus 10 kIl~v~~~~~p~-----~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (492)
||+++.....|. ...||+++++.+|+++|.++||+|.|++.......... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~---~--------------------- 56 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI---V--------------------- 56 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc---c---------------------
Confidence 455555443232 24689999999999999999999999997543211100 0
Q ss_pred EEEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCC
Q 011163 85 IGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 164 (492)
Q Consensus 85 ~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~ 164 (492)
...+++.+++++... .........+. ....+...+...+++...+||+||+|.+..++.+..+++.
T Consensus 57 -~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~------ 122 (398)
T cd03800 57 -ELAPGVRVVRVPAGP-AEYLPKEELWP------YLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR------ 122 (398)
T ss_pred -ccccceEEEeccccc-ccCCChhhcch------hHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh------
Confidence 013466676664210 00111100110 1112334455555542238999999987766665544332
Q ss_pred CCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCC
Q 011163 165 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 244 (492)
Q Consensus 165 ~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~ 244 (492)
.++|+|++.|+......... ..... + ... ......+..++.+|.++++|+...+.+... +.
T Consensus 123 ~~~~~i~~~h~~~~~~~~~~------~~~~~-~---~~~------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~-- 183 (398)
T cd03800 123 LGIPLVHTFHSLGAVKRRHL------GAADT-Y---EPA------RRIEAEERLLRAADRVIASTPQEAEELYSL-YG-- 183 (398)
T ss_pred cCCceEEEeecccccCCccc------ccccc-c---chh------hhhhHHHHHHhhCCEEEEcCHHHHHHHHHH-cc--
Confidence 68999999997542110000 00000 0 000 012345677889999999999877665532 11
Q ss_pred ccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH
Q 011163 245 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 324 (492)
Q Consensus 245 l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~ 324 (492)
....++.+||||+|.+.|.+..+ ....++.++.+. +.++|+++||+.+.||++.
T Consensus 184 ------~~~~~~~vi~ng~~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~i~~~gr~~~~k~~~~ 237 (398)
T cd03800 184 ------AYPRRIRVVPPGVDLERFTPYGR------------------AEARRARLLRDP--DKPRILAVGRLDPRKGIDT 237 (398)
T ss_pred ------ccccccEEECCCCCccceecccc------------------hhhHHHhhccCC--CCcEEEEEcccccccCHHH
Confidence 13456899999999887766421 011134444443 3478999999999999999
Q ss_pred HHHHHHHHhH--cCcEEEEEecCCCh---hHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCch
Q 011163 325 LKAVVRGAKM--RGIQFVFTGTNKLP---SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQ 398 (492)
Q Consensus 325 li~a~~~l~~--~~~~lvivG~g~~~---~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~gl 398 (492)
+++|+..+.+ .+++|+++|++... .....++++++.++. +++.++|..+.+++..+++.||++++||..|+||+
T Consensus 238 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~ 317 (398)
T cd03800 238 LIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGL 317 (398)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCc
Confidence 9999999985 37999999966432 123345666666543 78999998888889999999999999999999999
Q ss_pred HHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Q 011163 399 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 475 (492)
Q Consensus 399 v~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~ 475 (492)
+++|||+||+|+|+++. ||..|++++ +.+|+++++.|+++++++|..+++|++.+++++++++. ++|||+
T Consensus 318 ~l~Ea~a~G~Pvi~s~~--~~~~e~i~~-----~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 318 TALEAMACGLPVVATAV--GGPRDIVVD-----GVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHhcCCCEEECCC--CCHHHHccC-----CCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999 999999873 45799999999999999999999999999999988876 799999
Q ss_pred hhHHHH
Q 011163 476 ADCNDI 481 (492)
Q Consensus 476 ~~a~~~ 481 (492)
.+++++
T Consensus 391 ~~~~~~ 396 (398)
T cd03800 391 RVAARL 396 (398)
T ss_pred HHHHHH
Confidence 999984
No 27
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.6e-39 Score=322.02 Aligned_cols=359 Identities=13% Similarity=0.077 Sum_probs=243.8
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++++..+ ..||+++++.++++.|.+.||+|+++++............+.. ...
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~---------------------~~~ 55 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHN---------------------ALQ 55 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhH---------------------hhc
Confidence 799998753 3599999999999999999999999997532211000000000 001
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHH--HcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCC
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIV--KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGT 167 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~ 167 (492)
|.++ .+ ... .+. .+......... ....+|||||+|++....++. +++ ..++
T Consensus 56 g~~~-~~-----------------~~~-~~~-~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~-~~~------~~~~ 108 (372)
T cd03792 56 GADI-EL-----------------SEE-EKE-IYLEWNEENAERPLLDLDADVVVIHDPQPLALPL-FKK------KRGR 108 (372)
T ss_pred CCCC-CC-----------------CHH-HHH-HHHHHHHHHhccccccCCCCEEEECCCCchhHHH-hhh------cCCC
Confidence 1111 00 001 000 11111111111 113589999999875432211 111 1478
Q ss_pred cEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 168 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 168 ~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
|+|++.|+.... .. . ....+++..++.+|.+++.|+.+.+. ..
T Consensus 109 ~~i~~~H~~~~~---~~----------~--------------~~~~~~~~~~~~~d~~i~~~~~~~~~----~~------ 151 (372)
T cd03792 109 PWIWRCHIDLSS---PN----------R--------------RVWDFLQPYIEDYDAAVFHLPEYVPP----QV------ 151 (372)
T ss_pred eEEEEeeeecCC---Cc----------H--------------HHHHHHHHHHHhCCEEeecHHHhcCC----CC------
Confidence 999999963210 00 0 01134456678899988887433221 11
Q ss_pred HHhhhcCCeeeecCCCCCCC-cCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSST-WDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 326 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~-f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li 326 (492)
...++ +||||+|... +... + .+..+..+++++|++.+ .++++++||+.++||++.|+
T Consensus 152 ----~~~~~-vipngvd~~~~~~~~--------~-------~~~~~~~~~~~~~~~~~--~~~i~~vgrl~~~Kg~~~ll 209 (372)
T cd03792 152 ----PPRKV-IIPPSIDPLSGKNRE--------L-------SPADIEYILEKYGIDPE--RPYITQVSRFDPWKDPFGVI 209 (372)
T ss_pred ----CCceE-EeCCCCCCCccccCC--------C-------CHHHHHHHHHHhCCCCC--CcEEEEEeccccccCcHHHH
Confidence 23444 9999999642 1111 0 12245567788888754 47899999999999999999
Q ss_pred HHHHHHhH--cCcEEEEEecCCC--hhHHHHHHHHHHHhC-CCeEEEEecc--CHHHHHHHHhcCCEEEECCCCCCCchH
Q 011163 327 AVVRGAKM--RGIQFVFTGTNKL--PSASRALVSFQEELK-DGIVIFVDSY--DDALLHLIFSGSDIILCHSFHDPLLQV 399 (492)
Q Consensus 327 ~a~~~l~~--~~~~lvivG~g~~--~~~~~~l~~~~~~~~-~~~v~~~~~~--~~~~~~~~~~~adi~v~pS~~E~~glv 399 (492)
+|+..+.+ .+++|+|+|+|+. +...+.++++.+..+ .++|.+++.. +.+++..+|++||++++||.+|+||++
T Consensus 210 ~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~ 289 (372)
T cd03792 210 DAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLT 289 (372)
T ss_pred HHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHH
Confidence 99998875 3799999997742 223334455554332 2678888765 778888999999999999999999999
Q ss_pred HHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchh
Q 011163 400 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDA 476 (492)
Q Consensus 400 ~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~ 476 (492)
++||||||+|+|+|+. ||+.++|. ++.+|+++++ +++++++|..+++|++.+++|+++++. ++|||+.
T Consensus 290 ~lEA~a~G~Pvv~s~~--~~~~~~i~-----~~~~g~~~~~--~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 290 VTEALWKGKPVIAGPV--GGIPLQIE-----DGETGFLVDT--VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHcCCCEEEcCC--CCchhhcc-----cCCceEEeCC--cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 9999999999999999 99999886 4567898874 558889999999999999999998865 6899999
Q ss_pred hHHHHHHHHHHHH
Q 011163 477 DCNDIHISAYTAI 489 (492)
Q Consensus 477 ~a~~~~~~~Y~~l 489 (492)
+++++ .++|+++
T Consensus 361 ~~~~~-~~~~~~~ 372 (372)
T cd03792 361 HLKDY-LYLISKL 372 (372)
T ss_pred HHHHH-HHHHHhC
Confidence 99995 8999864
No 28
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8.5e-39 Score=320.61 Aligned_cols=374 Identities=13% Similarity=0.032 Sum_probs=229.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
||||+|... ...||+|+.+.+|++.|.++||+|.++........... . .
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~--~-------------------------~ 49 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV--S-------------------------H 49 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc--c-------------------------c
Confidence 899999974 35799999999999999999999999987644322110 0 0
Q ss_pred CCeE-EEEEccCC----C---CCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHH--HHHH-
Q 011163 89 SGIG-VTFIQPLH----Y---SSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGP--LFWD- 157 (492)
Q Consensus 89 ~gv~-v~~i~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~--~~~~- 157 (492)
++++ ++.+.+.. + .+++++..+ ....+..+.+.+ ..+|||||+|..+.+++.. ++..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~~ 117 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNRDLF-----------GNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRFC 117 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcchhhc-----------chHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHHH
Confidence 1111 11111000 0 000000000 001233333433 5799999999876643311 1110
Q ss_pred HHhhcCCCCCcEEEEecCCC-CCCCCCchh----h-hhcCCCccc--cCCCCcccCCCC--CccchhhHHHHhhcCceec
Q 011163 158 IFVKQGLEGTRILLSCHNLN-SLCLEHPDK----L-ALCGLDPAR--LHRPDRLQDNTK--THLVNILKGGVVYSNKVVI 227 (492)
Q Consensus 158 ~~~~~~~~~~~~v~t~H~~~-~~~~~~~~~----~-~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~ad~vi~ 227 (492)
...+.+..++|+|+|+||.. +.|.|.+.. + ..|+.-+.. +.. ........ .......+...+.++.+|+
T Consensus 118 ~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~-~~~d~~~~~~~~k~~~~~~~~~~~~~iV~ 196 (405)
T PRK10125 118 EKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPP-VKVDRAHQLVAGKRQLFREMLALGCQFIS 196 (405)
T ss_pred hhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCC-CccchHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 00001125789999999965 455555421 1 111100000 000 00000000 0000112222345688999
Q ss_pred cCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCc
Q 011163 228 VSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDAST 307 (492)
Q Consensus 228 vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 307 (492)
+|+..++.+.. .+ ...++.+||||||++.+.+... ....+ .+ ++.
T Consensus 197 ~S~~l~~~~~~-~~----------~~~~i~vI~NGid~~~~~~~~~------------------~~~~~----~~--~~~ 241 (405)
T PRK10125 197 PSQHVADAFNS-LY----------GPGRCRIINNGIDMATEAILAE------------------LPPVR----ET--QGK 241 (405)
T ss_pred cCHHHHHHHHH-Hc----------CCCCEEEeCCCcCccccccccc------------------ccccc----cC--CCC
Confidence 99998886543 22 2468999999999753332210 00000 01 234
Q ss_pred eEEEEEec-c-ccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEecc-CHHHHHHHHhcC
Q 011163 308 IVVGCIFS-D-VSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIFSGS 384 (492)
Q Consensus 308 ~~i~~~gr-l-~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~a 384 (492)
++++++|+ + .++||++.|++|+..+. .+++|+|+|.|+. .. ..++.+++.. +.+++..+|++|
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~-~~------------~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSP-FT------------AGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCc-cc------------ccceEEecCcCCHHHHHHHHHhC
Confidence 67888998 3 48899999999999875 4799999997631 10 1356666544 556778999999
Q ss_pred CEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHH-H
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKR-K 463 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~-~ 463 (492)
|+||+||.+|+||++++||||||+|||+|++ ||++|+|++ .+|++++++|+++|++++. ++..++ +
T Consensus 308 DvfV~pS~~Egfp~vilEAmA~G~PVVat~~--gG~~Eiv~~------~~G~lv~~~d~~~La~~~~-----~~~~~~~~ 374 (405)
T PRK10125 308 DALVFSSRVDNYPLILCEALSIGVPVIATHS--DAAREVLQK------SGGKTVSEEEVLQLAQLSK-----PEIAQAVF 374 (405)
T ss_pred CEEEECCccccCcCHHHHHHHcCCCEEEeCC--CChHHhEeC------CcEEEECCCCHHHHHhccC-----HHHHHHhh
Confidence 9999999999999999999999999999999 999999862 3799999999999998643 332222 1
Q ss_pred ---HHHHH---hccCCchhhHHHHHHHHHHHH
Q 011163 464 ---IKDAM---LQDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 464 ---~~~a~---~~~fsw~~~a~~~~~~~Y~~l 489 (492)
..+++ .++|||+.++++ |+++|+++
T Consensus 375 ~~~~~~~r~~~~~~fs~~~~~~~-y~~lY~~l 405 (405)
T PRK10125 375 GTTLAEFSQRSRAAYSGQQMLEE-YVNFYQNL 405 (405)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHH-HHHHHHhC
Confidence 12222 378999999999 59999864
No 29
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.6e-38 Score=330.41 Aligned_cols=385 Identities=13% Similarity=0.090 Sum_probs=246.2
Q ss_pred ccccCCCc-eEEEEeeccccccccCcHHHHHhHHHHHHHHCCC--------------eEEEEeecCCCCCccccccccee
Q 011163 2 EKWLRNGF-HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--------------LVEVILPKYACMNLDGVQGLREI 66 (492)
Q Consensus 2 ~~~~~~~m-kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh--------------~V~vi~~~~~~~~~~~~~~~~~~ 66 (492)
|+.+.++. ||++|.... ..||+|+++.+|+.+|.++|. .|.+++.............+.
T Consensus 274 ~~~~~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~-- 347 (694)
T PRK15179 274 DAGPESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLA-- 347 (694)
T ss_pred cCCCCCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHH--
Confidence 56677778 999999853 459999999999999999954 344443221111100000110
Q ss_pred eeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCCCCCccCCCCCCCCChhH--------HHHHHHHHHHHHHHHcCCCC
Q 011163 67 KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFE--------RFTYFSRASLDYIVKSRKQP 138 (492)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p 138 (492)
-.|++++.+... +..... ...+...... ......+.+.+++++ .+|
T Consensus 348 ---------------------~~Gv~v~~l~~~--~~~~~~-~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kp 401 (694)
T PRK15179 348 ---------------------DAGIPVSVYSDM--QAWGGC-EFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVP 401 (694)
T ss_pred ---------------------hCCCeEEEeccC--CccCcc-cccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCC
Confidence 146666666421 000000 0000000000 011223455555554 689
Q ss_pred CEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEE-EecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHH
Q 011163 139 DVLHIHNWETAIVGPLFWDIFVKQGLEGTRILL-SCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKG 217 (492)
Q Consensus 139 DiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (492)
||||+|...+.+++.+.++. .++|+|+ +.|+.... .. .. +... ....+..
T Consensus 402 DIVH~h~~~a~~lg~lAa~~------~gvPvIv~t~h~~~~~-~~-~~----------------~~~~-----~~~~l~~ 452 (694)
T PRK15179 402 SVVHIWQDGSIFACALAALL------AGVPRIVLSVRTMPPV-DR-PD----------------RYRV-----EYDIIYS 452 (694)
T ss_pred cEEEEeCCcHHHHHHHHHHH------cCCCEEEEEeCCCccc-cc-hh----------------HHHH-----HHHHHHH
Confidence 99999987666665544332 5788876 55753210 00 00 0000 0011112
Q ss_pred HHhhcCceeccC--ccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHH
Q 011163 218 GVVYSNKVVIVS--SMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL 295 (492)
Q Consensus 218 ~~~~ad~vi~vS--~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (492)
.+..++.++++| ...++.+... ++ .+.+++.|||||||.+.|.+... .+. .
T Consensus 453 ~l~~~~~~i~Vs~S~~~~~~l~~~-~g--------~~~~kI~VI~NGVd~~~f~~~~~-----------------~~~-~ 505 (694)
T PRK15179 453 ELLKMRGVALSSNSQFAAHRYADW-LG--------VDERRIPVVYNGLAPLKSVQDDA-----------------CTA-M 505 (694)
T ss_pred HHHhcCCeEEEeCcHHHHHHHHHH-cC--------CChhHEEEECCCcCHHhcCCCch-----------------hhH-H
Confidence 233445444444 4444433321 22 24578999999999877765310 111 1
Q ss_pred HHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEecc
Q 011163 296 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSY 372 (492)
Q Consensus 296 ~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~ 372 (492)
+..+......+.++|+++||+.++||++.|++|+.++.+ .+++|+|+|+|+ ..+.+++++++++. ++|+|+|..
T Consensus 506 ~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~---~~~~L~~l~~~lgL~~~V~flG~~ 582 (694)
T PRK15179 506 MAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP---LLESVREFAQRLGMGERILFTGLS 582 (694)
T ss_pred HHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc---chHHHHHHHHHcCCCCcEEEcCCc
Confidence 111111111235789999999999999999999998875 379999999774 45678888888764 789988654
Q ss_pred CHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCH--HHHHHHH
Q 011163 373 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN--ISLSQAL 450 (492)
Q Consensus 373 ~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~--~~l~~ai 450 (492)
+ ++..+|+.||++|+||.+|+||++++|||+||+|||+|+. ||+.|+|. ++.+|++++++|+ ++++++|
T Consensus 583 -~-dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~--gG~~EiV~-----dg~~GlLv~~~d~~~~~La~aL 653 (694)
T PRK15179 583 -R-RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLA--GGAGEAVQ-----EGVTGLTLPADTVTAPDVAEAL 653 (694)
T ss_pred -c-hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECC--CChHHHcc-----CCCCEEEeCCCCCChHHHHHHH
Confidence 3 4678999999999999999999999999999999999999 99999997 4668999998774 5888888
Q ss_pred HHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHHHHHH
Q 011163 451 EEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYT 487 (492)
Q Consensus 451 ~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~ 487 (492)
..++++......++++++. ++|||+.++++ |+++|+
T Consensus 654 ~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~-~~~lY~ 692 (694)
T PRK15179 654 ARIHDMCAADPGIARKAADWASARFSLNQMIAS-TVRCYQ 692 (694)
T ss_pred HHHHhChhccHHHHHHHHHHHHHhCCHHHHHHH-HHHHhC
Confidence 8877655544556666654 68999999999 499996
No 30
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.8e-39 Score=318.87 Aligned_cols=383 Identities=15% Similarity=0.075 Sum_probs=233.3
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCC-CeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEE
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 84 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~G-h~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (492)
+++|||+++|..|.|+ .+|+.+.+..++..|.++| |+|+|++|.++...+....+.. ..|... ..+...++
T Consensus 2 ~~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~---~~f~~~-~~~e~~~~-- 73 (462)
T PLN02846 2 QKKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNK---ITFSSP-SEQEAYVR-- 73 (462)
T ss_pred CCCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCcccccccccccc---ccccCc-hhhhhhhh--
Confidence 3569999999999997 5899999999999999999 8999999987532110000000 000000 00000000
Q ss_pred EEEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCc-hhhhHHHHHHHHHhhcC
Q 011163 85 IGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQG 163 (492)
Q Consensus 85 ~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~-~~~~~~~~~~~~~~~~~ 163 (492)
...+-.++++.+...+ +.+.+ ++. ..+..+....+.+.+. ..+|||||+|+. +.++... ..+.. .
T Consensus 74 --~~~~~~v~r~~s~~~p--~yp~r-~~~---~~r~~~~~~~i~~~l~--~~~pDVIHv~tP~~LG~~~~-g~~~~--~- 139 (462)
T PLN02846 74 --QWLEERISFLPKFSIK--FYPGK-FST---DKRSILPVGDISETIP--DEEADIAVLEEPEHLTWYHH-GKRWK--T- 139 (462)
T ss_pred --hhccCeEEEecccccc--cCccc-ccc---cccccCChHHHHHHHH--hcCCCEEEEcCchhhhhHHH-HHHHH--h-
Confidence 0112233444321111 11110 000 0011112244455554 378999999983 3343200 11111 1
Q ss_pred CCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHH--hhcCceeccCccchhhhhhccc
Q 011163 164 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGV--VYSNKVVIVSSMHSKGRIIRSL 241 (492)
Q Consensus 164 ~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~vi~vS~~~~~~~~~~~~ 241 (492)
..++ +|.|+|+.. ....+.. ..+..... ....+...+ .++|.++++|....+ +.
T Consensus 140 k~~~-vV~tyHT~y-~~Y~~~~---~~g~~~~~--------------l~~~~~~~~~r~~~d~vi~pS~~~~~-l~---- 195 (462)
T PLN02846 140 KFRL-VIGIVHTNY-LEYVKRE---KNGRVKAF--------------LLKYINSWVVDIYCHKVIRLSAATQD-YP---- 195 (462)
T ss_pred cCCc-EEEEECCCh-HHHHHHh---ccchHHHH--------------HHHHHHHHHHHHhcCEEEccCHHHHH-Hh----
Confidence 1344 888999722 1100000 00000000 001111122 248999999974432 32
Q ss_pred CCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccC
Q 011163 242 SHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVF 321 (492)
Q Consensus 242 ~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg 321 (492)
......+||||.+.|+|.. +. .++..+ +.+...+.++|+||+.++||
T Consensus 196 ------------~~~i~~v~GVd~~~f~~~~-------------------~~-~~~~~~-~~~~~~~~~l~vGRL~~eK~ 242 (462)
T PLN02846 196 ------------RSIICNVHGVNPKFLEIGK-------------------LK-LEQQKN-GEQAFTKGAYYIGKMVWSKG 242 (462)
T ss_pred ------------hCEEecCceechhhcCCCc-------------------cc-HhhhcC-CCCCcceEEEEEecCcccCC
Confidence 2233446899998887752 11 222222 22222356899999999999
Q ss_pred HHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchH
Q 011163 322 LENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQV 399 (492)
Q Consensus 322 ~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv 399 (492)
++.||+|++++.+ .+++|+|+|+|++ .+++++++++++.+ +.++.+....+ .+|+.+|+||+||.+|+||+|
T Consensus 243 ~~~Li~a~~~l~~~~~~~~l~ivGdGp~---~~~L~~~a~~l~l~-~~vf~G~~~~~--~~~~~~DvFv~pS~~Et~g~v 316 (462)
T PLN02846 243 YKELLKLLHKHQKELSGLEVDLYGSGED---SDEVKAAAEKLELD-VRVYPGRDHAD--PLFHDYKVFLNPSTTDVVCTT 316 (462)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEECCCcc---HHHHHHHHHhcCCc-EEEECCCCCHH--HHHHhCCEEEECCCcccchHH
Confidence 9999999998875 3789999998864 56788888877433 33344554332 688999999999999999999
Q ss_pred HHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhHH
Q 011163 400 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCN 479 (492)
Q Consensus 400 ~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~ 479 (492)
++||||||+|||+++. ++ .|++. ++.+|+++ .|.+++++++..+++++. .+++..++ ++|||+.+++
T Consensus 317 ~lEAmA~G~PVVa~~~--~~-~~~v~-----~~~ng~~~--~~~~~~a~ai~~~l~~~~--~~~~~~a~-~~~SWe~~~~ 383 (462)
T PLN02846 317 TAEALAMGKIVVCANH--PS-NEFFK-----QFPNCRTY--DDGKGFVRATLKALAEEP--APLTDAQR-HELSWEAATE 383 (462)
T ss_pred HHHHHHcCCcEEEecC--CC-cceee-----cCCceEec--CCHHHHHHHHHHHHccCc--hhHHHHHH-HhCCHHHHHH
Confidence 9999999999999998 76 48876 35678887 478899999999987532 23333333 5899999999
Q ss_pred HHHHHHHH
Q 011163 480 DIHISAYT 487 (492)
Q Consensus 480 ~~~~~~Y~ 487 (492)
++ +++|+
T Consensus 384 ~l-~~~~~ 390 (462)
T PLN02846 384 RF-LRVAD 390 (462)
T ss_pred HH-HHHhc
Confidence 95 88987
No 31
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=3.5e-38 Score=310.89 Aligned_cols=330 Identities=13% Similarity=0.066 Sum_probs=231.1
Q ss_pred ceEEEEeecccc--ccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 9 FHIIHICTEMDP--LVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 9 mkIl~v~~~~~p--~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
|||++|++.+.| ....||+++++.+|+++|.+.||+|.++++........ ..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~~---------------------- 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----LV---------------------- 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----ee----------------------
Confidence 899999998754 34579999999999999999999999999864421110 00
Q ss_pred EECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC
Q 011163 87 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 166 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
...... .. ................+.+.++ ..+|||||+|.+..... +.+ ..+
T Consensus 55 -----~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~---~~~------~~~ 107 (335)
T cd03802 55 -----PVVPEP------LR-----LDAPGRDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP---FAR------PLP 107 (335)
T ss_pred -----eccCCC------cc-----cccchhhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh---hhc------ccC
Confidence 000000 00 0000000011111233333333 36899999998655443 212 268
Q ss_pred CcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCcc
Q 011163 167 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 246 (492)
Q Consensus 167 ~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~ 246 (492)
+|+|+|+|+...... .........++.++++|+...+....
T Consensus 108 ~~~v~~~h~~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~-------- 148 (335)
T cd03802 108 VPVVTTLHGPPDPEL-------------------------------LKLYYAARPDVPFVSISDAQRRPWPP-------- 148 (335)
T ss_pred CCEEEEecCCCCccc-------------------------------chHHHhhCcCCeEEEecHHHHhhccc--------
Confidence 899999997532100 00123345577889999877654321
Q ss_pred HHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHH
Q 011163 247 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 326 (492)
Q Consensus 247 ~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li 326 (492)
..++.+||||+|.+.|.+.. .+...++++||+.+.||++.++
T Consensus 149 ------~~~~~vi~ngvd~~~~~~~~--------------------------------~~~~~i~~~Gr~~~~Kg~~~li 190 (335)
T cd03802 149 ------LPWVATVHNGIDLDDYPFRG--------------------------------PKGDYLLFLGRISPEKGPHLAI 190 (335)
T ss_pred ------ccccEEecCCcChhhCCCCC--------------------------------CCCCEEEEEEeeccccCHHHHH
Confidence 26889999999988776531 1235789999999999999999
Q ss_pred HHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhC--CCeEEEEeccCHHHHHHHHhcCCEEEECCC-CCCCchHHHHH
Q 011163 327 AVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK--DGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKA 403 (492)
Q Consensus 327 ~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~adi~v~pS~-~E~~glv~lEA 403 (492)
+++++. +++|+|+|.|+.. +.+........ .++|.|+|..+.+++..+|+.+|++++||. .|+||++++||
T Consensus 191 ~~~~~~---~~~l~i~G~~~~~---~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEA 264 (335)
T cd03802 191 RAARRA---GIPLKLAGPVSDP---DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEA 264 (335)
T ss_pred HHHHhc---CCeEEEEeCCCCH---HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHH
Confidence 998653 7899999977532 22333333321 379999999888888899999999999998 59999999999
Q ss_pred hhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhHHHHHH
Q 011163 404 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHI 483 (492)
Q Consensus 404 ma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~~~ 483 (492)
||||+|||+++. ||..|+++ ++.+|+++++ +++++++|..+.+.+.. .+++...++|||+.++++ |+
T Consensus 265 ma~G~PvI~~~~--~~~~e~i~-----~~~~g~l~~~--~~~l~~~l~~l~~~~~~---~~~~~~~~~~s~~~~~~~-~~ 331 (335)
T cd03802 265 MACGTPVIAFRR--GAVPEVVE-----DGVTGFLVDS--VEELAAAVARADRLDRA---ACRRRAERRFSAARMVDD-YL 331 (335)
T ss_pred HhcCCCEEEeCC--CCchhhee-----CCCcEEEeCC--HHHHHHHHHHHhccHHH---HHHHHHHHhCCHHHHHHH-HH
Confidence 999999999999 99999987 3567999986 88999999998664321 222223488999999999 59
Q ss_pred HHHH
Q 011163 484 SAYT 487 (492)
Q Consensus 484 ~~Y~ 487 (492)
++|+
T Consensus 332 ~~y~ 335 (335)
T cd03802 332 ALYR 335 (335)
T ss_pred HHhC
Confidence 9984
No 32
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.2e-37 Score=310.58 Aligned_cols=356 Identities=18% Similarity=0.176 Sum_probs=244.0
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|..+++|. ..||+++++.+|+++|.++||+|+|+++........ ...+
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~---------------------------~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE---------------------------TEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc---------------------------cccC
Confidence 799998776654 469999999999999999999999999764322110 0246
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHH-HHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGP-LFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~-~~~~~~~~~~~~~~~ 168 (492)
|++++.++.. ..... ..+.+....+..... .++|++|+|.......+. .+.+ ..+.|
T Consensus 53 ~i~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~------~~~~~ 110 (363)
T cd04955 53 GVRLIHIPAP-------EIGGL------GTIIYDILAILHALF---VKRDIDHVHALGPAIAPFLPLLR------LKGKK 110 (363)
T ss_pred CceEEEcCCC-------Cccch------hhhHHHHHHHHHHHh---ccCCeEEEEecCccHHHHHHHHH------hcCCC
Confidence 7777776421 00000 000111111222221 244555555422221111 1111 15889
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+++++|+..+... .+ +.. ... ......+.+++.+|.++++|+...+.+... ++
T Consensus 111 ~v~~~h~~~~~~~----~~---~~~---------~~~----~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~------ 163 (363)
T cd04955 111 VVVNMDGLEWKRA----KW---GRP---------AKR----YLKFGEKLAVKFADRLIADSPGIKEYLKEK-YG------ 163 (363)
T ss_pred EEEEccCcceeec----cc---ccc---------hhH----HHHHHHHHHHhhccEEEeCCHHHHHHHHHh-cC------
Confidence 9999998643210 00 000 000 011234566789999999999988776432 22
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
.+..+||||+|...+.+. ...++.++++++ ..++++||+.+.||++.|++|
T Consensus 164 -----~~~~~i~ngv~~~~~~~~---------------------~~~~~~~~~~~~---~~i~~~G~~~~~Kg~~~li~a 214 (363)
T cd04955 164 -----RDSTYIPYGADHVVSSEE---------------------DEILKKYGLEPG---RYYLLVGRIVPENNIDDLIEA 214 (363)
T ss_pred -----CCCeeeCCCcChhhcchh---------------------hhhHHhcCCCCC---cEEEEEecccccCCHHHHHHH
Confidence 223899999997654331 123344555432 457899999999999999999
Q ss_pred HHHHhHcCcEEEEEecCCC-hhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCC-CCCchHHHHHhh
Q 011163 329 VRGAKMRGIQFVFTGTNKL-PSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFH-DPLLQVPLKALK 405 (492)
Q Consensus 329 ~~~l~~~~~~lvivG~g~~-~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~-E~~glv~lEAma 405 (492)
++++.+ +++|+++|+|+. ..+.+.+++ .+. .++|+++|..+.+++..+++.||++++||.. |+||++++|||+
T Consensus 215 ~~~l~~-~~~l~ivG~~~~~~~~~~~~~~---~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma 290 (363)
T cd04955 215 FSKSNS-GKKLVIVGNADHNTPYGKLLKE---KAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMA 290 (363)
T ss_pred HHhhcc-CceEEEEcCCCCcchHHHHHHH---HhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHH
Confidence 998875 799999997632 223333332 222 3799999988888888999999999999998 999999999999
Q ss_pred cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIH 482 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~ 482 (492)
||+|||+|+. |+..|++++ +|+++++.|+ ++++|..+++|++.+.+++++++. ++|||+.++++ |
T Consensus 291 ~G~PvI~s~~--~~~~e~~~~-------~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~-~ 358 (363)
T cd04955 291 YGCPVLASDN--PFNREVLGD-------KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQ-Y 358 (363)
T ss_pred cCCCEEEecC--CccceeecC-------CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH-H
Confidence 9999999999 999998852 5788888775 999999999999999999988875 57999999999 4
Q ss_pred HHHHH
Q 011163 483 ISAYT 487 (492)
Q Consensus 483 ~~~Y~ 487 (492)
+++|+
T Consensus 359 ~~~y~ 363 (363)
T cd04955 359 EELYK 363 (363)
T ss_pred HHHhC
Confidence 88884
No 33
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2.4e-37 Score=307.49 Aligned_cols=340 Identities=17% Similarity=0.119 Sum_probs=245.0
Q ss_pred cccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCC
Q 011163 22 VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY 101 (492)
Q Consensus 22 ~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~ 101 (492)
...||+++++.+|+++|.++||+|.++++..... .. + ...|++++.+..
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~----~-----------------------~~~~~~~~~~~~--- 55 (355)
T cd03819 7 LESGGVERGTLELARALVERGHRSLVASAGGRLV-AE----L-----------------------EAEGSRHIKLPF--- 55 (355)
T ss_pred hccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchH-HH----H-----------------------HhcCCeEEEccc---
Confidence 3459999999999999999999999998743211 00 0 012445444431
Q ss_pred CCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCC
Q 011163 102 SSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCL 181 (492)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~ 181 (492)
...... ........+...+++ .+||+||+|+...++.+.+..+ ..++|+++++|+.....
T Consensus 56 ----~~~~~~-------~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~- 115 (355)
T cd03819 56 ----ISKNPL-------RILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSVN- 115 (355)
T ss_pred ----cccchh-------hhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhhH-
Confidence 000111 111122334444443 6899999998655555343332 25899999999753100
Q ss_pred CCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecC
Q 011163 182 EHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPC 261 (492)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~n 261 (492)
.+.+..+..+|.++++|+...+.+.. .++ .+..++.+|||
T Consensus 116 -------------------------------~~~~~~~~~~~~vi~~s~~~~~~~~~-~~~--------~~~~k~~~i~n 155 (355)
T cd03819 116 -------------------------------FRYNAIMARGDRVIAVSNFIADHIRE-NYG--------VDPDRIRVIPR 155 (355)
T ss_pred -------------------------------HHHHHHHHhcCEEEEeCHHHHHHHHH-hcC--------CChhhEEEecC
Confidence 02234567899999999988876653 222 14578999999
Q ss_pred CCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEE
Q 011163 262 GFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQF 339 (492)
Q Consensus 262 Gvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~l 339 (492)
|+|...|.+... .......++++++.+. +.++++++||+.++||++.+++|+..+.+ .+++|
T Consensus 156 gi~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l 219 (355)
T cd03819 156 GVDLDRFDPGAV--------------PPERILALAREWPLPK--GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL 219 (355)
T ss_pred CccccccCcccc--------------chHHHHHHHHHcCCCC--CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE
Confidence 999887765421 0112223667777654 35789999999999999999999999986 47999
Q ss_pred EEEecCCC-hhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECC-CCCCCchHHHHHhhcCCceEEEecC
Q 011163 340 VFTGTNKL-PSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHS-FHDPLLQVPLKALKYGAAPIAVTSS 416 (492)
Q Consensus 340 vivG~g~~-~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS-~~E~~glv~lEAma~G~PvV~~~~~ 416 (492)
+|+|.++. ..+.+.+.+.+++++. ++|.++|. .+++..+|++||++++|| ..|+||++++|||+||+|+|+++.
T Consensus 220 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~- 296 (355)
T cd03819 220 LIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH- 296 (355)
T ss_pred EEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC-
Confidence 99997643 2344555666666543 68998866 445679999999999999 799999999999999999999999
Q ss_pred CCcccccccccccccceeeeeecCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHh---ccCCchhh
Q 011163 417 DIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK-NNPLSWKRKIKDAML---QDFSWDAD 477 (492)
Q Consensus 417 ~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~-~~~~~~~~~~~~a~~---~~fsw~~~ 477 (492)
||..|++.+ +.+|++++++|+++++++|..++ .+++.+.+++++|+. ++|||+.|
T Consensus 297 -~~~~e~i~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 297 -GGARETVRP-----GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred -CCcHHHHhC-----CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 999999873 45799999999999999996554 589999999998876 78999875
No 34
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-37 Score=319.48 Aligned_cols=292 Identities=15% Similarity=0.122 Sum_probs=218.1
Q ss_pred CCCCEEEEcCc-hhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhh-hhcCCC--ccccCCCCcccCCCCCcc
Q 011163 136 KQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLD--PARLHRPDRLQDNTKTHL 211 (492)
Q Consensus 136 ~~pDiVh~h~~-~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~ 211 (492)
.++||||+|+. .+++.+.++++. .++|+|+|.|+... .+.. ...... ...+. .....+ .
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~------~~~p~I~t~Hg~~~-----~e~~~~~~~~~~~~~~~~-~~~~~~-----~ 234 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR------RGTPFLLTEHGIYT-----RERKIELLQADWEMSYFR-RLWIRF-----F 234 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH------hCCCEEEecCCccH-----HHHHHHHHhcccchHHHH-HHHHHH-----H
Confidence 57899999974 344554444332 68999999998532 1100 000000 00000 000000 1
Q ss_pred chhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHH
Q 011163 212 VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVC 291 (492)
Q Consensus 212 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~ 291 (492)
..+.+.+++.||.|+++|+...+.... .+ .+++++.+||||+|.+.|.+....
T Consensus 235 ~~l~~~~~~~ad~Ii~~s~~~~~~~~~--~g--------~~~~ki~vIpNgid~~~f~~~~~~----------------- 287 (475)
T cd03813 235 ESLGRLAYQAADRITTLYEGNRERQIE--DG--------ADPEKIRVIPNGIDPERFAPARRA----------------- 287 (475)
T ss_pred HHHHHHHHHhCCEEEecCHHHHHHHHH--cC--------CCHHHeEEeCCCcCHHHcCCcccc-----------------
Confidence 234567788999999999987654432 22 145789999999998877664200
Q ss_pred HHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCC-ChhHHHHHHHHHHHhCC-CeEE
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNK-LPSASRALVSFQEELKD-GIVI 367 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~-~~~~~~~l~~~~~~~~~-~~v~ 367 (492)
... .+.++++++||+.+.||++.+++|++.+.+ .+++|+|+|+|+ ++.+.+++++++++++. ++|.
T Consensus 288 --------~~~--~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~ 357 (475)
T cd03813 288 --------RPE--KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVK 357 (475)
T ss_pred --------ccC--CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEE
Confidence 011 235789999999999999999999999875 379999999774 45677888899888764 7999
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc-ccceeeeeecCCCHHHH
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-STRFSRFISSTFGNISL 446 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~~g~~G~~~~~~~~~~l 446 (492)
|+| .+++..+|+.+|++++||..|+||++++||||||+|+|+|+. ||+.|++.+... .-|.+|+++++.|++++
T Consensus 358 f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~--g~~~elv~~~~~~~~g~~G~lv~~~d~~~l 432 (475)
T cd03813 358 FTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV--GSCRELIEGADDEALGPAGEVVPPADPEAL 432 (475)
T ss_pred EcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC--CChHHHhcCCcccccCCceEEECCCCHHHH
Confidence 987 345678999999999999999999999999999999999999 999999874110 00457999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHHHHHH
Q 011163 447 SQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYT 487 (492)
Q Consensus 447 ~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~ 487 (492)
+++|..+++|++.+++++++++. +.|+|+.++++ |.++|+
T Consensus 433 a~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~-y~~lY~ 475 (475)
T cd03813 433 ARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDS-YRRLYL 475 (475)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHhC
Confidence 99999999999999999999875 78999999999 599994
No 35
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-36 Score=301.72 Aligned_cols=351 Identities=17% Similarity=0.153 Sum_probs=250.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||+|+..|+|. .||+++++.+++++|.++||+|++++.......... ...
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------------------~~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE---------------------------ERN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh---------------------------hcc
Confidence 799999988885 699999999999999999999999997643221110 012
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
+.+++.++.. ... ....+. ......++....+|||||+|............. ..++|+
T Consensus 52 ~~~~~~~~~~-----~~~-~~~~~~----------~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~------~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPSL-----LNV-ASTPFS----------PSFFKQLKKLAKKADVIHLHFPNPLADLALLLL------PRKKPV 109 (357)
T ss_pred CceEEEeecc-----ccc-cccccc----------HHHHHHHHhcCCCCCEEEEecCcchHHHHHHHh------ccCceE
Confidence 3344444310 000 001000 011111112247899999997433212111111 147899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++++|+...... . . ... +..+++..++.+|.++++|+.+.+.+... ..
T Consensus 110 i~~~h~~~~~~~----~----------~-----~~~-----~~~~~~~~~~~~d~vi~~s~~~~~~~~~~-~~------- 157 (357)
T cd03795 110 VVHWHSDIVKQK----L----------L-----LKL-----YRPLQRRFLRRADAIVATSPNYAETSPVL-RR------- 157 (357)
T ss_pred EEEEcChhhccc----h----------h-----hhh-----hhHHHHHHHHhcCEEEeCcHHHHHHHHHh-cC-------
Confidence 999996322100 0 0 000 12456678899999999999887755431 11
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
.+.++.+||||+|.+.|.+... .+. .....+ .+.+.++++||+.+.||++.+++|+
T Consensus 158 --~~~~~~~i~~gi~~~~~~~~~~-----------------~~~---~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~ 213 (357)
T cd03795 158 --FRDKVRVIPLGLDPARYPRPDA-----------------LEE---AIWRRA--AGRPFFLFVGRLVYYKGLDVLLEAA 213 (357)
T ss_pred --CccceEEecCCCChhhcCCcch-----------------hhh---HhhcCC--CCCcEEEEecccccccCHHHHHHHH
Confidence 2368999999999887765410 010 112222 2347899999999999999999999
Q ss_pred HHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCC--CCCCchHHHHHhhc
Q 011163 330 RGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~--~E~~glv~lEAma~ 406 (492)
+++. +++|+|+|+|+ ..+.+++.++++.. ++|.++|.++.+++..+|+.||++++||. .|+||++++|||+|
T Consensus 214 ~~l~--~~~l~i~G~g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~ 288 (357)
T cd03795 214 AALP--DAPLVIVGEGP---LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAF 288 (357)
T ss_pred Hhcc--CcEEEEEeCCh---hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHc
Confidence 9987 79999999764 35566777755543 79999998898888999999999999996 59999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADC 478 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a 478 (492)
|+|+|+++. |+..+.+.. ++.+|+++++.|+++++++|..+++|++.+++|++++++ ++|||+.++
T Consensus 289 g~Pvi~~~~--~~~~~~i~~----~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 289 GKPVISTEI--GTGGSYVNL----HGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred CCCEEecCC--CCchhHHhh----CCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 999999999 999998763 256799999999999999999999999999999999876 789999874
No 36
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=5.9e-37 Score=306.26 Aligned_cols=353 Identities=15% Similarity=0.083 Sum_probs=248.6
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||+++++.++| +.++++.+++++|. ||++.+++.......+.... ..
T Consensus 1 ~~~~~~~~~~~-----~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~--------------------------~~ 47 (367)
T cd05844 1 RVLIFRPLLLA-----PSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGAL--------------------------AV 47 (367)
T ss_pred CEEEEeCCCCC-----CchHHHHHHHHhcc--cCCcEEEEeeccCCCCCccc--------------------------ce
Confidence 68898988766 38999999999994 88888888654322111000 01
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHH-HHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFER-FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
++..+.... .... . .... ...+.......++ ..+|||||+|....++....+++. .++|
T Consensus 48 ~~~~~~~~~-----~~~~---~----~~~~~~~~~~~~~~~~~~--~~~~dvvh~~~~~~~~~~~~~~~~------~~~p 107 (367)
T cd05844 48 RLADLAGGK-----AGLR---L----GALRLLTGSAPQLRRLLR--RHRPDLVHAHFGFDGVYALPLARR------LGVP 107 (367)
T ss_pred eeeecccch-----hHHH---H----HHHHhccccccHHHHHHH--hhCCCEEEeccCchHHHHHHHHHH------cCCC
Confidence 111110000 0000 0 0000 0111122222333 368999999975544443333332 6899
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+|+|+|+......... ... .... ......+..++.+|.++++|+..++.+... +
T Consensus 108 ~i~~~h~~~~~~~~~~------~~~-------~~~~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~------ 161 (367)
T cd05844 108 LVVTFHGFDATTSLAL------LLR-------SRWA-----LYARRRRRLARRAALFIAVSQFIRDRLLAL--G------ 161 (367)
T ss_pred EEEEEeCccccccchh------hcc-------cchh-----HHHHHHHHHHHhcCEEEECCHHHHHHHHHc--C------
Confidence 9999997532110000 000 0000 012345566789999999999887766542 2
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
.++.++.+++||+|.+.|.|... ....+.++++|++.+.||++.+++|
T Consensus 162 --~~~~~i~vi~~g~d~~~~~~~~~------------------------------~~~~~~i~~~G~~~~~K~~~~li~a 209 (367)
T cd05844 162 --FPPEKVHVHPIGVDTAKFTPATP------------------------------ARRPPRILFVGRFVEKKGPLLLLEA 209 (367)
T ss_pred --CCHHHeEEecCCCCHHhcCCCCC------------------------------CCCCcEEEEEEeeccccChHHHHHH
Confidence 13568999999999877665310 1123678999999999999999999
Q ss_pred HHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCC------CCCCchH
Q 011163 329 VRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSF------HDPLLQV 399 (492)
Q Consensus 329 ~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~------~E~~glv 399 (492)
++.+.+. +++|+|+|+|+ ..+++++++++++ .++|.|+|..+.+++..+|+.||++++||. .|+||++
T Consensus 210 ~~~l~~~~~~~~l~ivG~g~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~ 286 (367)
T cd05844 210 FARLARRVPEVRLVIIGDGP---LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVV 286 (367)
T ss_pred HHHHHHhCCCeEEEEEeCch---HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchH
Confidence 9998753 79999999663 4567888887754 278999998888889999999999999997 4999999
Q ss_pred HHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchh
Q 011163 400 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDA 476 (492)
Q Consensus 400 ~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~ 476 (492)
++|||+||+|+|+++. ||..|++. ++.+|+++++.|+++++++|.++++|++.+++++.+++. ++|||+.
T Consensus 287 ~~EA~a~G~PvI~s~~--~~~~e~i~-----~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 359 (367)
T cd05844 287 LLEAQASGVPVVATRH--GGIPEAVE-----DGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRR 359 (367)
T ss_pred HHHHHHcCCCEEEeCC--CCchhhee-----cCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 9999999999999999 99999986 356799999999999999999999999999999888865 6899999
Q ss_pred hHHHHHHH
Q 011163 477 DCNDIHIS 484 (492)
Q Consensus 477 ~a~~~~~~ 484 (492)
+++++ .+
T Consensus 360 ~~~~l-~~ 366 (367)
T cd05844 360 QTAKL-EA 366 (367)
T ss_pred HHHHH-hc
Confidence 99984 54
No 37
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-37 Score=306.95 Aligned_cols=346 Identities=10% Similarity=0.021 Sum_probs=237.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHC--CCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~--Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
|||+++++. .| ..||+++++.+++++|.++ ||+|.++++...... .+...+. .. .
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~~~~~------------------~~-~ 57 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWLKEIK------------------YA-Q 57 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHHHhcc------------------hh-c
Confidence 899999874 34 3599999999999999999 899999997644211 1000000 00 0
Q ss_pred EECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC
Q 011163 87 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 166 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
....+. +. ..... .....+.+.++ ..+|||||+|+..+.+.+.++++.. ...
T Consensus 58 ~~~~~~---~~------------~~~~~-------~~~~~l~~~l~--~~~~Dii~~~~~~~~~~~~~~~~~~----~~~ 109 (359)
T PRK09922 58 SFSNIK---LS------------FLRRA-------KHVYNFSKWLK--ETQPDIVICIDVISCLYANKARKKS----GKQ 109 (359)
T ss_pred ccccch---hh------------hhccc-------HHHHHHHHHHH--hcCCCEEEEcCHHHHHHHHHHHHHh----CCC
Confidence 000000 00 00000 00123334444 3789999999855444433333221 123
Q ss_pred CcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCcc
Q 011163 167 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 246 (492)
Q Consensus 167 ~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~ 246 (492)
.+++.+.|.... . ... .....+..+|.++++|+...+.+.. .+.
T Consensus 110 ~~~~~~~h~~~~-----~----------~~~----------------~~~~~~~~~d~~i~~S~~~~~~~~~--~~~--- 153 (359)
T PRK09922 110 FKIFSWPHFSLD-----H----------KKH----------------AECKKITCADYHLAISSGIKEQMMA--RGI--- 153 (359)
T ss_pred CeEEEEecCccc-----c----------cch----------------hhhhhhhcCCEEEEcCHHHHHHHHH--cCC---
Confidence 456666663210 0 000 0001136799999999998877654 221
Q ss_pred HHHhhhcCCeeeecCCCCCCCcC-CCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccc--cccCHH
Q 011163 247 STLAIHQDKLLVAPCGFDSSTWD-PSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV--SDVFLE 323 (492)
Q Consensus 247 ~~~~~~~~~~~vI~nGvd~~~f~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~--~~Kg~~ 323 (492)
.+.++.+||||+|.+.+. |.. .....+.++++||+. ++||++
T Consensus 154 -----~~~ki~vi~N~id~~~~~~~~~------------------------------~~~~~~~i~~~Grl~~~~~k~~~ 198 (359)
T PRK09922 154 -----SAQRISVIYNPVEIKTIIIPPP------------------------------ERDKPAVFLYVGRLKFEGQKNVK 198 (359)
T ss_pred -----CHHHEEEEcCCCCHHHccCCCc------------------------------ccCCCcEEEEEEEEecccCcCHH
Confidence 346899999999965432 210 011246789999986 569999
Q ss_pred HHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccC--HHHHHHHHhcCCEEEECCCCCCCchHH
Q 011163 324 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYD--DALLHLIFSGSDIILCHSFHDPLLQVP 400 (492)
Q Consensus 324 ~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~~~~~~~adi~v~pS~~E~~glv~ 400 (492)
.+++|+.++.. +++|+|+|+|++ .+.+++++++++. ++|.|+|..+ .+.+..+|+.||++++||.+|+||+++
T Consensus 199 ~l~~a~~~~~~-~~~l~ivG~g~~---~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~ 274 (359)
T PRK09922 199 ELFDGLSQTTG-EWQLHIIGDGSD---FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTL 274 (359)
T ss_pred HHHHHHHhhCC-CeEEEEEeCCcc---HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHH
Confidence 99999998854 799999998753 5677888887653 7999997654 377788999999999999999999999
Q ss_pred HHHhhcCCceEEEe-cCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHH--HHHHHHHHhccCCchhh
Q 011163 401 LKALKYGAAPIAVT-SSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSW--KRKIKDAMLQDFSWDAD 477 (492)
Q Consensus 401 lEAma~G~PvV~~~-~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~--~~~~~~a~~~~fsw~~~ 477 (492)
+||||||+|||+++ . ||..|+|. +|.+|++++++|+++++++|..+++|++.+ ..+.++ .++|+-+..
T Consensus 275 lEAma~G~Pvv~s~~~--~g~~eiv~-----~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 345 (359)
T PRK09922 275 LEAMSYGIPCISSDCM--SGPRDIIK-----PGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNS--IERFYEVLY 345 (359)
T ss_pred HHHHHcCCCEEEeCCC--CChHHHcc-----CCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHH--HHHhhHHHH
Confidence 99999999999999 7 99999987 467899999999999999999999999743 333332 267888999
Q ss_pred HHHHHHHHHHHHh
Q 011163 478 CNDIHISAYTAIK 490 (492)
Q Consensus 478 a~~~~~~~Y~~l~ 490 (492)
.+++ .++|+.+.
T Consensus 346 ~~~~-~~~~~~~~ 357 (359)
T PRK09922 346 FKNL-NNALFSKL 357 (359)
T ss_pred HHHH-HHHHHHHh
Confidence 9995 88998763
No 38
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.4e-36 Score=302.95 Aligned_cols=348 Identities=17% Similarity=0.210 Sum_probs=243.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++++.. + ..||.++++..++++|.++||+|++++.....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999863 2 35999999999999999999999999964210
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
+ . . .+. ..+|||||+|.+..+.......... ..++|
T Consensus 43 -------~--------------~-------------~----~~~--~~~~diih~~~~~~~~~~~~~~~~~----~~~~~ 78 (365)
T cd03825 43 -------L--------------I-------------S----KIE--IINADIVHLHWIHGGFLSIEDLSKL----LDRKP 78 (365)
T ss_pred -------h--------------h-------------h----Chh--cccCCEEEEEccccCccCHHHHHHH----HcCCC
Confidence 0 0 0 011 2689999999855544433332321 13889
Q ss_pred EEEEecCCCCCC---CCCch--hh-hhcCCCccccCCCCccc-CCCCCccchhhHHHH-hhcCceeccCccchhhhhhcc
Q 011163 169 ILLSCHNLNSLC---LEHPD--KL-ALCGLDPARLHRPDRLQ-DNTKTHLVNILKGGV-VYSNKVVIVSSMHSKGRIIRS 240 (492)
Q Consensus 169 ~v~t~H~~~~~~---~~~~~--~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~~ 240 (492)
+|+|+|+..... .++.. .+ ..++... ... .... ... .......+..+ ..++.++++|+...+.+....
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~ 154 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCP-QLG--SYPEKDLS-RWIWRRKRKAWADLNLTIVAPSRWLADCARSSS 154 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCCC-CCC--CCCcccHH-HHHHHHHHHHhccCCcEEEehhHHHHHHHHhcc
Confidence 999999854311 01000 00 0000000 000 0000 000 00011111122 456788888887766554321
Q ss_pred cCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccc--c
Q 011163 241 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV--S 318 (492)
Q Consensus 241 ~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~--~ 318 (492)
. ....++.++|||+|.+.|.|. .+...+..++++.+. .++++.|+.. +
T Consensus 155 -~--------~~~~~~~vi~ngi~~~~~~~~-------------------~~~~~~~~~~~~~~~--~~i~~~~~~~~~~ 204 (365)
T cd03825 155 -L--------FKGIPIEVIPNGIDTTIFRPR-------------------DKREARKRLGLPADK--KIILFGAVGGTDP 204 (365)
T ss_pred -c--------cCCCceEEeCCCCcccccCCC-------------------cHHHHHHHhCCCCCC--eEEEEEecCCCcc
Confidence 1 135789999999998877664 334566777877543 4455555544 4
Q ss_pred ccCHHHHHHHHHHHhH---cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccC-HHHHHHHHhcCCEEEECCCCC
Q 011163 319 DVFLENLKAVVRGAKM---RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD-DALLHLIFSGSDIILCHSFHD 394 (492)
Q Consensus 319 ~Kg~~~li~a~~~l~~---~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~adi~v~pS~~E 394 (492)
.||++.+++|++.+.+ .+++++++|.++. . .. ... ..++.++|.++ ++++..+|+.||++++||..|
T Consensus 205 ~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-~--~~-----~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e 275 (365)
T cd03825 205 RKGFDELIEALKRLAERWKDDIELVVFGASDP-E--IP-----PDL-PFPVHYLGSLNDDESLALIYSAADVFVVPSLQE 275 (365)
T ss_pred ccCHHHHHHHHHHhhhccCCCeEEEEeCCCch-h--hh-----ccC-CCceEecCCcCCHHHHHHHHHhCCEEEeccccc
Confidence 9999999999999886 5789999996632 1 11 122 36889898887 778889999999999999999
Q ss_pred CCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---cc
Q 011163 395 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QD 471 (492)
Q Consensus 395 ~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~ 471 (492)
+||++++|||+||+|+|+++. ||+.|++.+ +.+|+++++.|+++++++|..+++|++.+.+++++++. ++
T Consensus 276 ~~g~~~~Eam~~g~PvI~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 348 (365)
T cd03825 276 NFPNTAIEALACGTPVVAFDV--GGIPDIVDH-----GVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENE 348 (365)
T ss_pred cccHHHHHHHhcCCCEEEecC--CCChhheeC-----CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 999999873 45789999999999999999999999988999988865 68
Q ss_pred CCchhhHHHHHHHHHHHH
Q 011163 472 FSWDADCNDIHISAYTAI 489 (492)
Q Consensus 472 fsw~~~a~~~~~~~Y~~l 489 (492)
|||+.++++ |.++|+++
T Consensus 349 ~s~~~~~~~-~~~~y~~~ 365 (365)
T cd03825 349 FDSRVQAKR-YLSLYEEL 365 (365)
T ss_pred cCHHHHHHH-HHHHHhhC
Confidence 999999999 59999864
No 39
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=5.7e-36 Score=297.99 Aligned_cols=354 Identities=16% Similarity=0.164 Sum_probs=248.8
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||++++.+ ..||.+.++.+|+++|.++||+|++++.......... . .
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~------------------------~ 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP----I------------------------D 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch----h------------------------h
Confidence 588888753 4699999999999999999999999986533211100 0 0
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
......+.. .. ... .+......+.++++ ..+|||||+|..++.++..+++.. ..++|+
T Consensus 49 ~~~~~~~~~-------~~-~~~-------~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLNM-------SK-NPL-------SFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEecc-------cc-cch-------hhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 000111110 00 001 01111123333444 368999999987666554444332 257899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++|.|+....+. .. ....+.....++.++++|+...+.+.... .
T Consensus 107 v~~~h~~~~~~~---------------------~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~------- 150 (360)
T cd04951 107 ICTAHSKNEGGR---------------------LR-------MLAYRLTDFLSDLTTNVSKEALDYFIASK-A------- 150 (360)
T ss_pred EEEeeccCchhH---------------------HH-------HHHHHHHhhccCceEEEcHHHHHHHHhcc-C-------
Confidence 999997532110 00 01122334457788888887766655421 1
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
.+..++.+||||+|...|.+.. ..+..++++++++. +.++++++||+.+.||++.+++|+
T Consensus 151 -~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~l~~g~~~~~kg~~~li~a~ 210 (360)
T cd04951 151 -FNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVKN--DTFVILAVGRLVEAKDYPNLLKAF 210 (360)
T ss_pred -CCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcCC--CCEEEEEEeeCchhcCcHHHHHHH
Confidence 1357899999999987765531 13455777888764 347899999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
.++.+. +++|+|+|+|+. .+.+++.++.++. ++|.++|.. +++..+|+.||++++||.+|+||++++|||++
T Consensus 211 ~~l~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~ 285 (360)
T cd04951 211 AKLLSDYLDIKLLIAGDGPL---RATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMAC 285 (360)
T ss_pred HHHHhhCCCeEEEEEcCCCc---HHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHc
Confidence 998753 799999997743 4566677666543 689988754 34678999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc-CHHHHHHHHHH--HHhccCCchhhHHHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKD--AMLQDFSWDADCNDIHI 483 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~-~~~~~~~~~~~--a~~~~fsw~~~a~~~~~ 483 (492)
|+|+|+++. |+..|++++ +|+++++.|+++++++|..+++ +++.++.++.+ ...++|||+.++++ |.
T Consensus 286 G~PvI~~~~--~~~~e~i~~-------~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~ 355 (360)
T cd04951 286 ELPVVATDA--GGVREVVGD-------SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQ-WL 355 (360)
T ss_pred CCCEEEecC--CChhhEecC-------CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 999999999 999999862 5789999999999999999984 55555555544 12388999999999 58
Q ss_pred HHHHH
Q 011163 484 SAYTA 488 (492)
Q Consensus 484 ~~Y~~ 488 (492)
++|++
T Consensus 356 ~~y~~ 360 (360)
T cd04951 356 TLYTG 360 (360)
T ss_pred HHhhC
Confidence 99963
No 40
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7.6e-36 Score=297.94 Aligned_cols=292 Identities=13% Similarity=0.083 Sum_probs=204.7
Q ss_pred HHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEE-EecCCCCCCCCCchhhhhcCCCccccCCCCcc
Q 011163 125 RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILL-SCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 203 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
.++..++++ .+|||||+|+..+.+.+.+.+. +.++|+++ +.|+. +.. ...... . .
T Consensus 270 ~~l~~~ir~--~rpDIVHt~~~~a~l~g~laA~------lagvpviv~~~h~~-~~~-~~~r~~-----~---------~ 325 (578)
T PRK15490 270 KHLVPHLCE--RKLDYLSVWQDGACLMIALAAL------IAGVPRIQLGLRGL-PPV-VRKRLF-----K---------P 325 (578)
T ss_pred HHHHHHHHH--cCCCEEEEcCcccHHHHHHHHH------hcCCCEEEEeeccc-CCc-chhhHH-----H---------H
Confidence 445555554 7999999998665555444433 25788854 46651 110 000000 0 0
Q ss_pred cCCCCCccchhhH---HHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCccccccc
Q 011163 204 QDNTKTHLVNILK---GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENY 280 (492)
Q Consensus 204 ~~~~~~~~~~~~~---~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~ 280 (492)
++ .... ..+..+| ++++|...++.+... ++ .+++++.+||||||.+.|.|..+
T Consensus 326 e~-------~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~-lg--------ip~~KI~VIyNGVD~~rf~p~~~------- 381 (578)
T PRK15490 326 EY-------EPLYQALAVVPGVD-FMSNNHCVTRHYADW-LK--------LEAKHFQVVYNGVLPPSTEPSSE------- 381 (578)
T ss_pred HH-------HHhhhhceeEecch-hhhccHHHHHHHHHH-hC--------CCHHHEEEEeCCcchhhcCccch-------
Confidence 00 0000 0122334 566777666655431 12 25789999999999988877521
Q ss_pred CccCccChHHHHHHHHH--HhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHH
Q 011163 281 CAEDMKGKTVCKVTLQQ--QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVS 356 (492)
Q Consensus 281 ~~~~~~~~~~~~~~~~~--~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~ 356 (492)
.....++ ..+++. ..++++++||+.++||+..+++++.++.+ .+++|+|+|+|+ ..+.+++
T Consensus 382 ----------~~~~~r~~~~~~l~~--~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~---~~eeLk~ 446 (578)
T PRK15490 382 ----------VPHKIWQQFTQKTQD--ADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD---LRAEAQK 446 (578)
T ss_pred ----------hhHHHHHHhhhccCC--CCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch---hHHHHHH
Confidence 0111222 233432 23688999999999999999999988765 379999999774 4667888
Q ss_pred HHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceee
Q 011163 357 FQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSR 435 (492)
Q Consensus 357 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G 435 (492)
++++++. ++|+|+|.. +++..+|+.+|+||+||.+|+||++++|||+||+|||+|+. ||.+|+|. +|.+|
T Consensus 447 la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv--GG~~EiV~-----dG~nG 517 (578)
T PRK15490 447 RAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA--GGSAECFI-----EGVSG 517 (578)
T ss_pred HHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC--CCcHHHcc-----cCCcE
Confidence 8888764 889988753 45678999999999999999999999999999999999999 99999987 46789
Q ss_pred eeecCCCHHHHHHHHH---HHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHHHHHHHH
Q 011163 436 FISSTFGNISLSQALE---EIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 436 ~~~~~~~~~~l~~ai~---~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~~l 489 (492)
+++++.|+.++++++. .+.++.+....++++++. ++|||+.|+++ |.++|.+-
T Consensus 518 ~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~-y~ki~~~~ 576 (578)
T PRK15490 518 FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGT-FVKTIASQ 576 (578)
T ss_pred EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHhc
Confidence 9999999988888773 344444445567777765 78999999999 59999753
No 41
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.3e-35 Score=300.14 Aligned_cols=371 Identities=12% Similarity=0.021 Sum_probs=244.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
-|+++++.. .+|.+..+.+++++|+++||+|+|++...+...... . ..
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~---~-----------------------~~ 51 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI---L-----------------------SN 51 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH---h-----------------------cC
Confidence 466666652 367888889999999999999999997643221110 0 12
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHH----HHHHHHHHHHHHHcCCCCCEEEEcCchh--hhHHHHHHHHHhhc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERF----TYFSRASLDYIVKSRKQPDVLHIHNWET--AIVGPLFWDIFVKQ 162 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~pDiVh~h~~~~--~~~~~~~~~~~~~~ 162 (492)
+|+.++.+... + ...........+ ......+...+.+ ..+||+||+|+... ....+.+..+
T Consensus 52 ~~v~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~---- 118 (415)
T cd03816 52 PNITIHPLPPP-------P-QRLNKLPFLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL---- 118 (415)
T ss_pred CCEEEEECCCC-------c-cccccchHHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH----
Confidence 57777766421 0 000000000111 1111222222222 35799999997322 1221222222
Q ss_pred CCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccC
Q 011163 163 GLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLS 242 (492)
Q Consensus 163 ~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~ 242 (492)
..++|+|+|+|+..+. . . ..+.... ..+.. ....+++...+.+|.||++|+.+++.+.. .+
T Consensus 119 -~~~~~~V~~~h~~~~~-~-----~-~~~~~~~-----~~~~~----~~~~~e~~~~~~ad~ii~vS~~~~~~l~~--~~ 179 (415)
T cd03816 119 -LRRTKLIIDWHNYGYT-I-----L-ALKLGEN-----HPLVR----LAKWYEKLFGRLADYNLCVTKAMKEDLQQ--FN 179 (415)
T ss_pred -HhCCeEEEEcCCchHH-H-----H-hcccCCC-----CHHHH----HHHHHHHHHhhcCCEeeecCHHHHHHHHh--hh
Confidence 2578999999975321 0 0 0000000 00000 01234556678899999999998887754 22
Q ss_pred CCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHH-------------HhCCCCCCCceE
Q 011163 243 HGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ-------------QLGLSKDASTIV 309 (492)
Q Consensus 243 ~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~lg~~~~~~~~~ 309 (492)
.+++++.+||||. .+.|.|... ...+...++ ..++.. ++..+
T Consensus 180 --------~~~~ki~vI~Ng~-~~~f~p~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 234 (415)
T cd03816 180 --------NWKIRATVLYDRP-PEQFRPLPL---------------EEKHELFLKLAKTFLTRELRIGAVQLSE-ERPAL 234 (415)
T ss_pred --------ccCCCeeecCCCC-HHHceeCcH---------------HHHHHHHHhccccccccccccccceecC-CCceE
Confidence 1468999999995 456766421 011111111 112222 23467
Q ss_pred EEEEeccccccCHHHHHHHHHHHhH--------cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEec-cCHHHHHHH
Q 011163 310 VGCIFSDVSDVFLENLKAVVRGAKM--------RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS-YDDALLHLI 380 (492)
Q Consensus 310 i~~~grl~~~Kg~~~li~a~~~l~~--------~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~ 380 (492)
++++||+.+.||++.|++|++.+.+ .+++|+|+|+|+ ..+.+++++++++.+++.++++ .+.++++.+
T Consensus 235 i~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~---~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~ 311 (415)
T cd03816 235 LVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP---LKEKYLERIKELKLKKVTIRTPWLSAEDYPKL 311 (415)
T ss_pred EEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc---cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHH
Confidence 8889999999999999999999864 259999999874 3677888888775567776654 578889999
Q ss_pred HhcCCEEEECC---CCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcC-
Q 011163 381 FSGSDIILCHS---FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN- 456 (492)
Q Consensus 381 ~~~adi~v~pS---~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~- 456 (492)
|++||++++|+ ..|++|++++||||||+|+|+++. ||..|+|+ ++.+|++++ |+++|+++|..+++|
T Consensus 312 l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~--~~~~eiv~-----~~~~G~lv~--d~~~la~~i~~ll~~~ 382 (415)
T cd03816 312 LASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF--KCIDELVK-----HGENGLVFG--DSEELAEQLIDLLSNF 382 (415)
T ss_pred HHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC--CCHHHHhc-----CCCCEEEEC--CHHHHHHHHHHHHhcC
Confidence 99999999753 358899999999999999999999 99999997 466899994 899999999999999
Q ss_pred --HHHHHHHHHHHHh-ccCCchhhHHH
Q 011163 457 --PLSWKRKIKDAML-QDFSWDADCND 480 (492)
Q Consensus 457 --~~~~~~~~~~a~~-~~fsw~~~a~~ 480 (492)
++.+++|++++++ ..++|+..-.+
T Consensus 383 ~~~~~~~~m~~~~~~~~~~~~~~~~~~ 409 (415)
T cd03816 383 PNRGKLNSLKKGAQEESELRWDENWDR 409 (415)
T ss_pred CCHHHHHHHHHHHHHhhhcCHHHHHHH
Confidence 8999999999987 67888876544
No 42
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.6e-35 Score=294.16 Aligned_cols=342 Identities=16% Similarity=0.127 Sum_probs=248.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||++++.|+| |.++++.+++++|.++||+|+|+++......... .... ..
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~-----------------------~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVH-PEDR-----------------------AE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccc-cccc-----------------------cc
Confidence 79999987543 4889999999999999999999998654321100 0000 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
+..+ . + .........+...+...++ ..+||+||+|..........+... ..++|+
T Consensus 52 ~~~~---------------~-~--~~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LART---------------R-Y--LARSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccch---------------H-H--HHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 0000 0 0 0001111112222333332 368999999985443333333332 247899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++++|+...... . ....++..++.+|.++++|+..++.+.... +
T Consensus 107 ~~~~~~~~~~~~-----------~-----------------~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~-~------- 150 (355)
T cd03799 107 SFTAHGKDIFRS-----------P-----------------DAIDLDEKLARADFVVAISEYNRQQLIRLL-G------- 150 (355)
T ss_pred EEEEeccccccc-----------C-----------------chHHHHHHHhhCCEEEECCHHHHHHHHHhc-C-------
Confidence 999996432100 0 002456678899999999999888776531 2
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.+||||+|.+.|.+.. .. .....+.++++|++.+.||++.+++++
T Consensus 151 -~~~~~~~vi~~~~d~~~~~~~~--------------------------~~--~~~~~~~i~~~g~~~~~k~~~~l~~~~ 201 (355)
T cd03799 151 -CDPDKIHVVHCGVDLERFPPRP--------------------------PP--PPGEPLRILSVGRLVEKKGLDYLLEAL 201 (355)
T ss_pred -CCcccEEEEeCCcCHHHcCCcc--------------------------cc--ccCCCeEEEEEeeeccccCHHHHHHHH
Confidence 1457899999999987665531 00 012346789999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCC------CCCchHH
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFH------DPLLQVP 400 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~------E~~glv~ 400 (492)
+++.+. +++|+++|.++ ..+.+++.+++++. ++|.+.|..+.+++..+|+.||++++||.+ |+||+++
T Consensus 202 ~~l~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~ 278 (355)
T cd03799 202 ALLKDRGIDFRLDIVGDGP---LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVL 278 (355)
T ss_pred HHHhhcCCCeEEEEEECCc---cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHH
Confidence 998864 79999999764 24566666666543 789999888888899999999999999998 9999999
Q ss_pred HHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhh
Q 011163 401 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDAD 477 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~ 477 (492)
+|||+||+|+|+++. |+..|++. ++.+|+++++.|+++++++|..+++|++.+.+++++++. ++|||+.+
T Consensus 279 ~Ea~a~G~Pvi~~~~--~~~~~~i~-----~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~ 351 (355)
T cd03799 279 MEAMAMGLPVISTDV--SGIPELVE-----DGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQ 351 (355)
T ss_pred HHHHHcCCCEEecCC--CCcchhhh-----CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999 99999987 345799999999999999999999999999999998875 78999999
Q ss_pred HHH
Q 011163 478 CND 480 (492)
Q Consensus 478 a~~ 480 (492)
+++
T Consensus 352 ~~~ 354 (355)
T cd03799 352 AAR 354 (355)
T ss_pred hhc
Confidence 876
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-35 Score=294.61 Aligned_cols=360 Identities=18% Similarity=0.149 Sum_probs=252.8
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|+..++|. .||.+.++..|+++|.++||+|.++++......... . +
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~---------------------------~ 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP-A---------------------------R 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC-C---------------------------C
Confidence 799999988884 499999999999999999999999997643211110 0 0
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchh-hhHHHHHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWET-AIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (492)
...+..... + ...... ... . ....+...++ ..+||+||+|.... ++....+++ ..++|
T Consensus 51 ~~~~~~~~~---~-~~~~~~-~~~-~-------~~~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~------~~~~~ 109 (364)
T cd03814 51 VVPVPSVPL---P-GYPEIR-LAL-P-------PRRRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR------RLGIP 109 (364)
T ss_pred ceeeccccc---C-cccceE-ecc-c-------chhhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH------HcCCC
Confidence 111111100 0 000000 000 0 0012222232 36899999986432 222222222 26899
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+++++|+.... ........ . ... ......+...+.+|.++++|+...+.+.. .
T Consensus 110 ~i~~~~~~~~~------~~~~~~~~--~------~~~----~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~------- 162 (364)
T cd03814 110 VVTSYHTDFPE------YLRYYGLG--P------LSW----LAWAYLRWFHNRADRVLVPSPSLADELRA--R------- 162 (364)
T ss_pred EEEEEecChHH------Hhhhcccc--h------HhH----hhHHHHHHHHHhCCEEEeCCHHHHHHHhc--c-------
Confidence 99999974210 00000000 0 000 01245567778999999999988764332 1
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
...++.+++||+|.+.|.|... ....+++++ + .+.+.++++|++.+.||++.++++
T Consensus 163 ---~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~--~~~~~i~~~G~~~~~k~~~~~i~~ 218 (364)
T cd03814 163 ---GFRRVRLWPRGVDTELFHPRRR------------------DEALRARLG-P--PDRPVLLYVGRLAPEKNLEALLDA 218 (364)
T ss_pred ---CCCceeecCCCccccccCcccc------------------cHHHHHHhC-C--CCCeEEEEEeccccccCHHHHHHH
Confidence 2357899999999887776521 112234444 2 234789999999999999999999
Q ss_pred HHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcC
Q 011163 329 VRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 407 (492)
Q Consensus 329 ~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G 407 (492)
++++.+. +++|+++|.|++ .+.++ .. .++|.+.|..+.+++..+|+.||++++||..|+||++++|||+||
T Consensus 219 ~~~l~~~~~~~l~i~G~~~~---~~~~~----~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g 290 (364)
T cd03814 219 DLPLRRRPPVRLVIVGDGPA---RARLE----AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASG 290 (364)
T ss_pred HHHhhhcCCceEEEEeCCch---HHHHh----cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcC
Confidence 9999763 799999997642 23333 22 378999988888889999999999999999999999999999999
Q ss_pred CceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHHHH
Q 011163 408 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISA 485 (492)
Q Consensus 408 ~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~ 485 (492)
+|+|+++. |+..|+++ ++.+|+++++.|.++++++|..+++|++.++++++++.. ++|+|+.+++++ +++
T Consensus 291 ~PvI~~~~--~~~~~~i~-----~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 362 (364)
T cd03814 291 LPVVAPDA--GGPADIVT-----DGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNL-LEA 362 (364)
T ss_pred CCEEEcCC--CCchhhhc-----CCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHh
Confidence 99999999 99999986 356799999999999999999999999999999998876 589999999995 888
Q ss_pred HH
Q 011163 486 YT 487 (492)
Q Consensus 486 Y~ 487 (492)
|+
T Consensus 363 ~~ 364 (364)
T cd03814 363 YR 364 (364)
T ss_pred hC
Confidence 74
No 44
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=7.1e-35 Score=304.91 Aligned_cols=461 Identities=16% Similarity=0.158 Sum_probs=331.0
Q ss_pred eEEEEeecc-----ccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcc---------------ccc---cccee
Q 011163 10 HIIHICTEM-----DPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLD---------------GVQ---GLREI 66 (492)
Q Consensus 10 kIl~v~~~~-----~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~---------------~~~---~~~~~ 66 (492)
.++++|.|| .|. .+||+|+...+..++++++|..+.-++..|....-. ... .+..+
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 455999887 354 579999999999999999999999999876642110 000 01111
Q ss_pred ------eeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCC-CCCccCC---CCCCCCChhHH---HHHHHHHHHHHHHH
Q 011163 67 ------KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY-SSFFNRE---SVYGYSDDFER---FTYFSRASLDYIVK 133 (492)
Q Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~-~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~ 133 (492)
...+.+.+.+....+++|...+.++++|+++.... ..++.+. .+|+ .++..| +.+|+.+.++.++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg-~D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYG-GDQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 12455777888888999999999999999984211 0123333 3565 356777 48999999999987
Q ss_pred cCCCCCEEEEcCchhhhHHHHHHHHHhhc-C--------CCCCcEEEEecCCCCCC--CCCchhhhh--------cCCCc
Q 011163 134 SRKQPDVLHIHNWETAIVGPLFWDIFVKQ-G--------LEGTRILLSCHNLNSLC--LEHPDKLAL--------CGLDP 194 (492)
Q Consensus 134 ~~~~pDiVh~h~~~~~~~~~~~~~~~~~~-~--------~~~~~~v~t~H~~~~~~--~~~~~~~~~--------~~~~~ 194 (492)
++.+|||||+|+||+++++.-+.+.+... + .....+|+|+|++.++| .++.+.+.. ++++.
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 77899999999999999987222211100 0 12468999999999999 888766522 45554
Q ss_pred cccCCCCcccCCC-CCccchhhHHHHhhcCceeccCccc---hhhhhhc-ccCCCccHHHhhhcCCeeeecCCCCCCCcC
Q 011163 195 ARLHRPDRLQDNT-KTHLVNILKGGVVYSNKVVIVSSMH---SKGRIIR-SLSHGLESTLAIHQDKLLVAPCGFDSSTWD 269 (492)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vi~vS~~~---~~~~~~~-~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~ 269 (492)
..+.... .+.+. ....+++++.++..|+.+.+||+.+ ++++... ..+.+ ....++..|.|||+...|.
T Consensus 325 ~~~~~lg-~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p------~~~~~i~~ITNGVh~~~W~ 397 (778)
T cd04299 325 DRFLALG-RENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFP------VEEVPIGHVTNGVHVPTWV 397 (778)
T ss_pred HHHhhhc-cccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCC------cccCceeceeCCcchhhhc
Confidence 4332221 11210 1124799999999999999999987 3333221 11111 1245789999999999998
Q ss_pred -CCCCcccccc---------------------cCccCccChHHHHHHHHHHh---------------------CCCCCCC
Q 011163 270 -PSNDKFLTEN---------------------YCAEDMKGKTVCKVTLQQQL---------------------GLSKDAS 306 (492)
Q Consensus 270 -p~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l---------------------g~~~~~~ 306 (492)
|..+..+... .+.+.++.+..+|.++.+.. +.+.+++
T Consensus 398 ~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd 477 (778)
T cd04299 398 APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPN 477 (778)
T ss_pred CHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCC
Confidence 7655544221 11111445556666554442 4445667
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhH------cCcEEEEEecCCCh------hHHHHHHHHHH--HhCCCeEEEEecc
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKLP------SASRALVSFQE--ELKDGIVIFVDSY 372 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~------~~~~lvivG~g~~~------~~~~~l~~~~~--~~~~~~v~~~~~~ 372 (492)
.++++|+.|+..+||.+++++.+.++.+ .+++||++|.+ +| .+.+.+.++++ .. .++|.|+..|
T Consensus 478 ~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKA-hP~d~~gK~iIk~i~~~a~~p~~-~~kVvfle~Y 555 (778)
T cd04299 478 VLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKA-HPADEPGKELIQEIVEFSRRPEF-RGRIVFLEDY 555 (778)
T ss_pred ccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEec-CccchHHHHHHHHHHHHHhCcCC-CCcEEEEcCC
Confidence 8899999999999999999999888854 47999999965 32 34446666666 33 2799999999
Q ss_pred CHHHHHHHHhcCCEEEECCC--CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC----------
Q 011163 373 DDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST---------- 440 (492)
Q Consensus 373 ~~~~~~~~~~~adi~v~pS~--~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~---------- 440 (492)
+....+.++++||+++.||+ +|++|++.|-||..|.+-+++-. |...|.- +|.|||.+.+
T Consensus 556 d~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlD--Gww~E~~------~g~nGwaig~~~~~~~~~~~ 627 (778)
T cd04299 556 DMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLD--GWWDEGY------DGENGWAIGDGDEYEDDEYQ 627 (778)
T ss_pred CHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeeccc--Ccccccc------CCCCceEeCCCccccChhhc
Confidence 99999999999999999999 99999999999999999999888 8888865 3678999987
Q ss_pred --CCHHHHHHHHHH-----Hhc-----CHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHHH
Q 011163 441 --FGNISLSQALEE-----IKN-----NPLSWKRKIKDAMLQ---DFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 441 --~~~~~l~~ai~~-----~~~-----~~~~~~~~~~~a~~~---~fsw~~~a~~~~~~~Y~~l 489 (492)
.|+++|-+.|++ +.+ .|..|.+|.++++.. .|||++|+++|+.++|..+
T Consensus 628 d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 628 DAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 455667676654 223 277899999999985 9999999999888888654
No 45
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1.8e-35 Score=294.39 Aligned_cols=349 Identities=15% Similarity=0.135 Sum_probs=241.5
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||+++++.+ ..||.++++.+++++|.+.||+|+++++........ ... ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~--~~~-----------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD--DEI-----------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH--HHH-----------------------HHc
Confidence 799999865 359999999999999999999999999864431100 000 013
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc-
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR- 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~- 168 (492)
|+.++.+.. .. . ... .+...+...++ ..+|||||+|......++.++.+. .+.|
T Consensus 52 ~~~~~~~~~-------~~---~----~~~---~~~~~~~~~~~--~~~~Dvv~~~~~~~~~~~~~~~~~------~~~~~ 106 (358)
T cd03812 52 GGKIYYIPA-------RK---K----NPL---KYFKKLYKLIK--KNKYDIVHVHGSSASGFILLAAKK------AGVKV 106 (358)
T ss_pred CCeEEEecC-------CC---c----cHH---HHHHHHHHHHh--cCCCCEEEEeCcchhHHHHHHHhh------CCCCe
Confidence 455554421 00 0 011 11123333333 378999999986544443433332 3444
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
++++.|+..+...... .... ...+.+...+.+|.++++|+..++.+... .
T Consensus 107 ~v~~~~~~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~------- 156 (358)
T cd03812 107 RIAHSHNTSDSHDKKK-----------------KILK-----YKVLRKLINRLATDYLACSEEAGKWLFGK-V------- 156 (358)
T ss_pred EEEEeccccccccccc-----------------hhhH-----HHHHHHHHHhcCCEEEEcCHHHHHHHHhC-C-------
Confidence 4677786432111000 0000 01234556788999999999887765432 1
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
...++.+||||+|.+.|.+... .+.. +...+... +.+.++++||+.++||++.+++|
T Consensus 157 ---~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~~--~~~~i~~vGr~~~~Kg~~~li~a 213 (358)
T cd03812 157 ---KNKKFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGILE--DKFVIGHVGRFSEQKNHEFLIEI 213 (358)
T ss_pred ---CcccEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCCC--CCEEEEEEeccccccChHHHHHH
Confidence 3578999999999887755421 1111 34455443 45789999999999999999999
Q ss_pred HHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 329 VRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 329 ~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
+..+.+. +++|+|+|+|+ ..+.+++.+++++. ++|.++|. .+++..+|+.||++|+||.+|+||++++||||
T Consensus 214 ~~~l~~~~~~~~l~ivG~g~---~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma 288 (358)
T cd03812 214 FAELLKKNPNAKLLLVGDGE---LEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQA 288 (358)
T ss_pred HHHHHHhCCCeEEEEEeCCc---hHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHH
Confidence 9999753 79999999774 34566777766543 78998876 34467899999999999999999999999999
Q ss_pred cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADC 478 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a 478 (492)
+|+|||+|+. ||..|++.+ ..|++..+.++++++++|.++++||+..+++...+..+..+|+...
T Consensus 289 ~G~PvI~s~~--~~~~~~i~~------~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (358)
T cd03812 289 SGLPCILSDT--ITKEVDLTD------LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGLDADDEAN 353 (358)
T ss_pred hCCCEEEEcC--Cchhhhhcc------CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccchhhhhhh
Confidence 9999999999 999999863 2357777778899999999999999999888877766544554433
No 46
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.6e-35 Score=293.35 Aligned_cols=365 Identities=16% Similarity=0.173 Sum_probs=247.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|++.+.| ..||.+.++.+|+++|.++||+|+++++......... .. .
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~--------------------------~ 51 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV-AL--------------------------N 51 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh-hc--------------------------c
Confidence 79999998776 4699999999999999999999999997644322110 00 0
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcC-chhh-hHHHHHHHHHhhcCCCCC
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHN-WETA-IVGPLFWDIFVKQGLEGT 167 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~-~~~~-~~~~~~~~~~~~~~~~~~ 167 (492)
+........ .... ... ... ..+.............+||+||+|+ +... .......+ ..++
T Consensus 52 ~~~~~~~~~-----~~~~--~~~----~~~-~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~------~~~~ 113 (375)
T cd03821 52 GVPVKLFSI-----NVAY--GLN----LAR-YLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAAR------KYGI 113 (375)
T ss_pred Cceeeeccc-----chhh--hhh----hhh-hccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHH------HhCC
Confidence 000000000 0000 000 000 0000111111222246899999997 3222 22122212 2588
Q ss_pred cEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 168 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 168 ~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
|++++.|+...........+ ..... .....+.....++.++++|.......... .
T Consensus 114 ~~i~~~~~~~~~~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--~----- 168 (375)
T cd03821 114 PYVVSPHGMLDPWALPHKAL-------------KKRLA-----WFLFERRLLQAAAAVHATSEQEAAEIRRL--G----- 168 (375)
T ss_pred CEEEEccccccccccccchh-------------hhHHH-----HHHHHHHHHhcCCEEEECCHHHHHHHHhh--C-----
Confidence 99999997532111000000 00000 01234556677888988886655443321 1
Q ss_pred HHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 327 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~ 327 (492)
...++.+||||+|.+.|.+.. .... ++.++.+. +.+.++++||+.+.||++.+++
T Consensus 169 ----~~~~~~vi~~~~~~~~~~~~~------------------~~~~-~~~~~~~~--~~~~i~~~G~~~~~K~~~~li~ 223 (375)
T cd03821 169 ----LKAPIAVIPNGVDIPPFAALP------------------SRGR-RRKFPILP--DKRIILFLGRLHPKKGLDLLIE 223 (375)
T ss_pred ----CcccEEEcCCCcChhccCcch------------------hhhh-hhhccCCC--CCcEEEEEeCcchhcCHHHHHH
Confidence 357899999999988776541 1111 45555543 4578999999999999999999
Q ss_pred HHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHh
Q 011163 328 VVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 404 (492)
Q Consensus 328 a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAm 404 (492)
|+.++.+ .+++|+++|.++ ......++.+++.++. ++|.++|..+.+++..+|+.||++++||.+|+||++++|||
T Consensus 224 a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eam 302 (375)
T cd03821 224 AFAKLAERFPDWHLVIAGPDE-GGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEAL 302 (375)
T ss_pred HHHHhhhhcCCeEEEEECCCC-cchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHH
Confidence 9999986 489999999653 3445556655555543 78999998888888999999999999999999999999999
Q ss_pred hcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHH
Q 011163 405 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 481 (492)
Q Consensus 405 a~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 481 (492)
+||+|+|+++. ||+.|++.+ .+|++++. ++++++++|..++++++.+++++++++. ++|||+.+++++
T Consensus 303 a~G~PvI~~~~--~~~~~~~~~------~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 303 ACGTPVVTTDK--VPWQELIEY------GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred hcCCCEEEcCC--CCHHHHhhc------CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999 999999863 35787765 5589999999999999989999888865 899999999984
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=9.9e-35 Score=289.18 Aligned_cols=355 Identities=17% Similarity=0.138 Sum_probs=241.6
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|++ ++|. .||+++++.+|+++|.++||+|.+++.......... ... ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---~~~----------------------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY---GGE----------------------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC---CCc----------------------cc
Confidence 7999987 4553 599999999999999999999999987543211100 000 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
+. .... ..... . .....+.++ ..+||+||+|.+.+.+.+..........+..++|+
T Consensus 53 ~~--~~~~---------~~~~~-------~----~~~~~~~~~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (366)
T cd03822 53 VV--RVIV---------LDNPL-------D----YRRAARAIR--LSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPV 108 (366)
T ss_pred ce--eeee---------cCCch-------h----HHHHHHHHh--hcCCCEEEEeeccccccchhhHHHHHHHhhcCCCE
Confidence 00 0000 00000 0 022233333 36899999987433222111111100011268999
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
|+++|+..... ... ......+..++.+|.++++|....+++....
T Consensus 109 i~~~h~~~~~~------------~~~--------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--------- 153 (366)
T cd03822 109 VVTLHTVLLHE------------PRP--------------GDRALLRLLLRRADAVIVMSSELLRALLLRA--------- 153 (366)
T ss_pred EEEEecCCccc------------cch--------------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhhc---------
Confidence 99999851100 000 0123456677899999999743333332210
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
...++.+||||+|...+.+.. .. ++..... +.+.++++||+.+.||++.+++|+
T Consensus 154 --~~~~~~~i~~~~~~~~~~~~~-------------------~~---~~~~~~~--~~~~i~~~G~~~~~K~~~~ll~a~ 207 (366)
T cd03822 154 --YPEKIAVIPHGVPDPPAEPPE-------------------SL---KALGGLD--GRPVLLTFGLLRPYKGLELLLEAL 207 (366)
T ss_pred --CCCcEEEeCCCCcCcccCCch-------------------hh---HhhcCCC--CCeEEEEEeeccCCCCHHHHHHHH
Confidence 136899999999976554321 00 2222222 347899999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHH---HHHHHhC-CCeEEEEec-cCHHHHHHHHhcCCEEEECCCCC--CCchHH
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALV---SFQEELK-DGIVIFVDS-YDDALLHLIFSGSDIILCHSFHD--PLLQVP 400 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~---~~~~~~~-~~~v~~~~~-~~~~~~~~~~~~adi~v~pS~~E--~~glv~ 400 (492)
+++.+. +++|+|+|.+.. ....... +++++++ .++|.++++ .+.+++..+|+.||++++||.+| ++|+++
T Consensus 208 ~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~ 286 (366)
T cd03822 208 PLLVAKHPDVRLLVAGETHP-DLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVL 286 (366)
T ss_pred HHHHhhCCCeEEEEeccCcc-chhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHH
Confidence 999863 799999997643 1111111 1234443 279999988 77888899999999999999999 999999
Q ss_pred HHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhH
Q 011163 401 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADC 478 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a 478 (492)
+|||+||+|+|+++. |+ .+.+. ++.+|+++++.|+++++++|..+++|++.+.+++++++. ++|||+.++
T Consensus 287 ~Ea~a~G~PvI~~~~--~~-~~~i~-----~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~ 358 (366)
T cd03822 287 AYAIGFGKPVISTPV--GH-AEEVL-----DGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVA 358 (366)
T ss_pred HHHHHcCCCEEecCC--CC-hheee-----eCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHH
Confidence 999999999999999 88 66654 245789999999999999999999999999999998875 569999999
Q ss_pred HHHHHHHHH
Q 011163 479 NDIHISAYT 487 (492)
Q Consensus 479 ~~~~~~~Y~ 487 (492)
+++ .++|+
T Consensus 359 ~~~-~~~~~ 366 (366)
T cd03822 359 ERY-LRLLA 366 (366)
T ss_pred HHH-HHHhC
Confidence 995 88873
No 48
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=6.8e-35 Score=289.30 Aligned_cols=358 Identities=17% Similarity=0.165 Sum_probs=255.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|++.+.+ ||.++++.+|+++|.+.||+|.+++......... .+. ..
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~~-----------------------~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---ELE-----------------------EA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HHH-----------------------hc
Confidence 78999987544 9999999999999999999999998753321110 000 13
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
|++++.++.. . ... . ......+...++ ..+||+||+|.+.+.+.+...... ..++|+
T Consensus 51 ~i~v~~~~~~-------~-~~~----~----~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKR-------P-GRP----D----PGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLAARL-----AGVPPV 107 (365)
T ss_pred CCeEEEEecc-------c-ccc----c----HHHHHHHHHHHH--hhCCCEEEeccccccHHHHHHHHh-----cCCCcE
Confidence 6666666421 0 000 0 111233344444 368999999986655554433221 157899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
+++.|+...... . . . .. ......+.....+|.++++|+...+.+... +
T Consensus 108 i~~~~~~~~~~~---~-~---------~------~~----~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~------- 155 (365)
T cd03807 108 IWGIRHSDLDLG---K-K---------S------TR----LVARLRRLLSSFIPLIVANSAAAAEYHQAI--G------- 155 (365)
T ss_pred EEEecCCccccc---c-h---------h------Hh----HHHHHHHHhccccCeEEeccHHHHHHHHHc--C-------
Confidence 999997543210 0 0 0 00 011233445567888899999877665432 2
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.+++||+|...|.+... .+...+++++++. +.++++++||+.+.||++.+++|+
T Consensus 156 -~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~i~~~G~~~~~K~~~~li~a~ 215 (365)
T cd03807 156 -YPPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLPE--DTFLIGIVARLHPQKDHATLLRAA 215 (365)
T ss_pred -CChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCCC--CCeEEEEecccchhcCHHHHHHHH
Confidence 13568899999999876655421 2334567788864 357899999999999999999999
Q ss_pred HHHhH--cCcEEEEEecCCChhHHHHHHHHHH-HhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 330 RGAKM--RGIQFVFTGTNKLPSASRALVSFQE-ELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 330 ~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~-~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
.++.+ .+++|+++|.+.. ...+++... ..+. +++.+.+.. +++..+|+.||++++||.+|++|++++|||+
T Consensus 216 ~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 290 (365)
T cd03807 216 ALLLKKFPNARLLLVGDGPD---RANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMA 290 (365)
T ss_pred HHHHHhCCCeEEEEecCCcc---hhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHh
Confidence 99875 3799999997643 223333333 3332 688877643 3467899999999999999999999999999
Q ss_pred cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIH 482 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~ 482 (492)
||+|+|+++. ||..|++.+ +|+++++.|+++++++|..+++|++.+.+++++++. ++|||+.+++++
T Consensus 291 ~g~PvI~~~~--~~~~e~~~~-------~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~- 360 (365)
T cd03807 291 CGLPVVATDV--GDNAELVGD-------TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAY- 360 (365)
T ss_pred cCCCEEEcCC--CChHHHhhc-------CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 9999999999 999998862 579999999999999999999999999999888865 689999999994
Q ss_pred HHHHH
Q 011163 483 ISAYT 487 (492)
Q Consensus 483 ~~~Y~ 487 (492)
.++|+
T Consensus 361 ~~~y~ 365 (365)
T cd03807 361 EELYR 365 (365)
T ss_pred HHHhC
Confidence 88884
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=1.2e-34 Score=287.39 Aligned_cols=358 Identities=16% Similarity=0.126 Sum_probs=242.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||++++.++|. ..||.+.++.+|+++|.++||+|+++++......... . ..
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~-------------------------~~ 52 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK--E-------------------------VI 52 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc--c-------------------------cc
Confidence 799999987775 4699999999999999999999999997644322110 0 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
+......... ...........+.........+...+.+.+. ..+||+||+|.+.. +..... ...+ ..++|+
T Consensus 53 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dii~~~~~~~-~~~~~~-~~~~---~~~~~~ 123 (359)
T cd03823 53 GVVVYGRPID--EVLRSALPRDLFHLSDYDNPAVVAEFARLLE--DFRPDVVHFHHLQG-LGVSIL-RAAR---DRGIPI 123 (359)
T ss_pred cceeeccccc--cccCCCchhhhhHHHhccCHHHHHHHHHHHH--HcCCCEEEECCccc-hHHHHH-HHHH---hcCCCE
Confidence 1111111000 0000000000000000000111233333443 36899999998532 221211 1111 257999
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
|+++|+..... +.. .......|.++++|+...+.+.....
T Consensus 124 i~~~hd~~~~~--~~~------------------------------~~~~~~~d~ii~~s~~~~~~~~~~~~-------- 163 (359)
T cd03823 124 VLTLHDYWLIC--PRQ------------------------------GLFKKGGDAVIAPSRFLLDRYVANGL-------- 163 (359)
T ss_pred EEEEeeeeeec--chh------------------------------hhhccCCCEEEEeCHHHHHHHHHcCC--------
Confidence 99999753210 000 00011228999999988776654211
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
...++.+|+||+|...+.+... +.+ ...+.++++||+.+.||++.+++++
T Consensus 164 --~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~--~~~~~i~~~G~~~~~k~~~~li~~~ 213 (359)
T cd03823 164 --FAEKISVIRNGIDLDRAKRPRR--------------------------APP--GGRLRFGFIGQLTPHKGVDLLLEAF 213 (359)
T ss_pred --CccceEEecCCcChhhcccccc--------------------------CCC--CCceEEEEEecCccccCHHHHHHHH
Confidence 2368999999999876644310 111 2347899999999999999999999
Q ss_pred HHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC-CCCCchHHHHHhhcCC
Q 011163 330 RGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKALKYGA 408 (492)
Q Consensus 330 ~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~-~E~~glv~lEAma~G~ 408 (492)
.++.+.+++|+++|.+... ....... .. .++|.+.|.++.+++..+|+.||++++||. .|+||++++|||+||+
T Consensus 214 ~~l~~~~~~l~i~G~~~~~---~~~~~~~-~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~ 288 (359)
T cd03823 214 KRLPRGDIELVIVGNGLEL---EEESYEL-EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGV 288 (359)
T ss_pred HHHHhcCcEEEEEcCchhh---hHHHHhh-cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCC
Confidence 9987668999999976431 1111111 22 379999999888899999999999999998 7999999999999999
Q ss_pred ceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhHHHHHHHHHHH
Q 011163 409 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTA 488 (492)
Q Consensus 409 PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~~~~~Y~~ 488 (492)
|+|+++. ||..|++. ++.+|+++++.|+++++++|..+++|++.+++++++++. .++++.+++++ +++|++
T Consensus 289 Pvi~~~~--~~~~e~i~-----~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 359 (359)
T cd03823 289 PVIASDI--GGMAELVR-----DGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEP-PRSIEDQAEEY-LKLYRS 359 (359)
T ss_pred CEEECCC--CCHHHHhc-----CCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHH-hhhHHHHHHHH-HHHhhC
Confidence 9999999 99999987 355799999999999999999999999999999988865 34459999994 899863
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1e-34 Score=290.68 Aligned_cols=383 Identities=18% Similarity=0.164 Sum_probs=260.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||+|++.++|. .||.+.++..++++|.++||+|+++++............ ......+
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG--------------------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc--------------------ceEEecC
Confidence 799999987774 399999999999999999999999997644322110000 0011246
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCc-hhhhHHHHHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
+++++.+.... ......+ ........+.......+.....+||+||+|.+ .....+....+. ..++|
T Consensus 59 ~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLPP----YKKNGLL---KRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAP 126 (394)
T ss_pred CeEEEEEecCC----CCccchH---HHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCC
Confidence 77777665210 0000000 01111222223333333312578999999972 222222222121 25889
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+++++|+...... .. .+.... ..... .....+.+..++.+|.++++|+...+.+.. .+
T Consensus 127 ~i~~~h~~~~~~~-----~~-~~~~~~-----~~~~~---~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~--~~------ 184 (394)
T cd03794 127 FVLEVRDLWPESA-----VA-LGLLKN-----GSLLY---RLLRKLERLIYRRADAIVVISPGMREYLVR--RG------ 184 (394)
T ss_pred EEEEehhhcchhH-----HH-ccCccc-----cchHH---HHHHHHHHHHHhcCCEEEEECHHHHHHHHh--cC------
Confidence 9999998532110 00 000000 00000 001244567788999999999998876652 11
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
....++.++|||+|...+.+... ... +..+... .+.+.++++|++.++||++.+++|
T Consensus 185 --~~~~~~~~i~~~~~~~~~~~~~~------------------~~~-~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~~ 241 (394)
T cd03794 185 --VPPEKISVIPNGVDLELFKPPPA------------------DES-LRKELGL--DDKFVVLYAGNIGRAQGLDTLLEA 241 (394)
T ss_pred --CCcCceEEcCCCCCHHHcCCccc------------------hhh-hhhccCC--CCcEEEEEecCcccccCHHHHHHH
Confidence 14578999999999776655421 000 2233332 245789999999999999999999
Q ss_pred HHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCC-----chHHHH
Q 011163 329 VRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL-----LQVPLK 402 (492)
Q Consensus 329 ~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~-----glv~lE 402 (492)
+.++.+. +++|+++|.|+. .+.+++.......++|.+.+..+.+++..+|+.||++++||..|++ |++++|
T Consensus 242 ~~~l~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~E 318 (394)
T cd03794 242 AALLKDRPDIRFLIVGDGPE---KEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFE 318 (394)
T ss_pred HHHHhhcCCeEEEEeCCccc---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHH
Confidence 9999865 899999997643 3445554444434789999888888899999999999999998876 777999
Q ss_pred HhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHH
Q 011163 403 ALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCN 479 (492)
Q Consensus 403 Ama~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~ 479 (492)
||+||+|+|+++. ||..+.+.+ +.+|+++++.|+++++++|..+++|++.++++++++.. ++|||+.+++
T Consensus 319 a~~~G~pvi~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (394)
T cd03794 319 YMAAGKPVLASVD--GESAELVEE-----AGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAE 391 (394)
T ss_pred HHHCCCcEEEecC--CCchhhhcc-----CCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 9999999999999 999998863 45789999999999999999999999999999998875 5899999998
Q ss_pred HH
Q 011163 480 DI 481 (492)
Q Consensus 480 ~~ 481 (492)
++
T Consensus 392 ~~ 393 (394)
T cd03794 392 RL 393 (394)
T ss_pred hc
Confidence 83
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.3e-34 Score=288.47 Aligned_cols=366 Identities=17% Similarity=0.163 Sum_probs=253.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||+++..|+|. .||.+..+.+++++|.++||+|.++++......... . ..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~-------------------------~~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE--E-------------------------VV 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc--c-------------------------cc
Confidence 799999988884 599999999999999999999999998755432110 0 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCch-hhhHHHHHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (492)
++....... ....+ .... ..+.......+. ..+||+||+|+.. .+..+..+++ ..++|
T Consensus 52 ~~~~~~~~~----~~~~~-~~~~--------~~~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~------~~~~~ 110 (374)
T cd03817 52 VVRPFRVPT----FKYPD-FRLP--------LPIPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR------KLGIP 110 (374)
T ss_pred ccccccccc----chhhh-hhcc--------ccHHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH------HcCCC
Confidence 111100000 00000 0000 001122222233 4789999999742 2233222222 26899
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccc-hhhHHHHhhcCceeccCccchhhhhhcccCCCccH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLV-NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 247 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~ 247 (492)
+|+++|+.... + ........... .. ... .+.+..+..+|.++++|+...+.+.. ++
T Consensus 111 ~i~~~~~~~~~--~----~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~~----- 167 (374)
T cd03817 111 VVATYHTMYED--Y----THYVPLGRLLA-----RA-----VVRRKLSRRFYNRCDAVIAPSEKIADLLRE--YG----- 167 (374)
T ss_pred EEEEecCCHHH--H----HHHHhcccchh-----HH-----HHHHHHHHHHhhhCCEEEeccHHHHHHHHh--cC-----
Confidence 99999975310 0 00000000000 00 011 35567788999999999987665543 22
Q ss_pred HHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHH
Q 011163 248 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 327 (492)
Q Consensus 248 ~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~ 327 (492)
...++.++|||+|...+.+.. ....++.++... +.+.++++|++.+.||++.+++
T Consensus 168 ----~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~i~~~G~~~~~k~~~~l~~ 222 (374)
T cd03817 168 ----VKRPIEVIPTGIDLDRFEPVD-------------------GDDERRKLGIPE--DEPVLLYVGRLAKEKNIDFLIR 222 (374)
T ss_pred ----CCCceEEcCCccchhccCccc-------------------hhHHHHhcCCCC--CCeEEEEEeeeecccCHHHHHH
Confidence 235689999999987776541 112245555543 3478999999999999999999
Q ss_pred HHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHh
Q 011163 328 VVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 404 (492)
Q Consensus 328 a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAm 404 (492)
+++.+.+ .+++|+++|.|+ ..+.+++++++++. ++|.+++.++.+++..+|+.||++++||..|++|++++|||
T Consensus 223 ~~~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~ 299 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGDGP---EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAM 299 (374)
T ss_pred HHHHHHHhCCCeEEEEEeCCc---hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHH
Confidence 9999886 479999999663 35567777766543 78999988888889999999999999999999999999999
Q ss_pred hcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHH
Q 011163 405 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIH 482 (492)
Q Consensus 405 a~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~ 482 (492)
+||+|+|+++. |+..|++. ++.+|+++++.+. +++++|..++++++.+++++++++. ++++ .++++
T Consensus 300 ~~g~PvI~~~~--~~~~~~i~-----~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 367 (374)
T cd03817 300 AAGLPVVAVDA--PGLPDLVA-----DGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKV- 367 (374)
T ss_pred HcCCcEEEeCC--CChhhhee-----cCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHH-
Confidence 99999999999 99999987 3567999998887 9999999999999999999988876 4444 55664
Q ss_pred HHHHHH
Q 011163 483 ISAYTA 488 (492)
Q Consensus 483 ~~~Y~~ 488 (492)
+++|++
T Consensus 368 ~~~~~~ 373 (374)
T cd03817 368 EKLYEE 373 (374)
T ss_pred HHHHhc
Confidence 777765
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.5e-33 Score=279.37 Aligned_cols=368 Identities=20% Similarity=0.239 Sum_probs=260.8
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++++..++|. .||.+.++..++++|.+.||+|.++++......... . ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~--~-------------------------~~ 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE--E-------------------------VG 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee--e-------------------------ec
Confidence 799999987775 699999999999999999999999998654322110 0 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
........ ... ... .......+.......+. ..+||+||+|.+..........+ ..++|+
T Consensus 52 ~~~~~~~~------~~~--~~~----~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~------~~~~~~ 111 (374)
T cd03801 52 GIVVVRPP------PLL--RVR----RLLLLLLLALRLRRLLR--RERFDVVHAHDWLALLAAALAAR------LLGIPL 111 (374)
T ss_pred CcceecCC------ccc--ccc----hhHHHHHHHHHHHHHhh--hcCCcEEEEechhHHHHHHHHHH------hcCCcE
Confidence 00000000 000 000 00011111222333333 36899999998655444322222 268999
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++++|+..+........ .. .. ......+..++.+|.++++|+...+.+... ++
T Consensus 112 i~~~h~~~~~~~~~~~~-----~~---------~~-----~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 164 (374)
T cd03801 112 VLTVHGLEFGRPGNELG-----LL---------LK-----LARALERRALRRADRIIAVSEATREELREL-GG------- 164 (374)
T ss_pred EEEeccchhhccccchh-----HH---------HH-----HHHHHHHHHHHhCCEEEEecHHHHHHHHhc-CC-------
Confidence 99999864321110000 00 00 012445677889999999999888776542 21
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.++|||+|...+.+.. ...+...... .+.+.++++|++.+.||++.+++|+
T Consensus 165 -~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~~ 221 (374)
T cd03801 165 -VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP--EDEPVILFVGRLVPRKGVDLLLEAL 221 (374)
T ss_pred -CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc--CCCeEEEEecchhhhcCHHHHHHHH
Confidence 0236899999999987665430 1122222222 2357899999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
..+.+. +++|+++|.+ ...+.+++.+++.+ .++|.+.+..+.+++..+|+.||++++||..|++|++++|||++
T Consensus 222 ~~~~~~~~~~~l~i~G~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~ 298 (374)
T cd03801 222 AKLRKEYPDVRLVIVGDG---PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAA 298 (374)
T ss_pred HHHhhhcCCeEEEEEeCc---HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHc
Confidence 998864 7999999954 34556666665543 37899999898888999999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHH---hccCCchhhHHHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAM---LQDFSWDADCNDIHI 483 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~---~~~fsw~~~a~~~~~ 483 (492)
|+|+|+++. ++..|++.+ +.+|+++++.|+++++++|..+++|++.+++++++++ .++|+|+.+++++ .
T Consensus 299 g~pvI~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 370 (374)
T cd03801 299 GLPVVASDV--GGIPEVVED-----GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAART-E 370 (374)
T ss_pred CCcEEEeCC--CChhHHhcC-----CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHH-H
Confidence 999999999 999999873 5678999999999999999999999999999999887 3899999999995 8
Q ss_pred HHHH
Q 011163 484 SAYT 487 (492)
Q Consensus 484 ~~Y~ 487 (492)
++|+
T Consensus 371 ~~~~ 374 (374)
T cd03801 371 EVYY 374 (374)
T ss_pred HhhC
Confidence 7773
No 53
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=6.6e-35 Score=290.32 Aligned_cols=358 Identities=16% Similarity=0.171 Sum_probs=249.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++++..+.|. ..||+++++.+|+++|.++||+|+++++............ .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--------------------------~ 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLR--------------------------A 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccch--------------------------h
Confidence 688988877663 4699999999999999999999999998754322110000 0
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
.... .. .. ...... .. +............ ..+||+||+|++..... + ..++|+
T Consensus 54 ~~~~--~~---~~---~~~~~~---~~---~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~-----~------~~~~~~ 106 (365)
T cd03809 54 ALRL--LL---RL---PRRLLW---GL---LFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL-----R------LRGVPV 106 (365)
T ss_pred cccc--cc---cc---cccccc---ch---hhHHHHHHHHHhh--hcCCCeeeecccccCcc-----c------CCCCCE
Confidence 0000 00 00 000000 00 0011111122222 36899999998644332 1 268999
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++++|+..+...... .... ... .....++..++.+|.++++|+..++.+... ++
T Consensus 107 i~~~hd~~~~~~~~~-------~~~~------~~~-----~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 160 (365)
T cd03809 107 VVTIHDLIPLRFPEY-------FSPG------FRR-----YFRRLLRRALRRADAIITVSEATKRDLLRY-LG------- 160 (365)
T ss_pred EEEeccchhhhCccc-------CCHH------HHH-----HHHHHHHHHHHHcCEEEEccHHHHHHHHHH-hC-------
Confidence 999998643211000 0000 000 012456778899999999999988877542 21
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.++|||+|...+.+.. ... +....... +.+.++++||+.+.||++.+++++
T Consensus 161 -~~~~~~~vi~~~~~~~~~~~~~-------------------~~~-~~~~~~~~--~~~~i~~~G~~~~~K~~~~~l~~~ 217 (365)
T cd03809 161 -VPPDKIVVIPLGVDPRFRPPPA-------------------EAE-VLRALYLL--PRPYFLYVGTIEPRKNLERLLEAF 217 (365)
T ss_pred -cCHHHEEeeccccCccccCCCc-------------------hHH-HHHHhcCC--CCCeEEEeCCCccccCHHHHHHHH
Confidence 1356899999999987665541 011 22333332 346899999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
..+.+. +++|+++|.++. ......+.+ +..+ .++|.++|..+.+++..+|+.||++++||.+|++|++++|||++
T Consensus 218 ~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~ 295 (365)
T cd03809 218 ARLPAKGPDPKLVIVGKRGW-LNEELLARL-RELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMAC 295 (365)
T ss_pred HHHHHhcCCCCEEEecCCcc-ccHHHHHHH-HHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcC
Confidence 999875 489999996543 222222222 2232 37999999998889999999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
|+|+|+++. |++.|++. .+|+++++.|+++++++|..+++|++.+.+++++++. ++|||+.+++++
T Consensus 296 G~pvI~~~~--~~~~e~~~-------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 296 GTPVIASNI--SSLPEVAG-------DAALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred CCcEEecCC--CCccceec-------CceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999 99999874 2478999999999999999999999999999988865 789999999984
No 54
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.7e-34 Score=289.16 Aligned_cols=232 Identities=14% Similarity=0.019 Sum_probs=184.1
Q ss_pred hHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHH
Q 011163 215 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 294 (492)
Q Consensus 215 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~ 294 (492)
.+...+.||.|++.|+.+++.+.. .++ .+.++.+++||+|.+.+....
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~-~~~---------~~~~i~vvyp~vd~~~~~~~~---------------------- 261 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEA-LWR---------IPERIKRVYPPCDTSGLQALP---------------------- 261 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHH-HcC---------CCCCeEEEcCCCCHHHcccCC----------------------
Confidence 344458899999999998876653 121 235789999999975442210
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH------cCcEEEEEecCCC---hhHHHHHHHHHHHhCC-C
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKL---PSASRALVSFQEELKD-G 364 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~------~~~~lvivG~g~~---~~~~~~l~~~~~~~~~-~ 364 (492)
.....+.+.++++||+.++||++.+|+|+.++.+ .+++|+|+|++.. .++.+++++++++++. +
T Consensus 262 ------~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~ 335 (463)
T PLN02949 262 ------LERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDG 335 (463)
T ss_pred ------ccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCC
Confidence 0001123678999999999999999999998754 3689999997632 2345678888888753 7
Q ss_pred eEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc-ccccccccccceeeeeecCCCH
Q 011163 365 IVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGN 443 (492)
Q Consensus 365 ~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~-e~v~~~~~~~g~~G~~~~~~~~ 443 (492)
+|.|++..+.+++..+|+.||++++||.+|+||++++||||||+|||+++. ||.. |+|.+.. .|.+|++++ |+
T Consensus 336 ~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~--gGp~~eIV~~~~--~g~tG~l~~--~~ 409 (463)
T PLN02949 336 DVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNS--AGPKMDIVLDED--GQQTGFLAT--TV 409 (463)
T ss_pred cEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCC--CCCcceeeecCC--CCcccccCC--CH
Confidence 899999888888999999999999999999999999999999999999999 8875 6665322 256799984 89
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHHhc
Q 011163 444 ISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAIKN 491 (492)
Q Consensus 444 ~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l~~ 491 (492)
++++++|.++++ +++.+++|++++++ ++|||+.+++++ .+.|+++.+
T Consensus 410 ~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~-~~~i~~l~~ 459 (463)
T PLN02949 410 EEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDF-KDAIRPILN 459 (463)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence 999999999998 57778889988876 689999999995 889988754
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.8e-33 Score=277.05 Aligned_cols=339 Identities=15% Similarity=0.101 Sum_probs=237.1
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||+++++.+.| .||.++++.+++++|.+.||+|++++..... .... . ..+
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~--~------------------------~~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY--E------------------------LDP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc--c------------------------cCC
Confidence 79999987665 5999999999999999999999999986543 1100 0 012
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCC-Cc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG-TR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~-~~ 168 (492)
++.+..+..... . ....+ ......+.+.++ ..+||+||+|.+.. . .++.... .+ +|
T Consensus 51 ~~~~~~~~~~~~----~--~~~~~-------~~~~~~~~~~l~--~~~~d~i~~~~~~~--~-~~~~~~~-----~~~~~ 107 (348)
T cd03820 51 KIKVIDLGDKRD----S--KLLAR-------FKKLRRLRKLLK--NNKPDVVISFLTSL--L-TFLASLG-----LKIVK 107 (348)
T ss_pred ccceeecccccc----c--chhcc-------ccchHHHHHhhc--ccCCCEEEEcCchH--H-HHHHHHh-----hcccc
Confidence 333333321000 0 00000 011122333333 36899999998651 1 1121110 23 49
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
++.+.|+....... ... .....+..++.+|.++++|+.... ....
T Consensus 108 ~i~~~~~~~~~~~~--------------------~~~-----~~~~~~~~~~~~d~ii~~s~~~~~-~~~~--------- 152 (348)
T cd03820 108 LIVSEHNSPDAYKK--------------------RLR-----RLLLRRLLYRRADAVVVLTEEDRA-LYYK--------- 152 (348)
T ss_pred EEEecCCCccchhh--------------------hhH-----HHHHHHHHHhcCCEEEEeCHHHHH-Hhhc---------
Confidence 99999964321000 000 011356778899999999998752 1111
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
....++.+||||++...+.+. . ..+.+.++++|++.+.||++.+++|
T Consensus 153 --~~~~~~~vi~~~~~~~~~~~~-----------------------------~--~~~~~~i~~~g~~~~~K~~~~l~~~ 199 (348)
T cd03820 153 --KFNKNVVVIPNPLPFPPEEPS-----------------------------S--DLKSKRILAVGRLVPQKGFDLLIEA 199 (348)
T ss_pred --cCCCCeEEecCCcChhhcccc-----------------------------C--CCCCcEEEEEEeeccccCHHHHHHH
Confidence 145789999999997644321 0 1234689999999999999999999
Q ss_pred HHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 329 VRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 329 ~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
++++.+ .+++|+|+|.+++ .+.+++++++++. .+|.+.+. .+++..+|+.||++++||.+|+||++++|||+
T Consensus 200 ~~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a 274 (348)
T cd03820 200 WAKIAKKHPDWKLRIVGDGPE---REALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMA 274 (348)
T ss_pred HHHHHhcCCCeEEEEEeCCCC---HHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHH
Confidence 999974 4799999997643 4455556666543 67877755 45677999999999999999999999999999
Q ss_pred cCCceEEEecCCCc-ccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 406 YGAAPIAVTSSDIE-FRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 406 ~G~PvV~~~~~~gg-~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
||+|+|+++. ++ ..+++. ++.+|+++++.|+++++++|..+++||+.++++++++.. ++|+|+++++++
T Consensus 275 ~G~Pvi~~~~--~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
T cd03820 275 FGLPVISFDC--PTGPSEIIE-----DGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQW 346 (348)
T ss_pred cCCCEEEecC--CCchHhhhc-----cCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 9999999997 54 445554 345799999999999999999999999999999988854 889999999984
No 56
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=6.3e-33 Score=280.39 Aligned_cols=385 Identities=14% Similarity=0.021 Sum_probs=238.5
Q ss_pred cccccccC-cHHHHHhHHHHHHHHC--CCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECCeEEE
Q 011163 18 MDPLVSIG-SLASYVTGLSGALQRK--GHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVT 94 (492)
Q Consensus 18 ~~p~~~~G-G~~~~~~~l~~~L~~~--Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 94 (492)
++|+...| |.++++.+.+.+|.+. ||+|+|+|..+...... .+......|. ....++++++
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~---~l~~~~~~f~-------------~~~~~~~~~~ 69 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEE---ILEKVESRFN-------------IELDRPRIVF 69 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHH---HHHHHHHhcC-------------eecCCCceEE
Confidence 44554556 9999999999999998 89999999875432100 0000000111 1123455654
Q ss_pred EEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHc-CCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEe
Q 011163 95 FIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKS-RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSC 173 (492)
Q Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~ 173 (492)
++.. ...++.+ ..++..-....+ ...+...++.. +.+||||..|...+...+. + +. +.++|+|+.+
T Consensus 70 ~~~~--~~~~~~~-~~~~r~~~~~~~---~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~-~-~~-----~~~~~~i~y~ 136 (419)
T cd03806 70 FLLK--YRKLVEA-STYPRFTLLGQA---LGSMILGLEALLKLVPDIFIDTMGYPFTYPL-V-RL-----LGGCPVGAYV 136 (419)
T ss_pred EEec--ceeeecc-ccCCceeeHHHH---HHHHHHHHHHHHhcCCCEEEEcCCcccHHHH-H-HH-----hcCCeEEEEe
Confidence 4410 0001111 112111011111 11122222222 3579998888622222222 1 22 1578999999
Q ss_pred cCCCCCCCCCchhhhh--cCC---C-ccccCCCC---cccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCC
Q 011163 174 HNLNSLCLEHPDKLAL--CGL---D-PARLHRPD---RLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 244 (492)
Q Consensus 174 H~~~~~~~~~~~~~~~--~~~---~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~ 244 (492)
|= +. .+.+.+.. .+. . ...+.+.. ..+...-+.+..+++...+.||.++++|+...+.+... ++
T Consensus 137 h~--P~--~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~-~~-- 209 (419)
T cd03806 137 HY--PT--ISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL-WK-- 209 (419)
T ss_pred cC--Cc--chHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH-hC--
Confidence 91 10 00111110 010 0 00000000 00000000011256677889999999999888776542 21
Q ss_pred ccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH
Q 011163 245 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 324 (492)
Q Consensus 245 l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~ 324 (492)
...++.+||||+|++.|.+... . ...+.+.|+++||+.++||++.
T Consensus 210 -------~~~~~~vi~~gvd~~~~~~~~~--------------------------~--~~~~~~~il~vgr~~~~K~~~~ 254 (419)
T cd03806 210 -------RNTKPSIVYPPCDVEELLKLPL--------------------------D--EKTRENQILSIAQFRPEKNHPL 254 (419)
T ss_pred -------cCCCcEEEcCCCCHHHhccccc--------------------------c--cccCCcEEEEEEeecCCCCHHH
Confidence 1248999999999876654310 0 0123468999999999999999
Q ss_pred HHHHHHHHhHc-------CcEEEEEecCCC---hhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCC
Q 011163 325 LKAVVRGAKMR-------GIQFVFTGTNKL---PSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFH 393 (492)
Q Consensus 325 li~a~~~l~~~-------~~~lvivG~g~~---~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~ 393 (492)
+++|+.++.+. +++|+|+|++.. .++.+.+++++++++. ++|.|++..+.+++..+|+.||++++||..
T Consensus 255 li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~ 334 (419)
T cd03806 255 QLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWN 334 (419)
T ss_pred HHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCcc
Confidence 99999998752 489999997632 2356778888888754 799999998989999999999999999999
Q ss_pred CCCchHHHHHhhcCCceEEEecCCCccc-ccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHH-HHHHHHHHh--
Q 011163 394 DPLLQVPLKALKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSW-KRKIKDAML-- 469 (492)
Q Consensus 394 E~~glv~lEAma~G~PvV~~~~~~gg~~-e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~-~~~~~~a~~-- 469 (492)
|+||++++||||||+|||++++ ||.. |+|... .+|.+|++++ |+++++++|..++++++.. +.+++++..
T Consensus 335 E~Fgi~~lEAMa~G~pvIa~~~--ggp~~~iv~~~--~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~ 408 (419)
T cd03806 335 EHFGIGVVEYMAAGLIPLAHAS--GGPLLDIVVPW--DGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSV 408 (419)
T ss_pred CCcccHHHHHHHcCCcEEEEcC--CCCchheeecc--CCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 7754 566411 1256899974 8999999999999866544 444444333
Q ss_pred ccCCchhhHH
Q 011163 470 QDFSWDADCN 479 (492)
Q Consensus 470 ~~fsw~~~a~ 479 (492)
++|||+.+.+
T Consensus 409 ~~fs~~~f~~ 418 (419)
T cd03806 409 KRFSDEEFER 418 (419)
T ss_pred HhhCHHHhcc
Confidence 7899998653
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=9.2e-33 Score=273.11 Aligned_cols=351 Identities=18% Similarity=0.220 Sum_probs=245.7
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++++.. .||.+.++.+++++|.+.||+|+++++........ ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL----------------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc----------------------------ccC
Confidence 68999974 48999999999999999999999999764432100 123
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
|+.++.++... .....+ ........+.+.++ ..+||+||+|...+.+.+.+.++. ..+.++
T Consensus 47 ~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLDR-----RGINPF-------KDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEeccccc-----cccChH-------hHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 55555554210 000001 11111233333444 378999999986555554444331 156788
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
+++.|+..+...... . . .. ......+...+.+|.++++|+...+.+......
T Consensus 108 i~~~~~~~~~~~~~~-------~-~--------~~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~------- 159 (359)
T cd03808 108 IYTVHGLGFVFTSGG-------L-K--------RR-----LYLLLERLALRFTDKVIFQNEDDRDLALKLGII------- 159 (359)
T ss_pred EEEecCcchhhccch-------h-H--------HH-----HHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCC-------
Confidence 888887543111000 0 0 00 012345667788999999999888766542110
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.+++||+|.+.+.+... . . ..+.+.++++|++.+.||++.+++++
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~-----------------~---------~--~~~~~~i~~~G~~~~~k~~~~li~~~ 210 (359)
T cd03808 160 -KKKKTVLIPGSGVDLDRFSPSPE-----------------P---------I--PEDDPVFLFVARLLKDKGIDELLEAA 210 (359)
T ss_pred -CcCceEEecCCCCChhhcCcccc-----------------c---------c--CCCCcEEEEEeccccccCHHHHHHHH
Confidence 01356788899999876655410 0 0 12357899999999999999999999
Q ss_pred HHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 330 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
+.+.+ .+++|+|+|.+......... +..... .++|.+.|. .+++..+|+.||++++||.+|+||++++|||+|
T Consensus 211 ~~l~~~~~~~~l~i~G~~~~~~~~~~~--~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~ 286 (359)
T cd03808 211 RILKAKGPNVRLLLVGDGDEENPAAIL--EIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAM 286 (359)
T ss_pred HHHHhcCCCeEEEEEcCCCcchhhHHH--HHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHc
Confidence 99875 47999999976432221111 123332 378888876 345678999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 481 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 481 (492)
|+|+|+++. ++..|++. ++.+|++++++|+++++++|..+++|++.+.++++++++ ++|||+.+++++
T Consensus 287 G~Pvi~s~~--~~~~~~i~-----~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 287 GRPVIATDV--PGCREAVI-----DGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred CCCEEEecC--CCchhhhh-----cCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 999999999 99999986 356799999999999999999999999999999988865 799999999884
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1.1e-32 Score=273.86 Aligned_cols=370 Identities=19% Similarity=0.241 Sum_probs=256.8
Q ss_pred EEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECC
Q 011163 11 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 90 (492)
Q Consensus 11 Il~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 90 (492)
||++++.++|. ..||.+.++..++++|.+.||+|+++++.............. ....
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~----------------------~~~~ 57 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGR----------------------LVGV 57 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccc----------------------cccc
Confidence 57888765553 359999999999999999999999999764432211000000 0000
Q ss_pred eEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCch-hhhHHHHHHHHHhhcCCCCCcE
Q 011163 91 IGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 91 v~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
...... .. .............+...+...+.....+||+||+|... ..+....+.+ ..++|+
T Consensus 58 ~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~------~~~~~~ 120 (377)
T cd03798 58 ERLPVL--------LP---VVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR------KLGIPL 120 (377)
T ss_pred cccccC--------cc---hhhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH------hcCCCE
Confidence 000000 00 00000011112233344455554224789999999633 2333233322 257899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
++++|+......... . . .....+..++.+|.++++|+...+.+....
T Consensus 121 i~~~h~~~~~~~~~~------------------~-~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--------- 167 (377)
T cd03798 121 VVTLHGSDVNLLPRK------------------R-L-----LRALLRRALRRADAVIAVSEALADELKALG--------- 167 (377)
T ss_pred EEEeecchhcccCch------------------h-h-----HHHHHHHHHhcCCeEEeCCHHHHHHHHHhc---------
Confidence 999997543211000 0 0 124566778899999999998887665421
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 329 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~ 329 (492)
....++.+++||+|.+.+.+... ... .+++.. .+.+.++++|++.+.||++.+++++
T Consensus 168 -~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~---~~~~~~--~~~~~i~~~g~~~~~k~~~~li~~~ 224 (377)
T cd03798 168 -IDPEKVTVIPNGVDTERFSPADR-----------------AEA---RKLGLP--EDKKVILFVGRLVPRKGIDYLIEAL 224 (377)
T ss_pred -CCCCceEEcCCCcCcccCCCcch-----------------HHH---HhccCC--CCceEEEEeccCccccCHHHHHHHH
Confidence 14578999999999887766421 000 223332 2457899999999999999999999
Q ss_pred HHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 330 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 330 ~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
+.+.+. +++|+++|.+.. .+.++++++.++. ++|.+.|..+.+++..+++.||++++||..|++|++++|||+|
T Consensus 225 ~~~~~~~~~~~l~i~g~~~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~ 301 (377)
T cd03798 225 ARLLKKRPDVHLVIVGDGPL---REALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMAC 301 (377)
T ss_pred HHHHhcCCCeEEEEEcCCcc---hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhc
Confidence 998763 799999996642 3456666665443 7899999999889999999999999999999999999999999
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHH
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHI 483 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~ 483 (492)
|+|+|+++. |+..|++.+ +.+|+++++.|+++++++|..++++++. +++++++. ++|+|+.+++++ .
T Consensus 302 G~pvI~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~-~ 371 (377)
T cd03798 302 GLPVVATDV--GGIPEIITD-----GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERL-L 371 (377)
T ss_pred CCCEEEecC--CChHHHhcC-----CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHH-H
Confidence 999999999 999999873 4568999999999999999999998876 45555443 789999999995 8
Q ss_pred HHHHHH
Q 011163 484 SAYTAI 489 (492)
Q Consensus 484 ~~Y~~l 489 (492)
++|+++
T Consensus 372 ~~~~~l 377 (377)
T cd03798 372 ELYREV 377 (377)
T ss_pred HHHhhC
Confidence 898764
No 59
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=100.00 E-value=9.2e-33 Score=275.95 Aligned_cols=433 Identities=12% Similarity=0.075 Sum_probs=248.8
Q ss_pred ccCcHHHHHhHHHHHHHH-CCCeEEEEeecCCCCCccccccccee----eeeeeeecCCeeeEEEEEEEEECCeEEEEEc
Q 011163 23 SIGSLASYVTGLSGALQR-KGHLVEVILPKYACMNLDGVQGLREI----KAECYSYFNGQLHANKIWIGVVSGIGVTFIQ 97 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~-~Gh~V~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~ 97 (492)
++||+-+++..-+..+.+ .|-+..++.|........+.+...+- ....+ ........+.+-++.++|-+...+=
T Consensus 14 KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~-~~~~~g~~v~~GrW~i~G~P~viL~ 92 (590)
T cd03793 14 KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALD-RMRSRGIKVHFGRWLIEGYPKVVLF 92 (590)
T ss_pred cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHH-HHHhCCCeEEEeEEEcCCCCeEEEE
Confidence 689999999999998877 59999999987542211111111110 00000 0011122344555567777754332
Q ss_pred cCCCCCCccC-------------CCCCCCCC--hhHHHHHHHHHHHHHHHHc--CCCCCEEEEcCchhhhHHHHHHHHHh
Q 011163 98 PLHYSSFFNR-------------ESVYGYSD--DFERFTYFSRASLDYIVKS--RKQPDVLHIHNWETAIVGPLFWDIFV 160 (492)
Q Consensus 98 ~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~pDiVh~h~~~~~~~~~~~~~~~~ 160 (492)
.. .+.+... ..+.++.+ +..-|.+....+++.+.+. ..++||+|+|+|+++..+.++++.
T Consensus 93 D~-~~~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g~a~~~lK~~-- 169 (590)
T cd03793 93 DI-GSAAWKLDEWKGELWELCGIGSPEGDRETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAGVGLPLLRKR-- 169 (590)
T ss_pred eC-chhhhhHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHhHHHHHHHHh--
Confidence 11 1111110 11222222 3344444444444433332 357999999999999887777532
Q ss_pred hcCCCCCcEEEEecCCCCCCC-CCch-----hhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchh
Q 011163 161 KQGLEGTRILLSCHNLNSLCL-EHPD-----KLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSK 234 (492)
Q Consensus 161 ~~~~~~~~~v~t~H~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 234 (492)
..++|+|+|+|.+..... +..+ .+.....+... .....+ ....+++.+...||.+|+||+.+++
T Consensus 170 ---~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA----~~~~I~---~r~~iE~~aa~~Ad~fttVS~it~~ 239 (590)
T cd03793 170 ---KVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEA----GKRGIY---HRYCIERAAAHCAHVFTTVSEITAY 239 (590)
T ss_pred ---CCCCCEEEEecccccccccccCCcccchhhhhcchhhhh----hcccch---HHHHHHHHHHhhCCEEEECChHHHH
Confidence 378999999997654221 1111 00000000000 000000 1124678889999999999999998
Q ss_pred hhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCcc-ChHHHHHHHHHHhCCCCCCCceEEEE-
Q 011163 235 GRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMK-GKTVCKVTLQQQLGLSKDASTIVVGC- 312 (492)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~i~~- 312 (492)
++.. .++ .++++ |||||+|.+.|.+..+.- +..+..-+ -....+..++.+++++.+ .++++|
T Consensus 240 E~~~-Ll~--------~~pd~--ViPNGid~~~f~~~~e~~---~~~~~~k~ki~~f~~~~~~~~~~~~~d--~tli~f~ 303 (590)
T cd03793 240 EAEH-LLK--------RKPDV--VLPNGLNVKKFSALHEFQ---NLHAQSKEKINEFVRGHFYGHYDFDLD--KTLYFFT 303 (590)
T ss_pred HHHH-HhC--------CCCCE--EeCCCcchhhcccchhhh---hhhHHhhhhhhHHHHHHHhhhcCCCCC--CeEEEEE
Confidence 8764 222 24455 999999999887642100 00000000 000112335666777543 355555
Q ss_pred Eecccc-ccCHHHHHHHHHHHhH---c---C---cEEEEEecCCC----------h---hHHHHHHHH------------
Q 011163 313 IFSDVS-DVFLENLKAVVRGAKM---R---G---IQFVFTGTNKL----------P---SASRALVSF------------ 357 (492)
Q Consensus 313 ~grl~~-~Kg~~~li~a~~~l~~---~---~---~~lvivG~g~~----------~---~~~~~l~~~------------ 357 (492)
+||+.. +||+|.||+|++++.. . + +-|+|+-.+-. . ++.+.+..+
T Consensus 304 ~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~ 383 (590)
T cd03793 304 AGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAA 383 (590)
T ss_pred eeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHh
Confidence 799998 9999999999998875 1 2 23444421100 0 011111111
Q ss_pred ---------------------------------------------------HHHhC-----CCeE--EEEecc----C--
Q 011163 358 ---------------------------------------------------QEELK-----DGIV--IFVDSY----D-- 373 (492)
Q Consensus 358 ---------------------------------------------------~~~~~-----~~~v--~~~~~~----~-- 373 (492)
.++++ .++| +|...+ +
T Consensus 384 l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~ 463 (590)
T cd03793 384 LKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPL 463 (590)
T ss_pred hccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCc
Confidence 00000 1333 344333 1
Q ss_pred -HHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccc-eeeeeec-------CCCHH
Q 011163 374 -DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTR-FSRFISS-------TFGNI 444 (492)
Q Consensus 374 -~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g-~~G~~~~-------~~~~~ 444 (492)
.....+++++||++|+||++||||++++||||||+|+|+|+. +|+.+.+.+.. +++ ..|.++. +.+.+
T Consensus 464 ~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~--~gf~~~v~E~v-~~~~~~gi~V~~r~~~~~~e~v~ 540 (590)
T cd03793 464 LGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNL--SGFGCFMEEHI-EDPESYGIYIVDRRFKSPDESVQ 540 (590)
T ss_pred CCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccC--cchhhhhHHHh-ccCCCceEEEecCCccchHHHHH
Confidence 123568899999999999999999999999999999999999 99965543211 112 2466665 34457
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH----hccCCchhhHHHHHHHHHHHHh
Q 011163 445 SLSQALEEIKNNPLSWKRKIKDAM----LQDFSWDADCNDIHISAYTAIK 490 (492)
Q Consensus 445 ~l~~ai~~~~~~~~~~~~~~~~a~----~~~fsw~~~a~~~~~~~Y~~l~ 490 (492)
+|+++|..+++. +.++++.+.+. .+.|+|++.++. |.+.|+.+.
T Consensus 541 ~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~-Y~~A~~~Al 588 (590)
T cd03793 541 QLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRY-YRKARQLAL 588 (590)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHh
Confidence 899999998854 45555554433 278999999999 589998653
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.3e-33 Score=284.84 Aligned_cols=380 Identities=11% Similarity=0.038 Sum_probs=234.9
Q ss_pred EEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECC
Q 011163 11 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 90 (492)
Q Consensus 11 Il~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 90 (492)
||++|+. +|++-.+|-...++++.++|++. |+|++++.............++.. .+.
T Consensus 1 iL~~~~~-~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~---------------------~~~ 57 (397)
T TIGR03087 1 ILYLVHR-IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPL---------------------CEE 57 (397)
T ss_pred CeeecCC-CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHH---------------------hhe
Confidence 6888874 55544556699999999999886 899999976432211110111110 011
Q ss_pred eEEEEEccCC-----CCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCC
Q 011163 91 IGVTFIQPLH-----YSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 165 (492)
Q Consensus 91 v~v~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~ 165 (492)
+.+..++... ...++.. .++.. .......+.+.+.+.+. ..++|+||+++...+ .++.. +..
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~-~p~~~--~~~~~~~~~~~l~~~~~--~~~~D~v~~~~~~~~---~~~~~-----~~~ 124 (397)
T TIGR03087 58 VCVVPLDPRVARLRSLLGLLTG-EPLSL--PYYRSRRLARWVNALLA--AEPVDAIVVFSSAMA---QYVTP-----HVR 124 (397)
T ss_pred eEEeecCcHHHHHHHHhhhcCC-CCCcc--hhhCCHHHHHHHHHHHh--hCCCCEEEEeccccc---eeccc-----ccc
Confidence 1111111000 0000100 11110 00000112223333333 368999999874322 22211 125
Q ss_pred CCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCc
Q 011163 166 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 245 (492)
Q Consensus 166 ~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l 245 (492)
++|.|++.||..... + ............++. +.+ .+....+++..++.+|.++++|+..++.+.....
T Consensus 125 ~~p~i~~~~d~~~~~-~-~~~~~~~~~~~~~~~---~~~---~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~---- 192 (397)
T TIGR03087 125 GVPRIVDFVDVDSDK-W-LQYARTKRWPLRWIY---RRE---GRLLLAYERAIAARFDAATFVSRAEAELFRRLAP---- 192 (397)
T ss_pred CCCeEeehhhHHHHH-H-HHHHhccCcchhHHH---HHH---HHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCC----
Confidence 789999999854210 0 000000000000000 000 0011245677889999999999998876653211
Q ss_pred cHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHH
Q 011163 246 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 325 (492)
Q Consensus 246 ~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~l 325 (492)
....++.+||||+|.+.|.|.... ...+. .+.++++|+||+.+.||++.+
T Consensus 193 -----~~~~~v~vipngvd~~~f~~~~~~-----------------------~~~~~--~~~~~ilf~G~l~~~k~~~~l 242 (397)
T TIGR03087 193 -----EAAGRITAFPNGVDADFFSPDRDY-----------------------PNPYP--PGKRVLVFTGAMDYWPNIDAV 242 (397)
T ss_pred -----CCCCCeEEeecccchhhcCCCccc-----------------------cCCCC--CCCcEEEEEEecCCccCHHHH
Confidence 134689999999999888764210 00011 123678999999999999998
Q ss_pred H----HHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC-CCCCch
Q 011163 326 K----AVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQ 398 (492)
Q Consensus 326 i----~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~-~E~~gl 398 (492)
+ ++++.+.+ .+++|+|+|+|+. +.++++.. .++|.|+|..+ ++..+|+.||++|+||. .||+|+
T Consensus 243 ~~~~~~~~~~l~~~~p~~~l~ivG~g~~----~~~~~l~~---~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~ 313 (397)
T TIGR03087 243 VWFAERVFPAVRARRPAAEFYIVGAKPS----PAVRALAA---LPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQN 313 (397)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCCCh----HHHHHhcc---CCCeEEeeecC--CHHHHHHhCCEEEecccccCCccc
Confidence 8 45555553 3799999997742 23444322 25799888776 35689999999999997 699999
Q ss_pred HHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Q 011163 399 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 475 (492)
Q Consensus 399 v~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~ 475 (492)
+++||||||+|||+|+. |+- .+.. .+++|++++ .|+++++++|.++++|++.+++|+++++. ++|||+
T Consensus 314 ~~lEAma~G~PVV~t~~--~~~-~i~~-----~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 314 KVLEAMAMAKPVVASPE--AAE-GIDA-----LPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHcCCCEEecCc--ccc-cccc-----cCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999987 432 2222 134578886 89999999999999999999999999875 689999
Q ss_pred hhHHHHHHHHHH
Q 011163 476 ADCNDIHISAYT 487 (492)
Q Consensus 476 ~~a~~~~~~~Y~ 487 (492)
.+++++ +++|+
T Consensus 385 ~~~~~~-~~~l~ 395 (397)
T TIGR03087 385 RNLARL-DALLE 395 (397)
T ss_pred HHHHHH-HHHhc
Confidence 999995 88875
No 61
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=3.3e-31 Score=267.21 Aligned_cols=372 Identities=15% Similarity=0.094 Sum_probs=223.6
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHC-CCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEE-
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI- 85 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~-Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (492)
+-+|++||+--.||- -|+..--.=-|..|++. |++|+++.|--...++....+-. ..|.. +..|...++-|.
T Consensus 322 ~r~~~ivTtAslPWm--TGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~---~~F~~-p~eQe~~ir~wl~ 395 (794)
T PLN02501 322 KRHVAIVTTASLPWM--TGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNN---LTFSS-PEEQESYIRNWLE 395 (794)
T ss_pred CCeEEEEEcccCccc--ccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCC---cccCC-HHHHHHHHHHHHH
Confidence 358999999889984 45555444456667887 79999999864422111100000 00000 000000000000
Q ss_pred E---EECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCc-hhhhH--HHHHHHHH
Q 011163 86 G---VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIV--GPLFWDIF 159 (492)
Q Consensus 86 ~---~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~-~~~~~--~~~~~~~~ 159 (492)
. ...+..+.+. |..|...+ . -++-.-.+.+.+. .++|||||+++. +.++. +..++++
T Consensus 396 ~r~g~~~~~~i~fY-----pg~~~~~~-~--------SI~p~gdI~~~L~--~f~PDVVHLatP~~LGw~~~Glr~ArK- 458 (794)
T PLN02501 396 ERIGFKADFKISFY-----PGKFSKER-R--------SIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDK- 458 (794)
T ss_pred HhcCCCCCceEEee-----cchhccCC-c--------cccchHHHHHHhh--ccCCCEEEECCchhhccHHHHHHHHHH-
Confidence 0 0012222222 11222111 0 0111122333333 479999999983 33444 3333332
Q ss_pred hhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhh--cCceeccCccchhhhh
Q 011163 160 VKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVY--SNKVVIVSSMHSKGRI 237 (492)
Q Consensus 160 ~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ad~vi~vS~~~~~~~~ 237 (492)
.+ |+|.++|+-... . +...+.. .+..+ ...++...+.. +|.|+++|.... ++.
T Consensus 459 -----l~-PVVasyHTny~e-Y-----l~~y~~g--------~L~~~----llk~l~~~v~r~hcD~VIaPS~atq-~L~ 513 (794)
T PLN02501 459 -----FN-HVVGVVHTNYLE-Y-----IKREKNG--------ALQAF----FVKHINNWVTRAYCHKVLRLSAATQ-DLP 513 (794)
T ss_pred -----cC-CeEEEEeCCcHH-H-----HhHhcch--------hHHHH----HHHHHHHHHHHhhCCEEEcCCHHHH-Hhc
Confidence 46 899999974311 0 0000100 00000 01112222222 899999997654 221
Q ss_pred hcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 011163 238 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 317 (492)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~ 317 (492)
...+. ..||||++.|.|.. +...++++|++... ..++|+||+.
T Consensus 514 ---------------~~vI~-nVnGVDte~F~P~~-------------------r~~~~r~lgi~~~~--kgiLfVGRLa 556 (794)
T PLN02501 514 ---------------KSVIC-NVHGVNPKFLKIGE-------------------KVAEERELGQQAFS--KGAYFLGKMV 556 (794)
T ss_pred ---------------cccee-ecccccccccCCcc-------------------hhHHHHhcCCcccc--CceEEEEccc
Confidence 11222 22699999998862 22223566765432 3478899999
Q ss_pred cccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCC
Q 011163 318 SDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDP 395 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~ 395 (492)
++||++.|++|++.+.+. +++|+|+|+|++ .+.+++++.+++ -+|.|+|+.+.. ..+|+.+|+||+||.+|+
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~---reeLe~la~eLg-L~V~FLG~~dd~--~~lyasaDVFVlPS~sEg 630 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFNLDVFGNGED---AHEVQRAAKRLD-LNLNFLKGRDHA--DDSLHGYKVFINPSISDV 630 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCcc---HHHHHHHHHHcC-CEEEecCCCCCH--HHHHHhCCEEEECCCccc
Confidence 999999999999988753 799999998853 567888888764 468887665432 378999999999999999
Q ss_pred CchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Q 011163 396 LLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWD 475 (492)
Q Consensus 396 ~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~ 475 (492)
||++++||||||+|||+++. +|.. ++. ++.+|+++ +|+++++++|..+++|+.....+.. ...|||+
T Consensus 631 FGlVlLEAMA~GlPVVATd~--pG~e-~V~-----~g~nGll~--~D~EafAeAI~~LLsd~~~rl~~~a---~~~~SWe 697 (794)
T PLN02501 631 LCTATAEALAMGKFVVCADH--PSNE-FFR-----SFPNCLTY--KTSEDFVAKVKEALANEPQPLTPEQ---RYNLSWE 697 (794)
T ss_pred chHHHHHHHHcCCCEEEecC--CCCc-eEe-----ecCCeEec--CCHHHHHHHHHHHHhCchhhhHHHH---HhhCCHH
Confidence 99999999999999999999 7743 344 24456664 7899999999999988764433332 2479999
Q ss_pred hhHHHHHHH
Q 011163 476 ADCNDIHIS 484 (492)
Q Consensus 476 ~~a~~~~~~ 484 (492)
.+++++ ++
T Consensus 698 AaadrL-le 705 (794)
T PLN02501 698 AATQRF-ME 705 (794)
T ss_pred HHHHHH-HH
Confidence 999995 63
No 62
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=5.5e-32 Score=276.71 Aligned_cols=279 Identities=9% Similarity=0.027 Sum_probs=199.2
Q ss_pred CCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchh
Q 011163 135 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNI 214 (492)
Q Consensus 135 ~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (492)
..++||+|++..... .++++.. ...+|.++++|+..+...... .. ...+. .....
T Consensus 209 ~~~~di~i~dr~~~~-~~~~~~~------~~~~~~v~~lH~~h~~~~~~~---------~~-------~~~~~--~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGI-GQAVLEN------KGPAKLGVVVHAEHFSESATN---------ET-------YILWN--NYYEY 263 (500)
T ss_pred CCCCCEEEEcCCccc-chHHHhc------CCCceEEEEEChhhhcCccCc---------ch-------hHHHH--HHHHH
Confidence 467999999763322 1122322 257899999997432111000 00 00000 00011
Q ss_pred hHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHH
Q 011163 215 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 294 (492)
Q Consensus 215 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~ 294 (492)
....++.+|.+|++|+..++.+...... ......++.+||||++...+.|..
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~l~~~~~~------~~~~~~ki~viP~g~~~~~~~~~~---------------------- 315 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQILKNQFKK------YYNIEPRIYTIPVGSLDELQYPEQ---------------------- 315 (500)
T ss_pred HHhchhhCCEEEECCHHHHHHHHHHhhh------hcCCCCcEEEEcCCCcccccCccc----------------------
Confidence 1123567899999999877766542110 001246899999998744332210
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEec
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDS 371 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~ 371 (492)
......++++||+.++||++.|++|+.++.+ .+++|+|+|+|+ ..+.+++++++++. ++|.|.|.
T Consensus 316 ---------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---~~~~l~~~i~~~~l~~~V~f~G~ 383 (500)
T TIGR02918 316 ---------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---EKQKLQKIINENQAQDYIHLKGH 383 (500)
T ss_pred ---------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch---hHHHHHHHHHHcCCCCeEEEcCC
Confidence 0123578999999999999999999999875 389999999774 35678888887653 78998874
Q ss_pred cCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCC----C----H
Q 011163 372 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTF----G----N 443 (492)
Q Consensus 372 ~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~----~----~ 443 (492)
. .+..+|+.||++|+||.+||||++++||||||+|||+++++ ||.+|+|. +|.+|++++++ | +
T Consensus 384 ~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~-~G~~eiI~-----~g~nG~lv~~~~~~~d~~~~~ 454 (500)
T TIGR02918 384 R---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN-YGNPTFIE-----DNKNGYLIPIDEEEDDEDQII 454 (500)
T ss_pred C---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC-CCCHHHcc-----CCCCEEEEeCCccccchhHHH
Confidence 3 35578999999999999999999999999999999999982 38999987 47789999843 3 7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 444 ISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 444 ~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
++|+++|..+++ ++.+.+|+++|++ ++|||+.++++ |.++++++
T Consensus 455 ~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~~v~~~-w~~ll~~~ 500 (500)
T TIGR02918 455 TALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTANIIEK-WKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHhhC
Confidence 899999999995 5568899999876 79999999999 48888764
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2.8e-31 Score=261.63 Aligned_cols=337 Identities=18% Similarity=0.162 Sum_probs=232.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||+++++.+. .||.++++.+++++|.+.||+|.+++.............. ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~------------------------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSN------------------------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccc------------------------hh
Confidence 7899998543 5999999999999999999999999976543221100000 00
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCc-hhhhHHHHHHHHHhhcCCCCCc
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
........ . .... ...+...+...+++ .+||+||+|.. .+.+. ..+... .++|
T Consensus 53 ~~~~~~~~---------~-~~~~-------~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~-~~~~~~------~~~~ 106 (353)
T cd03811 53 LIPVRVLK---------L-KSLR-------DLLAILRLRRLLRK--EKPDVVISHLTTTPNVL-ALLAAR------LGTK 106 (353)
T ss_pred hhceeeee---------c-cccc-------chhHHHHHHHHHHh--cCCCEEEEcCccchhHH-HHHHhh------cCCc
Confidence 00000000 0 0000 01112334444443 68999999986 33333 222221 2789
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+++++|+......... . . .....+..+..+|.++++|+..++.+... ++
T Consensus 107 ~i~~~~~~~~~~~~~~------------------~-~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 155 (353)
T cd03811 107 LIVWEHNSLSLELKRK------------------L-R-----LLLLIRKLYRRADKIVAVSEGVKEDLLKL-LG------ 155 (353)
T ss_pred eEEEEcCcchhhhccc------------------h-h-----HHHHHHhhccccceEEEeccchhhhHHHh-hc------
Confidence 9999997543110000 0 0 00235566788999999999988766542 11
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 328 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a 328 (492)
....++.+||||+|.+.+.+.... . . .++.. .+...++++||+.+.||++.+++|
T Consensus 156 --~~~~~~~vi~~~~~~~~~~~~~~~-----------------~--~--~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~ 210 (353)
T cd03811 156 --IPPDKIEVIYNPIDIEEIRALAEE-----------------P--L--ELGIP--PDGPVILAVGRLSPQKGFDTLIRA 210 (353)
T ss_pred --CCccccEEecCCcChhhcCcccch-----------------h--h--hcCCC--CCceEEEEEecchhhcChHHHHHH
Confidence 125789999999998766554210 0 0 22222 245789999999999999999999
Q ss_pred HHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhh
Q 011163 329 VRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 405 (492)
Q Consensus 329 ~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma 405 (492)
++.+.+. +++|+++|.++ ..+.++++.+.++. ++|.+.+..+ ++..+++.||++++||.+|++|++++|||+
T Consensus 211 ~~~l~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~ 285 (353)
T cd03811 211 FALLRKEGPDARLVILGDGP---LREELEALAKELGLADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMA 285 (353)
T ss_pred HHHhhhcCCCceEEEEcCCc---cHHHHHHHHHhcCCCccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHH
Confidence 9999864 89999999664 34456666666643 6888876643 356899999999999999999999999999
Q ss_pred cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHH---HHHHHHHhcCHHHHHHHHHHHH
Q 011163 406 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISL---SQALEEIKNNPLSWKRKIKDAM 468 (492)
Q Consensus 406 ~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l---~~ai~~~~~~~~~~~~~~~~a~ 468 (492)
+|+|+|+++. ||..|++. ++.+|+++++.|++++ .+++..+.++++.+.++++++.
T Consensus 286 ~G~PvI~~~~--~~~~e~i~-----~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 344 (353)
T cd03811 286 LGTPVVATDC--PGPREILE-----DGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAAR 344 (353)
T ss_pred hCCCEEEcCC--CChHHHhc-----CCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 9999999999 99999987 4567999999999988 6777788888888888887554
No 64
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.6e-31 Score=264.06 Aligned_cols=327 Identities=13% Similarity=0.029 Sum_probs=214.0
Q ss_pred CcHHHHHhHHHHHHHHCCC-eEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCCCC
Q 011163 25 GSLASYVTGLSGALQRKGH-LVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSS 103 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~ 103 (492)
+|.+..+..++..|+++|| +|+|++........+ .. ..+|+++++++. +.
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~----~~----------------------~~~~v~v~r~~~---~~ 65 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA----LL----------------------NHPSIHIHLMVQ---PR 65 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH----Hh----------------------cCCcEEEEECCC---cc
Confidence 7889999999999999986 799998643321111 00 134678887752 10
Q ss_pred CccCCCCCCCCC---hhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchh---hhHHHHHHHHHhhcCCCCCcEEEEecCCC
Q 011163 104 FFNRESVYGYSD---DFERFTYFSRASLDYIVKSRKQPDVLHIHNWET---AIVGPLFWDIFVKQGLEGTRILLSCHNLN 177 (492)
Q Consensus 104 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~---~~~~~~~~~~~~~~~~~~~~~v~t~H~~~ 177 (492)
.... ...... ......++..++...+.....+|||||+|+... .+.+.++++ +.+.|+|+|+|+..
T Consensus 66 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~------~~~~p~v~~~h~~~ 137 (371)
T PLN02275 66 LLQR--LPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW------LRRAKFVIDWHNFG 137 (371)
T ss_pred cccc--cccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH------HhCCCEEEEcCCcc
Confidence 1100 000111 001111122333333222257999999997332 222222322 25789999999853
Q ss_pred CCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCee
Q 011163 178 SLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLL 257 (492)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (492)
+. ....+..... .... ....+++...+.+|.+|++|+.+.+.+... .+ .++.
T Consensus 138 ~~-------~~~~~~~~~~-----~~~~----~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~-~g-----------~~i~ 189 (371)
T PLN02275 138 YT-------LLALSLGRSH-----PLVR----LYRWYERHYGKMADGHLCVTKAMQHELDQN-WG-----------IRAT 189 (371)
T ss_pred HH-------HHhcccCCCC-----HHHH----HHHHHHHHHHhhCCEEEECCHHHHHHHHHh-cC-----------CCeE
Confidence 11 0000110000 0000 012346677889999999999998876542 22 1278
Q ss_pred eecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHh----
Q 011163 258 VAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK---- 333 (492)
Q Consensus 258 vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~---- 333 (492)
+||||. .+.|.|... . .. ...+ ...+++++||+.+.||++.|++|+..+.
T Consensus 190 vi~n~~-~~~f~~~~~------------------~----~~--~~~~-~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~ 243 (371)
T PLN02275 190 VLYDQP-PEFFRPASL------------------E----IR--LRPN-RPALVVSSTSWTPDEDFGILLEAAVMYDRRVA 243 (371)
T ss_pred EECCCC-HHHcCcCCc------------------h----hc--ccCC-CcEEEEEeCceeccCCHHHHHHHHHHHHhhhh
Confidence 999995 466665410 0 00 1111 2356778999999999999999998773
Q ss_pred ---------------HcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEec-cCHHHHHHHHhcCCEEEECC--C-CC
Q 011163 334 ---------------MRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS-YDDALLHLIFSGSDIILCHS--F-HD 394 (492)
Q Consensus 334 ---------------~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~adi~v~pS--~-~E 394 (492)
..+++|+|+|+|+ ..+++++++++++.+++.|+++ .+.++++.+|++||++|+|+ . .|
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~l~ivG~G~---~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e 320 (371)
T PLN02275 244 ARLNESDSASGKQSLYPRLLFIITGKGP---QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGL 320 (371)
T ss_pred hccccccccccccccCCCeEEEEEeCCC---CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccc
Confidence 1369999999885 3567888888776567888775 57888999999999999864 2 48
Q ss_pred CCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHh
Q 011163 395 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 454 (492)
Q Consensus 395 ~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~ 454 (492)
+||++++||||||+|+|+++. ||.+|+|+ ++.+|++++ |+++|+++|.+++
T Consensus 321 ~~p~~llEAmA~G~PVVa~~~--gg~~eiv~-----~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 321 DLPMKVVDMFGCGLPVCAVSY--SCIGELVK-----DGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred cccHHHHHHHHCCCCEEEecC--CChHHHcc-----CCCCeEEEC--CHHHHHHHHHHhC
Confidence 999999999999999999999 99999997 467899997 6899999998764
No 65
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=3.4e-31 Score=267.31 Aligned_cols=219 Identities=12% Similarity=0.082 Sum_probs=179.5
Q ss_pred hhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHH
Q 011163 214 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 293 (492)
Q Consensus 214 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
+.+..++.+|.++++|+..++.+... ++ ...+++.+++||++...+.+..
T Consensus 176 ~~~~~~~~~d~ii~~S~~~~~~l~~~-~~--------~~~~ki~vi~~gv~~~~~~~~~--------------------- 225 (407)
T cd04946 176 LRRYLLSSLDAVFPCSEQGRNYLQKR-YP--------AYKEKIKVSYLGVSDPGIISKP--------------------- 225 (407)
T ss_pred HHHHHHhcCCEEEECCHHHHHHHHHH-CC--------CccccEEEEECCcccccccCCC---------------------
Confidence 44556789999999999988776543 22 1357889999999976443320
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc----CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEE
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR----GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIF 368 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~----~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~ 368 (492)
...+.+.++++||+.+.||++.+++|+.++.+. +++++++|+|+ ..+.++++++.++. ++|.|
T Consensus 226 ---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~---~~~~l~~~~~~~~~~~~V~f 293 (407)
T cd04946 226 ---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP---LEDTLKELAESKPENISVNF 293 (407)
T ss_pred ---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch---HHHHHHHHHHhcCCCceEEE
Confidence 012347899999999999999999999999753 46778889663 45677777765543 68999
Q ss_pred EeccCHHHHHHHHhc--CCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCC-CHHH
Q 011163 369 VDSYDDALLHLIFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTF-GNIS 445 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~--adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~-~~~~ 445 (492)
+|.++.+++..+|+. +|++++||.+||+|++++||||||+|||+|++ ||++|+|. ++.+|+++++. |+++
T Consensus 294 ~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v--gg~~e~i~-----~~~~G~l~~~~~~~~~ 366 (407)
T cd04946 294 TGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV--GGTPEIVD-----NGGNGLLLSKDPTPNE 366 (407)
T ss_pred ecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC--CCcHHHhc-----CCCcEEEeCCCCCHHH
Confidence 998888888888865 78999999999999999999999999999999 99999997 45679999864 8899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh---ccCCchhhHHHH
Q 011163 446 LSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 481 (492)
Q Consensus 446 l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 481 (492)
++++|..+++||+.+++|+++|++ ++|||+...+++
T Consensus 367 la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 367 LVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 999999999999999999999987 799999998874
No 66
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=2.1e-31 Score=264.65 Aligned_cols=204 Identities=14% Similarity=0.044 Sum_probs=168.0
Q ss_pred hhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHH
Q 011163 214 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 293 (492)
Q Consensus 214 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
+.+..++++|.++++|+..++.+... ...+..+|+||+|.+.|.+..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~------------~~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKY------------YGRDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHH------------hCCCcEEECCCCCHhhcCcCC---------------------
Confidence 45566789999999999988877531 134568999999987775531
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccC
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD 373 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 373 (492)
.....++++||+.+.||++.+++|++++. ++|+|+|+|++ .+.+++ .. .++|.|+|..+
T Consensus 193 -----------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~---~~~l~~---~~-~~~V~~~g~~~ 251 (351)
T cd03804 193 -----------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPE---LDRLRA---KA-GPNVTFLGRVS 251 (351)
T ss_pred -----------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChh---HHHHHh---hc-CCCEEEecCCC
Confidence 11246889999999999999999998874 89999997742 334444 33 37999999999
Q ss_pred HHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHH
Q 011163 374 DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 453 (492)
Q Consensus 374 ~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~ 453 (492)
.+++..+|+.||++++||. |+||++++|||+||+|+|+++. ||..|++. ++.+|++++++|+++++++|..+
T Consensus 252 ~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~--~~~~e~i~-----~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 252 DEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGK--GGALETVI-----DGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCC--CCCcceee-----CCCCEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999 99999987 35679999999999999999999
Q ss_pred hcCH-HHHHHHHHHHHhccCCchhhHHHH
Q 011163 454 KNNP-LSWKRKIKDAMLQDFSWDADCNDI 481 (492)
Q Consensus 454 ~~~~-~~~~~~~~~a~~~~fsw~~~a~~~ 481 (492)
++|+ ...+++++++ ++|+|++..+++
T Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 350 (351)
T cd03804 324 EKNEDFDPQAIRAHA--ERFSESRFREKI 350 (351)
T ss_pred HhCcccCHHHHHHHH--HhcCHHHHHHHh
Confidence 9988 4555665554 569999998873
No 67
>PHA01630 putative group 1 glycosyl transferase
Probab=99.97 E-value=1.5e-30 Score=253.25 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=159.2
Q ss_pred hHHH-HhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHH
Q 011163 215 LKGG-VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 293 (492)
Q Consensus 215 ~~~~-~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
+... .+.+|.++++|+...+.+...... .++++.+||||+|.+.|.|...
T Consensus 87 ~~~~~~~~ad~ii~~S~~~~~~l~~~g~~---------~~~~i~vIpNGVd~~~f~~~~~-------------------- 137 (331)
T PHA01630 87 LYFFRNQPVDEIVVPSQWSKNAFYTSGLK---------IPQPIYVIPHNLNPRMFEYKPK-------------------- 137 (331)
T ss_pred HHHHhhccCCEEEECCHHHHHHHHHcCCC---------CCCCEEEECCCCCHHHcCCCcc--------------------
Confidence 3344 567999999999988876542111 1468999999999887766410
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEec
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS 371 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~ 371 (492)
. .....++++.|++.++||++.|++|++++.+ .+++|+|+|++.. +..+. .+ .. +.+.
T Consensus 138 --------~-~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~---~~~l~----~~--~~--~~~~ 197 (331)
T PHA01630 138 --------E-KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML---DPRLF----GL--NG--VKTP 197 (331)
T ss_pred --------c-cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc---chhhc----cc--cc--eecc
Confidence 0 0123567778899999999999999999975 3789999995421 11111 11 11 2345
Q ss_pred cCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeee--------------
Q 011163 372 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFI-------------- 437 (492)
Q Consensus 372 ~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~-------------- 437 (492)
.+.+++..+|+.||++|+||.+|+||++++||||||+|||+|+. ||+.|+|.+ +.||++
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~--gg~~E~i~~-----~~ng~lv~~~~~~~~~~~~~ 270 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK--GAWSEWVLS-----NLDVYWIKSGRKPKLWYTNP 270 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC--CCchhhccC-----CCceEEeeecccccccccCC
Confidence 67788899999999999999999999999999999999999999 999999874 344444
Q ss_pred ------ecCCCHHHHHHHHHHHhcCH--HHHH-HHHHHHH--hccCCchhhHHHHHHHHHHH
Q 011163 438 ------SSTFGNISLSQALEEIKNNP--LSWK-RKIKDAM--LQDFSWDADCNDIHISAYTA 488 (492)
Q Consensus 438 ------~~~~~~~~l~~ai~~~~~~~--~~~~-~~~~~a~--~~~fsw~~~a~~~~~~~Y~~ 488 (492)
+++ |.+++++++.+++.|+ +.++ .+..++. .++|||+++++++ +++|++
T Consensus 271 ~~~G~~v~~-~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~-~~l~~~ 330 (331)
T PHA01630 271 IHVGYFLDP-DIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMW-EKILEK 330 (331)
T ss_pred cccccccCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHhc
Confidence 444 5667778887777763 4444 4444443 3899999999994 999975
No 68
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.97 E-value=7.4e-32 Score=251.35 Aligned_cols=232 Identities=29% Similarity=0.499 Sum_probs=168.0
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeee------eecCCeeeEEEE
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECY------SYFNGQLHANKI 83 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 83 (492)
||++|+.|+.|+.++||++.++..|+++|+++||+|.|++|.|+...... .....+ .+++ +.++. ...+.+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~-~~~~~~-~~~~~~~~~~v~~~~-~~~~~v 77 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEY-FQLEPV-RRLSVPFGGPVPVGV-WYEVRV 77 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHC-TTEEEE-EEES-STTCEEEEE-----EEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhh-hcceEE-EEecccccccccccc-ceEEEE
Confidence 79999999999999999999999999999999999999999986543321 111111 1111 11222 256788
Q ss_pred EEEEECCeEEEEEccCCCCCCccCCCCCC-----CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHH
Q 011163 84 WIGVVSGIGVTFIQPLHYSSFFNRESVYG-----YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDI 158 (492)
Q Consensus 84 ~~~~~~gv~v~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~ 158 (492)
++...+|+++++++. +.++.+..+|+ |.++..|+.+|++++++++++++.+|||||||+|+++++|.+++..
T Consensus 78 ~~~~~~~v~v~~i~~---~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~ 154 (245)
T PF08323_consen 78 YRYPVDGVPVYFIDN---PEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKER 154 (245)
T ss_dssp EEEEETTEEEEEEES---HHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHC
T ss_pred EEEEcCCccEEEecC---hhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccc
Confidence 888899999999983 55777777884 5889999999999999999887789999999999999999998764
Q ss_pred Hhh-cCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhh
Q 011163 159 FVK-QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 237 (492)
Q Consensus 159 ~~~-~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 237 (492)
... ....++|+|+|+|++.++|.++.+.+..+++++..+...+..+++ ..+++++.++..||.|++||+.+++++.
T Consensus 155 ~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~---~~in~lk~gi~~AD~v~TVS~~Ya~Ei~ 231 (245)
T PF08323_consen 155 YQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFY---GQINFLKAGIVYADKVTTVSPTYAREIQ 231 (245)
T ss_dssp CSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEET---TEEEHHHHHHHHSSEEEESSHHHHHHTT
T ss_pred cccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccc---cccCHHHHHHHhcCEeeeCCHHHHHHHh
Confidence 321 112369999999999999999877777778876544334444444 3689999999999999999999999999
Q ss_pred hcccCCCccHHHh
Q 011163 238 IRSLSHGLESTLA 250 (492)
Q Consensus 238 ~~~~~~~l~~~~~ 250 (492)
+..+|.||++++.
T Consensus 232 ~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 232 TPEFGEGLEGLLR 244 (245)
T ss_dssp SHHHHTT-HHHHH
T ss_pred CcccCCChHHHhc
Confidence 8887878877654
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=2.5e-28 Score=234.71 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=161.1
Q ss_pred HHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHH
Q 011163 217 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQ 296 (492)
Q Consensus 217 ~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (492)
..+...+.+|++|+..++.+... |. +.. .+|+||+|.+.|.|..+ ...+++
T Consensus 88 ~~m~~~~~vIavS~~t~~~L~~~--G~---------~~~-i~I~~GVD~~~f~p~~~-----------------~~~~~r 138 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAENLQEV--GL---------QVD-LPVFHGINFKIVENAEK-----------------LVPQLK 138 (335)
T ss_pred HHHhcCCEEEeCCHHHHHHHHHh--CC---------CCc-eeeeCCCChhhcCccch-----------------hhHHHH
Confidence 44555678999999998877642 21 122 35889999988877520 123456
Q ss_pred HHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEe
Q 011163 297 QQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD 370 (492)
Q Consensus 297 ~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~ 370 (492)
++++.... +.++++++||+.++||++.|++|++++.+. +++|+++|.+ .++++ .+ .++|+|++
T Consensus 139 ~~~~~~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~-------~~~~l--~l-~~~V~f~g 207 (335)
T PHA01633 139 QKLDKDFP-DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK-------QFTQL--EV-PANVHFVA 207 (335)
T ss_pred HHhCcCCC-CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH-------HHHHc--CC-CCcEEEEe
Confidence 66665422 347889999999999999999999998753 3578887721 12221 12 37899886
Q ss_pred cc---CHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccc--------c-----ccccee
Q 011163 371 SY---DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--------H-----ESTRFS 434 (492)
Q Consensus 371 ~~---~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~--------~-----~~~g~~ 434 (492)
.+ +.+++..+|++||+||+||.+||||++++||||||+|||+++. ||++|++..+ . .+...+
T Consensus 208 ~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~--~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 208 EFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLM--PPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred cCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccC--CCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 33 5678889999999999999999999999999999999999999 9999974410 0 012335
Q ss_pred eeeecCCCHHHHHHHHHHHhc--CHHHHHHHHHHHH--hccCCchhhHHHH
Q 011163 435 RFISSTFGNISLSQALEEIKN--NPLSWKRKIKDAM--LQDFSWDADCNDI 481 (492)
Q Consensus 435 G~~~~~~~~~~l~~ai~~~~~--~~~~~~~~~~~a~--~~~fsw~~~a~~~ 481 (492)
||.+++.|+++|+++|.++++ +++.+ +.+++ .++|+|+++++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~~f~~~~~~~~~ 333 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREER---SMKLKELAKKYDIRNLYTRF 333 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhh---hHHHHHHHHhcCHHHHHHHh
Confidence 889999999999999999854 33333 33333 3889999999984
No 70
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=3e-29 Score=251.19 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=171.6
Q ss_pred HHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHH
Q 011163 218 GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 297 (492)
Q Consensus 218 ~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (492)
.+..+|.++++|+..++.+... ++ ...++.+||||++.+.+.+..
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~-~~---------~~~~v~~ip~g~~~~~~~~~~------------------------- 198 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQ-FG---------NYNPIYTIPVGSIDPLKLPAQ------------------------- 198 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHH-hC---------CCCceEEEcccccChhhcccc-------------------------
Confidence 3577999999999887776542 21 234589999999976554420
Q ss_pred HhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCH
Q 011163 298 QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDD 374 (492)
Q Consensus 298 ~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 374 (492)
........++++||+.++||++.+++|+.++.+ .+++|+|+|.|+. ...++++.+.++. ++|.+.| +.+
T Consensus 199 ----~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g-~~~ 270 (372)
T cd04949 199 ----FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE---EEKLKELIEELGLEDYVFLKG-YTR 270 (372)
T ss_pred ----hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch---HHHHHHHHHHcCCcceEEEcC-CCC
Confidence 001123578999999999999999999999875 3799999997743 4455666665543 6788776 433
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCC-cccccccccccccceeeeeecCCCHHHHHHHHHHH
Q 011163 375 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDI-EFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 453 (492)
Q Consensus 375 ~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~g-g~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~ 453 (492)
++..+|+.||++++||.+|+||++++|||+||+|+|+++. | |..|+|. ++.+|+++++.|+++|+++|..+
T Consensus 271 -~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~--~~g~~~~v~-----~~~~G~lv~~~d~~~la~~i~~l 342 (372)
T cd04949 271 -DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDV--NYGPSEIIE-----DGENGYLVPKGDIEALAEAIIEL 342 (372)
T ss_pred -CHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecC--CCCcHHHcc-----cCCCceEeCCCcHHHHHHHHHHH
Confidence 4668999999999999999999999999999999999998 6 7889887 46789999999999999999999
Q ss_pred hcCHHHHHHHHHHHHh--ccCCchhhHHH
Q 011163 454 KNNPLSWKRKIKDAML--QDFSWDADCND 480 (492)
Q Consensus 454 ~~~~~~~~~~~~~a~~--~~fsw~~~a~~ 480 (492)
++|++.+++++++++. ++|||+.++++
T Consensus 343 l~~~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 343 LNDPKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred HcCHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999876 78999999876
No 71
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=3.8e-27 Score=234.52 Aligned_cols=340 Identities=12% Similarity=-0.000 Sum_probs=220.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++++. ..||......+|+++|.++||+|.+++......... . ..
T Consensus 2 ~~i~i~~~------g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~----~-----------------------~~ 48 (357)
T PRK00726 2 KKILLAGG------GTGGHVFPALALAEELKKRGWEVLYLGTARGMEARL----V-----------------------PK 48 (357)
T ss_pred cEEEEEcC------cchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc----c-----------------------cc
Confidence 89988876 358999999999999999999999999753210000 0 01
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
.|++++.++.. .. ..............+......+.++++ ..+|||||+|.+.+++.+.++++ ..++|
T Consensus 49 ~g~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~~~~~~~~~ik--~~~pDvv~~~~~~~~~~~~~~~~------~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSG---GL-RRKGSLANLKAPFKLLKGVLQARKILK--RFKPDVVVGFGGYVSGPGGLAAR------LLGIP 116 (357)
T ss_pred CCCcEEEEecc---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCcchhHHHHHHH------HcCCC
Confidence 36677776521 00 000000000001111122233333343 36899999998766555444333 26889
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+|++.|+... . ...+...+.+|.++++++.... .
T Consensus 117 ~v~~~~~~~~-----~----------------------------~~~r~~~~~~d~ii~~~~~~~~---~---------- 150 (357)
T PRK00726 117 LVIHEQNAVP-----G----------------------------LANKLLARFAKKVATAFPGAFP---E---------- 150 (357)
T ss_pred EEEEcCCCCc-----c----------------------------HHHHHHHHHhchheECchhhhh---c----------
Confidence 9987764210 0 1123345678999888763311 1
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHH-H
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK-A 327 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li-~ 327 (492)
.+..++.+|+||+|.+.+.+.. .+++++++. +.++++++|+....|+...++ +
T Consensus 151 --~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~~--~~~~i~~~gg~~~~~~~~~~l~~ 204 (357)
T PRK00726 151 --FFKPKAVVTGNPVREEILALAA----------------------PPARLAGRE--GKPTLLVVGGSQGARVLNEAVPE 204 (357)
T ss_pred --cCCCCEEEECCCCChHhhcccc----------------------hhhhccCCC--CCeEEEEECCcHhHHHHHHHHHH
Confidence 1468999999999976544320 112445543 245778888888888765555 9
Q ss_pred HHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcC
Q 011163 328 VVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 407 (492)
Q Consensus 328 a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G 407 (492)
|+.++.+....++++|+|. . +.+.+..+ ++ -+|.+.+.. ++...+|+.||+++++|. +.+++|||+||
T Consensus 205 a~~~~~~~~~~~~~~G~g~---~-~~~~~~~~-~~-~~v~~~g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g 272 (357)
T PRK00726 205 ALALLPEALQVIHQTGKGD---L-EEVRAAYA-AG-INAEVVPFI--DDMAAAYAAADLVICRAG----ASTVAELAAAG 272 (357)
T ss_pred HHHHhhhCcEEEEEcCCCc---H-HHHHHHhh-cC-CcEEEeehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhC
Confidence 9988865334567788663 2 33333334 43 247777555 456799999999999873 68899999999
Q ss_pred CceEEEecCCCccc--------ccccccccccceeeeeecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCch
Q 011163 408 AAPIAVTSSDIEFR--------HFAEFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 475 (492)
Q Consensus 408 ~PvV~~~~~~gg~~--------e~v~~~~~~~g~~G~~~~~~~--~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~ 475 (492)
+|+|++.. ++.. +.+. ++++|+++++.| +++|+++|+.+++|++.+++|++++++ +.++-+
T Consensus 273 ~Pvv~~~~--~~~~~~~~~~~~~~i~-----~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 345 (357)
T PRK00726 273 LPAILVPL--PHAADDHQTANARALV-----DAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAE 345 (357)
T ss_pred CCEEEecC--CCCCcCcHHHHHHHHH-----HCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHH
Confidence 99999876 4322 3333 245789998887 999999999999999999999999876 678888
Q ss_pred hhHHHHHHHH
Q 011163 476 ADCNDIHISA 485 (492)
Q Consensus 476 ~~a~~~~~~~ 485 (492)
.+++++ .++
T Consensus 346 ~~~~~~-~~~ 354 (357)
T PRK00726 346 RLADLI-EEL 354 (357)
T ss_pred HHHHHH-HHH
Confidence 887774 543
No 72
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.96 E-value=4.8e-27 Score=233.22 Aligned_cols=334 Identities=13% Similarity=0.019 Sum_probs=215.1
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++.+. ..||-...+.+|+++|.++||+|++++......... . ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~----~-----------------------~~~ 47 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEARL----V-----------------------PKA 47 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc----c-----------------------ccc
Confidence 4666554 358899999999999999999999998754311100 0 113
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcE
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 169 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (492)
|++++.++.. .+ .+...+........+......+.++++ +.+||+||+|....++.+.++++ ..++|+
T Consensus 48 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~~~~~a~------~~~~p~ 115 (350)
T cd03785 48 GIPLHTIPVG---GL-RRKGSLKKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGPVGLAAK------LLGIPL 115 (350)
T ss_pred CCceEEEEec---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchHHHHHHH------HhCCCE
Confidence 5667666421 00 011111000011111222233444444 36899999998654444333322 257899
Q ss_pred EEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHH
Q 011163 170 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 249 (492)
Q Consensus 170 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~ 249 (492)
+++.|+... . ...+.....+|.|+++|+...+. .
T Consensus 116 v~~~~~~~~------~---------------------------~~~~~~~~~~~~vi~~s~~~~~~-----~-------- 149 (350)
T cd03785 116 VIHEQNAVP------G---------------------------LANRLLARFADRVALSFPETAKY-----F-------- 149 (350)
T ss_pred EEEcCCCCc------c---------------------------HHHHHHHHhhCEEEEcchhhhhc-----C--------
Confidence 876553210 0 11223345689999999876543 1
Q ss_pred hhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHH
Q 011163 250 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAV 328 (492)
Q Consensus 250 ~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a 328 (492)
++.++.+|+||+|.+.+.+. . .+++++++.+ .+++++.|+....|+... +++|
T Consensus 150 --~~~~~~~i~n~v~~~~~~~~-------------------~---~~~~~~~~~~--~~~i~~~~g~~~~~~~~~~l~~a 203 (350)
T cd03785 150 --PKDKAVVTGNPVREEILALD-------------------R---ERARLGLRPG--KPTLLVFGGSQGARAINEAVPEA 203 (350)
T ss_pred --CCCcEEEECCCCchHHhhhh-------------------h---hHHhcCCCCC--CeEEEEECCcHhHHHHHHHHHHH
Confidence 35789999999997655432 1 1566777643 356777777666777654 5688
Q ss_pred HHHHhHcCcEE-EEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcC
Q 011163 329 VRGAKMRGIQF-VFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 407 (492)
Q Consensus 329 ~~~l~~~~~~l-vivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G 407 (492)
++.+.+.++++ +++|+| ..+.+++..+++ .++|.+.+.. ++...+|+.||++|.+|. +++++|||++|
T Consensus 204 ~~~l~~~~~~~~~i~G~g----~~~~l~~~~~~~-~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G 272 (350)
T cd03785 204 LAELLRKRLQVIHQTGKG----DLEEVKKAYEEL-GVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALG 272 (350)
T ss_pred HHHhhccCeEEEEEcCCc----cHHHHHHHHhcc-CCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhC
Confidence 88887556664 466754 235566666665 4789988665 456789999999998773 68899999999
Q ss_pred CceEEEecCCCcc--------cccccccccccceeeeeecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCch
Q 011163 408 AAPIAVTSSDIEF--------RHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 475 (492)
Q Consensus 408 ~PvV~~~~~~gg~--------~e~v~~~~~~~g~~G~~~~~~--~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~ 475 (492)
+|+|+++. ++. .+.+. ++.+|+++++. |+++|+++|+.+++|++.+++|+++++. +.+.-+
T Consensus 273 ~Pvv~~~~--~~~~~~~~~~~~~~l~-----~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 345 (350)
T cd03785 273 LPAILIPL--PYAADDHQTANARALV-----KAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAE 345 (350)
T ss_pred CCEEEeec--CCCCCCcHHHhHHHHH-----hCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 99999886 441 23333 24578999887 8999999999999999999999998875 344444
Q ss_pred hhH
Q 011163 476 ADC 478 (492)
Q Consensus 476 ~~a 478 (492)
+++
T Consensus 346 ~i~ 348 (350)
T cd03785 346 RIA 348 (350)
T ss_pred HHH
Confidence 443
No 73
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=1.2e-27 Score=243.74 Aligned_cols=312 Identities=9% Similarity=0.043 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccc---
Q 011163 120 FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPAR--- 196 (492)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~--- 196 (492)
+....+...+.+.+.-...|+||+|+++..++|.++++. ..+.|+++++|...+. .+.+..+......
T Consensus 114 Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp~~lr~~-----~~~~~i~~f~HipfP~----~e~~~~lp~~~~ll~~ 184 (460)
T cd03788 114 YVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLPQMLRER-----GPDARIGFFLHIPFPS----SEIFRCLPWREELLRG 184 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHHHHHHhh-----CCCCeEEEEEeCCCCC----hHHHhhCCChHHHHHH
Confidence 334445555555543346799999999988888887543 2568999999964211 1111111100000
Q ss_pred cCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCccc
Q 011163 197 LHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFL 276 (492)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~ 276 (492)
+...+.+-+. .....+..+..++.++..+......+ ...| ...++.+||||||.+.|.+...
T Consensus 185 ~l~~D~igF~----t~~~~~~Fl~~~~~~l~~~~~~~~~i--~~~g---------~~~~i~vip~GID~~~f~~~~~--- 246 (460)
T cd03788 185 LLGADLIGFQ----TERYARNFLSCCSRLLGLEVTDDGGV--EYGG---------RRVRVGAFPIGIDPDAFRKLAA--- 246 (460)
T ss_pred HhcCCEEEEC----CHHHHHHHHHHHHHHcCCcccCCceE--EECC---------EEEEEEEEeCeEcHHHHHHHhc---
Confidence 0000001010 01222333344444444443321111 1111 2457899999999988865421
Q ss_pred ccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--C----cEEEEEecCC--C-
Q 011163 277 TENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--G----IQFVFTGTNK--L- 347 (492)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~----~~lvivG~g~--~- 347 (492)
.+..+..+++..+... +.++|+++||+++.||++.+++|++++.+. + ++|+++|.+. +
T Consensus 247 -----------~~~~~~~~~~~~~~~~--~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~ 313 (460)
T cd03788 247 -----------SPEVQERAAELRERLG--GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDV 313 (460)
T ss_pred -----------CchhHHHHHHHHHhcC--CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCc
Confidence 1112333333344433 347899999999999999999999988753 2 6788887431 1
Q ss_pred ---hhHHHHHHHHHHHhCC-------CeEEEEe-ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCc----eEE
Q 011163 348 ---PSASRALVSFQEELKD-------GIVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA----PIA 412 (492)
Q Consensus 348 ---~~~~~~l~~~~~~~~~-------~~v~~~~-~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~P----vV~ 412 (492)
..+.+++++++++++. ..|++++ ..+.+++..+|+.||++++||..||||++++||||||+| +|+
T Consensus 314 ~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~ 393 (460)
T cd03788 314 PEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL 393 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE
Confidence 2344556666554321 2355554 558888999999999999999999999999999999999 999
Q ss_pred EecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 413 VTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 413 ~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~-~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
|+. +|..+.. .+|++++|.|+++++++|..+++++ +.+++++++++. .+|||+..++++
T Consensus 394 S~~--~G~~~~~--------~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~ 455 (460)
T cd03788 394 SEF--AGAAEEL--------SGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSF 455 (460)
T ss_pred ecc--ccchhhc--------CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 988 7877752 2479999999999999999999855 566666666655 789999999884
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=1.6e-26 Score=233.68 Aligned_cols=307 Identities=10% Similarity=0.052 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCc-hhhhhcCCCccccC
Q 011163 120 FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHP-DKLALCGLDPARLH 198 (492)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~-~~~~~~~~~~~~~~ 198 (492)
+....+.+.+.+.+.-..-|+|.+|+++-.++|.++++. ....++.+.+|-.. |. +.+.. +++
T Consensus 110 Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlHipf-----P~~e~f~~--lp~---- 173 (456)
T TIGR02400 110 YRRVNRLFAEALAPLLQPGDIVWVHDYHLMLLPAMLREL-----GVQNKIGFFLHIPF-----PSSEIYRT--LPW---- 173 (456)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecchhhHHHHHHHhh-----CCCCeEEEEEeCCC-----CChHHHhh--CCc----
Confidence 333445555555543334589999999999999988654 25678999999532 22 11111 110
Q ss_pred CCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcc---cCCCcc--HH-HhhhcCCeeeecCCCCCCCcCCCC
Q 011163 199 RPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS---LSHGLE--ST-LAIHQDKLLVAPCGFDSSTWDPSN 272 (492)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~---~~~~l~--~~-~~~~~~~~~vI~nGvd~~~f~p~~ 272 (492)
...+-.++-.||.|..-+..+++...... .+.... .+ +.-...++.++|||||++.|.+..
T Consensus 174 -------------r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~ 240 (456)
T TIGR02400 174 -------------RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQA 240 (456)
T ss_pred -------------HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHh
Confidence 12334556667888777777665543310 010000 00 001345688999999999886642
Q ss_pred CcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecC-
Q 011163 273 DKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTN- 345 (492)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g- 345 (492)
.. .........+|++++ +.++|+++||+++.||++.+++|++++.+. ++.|+++|..
T Consensus 241 ~~-----------~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~ 304 (456)
T TIGR02400 241 KK-----------PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPS 304 (456)
T ss_pred cC-----------hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCC
Confidence 10 000112234666663 246889999999999999999999998642 3568877621
Q ss_pred -CC----hhHHHHHHHHHHHhCC-----C--eEEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCc---
Q 011163 346 -KL----PSASRALVSFQEELKD-----G--IVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA--- 409 (492)
Q Consensus 346 -~~----~~~~~~l~~~~~~~~~-----~--~v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~P--- 409 (492)
++ ..+.+++++++.+.+. + -++++ +.++.+++..+|++||++++||..||||+|++||||||+|
T Consensus 305 rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g 384 (456)
T TIGR02400 305 RGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDG 384 (456)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCc
Confidence 11 1233344444332221 1 14444 4567888999999999999999999999999999999999
Q ss_pred -eEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 410 -PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 410 -vV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
+|+|+. +|..+.+. +|++++|.|+++++++|.++++ +++.++++.+..++ .+||+..-++++
T Consensus 385 ~vVlS~~--~G~~~~l~--------~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~ 450 (456)
T TIGR02400 385 VLILSEF--AGAAQELN--------GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDF 450 (456)
T ss_pred eEEEeCC--CCChHHhC--------CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 999998 88887763 3799999999999999999998 45556666555544 679999999884
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.95 E-value=8e-26 Score=224.28 Aligned_cols=323 Identities=13% Similarity=0.079 Sum_probs=200.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++++.+ .||-.....+|+++|.++||+|++++....... . +. ..
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-~----~~----------------------~~ 47 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-R----LV----------------------PK 47 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-c----cc----------------------cc
Confidence 789887753 233333556999999999999999986432110 0 00 01
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
.|++++.++.. .+ ....+.........+......+.++++ ..+||+||+|...+.+.+.++++ ..++|
T Consensus 48 ~g~~~~~i~~~---~~-~~~~~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~~~~~------~~~~p 115 (348)
T TIGR01133 48 AGIEFYFIPVG---GL-RRKGSFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAGLAAK------LLGIP 115 (348)
T ss_pred CCCceEEEecc---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHHHHHH------HcCCC
Confidence 36666666421 00 000000000001111112233344444 37899999997655444333332 25778
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
+|++.|+... ....+...+.+|.++++|+...+.+
T Consensus 116 ~v~~~~~~~~---------------------------------~~~~~~~~~~~d~ii~~~~~~~~~~------------ 150 (348)
T TIGR01133 116 LFHHEQNAVP---------------------------------GLTNKLLSRFAKKVLISFPGAKDHF------------ 150 (348)
T ss_pred EEEECCCCCc---------------------------------cHHHHHHHHHhCeeEECchhHhhcC------------
Confidence 8754332110 0112344567999999998654321
Q ss_pred HhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHH-HHH
Q 011163 249 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKA 327 (492)
Q Consensus 249 ~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~ 327 (492)
+..+|+||+|...+.+.. . ++++++++ +.++++++|+....|++.. +++
T Consensus 151 ------~~~~i~n~v~~~~~~~~~------------------~----~~~~~~~~--~~~~i~~~gg~~~~~~~~~~l~~ 200 (348)
T TIGR01133 151 ------EAVLVGNPVRQEIRSLPV------------------P----RERFGLRE--GKPTILVLGGSQGAKILNELVPK 200 (348)
T ss_pred ------CceEEcCCcCHHHhcccc------------------h----hhhcCCCC--CCeEEEEECCchhHHHHHHHHHH
Confidence 237899999865443220 1 23466664 3467888998888888654 568
Q ss_pred HHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeE-EEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhc
Q 011163 328 VVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIV-IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 406 (492)
Q Consensus 328 a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~ 406 (492)
|++.+.+.++++++++ |+. + .+.+++.+++++..++ .|. .. +...+|+.||++|.+| + +.+++|||++
T Consensus 201 a~~~l~~~~~~~~~~~-g~~-~-~~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~ 269 (348)
T TIGR01133 201 ALAKLAEKGIQIVHQT-GKN-D-LEKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA---G-ASTVAELAAA 269 (348)
T ss_pred HHHHHhhcCcEEEEEC-Ccc-h-HHHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC---C-hhHHHHHHHc
Confidence 8888876567775544 321 2 2567776666543233 333 22 5578999999999876 2 6899999999
Q ss_pred CCceEEEecCCCccc-------ccccccccccceeeeeecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 011163 407 GAAPIAVTSSDIEFR-------HFAEFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML 469 (492)
Q Consensus 407 G~PvV~~~~~~gg~~-------e~v~~~~~~~g~~G~~~~~~~--~~~l~~ai~~~~~~~~~~~~~~~~a~~ 469 (492)
|+|+|+++. +|.. +++. ++.+|++++++| +++|+++|+.+++|++.+++|+++++.
T Consensus 270 g~Pvv~~~~--~~~~~~~~~~~~~i~-----~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 270 GVPAILIPY--PYAADDQYYNAKFLE-----DLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred CCCEEEeeC--CCCccchhhHHHHHH-----HCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 999999987 4322 3443 356789998876 999999999999999999999998864
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=3.3e-25 Score=222.40 Aligned_cols=366 Identities=10% Similarity=0.040 Sum_probs=225.4
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
+.|||++++..+ .+|-......|+++|.++||+|.++++......+. +..+.... |... +.
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~----~~~~~~~~--y~~~----~~---- 63 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPV----ITEITKYL--YLKS----YT---- 63 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchH----HHHHHHHH--HHHH----HH----
Confidence 458999999853 25999999999999999999988887765422110 00000000 0000 00
Q ss_pred EECCeEEEEEccCCCCCCcc-CCCCCCCCChhHH-HHHH-HHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcC
Q 011163 87 VVSGIGVTFIQPLHYSSFFN-RESVYGYSDDFER-FTYF-SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQG 163 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~ 163 (492)
. .-.++.+ ++. ....+ ...... +..+ ...+.+++++ .+||+||+|..... ++. +++ .+
T Consensus 64 -~-~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~-~~~-~~~----~~ 124 (380)
T PRK13609 64 -I-GKELYRL-------FYYGVEKIY--DKKIFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIA-VPE-LKK----QT 124 (380)
T ss_pred -H-hHHHHHH-------HHhccCccc--chHHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHH-HHH-HHH----hc
Confidence 0 0000000 000 00000 000111 1111 2444455543 78999999864332 222 222 12
Q ss_pred CCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCC
Q 011163 164 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 243 (492)
Q Consensus 164 ~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 243 (492)
..++|++.++++... .. +...+.+|.++++|+...+.+.. .|.
T Consensus 125 ~~~ip~~~~~td~~~--------------~~---------------------~~~~~~ad~i~~~s~~~~~~l~~--~gi 167 (380)
T PRK13609 125 GISIPTYNVLTDFCL--------------HK---------------------IWVHREVDRYFVATDHVKKVLVD--IGV 167 (380)
T ss_pred CCCCCeEEEeCCCCC--------------Cc---------------------ccccCCCCEEEECCHHHHHHHHH--cCC
Confidence 357898866654210 00 01124689999999988777654 221
Q ss_pred CccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHH
Q 011163 244 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 323 (492)
Q Consensus 244 ~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~ 323 (492)
+++++.++.|.++. .|.+.. .+..+++++|++++ +..++++.|++...|++.
T Consensus 168 --------~~~ki~v~G~p~~~-~f~~~~------------------~~~~~~~~~~l~~~-~~~il~~~G~~~~~k~~~ 219 (380)
T PRK13609 168 --------PPEQVVETGIPIRS-SFELKI------------------NPDIIYNKYQLCPN-KKILLIMAGAHGVLGNVK 219 (380)
T ss_pred --------ChhHEEEECcccCh-HHcCcC------------------CHHHHHHHcCCCCC-CcEEEEEcCCCCCCcCHH
Confidence 45677777665542 232210 22346788998764 334566778998899999
Q ss_pred HHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 011163 324 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 403 (492)
Q Consensus 324 ~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEA 403 (492)
.+++++.+. .+++++++| |+++.+.+.++++++.++ ++|+++|..+ .+.++|+.||+++. ++.|++++||
T Consensus 220 ~li~~l~~~--~~~~~viv~-G~~~~~~~~l~~~~~~~~-~~v~~~g~~~--~~~~l~~~aD~~v~----~~gg~t~~EA 289 (380)
T PRK13609 220 ELCQSLMSV--PDLQVVVVC-GKNEALKQSLEDLQETNP-DALKVFGYVE--NIDELFRVTSCMIT----KPGGITLSEA 289 (380)
T ss_pred HHHHHHhhC--CCcEEEEEe-CCCHHHHHHHHHHHhcCC-CcEEEEechh--hHHHHHHhccEEEe----CCCchHHHHH
Confidence 999988643 478998886 333345677887777664 6899886553 35689999999984 4669999999
Q ss_pred hhcCCceEEEecCCCccc-ccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHH
Q 011163 404 LKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCND 480 (492)
Q Consensus 404 ma~G~PvV~~~~~~gg~~-e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~ 480 (492)
|+||+|+|+++. .+|.. +.... ...+|+.+...|+++++++|..+++|++.+++|++++.. ..++++.+++.
T Consensus 290 ~a~g~PvI~~~~-~~g~~~~n~~~----~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~ 364 (380)
T PRK13609 290 AALGVPVILYKP-VPGQEKENAMY----FERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDD 364 (380)
T ss_pred HHhCCCEEECCC-CCCcchHHHHH----HHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999763 14421 11110 012345555689999999999999999999999988865 67899999999
Q ss_pred HHHHHHHHHhc
Q 011163 481 IHISAYTAIKN 491 (492)
Q Consensus 481 ~~~~~Y~~l~~ 491 (492)
+ +++++...|
T Consensus 365 i-~~~~~~~~~ 374 (380)
T PRK13609 365 I-LAENHVEPN 374 (380)
T ss_pred H-HHhhhhhhh
Confidence 6 888876554
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.93 E-value=1.4e-23 Score=213.71 Aligned_cols=281 Identities=12% Similarity=0.069 Sum_probs=184.7
Q ss_pred CCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhh
Q 011163 136 KQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNIL 215 (492)
Q Consensus 136 ~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (492)
.+||+||+|... +.|.++... +..++|++++-|.+... .... ..+ ...+.
T Consensus 123 ~~Pd~v~~~~~~--~~~~~l~~~----~~~~ip~vl~~~~~~~~------s~~~-------------~~~-----~~~~~ 172 (425)
T PRK05749 123 WRPKLVIIMETE--LWPNLIAEL----KRRGIPLVLANARLSER------SFKR-------------YQK-----FKRFY 172 (425)
T ss_pred hCCCEEEEEecc--hhHHHHHHH----HHCCCCEEEEeccCChh------hHHH-------------HHH-----HHHHH
Confidence 789999998522 122222221 12689999876643110 0000 000 12345
Q ss_pred HHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHH
Q 011163 216 KGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL 295 (492)
Q Consensus 216 ~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (492)
+..++.+|.|+++|+..++.+.. .|. +++ +.+++|+ +.+.+.+. .....+..+
T Consensus 173 r~~~~~~d~ii~~S~~~~~~l~~--~g~--------~~~-i~vi~n~-~~d~~~~~---------------~~~~~~~~~ 225 (425)
T PRK05749 173 RLLFKNIDLVLAQSEEDAERFLA--LGA--------KNE-VTVTGNL-KFDIEVPP---------------ELAARAATL 225 (425)
T ss_pred HHHHHhCCEEEECCHHHHHHHHH--cCC--------CCC-cEecccc-cccCCCCh---------------hhHHHHHHH
Confidence 67778899999999998887654 221 334 7888884 33322211 011234556
Q ss_pred HHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEecc-
Q 011163 296 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY- 372 (492)
Q Consensus 296 ~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~- 372 (492)
+++++ + +.++++++|+. .|+.+.|++|++++.+ .+++|+|+|+|+ +..+++++++++++...+.+.++.
T Consensus 226 r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~--~r~~~l~~~~~~~gl~~~~~~~~~~ 297 (425)
T PRK05749 226 RRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHP--ERFKEVEELLKKAGLSYVRRSQGEP 297 (425)
T ss_pred HHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCCh--hhHHHHHHHHHhCCCcEEEccCCCC
Confidence 77776 3 23567777775 5778999999999875 479999999774 223567777776543333332211
Q ss_pred -----------CHHHHHHHHhcCCEEEE-CCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 373 -----------DDALLHLIFSGSDIILC-HSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 373 -----------~~~~~~~~~~~adi~v~-pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
..+++..+|+.||++++ +|..|++|++++|||+||+|||+++. .++..|+++.. ..+|+++++
T Consensus 298 ~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~-~~~~~e~~~~~----~~~g~~~~~ 372 (425)
T PRK05749 298 PSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH-TFNFKEIFERL----LQAGAAIQV 372 (425)
T ss_pred CCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC-ccCHHHHHHHH----HHCCCeEEE
Confidence 23467899999999655 67789999999999999999999764 15566665421 134788889
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 441 FGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 441 ~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
.|+++|+++|..+++|++.+++|+++|+. ++. ...++++ .+++++.
T Consensus 373 ~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~--~~~~~~~-~~~l~~~ 420 (425)
T PRK05749 373 EDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN--QGALQRT-LQLLEPY 420 (425)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC--ccHHHHH-HHHHHHh
Confidence 99999999999999999999999999876 222 3556664 6666543
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=1.3e-23 Score=225.13 Aligned_cols=318 Identities=13% Similarity=0.092 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCcccc---
Q 011163 121 TYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARL--- 197 (492)
Q Consensus 121 ~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~--- 197 (492)
...++.+.+.+.+.-..-|+|-+|+++-.++|.++++. ....++.+.+|...+. .+.+..+......+
T Consensus 131 ~~vN~~FA~~i~~~~~~~d~vWvhDYhL~llp~~lR~~-----~~~~~igfFlHiPFPs----~e~fr~lp~r~~il~gl 201 (797)
T PLN03063 131 KKANRMFLDVVKENYEEGDVVWCHDYHLMFLPQYLKEY-----NNKMKVGWFLHTPFPS----SEIYKTLPSRSELLRAV 201 (797)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecchhhhHHHHHHHh-----CCCCcEEEEecCCCCC----HHHHhhCCCHHHHHHHH
Confidence 33344555544443234489999999999999999764 3678999999964321 11111111100000
Q ss_pred CCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccc
Q 011163 198 HRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLT 277 (492)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~ 277 (492)
...+.+-|.. ....+..++.++.++.++... ..+. ..| ...++.+||||||.+.|.+....
T Consensus 202 l~aDligF~t----~~y~r~Fl~~~~r~l~~~~~~-~~i~--~~g---------r~~~I~viP~GID~~~f~~~~~~--- 262 (797)
T PLN03063 202 LTADLIGFHT----YDFARHFLSACTRILGVEGTH-EGVV--DQG---------KVTRVAVFPIGIDPERFINTCEL--- 262 (797)
T ss_pred hcCCEEEeCC----HHHHHHHHHHHHHHhCccccC-CceE--ECC---------eEEEEEEEecccCHHHHHHHhcC---
Confidence 0000011100 122233333444444433211 1111 111 23568899999998877653100
Q ss_pred cccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--C----cEEEEEecC--CChh
Q 011163 278 ENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--G----IQFVFTGTN--KLPS 349 (492)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~----~~lvivG~g--~~~~ 349 (492)
.........+++.++ +.++|+++||+++.||++.+++||+++.+. + +.|+.++.. ++..
T Consensus 263 --------~~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~ 329 (797)
T PLN03063 263 --------PEVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVP 329 (797)
T ss_pred --------hhHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchH
Confidence 000111224455543 246889999999999999999999998742 3 345544411 1111
Q ss_pred HHHHHHHHHHHh----CC--C-----eEEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCc----eEEE
Q 011163 350 ASRALVSFQEEL----KD--G-----IVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA----PIAV 413 (492)
Q Consensus 350 ~~~~l~~~~~~~----~~--~-----~v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~P----vV~~ 413 (492)
..+.+++.++++ +. + -|+++ +.++.+++..+|+.||+||+||.+||||++++||||||+| +|+|
T Consensus 330 ~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlS 409 (797)
T PLN03063 330 EYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLS 409 (797)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEee
Confidence 223344444333 11 1 12333 3557788999999999999999999999999999999999 9999
Q ss_pred ecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 414 TSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 414 ~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
.. +|.++.+. .+|++++|.|+++++++|..+++ +++.++++.+..+. .+++|..-++.+ +..++++
T Consensus 410 e~--~G~~~~l~-------~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~f-l~~l~~~ 478 (797)
T PLN03063 410 EF--AGAGQSLG-------AGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDF-MSELNDI 478 (797)
T ss_pred CC--cCchhhhc-------CCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHH-HHHHHHH
Confidence 98 88888652 34799999999999999999998 66666665555544 789999999984 7777655
No 79
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.92 E-value=6.2e-24 Score=188.63 Aligned_cols=166 Identities=19% Similarity=0.182 Sum_probs=141.4
Q ss_pred HHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH---cCcEEEEEecCCChhHHHHHHHHHHHhCC-CeEE
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM---RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVI 367 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~---~~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~ 367 (492)
|...+...+.+. +.++|+++||+.+.||++.+++|+..+.+ .+++|+|+|.+ .....++..++.++. +++.
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~---~~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG---EYKKELKNLIEKLNLKENII 76 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC---CHHHHHHHHHHHTTCGTTEE
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc---cccccccccccccccccccc
Confidence 455667777764 45889999999999999999999999873 48999999965 345567777776643 7999
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHH
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLS 447 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~ 447 (492)
+++..+.+++..+|+.||++++||.+|+||++++|||+||+|||+++. |+..|++.+ +.+|+++++.|+++++
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI--GGNNEIIND-----GVNGFLFDPNDIEELA 149 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS--THHHHHSGT-----TTSEEEESTTSHHHHH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceeeccc--cCCceeecc-----ccceEEeCCCCHHHHH
Confidence 998888888999999999999999999999999999999999999999 999999873 5579999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHh
Q 011163 448 QALEEIKNNPLSWKRKIKDAML 469 (492)
Q Consensus 448 ~ai~~~~~~~~~~~~~~~~a~~ 469 (492)
++|.+++++++.++.|++++++
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcC
Confidence 9999999999999999998864
No 80
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.92 E-value=2.6e-23 Score=204.28 Aligned_cols=395 Identities=15% Similarity=0.109 Sum_probs=235.0
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHH---------CCCeEEEEeecCCCCCc-------cccccc-ceeeee
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR---------KGHLVEVILPKYACMNL-------DGVQGL-REIKAE 69 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~---------~Gh~V~vi~~~~~~~~~-------~~~~~~-~~~~~~ 69 (492)
+.|+++++.++ ...||.+.-+.+-+-.+.. .||+|.+++-....... ....+. -++...
T Consensus 33 ~~~~~~~~~~~----~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv 108 (495)
T KOG0853|consen 33 PFEHVTFIHPD----LGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVV 108 (495)
T ss_pred cchhheeeccc----cccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEE
Confidence 44677777663 4569999999998888988 99999999975443210 000000 000000
Q ss_pred eeeecCCeeeEEEEEEEEECCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhh
Q 011163 70 CYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETA 149 (492)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~ 149 (492)
....+.+-. ...-......++.+.++.. ...+......+.+. ..+. .+...+.+.... ||++|-|.|.+.
T Consensus 109 ~~~lP~~~~-~~~~~~~~~~~~~il~~~~--~~~~k~~~~~d~~i---~d~~---~~~~~l~~~~~~-p~~~~~i~~~~h 178 (495)
T KOG0853|consen 109 GDWLPRAMG-QFLEQVAGCAYLRILRIPF--GILFKWAEKVDPII---EDFV---SACVPLLKQLSG-PDVIIKIYFYCH 178 (495)
T ss_pred EeecCcccc-hhhhhhhccceeEEEEecc--chhhhhhhhhceee---cchH---HHHHHHHHHhcC-CcccceeEEecc
Confidence 000000000 0000001123445554431 00000000011111 1111 222222332233 999999988877
Q ss_pred hHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccC
Q 011163 150 IVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVS 229 (492)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS 229 (492)
+...+++.+ .+++-+++-|.+... ..-....+|.+++-|
T Consensus 179 ~~~~lla~r------~g~~~~l~~~~l~~~-----------------------------------e~e~~~~~~~~~~ns 217 (495)
T KOG0853|consen 179 FPDSLLAKR------LGVLKVLYRHALDKI-----------------------------------EEETTGLAWKILVNS 217 (495)
T ss_pred chHHHhccc------cCccceeehhhhhhh-----------------------------------hhhhhhccceEecch
Confidence 776666442 567777777743210 001122244445444
Q ss_pred ccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceE
Q 011163 230 SMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIV 309 (492)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 309 (492)
..++......... ....++.+.+-++|.+.+.+. +|+. +.+.+...|...|... ...+
T Consensus 218 ~~~~~~f~~~~~~--------L~~~d~~~~y~ei~~s~~~~~-------~~~~-----~~~~~~~~r~~~~v~~--~d~~ 275 (495)
T KOG0853|consen 218 YFTKRQFKATFVS--------LSNSDITSTYPEIDGSWFTYG-------QYES-----HLELRLPVRLYRGVSG--IDRF 275 (495)
T ss_pred hhhhhhhhhhhhh--------cCCCCcceeeccccchhcccc-------cccc-----chhcccccceeeeecc--cceE
Confidence 4444333221110 122347888888987766652 1110 1111222233334432 2367
Q ss_pred EEEEeccccccCHHHHHHHHHHHhHc-------CcEEEEEecC-------CChhHHHHHHHHHHHhCC--CeEEEEeccC
Q 011163 310 VGCIFSDVSDVFLENLKAVVRGAKMR-------GIQFVFTGTN-------KLPSASRALVSFQEELKD--GIVIFVDSYD 373 (492)
Q Consensus 310 i~~~grl~~~Kg~~~li~a~~~l~~~-------~~~lvivG~g-------~~~~~~~~l~~~~~~~~~--~~v~~~~~~~ 373 (492)
+..+-|+.+.|+++++++|+..+... +.+++++|+. .+..+.+++..+++++.. +.+.|+....
T Consensus 276 ~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~ 355 (495)
T KOG0853|consen 276 FPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTT 355 (495)
T ss_pred eeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCc
Confidence 78889999999999999999887642 4678888832 123455678888888753 5666656666
Q ss_pred HHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHH---HHHHHH
Q 011163 374 DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNI---SLSQAL 450 (492)
Q Consensus 374 ~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~---~l~~ai 450 (492)
......+++.+.+.+.....|.||+|.+|||+||+||||++. ||..|+|. ++.||++++| +.+ .++++|
T Consensus 356 ~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~--GGP~EiV~-----~~~tG~l~dp-~~e~~~~~a~~~ 427 (495)
T KOG0853|consen 356 RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNN--GGPAEIVV-----HGVTGLLIDP-GQEAVAELADAL 427 (495)
T ss_pred hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecC--CCceEEEE-----cCCcceeeCC-chHHHHHHHHHH
Confidence 555555566666655544459999999999999999999999 99999998 4678999999 555 599999
Q ss_pred HHHhcCHHHHHHHHHHHHh---ccCCchhhHHHHHHHHHH
Q 011163 451 EEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYT 487 (492)
Q Consensus 451 ~~~~~~~~~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~ 487 (492)
.++..||+.|.+|++++++ +.|||.++.+++ ..+-.
T Consensus 428 ~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri-~~~~~ 466 (495)
T KOG0853|consen 428 LKLRRDPELWARMGKNGLKRVKEMFSWQHYSERI-ASVLG 466 (495)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhH
Confidence 9999999999999999986 679999998885 55543
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.92 E-value=2.3e-23 Score=223.89 Aligned_cols=317 Identities=11% Similarity=0.079 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCcccc--
Q 011163 120 FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARL-- 197 (492)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~-- 197 (492)
|....+.+.+.+.+.-..-|+|.+|+++-.++|.++++. ....++-+.+|-..+.. +.+..+......+
T Consensus 116 Y~~vN~~fA~~~~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlH~pfP~~----~~f~~lp~~~~ll~~ 186 (726)
T PRK14501 116 YERVNQRFAEAIAAIARPGDVVWVHDYQLMLLPAMLRER-----LPDARIGFFLHIPFPSF----EVFRLLPWREEILEG 186 (726)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCchhhhHHHHHHhh-----CCCCcEEEEeeCCCCCh----HHHhhCCChHHHHHH
Confidence 333445555555543334599999999999999988653 35789999999643211 1111111000000
Q ss_pred -CCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCccc
Q 011163 198 -HRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFL 276 (492)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~ 276 (492)
...+.+-+.. ....+..+..+..+..+... ...+ ...| +..++.++|||||++.|.+....
T Consensus 187 ll~~Dligf~t----~~~~r~Fl~~~~~~l~~~~~-~~~~--~~~g---------r~~~v~v~p~GID~~~f~~~~~~-- 248 (726)
T PRK14501 187 LLGADLIGFHT----YDYVRHFLSSVLRVLGYETE-LGEI--RLGG---------RIVRVDAFPMGIDYDKFHNSAQD-- 248 (726)
T ss_pred HhcCCeEEeCC----HHHHHHHHHHHHHHcCCccC-CCeE--EECC---------EEEEEEEEECeEcHHHHHHHhcC--
Confidence 0001111110 11122222222222221110 0001 0111 23468999999999888664200
Q ss_pred ccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecCC-C--
Q 011163 277 TENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK-L-- 347 (492)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g~-~-- 347 (492)
.........+++.++ +.++++++||+++.||+..+++|++++.+. +++|+++|.+. +
T Consensus 249 ---------~~~~~~~~~lr~~~~-----~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~ 314 (726)
T PRK14501 249 ---------PEVQEEIRRLRQDLR-----GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGV 314 (726)
T ss_pred ---------chHHHHHHHHHHHcC-----CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcch
Confidence 000112233444432 346899999999999999999999998652 36899887321 1
Q ss_pred ---hhHHHHHHHHHHHhCC--------CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCC-----ceE
Q 011163 348 ---PSASRALVSFQEELKD--------GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA-----API 411 (492)
Q Consensus 348 ---~~~~~~l~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~-----PvV 411 (492)
.++.+++.+++.+.+. ..+.+.+.++.+++..+|+.||+|++||.+||||+|++||||||+ |++
T Consensus 315 ~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vl 394 (726)
T PRK14501 315 PQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLIL 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEE
Confidence 1344455555544321 123455667889999999999999999999999999999999955 455
Q ss_pred EEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCCchhhHHHHHHHHHHH
Q 011163 412 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCNDIHISAYTA 488 (492)
Q Consensus 412 ~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~-~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~ 488 (492)
+..+ |+..+++ .|++++|.|+++++++|.++++++ +.+.+..++++. .+|||+..+++ |++.|.+
T Consensus 395 s~~~--G~~~~l~---------~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~-~l~~l~~ 462 (726)
T PRK14501 395 SEMA--GAAAELA---------EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASD-FLDELRE 462 (726)
T ss_pred eccc--chhHHhC---------cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Confidence 5555 7777654 269999999999999999999854 333333344443 78999999999 5888887
Q ss_pred H
Q 011163 489 I 489 (492)
Q Consensus 489 l 489 (492)
+
T Consensus 463 ~ 463 (726)
T PRK14501 463 A 463 (726)
T ss_pred H
Confidence 6
No 82
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.91 E-value=1.1e-22 Score=203.91 Aligned_cols=270 Identities=12% Similarity=-0.040 Sum_probs=180.3
Q ss_pred HHHHHHHHcCCCCCEEEEcC-chhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCccc
Q 011163 126 ASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQ 204 (492)
Q Consensus 126 ~~~~~~~~~~~~pDiVh~h~-~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
.+.++++ ..+||+||+|. +.......++.. .++.+..++|++.++.|... . . ..
T Consensus 91 ~l~~~i~--~~~pDvIi~thp~~~~~~~~~l~~-~~~~~~~~~p~~~~~tD~~~--~----------~----------~~ 145 (382)
T PLN02605 91 EVAKGLM--KYKPDIIVSVHPLMQHVPLRVLRW-QGKELGKKIPFTTVVTDLGT--C----------H----------PT 145 (382)
T ss_pred HHHHHHH--hcCcCEEEEeCcCcccCHHHHHHH-HhhccCCCCCEEEEECCCCC--c----------C----------cc
Confidence 3444444 36899999964 433322222222 21111257899888776410 0 0 00
Q ss_pred CCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccC
Q 011163 205 DNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAED 284 (492)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~ 284 (492)
...+.+|.++++|+..++.+... |. +++++.+++++++.+.+.+..
T Consensus 146 ------------w~~~~~d~~~~~s~~~~~~l~~~--g~--------~~~ki~v~g~~v~~~f~~~~~------------ 191 (382)
T PLN02605 146 ------------WFHKGVTRCFCPSEEVAKRALKR--GL--------EPSQIRVYGLPIRPSFARAVR------------ 191 (382)
T ss_pred ------------cccCCCCEEEECCHHHHHHHHHc--CC--------CHHHEEEECcccCHhhccCCC------------
Confidence 11246899999999887776542 21 467899999998864333221
Q ss_pred ccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHh------HcCcE-EEEEecCCChhHHHHHHHH
Q 011163 285 MKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK------MRGIQ-FVFTGTNKLPSASRALVSF 357 (492)
Q Consensus 285 ~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~------~~~~~-lvivG~g~~~~~~~~l~~~ 357 (492)
.+.++++++|++++ .++++++|+....|++..+++++..+. ..+.+ ++++|.+ ..+.+.+++.
T Consensus 192 ------~~~~~r~~~gl~~~--~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--~~~~~~L~~~ 261 (382)
T PLN02605 192 ------PKDELRRELGMDED--LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN--KKLQSKLESR 261 (382)
T ss_pred ------CHHHHHHHcCCCCC--CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC--HHHHHHHHhh
Confidence 34568899999864 478899999999999999999997653 23566 5566633 2344555543
Q ss_pred HHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecC----CCcccccccccccccce
Q 011163 358 QEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSS----DIEFRHFAEFDHESTRF 433 (492)
Q Consensus 358 ~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~----~gg~~e~v~~~~~~~g~ 433 (492)
.. ..+|+++|..+ +++++|++||++|.+| .|++++|||+||+|+|+++.. .|+...+++ ++
T Consensus 262 ~~---~~~v~~~G~~~--~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~------~g 326 (382)
T PLN02605 262 DW---KIPVKVRGFVT--NMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD------NG 326 (382)
T ss_pred cc---cCCeEEEeccc--cHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhHHHHHh------CC
Confidence 21 25788877664 4779999999999876 478999999999999999830 033433332 23
Q ss_pred eeeeecCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 434 SRFISSTFGNISLSQALEEIKNN-PLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 434 ~G~~~~~~~~~~l~~ai~~~~~~-~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
.|++ ..|+++++++|..+++| ++.+++|+++++. ...+++.+++.+
T Consensus 327 ~g~~--~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l 375 (382)
T PLN02605 327 FGAF--SESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDL 375 (382)
T ss_pred ceee--cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4554 37999999999999988 9999999998876 456677777664
No 83
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=4.1e-22 Score=199.14 Aligned_cols=265 Identities=15% Similarity=0.093 Sum_probs=174.0
Q ss_pred cCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccch
Q 011163 134 SRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVN 213 (492)
Q Consensus 134 ~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (492)
++.+..|+..+...+..+ +.. +.+.++|+.++|.... ++ +.+. ....
T Consensus 99 ~~~~~~i~~~~~P~~~~~---~~~------~~~~~~Vyd~~D~~~~--~~-------~~~~---------------~~~~ 145 (373)
T cd04950 99 LGFGRPILWYYTPYTLPV---AAL------LQASLVVYDCVDDLSA--FP-------GGPP---------------ELLE 145 (373)
T ss_pred cCCCCcEEEEeCccHHHH---Hhh------cCCCeEEEEcccchhc--cC-------CCCH---------------HHHH
Confidence 356677888875433222 211 2578999999874211 00 0000 0114
Q ss_pred hhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHH
Q 011163 214 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 293 (492)
Q Consensus 214 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
.++..++.||.|+++|+...+.+.. ...++.+|+||+|.+.|.+.... . ..
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~~~-------------~~~~i~~i~ngvd~~~f~~~~~~-------------~--~~- 196 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAKRR-------------LNPNVVLVPNGVDYEHFAAARDP-------------P--PP- 196 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhh-------------CCCCEEEcccccCHHHhhccccc-------------C--CC-
Confidence 5678889999999999988765543 23689999999999888764210 0 00
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccC
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD 373 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 373 (492)
.+...+ .+.+.++|+|++.+.++++.+.++++.. .+++|+|+|.++. .. + ...+ .. .+||+++|..+
T Consensus 197 -~~~~~~----~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~-~~-~-~~~~-~~--~~nV~~~G~~~ 263 (373)
T cd04950 197 -PADLAA----LPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDV-SI-D-PSAL-LR--LPNVHYLGPKP 263 (373)
T ss_pred -hhHHhc----CCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcC-cc-C-hhHh-cc--CCCEEEeCCCC
Confidence 001111 2347899999999988877666555432 4799999997621 11 1 1111 11 37999999999
Q ss_pred HHHHHHHHhcCCEEEECCCC-----CCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHH
Q 011163 374 DALLHLIFSGSDIILCHSFH-----DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQ 448 (492)
Q Consensus 374 ~~~~~~~~~~adi~v~pS~~-----E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ 448 (492)
.++++.+++.+|++++|+.. +++|+.++|+||||+|||+++. + ++++. +. |.++.++|++++++
T Consensus 264 ~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~--~---~~~~~-----~~-~~~~~~~d~~~~~~ 332 (373)
T cd04950 264 YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL--P---EVRRY-----ED-EVVLIADDPEEFVA 332 (373)
T ss_pred HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc--H---HHHhh-----cC-cEEEeCCCHHHHHH
Confidence 89999999999999999863 4689999999999999999876 4 44332 11 23444578999999
Q ss_pred HHHHHhcCHH-HHHHHHHHHHhccCCchhhHHHHHHHHH
Q 011163 449 ALEEIKNNPL-SWKRKIKDAMLQDFSWDADCNDIHISAY 486 (492)
Q Consensus 449 ai~~~~~~~~-~~~~~~~~a~~~~fsw~~~a~~~~~~~Y 486 (492)
+|..++.++. ...+.... ..+.|||+..++++ +...
T Consensus 333 ai~~~l~~~~~~~~~~~~~-~~~~~sW~~~a~~~-~~~l 369 (373)
T cd04950 333 AIEKALLEDGPARERRRLR-LAAQNSWDARAAEM-LEAL 369 (373)
T ss_pred HHHHHHhcCCchHHHHHHH-HHHHCCHHHHHHHH-HHHH
Confidence 9999764332 22222222 45789999999996 5433
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=4.3e-22 Score=199.89 Aligned_cols=226 Identities=10% Similarity=0.024 Sum_probs=155.2
Q ss_pred hhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHh
Q 011163 220 VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQL 299 (492)
Q Consensus 220 ~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (492)
..+|.+++.|+..++.+... |. +++++.++.|+++. .|.+.. .+.++++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~--gi--------~~~ki~v~GiPv~~-~f~~~~------------------~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV--GI--------DPSTVKVTGIPIDN-KFETPI------------------DQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHHc--CC--------CHHHEEEECeecCh-Hhcccc------------------cHHHHHHHc
Confidence 45888999999887776542 21 45678887777763 232210 234567788
Q ss_pred CCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHH
Q 011163 300 GLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 379 (492)
Q Consensus 300 g~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 379 (492)
|++++ +..++++.|++...||++.+++++.+. ..++++++++ |++..+.+.+++.... .++|.++|.. +.+..
T Consensus 197 ~l~~~-~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~-G~~~~l~~~l~~~~~~--~~~v~~~G~~--~~~~~ 269 (391)
T PRK13608 197 NLDPD-KQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMIC-GKSKELKRSLTAKFKS--NENVLILGYT--KHMNE 269 (391)
T ss_pred CCCCC-CCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEc-CCCHHHHHHHHHHhcc--CCCeEEEecc--chHHH
Confidence 98764 334567789999899999999986332 1368887775 3332333444443322 2578877654 34679
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHH
Q 011163 380 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS 459 (492)
Q Consensus 380 ~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~ 459 (492)
+|+.||++|. ++.|+++.|||++|+|+|+++. .+| .|...-....+.+.|+. ..|+++++++|..+++|++.
T Consensus 270 ~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~-~pg-qe~~N~~~~~~~G~g~~--~~~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 270 WMASSQLMIT----KPGGITISEGLARCIPMIFLNP-APG-QELENALYFEEKGFGKI--ADTPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HHHhhhEEEe----CCchHHHHHHHHhCCCEEECCC-CCC-cchhHHHHHHhCCcEEE--eCCHHHHHHHHHHHhcCHHH
Confidence 9999999996 3579999999999999999864 133 22211000001223444 56889999999999999999
Q ss_pred HHHHHHHHHh--ccCCchhhHHHHHHHHHHHHh
Q 011163 460 WKRKIKDAML--QDFSWDADCNDIHISAYTAIK 490 (492)
Q Consensus 460 ~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l~ 490 (492)
+++|+++++. ..|+|+.+++++ .+++..+.
T Consensus 342 ~~~m~~~~~~~~~~~s~~~i~~~l-~~l~~~~~ 373 (391)
T PRK13608 342 LTNMISTMEQDKIKYATQTICRDL-LDLIGHSS 373 (391)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-HHHhhhhh
Confidence 9999999876 679999999995 77877653
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=5.5e-20 Score=170.21 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=94.3
Q ss_pred EEeccccccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEecc-CHHHHHHHHhcCCEE
Q 011163 312 CIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSY-DDALLHLIFSGSDII 387 (492)
Q Consensus 312 ~~grl~~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~-~~~~~~~~~~~adi~ 387 (492)
++|++.+.||++.+++|+..+.+. +++++++|.+.+ ....+..+.... .++|.+.+.+ +.+....++++||++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE---REYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC---hHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 899999999999999999999864 899999996643 222222223332 3799988876 556667777779999
Q ss_pred EECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeee
Q 011163 388 LCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS 438 (492)
Q Consensus 388 v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~ 438 (492)
++||..|++|++++|||+||+|+|+|+. ++..|++.+ +.+|+++
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~--~~~~e~i~~-----~~~g~~~ 229 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDV--GGPPEIVED-----GLTGLLV 229 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCC--CCcceEEEC-----CCceEEC
Confidence 9999999999999999999999999999 999998763 4567764
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.85 E-value=1.4e-19 Score=180.51 Aligned_cols=276 Identities=12% Similarity=0.107 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-chhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcc
Q 011163 125 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 203 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~-~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
..+.+.+++ .+||+||+|. +..++.++++++. .++|++++-++....+.+ ..+
T Consensus 76 ~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~------~~ipv~h~~~g~~s~~~~------------~~~------ 129 (365)
T TIGR00236 76 EGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFY------LQIPVGHVEAGLRTGDRY------------SPM------ 129 (365)
T ss_pred HHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHH------hCCCEEEEeCCCCcCCCC------------CCC------
Confidence 444444443 7899999995 5555655555443 689998654432110000 000
Q ss_pred cCCCCCccchhhHHHH-hhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCC-CCCCcCCCCCcccccccC
Q 011163 204 QDNTKTHLVNILKGGV-VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYC 281 (492)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGv-d~~~f~p~~~~~~~~~~~ 281 (492)
. ....+..+ +.||.++++|+..++.+... | ++++++.+++||+ |...+.+.
T Consensus 130 --~-----~~~~r~~~~~~ad~~~~~s~~~~~~l~~~--G--------~~~~~I~vign~~~d~~~~~~~---------- 182 (365)
T TIGR00236 130 --P-----EEINRQLTGHIADLHFAPTEQAKDNLLRE--N--------VKADSIFVTGNTVIDALLTNVE---------- 182 (365)
T ss_pred --c-----cHHHHHHHHHHHHhccCCCHHHHHHHHHc--C--------CCcccEEEeCChHHHHHHHHHh----------
Confidence 0 01123333 45899999999998887652 3 2567899999996 42211110
Q ss_pred ccCccChHHHHHHHHHHhCCCCCCCceEEEEEecc-ccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHH
Q 011163 282 AEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSD-VSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQ 358 (492)
Q Consensus 282 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl-~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~ 358 (492)
...+..++++++.. +..+++..+|. ...||++.+++|+.++.+ .++++++.| ++++...+.+.
T Consensus 183 -------~~~~~~~~~~~~~~---~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~-~~~~~~~~~~~--- 248 (365)
T TIGR00236 183 -------IAYSSPVLSEFGED---KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPV-HLNPVVREPLH--- 248 (365)
T ss_pred -------hccchhHHHhcCCC---CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEEC-CCChHHHHHHH---
Confidence 00123455666532 22344444453 356899999999999864 368888886 33333333332
Q ss_pred HHhC-CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEE-ecCCCcccccccccccccceeee
Q 011163 359 EELK-DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSRF 436 (492)
Q Consensus 359 ~~~~-~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~-~~~~gg~~e~v~~~~~~~g~~G~ 436 (492)
+.++ .++|++++.....+...+++.||+++.+| |.+.+|||+||+|+|++ +. |+..|.+.. | +|.
T Consensus 249 ~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~--~~~~e~~~~-----g-~~~ 315 (365)
T TIGR00236 249 KHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDT--TERPETVEA-----G-TNK 315 (365)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCC--CCChHHHhc-----C-ceE
Confidence 2222 26899998777767778999999999988 55689999999999996 56 778887752 3 345
Q ss_pred eecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 437 ISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 437 ~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
++ +.|++++++++..+++|++.+++++++... ...+++++++.+
T Consensus 316 lv-~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 316 LV-GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEEL 361 (365)
T ss_pred Ee-CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHH
Confidence 66 479999999999999999988888765421 234455555553
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.84 E-value=1.4e-18 Score=174.72 Aligned_cols=178 Identities=9% Similarity=0.029 Sum_probs=139.7
Q ss_pred CeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH
Q 011163 255 KLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM 334 (492)
Q Consensus 255 ~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~ 334 (492)
++.++|.|||.+.|.+.... .........+|++++ +..+|++++|+++.||+...++||+++.+
T Consensus 249 ~v~~~PiGID~~~f~~~~~~-----------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~ 312 (487)
T TIGR02398 249 KLGAHPVGTDPERIRSALAA-----------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLE 312 (487)
T ss_pred EEEEEECEecHHHHHHHhcC-----------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHH
Confidence 47899999999887553100 011223456888887 24689999999999999999999999875
Q ss_pred c------CcEEEEEecCCC------hhHHHHHHHHHHHhCC--------CeEEEEeccCHHHHHHHHhcCCEEEECCCCC
Q 011163 335 R------GIQFVFTGTNKL------PSASRALVSFQEELKD--------GIVIFVDSYDDALLHLIFSGSDIILCHSFHD 394 (492)
Q Consensus 335 ~------~~~lvivG~g~~------~~~~~~l~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E 394 (492)
. ++.|+++|.+.. .++.+++++++.+.+. ..+.+.+.++.+++..+|+.||+++.||..|
T Consensus 313 ~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrD 392 (487)
T TIGR02398 313 RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRD 392 (487)
T ss_pred hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcccc
Confidence 2 478999985421 2356677777766531 2345667778899999999999999999999
Q ss_pred CCchHHHHHhhcCC----ceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHH
Q 011163 395 PLLQVPLKALKYGA----APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 458 (492)
Q Consensus 395 ~~glv~lEAma~G~----PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~ 458 (492)
|++||..|+++|+. |+|.|.. +|..+... .++++.|.|+++++++|...++.|.
T Consensus 393 GmNLVa~Eyva~~~~~~GvLILSef--aGaa~~l~--------~AllVNP~d~~~~A~ai~~AL~m~~ 450 (487)
T TIGR02398 393 GLNLVAKEYVAAQGLLDGVLVLSEF--AGAAVELK--------GALLTNPYDPVRMDETIYVALAMPK 450 (487)
T ss_pred ccCcchhhHHhhhcCCCCCEEEecc--ccchhhcC--------CCEEECCCCHHHHHHHHHHHHcCCH
Confidence 99999999999988 9999999 88876553 2599999999999999999998664
No 88
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.84 E-value=1.3e-18 Score=174.84 Aligned_cols=200 Identities=12% Similarity=0.038 Sum_probs=134.2
Q ss_pred HHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHH
Q 011163 218 GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 297 (492)
Q Consensus 218 ~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (492)
..+.+|.++++|+...+.+.. .| .++.++.|.+... ..+. ..+..+++
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~--~g-----------~~~~~~G~p~~~~-~~~~------------------~~~~~~~~ 178 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDK--LG-----------VPVTFVGHPLADA-IPLL------------------PDRAAARA 178 (380)
T ss_pred HHHHHhhheeCCccCHHHHHh--cC-----------CCeEEECcCHHHh-cccc------------------cChHHHHH
Confidence 467789999999877665432 11 2344444443321 1110 02445777
Q ss_pred HhCCCCCCCceEEEEEe-ccccc-cCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHh-CCCeEEEEecc
Q 011163 298 QLGLSKDASTIVVGCIF-SDVSD-VFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEEL-KDGIVIFVDSY 372 (492)
Q Consensus 298 ~lg~~~~~~~~~i~~~g-rl~~~-Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~-~~~~v~~~~~~ 372 (492)
++|++++. ..++++.| |..+. ++.+.+++|++.+.+. +++++++|.++ ...+.+++..+++ + -++.+.
T Consensus 179 ~l~~~~~~-~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~--~~~~~~~~~~~~~~~-~~v~~~--- 251 (380)
T PRK00025 179 RLGLDPDA-RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP--KRREQIEEALAEYAG-LEVTLL--- 251 (380)
T ss_pred HcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--hhHHHHHHHHhhcCC-CCeEEE---
Confidence 89987543 23344445 45444 4468899999988653 68999998422 3455666666554 2 235443
Q ss_pred CHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEE-----------------ecCCCcccccccccccccceee
Q 011163 373 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-----------------TSSDIEFRHFAEFDHESTRFSR 435 (492)
Q Consensus 373 ~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~-----------------~~~~gg~~e~v~~~~~~~g~~G 435 (492)
+ +++..+|+.||+++++| |.+.+|||++|+|+|++ +. +++++++.... ...+
T Consensus 252 ~-~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~---~~~~ 320 (380)
T PRK00025 252 D-GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPY--VSLPNLLAGRE---LVPE 320 (380)
T ss_pred c-ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCe--eehHHHhcCCC---cchh
Confidence 2 24678999999999987 88999999999999987 34 56666654321 1245
Q ss_pred eeecCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011163 436 FISSTFGNISLSQALEEIKNNPLSWKRKIKDA 467 (492)
Q Consensus 436 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a 467 (492)
++.+..|++.+++++..+++|++.+++|++++
T Consensus 321 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 321 LLQEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred hcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77788899999999999999999999998876
No 89
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.83 E-value=4e-19 Score=177.11 Aligned_cols=428 Identities=14% Similarity=0.127 Sum_probs=213.2
Q ss_pred ccCcHHHHHhHHHHHHHH-CCCeEEEEeecCCCCCcccccccceeeeeee---eecCCeeeEEEEEEEEECCeEEEEEcc
Q 011163 23 SIGSLASYVTGLSGALQR-KGHLVEVILPKYACMNLDGVQGLREIKAECY---SYFNGQLHANKIWIGVVSGIGVTFIQP 98 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~-~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gv~v~~i~~ 98 (492)
++||+-+++..-|..+.+ .|.+..++.|........+.+.+.+....+. -........+.+-++.++|.+.+.+-.
T Consensus 9 KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~G~P~vIL~D 88 (633)
T PF05693_consen 9 KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIPGRPIVILFD 88 (633)
T ss_dssp -SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESSTT--EEEEEE
T ss_pred ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeECCcCeEEEEe
Confidence 679999999999999987 5999999999755321111000000000000 000111223444455667887554421
Q ss_pred CCCCCCccC--------------CCCCCCCC--hhHHHHHHHHHHHHHHHHc-C-CCCCEEEEcCchhhhHHHHHHHHHh
Q 011163 99 LHYSSFFNR--------------ESVYGYSD--DFERFTYFSRASLDYIVKS-R-KQPDVLHIHNWETAIVGPLFWDIFV 160 (492)
Q Consensus 99 ~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~pDiVh~h~~~~~~~~~~~~~~~~ 160 (492)
. ..++.. ..+.++.+ +...|.+....+++.+.+. . ...=|.|+|.|++++...++++.
T Consensus 89 ~--~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~gll~lr~~-- 164 (633)
T PF05693_consen 89 F--GSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGVGLLYLRKR-- 164 (633)
T ss_dssp G--GGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTTHHHHHHHT--
T ss_pred C--chHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhHHHHHHhcc--
Confidence 1 111111 01111111 2334444444454444442 2 22337899999999886666442
Q ss_pred hcCCCCCcEEEEecCCCCCCC-CC-----chhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchh
Q 011163 161 KQGLEGTRILLSCHNLNSLCL-EH-----PDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSK 234 (492)
Q Consensus 161 ~~~~~~~~~v~t~H~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 234 (492)
...+.+|+|.|.+..... +. ++.+.....+... .....+ ....+++.+...||.+++||+-++.
T Consensus 165 ---~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA----~~~~i~---~k~~iEraaA~~AdvFTTVSeITa~ 234 (633)
T PF05693_consen 165 ---KPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEA----GERNIY---HKHSIERAAAHYADVFTTVSEITAK 234 (633)
T ss_dssp ---T-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHH----HHTT-H---HHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred ---CCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccc----cCccch---HHHHHHHHHHHhcCeeeehhhhHHH
Confidence 368899999997432000 00 0001000000000 000000 1235788999999999999999988
Q ss_pred hhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHH----HHHh-C---CCCCCC
Q 011163 235 GRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL----QQQL-G---LSKDAS 306 (492)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l-g---~~~~~~ 306 (492)
+... ..+ ...=.|+|||+|.+.|.... .+ . ......|..+ +..+ | +.. ++
T Consensus 235 Ea~~-LL~----------r~pDvV~pNGl~v~~~~~~~-ef-----q----nl~~~~k~ki~~fv~~~f~g~~dfd~-d~ 292 (633)
T PF05693_consen 235 EAEH-LLK----------RKPDVVTPNGLNVDKFPALH-EF-----Q----NLHAKAKEKIHEFVRGHFYGHYDFDL-DK 292 (633)
T ss_dssp HHHH-HHS----------S--SEE----B-GGGTSSTT-HH-----H----HHHHHHHHHHHHHHHHHSTT---S-G-GG
T ss_pred HHHH-HhC----------CCCCEEcCCCccccccccch-HH-----H----HHHHHHHHHHHHHHHHHhcccCCCCc-cc
Confidence 7643 111 12237899999977654431 00 0 0111223322 3332 2 222 24
Q ss_pred ceEEEEEeccc-cccCHHHHHHHHHHHhH----c--Cc---EEEEEecCCC-----------------------------
Q 011163 307 TIVVGCIFSDV-SDVFLENLKAVVRGAKM----R--GI---QFVFTGTNKL----------------------------- 347 (492)
Q Consensus 307 ~~~i~~~grl~-~~Kg~~~li~a~~~l~~----~--~~---~lvivG~g~~----------------------------- 347 (492)
..+|...||.. ..||+|.+|+|+.+|.. . +. -|+|+-..-.
T Consensus 293 tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~ 372 (633)
T PF05693_consen 293 TLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGK 372 (633)
T ss_dssp EEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 67778889977 89999999999988853 1 22 3444321100
Q ss_pred -----------hhHHH------------------------------------HHHHHHHHhC-----CCeE--EEEecc-
Q 011163 348 -----------PSASR------------------------------------ALVSFQEELK-----DGIV--IFVDSY- 372 (492)
Q Consensus 348 -----------~~~~~------------------------------------~l~~~~~~~~-----~~~v--~~~~~~- 372 (492)
|+..+ .+-...++++ .++| +|...+
T Consensus 373 ~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL 452 (633)
T PF05693_consen 373 RLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYL 452 (633)
T ss_dssp HHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S--
T ss_pred HHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccc
Confidence 00000 1111112221 2444 444333
Q ss_pred ---C---HHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeee-cC--CCH
Q 011163 373 ---D---DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS-ST--FGN 443 (492)
Q Consensus 373 ---~---~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~-~~--~~~ 443 (492)
+ .-...+++.+||+.|+||+|||+|.+.+|+.++|+|.|.|+. .|+...+..........|+.+ +- .+.
T Consensus 453 ~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnL--sGFG~~~~~~~~~~~~~GV~VvdR~~~n~ 530 (633)
T PF05693_consen 453 SGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNL--SGFGCWMQEHIEDPEEYGVYVVDRRDKNY 530 (633)
T ss_dssp -TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETT--BHHHHHHHTTS-HHGGGTEEEE-SSSS-H
T ss_pred cCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccc--hhHHHHHHHhhccCcCCcEEEEeCCCCCH
Confidence 1 113457889999999999999999999999999999999999 888876653221112235543 32 233
Q ss_pred ----HHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 444 ----ISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 444 ----~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
++|++.|..+.. +...+..++.++.. +.++|+..... |.+.|+..
T Consensus 531 ~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~y-Y~~Ay~~A 582 (633)
T PF05693_consen 531 DESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKY-YEKAYDLA 582 (633)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHH
Confidence 456666666654 44445555555433 88999999988 58899854
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.80 E-value=1.2e-17 Score=166.56 Aligned_cols=259 Identities=12% Similarity=0.074 Sum_probs=166.4
Q ss_pred HHHHHHHHHcCCCCCEEEEcCc-hhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcc
Q 011163 125 RASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 203 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~~-~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
..+.+.+++ .+||+||+|.. ...+.+.++++. .++|++++.|+...+. . +..
T Consensus 78 ~~l~~~l~~--~~pDvV~~~g~~~~~~~~~~aa~~------~~iPvv~~~~g~~s~~---~------~~~---------- 130 (363)
T cd03786 78 IGLEAVLLE--EKPDLVLVLGDTNETLAAALAAFK------LGIPVAHVEAGLRSFD---R------GMP---------- 130 (363)
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHH------cCCCEEEEecccccCC---C------CCC----------
Confidence 444444443 58999999963 333443333332 6899997766431100 0 000
Q ss_pred cCCCCCccchhhH-HHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCC-CCCCcCCCCCcccccccC
Q 011163 204 QDNTKTHLVNILK-GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYC 281 (492)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGv-d~~~f~p~~~~~~~~~~~ 281 (492)
....+ ...+.+|.++++|+...+.+.. .| ++++++.+++|++ |...+.+..
T Consensus 131 --------~~~~r~~~~~~ad~~~~~s~~~~~~l~~--~G--------~~~~kI~vign~v~d~~~~~~~~--------- 183 (363)
T cd03786 131 --------DEENRHAIDKLSDLHFAPTEEARRNLLQ--EG--------EPPERIFVVGNTMIDALLRLLEL--------- 183 (363)
T ss_pred --------chHHHHHHHHHhhhccCCCHHHHHHHHH--cC--------CCcccEEEECchHHHHHHHHHHh---------
Confidence 01112 2346789999999988777654 22 2567899999995 532221110
Q ss_pred ccCccChHHHHHHHHHHhCCCCCCCceEEEEEecccc---ccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHH
Q 011163 282 AEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVS---DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ 358 (492)
Q Consensus 282 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~---~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~ 358 (492)
......++.++++. +..++++.||... .|+++.+++|++++.+.++.+++.|.+ ...+.+++..
T Consensus 184 --------~~~~~~~~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~---~~~~~l~~~~ 250 (363)
T cd03786 184 --------AKKELILELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP---RTRPRIREAG 250 (363)
T ss_pred --------hccchhhhhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC---ChHHHHHHHH
Confidence 00111235667753 3356778888764 799999999999886544666665533 2345666666
Q ss_pred HHhC--CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeee
Q 011163 359 EELK--DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRF 436 (492)
Q Consensus 359 ~~~~--~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~ 436 (492)
.++. .++|.+.+....+++..+|+.||++|.||. | +..|||++|+|+|+++. .+...+.++ +|.
T Consensus 251 ~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~-~~~~~~~~~--------~g~ 316 (363)
T cd03786 251 LEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRD-RTERPETVE--------SGT 316 (363)
T ss_pred HhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCC-CCccchhhh--------eee
Confidence 6553 268888876666778899999999999995 4 47999999999999875 133445543 233
Q ss_pred eecC-CCHHHHHHHHHHHhcCHHHHHHHH
Q 011163 437 ISST-FGNISLSQALEEIKNNPLSWKRKI 464 (492)
Q Consensus 437 ~~~~-~~~~~l~~ai~~~~~~~~~~~~~~ 464 (492)
.+.. .|+++++++|..+++++..+.+|.
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 3333 368999999999999988776664
No 91
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=1.5e-17 Score=163.32 Aligned_cols=222 Identities=20% Similarity=0.244 Sum_probs=166.2
Q ss_pred cCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCC
Q 011163 222 SNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL 301 (492)
Q Consensus 222 ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 301 (492)
.+.+++.|....+.+... . ...+..+++|+++.+.+.+. ..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~--------------------------~~~~ 193 (381)
T COG0438 151 ADRVIAVSPALKELLEAL-G----------VPNKIVVIPNGIDTEKFAPA--------------------------RIGL 193 (381)
T ss_pred ccEEEECCHHHHHHHHHh-C----------CCCCceEecCCcCHHHcCcc--------------------------ccCC
Confidence 566777776553322221 1 12378899999998766542 0111
Q ss_pred CCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHH
Q 011163 302 SKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLH 378 (492)
Q Consensus 302 ~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~ 378 (492)
..+.....++++||+.+.||++.+++++..+.+. +..++++|.++.. .+.+..+...+.. +++.+.|..+.++..
T Consensus 194 ~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 194 LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER--REELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc--HHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 2111126799999999999999999999999864 3799999977532 2344445555543 688887777756666
Q ss_pred HHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHH
Q 011163 379 LIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 458 (492)
Q Consensus 379 ~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~ 458 (492)
.+++.||++++||.+|+||++++|||++|+|+|+++. ++..|++.. +.+|+++++.+.+++++++..++++++
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDV--GGIPEVVED-----GETGLLVPPGDVEELADALEQLLEDPE 344 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCC--CChHHHhcC-----CCceEecCCCCHHHHHHHHHHHhcCHH
Confidence 7899999999999999999999999999999999999 899998863 335787777789999999999999887
Q ss_pred HHHHHHHHHHh---ccCCchhhHHHHHHHHHHHHh
Q 011163 459 SWKRKIKDAML---QDFSWDADCNDIHISAYTAIK 490 (492)
Q Consensus 459 ~~~~~~~~a~~---~~fsw~~~a~~~~~~~Y~~l~ 490 (492)
.++.+++++.. ..|+|+.+++++ .++|..+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 378 (381)
T COG0438 345 LREELGEAARERVEEEFSWERIAEQL-LELYEELL 378 (381)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHH
Confidence 67777653322 689999999995 88888654
No 92
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.77 E-value=4.7e-17 Score=159.91 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=154.5
Q ss_pred CCC-CEEEEcCchh-h--hHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCcc
Q 011163 136 KQP-DVLHIHNWET-A--IVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHL 211 (492)
Q Consensus 136 ~~p-DiVh~h~~~~-~--~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (492)
.++ |+||+|+... + +...++ ...+ ..++|+|+++||..+... .. .. ..
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~-~~~k---~~~~k~i~~ihD~~~~~~-----------~~--------~~-----~~ 113 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFV-DKLK---KKQVKIIILIHDIEPLRF-----------DS--------NY-----YL 113 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHH-HHHH---HcCCEEEEEECCcHHHhc-----------cc--------cc-----hh
Confidence 566 9999998321 1 112222 2221 147999999998643210 00 00 00
Q ss_pred chhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHH
Q 011163 212 VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVC 291 (492)
Q Consensus 212 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~ 291 (492)
..+++..++.||.+|++|+.+++.+... |. ...++.+++|..+.....+.
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~~--g~--------~~~~i~~~~~~~~~~~~~~~-------------------- 163 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVEE--GL--------TTDKIIVQGIFDYLNDIELV-------------------- 163 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHHc--CC--------CcCceEeccccccccccccc--------------------
Confidence 2456788899999999999998877642 21 24566666554432110000
Q ss_pred HHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEec
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS 371 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~ 371 (492)
. .+ ...+.++|+|++.+..+ +.. ...+++|+|+|+|+... .. .++|.|.|.
T Consensus 164 -----~---~~--~~~~~i~yaG~l~k~~~----l~~----~~~~~~l~i~G~g~~~~----------~~-~~~V~f~G~ 214 (333)
T PRK09814 164 -----K---TP--SFQKKINFAGNLEKSPF----LKN----WSQGIKLTVFGPNPEDL----------EN-SANISYKGW 214 (333)
T ss_pred -----c---cc--cCCceEEEecChhhchH----HHh----cCCCCeEEEECCCcccc----------cc-CCCeEEecC
Confidence 0 00 12357999999995432 111 12478999999875311 22 379999999
Q ss_pred cCHHHHHHHHhcCCEEEECCCC-----------CCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 372 YDDALLHLIFSGSDIILCHSFH-----------DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 372 ~~~~~~~~~~~~adi~v~pS~~-----------E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
++.+++..+|+. |+.+.+... -++|.-+.|+||||+|||+++. |++.|+|++ +.+|++++
T Consensus 215 ~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~--~~~~~~V~~-----~~~G~~v~- 285 (333)
T PRK09814 215 FDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK--AAIADFIVE-----NGLGFVVD- 285 (333)
T ss_pred CCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC--ccHHHHHHh-----CCceEEeC-
Confidence 999999999887 665554321 2456668899999999999999 999999973 56899997
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 011163 441 FGNISLSQALEEIKNNPLSWKRKIKDAML 469 (492)
Q Consensus 441 ~~~~~l~~ai~~~~~~~~~~~~~~~~a~~ 469 (492)
+.++++++|..+ +++.+++|+++++.
T Consensus 286 -~~~el~~~l~~~--~~~~~~~m~~n~~~ 311 (333)
T PRK09814 286 -SLEELPEIIDNI--TEEEYQEMVENVKK 311 (333)
T ss_pred -CHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 677899999986 35678889998874
No 93
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.76 E-value=1.9e-16 Score=169.23 Aligned_cols=307 Identities=9% Similarity=0.021 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCC
Q 011163 122 YFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPD 201 (492)
Q Consensus 122 ~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
...+.+...+.+.-..-|+|-+|+++-.++|.++++. ....++-+.+|...+. .+.+..+..
T Consensus 216 ~vN~~FA~~i~~~~~~gD~VWVHDYHL~LlP~~LR~~-----~p~~~IGfFlHiPFPs----~Eifr~LP~--------- 277 (934)
T PLN03064 216 KANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEY-----NSNMKVGWFLHTPFPS----SEIHRTLPS--------- 277 (934)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHHh-----CCCCcEEEEecCCCCC----hHHHhhCCc---------
Confidence 3344444444443233489999999999999999764 3678999999964221 111111110
Q ss_pred cccCCCCCccchhhHHHHhhcCceeccCccchhhhhhc---ccCCCccHH-Hhh--hcCCeeeecCCCCCCCcCCCCCcc
Q 011163 202 RLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLEST-LAI--HQDKLLVAPCGFDSSTWDPSNDKF 275 (492)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~~l~~~-~~~--~~~~~~vI~nGvd~~~f~p~~~~~ 275 (492)
..-+-.++-.||.|-.-+..+++..... ..+...... +.. +.-++.+.|-|||.+.|......
T Consensus 278 ----------r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~- 346 (934)
T PLN03064 278 ----------RSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET- 346 (934)
T ss_pred ----------HHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC-
Confidence 0122233444565555555554433221 000000000 000 12246678999998877543100
Q ss_pred cccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--Cc--EEEEE-------ec
Q 011163 276 LTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GI--QFVFT-------GT 344 (492)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~~--~lviv-------G~ 344 (492)
..-.....+++++++ +..+|++++|+++.||+...++||+++.+. ++ +++++ ++
T Consensus 347 ----------~~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~ 411 (934)
T PLN03064 347 ----------PQVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTD 411 (934)
T ss_pred ----------hhHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCC
Confidence 001123346777765 236899999999999999999999987642 22 34444 32
Q ss_pred CCC-hhHHHHHHHHHHHhCC--Ce-----EEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCC----ceE
Q 011163 345 NKL-PSASRALVSFQEELKD--GI-----VIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA----API 411 (492)
Q Consensus 345 g~~-~~~~~~l~~~~~~~~~--~~-----v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~----PvV 411 (492)
+++ ..+..++.+++.+.+. +. |+++ ..++.+++.++|+.||++++||..||++++..|+|+|+. ++|
T Consensus 412 v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLI 491 (934)
T PLN03064 412 VPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLI 491 (934)
T ss_pred cHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeE
Confidence 221 1233445555555431 11 4433 246788899999999999999999999999999999944 466
Q ss_pred EEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHH
Q 011163 412 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDI 481 (492)
Q Consensus 412 ~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~ 481 (492)
.|.. +|..+.+. ..++++.|.|.++++++|...+. +++.++++.+..+. ..+||..-++.+
T Consensus 492 LSEf--aGaa~~L~-------~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~f 555 (934)
T PLN03064 492 LSEF--AGAAQSLG-------AGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETF 555 (934)
T ss_pred EeCC--CchHHHhC-------CceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6888 77777662 13699999999999999999998 77777776666655 788988888774
No 94
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=2e-14 Score=132.42 Aligned_cols=296 Identities=12% Similarity=0.020 Sum_probs=190.0
Q ss_pred CCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCC-CccccCCCCcccCCCCCccch
Q 011163 135 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGL-DPARLHRPDRLQDNTKTHLVN 213 (492)
Q Consensus 135 ~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (492)
+..|||-.-...++...|. ++. +.++|++.-+|=... ..+.++.+.. +.+-+....++-+|+ .+..
T Consensus 148 r~~Pdi~IDtMGY~fs~p~-~r~------l~~~~V~aYvHYP~i----S~DML~~l~qrq~s~~l~~~KlaY~r--lFa~ 214 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSYPI-FRR------LRRIPVVAYVHYPTI----STDMLKKLFQRQKSGILVWGKLAYWR--LFAL 214 (465)
T ss_pred hCCchheEecCCCcchhHH-HHH------HccCceEEEEecccc----cHHHHHHHHhhhhcchhhhHHHHHHH--HHHH
Confidence 5889996655433333433 322 378999999993211 1111111100 000010011111111 0112
Q ss_pred hhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHH
Q 011163 214 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 293 (492)
Q Consensus 214 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~ 293 (492)
+...+-..||.+++.|..+...+.+ +- ...++++++..-+++
T Consensus 215 lY~~~G~~ad~vm~NssWT~nHI~q---------iW--~~~~~~iVyPPC~~e--------------------------- 256 (465)
T KOG1387|consen 215 LYQSAGSKADIVMTNSSWTNNHIKQ---------IW--QSNTCSIVYPPCSTE--------------------------- 256 (465)
T ss_pred HHHhccccceEEEecchhhHHHHHH---------Hh--hccceeEEcCCCCHH---------------------------
Confidence 2334456799999999888766654 11 124567776555543
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHH-HHHHHHHHHhH------cCcEEEEEecCC---ChhHHHHHHHHHHHhCC
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLE-NLKAVVRGAKM------RGIQFVFTGTNK---LPSASRALVSFQEELKD 363 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~-~li~a~~~l~~------~~~~lvivG~g~---~~~~~~~l~~~~~~~~~ 363 (492)
.+.+..+. .+.+.+.++++|.+.|+|++. +=++|+-.... .+++|+|+|+.. |.+..+.++.+++.+..
T Consensus 257 ~lks~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i 335 (465)
T KOG1387|consen 257 DLKSKFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKI 335 (465)
T ss_pred HHHHHhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCC
Confidence 33344444 334567899999999999999 22444433221 268999999643 23344567777777753
Q ss_pred -CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccc-eeeeeecCC
Q 011163 364 -GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTR-FSRFISSTF 441 (492)
Q Consensus 364 -~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g-~~G~~~~~~ 441 (492)
++|.|....+.+++..+++.|.+.|..=+.|-||+.+.|+||+|+-+|+.+.+ |..-|+|... +| .+||+.+
T Consensus 336 ~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg-GP~lDIV~~~---~G~~tGFla~-- 409 (465)
T KOG1387|consen 336 PKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG-GPLLDIVTPW---DGETTGFLAP-- 409 (465)
T ss_pred ccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC-CCceeeeecc---CCccceeecC--
Confidence 78999888888888899999999999999999999999999999999999882 4556776532 23 3699984
Q ss_pred CHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCCchhhHHHHHHHHHHHH
Q 011163 442 GNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 442 ~~~~l~~ai~~~~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
+.++.++++.++.. +++.+..++++|+. .+|+-....+. +...+.++
T Consensus 410 t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd-~~~~i~kl 459 (465)
T KOG1387|consen 410 TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKD-WENPICKL 459 (465)
T ss_pred ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHh-HhHHHHHh
Confidence 45588999888775 77778888888876 67887777776 36665554
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.62 E-value=1.1e-13 Score=138.45 Aligned_cols=261 Identities=9% Similarity=-0.047 Sum_probs=152.2
Q ss_pred HHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCccc
Q 011163 125 RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQ 204 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (492)
+...+.++ ..+||+|.++++ .++- ..+.+.. +..++|+++.+. . +.| ++
T Consensus 79 ~~~~~~l~--~~kPd~vi~~g~-~~~~-~~~a~aa---~~~gip~v~~i~-P--------~~w-------aw-------- 127 (385)
T TIGR00215 79 KEVVQLAK--QAKPDLLVGIDA-PDFN-LTKELKK---KDPGIKIIYYIS-P--------QVW-------AW-------- 127 (385)
T ss_pred HHHHHHHH--hcCCCEEEEeCC-CCcc-HHHHHHH---hhCCCCEEEEeC-C--------cHh-------hc--------
Confidence 34444444 379999999985 3322 2221211 237899986442 1 111 00
Q ss_pred CCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccC
Q 011163 205 DNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAED 284 (492)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~ 284 (492)
. .+..+...+.+|.++++++...+.+.. ...+..++.|++-.+.....
T Consensus 128 --~----~~~~r~l~~~~d~v~~~~~~e~~~~~~-------------~g~~~~~vGnPv~~~~~~~~------------- 175 (385)
T TIGR00215 128 --R----KWRAKKIEKATDFLLAILPFEKAFYQK-------------KNVPCRFVGHPLLDAIPLYK------------- 175 (385)
T ss_pred --C----cchHHHHHHHHhHhhccCCCcHHHHHh-------------cCCCEEEECCchhhhccccC-------------
Confidence 0 122455567899999999876654332 12355667777632211000
Q ss_pred ccChHHHHHHHHHHhCCCCCCCceEEEE-E-ecccc-ccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHH
Q 011163 285 MKGKTVCKVTLQQQLGLSKDASTIVVGC-I-FSDVS-DVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQE 359 (492)
Q Consensus 285 ~~~~~~~~~~~~~~lg~~~~~~~~~i~~-~-grl~~-~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~ 359 (492)
..+.+.++++|++++. +++++ . +|..+ .|++..+++|++.+.+. ++++++.+..+ ...+.++++.+
T Consensus 176 -----~~~~~~r~~lgl~~~~--~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~--~~~~~~~~~~~ 246 (385)
T TIGR00215 176 -----PDRKSAREKLGIDHNG--ETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF--KRRLQFEQIKA 246 (385)
T ss_pred -----CCHHHHHHHcCCCCCC--CEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc--hhHHHHHHHHH
Confidence 0244567788987543 44433 3 37776 78999999999988753 67887765221 22344555555
Q ss_pred HhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccc-----c-----
Q 011163 360 ELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-----H----- 428 (492)
Q Consensus 360 ~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~-----~----- 428 (492)
.++. .++.++.. + ...+|++||++|++| |.+.+|+|++|+|+|++.- +..+.-.+... .
T Consensus 247 ~~~~~~~v~~~~~---~-~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk-~~pl~~~~~~~~~~~~~~~~~n 316 (385)
T TIGR00215 247 EYGPDLQLHLIDG---D-ARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYR-MKPLTFLIARRLVKTDYISLPN 316 (385)
T ss_pred HhCCCCcEEEECc---h-HHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEc-CCHHHHHHHHHHHcCCeeeccH
Confidence 5422 45554422 2 346899999999999 7788899999999998732 02222111100 0
Q ss_pred --ccccee-eeeecCCCHHHHHHHHHHHhcCH----HHHHHHHHHH
Q 011163 429 --ESTRFS-RFISSTFGNISLSQALEEIKNNP----LSWKRKIKDA 467 (492)
Q Consensus 429 --~~~g~~-G~~~~~~~~~~l~~ai~~~~~~~----~~~~~~~~~a 467 (492)
.+.+.. =++-+..+++.|++.+.++++|+ +.++++.+.-
T Consensus 317 il~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 317 ILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred HhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 000000 02224456789999999999999 7777665543
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.61 E-value=5.3e-15 Score=125.49 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=91.9
Q ss_pred ceEEEEEeccccccCHHHHHH-HHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhc
Q 011163 307 TIVVGCIFSDVSDVFLENLKA-VVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG 383 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~-a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 383 (492)
.+++++.|++.+.|+++.+++ +++++.+. +++|.|+|.+++ +++++ .. .+|.+++.+ +++.++++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~-----~l~~~--~~--~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD-----ELKRL--RR--PNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS------HHCCH--HH--CTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH-----HHHHh--cC--CCEEEcCCH--HHHHHHHHh
Confidence 367999999999999999999 99999753 799999997642 24444 22 589999887 367899999
Q ss_pred CCEEEECCC-CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcC
Q 011163 384 SDIILCHSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 456 (492)
Q Consensus 384 adi~v~pS~-~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~ 456 (492)
||+++.|+. .|+++..++|||++|+|+|+++. +..++++. ...|+++ .+|+++++++|.++++|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~---~~~~~~~~-----~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN---GAEGIVEE-----DGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH---HCHCHS--------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc---chhhheee-----cCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 999999996 78999999999999999999986 35555542 2245666 78999999999999865
No 97
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.60 E-value=3.3e-14 Score=145.86 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=133.7
Q ss_pred eEEEEEe--ccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC--------------------
Q 011163 308 IVVGCIF--SDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-------------------- 363 (492)
Q Consensus 308 ~~i~~~g--rl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~-------------------- 363 (492)
..+++++ |+ ++|.++.+|+|+.++.+ ++++|.+.|.+.+.+..+.+++++++++.
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 3466777 99 99999999999999864 48999999976433445666555444421
Q ss_pred ----------CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccce
Q 011163 364 ----------GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRF 433 (492)
Q Consensus 364 ----------~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~ 433 (492)
++|.|.+..++..+...|..+.++|.+|..|+|+ +.+||++.|+|+| + -|..++|. +|.
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--n---yg~~~~V~-----d~~ 467 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--N---KVETDYVE-----HNK 467 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--e---cCCceeeE-----cCC
Confidence 4777765556556778999999999999999999 9999999999999 3 56689988 578
Q ss_pred eeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchhhHHHHHHHH
Q 011163 434 SRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISA 485 (492)
Q Consensus 434 ~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~--~~fsw~~~a~~~~~~~ 485 (492)
||+++ +|..+|+++|..++.+++.|+++...+.+ ++||-+++.+++ .++
T Consensus 468 NG~li--~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW-~~~ 518 (519)
T TIGR03713 468 NGYII--DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERL-NEL 518 (519)
T ss_pred CcEEe--CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH-Hhh
Confidence 99999 78999999999999999999999998876 899999999884 654
No 98
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.57 E-value=1.1e-14 Score=126.82 Aligned_cols=160 Identities=20% Similarity=0.246 Sum_probs=86.4
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECCeEEEEEccCCCCCC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSF 104 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~ 104 (492)
||+++++.+|+++|.++||+|+|+++........ ...+|++++.++....+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~-- 51 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPRRP-- 51 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-SS--
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCccc--
Confidence 8999999999999999999999999875533211 02467888877531110
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCc
Q 011163 105 FNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHP 184 (492)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~ 184 (492)
.... ... +...+.+++.....+||+||+|++.+++++.++++. .++|+|+|+|+..+....
T Consensus 52 ----~~~~---~~~----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~~-- 112 (160)
T PF13579_consen 52 ----WPLR---LLR----FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRR------RGIPLVVTVHGTLFRRGS-- 112 (160)
T ss_dssp ----SGGG---HCC----HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHH------HT--EEEE-SS-T-------
T ss_pred ----hhhh---hHH----HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHc------cCCcEEEEECCCchhhcc--
Confidence 0110 000 112333333334678999999997665555444322 589999999975321110
Q ss_pred hhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCC
Q 011163 185 DKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG 262 (492)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nG 262 (492)
.+ . ... ...+++..++.||.++++|+..++.+.. ++ .+++++.|||||
T Consensus 113 -~~-------~-------~~~-----~~~~~~~~~~~ad~vi~~S~~~~~~l~~--~g--------~~~~ri~vipnG 160 (160)
T PF13579_consen 113 -RW-------K-------RRL-----YRWLERRLLRRADRVIVVSEAMRRYLRR--YG--------VPPDRIHVIPNG 160 (160)
T ss_dssp --H-------H-------HHH-----HHHHHHHHHHH-SEEEESSHHHHHHHHH--H-----------GGGEEE----
T ss_pred -ch-------h-------hHH-----HHHHHHHHHhcCCEEEECCHHHHHHHHH--hC--------CCCCcEEEeCcC
Confidence 00 0 000 1245678889999999999999988765 33 257899999998
No 99
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.55 E-value=3.6e-14 Score=125.80 Aligned_cols=177 Identities=22% Similarity=0.220 Sum_probs=91.7
Q ss_pred EEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEECC
Q 011163 11 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 90 (492)
Q Consensus 11 Il~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 90 (492)
|+++. .+++ ..||+++++.+|+++|.++||+|+|+++.........
T Consensus 1 ili~~-~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------------------------------- 46 (177)
T PF13439_consen 1 ILITN-IFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE------------------------------- 46 (177)
T ss_dssp -EEEC-C-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-------------------------------
T ss_pred CEEEE-ecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-------------------------------
Confidence 44444 4555 4699999999999999999999999998755432110
Q ss_pred eEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEE
Q 011163 91 IGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIL 170 (492)
Q Consensus 91 v~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (492)
....... . . +...............+.+.+++ .+|||||+|.+......... . .++|+|
T Consensus 47 -~~~~~~~---~-~------~~~~~~~~~~~~~~~~~~~~i~~--~~~DiVh~~~~~~~~~~~~~-~-------~~~~~v 105 (177)
T PF13439_consen 47 -LVKIFVK---I-P------YPIRKRFLRSFFFMRRLRRLIKK--EKPDIVHIHGPPAFWIALLA-C-------RKVPIV 105 (177)
T ss_dssp -EEEE------T-T-------SSTSS--HHHHHHHHHHHHHHH--HT-SEEECCTTHCCCHHHHH-H-------HCSCEE
T ss_pred -ccceeee---e-e------cccccccchhHHHHHHHHHHHHH--cCCCeEEecccchhHHHHHh-c-------cCCCEE
Confidence 0000000 0 0 00011111222333555555654 58999999986554442222 1 278999
Q ss_pred EEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHh
Q 011163 171 LSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLA 250 (492)
Q Consensus 171 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~ 250 (492)
+|+|+.... .... ...... ... .....++...+.+|.+|++|+..++++.. +|
T Consensus 106 ~~~H~~~~~----~~~~---~~~~~~------~~~----~~~~~~~~~~~~~~~ii~vS~~~~~~l~~--~~-------- 158 (177)
T PF13439_consen 106 YTIHGPYFE----RRFL---KSKLSP------YSY----LNFRIERKLYKKADRIIAVSESTKDELIK--FG-------- 158 (177)
T ss_dssp EEE-HHH------HHTT---TTSCCC------HHH----HHHCTTHHHHCCSSEEEESSHHHHHHHHH--HT--------
T ss_pred EEeCCCccc----cccc---ccccch------hhh----hhhhhhhhHHhcCCEEEEECHHHHHHHHH--hC--------
Confidence 999975321 0000 000000 000 01123445578899999999999988765 33
Q ss_pred hhcCCeeeecCCCCCCCcC
Q 011163 251 IHQDKLLVAPCGFDSSTWD 269 (492)
Q Consensus 251 ~~~~~~~vI~nGvd~~~f~ 269 (492)
.++.++.|||||||++.|+
T Consensus 159 ~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 159 IPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp --SS-EEE----B-CCCH-
T ss_pred CcccCCEEEECCccHHHcC
Confidence 2568999999999998763
No 100
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-11 Score=111.79 Aligned_cols=388 Identities=13% Similarity=0.089 Sum_probs=227.0
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEE
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 86 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
.+-+|+.|.-. .. |=...+..-|..|++.|.+|.++....+...+. +.
T Consensus 11 ~k~ra~vvVLG-----Dv-GRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~----l~---------------------- 58 (444)
T KOG2941|consen 11 KKKRAIVVVLG-----DV-GRSPRMQYHALSLAKLGFQVDLIGYVESIPLEE----LL---------------------- 58 (444)
T ss_pred ccceEEEEEec-----cc-CCChHHHHHHHHHHHcCCeEEEEEecCCCChHH----Hh----------------------
Confidence 33456555542 12 334456677889999999999998754422111 10
Q ss_pred EECCeEEEEEccCCCCCCccC-CCCCCCCChhHHHHHHHHHHHHHHHH--cCCCCCEEEEcCchh--hhHHHHHHHHHhh
Q 011163 87 VVSGIGVTFIQPLHYSSFFNR-ESVYGYSDDFERFTYFSRASLDYIVK--SRKQPDVLHIHNWET--AIVGPLFWDIFVK 161 (492)
Q Consensus 87 ~~~gv~v~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pDiVh~h~~~~--~~~~~~~~~~~~~ 161 (492)
..++++++-+... .+... .+...+. +..| ...+.+++. ....+|+|-+++.++ .++.+.+...
T Consensus 59 ~hprI~ih~m~~l---~~~~~~p~~~~l~-----lKvf-~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~--- 126 (444)
T KOG2941|consen 59 NHPRIRIHGMPNL---PFLQGGPRVLFLP-----LKVF-WQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSI--- 126 (444)
T ss_pred cCCceEEEeCCCC---cccCCCchhhhhH-----HHHH-HHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHH---
Confidence 1245666655432 12111 0111000 1111 111112221 146899999998432 2222222222
Q ss_pred cCCCCCcEEEEecCCCCCCCCCchhhh-hcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcc
Q 011163 162 QGLEGTRILLSCHNLNSLCLEHPDKLA-LCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 240 (492)
Q Consensus 162 ~~~~~~~~v~t~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~ 240 (492)
+.+.+.++..|+..|.- .+. ..|.... + +.. ....++..-+.||.-.||++.+++++.++-
T Consensus 127 --l~~~KfiIDWHNy~Ysl-----~l~~~~g~~h~-l-----V~l-----~~~~E~~fgk~a~~nLcVT~AMr~dL~qnW 188 (444)
T KOG2941|consen 127 --LTGAKFIIDWHNYGYSL-----QLKLKLGFQHP-L-----VRL-----VRWLEKYFGKLADYNLCVTKAMREDLIQNW 188 (444)
T ss_pred --HhcceEEEEehhhHHHH-----HHHhhcCCCCc-h-----HHH-----HHHHHHHhhcccccchhhHHHHHHHHHHhc
Confidence 36889999999865420 111 1121110 0 100 113355566889999999999998887642
Q ss_pred cCCCccHHHhhhcCCeeeecCCCC-----CC----CcCCCCCcccccccCccCccChHHHHHHHHHHhC---CCC-CCCc
Q 011163 241 LSHGLESTLAIHQDKLLVAPCGFD-----SS----TWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLG---LSK-DAST 307 (492)
Q Consensus 241 ~~~~l~~~~~~~~~~~~vI~nGvd-----~~----~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg---~~~-~~~~ 307 (492)
| -.+..|+|.--. .+ .|.+-..++. .|.+...+.+..++..+-++.. ... ....
T Consensus 189 -g----------i~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~--~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~p 255 (444)
T KOG2941|consen 189 -G----------INRAKVLYDRPPSKPTPLDEQHELFMKLAGDHS--PFRAREPQDKALERTAFTKKDASGDVQLLPERP 255 (444)
T ss_pred -C----------CceeEEEecCCCCCCCchhHHHHHHhhhccccc--hhhhcccccchhhhhhHhhhcccchhhhccCCC
Confidence 1 024455553222 11 1222111110 1222222344444444444433 100 1223
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHh----Hc-----CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEe-ccCHHHH
Q 011163 308 IVVGCIFSDVSDVFLENLKAVVRGAK----MR-----GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD-SYDDALL 377 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~~~l~----~~-----~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~ 377 (492)
.+++..-.+++..++..|++|+.... .. .+-++|-|.|| +.+...+.+++++..+|.+.. ....++.
T Consensus 256 allvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP---lkE~Y~~~I~~~~~~~v~~~tpWL~aEDY 332 (444)
T KOG2941|consen 256 ALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP---LKEKYSQEIHEKNLQHVQVCTPWLEAEDY 332 (444)
T ss_pred eEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc---hhHHHHHHHHHhcccceeeeecccccccc
Confidence 46777778999999999999997332 11 34555666554 456666667776556776644 4467888
Q ss_pred HHHHhcCCEEEE--CCC-CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHh
Q 011163 378 HLIFSGSDIILC--HSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 454 (492)
Q Consensus 378 ~~~~~~adi~v~--pS~-~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~ 454 (492)
+.+++.||+.|. +|. -=-.||-++.-.-||+||+|.+- .-+.|+|.+ |+||++|+ |.++|++.+..+.
T Consensus 333 P~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~f--kcl~ELVkh-----~eNGlvF~--Ds~eLa~ql~~lf 403 (444)
T KOG2941|consen 333 PKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNF--KCLDELVKH-----GENGLVFE--DSEELAEQLQMLF 403 (444)
T ss_pred hhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecc--hhHHHHHhc-----CCCceEec--cHHHHHHHHHHHH
Confidence 999999998664 333 33567888999999999999998 668888984 67899995 7779999999988
Q ss_pred c----CHHHHHHHHHHHHh-ccCCchhhHHHH
Q 011163 455 N----NPLSWKRKIKDAML-QDFSWDADCNDI 481 (492)
Q Consensus 455 ~----~~~~~~~~~~~a~~-~~fsw~~~a~~~ 481 (492)
+ +.+.+.++.+++++ +..+|+..-+++
T Consensus 404 ~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 404 KNFPDNADELNQLKKNLREEQELRWDESWERT 435 (444)
T ss_pred hcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHh
Confidence 7 78888899888887 678888877764
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.39 E-value=1e-09 Score=108.39 Aligned_cols=166 Identities=13% Similarity=0.060 Sum_probs=90.0
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEecc
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY 372 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~ 372 (492)
..++.+++.++ .++++.+|--..-+.+.. +.+++..+. .++++++.- |.+ .+++.+.. . .++... ++
T Consensus 174 ~~~~~~~l~~~--~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~-G~~-~~~~~~~~----~--~~~~~~-~f 241 (352)
T PRK12446 174 KGLAFLGFSRK--KPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLC-GKG-NLDDSLQN----K--EGYRQF-EY 241 (352)
T ss_pred HHHHhcCCCCC--CcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEe-CCc-hHHHHHhh----c--CCcEEe-cc
Confidence 44567777654 344554543333333422 333444443 257766653 332 23332222 2 132323 44
Q ss_pred CHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc---ccccccccccceeeeeec--CCCHHHHH
Q 011163 373 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR---HFAEFDHESTRFSRFISS--TFGNISLS 447 (492)
Q Consensus 373 ~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~---e~v~~~~~~~g~~G~~~~--~~~~~~l~ 447 (492)
-.+.+..+|+.||++|.- +-+.++.|++++|+|.|..... .... +...-......+.|..+. ..+++.|.
T Consensus 242 ~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~-~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~ 316 (352)
T PRK12446 242 VHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLS-KFASRGDQILNAESFERQGYASVLYEEDVTVNSLI 316 (352)
T ss_pred hhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCC-CCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHH
Confidence 334567899999999955 4578999999999999997541 0111 111100000112244443 33578999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCchhhHHHH
Q 011163 448 QALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDI 481 (492)
Q Consensus 448 ~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~ 481 (492)
+++..+++|++.+++.. +++...+.++++
T Consensus 317 ~~l~~ll~~~~~~~~~~-----~~~~~~~aa~~i 345 (352)
T PRK12446 317 KHVEELSHNNEKYKTAL-----KKYNGKEAIQTI 345 (352)
T ss_pred HHHHHHHcCHHHHHHHH-----HHcCCCCHHHHH
Confidence 99999999987764322 235555666664
No 102
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.31 E-value=8.6e-11 Score=102.76 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=114.9
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
||++|.+.-.|. ..||.|+++.+|+..|+++||+|+|.|......... ..++
T Consensus 3 kIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~---------------------------~~y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE---------------------------FEYN 54 (185)
T ss_pred eEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC---------------------------cccC
Confidence 799999998885 679999999999999999999999999754321111 0257
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHH---HHcCCCCCEEEEcCch-hhhHHHHHHHHHhhcCCC
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYI---VKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLE 165 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pDiVh~h~~~-~~~~~~~~~~~~~~~~~~ 165 (492)
|+++..++.. ..+ ....+.+...++...+ +..+.+.||||++... .+++..++ +.+ +..
T Consensus 55 gv~l~~i~~~-------~~g------~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~-r~~---~~~ 117 (185)
T PF09314_consen 55 GVRLVYIPAP-------KNG------SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFL-RKL---RKK 117 (185)
T ss_pred CeEEEEeCCC-------CCC------chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHH-Hhh---hhc
Confidence 8888877521 111 1122223333444433 2223468999999865 34443434 221 125
Q ss_pred CCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCc
Q 011163 166 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 245 (492)
Q Consensus 166 ~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l 245 (492)
|.|+++++|+.++.. .+| +.. .+.| ...-++.+++.||.+|+.|+.+.+.+..++ +
T Consensus 118 g~~v~vN~DGlEWkR----~KW---~~~---------~k~~----lk~~E~~avk~ad~lIaDs~~I~~y~~~~y-~--- 173 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKR----AKW---GRP---------AKKY----LKFSEKLAVKYADRLIADSKGIQDYIKERY-G--- 173 (185)
T ss_pred CCcEEECCCcchhhh----hhc---CHH---------HHHH----HHHHHHHHHHhCCEEEEcCHHHHHHHHHHc-C---
Confidence 779999999876532 111 111 0110 123467788999999999999988776532 1
Q ss_pred cHHHhhhcCCeeeecCCCC
Q 011163 246 ESTLAIHQDKLLVAPCGFD 264 (492)
Q Consensus 246 ~~~~~~~~~~~~vI~nGvd 264 (492)
..+..+|++|.|
T Consensus 174 -------~~~s~~IaYGad 185 (185)
T PF09314_consen 174 -------RKKSTFIAYGAD 185 (185)
T ss_pred -------CCCcEEecCCCC
Confidence 267899999986
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.30 E-value=1.9e-09 Score=108.01 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCC
Q 011163 122 YFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPD 201 (492)
Q Consensus 122 ~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
..++.+.+.+.+.-..-|+|-+|+++-.++|.++++. ....++-+.+|-..+. .+.+..+..
T Consensus 108 ~VN~~FA~~v~~~~~~~D~VWVHDYhL~llp~~LR~~-----~~~~~IgFFlHiPFPs----~eifr~LP~--------- 169 (474)
T PRK10117 108 RVNALLADKLLPLLKDDDIIWIHDYHLLPFASELRKR-----GVNNRIGFFLHIPFPT----PEIFNALPP--------- 169 (474)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeccHhhHHHHHHHHh-----CCCCcEEEEEeCCCCC----hHHHhhCCC---------
Confidence 3344455444443234589999999999999988653 2577999999964221 111111111
Q ss_pred cccCCCCCccchhhHHHHhhcCceeccCccchhhhhhc---ccCCCccH--HHh--hhcCCeeeecCCCCCCCcCCCCCc
Q 011163 202 RLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLES--TLA--IHQDKLLVAPCGFDSSTWDPSNDK 274 (492)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~~l~~--~~~--~~~~~~~vI~nGvd~~~f~p~~~~ 274 (492)
..-+-.++-.+|.|-.-+..+++..... ..+..... ... -..-++.+.|-|||.+.|.....
T Consensus 170 ----------r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~- 238 (474)
T PRK10117 170 ----------HDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAA- 238 (474)
T ss_pred ----------hHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhh-
Confidence 0112233444555555555544433221 00000000 000 01234677888999776643210
Q ss_pred ccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecCC--
Q 011163 275 FLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK-- 346 (492)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g~-- 346 (492)
........+++++++ +..+|+.+-|++.-||+..=++||+++.+. ++.|+-+....
T Consensus 239 -----------~~~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~ 302 (474)
T PRK10117 239 -----------GPLPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG 302 (474)
T ss_pred -----------chHHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCC
Confidence 001112345666664 235788999999999999999999998752 56677665321
Q ss_pred C----hhHHHHHHHHHHHhCC-----C--eEEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCC-----c
Q 011163 347 L----PSASRALVSFQEELKD-----G--IVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA-----A 409 (492)
Q Consensus 347 ~----~~~~~~l~~~~~~~~~-----~--~v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~-----P 409 (492)
+ .++..++.+++.+.+. + -|+++ ..++.+++..+|+.||+++.+|..+|.-+|..|..||.. .
T Consensus 303 ~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~Gv 382 (474)
T PRK10117 303 DVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGV 382 (474)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCcc
Confidence 1 2345566666665542 1 23433 356788888999999999999999999999999999854 2
Q ss_pred eEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCH
Q 011163 410 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 457 (492)
Q Consensus 410 vV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~ 457 (492)
.|.|.- .|.++... + .+++.|.|.++++++|...++-|
T Consensus 383 LILSef--AGaA~~L~------~--AllVNP~d~~~~A~Ai~~AL~Mp 420 (474)
T PRK10117 383 LVLSQF--AGAANELT------S--ALIVNPYDRDEVAAALDRALTMP 420 (474)
T ss_pred EEEecc--cchHHHhC------C--CeEECCCCHHHHHHHHHHHHcCC
Confidence 777776 55665553 1 38999999999999999999844
No 104
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.28 E-value=1.1e-11 Score=97.42 Aligned_cols=87 Identities=22% Similarity=0.220 Sum_probs=77.7
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIK 465 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~ 465 (492)
+++.|+..+++++..+|+||||+|+|+.+. +++.+++. +|.++++++ |++++.+++..+++||+.++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~--~~~~~~~~-----~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~ 71 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDS--PGLREIFE-----DGEHIITYN--DPEELAEKIEYLLENPEERRRIAK 71 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECCh--HHHHHHcC-----CCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHH
Confidence 467789899999999999999999999988 88999876 355678876 999999999999999999999999
Q ss_pred HHHh---ccCCchhhHHHH
Q 011163 466 DAML---QDFSWDADCNDI 481 (492)
Q Consensus 466 ~a~~---~~fsw~~~a~~~ 481 (492)
+|+. ++|||+..++++
T Consensus 72 ~a~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 72 NARERVLKRHTWEHRAEQI 90 (92)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9976 799999999985
No 105
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.28 E-value=1e-09 Score=111.31 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchh-hhhcCCCccccCCC
Q 011163 122 YFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDK-LALCGLDPARLHRP 200 (492)
Q Consensus 122 ~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~-~~~~~~~~~~~~~~ 200 (492)
...+.....+.+.-..-|+|-+|+++-.++|.++++. ..+.++.+.+|... |... +..+..
T Consensus 126 ~vN~~FA~~i~~~~~~~D~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiPF-----Ps~e~fr~lP~-------- 187 (474)
T PF00982_consen 126 RVNRRFADAIAEVYRPGDLVWVHDYHLMLLPQMLRER-----GPDARIGFFLHIPF-----PSSEIFRCLPW-------- 187 (474)
T ss_dssp HHHHHHHHHHGGG--TT-EEEEESGGGTTHHHHHHHT-----T--SEEEEEE-S---------HHHHTTSTT--------
T ss_pred HHHHHHHHHHHHhCcCCCEEEEeCCcHHHHHHHHHhh-----cCCceEeeEEecCC-----CCHHHHhhCCc--------
Confidence 3345555555543346799999999999999998764 36789999999642 2211 111110
Q ss_pred CcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhc---ccCCCccH---HHh--hhcCCeeeecCCCCCCCcCCCC
Q 011163 201 DRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLES---TLA--IHQDKLLVAPCGFDSSTWDPSN 272 (492)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~~l~~---~~~--~~~~~~~vI~nGvd~~~f~p~~ 272 (492)
..-+-.++-.||.|-.-+..+++..... ..|..... .+. -+.-++.+.|-|||.+.|....
T Consensus 188 -----------r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~ 256 (474)
T PF00982_consen 188 -----------REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLA 256 (474)
T ss_dssp -----------HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHH
T ss_pred -----------HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhc
Confidence 1222344455676666666665544321 11100000 000 0122466778888876543210
Q ss_pred CcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecCC
Q 011163 273 DKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK 346 (492)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g~ 346 (492)
. + ..-.+....++++++- +..+|+.+.|++..||+..=++||+++.+. ++.|+-++...
T Consensus 257 ~-------~----~~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~ps 321 (474)
T PF00982_consen 257 R-------S----PEVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPS 321 (474)
T ss_dssp H------------S---HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-
T ss_pred c-------C----hHHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeecc
Confidence 0 0 0011234567777742 247889999999999999999999998752 56777666321
Q ss_pred --C-h---hHHHHHHHHHHHhC----C-C--eEEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCc---
Q 011163 347 --L-P---SASRALVSFQEELK----D-G--IVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA--- 409 (492)
Q Consensus 347 --~-~---~~~~~l~~~~~~~~----~-~--~v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~P--- 409 (492)
+ + ++.+++.+++.+.+ . + -|.++ ..++.+++..+|+.||+++.+|..+|.-++..|..+|...
T Consensus 322 r~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~G 401 (474)
T PF00982_consen 322 REDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPG 401 (474)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCC
Confidence 1 2 34456666665443 1 1 24444 4578888999999999999999999999999999988654
Q ss_pred -eEEEecCCCcccccccccccccceee-eeecCCCHHHHHHHHHHHhcCH
Q 011163 410 -PIAVTSSDIEFRHFAEFDHESTRFSR-FISSTFGNISLSQALEEIKNNP 457 (492)
Q Consensus 410 -vV~~~~~~gg~~e~v~~~~~~~g~~G-~~~~~~~~~~l~~ai~~~~~~~ 457 (492)
+|.|.- .|..+...+ | +++.|-|.++++++|...++-+
T Consensus 402 vLiLSef--aGaa~~L~~--------~al~VNP~d~~~~A~ai~~AL~M~ 441 (474)
T PF00982_consen 402 VLILSEF--AGAAEQLSE--------AALLVNPWDIEEVADAIHEALTMP 441 (474)
T ss_dssp EEEEETT--BGGGGT-TT--------S-EEE-TT-HHHHHHHHHHHHT--
T ss_pred ceEeecc--CCHHHHcCC--------ccEEECCCChHHHHHHHHHHHcCC
Confidence 677776 666665531 3 8999999999999999999844
No 106
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=2.5e-08 Score=97.56 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=92.3
Q ss_pred ceEEEEEeccccccCHHHHHHHH-HHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVV-RGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~-~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
.++++.+|--..-+.+..++... ..+. ++++++... |.+ . .++++..-.+++ . +... +|.++ +..+|+.||
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~-~~~~v~~~~-G~~-~-~~~~~~~~~~~~-~-~~v~-~f~~d-m~~~~~~AD 254 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLA-NRIQVIHQT-GKN-D-LEELKSAYNELG-V-VRVL-PFIDD-MAALLAAAD 254 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhh-hCeEEEEEc-Ccc-h-HHHHHHHHhhcC-c-EEEe-eHHhh-HHHHHHhcc
Confidence 35555555433222233333333 2332 256766665 432 2 333443333332 2 4433 55444 578999999
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc-ccc-cccccccceeeeeecCCC--HHHHHHHHHHHhcCHHHHH
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HFA-EFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~-e~v-~~~~~~~g~~G~~~~~~~--~~~l~~ai~~~~~~~~~~~ 461 (492)
+++ |+ +-++++-|..++|+|.|.-..+ .+.. +.. ......+.+.|.+++..+ ++.+.+.|..++++|+.++
T Consensus 255 LvI--sR--aGa~Ti~E~~a~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~ 329 (357)
T COG0707 255 LVI--SR--AGALTIAELLALGVPAILVPYP-PGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLK 329 (357)
T ss_pred EEE--eC--CcccHHHHHHHhCCCEEEeCCC-CCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 999 55 4479999999999999997762 2211 111 100001122356666555 7899999999999999999
Q ss_pred HHHHHHHhccCCchhhHHH
Q 011163 462 RKIKDAMLQDFSWDADCND 480 (492)
Q Consensus 462 ~~~~~a~~~~fsw~~~a~~ 480 (492)
+|.+++.. +.-...+++
T Consensus 330 ~m~~~a~~--~~~p~aa~~ 346 (357)
T COG0707 330 AMAENAKK--LGKPDAAER 346 (357)
T ss_pred HHHHHHHh--cCCCCHHHH
Confidence 99988764 333344444
No 107
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.24 E-value=2.3e-10 Score=114.87 Aligned_cols=127 Identities=14% Similarity=0.193 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHH
Q 011163 323 ENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 400 (492)
Q Consensus 323 ~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~ 400 (492)
+.+|++++++.+ ++++|-| |.+. +..++|.++ +++ ++++.+.++....+.++|..||+++..|..|++++++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t--e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT--EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC--cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHH
Confidence 789999999976 4899999 7653 345778888 666 5777788888867789999999999999999999999
Q ss_pred HHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHH
Q 011163 401 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKI 464 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~ 464 (492)
+||+..|+|+++.+.. -|..+++. + |.+|+.+++++|+++|..++.|++.+++..
T Consensus 365 ~eA~~~G~pI~afd~t-~~~~~~i~-----~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~ 419 (438)
T TIGR02919 365 RRAFEYNLLILGFEET-AHNRDFIA-----S---ENIFEHNEVDQLISKLKDLLNDPNQFRELL 419 (438)
T ss_pred HHHHHcCCcEEEEecc-cCCccccc-----C---CceecCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999973 45556664 2 689999999999999999999998766543
No 108
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=9.8e-09 Score=106.53 Aligned_cols=412 Identities=14% Similarity=0.081 Sum_probs=242.5
Q ss_pred ccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCc---------cccc--------cc---c---eeeeeeeeecC
Q 011163 19 DPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNL---------DGVQ--------GL---R---EIKAECYSYFN 75 (492)
Q Consensus 19 ~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~---------~~~~--------~~---~---~~~~~~~~~~~ 75 (492)
-|... ||+|+........++..|...+.++..|....- .+.+ +. + -.+.+..+...
T Consensus 110 ~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~ 188 (750)
T COG0058 110 DPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGY 188 (750)
T ss_pred Ccccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEec
Confidence 35445 999999999999999999999999876654211 0000 00 1 03345556556
Q ss_pred C-eeeEEEEEEEEECCeEEEEEccCCCCCC--ccC---CCCCCCCChhHHH---HHHHHHHHHHHHHcC------CCCCE
Q 011163 76 G-QLHANKIWIGVVSGIGVTFIQPLHYSSF--FNR---ESVYGYSDDFERF---TYFSRASLDYIVKSR------KQPDV 140 (492)
Q Consensus 76 ~-~~~~~~~~~~~~~gv~v~~i~~~~~~~~--~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~pDi 140 (492)
+ +...++.|......+++++.+.- .+.- ..+ ..+|+-..+..|+ .++..+.++.+.++. .++..
T Consensus 189 ~~~~~~lrlW~a~~~~~~~~l~~~n-~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~~~~~~~~~ 267 (750)
T COG0058 189 DNRVVTLRLWQAQVGRVPLYLLDFN-VGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLEHHDLDVLA 267 (750)
T ss_pred cCcEEEEEEEEEecCccceEeecCC-CcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhccccccchh
Confidence 6 66777888887777788877631 1100 000 1133211133333 345555666555542 56667
Q ss_pred EEEcCchhhhHHHHHHH-HHhhcCC--------CCCcEEEEecCCCCCC--CCCchhhhh-cCCCccccCC-----C--C
Q 011163 141 LHIHNWETAIVGPLFWD-IFVKQGL--------EGTRILLSCHNLNSLC--LEHPDKLAL-CGLDPARLHR-----P--D 201 (492)
Q Consensus 141 Vh~h~~~~~~~~~~~~~-~~~~~~~--------~~~~~v~t~H~~~~~~--~~~~~~~~~-~~~~~~~~~~-----~--~ 201 (492)
-|.++-|++++..-+-+ ...+.++ ...-+++|.|+....+ .+|.+.+.. ++.-...... . .
T Consensus 268 ~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~ 347 (750)
T COG0058 268 DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEV 347 (750)
T ss_pred hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHH
Confidence 88888777666433323 1111100 2346799999976544 234333321 1100000000 0 0
Q ss_pred cccCC----CCCcc---chhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCc
Q 011163 202 RLQDN----TKTHL---VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK 274 (492)
Q Consensus 202 ~~~~~----~~~~~---~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~ 274 (492)
+.... ...+. +++.-.++..|..|..||.-+.+-+....+.. .....+.++.-+.|||...+|.....+
T Consensus 348 ~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~----~~~~~p~~i~nvTNGIt~rrWl~~~n~ 423 (750)
T COG0058 348 RLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFAD----FHGLYPEKINNVTNGITPRRWLAPANP 423 (750)
T ss_pred HhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHHH----hcccCccccccccCCcCCchhhhhhhH
Confidence 00000 00011 45556677888888999987766443321110 011136789999999998887432222
Q ss_pred ccccccCccC--------------------------cc-ChHHHHH----HHHHHhCCCCCCCceEEEEEeccccccCHH
Q 011163 275 FLTENYCAED--------------------------MK-GKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLE 323 (492)
Q Consensus 275 ~~~~~~~~~~--------------------------~~-~~~~~~~----~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~ 323 (492)
.+..-++... +. -|..++. ....+.|+..+++.++++++-|+.++|..+
T Consensus 424 ~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~ 503 (750)
T COG0058 424 GLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQL 503 (750)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhhH
Confidence 2222222110 00 1111221 233457777777889999999999999988
Q ss_pred HHHHHHHHHhH-------cCcEEEEEecCCCh------hHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEE
Q 011163 324 NLKAVVRGAKM-------RGIQFVFTGTNKLP------SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILC 389 (492)
Q Consensus 324 ~li~a~~~l~~-------~~~~lvivG~g~~~------~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~ 389 (492)
+.+.-...+.+ ..+++++.|. ..| .....+...++..+. .+|.|+..|+-.....++.+||+-..
T Consensus 504 Lnl~~i~~ly~~i~~d~~prv~~iFaGK-AhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweq 582 (750)
T COG0058 504 LNLLDIERLYRILKEDWVPRVQIIFAGK-AHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQ 582 (750)
T ss_pred HhHhhHHHHHHHHhcCCCCceEEEEecc-CCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhccccccccc
Confidence 87765555442 1255566663 222 222344444555332 68999999998888899999999999
Q ss_pred CCC--CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCC
Q 011163 390 HSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFG 442 (492)
Q Consensus 390 pS~--~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~ 442 (492)
.|. .|++|.+-|.||..|.+.|+|-. |+-.|+.++. .+.|||+|....
T Consensus 583 is~a~~EASGTsnMK~alNGaltigtlD--GanvEi~e~v---g~~N~~~fG~~~ 632 (750)
T COG0058 583 IPTAGKEASGTSNMKAALNGALTLGTLD--GANVEIYEHV---GGENGWIFGETV 632 (750)
T ss_pred CCCCCccccCcCcchHHhcCCceeeccc--cHHHHHHHhc---CCCceEEeCCch
Confidence 986 79999999999999999999999 9999987642 467899996544
No 109
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=3.2e-08 Score=98.78 Aligned_cols=285 Identities=10% Similarity=0.086 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCC
Q 011163 120 FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHR 199 (492)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (492)
+....++..+.+.+.-..=|+|-+|+++-.++|.+++.. ....++.+++|-..+. .+.+..+...
T Consensus 130 Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~P~mlR~~-----~~~~~IgfFlHiPfPs----sEvfr~lP~r------ 194 (486)
T COG0380 130 YVKVNRKFADKIVEIYEPGDIIWVHDYHLLLVPQMLRER-----IPDAKIGFFLHIPFPS----SEVFRCLPWR------ 194 (486)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEechhhhhHHHHHHh-----CCCceEEEEEeCCCCC----HHHHhhCchH------
Confidence 333445555555543344599999999999999998654 3567899999953221 1111111110
Q ss_pred CCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhc---ccC-CCccHH-Hh---hhcCCeeeecCCCCCCCcCCC
Q 011163 200 PDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLS-HGLEST-LA---IHQDKLLVAPCGFDSSTWDPS 271 (492)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~-~~l~~~-~~---~~~~~~~vI~nGvd~~~f~p~ 271 (492)
.-+..++-.||.|-.-++.+++..... ..+ .+...+ .. -...++..+|-|||...|...
T Consensus 195 -------------~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~ 261 (486)
T COG0380 195 -------------EEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERA 261 (486)
T ss_pred -------------HHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHh
Confidence 112233344555555555554433211 000 000000 00 012456778889997766432
Q ss_pred CCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecC
Q 011163 272 NDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTN 345 (492)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g 345 (492)
... . .-...-.++++.++-+ ..+|+++-|++.-||+..=+.||+++... ++.|+-++..
T Consensus 262 ~~~-------~----~v~~~~~el~~~~~~~----~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~p 326 (486)
T COG0380 262 LKS-------P----SVQEKVLELKAELGRN----KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPP 326 (486)
T ss_pred hcC-------C----chhhHHHHHHHHhcCC----ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCC
Confidence 100 0 0001334566666532 46888999999999999999999999852 5666666633
Q ss_pred C--C-hh---HHHHHHHHHHHhCC-------CeEEEEe-ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcC----
Q 011163 346 K--L-PS---ASRALVSFQEELKD-------GIVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG---- 407 (492)
Q Consensus 346 ~--~-~~---~~~~l~~~~~~~~~-------~~v~~~~-~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G---- 407 (492)
. + ++ +...+++++.+.++ .-|.++. ..+.+++..+|+.||+++.+|..||.-+|..|.-+|.
T Consensus 327 Sr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~ 406 (486)
T COG0380 327 SREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKP 406 (486)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCC
Confidence 2 1 22 34455555554431 2344443 4678888999999999999999999999999998763
Q ss_pred CceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCH
Q 011163 408 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 457 (492)
Q Consensus 408 ~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~ 457 (492)
-+.|.|.- .|....+.. -+++.|-|.+.++++|...++-+
T Consensus 407 G~LiLSeF--aGaa~~L~~--------AliVNP~d~~~va~ai~~AL~m~ 446 (486)
T COG0380 407 GVLILSEF--AGAASELRD--------ALIVNPWDTKEVADAIKRALTMS 446 (486)
T ss_pred CcEEEecc--ccchhhhcc--------CEeECCCChHHHHHHHHHHhcCC
Confidence 35777775 444444431 38999999999999999999733
No 110
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.13 E-value=2.6e-08 Score=107.86 Aligned_cols=266 Identities=9% Similarity=0.038 Sum_probs=166.6
Q ss_pred CEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhh-hhcCCCccccCCCCcccCCCCCccchhhHH
Q 011163 139 DVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDRLQDNTKTHLVNILKG 217 (492)
Q Consensus 139 DiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (492)
|+|-+|+++-.++|.++++. ....++-+.+|... |...+ ..+.. ..-+-.
T Consensus 203 d~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiPF-----Ps~eifr~LP~-------------------r~eiL~ 253 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKR-----FNRVKLGFFLHSPF-----PSSEIYKTLPI-------------------REELLR 253 (854)
T ss_pred CEEEEeCchhhHHHHHHHhh-----CCCCcEEEEecCCC-----CChHHHhhCCc-------------------HHHHHH
Confidence 89999999999999988654 36789999999642 22111 11110 112223
Q ss_pred HHhhcCceeccCccchhhhhhc---ccCCCccH---HHhh----hcCCeeeecCCCCCCCcCCCCCcccccccCccCccC
Q 011163 218 GVVYSNKVVIVSSMHSKGRIIR---SLSHGLES---TLAI----HQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKG 287 (492)
Q Consensus 218 ~~~~ad~vi~vS~~~~~~~~~~---~~~~~l~~---~~~~----~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~ 287 (492)
++-.||.|-.-+..+++..... ..|..... ...+ +.-++.+.|-|||.+.|...... ..
T Consensus 254 glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~-----------~~ 322 (854)
T PLN02205 254 ALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSL-----------PE 322 (854)
T ss_pred HHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcC-----------hh
Confidence 4445666666555555443321 01100000 0000 12246678888887665322100 01
Q ss_pred hHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc------CcEEEEEecC-----CC-hhHHHHHH
Q 011163 288 KTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTN-----KL-PSASRALV 355 (492)
Q Consensus 288 ~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~------~~~lvivG~g-----~~-~~~~~~l~ 355 (492)
......+++++++- ++..+++.+-|++.-||+..=+.||+++.+. ++.|+-+... ++ .++..++.
T Consensus 323 ~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~ 399 (854)
T PLN02205 323 TEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETH 399 (854)
T ss_pred HHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHH
Confidence 11234567777752 1346889999999999999999999998752 4566655521 11 23444556
Q ss_pred HHHHHhCC-------CeEEEE-eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCC-------------------
Q 011163 356 SFQEELKD-------GIVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA------------------- 408 (492)
Q Consensus 356 ~~~~~~~~-------~~v~~~-~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~------------------- 408 (492)
+++.+.+. .-|+++ ..++.+++.++|+.||+++.+|..+|.-++..|..+|..
T Consensus 400 ~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~g 479 (854)
T PLN02205 400 STVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKS 479 (854)
T ss_pred HHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCC
Confidence 66655431 234554 456878888999999999999999999999999998743
Q ss_pred ceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCH
Q 011163 409 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 457 (492)
Q Consensus 409 PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~ 457 (492)
..|.|.- .|...... | -+++.|-|.+++++||...++-+
T Consensus 480 vLiLSEf--aGaa~~L~------~--Ai~VNP~d~~~~a~ai~~AL~m~ 518 (854)
T PLN02205 480 MLVVSEF--IGCSPSLS------G--AIRVNPWNIDAVADAMDSALEMA 518 (854)
T ss_pred ceEeeec--cchhHHhC------c--CeEECCCCHHHHHHHHHHHHcCC
Confidence 2555554 34444332 1 38999999999999999999854
No 111
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.04 E-value=2.6e-07 Score=97.51 Aligned_cols=220 Identities=18% Similarity=0.150 Sum_probs=146.1
Q ss_pred cchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcC----CCCCcccccccC-----
Q 011163 211 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWD----PSNDKFLTENYC----- 281 (492)
Q Consensus 211 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~----p~~~~~~~~~~~----- 281 (492)
.+++...++..|..|..||.-+.+-+....+. ......++++.-+.|||...+|- |.-...+.....
T Consensus 407 ~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~----df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~ 482 (797)
T cd04300 407 QVRMAHLAIVGSHSVNGVAALHSELLKETVFK----DFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVT 482 (797)
T ss_pred EEehHHHHHhcCcchhhhHHHHHHHHHHhhHH----HHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhh
Confidence 46777888899999999998776544432111 11223468889999999987774 221111111000
Q ss_pred -----------ccC------c-cChHHHHH----HHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHHHHH---HhHc
Q 011163 282 -----------AED------M-KGKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRG---AKMR 335 (492)
Q Consensus 282 -----------~~~------~-~~~~~~~~----~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a~~~---l~~~ 335 (492)
.+| + +-+..+|. .++++.|+..+++.+..+++-|+.++|...+ ++..+.+ +++.
T Consensus 483 d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~ 562 (797)
T cd04300 483 DLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKEN 562 (797)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhC
Confidence 111 1 11222222 3566788888888889999999999999888 6666544 4432
Q ss_pred ------CcEEEEEecCCChhH------HHHHHHHHHHhC-----CC--eEEEEeccCHHHHHHHHhcCCEEEECCC--CC
Q 011163 336 ------GIQFVFTGTNKLPSA------SRALVSFQEELK-----DG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HD 394 (492)
Q Consensus 336 ------~~~lvivG~g~~~~~------~~~l~~~~~~~~-----~~--~v~~~~~~~~~~~~~~~~~adi~v~pS~--~E 394 (492)
+.++++.|. ..|.+ ...+..+++..+ .+ +|.|+..|+-.....++.+||+...-|. .|
T Consensus 563 p~~~~~P~~~IFaGK-AaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~E 641 (797)
T cd04300 563 PNADIVPRTFIFGGK-AAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKE 641 (797)
T ss_pred CCcCCCCeEEEEecc-CCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCcc
Confidence 356777773 22211 223333333211 13 7999999998888899999999999987 79
Q ss_pred CCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 395 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 395 ~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
++|.+-|-+|.-|.+.++|-. |+-.|+.+.. -++|+|+|..
T Consensus 642 ASGTsnMK~~lNGaltlgtlD--GanvEi~e~v---G~eN~fiFG~ 682 (797)
T cd04300 642 ASGTGNMKFMLNGALTIGTLD--GANVEIAEEV---GEENIFIFGL 682 (797)
T ss_pred ccCCchhhHHhcCceeeeccc--chhHHHHHHh---CcCcEEEeCC
Confidence 999999999999999999999 9999986531 1346777743
No 112
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.00 E-value=1.5e-08 Score=86.12 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=83.0
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEEC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 89 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (492)
|||+|+... +.++.++++.|.++|++|+++++..+..... ..+
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~----------------------------~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKYE----------------------------IIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhhh----------------------------HhC
Confidence 788988732 4578999999999999999999954321100 135
Q ss_pred CeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchh-hhHHHHHHHHHhhcCCCC-C
Q 011163 90 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWET-AIVGPLFWDIFVKQGLEG-T 167 (492)
Q Consensus 90 gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~-~~~~~~~~~~~~~~~~~~-~ 167 (492)
|++++.++. + ..... .+.. ...+...++ ..+|||||+|...+ ++++.++++. .+ +
T Consensus 44 ~i~~~~~~~---~----~k~~~-------~~~~-~~~l~k~ik--~~~~DvIh~h~~~~~~~~~~l~~~~------~~~~ 100 (139)
T PF13477_consen 44 GIKVIRLPS---P----RKSPL-------NYIK-YFRLRKIIK--KEKPDVIHCHTPSPYGLFAMLAKKL------LKNK 100 (139)
T ss_pred CeEEEEecC---C----CCccH-------HHHH-HHHHHHHhc--cCCCCEEEEecCChHHHHHHHHHHH------cCCC
Confidence 777777741 1 10111 1111 123344444 47899999999654 5665555432 45 8
Q ss_pred cEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccC
Q 011163 168 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVS 229 (492)
Q Consensus 168 ~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS 229 (492)
|+|+|.|+..+... +. . ... ...+.+.+++.||.+++.|
T Consensus 101 ~~i~~~hg~~~~~~-~~-~----------------~~~-----~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 101 KVIYTVHGSDFYNS-SK-K----------------KKL-----KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CEEEEecCCeeecC-Cc-h----------------HHH-----HHHHHHHHHHhCCEEEEcC
Confidence 99999997543100 00 0 000 1246678889999999865
No 113
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.5e-09 Score=103.61 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=70.8
Q ss_pred HHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeee-------cCCCHHHHHHHH
Q 011163 378 HLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS-------STFGNISLSQAL 450 (492)
Q Consensus 378 ~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~-------~~~~~~~l~~ai 450 (492)
.++.++|.+.|+||.|||+|.+..|.--+|.|-|.++. .|+.-+.++..+....-|+++ +.++++.|++-|
T Consensus 495 eeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNl--SGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 495 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNL--SGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred HHHhccccccccccccCCCCCCchheEEeccccccccc--cchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 46789999999999999999999999999999999998 666544432221122235443 233456777777
Q ss_pred HHHhcCHHHHHHHHHHHHh----ccCCchhhHHHHHHHH
Q 011163 451 EEIKNNPLSWKRKIKDAML----QDFSWDADCNDIHISA 485 (492)
Q Consensus 451 ~~~~~~~~~~~~~~~~a~~----~~fsw~~~a~~~~~~~ 485 (492)
..+-. ..+++++.++-+. .-.+|..+... |.+.
T Consensus 573 ~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~-Y~~a 609 (692)
T KOG3742|consen 573 YEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRY-YRKA 609 (692)
T ss_pred HHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHH-HHHH
Confidence 77643 3445565554433 56789988766 3543
No 114
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.90 E-value=1.2e-06 Score=87.16 Aligned_cols=270 Identities=13% Similarity=0.100 Sum_probs=148.4
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-chhhhHHHHHHHHHhhcCCCCCcEEEEecCC-CCCCCCCchhhhhcCCCccccCCCCc
Q 011163 125 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNL-NSLCLEHPDKLALCGLDPARLHRPDR 202 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~-~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (492)
..+.+++.+ .+||+|-+|. ..+.+.+++.+.. .++|+++ +|+- ...+. +.
T Consensus 83 ~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~~------~~IPv~H-veaG~rs~~~-~e------------------ 134 (365)
T TIGR03568 83 IGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAAL------LNIPIAH-IHGGEVTEGA-ID------------------ 134 (365)
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHH------hCCcEEE-EECCccCCCC-ch------------------
Confidence 444445543 7899999986 4455555555443 7899884 3431 11110 00
Q ss_pred ccCCCCCccchhhHHH-HhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecC-CCCCCCcCCCCCccccccc
Q 011163 203 LQDNTKTHLVNILKGG-VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPC-GFDSSTWDPSNDKFLTENY 280 (492)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~n-Gvd~~~f~p~~~~~~~~~~ 280 (492)
...+.. -+.||...+.++..++.+... | +.+.++.++-| ++|.-.+...
T Consensus 135 ----------E~~r~~i~~la~l~f~~t~~~~~~L~~e--g--------~~~~~i~~tG~~~iD~l~~~~~--------- 185 (365)
T TIGR03568 135 ----------ESIRHAITKLSHLHFVATEEYRQRVIQM--G--------EDPDRVFNVGSPGLDNILSLDL--------- 185 (365)
T ss_pred ----------HHHHHHHHHHHhhccCCCHHHHHHHHHc--C--------CCCCcEEEECCcHHHHHHhhhc---------
Confidence 111222 344566666666666555431 2 13456766655 4553211110
Q ss_pred CccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccc--cccCHHHHHHHHHHHhHcCcEEEEEecC--C-ChhHHHHHH
Q 011163 281 CAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGTN--K-LPSASRALV 355 (492)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~--~~Kg~~~li~a~~~l~~~~~~lvivG~g--~-~~~~~~~l~ 355 (492)
..+..+.+++|++.+. ..+++..-+-. .....+.+.+.++.+.+.+.+.+++... + +....+.++
T Consensus 186 ---------~~~~~~~~~lgl~~~~-~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~ 255 (365)
T TIGR03568 186 ---------LSKEELEEKLGIDLDK-PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIE 255 (365)
T ss_pred ---------cCHHHHHHHhCCCCCC-CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHH
Confidence 0235677788886432 23333343322 3333333444444443322223444222 1 122334444
Q ss_pred HHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceee
Q 011163 356 SFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSR 435 (492)
Q Consensus 356 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G 435 (492)
++... .+++.+.+..+..+...+++.||+++--|- |.. .||.++|+|+|+ . |.-+|.++ .|.++
T Consensus 256 ~~~~~--~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----ggi-~EA~~lg~Pvv~--l--~~R~e~~~-----~g~nv 319 (365)
T TIGR03568 256 EYVNE--HPNFRLFKSLGQERYLSLLKNADAVIGNSS----SGI-IEAPSFGVPTIN--I--GTRQKGRL-----RADSV 319 (365)
T ss_pred HHhcC--CCCEEEECCCChHHHHHHHHhCCEEEEcCh----hHH-HhhhhcCCCEEe--e--cCCchhhh-----hcCeE
Confidence 44221 257999988888888899999999996653 333 899999999996 5 66667665 35566
Q ss_pred eeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhHHHH
Q 011163 436 FISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDI 481 (492)
Q Consensus 436 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~ 481 (492)
+++ +.|++++.+++..+ .+++.++++.. ....|...+.++++
T Consensus 320 l~v-g~~~~~I~~a~~~~-~~~~~~~~~~~--~~~pygdg~as~rI 361 (365)
T TIGR03568 320 IDV-DPDKEEIVKAIEKL-LDPAFKKSLKN--VKNPYGDGNSSERI 361 (365)
T ss_pred EEe-CCCHHHHHHHHHHH-hChHHHHHHhh--CCCCCCCChHHHHH
Confidence 667 56889999999995 45544343321 12457666666664
No 115
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.80 E-value=2.2e-07 Score=97.92 Aligned_cols=220 Identities=19% Similarity=0.127 Sum_probs=145.8
Q ss_pred cchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcC----CCCCccccccc------
Q 011163 211 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWD----PSNDKFLTENY------ 280 (492)
Q Consensus 211 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~----p~~~~~~~~~~------ 280 (492)
.+++...++..|..|..||.-+.+-+.+..+. ......++++.-|.|||....|- |.-...+....
T Consensus 420 ~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~----df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~~ 495 (815)
T PRK14986 420 RVRMAWLAVVVSHKVNGVSELHSNLMVQSLFA----DFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRT 495 (815)
T ss_pred EEeeHHHHhhccchhhHHHHHHHHHHHHHHHH----HHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhhh
Confidence 46777788888999999998776543332211 01112467888899999988775 32111111000
Q ss_pred Ccc------------C-----ccChHHHHH----HHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHHHHHH---hHc
Q 011163 281 CAE------------D-----MKGKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGA---KMR 335 (492)
Q Consensus 281 ~~~------------~-----~~~~~~~~~----~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a~~~l---~~~ 335 (492)
+.+ + .+-+..+|. .++++.|+.-+++.+..+++-|+.++|...+ ++..+.++ +..
T Consensus 496 d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~ 575 (815)
T PRK14986 496 DLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKAD 575 (815)
T ss_pred ChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhC
Confidence 000 0 011112222 3455778888888889999999999999888 76765544 322
Q ss_pred ------CcEEEEEecCCChh------HHHHHHHHHHHhC-----CC--eEEEEeccCHHHHHHHHhcCCEEEECCC--CC
Q 011163 336 ------GIQFVFTGTNKLPS------ASRALVSFQEELK-----DG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HD 394 (492)
Q Consensus 336 ------~~~lvivG~g~~~~------~~~~l~~~~~~~~-----~~--~v~~~~~~~~~~~~~~~~~adi~v~pS~--~E 394 (492)
+.++++.|.. .|. ..+.+..+++..+ .+ +|.|+..|+-.....++.+||+...-|. .|
T Consensus 576 p~~~~~P~~~IFaGKA-aP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~E 654 (815)
T PRK14986 576 PDAKWVPRVNIFAGKA-ASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTE 654 (815)
T ss_pred CCcCCCCeEEEEeecC-CCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCcc
Confidence 4678887732 221 1223333343111 13 7999999998888899999999999987 79
Q ss_pred CCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 395 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 395 ~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
++|.+-|-+|..|.+.+++-. |+-.|+.+.. -++|||.|..
T Consensus 655 ASGTsnMK~alNGaLtlgtlD--G~nvEi~e~v---G~eN~~~fG~ 695 (815)
T PRK14986 655 ASGTSNMKFALNGALTIGTLD--GANVEMLEHV---GEENIFIFGN 695 (815)
T ss_pred ccCcchhhHHhcCceeeeccC--CchhHHHHhc---CCCcEEEeCC
Confidence 999999999999999999999 9999986521 1457788743
No 116
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=98.73 E-value=2.8e-07 Score=96.71 Aligned_cols=219 Identities=19% Similarity=0.148 Sum_probs=143.5
Q ss_pred chhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcC----CCCCcccccc--------
Q 011163 212 VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWD----PSNDKFLTEN-------- 279 (492)
Q Consensus 212 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~----p~~~~~~~~~-------- 279 (492)
+++...++..|..|-.||.-+.+-+.+..+. ......+.++.-+.|||....|- |.-...+...
T Consensus 407 v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~----df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d 482 (798)
T PRK14985 407 VRMANLCVVSGFAVNGVAALHSDLVVKDLFP----EYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKKEWAND 482 (798)
T ss_pred eehHHHHHHhcchhHhhHHHHhchhHHhhhh----hhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCcchhhC
Confidence 5667778888888889988766533332221 01112467888999999988884 3211111110
Q ss_pred ---------cCcc-C-----ccChHHHHH----HHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHHHHHHhH---c-
Q 011163 280 ---------YCAE-D-----MKGKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGAKM---R- 335 (492)
Q Consensus 280 ---------~~~~-~-----~~~~~~~~~----~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a~~~l~~---~- 335 (492)
+..+ . .+-+..+|. .++++.|+..+++.+..+++-|+.++|...+ ++..+.++.+ .
T Consensus 483 ~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p 562 (798)
T PRK14985 483 LDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENP 562 (798)
T ss_pred hHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCC
Confidence 1100 0 011111222 3456778888888888899999999999888 7666554432 1
Q ss_pred -----CcEEEEEecCCChh--HHH----HHHHHHHHhC-----CC--eEEEEeccCHHHHHHHHhcCCEEEECCC--CCC
Q 011163 336 -----GIQFVFTGTNKLPS--ASR----ALVSFQEELK-----DG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HDP 395 (492)
Q Consensus 336 -----~~~lvivG~g~~~~--~~~----~l~~~~~~~~-----~~--~v~~~~~~~~~~~~~~~~~adi~v~pS~--~E~ 395 (492)
+.++++.|.. .|. ... .+..+++..+ .+ +|.|+..|+-.....++.+||+...-|. .|+
T Consensus 563 ~~~~~P~~~IFaGKA-aP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EA 641 (798)
T PRK14985 563 QADRVPRVFLFGAKA-APGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEA 641 (798)
T ss_pred CcCCCCeEEEEeecC-CCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccc
Confidence 3678887732 221 122 3333333321 13 7999999998888899999999999987 799
Q ss_pred CchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 396 LLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 396 ~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
+|.+-|-+|..|++.+++-. |+-.|+.+.. -++|||.|..
T Consensus 642 SGTsnMK~amNGaLtlgtlD--GanvEi~e~v---G~eN~f~fG~ 681 (798)
T PRK14985 642 SGTGNMKLALNGALTVGTLD--GANVEIAEQV---GEENIFIFGH 681 (798)
T ss_pred cCcchhHHHhcCceeeeccc--chHHHHHHHh---CcCcEEEeCC
Confidence 99999999999999999998 9988886421 1346777743
No 117
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.71 E-value=1.4e-07 Score=99.20 Aligned_cols=220 Identities=20% Similarity=0.159 Sum_probs=145.1
Q ss_pred cchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcC----CCCCcccccccC-----
Q 011163 211 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWD----PSNDKFLTENYC----- 281 (492)
Q Consensus 211 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~----p~~~~~~~~~~~----- 281 (492)
.+++...++..|..|..||.-+.+-+....+. ......++++.-+.|||..-+|- |.-...+.....
T Consensus 404 ~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~----df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~ 479 (794)
T TIGR02093 404 RVRMANLAIVGSHSVNGVAALHTELLKEDLLK----DFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGDDWLT 479 (794)
T ss_pred EEehHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCchhhh
Confidence 46777888889999999998776644432110 01113467888999999987775 211111111000
Q ss_pred -----------ccC------c-cChHHHHH----HHHHHhCCCCCCCceEEEEEeccccccCHHH-HHHHHHHH---hHc
Q 011163 282 -----------AED------M-KGKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGA---KMR 335 (492)
Q Consensus 282 -----------~~~------~-~~~~~~~~----~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~-li~a~~~l---~~~ 335 (492)
++| + +-|..+|. .++++.|+..++..+..+++-|+.++|...+ ++..+.++ ++.
T Consensus 480 d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~ 559 (794)
T TIGR02093 480 DLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED 559 (794)
T ss_pred cHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhC
Confidence 011 0 11122222 3556788888888888899999999999888 66665444 332
Q ss_pred ------CcEEEEEecCCChh--HH----HHHHHHHHHhC-----CC--eEEEEeccCHHHHHHHHhcCCEEEECCC--CC
Q 011163 336 ------GIQFVFTGTNKLPS--AS----RALVSFQEELK-----DG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HD 394 (492)
Q Consensus 336 ------~~~lvivG~g~~~~--~~----~~l~~~~~~~~-----~~--~v~~~~~~~~~~~~~~~~~adi~v~pS~--~E 394 (492)
+.++++.|.. .|. .. +.+..+++..+ .+ +|.|+..|+-.....++.+||+...-|. .|
T Consensus 560 p~~~~~P~~~IFaGKA-aP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~E 638 (794)
T TIGR02093 560 PPKDIVPRTVIFGGKA-APGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKE 638 (794)
T ss_pred CCcCCCCeEEEEEecC-CCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCcc
Confidence 4577777732 221 12 23333333211 13 7999999998888899999999999987 79
Q ss_pred CCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 395 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 395 ~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
++|.+-|-+|..|.+.+++-. |+-.|+.++. -++|+|+|..
T Consensus 639 ASGTsnMK~alNGaltlgtlD--GanvEi~e~v---G~eN~fiFG~ 679 (794)
T TIGR02093 639 ASGTGNMKFMLNGALTIGTLD--GANVEIREEV---GAENIFIFGL 679 (794)
T ss_pred ccCcchhHHHhcCcceeeccc--chhHHHHHHh---CcccEEEcCC
Confidence 999999999999999999998 9999986531 1346677643
No 118
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.56 E-value=3.2e-05 Score=77.68 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=88.8
Q ss_pred EEEEEecc--ccccCHHHHHHHHHHHhH-cCcEEEEEecCCChhHHHHHHHHHHHhCC---------------CeEEEEe
Q 011163 309 VVGCIFSD--VSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD---------------GIVIFVD 370 (492)
Q Consensus 309 ~i~~~grl--~~~Kg~~~li~a~~~l~~-~~~~lvivG~g~~~~~~~~l~~~~~~~~~---------------~~v~~~~ 370 (492)
+++.-|.- .-.+.+..++++++++.+ .++++++.-.+. .. .+.+++...+.+. +++.+..
T Consensus 208 lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~-~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~ 285 (396)
T TIGR03492 208 IALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPS-LS-LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLL 285 (396)
T ss_pred EEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCC-CC-HHHHHHHHHhcCceecCCccccchhhccCceEEEe
Confidence 44444532 344567799999999864 367776543121 12 2334444443211 1244432
Q ss_pred ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccc---ccccccccceeeeeecCCCHHHHH
Q 011163 371 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHF---AEFDHESTRFSRFISSTFGNISLS 447 (492)
Q Consensus 371 ~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~---v~~~~~~~g~~G~~~~~~~~~~l~ 447 (492)
.+ ++...+|+.||++|..|- .+..|++++|+|+|.... .+-... .+..+...|. .......+++.++
T Consensus 286 ~~--~~~~~~l~~ADlvI~rSG-----t~T~E~a~lg~P~Ilip~--~~~q~na~~~~~~~~l~g~-~~~l~~~~~~~l~ 355 (396)
T TIGR03492 286 GR--GAFAEILHWADLGIAMAG-----TATEQAVGLGKPVIQLPG--KGPQFTYGFAEAQSRLLGG-SVFLASKNPEQAA 355 (396)
T ss_pred ch--HhHHHHHHhCCEEEECcC-----HHHHHHHHhCCCEEEEeC--CCCHHHHHHHHhhHhhcCC-EEecCCCCHHHHH
Confidence 22 335689999999998854 566999999999999874 222111 1110000122 3445567789999
Q ss_pred HHHHHHhcCHHHHHHHHHHH
Q 011163 448 QALEEIKNNPLSWKRKIKDA 467 (492)
Q Consensus 448 ~ai~~~~~~~~~~~~~~~~a 467 (492)
+++..+++|++.+++|.+++
T Consensus 356 ~~l~~ll~d~~~~~~~~~~~ 375 (396)
T TIGR03492 356 QVVRQLLADPELLERCRRNG 375 (396)
T ss_pred HHHHHHHcCHHHHHHHHHHH
Confidence 99999999999888887543
No 119
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.56 E-value=1.9e-05 Score=79.85 Aligned_cols=133 Identities=17% Similarity=0.094 Sum_probs=78.8
Q ss_pred ceEEEEEecccc---ccCHHHHHHHHHHHhHcCcEEEE-EecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHh
Q 011163 307 TIVVGCIFSDVS---DVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 307 ~~~i~~~grl~~---~Kg~~~li~a~~~l~~~~~~lvi-vG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 382 (492)
.++++..|.... .+....+++|+..+ +.++++ +|.... .. ... .++|.+.+.++.. .++.
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~---~~------~~~-~~~v~~~~~~p~~---~ll~ 303 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGL---GA------EDL-PDNVRVVDFVPHD---WLLP 303 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCccc---cc------cCC-CCceEEeCCCCHH---HHhh
Confidence 456777787643 33344555555443 556554 443221 11 122 3788877666543 5689
Q ss_pred cCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeecCC--CHHHHHHHHHHHhcCHHH
Q 011163 383 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTF--GNISLSQALEEIKNNPLS 459 (492)
Q Consensus 383 ~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~~--~~~~l~~ai~~~~~~~~~ 459 (492)
.||++|.- +-..++.||+++|+|.|+... ++ |...... ....+.|...+.. +++++.++++++++++ .
T Consensus 304 ~~d~~I~h----gG~~t~~eal~~GvP~v~~P~--~~--dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~ 374 (401)
T cd03784 304 RCAAVVHH----GGAGTTAAALRAGVPQLVVPF--FG--DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-S 374 (401)
T ss_pred hhheeeec----CCchhHHHHHHcCCCEEeeCC--CC--CcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-H
Confidence 99999944 334788999999999999876 32 2111000 0012245665554 6789999999998854 3
Q ss_pred HHHHH
Q 011163 460 WKRKI 464 (492)
Q Consensus 460 ~~~~~ 464 (492)
+++..
T Consensus 375 ~~~~~ 379 (401)
T cd03784 375 RRRAA 379 (401)
T ss_pred HHHHH
Confidence 34333
No 120
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.52 E-value=7e-06 Score=85.59 Aligned_cols=221 Identities=16% Similarity=0.146 Sum_probs=128.2
Q ss_pred ccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCc--------cccccc-
Q 011163 210 HLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK--------FLTENY- 280 (492)
Q Consensus 210 ~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~--------~~~~~~- 280 (492)
..+++...++..|..|..||.-+.+-+.+..+. ......+.++.-|.|||...+|.....+ ++....
T Consensus 320 ~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~----~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~ 395 (713)
T PF00343_consen 320 KRFRMANLALRGSHSVNGVSKLHGEVLKQMVFK----DFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWR 395 (713)
T ss_dssp CEEEHHHHHHHCESEEEESSHHHHHHHHHTTTH----HHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGG
T ss_pred hhcchhHHHHHhcccccchHHHHHHHHHHHHhh----hhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccc
Confidence 356788889999999999999876644433221 1223356789999999999888532111 111110
Q ss_pred -CccCc------cC---------------hHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHH-HH---HHHHHhH
Q 011163 281 -CAEDM------KG---------------KTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL-KA---VVRGAKM 334 (492)
Q Consensus 281 -~~~~~------~~---------------~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~l-i~---a~~~l~~ 334 (492)
+.+.+ .. |......++++.|+.-++.....+++-|+.++|...+. +. -+.++++
T Consensus 396 ~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~ 475 (713)
T PF00343_consen 396 TDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKN 475 (713)
T ss_dssp CSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHh
Confidence 11110 01 11112234556787767778888999999999998873 33 3445554
Q ss_pred c------CcEEEEEecCCChhH--HH----HHHHHHHHh---CC--C--eEEEEeccCHHHHHHHHhcCCEEEECCC--C
Q 011163 335 R------GIQFVFTGTNKLPSA--SR----ALVSFQEEL---KD--G--IVIFVDSYDDALLHLIFSGSDIILCHSF--H 393 (492)
Q Consensus 335 ~------~~~lvivG~g~~~~~--~~----~l~~~~~~~---~~--~--~v~~~~~~~~~~~~~~~~~adi~v~pS~--~ 393 (492)
. +.++++.|.. .|.+ -+ .+.++++.. +. + +|.|+..|+-.....++.+||+....|. .
T Consensus 476 ~p~~~~~Pv~~IFaGKA-hP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~ 554 (713)
T PF00343_consen 476 NPNKKIRPVQFIFAGKA-HPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPK 554 (713)
T ss_dssp STTSCCS-EEEEEE-----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTS
T ss_pred cccCCCCCeEEEEeccC-CCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCc
Confidence 2 4678888832 2222 12 222233221 11 3 7999999999998999999999999997 7
Q ss_pred CCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC
Q 011163 394 DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 440 (492)
Q Consensus 394 E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~ 440 (492)
|++|.+-|-||..|.+.+++-. |.-.|+.+... ..|.|+|..
T Consensus 555 EASGTSgMK~~~NGaL~lstlD--G~niEi~e~vG---~eN~fiFG~ 596 (713)
T PF00343_consen 555 EASGTSGMKAAMNGALNLSTLD--GWNIEIAEAVG---EENIFIFGL 596 (713)
T ss_dssp SSS-SHHHHHHHTT-EEEEESS--TCHHHHHHHH----GGGSEEES-
T ss_pred cccCCCcchhhcCCCeEEeccc--chhHHHHHhcC---CCcEEEcCC
Confidence 9999999999999999999988 99999875311 235677743
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.51 E-value=4.8e-05 Score=73.81 Aligned_cols=297 Identities=13% Similarity=0.087 Sum_probs=153.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCCCcccccccceeeeeeeeecCCeeeEEEEEEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 88 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (492)
|||++-... | ---.+...+.++|.++||+|.|.+..+....+ +- ..
T Consensus 1 MkIwiDi~~--p-----~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~-----LL----------------------~~ 46 (335)
T PF04007_consen 1 MKIWIDITH--P-----AHVHFFKNIIRELEKRGHEVLITARDKDETEE-----LL----------------------DL 46 (335)
T ss_pred CeEEEECCC--c-----hHHHHHHHHHHHHHhCCCEEEEEEeccchHHH-----HH----------------------HH
Confidence 888876542 2 24577889999999999999999987653211 11 01
Q ss_pred CCeEEEEEccCCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCc
Q 011163 89 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 168 (492)
Q Consensus 89 ~gv~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~ 168 (492)
-|++...+.... ...+ +...........+.+.++ +++|||+-++....+...++ ..|+|
T Consensus 47 yg~~y~~iG~~g-------~~~~---~Kl~~~~~R~~~l~~~~~--~~~pDv~is~~s~~a~~va~---------~lgiP 105 (335)
T PF04007_consen 47 YGIDYIVIGKHG-------DSLY---GKLLESIERQYKLLKLIK--KFKPDVAISFGSPEAARVAF---------GLGIP 105 (335)
T ss_pred cCCCeEEEcCCC-------CCHH---HHHHHHHHHHHHHHHHHH--hhCCCEEEecCcHHHHHHHH---------HhCCC
Confidence 255555553210 0111 111111111233333343 47999999875433221122 27899
Q ss_pred EEEEecCCCCCCCCCchhhhhcCCCccccCCCCcccCCCCCccchhhHHHHhhcCceeccCccchhhhhhcccCCCccHH
Q 011163 169 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 248 (492)
Q Consensus 169 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~ 248 (492)
.|....+-.. .. ..+..+-.||.+++.+- +.+.... .+|
T Consensus 106 ~I~f~D~e~a-~~--------------------------------~~~Lt~Pla~~i~~P~~-~~~~~~~-~~G------ 144 (335)
T PF04007_consen 106 SIVFNDTEHA-IA--------------------------------QNRLTLPLADVIITPEA-IPKEFLK-RFG------ 144 (335)
T ss_pred eEEEecCchh-hc--------------------------------cceeehhcCCeeECCcc-cCHHHHH-hcC------
Confidence 9987764210 00 00111234666665432 2221111 122
Q ss_pred HhhhcCCeeee-cCCCCCCC----cCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccC--
Q 011163 249 LAIHQDKLLVA-PCGFDSST----WDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVF-- 321 (492)
Q Consensus 249 ~~~~~~~~~vI-~nGvd~~~----f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg-- 321 (492)
.+-++. +||++.-. |.|. .++.+++|+.++ +.++. |..+.+-
T Consensus 145 -----~~~~i~~y~G~~E~ayl~~F~Pd---------------------~~vl~~lg~~~~---~yIvv--R~~~~~A~y 193 (335)
T PF04007_consen 145 -----AKNQIRTYNGYKELAYLHPFKPD---------------------PEVLKELGLDDE---PYIVV--RPEAWKASY 193 (335)
T ss_pred -----CcCCEEEECCeeeEEeecCCCCC---------------------hhHHHHcCCCCC---CEEEE--EeccccCee
Confidence 112455 88988533 3332 346778896532 33332 3333221
Q ss_pred ----HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCc
Q 011163 322 ----LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 397 (492)
Q Consensus 322 ----~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~g 397 (492)
-..+-+.++++.+..-.+|++-... +. +++.+++ + +.+.. ..-....++.-||++|--+ |
T Consensus 194 ~~~~~~i~~~ii~~L~~~~~~vV~ipr~~--~~----~~~~~~~--~-~~i~~--~~vd~~~Ll~~a~l~Ig~g-----g 257 (335)
T PF04007_consen 194 DNGKKSILPEIIEELEKYGRNVVIIPRYE--DQ----RELFEKY--G-VIIPP--EPVDGLDLLYYADLVIGGG-----G 257 (335)
T ss_pred ecCccchHHHHHHHHHhhCceEEEecCCc--ch----hhHHhcc--C-ccccC--CCCCHHHHHHhcCEEEeCC-----c
Confidence 1234566666665543466665322 11 1222333 2 32221 1111235778899999643 4
Q ss_pred hHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHh
Q 011163 398 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 454 (492)
Q Consensus 398 lv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~ 454 (492)
.-..||...|+|.|.+.. |-... ++.- --+.|.++...|++++.+.+...+
T Consensus 258 TMa~EAA~LGtPaIs~~~--g~~~~-vd~~---L~~~Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 258 TMAREAALLGTPAISCFP--GKLLA-VDKY---LIEKGLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHhCCCEEEecC--Ccchh-HHHH---HHHCCCeEecCCHHHHHHHHHHhh
Confidence 667999999999998765 43211 2110 012478888889988887665543
No 122
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00012 Score=73.38 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=118.7
Q ss_pred HHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CeEEEEec
Q 011163 296 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDS 371 (492)
Q Consensus 296 ~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~--~~v~~~~~ 371 (492)
|..+|+|.+ ..+|++.++.. |-...+++-..++.+ .+..|++.|.|++++..+.++.++++.+. +|.+|.+.
T Consensus 421 R~~lglp~~--avVf~c~~n~~--K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLPED--AVVFCCFNNYF--KITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCCCC--eEEEEecCCcc--cCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 578899875 35555555544 445577777777665 37899999866677888999999998764 89999988
Q ss_pred cCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc------ccccccccccceeeeeecCCCHHH
Q 011163 372 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR------HFAEFDHESTRFSRFISSTFGNIS 445 (492)
Q Consensus 372 ~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~------e~v~~~~~~~g~~G~~~~~~~~~~ 445 (492)
.+.++-.+.|.-||+++=+.-|- -..+.+||+.+|+||+. .. |--- .++.. .|-.-.+. .+.++
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY~-g~TTa~daLwm~vPVlT-~~--G~~FasR~~~si~~~----agi~e~vA--~s~~d 566 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPYG-GHTTASDALWMGVPVLT-RV--GEQFASRNGASIATN----AGIPELVA--DSRAD 566 (620)
T ss_pred CCCHHHHHhhchhheeeecccCC-CccchHHHHHhcCceee-ec--cHHHHHhhhHHHHHh----cCCchhhc--CCHHH
Confidence 87777778899999999776553 36788999999997774 22 2100 01110 11111222 24445
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH---h--ccCCchhhHHHHHHHHHHHH
Q 011163 446 LSQALEEIKNNPLSWKRKIKDAM---L--QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 446 l~~ai~~~~~~~~~~~~~~~~a~---~--~~fsw~~~a~~~~~~~Y~~l 489 (492)
..+.--.+-+|..++++.+..-. . --|+-+..++++ +.+|..+
T Consensus 567 YV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~l-e~~y~~M 614 (620)
T COG3914 567 YVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKL-ETLYWGM 614 (620)
T ss_pred HHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHH-HHHHHHH
Confidence 55544445466655555443222 1 258889999996 9999875
No 123
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.42 E-value=0.00019 Score=68.52 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=68.0
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHhHcCcEE-EEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCE
Q 011163 308 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQF-VFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 386 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~l-vivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi 386 (492)
.++++.|...+.+....+++++.++. .+.++ +++|.+. ...+++++..+.. .++.+. ++. +.+.++|+.||+
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~--~~~~~l~~~~~~~--~~i~~~-~~~-~~m~~lm~~aDl 244 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSN--PNLDELKKFAKEY--PNIILF-IDV-ENMAELMNEADL 244 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCC--cCHHHHHHHHHhC--CCEEEE-eCH-HHHHHHHHHCCE
Confidence 46778888888776677888887654 34444 3556432 2345677776664 477754 333 346789999999
Q ss_pred EEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 387 ILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 387 ~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
+|.+ .|.++.|++++|+|+|+...
T Consensus 245 ~Is~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 245 AIGA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EEEC-----CchHHHHHHHcCCCEEEEEe
Confidence 9984 56899999999999998654
No 124
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.38 E-value=9.8e-06 Score=81.23 Aligned_cols=183 Identities=12% Similarity=0.002 Sum_probs=110.3
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CeEEEEe
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVD 370 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~--~~v~~~~ 370 (492)
.|+.+|++.+ ..+|++..++.+. -+..++++.++.+ .+.+|++.. .+. .-++.+++..++.+. +|+.|.+
T Consensus 275 ~R~~~gLp~d--~vvF~~fn~~~KI--~p~~l~~W~~IL~~vP~S~L~L~~-~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~ 348 (468)
T PF13844_consen 275 TRAQYGLPED--AVVFGSFNNLFKI--SPETLDLWARILKAVPNSRLWLLR-FPA-SGEARLRRRFAAHGVDPDRIIFSP 348 (468)
T ss_dssp ETGGGT--SS--SEEEEE-S-GGG----HHHHHHHHHHHHHSTTEEEEEEE-TST-THHHHHHHHHHHTTS-GGGEEEEE
T ss_pred CHHHcCCCCC--ceEEEecCccccC--CHHHHHHHHHHHHhCCCcEEEEee-CCH-HHHHHHHHHHHHcCCChhhEEEcC
Confidence 3678999865 4777777776655 5688898888876 378888876 332 335677777777663 8999887
Q ss_pred ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc-ccceeeeeecCCCHHHHHHH
Q 011163 371 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-STRFSRFISSTFGNISLSQA 449 (492)
Q Consensus 371 ~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~~g~~G~~~~~~~~~~l~~a 449 (492)
..+.++--..++.+|+++=|..+ +-|.+.+||+.+|+|+|.-.- -.+..=+..+.. .-|..-++ ..|.+++.+.
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G--~~~~sR~~aSiL~~lGl~ElI--A~s~~eYv~~ 423 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPG--ETMASRVGASILRALGLPELI--ADSEEEYVEI 423 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB-----SSGGGSHHHHHHHHHT-GGGB---SSHHHHHHH
T ss_pred CCCHHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccC--CCchhHHHHHHHHHcCCchhc--CCCHHHHHHH
Confidence 66665555678999999988655 347899999999998887542 111111110000 01222233 3467788888
Q ss_pred HHHHhcCHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHH
Q 011163 450 LEEIKNNPLSWKRKIKDAML-----QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 450 i~~~~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~~~~~Y~~l 489 (492)
-.++.+|++.+++++++-+. --|+-...++++ ++.|+++
T Consensus 424 Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~l-E~a~~~m 467 (468)
T PF13844_consen 424 AVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNL-EAAYRQM 467 (468)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHH-HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH-HHHHHHh
Confidence 88888899988877765543 358889999995 9999864
No 125
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.36 E-value=0.00012 Score=71.52 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=77.3
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCE
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 386 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi 386 (492)
..++++.|..... .++++++.+. +.+++++|... . +.. .++|++. .++.+...++|+.||+
T Consensus 193 ~~iLv~~gg~~~~----~~~~~l~~~~--~~~~~v~g~~~----~-------~~~-~~ni~~~-~~~~~~~~~~m~~ad~ 253 (318)
T PF13528_consen 193 PKILVYFGGGGPG----DLIEALKALP--DYQFIVFGPNA----A-------DPR-PGNIHVR-PFSTPDFAELMAAADL 253 (318)
T ss_pred CEEEEEeCCCcHH----HHHHHHHhCC--CCeEEEEcCCc----c-------ccc-CCCEEEe-ecChHHHHHHHHhCCE
Confidence 3577888887655 5677777654 57888888431 0 001 2688855 6665566789999999
Q ss_pred EEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeec--CCCHHHHHHHHHHH
Q 011163 387 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISS--TFGNISLSQALEEI 453 (492)
Q Consensus 387 ~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~--~~~~~~l~~ai~~~ 453 (492)
+|.-+-+ .++.||+++|+|+++-.. .+..|...... ...-+.|...+ .-+++.|+++|+++
T Consensus 254 vIs~~G~----~t~~Ea~~~g~P~l~ip~--~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 254 VISKGGY----TTISEALALGKPALVIPR--PGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEECCCH----HHHHHHHHcCCCEEEEeC--CCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 9976532 348999999999999887 55555421000 00111244443 34567788877654
No 126
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=98.35 E-value=4.2e-06 Score=82.70 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=73.8
Q ss_pred eEEEEeeccc-------cccccCcHHHHHhHHHHHHHHC--------CC----eEEEEeecCCCCCcc-cccccceeeee
Q 011163 10 HIIHICTEMD-------PLVSIGSLASYVTGLSGALQRK--------GH----LVEVILPKYACMNLD-GVQGLREIKAE 69 (492)
Q Consensus 10 kIl~v~~~~~-------p~~~~GG~~~~~~~l~~~L~~~--------Gh----~V~vi~~~~~~~~~~-~~~~~~~~~~~ 69 (492)
+|++++++.. -.+.+||.-+|+.+++++|.+. |. +|.++|...++.... ....+..+
T Consensus 274 ~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~--- 350 (550)
T PF00862_consen 274 NVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKV--- 350 (550)
T ss_dssp EEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEE---
T ss_pred EEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcccccccc---
Confidence 7888887631 1246799999999999999763 43 488888765542211 00111111
Q ss_pred eeeecCCeeeEEEEEEEEECCeEEEEEccCCC----CCCccCCCCCCCCChhHHHHHHHHHHH-HHHHHcCCCCCEEEEc
Q 011163 70 CYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDFERFTYFSRASL-DYIVKSRKQPDVLHIH 144 (492)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pDiVh~h 144 (492)
.| -++..+.+++.-.. +.|.++..+|.|.. .|+..+. ++....+.+||+||.|
T Consensus 351 -----~g-----------t~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe------~fa~d~~~~i~~e~~~~PdlI~Gn 408 (550)
T PF00862_consen 351 -----SG-----------TENARILRVPFGPEKGILRKWISRFDLWPYLE------EFADDAEREILAELQGKPDLIIGN 408 (550)
T ss_dssp -----TT-----------ESSEEEEEE-ESESTEEE-S---GGG-GGGHH------HHHHHHHHHHHHHHTS--SEEEEE
T ss_pred -----CC-----------CCCcEEEEecCCCCcchhhhccchhhchhhHH------HHHHHHHHHHHHHhCCCCcEEEec
Confidence 11 13555666652111 12334444454322 2223333 3334457889999999
Q ss_pred CchhhhHHHHHHHHHhhcCCCCCcEEEEecCCC
Q 011163 145 NWETAIVGPLFWDIFVKQGLEGTRILLSCHNLN 177 (492)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~ 177 (492)
+..+++++++++.+ .++|-.+|-|.+.
T Consensus 409 YsDgnlvA~LLs~~------lgv~~~~iaHsLe 435 (550)
T PF00862_consen 409 YSDGNLVASLLSRK------LGVTQCFIAHSLE 435 (550)
T ss_dssp HHHHHHHHHHHHHH------HT-EEEEE-SS-H
T ss_pred cCcchHHHHHHHhh------cCCceehhhhccc
Confidence 98899998888775 6999999999763
No 127
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=0.00012 Score=70.57 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEec-cc-cccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeE
Q 011163 291 CKVTLQQQLGLSKDASTIVVGCIFS-DV-SDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIV 366 (492)
Q Consensus 291 ~~~~~~~~lg~~~~~~~~~i~~~gr-l~-~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v 366 (492)
++..+|+++|++.+.+ .+.+..|. -. -.+-...+++|++++.. .+.++++--.. ..++....+..+.. ....
T Consensus 174 ~r~~ar~~l~~~~~~~-~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~--~~~~~~~~~~~~~~-~~~~ 249 (381)
T COG0763 174 DREAAREKLGIDADEK-TLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVN--AKYRRIIEEALKWE-VAGL 249 (381)
T ss_pred cHHHHHHHhCCCCCCC-eEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc--HHHHHHHHHHhhcc-ccCc
Confidence 5666999999997644 44555663 22 33345566777777774 37888886632 22232222222221 1011
Q ss_pred EEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccc----------------cccccccc
Q 011163 367 IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH----------------FAEFDHES 430 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e----------------~v~~~~~~ 430 (492)
.. ...+....+.+..||+.+..| |.+.+|++.+|+|.|++-- +..+.- ++-..+..
T Consensus 250 ~~--~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk-~~~it~~iak~lvk~~yisLpNIi~~~~iv 321 (381)
T COG0763 250 SL--ILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYK-VKPITYFIAKRLVKLPYVSLPNILAGREIV 321 (381)
T ss_pred eE--EecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEe-ccHHHHHHHHHhccCCcccchHHhcCCccc
Confidence 11 123334457789999988876 6899999999999987642 122222 21100000
Q ss_pred cceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011163 431 TRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIK 465 (492)
Q Consensus 431 ~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~ 465 (492)
. =++-+...++.|++++..++.|+..++++.+
T Consensus 322 P---Eliq~~~~pe~la~~l~~ll~~~~~~~~~~~ 353 (381)
T COG0763 322 P---ELIQEDCTPENLARALEELLLNGDRREALKE 353 (381)
T ss_pred h---HHHhhhcCHHHHHHHHHHHhcChHhHHHHHH
Confidence 0 0122234578999999999998855555443
No 128
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.27 E-value=0.00063 Score=67.07 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCCCCCceEEEEEe-ccccc-cCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCCCeEE
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIF-SDVSD-VFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKDGIVI 367 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~g-rl~~~-Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~ 367 (492)
+...++.+ ++.+. ..+.+..| |-.+- +.+..++++++++.+. ++++++.... ....+.+++.....+ ..+.
T Consensus 172 ~~~~~~~~-l~~~~-~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~--~~~~~~i~~~~~~~~-~~~~ 246 (373)
T PF02684_consen 172 RAEAREKL-LDPDK-PIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP--EVHEELIEEILAEYP-PDVS 246 (373)
T ss_pred HHHHHHhc-CCCCC-cEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC--HHHHHHHHHHHHhhC-CCCe
Confidence 34455566 66543 33445566 44433 3447788999988864 7888887632 233444555555443 2222
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcc----------------ccccccccccc
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEF----------------RHFAEFDHEST 431 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~----------------~e~v~~~~~~~ 431 (492)
... .. .+..+.|+.||+.+..| |.+.+|++..|+|.|+.-- +..+ +.++-..+. -
T Consensus 247 ~~~-~~-~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk-~~~lt~~iak~lvk~~~isL~Niia~~~v-~ 317 (373)
T PF02684_consen 247 IVI-IE-GESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYK-VSPLTYFIAKRLVKVKYISLPNIIAGREV-V 317 (373)
T ss_pred EEE-cC-CchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEc-CcHHHHHHHHHhhcCCEeechhhhcCCCc-c
Confidence 221 12 22346789999998876 6899999999999987543 0222 222110000 0
Q ss_pred ceeeeeecCCCHHHHHHHHHHHhcCHHHHHH
Q 011163 432 RFSRFISSTFGNISLSQALEEIKNNPLSWKR 462 (492)
Q Consensus 432 g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~ 462 (492)
. =++-+..+++.+++++..+++|++.++.
T Consensus 318 P--EliQ~~~~~~~i~~~~~~ll~~~~~~~~ 346 (373)
T PF02684_consen 318 P--ELIQEDATPENIAAELLELLENPEKRKK 346 (373)
T ss_pred h--hhhcccCCHHHHHHHHHHHhcCHHHHHH
Confidence 0 1444566889999999999999876433
No 129
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.25 E-value=0.00022 Score=70.24 Aligned_cols=276 Identities=11% Similarity=0.096 Sum_probs=139.3
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-chhhhHHHHHHHHHhhcCCCCCcEEEEecCCCCCCCCCchhhhhcCCCccccCCCCcc
Q 011163 125 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 203 (492)
Q Consensus 125 ~~~~~~~~~~~~~pDiVh~h~-~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (492)
..+...+.+ .+||+|-++. -...+++++.+.. .++| |..+|+ |.-..+. ..|.
T Consensus 57 ~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~------~~ip-v~Hiea----GlRs~d~--~~g~----------- 110 (346)
T PF02350_consen 57 IELADVLER--EKPDAVLVLGDRNEALAAALAAFY------LNIP-VAHIEA----GLRSGDR--TEGM----------- 110 (346)
T ss_dssp HHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHH------TT-E-EEEES---------S-T--TSST-----------
T ss_pred HHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHH------hCCC-EEEecC----CCCcccc--CCCC-----------
Confidence 333334443 6899999985 4455555555443 7899 555553 1000000 0011
Q ss_pred cCCCCCccchhhHHHH-hhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCC-CCCCCcCCCCCcccccccC
Q 011163 204 QDNTKTHLVNILKGGV-VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYC 281 (492)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nG-vd~~~f~p~~~~~~~~~~~ 281 (492)
.-...+.++ +.||...+.++..++.+... | ++++++.++-|- +|. +...
T Consensus 111 -------~de~~R~~i~~la~lhf~~t~~~~~~L~~~--G--------~~~~rI~~vG~~~~D~--l~~~---------- 161 (346)
T PF02350_consen 111 -------PDEINRHAIDKLAHLHFAPTEEARERLLQE--G--------EPPERIFVVGNPGIDA--LLQN---------- 161 (346)
T ss_dssp -------THHHHHHHHHHH-SEEEESSHHHHHHHHHT--T----------GGGEEE---HHHHH--HHHH----------
T ss_pred -------chhhhhhhhhhhhhhhccCCHHHHHHHHhc--C--------CCCCeEEEEChHHHHH--HHHh----------
Confidence 113334444 56888888888877777652 2 256778777652 331 0000
Q ss_pred ccCccChHHHHHHH-HHHhCCCCCCCceEEEEEecccc---ccCHHHHHHHHHHHhHc-CcEEEEEecCCChhHHHHHHH
Q 011163 282 AEDMKGKTVCKVTL-QQQLGLSKDASTIVVGCIFSDVS---DVFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVS 356 (492)
Q Consensus 282 ~~~~~~~~~~~~~~-~~~lg~~~~~~~~~i~~~grl~~---~Kg~~~li~a~~~l~~~-~~~lvivG~g~~~~~~~~l~~ 356 (492)
++.....+ ...+.... .+..+++..-|... ......+.++++.+.+. ++++++... +.+.....+.+
T Consensus 162 ------~~~~~~~~~~~~i~~~~-~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~h-n~p~~~~~i~~ 233 (346)
T PF02350_consen 162 ------KEEIEEKYKNSGILQDA-PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLH-NNPRGSDIIIE 233 (346)
T ss_dssp ------HHTTCC-HHHHHHHHCT-TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE---S-HHHHHHHHH
T ss_pred ------HHHHhhhhhhHHHHhcc-CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEec-CCchHHHHHHH
Confidence 00000000 01110011 23344444444332 23456777777777765 788888873 23445556665
Q ss_pred HHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHH-HHhhcCCceEEEecCCCcccccccccccccceee
Q 011163 357 FQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPL-KALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSR 435 (492)
Q Consensus 357 ~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~l-EAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G 435 (492)
...++ ++++++......+...+++.|+++|-=| | .+. ||..+|+|+|.-+.. |--.+.+. .+.+
T Consensus 234 ~l~~~--~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~P~v~iR~~-geRqe~r~-----~~~n- 298 (346)
T PF02350_consen 234 KLKKY--DNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGKPVVNIRDS-GERQEGRE-----RGSN- 298 (346)
T ss_dssp HHTT---TTEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT--EEECSSS--S-HHHHH-----TTSE-
T ss_pred Hhccc--CCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCCeEEEecCC-CCCHHHHh-----hcce-
Confidence 55555 4899888888888889999999998655 3 466 999999999998541 44445444 2333
Q ss_pred eeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchhhHHHH
Q 011163 436 FISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDI 481 (492)
Q Consensus 436 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~ 481 (492)
.+++ .|++++.+++..++++++.+.++.. ....|.-.+.++++
T Consensus 299 vlv~-~~~~~I~~ai~~~l~~~~~~~~~~~--~~npYgdG~as~rI 341 (346)
T PF02350_consen 299 VLVG-TDPEAIIQAIEKALSDKDFYRKLKN--RPNPYGDGNASERI 341 (346)
T ss_dssp EEET-SSHHHHHHHHHHHHH-HHHHHHHHC--S--TT-SS-HHHHH
T ss_pred EEeC-CCHHHHHHHHHHHHhChHHHHhhcc--CCCCCCCCcHHHHH
Confidence 4554 7899999999999988665555432 12345545555554
No 130
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=0.00039 Score=67.90 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=133.1
Q ss_pred hhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCC-CCCCCcCCCCCcccccccCccCccChHHH
Q 011163 213 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYCAEDMKGKTVC 291 (492)
Q Consensus 213 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nG-vd~~~f~p~~~~~~~~~~~~~~~~~~~~~ 291 (492)
.+.+..+++-|.|++-|+..++...+ .| ..++.+.-|= +|. .|. ......
T Consensus 169 ~~~~~~~~~i~li~aQse~D~~Rf~~--LG----------a~~v~v~GNlKfd~---~~~--------------~~~~~~ 219 (419)
T COG1519 169 FLARLLFKNIDLILAQSEEDAQRFRS--LG----------AKPVVVTGNLKFDI---EPP--------------PQLAAE 219 (419)
T ss_pred HHHHHHHHhcceeeecCHHHHHHHHh--cC----------CcceEEecceeecC---CCC--------------hhhHHH
Confidence 45677788999999999887776554 33 1234433331 111 111 012235
Q ss_pred HHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHHHHhCC------
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD------ 363 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~~~~~~------ 363 (492)
...+|.+++.+ .++++..+....+ -+.+++++..+++. +..+++|=. +++-.+.+.+++++.+.
T Consensus 220 ~~~~r~~l~~~----r~v~iaaSTH~GE--eei~l~~~~~l~~~~~~~llIlVPR--HpERf~~v~~l~~~~gl~~~~rS 291 (419)
T COG1519 220 LAALRRQLGGH----RPVWVAASTHEGE--EEIILDAHQALKKQFPNLLLILVPR--HPERFKAVENLLKRKGLSVTRRS 291 (419)
T ss_pred HHHHHHhcCCC----CceEEEecCCCch--HHHHHHHHHHHHhhCCCceEEEecC--ChhhHHHHHHHHHHcCCeEEeec
Confidence 56778888764 3566666664444 34689999999874 677777763 34555666667666531
Q ss_pred --------CeEEEEeccCHHHHHHHHhcCCEEEEC-CCCCCCchHHHHHhhcCCceEEEecCCCccccccccccccccee
Q 011163 364 --------GIVIFVDSYDDALLHLIFSGSDIILCH-SFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFS 434 (492)
Q Consensus 364 --------~~v~~~~~~~~~~~~~~~~~adi~v~p-S~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~ 434 (492)
.+|..... =-++..+|+.||+.++- |..+--|-.+||+.++|+|+|.-.. +-...|+-+.-. ..+.
T Consensus 292 ~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~-~~Nf~ei~~~l~--~~ga 366 (419)
T COG1519 292 QGDPPFSDTDVLLGDT--MGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPY-TFNFSDIAERLL--QAGA 366 (419)
T ss_pred CCCCCCCCCcEEEEec--HhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCc-cccHHHHHHHHH--hcCC
Confidence 12222111 13567899999996665 6666668889999999999998432 012223221111 1123
Q ss_pred eeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 011163 435 RFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML 469 (492)
Q Consensus 435 G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~ 469 (492)
|+.++ |.+.+++++..+++|++.+.++++++..
T Consensus 367 ~~~v~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~ 399 (419)
T COG1519 367 GLQVE--DADLLAKAVELLLADEDKREAYGRAGLE 399 (419)
T ss_pred eEEEC--CHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45554 4778999999999999999999988864
No 131
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.07 E-value=0.0024 Score=66.05 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCCCCCceEEEEEec-cc-cccCHHHHHHHHH--HHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEE
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFS-DV-SDVFLENLKAVVR--GAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 367 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~gr-l~-~~Kg~~~li~a~~--~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~ 367 (492)
+.+.++++|++++. ..+.+..|. -. -.+....+++|++ ++. ++.++++.... +...+.+++..+..+.-.+.
T Consensus 400 ~~~~r~~lgl~~~~-~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a~--~~~~~~i~~~~~~~~~~~~~ 475 (608)
T PRK01021 400 NLSWKEQLHLPSDK-PIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSAN--PKYDHLILEVLQQEGCLHSH 475 (608)
T ss_pred HHHHHHHcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecCc--hhhHHHHHHHHhhcCCCCeE
Confidence 45568889996543 344456663 33 3444567788887 443 36788775422 22344555555432101233
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccc------------------ccccccc
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH------------------FAEFDHE 429 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e------------------~v~~~~~ 429 (492)
+..+ ++..+++++||+.+..| |.+.+|++.+|+|.|+.-- ++.+.- ++-..+.
T Consensus 476 ii~~---~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK-~s~Lty~Iak~Lvki~i~yIsLpNIIagr~V 546 (608)
T PRK01021 476 IVPS---QFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTCQ-LRPFDTFLAKYIFKIILPAYSLPNIILGSTI 546 (608)
T ss_pred EecC---cchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEe-cCHHHHHHHHHHHhccCCeeehhHHhcCCCc
Confidence 3322 11257899999999876 6899999999999987432 032222 1110000
Q ss_pred ccceeeee--ecCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 011163 430 STRFSRFI--SSTFGNISLSQALEEIKNNPLSWKRKIKD 466 (492)
Q Consensus 430 ~~g~~G~~--~~~~~~~~l~~ai~~~~~~~~~~~~~~~~ 466 (492)
. - =++ -+..+++.+++++ .++.|++.++++.+.
T Consensus 547 v-P--EllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 547 F-P--EFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDA 581 (608)
T ss_pred c-h--hhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 0 0 033 2456789999997 777888766665544
No 132
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.99 E-value=0.0012 Score=64.72 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=53.7
Q ss_pred CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeecCCC
Q 011163 364 GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFG 442 (492)
Q Consensus 364 ~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~~~ 442 (492)
+++.+.+ +..++...+|+.||++|.-+-+ .++.||+++|+|+|.... .+..|...... ....+.|...+..+
T Consensus 229 ~~v~~~~-~~~~~~~~~l~~ad~vI~~~G~----~t~~Ea~~~g~P~l~ip~--~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 229 ENVEIRR-ITTDNFKELIKNAELVITHGGF----SLISEALSLGKPLIVIPD--LGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCEEEEE-CChHHHHHHHHhCCEEEECCCh----HHHHHHHHcCCCEEEEcC--CCcccHHHHHHHHHHCCCEEEcChhh
Confidence 6777664 5445567899999999987743 358999999999999776 54444321000 00123467776666
Q ss_pred HHHHHHHHHHHhcC
Q 011163 443 NISLSQALEEIKNN 456 (492)
Q Consensus 443 ~~~l~~ai~~~~~~ 456 (492)
. ++.+++...+++
T Consensus 302 ~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 302 L-RLLEAILDIRNM 314 (321)
T ss_pred H-HHHHHHHhcccc
Confidence 6 444455444444
No 133
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.64 E-value=0.039 Score=51.79 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred HHHHHhCCCCCCCceEEEEE--e--ccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEE
Q 011163 294 TLQQQLGLSKDASTIVVGCI--F--SDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFV 369 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~--g--rl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~ 369 (492)
++.+++|+..+....++=.. + -....++.+.+.++++.+.+.. .|++- . .+..++.-+++ ++++..
T Consensus 171 evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ip-r-----~~~~~eife~~--~n~i~p 240 (346)
T COG1817 171 EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIP-R-----EKEQAEIFEGY--RNIIIP 240 (346)
T ss_pred HHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEec-C-----chhHHHHHhhh--ccccCC
Confidence 46688999875322211111 1 2445677777888888887654 44443 2 12333444444 233211
Q ss_pred eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecC-CCcccccccccccccceeeeeecCCCHHHHHH
Q 011163 370 DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSS-DIEFRHFAEFDHESTRFSRFISSTFGNISLSQ 448 (492)
Q Consensus 370 ~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~-~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ 448 (492)
.--.+.+ .++--|++++-.+ |.-.-||...|+|.|.+.-| .+++.+... +.|.++...|+.+..+
T Consensus 241 -k~~vD~l-~Llyya~lvig~g-----gTMarEaAlLGtpaIs~~pGkll~vdk~li-------e~G~~~~s~~~~~~~~ 306 (346)
T COG1817 241 -KKAVDTL-SLLYYATLVIGAG-----GTMAREAALLGTPAISCYPGKLLAVDKYLI-------EKGLLYHSTDEIAIVE 306 (346)
T ss_pred -cccccHH-HHHhhhheeecCC-----chHHHHHHHhCCceEEecCCccccccHHHH-------hcCceeecCCHHHHHH
Confidence 1111222 3444567777543 45578999999999999862 112333311 2467887777765555
Q ss_pred HHHHHhcCH
Q 011163 449 ALEEIKNNP 457 (492)
Q Consensus 449 ai~~~~~~~ 457 (492)
...+.+.++
T Consensus 307 ~a~~~l~~~ 315 (346)
T COG1817 307 YAVRNLKYR 315 (346)
T ss_pred HHHHHhhch
Confidence 555554544
No 134
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.63 E-value=0.0012 Score=57.42 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=28.5
Q ss_pred hHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCc
Q 011163 215 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTW 268 (492)
Q Consensus 215 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f 268 (492)
....+..||..++.+...+...-. ....|+.||+-|||++.+
T Consensus 129 ~l~~l~~~D~~isPT~wQ~~~fP~------------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 129 NLLALEQADAGISPTRWQRSQFPA------------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHHhCCcCcCCCHHHHHhCCH------------HHHcCcEEeecccchhhc
Confidence 445677899888877654332211 135799999999998754
No 135
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.036 Score=54.03 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=98.8
Q ss_pred ceEEEEEec-cccccCHHHHHHHHHHHhHc--CcEEEEEecCCChhHHHHHHHHH-HHhCC-CeEEEEeccCHHHHHHHH
Q 011163 307 TIVVGCIFS-DVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQ-EELKD-GIVIFVDSYDDALLHLIF 381 (492)
Q Consensus 307 ~~~i~~~gr-l~~~Kg~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~~l~~~~-~~~~~-~~v~~~~~~~~~~~~~~~ 381 (492)
..+++..-| -+-.+++..+++++.++.+. +..++. -.-+. ..+++.. ..+.. .+|.++.+.+......++
T Consensus 205 ~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viy-p~H~~----~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~ 279 (383)
T COG0381 205 KYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIY-PVHPR----PRVRELVLKRLKNVERVKLIDPLGYLDFHNLM 279 (383)
T ss_pred cEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEE-eCCCC----hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHH
Confidence 355555555 33448899999999988864 444444 32332 2333333 33433 589999899888888888
Q ss_pred hcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHH
Q 011163 382 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 382 ~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~ 461 (492)
..|-+.+-=| |-..=||-..|+|+++-+.. -.-+|.++ .| +-.++ ..+.+.+.+++..++++++.++
T Consensus 280 ~~a~~iltDS-----GgiqEEAp~lg~Pvl~lR~~-TERPE~v~-----ag-t~~lv-g~~~~~i~~~~~~ll~~~~~~~ 346 (383)
T COG0381 280 KNAFLILTDS-----GGIQEEAPSLGKPVLVLRDT-TERPEGVE-----AG-TNILV-GTDEENILDAATELLEDEEFYE 346 (383)
T ss_pred HhceEEEecC-----CchhhhHHhcCCcEEeeccC-CCCcccee-----cC-ceEEe-CccHHHHHHHHHHHhhChHHHH
Confidence 8886665444 34466999999999998762 22334343 12 22455 4567899999999999999998
Q ss_pred HHHHHHHhccCCchhhHHH
Q 011163 462 RKIKDAMLQDFSWDADCND 480 (492)
Q Consensus 462 ~~~~~a~~~~fsw~~~a~~ 480 (492)
+|+... ..|.-.+.+++
T Consensus 347 ~m~~~~--npYgdg~as~r 363 (383)
T COG0381 347 RMSNAK--NPYGDGNASER 363 (383)
T ss_pred HHhccc--CCCcCcchHHH
Confidence 887542 34444444444
No 136
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=97.46 E-value=0.00069 Score=63.89 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=38.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|+|++|+...+|+. .||+.+.+.+|.++|.+.-..|..+++..
T Consensus 1 ~~V~ll~EGtYPyv-~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPYV-RGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCCC-CCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 89999999999995 69999999999999988877777777664
No 137
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.29 E-value=0.0079 Score=60.65 Aligned_cols=138 Identities=14% Similarity=0.028 Sum_probs=80.3
Q ss_pred CceEEEEEeccccccCHHHHHH-HHHHHhHcCcEEEE-EecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhc
Q 011163 306 STIVVGCIFSDVSDVFLENLKA-VVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG 383 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~-a~~~l~~~~~~lvi-vG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 383 (492)
+..+++..|....... . +++ +++.+.+.+.++++ .|.+.+ .+.++ .. .+++.+.+..+.. .++..
T Consensus 225 ~~~v~vs~Gs~~~~~~-~-~~~~~~~al~~~~~~~i~~~g~~~~---~~~~~----~~-~~~v~~~~~~p~~---~ll~~ 291 (392)
T TIGR01426 225 RPVVLISLGTVFNNQP-S-FYRTCVEAFRDLDWHVVLSVGRGVD---PADLG----EL-PPNVEVRQWVPQL---EILKK 291 (392)
T ss_pred CCEEEEecCccCCCCH-H-HHHHHHHHHhcCCCeEEEEECCCCC---hhHhc----cC-CCCeEEeCCCCHH---HHHhh
Confidence 3456778888644332 2 333 33333334666554 443321 11121 23 3678776555542 67899
Q ss_pred CCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC--CCHHHHHHHHHHHhcCHHHHH
Q 011163 384 SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST--FGNISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 384 adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~--~~~~~l~~ai~~~~~~~~~~~ 461 (492)
||++|..+-+ .+++||+++|+|.|+... .+=....-.-.. ..+.|..+.. -++++++++|+++++|++.++
T Consensus 292 ~~~~I~hgG~----~t~~Eal~~G~P~v~~p~--~~dq~~~a~~l~-~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 292 ADAFITHGGM----NSTMEALFNGVPMVAVPQ--GADQPMTARRIA-ELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAE 364 (392)
T ss_pred CCEEEECCCc----hHHHHHHHhCCCEEecCC--cccHHHHHHHHH-HCCCEEEeccccCCHHHHHHHHHHHhcCHHHHH
Confidence 9999977642 468999999999999765 322221110000 1124555543 356899999999999987554
Q ss_pred HH
Q 011163 462 RK 463 (492)
Q Consensus 462 ~~ 463 (492)
++
T Consensus 365 ~~ 366 (392)
T TIGR01426 365 RL 366 (392)
T ss_pred HH
Confidence 44
No 138
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.066 Score=51.80 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=111.7
Q ss_pred cCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHH
Q 011163 253 QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGA 332 (492)
Q Consensus 253 ~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l 332 (492)
..+...+++++|.+.|+|.... .....-+.++|...+. ..+.++++
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~d-----------------------------a~~~~dL~~ign~~pD-----r~e~~ke~ 205 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPD-----------------------------ASYDVDLNLIGNPYPD-----RVEEIKEF 205 (373)
T ss_pred ccceeccCccCCchhcccCCcc-----------------------------ccceeeeEEecCCCcc-----HHHHHHHH
Confidence 3577889999999999886311 0111236677876665 33444333
Q ss_pred hH-------cCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCH-HHHHHHHhcCCEEEECCC---CCCC---ch
Q 011163 333 KM-------RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDD-ALLHLIFSGSDIILCHSF---HDPL---LQ 398 (492)
Q Consensus 333 ~~-------~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~adi~v~pS~---~E~~---gl 398 (492)
.- .+-++...|.+ +-..+.. ... ..++...+.+.. +..+..++.-|+.+.=++ .++. .+
T Consensus 206 ~~~ps~kl~v~rr~~~~g~~----y~~~~~~--~~~-~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~ 278 (373)
T COG4641 206 FVEPSFKLMVDRRFYVLGPR----YPDDIWG--RTW-EPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTN 278 (373)
T ss_pred hhccchhhhccceeeecCCc----cchhhhc--ccc-cchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchh
Confidence 31 13456666643 1111110 000 123333444444 566677777788766554 2333 67
Q ss_pred HHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCch
Q 011163 399 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 475 (492)
Q Consensus 399 v~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~---~~fsw~ 475 (492)
-+.|+++||.+.+.+.. -++.-.+. .|.. ++-..|..++.++++.++..++.++++++.+.+ ..|+-+
T Consensus 279 RvFeiagc~~~liT~~~--~~~e~~f~-----pgk~--~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~ 349 (373)
T COG4641 279 RVFEIAGCGGFLITDYW--KDLEKFFK-----PGKD--IIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYE 349 (373)
T ss_pred hHHHHhhcCCccccccH--HHHHHhcC-----Cchh--eEEecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHH
Confidence 78999999997776655 44444444 2332 333568889999999999999999999998875 458887
Q ss_pred hhHHHHHHHHHH
Q 011163 476 ADCNDIHISAYT 487 (492)
Q Consensus 476 ~~a~~~~~~~Y~ 487 (492)
.-+..+ .+.-.
T Consensus 350 ~r~~~~-~~~i~ 360 (373)
T COG4641 350 ERIFKL-LNEIA 360 (373)
T ss_pred HHHHHH-HHHHH
Confidence 777663 44433
No 139
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.84 E-value=0.2 Score=49.24 Aligned_cols=91 Identities=10% Similarity=-0.000 Sum_probs=56.9
Q ss_pred eEEEEEecc-c-cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 308 IVVGCIFSD-V-SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 308 ~~i~~~grl-~-~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
.+.++-|.- . -.+-+..++++++++.+...++++.|.. .. +.+++...+. ..+.+.+ ...++|+.||
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~---~~-~~i~~~~~~~--~~~~~~~-----~~~~~m~~aD 237 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF---KG-KDLKEIYGDI--SEFEISY-----DTHKALLEAE 237 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC---cH-HHHHHHHhcC--CCcEEec-----cHHHHHHhhh
Confidence 344555542 2 2244455668888887655677777732 22 4455544332 2333331 2247899999
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
+.+..| |.+.+|++.+|+|.|+.-
T Consensus 238 lal~~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 238 FAFICS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred HHHhcC-----cHHHHHHHHhCCCEEEEE
Confidence 999876 578889999999999854
No 140
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.70 E-value=0.52 Score=45.34 Aligned_cols=97 Identities=11% Similarity=0.204 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc-cc-ccccc
Q 011163 351 SRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HF-AEFDH 428 (492)
Q Consensus 351 ~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~-e~-v~~~~ 428 (492)
.+.+...+.+. .+|... .|..+. ..++.+|+..|.-+-| .+..|=+++|||.+.-.- +... |. +....
T Consensus 266 r~~l~~~A~~~--p~i~I~-~f~~~~-~~ll~gA~~vVSm~GY----NTvCeILs~~k~aLivPr--~~p~eEQliRA~R 335 (400)
T COG4671 266 RQKLLASAPKR--PHISIF-EFRNDF-ESLLAGARLVVSMGGY----NTVCEILSFGKPALIVPR--AAPREEQLIRAQR 335 (400)
T ss_pred HHHHHHhcccC--CCeEEE-EhhhhH-HHHHHhhheeeecccc----hhhhHHHhCCCceEEecc--CCCcHHHHHHHHH
Confidence 34444444443 567654 565544 4789999999966655 457899999999887654 3333 32 21100
Q ss_pred -cccceeeeeec-CCCHHHHHHHHHHHhcCH
Q 011163 429 -ESTRFSRFISS-TFGNISLSQALEEIKNNP 457 (492)
Q Consensus 429 -~~~g~~G~~~~-~~~~~~l~~ai~~~~~~~ 457 (492)
+.-|...++-+ .-.++.|+++|..+++-|
T Consensus 336 l~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 336 LEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred HHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 00122334433 234678999999988743
No 141
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.44 E-value=0.094 Score=52.92 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=95.5
Q ss_pred CceEEEEEeccccccCHHHHHHHHH-HHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcC
Q 011163 306 STIVVGCIFSDVSDVFLENLKAVVR-GAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 384 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~a~~-~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 384 (492)
+.++++..|..... ..+++.+. .+...+.++++.. |+.+. .+ ... ++|+.....++.. +++..|
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~~l~~~vi~~~-~~~~~---~~----~~~-p~n~~v~~~~p~~---~~l~~a 301 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALADLDVRVIVSL-GGARD---TL----VNV-PDNVIVADYVPQL---ELLPRA 301 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHhcCCcEEEEec-ccccc---cc----ccC-CCceEEecCCCHH---HHhhhc
Confidence 34666777776655 34444443 3434588888887 42111 00 122 3677766555554 468999
Q ss_pred CEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeec--CCCHHHHHHHHHHHhcCHHHHH
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISS--TFGNISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~--~~~~~~l~~ai~~~~~~~~~~~ 461 (492)
|++|...- -.+..||+..|+|+|+-.. + .|.-.... ...-+.|...+ .-+++.++++|+++++|+...+
T Consensus 302 d~vI~hGG----~gtt~eaL~~gvP~vv~P~--~--~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~ 373 (406)
T COG1819 302 DAVIHHGG----AGTTSEALYAGVPLVVIPD--G--ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRR 373 (406)
T ss_pred CEEEecCC----cchHHHHHHcCCCEEEecC--C--cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHH
Confidence 99998854 2467899999999999765 3 44411100 00123466555 6788999999999999987665
Q ss_pred HHHHHHHh--ccCCchhhHHHHHHHHHHH
Q 011163 462 RKIKDAML--QDFSWDADCNDIHISAYTA 488 (492)
Q Consensus 462 ~~~~~a~~--~~fsw~~~a~~~~~~~Y~~ 488 (492)
...+.... ..-.-+.+++.+ +++..+
T Consensus 374 ~~~~~~~~~~~~~g~~~~a~~l-e~~~~~ 401 (406)
T COG1819 374 AAERLAEEFKEEDGPAKAADLL-EEFARE 401 (406)
T ss_pred HHHHHHHHhhhcccHHHHHHHH-HHHHhc
Confidence 54433322 344444455553 555543
No 142
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=96.24 E-value=0.021 Score=42.90 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCCCEEEEcCchhhhHHHHHHHHHhhcCCCCCcEEEEecCC
Q 011163 135 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNL 176 (492)
Q Consensus 135 ~~~pDiVh~h~~~~~~~~~~~~~~~~~~~~~~~~~v~t~H~~ 176 (492)
+++.||||.|...+.+.--.+.. .+..|.++|+|=|++
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~h----A~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILH----ARTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHH----HHhCCCcEEeecccc
Confidence 58999999998655444322211 224799999999975
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.94 E-value=0.12 Score=50.88 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEec-cccccCH--HHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEE
Q 011163 291 CKVTLQQQLGLSKDASTIVVGCIFS-DVSDVFL--ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 367 (492)
Q Consensus 291 ~~~~~~~~lg~~~~~~~~~i~~~gr-l~~~Kg~--~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~ 367 (492)
.+..+...++++.+ +..+++..|. ..+.|.+ +...+.++.+.+.+.++++.| +++ ..+..+++.+..+...+.
T Consensus 160 ~~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G-~~~--e~~~~~~i~~~~~~~~~~ 235 (334)
T TIGR02195 160 EQAAALAKFGLDTE-RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFG-SAK--DHPAGNEIEALLPGELRN 235 (334)
T ss_pred HHHHHHHHcCCCCC-CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEE-Chh--hHHHHHHHHHhCCccccc
Confidence 34445666776532 2345555554 3345544 477777777766678999999 432 233344454444212233
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
+.+..+-.++..+++.||++|-..- |..-+ |.|.|+|+|+--
T Consensus 236 l~g~~sL~el~ali~~a~l~I~~DS----Gp~Hl-AaA~~~P~i~lf 277 (334)
T TIGR02195 236 LAGETSLDEAVDLIALAKAVVTNDS----GLMHV-AAALNRPLVALY 277 (334)
T ss_pred CCCCCCHHHHHHHHHhCCEEEeeCC----HHHHH-HHHcCCCEEEEE
Confidence 4455566788899999999997743 55555 779999999853
No 144
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.88 E-value=1.4 Score=40.55 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHhCCCCCCCceEEEEEeccccccCH-----HHHHHHHHHHh-HcCcEEEEEecCCChhHHHHHHHHHHH-hCCCeE
Q 011163 294 TLQQQLGLSKDASTIVVGCIFSDVSDVFL-----ENLKAVVRGAK-MRGIQFVFTGTNKLPSASRALVSFQEE-LKDGIV 366 (492)
Q Consensus 294 ~~~~~lg~~~~~~~~~i~~~grl~~~Kg~-----~~li~a~~~l~-~~~~~lvivG~g~~~~~~~~l~~~~~~-~~~~~v 366 (492)
+..++++ +. .+..+-+++|.-++.-.+ +.+..++.+.. +....+++--+...+ +..+.+.+. ++..-.
T Consensus 151 e~~~~~~-p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp---~~~~s~l~~~l~s~~~ 225 (329)
T COG3660 151 EAFKHLL-PL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTP---DTVKSILKNNLNSSPG 225 (329)
T ss_pred HHHHhhC-CC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCc---HHHHHHHHhccccCce
Confidence 3444554 22 344667788875555443 23333333333 246788887654332 234444443 332344
Q ss_pred EEEecc--CHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 367 IFVDSY--DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 367 ~~~~~~--~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.++..- ...-...+++.||.++.+--.-+ -+-||.+.|+||.+...
T Consensus 226 i~w~~~d~g~NPY~~~La~Adyii~TaDSin---M~sEAasTgkPv~~~~~ 273 (329)
T COG3660 226 IVWNNEDTGYNPYIDMLAAADYIISTADSIN---MCSEAASTGKPVFILEP 273 (329)
T ss_pred eEeCCCCCCCCchHHHHhhcceEEEecchhh---hhHHHhccCCCeEEEec
Confidence 444433 23345688999999998754222 25799999999988665
No 145
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.77 E-value=0.46 Score=45.08 Aligned_cols=159 Identities=6% Similarity=-0.097 Sum_probs=99.6
Q ss_pred EEec-cccccCHHHHHHHHHHHhHcCcEEEEE-ecC-CChhHHHHHHHHHHHhCC-CeEEEEecc-CHHHHHHHHhcCCE
Q 011163 312 CIFS-DVSDVFLENLKAVVRGAKMRGIQFVFT-GTN-KLPSASRALVSFQEELKD-GIVIFVDSY-DDALLHLIFSGSDI 386 (492)
Q Consensus 312 ~~gr-l~~~Kg~~~li~a~~~l~~~~~~lviv-G~g-~~~~~~~~l~~~~~~~~~-~~v~~~~~~-~~~~~~~~~~~adi 386 (492)
-+|. =++.-.+...++++.+....++++++- |-+ ++..|.+++++.++++-+ +++..+..+ +-++..++++.||+
T Consensus 150 lvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl 229 (322)
T PRK02797 150 LVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDL 229 (322)
T ss_pred EEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCE
Confidence 3554 345555666666666665567777664 432 356788888888887654 688766544 66777899999999
Q ss_pred EEECC-CCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCH--HHHHHHHHHHhcCHHHHHHH
Q 011163 387 ILCHS-FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN--ISLSQALEEIKNNPLSWKRK 463 (492)
Q Consensus 387 ~v~pS-~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~--~~l~~ai~~~~~~~~~~~~~ 463 (492)
.++-- +-++.|..++ .+..|+|++.++.. .-..++.+. |.. ++|+.++- ..+.++ .+++
T Consensus 230 ~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n-~fwqdl~e~-----gv~-Vlf~~d~L~~~~v~e~----------~rql 291 (322)
T PRK02797 230 GYFIFARQQGIGTLCL-LIQLGKPVVLSRDN-PFWQDLTEQ-----GLP-VLFTGDDLDEDIVREA----------QRQL 291 (322)
T ss_pred EEEeechhhHHhHHHH-HHHCCCcEEEecCC-chHHHHHhC-----CCe-EEecCCcccHHHHHHH----------HHHH
Confidence 99886 4799998776 88999999998751 333444332 222 33443332 222221 1122
Q ss_pred HHHHHh-ccCCchhhHHHHHHHHHHHH
Q 011163 464 IKDAML-QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 464 ~~~a~~-~~fsw~~~a~~~~~~~Y~~l 489 (492)
....+. -.|+-++..+. +..++...
T Consensus 292 ~~~dk~~I~Ff~pn~~~~-W~~~l~~~ 317 (322)
T PRK02797 292 ASVDKNIIAFFSPNYLQG-WRNALAIA 317 (322)
T ss_pred HhhCcceeeecCHhHHHH-HHHHHHHh
Confidence 222222 23999998888 47787754
No 146
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.67 E-value=0.19 Score=49.80 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=65.1
Q ss_pred ceEEEEEeccccccCH--HHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCe-EEEEeccCHHHHHHHHhc
Q 011163 307 TIVVGCIFSDVSDVFL--ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGI-VIFVDSYDDALLHLIFSG 383 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~--~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 383 (492)
..+++..|.-.+.|.+ +...+.++.+.+.+.++++.| |+.....+..+++.+.....+ +.+.|..+-.++..+++.
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~g-gp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTS-GPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEc-CCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 3555666664455554 467777777766678999998 542111223344444332223 334555677788899999
Q ss_pred CCEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 384 SDIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 384 adi~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
||++|-..- |..-+ |.|.|+|+|+--
T Consensus 263 a~l~v~nDS----Gp~Hl-AaA~g~P~v~lf 288 (352)
T PRK10422 263 AQLFIGVDS----APAHI-AAAVNTPLICLF 288 (352)
T ss_pred CCEEEecCC----HHHHH-HHHcCCCEEEEE
Confidence 999997743 55555 778999999853
No 147
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.38 E-value=1.7 Score=46.78 Aligned_cols=185 Identities=7% Similarity=-0.044 Sum_probs=114.1
Q ss_pred CCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHh
Q 011163 254 DKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK 333 (492)
Q Consensus 254 ~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~ 333 (492)
..+..+|-|+|...|..... .........+++..+ .+..+++.+=|++.-||...=+.|++++.
T Consensus 239 ~~v~~~pigid~~r~v~~~~-----------~~~~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~L 302 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLE-----------LPYVGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQFL 302 (732)
T ss_pred eeeeecccccchHHhhcccc-----------chhHHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHHH
Confidence 45667888888766532210 000111233444444 23467888899999999988888988877
Q ss_pred Hc------CcEEEEEecCC---ChhH---HHHHHHHHHHhC----C---CeEEEE-eccCHHHHHHHHhcCCEEEECCCC
Q 011163 334 MR------GIQFVFTGTNK---LPSA---SRALVSFQEELK----D---GIVIFV-DSYDDALLHLIFSGSDIILCHSFH 393 (492)
Q Consensus 334 ~~------~~~lvivG~g~---~~~~---~~~l~~~~~~~~----~---~~v~~~-~~~~~~~~~~~~~~adi~v~pS~~ 393 (492)
.+ .+.++.+..+. ..++ ...+....++.+ . ..|+++ ..++..++-+++.-+|+++..|..
T Consensus 303 ~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~r 382 (732)
T KOG1050|consen 303 EEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWR 382 (732)
T ss_pred HhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccc
Confidence 52 34444444221 1111 222222222222 1 334433 456778888999999999999999
Q ss_pred CCCchHHHHHhhcC----CceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHH
Q 011163 394 DPLLQVPLKALKYG----AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRK 463 (492)
Q Consensus 394 E~~glv~lEAma~G----~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~ 463 (492)
+|..++.+|..+|. .+.|.+.- -|..+..++ + -.++.|-|.+.++.+|...+..++.-.++
T Consensus 383 dGmnl~~~e~i~~~~~~~~~lVlsef--~G~~~tl~d-----~--aivvnpw~~~~~~~~i~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 383 DGMNLVFLEYILCQENKKSVLVLSEF--IGDDTTLED-----A--AIVVNPWDGDEFAILISKALTMSDEEREL 447 (732)
T ss_pred cccchhhhHHHHhhcccCCceEEeee--ccccccccc-----c--CEEECCcchHHHHHHHHHHhhcCHHHHhh
Confidence 99999999998774 44666655 444444432 1 25677888889999999988765543333
No 148
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=95.37 E-value=0.21 Score=52.05 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=81.6
Q ss_pred ceEEEEEecccc-----ccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHH
Q 011163 307 TIVVGCIFSDVS-----DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF 381 (492)
Q Consensus 307 ~~~i~~~grl~~-----~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 381 (492)
..+++..|.... .+-...+++|++++ +.++++...+.. .. ... ++||.+....+.. +++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~~~~---~~------~~~-p~Nv~i~~w~Pq~---~lL 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYDGEV---EA------INL-PANVLTQKWFPQR---AVL 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEECCCc---Cc------ccC-CCceEEecCCCHH---HHh
Confidence 366777787543 22244555666554 457777663321 11 123 3788877777764 456
Q ss_pred --hcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeecC--CCHHHHHHHHHHHhcC
Q 011163 382 --SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISST--FGNISLSQALEEIKNN 456 (492)
Q Consensus 382 --~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~--~~~~~l~~ai~~~~~~ 456 (492)
..+++||.- |-..+..||+.+|+|+|+... ..|...... ....+.|...+. -++++|.++|.++++|
T Consensus 361 ~hp~v~~fItH----GG~~s~~Eal~~GvP~v~iP~----~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 361 KHKNVKAFVTQ----GGVQSTDEAIDALVPMVGLPM----MGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred cCCCCCEEEec----CCcccHHHHHHcCCCEEECCC----CccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC
Confidence 558888854 335678999999999999654 334322110 001234666654 3568999999999999
Q ss_pred HHHHHHHH
Q 011163 457 PLSWKRKI 464 (492)
Q Consensus 457 ~~~~~~~~ 464 (492)
|...++..
T Consensus 433 ~~y~~~a~ 440 (507)
T PHA03392 433 PKYRKNLK 440 (507)
T ss_pred HHHHHHHH
Confidence 87655443
No 149
>PLN02448 UDP-glycosyltransferase family protein
Probab=95.29 E-value=0.35 Score=49.78 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=76.8
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCE
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 386 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi 386 (492)
..+++..|..... ..+.+-+.+.-+...+..++++..++ ...+.+. . .+++.+.+..++. ++++..++
T Consensus 275 ~vvyvsfGs~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~----~~~~~~~---~-~~~~~v~~w~pQ~---~iL~h~~v 342 (459)
T PLN02448 275 SVLYVSLGSFLSV-SSAQMDEIAAGLRDSGVRFLWVARGE----ASRLKEI---C-GDMGLVVPWCDQL---KVLCHSSV 342 (459)
T ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhCCCCEEEEEcCc----hhhHhHh---c-cCCEEEeccCCHH---HHhccCcc
Confidence 4566777765421 22333333333434467888876332 1112221 1 2466656555554 45777776
Q ss_pred EEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc-c-ceeeeeec-------CCCHHHHHHHHHHHhcCH
Q 011163 387 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES-T-RFSRFISS-------TFGNISLSQALEEIKNNP 457 (492)
Q Consensus 387 ~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~-~-g~~G~~~~-------~~~~~~l~~ai~~~~~~~ 457 (492)
.++=+. +--.+.+||+++|+|+|+-.. . .|........ . -+.|+-+. ..+.+++++++++++.++
T Consensus 343 ~~fvtH--gG~nS~~eal~~GvP~l~~P~--~--~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 343 GGFWTH--CGWNSTLEAVFAGVPMLTFPL--F--WDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ceEEec--CchhHHHHHHHcCCCEEeccc--c--ccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 333343 334678999999999999765 2 3321100000 1 01244432 236689999999999864
Q ss_pred -HHHHHHHHHHH
Q 011163 458 -LSWKRKIKDAM 468 (492)
Q Consensus 458 -~~~~~~~~~a~ 468 (492)
+.-+++++++.
T Consensus 417 ~~~~~~~r~~a~ 428 (459)
T PLN02448 417 SEEGKEMRRRAK 428 (459)
T ss_pred chhHHHHHHHHH
Confidence 33344444443
No 150
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.18 E-value=0.54 Score=45.29 Aligned_cols=103 Identities=7% Similarity=-0.026 Sum_probs=72.5
Q ss_pred EEec-cccccCHHHHHHHHHHHhHcCcEEEE-EecCC-ChhHHHHHHHHHHHhCC-CeEEEEe-ccCHHHHHHHHhcCCE
Q 011163 312 CIFS-DVSDVFLENLKAVVRGAKMRGIQFVF-TGTNK-LPSASRALVSFQEELKD-GIVIFVD-SYDDALLHLIFSGSDI 386 (492)
Q Consensus 312 ~~gr-l~~~Kg~~~li~a~~~l~~~~~~lvi-vG~g~-~~~~~~~l~~~~~~~~~-~~v~~~~-~~~~~~~~~~~~~adi 386 (492)
-+|. -++.-++-..++++.+....+.++++ .|-|+ +..|.+++.+.++++-+ +++..+. ..+-++.-++++.||+
T Consensus 189 LvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl 268 (360)
T PF07429_consen 189 LVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDL 268 (360)
T ss_pred EEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCE
Confidence 3554 33555555555555544334677665 34332 35688888888887633 5776554 5577888899999999
Q ss_pred EEECCC-CCCCchHHHHHhhcCCceEEEec
Q 011163 387 ILCHSF-HDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 387 ~v~pS~-~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.++... -++.|..++ .+.+|+||+.++.
T Consensus 269 ~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~ 297 (360)
T PF07429_consen 269 GIFNHNRQQGIGNICL-LLQLGKKVFLSRD 297 (360)
T ss_pred EEEeechhhhHhHHHH-HHHcCCeEEEecC
Confidence 999985 799998766 8999999999987
No 151
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.10 E-value=0.14 Score=47.91 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=57.9
Q ss_pred ceEEEEEeccccccCHH--HHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcC
Q 011163 307 TIVVGCIFSDVSDVFLE--NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 384 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~--~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 384 (492)
..++++.|.-.+.|.+. ...+.++.+.+...++++.| ++.....+...++.+..+...+.+.+..+-.++..+++.|
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLG-GPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEc-cchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 34555666544666544 36777777765567899999 4321123334444444321245555556667888999999
Q ss_pred CEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
|++|.+.- |..-+ |.|.|+|+|+--
T Consensus 185 ~~~I~~Dt----g~~Hl-A~a~~~p~v~lf 209 (247)
T PF01075_consen 185 DLVIGNDT----GPMHL-AAALGTPTVALF 209 (247)
T ss_dssp SEEEEESS----HHHHH-HHHTT--EEEEE
T ss_pred CEEEecCC----hHHHH-HHHHhCCEEEEe
Confidence 99998843 55555 888999999863
No 152
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.98 E-value=0.4 Score=47.32 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=63.4
Q ss_pred eEEEEEeccccccC--HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEE-EEeccCHHHHHHHHhcC
Q 011163 308 IVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI-FVDSYDDALLHLIFSGS 384 (492)
Q Consensus 308 ~~i~~~grl~~~Kg--~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~a 384 (492)
.+++..|.-.+.|. .+...+.++.+.+.+.++++.| |++....+..+++.+..+..++. +.|..+-.++..+++.|
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g-~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 261 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTS-GPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHA 261 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEec-CCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhC
Confidence 45555564334444 4466666666665678999998 54322222344444443223333 45555777888999999
Q ss_pred CEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
|++|-..- |..-+ |.|.|+|+|+--
T Consensus 262 ~l~Vs~DS----Gp~Hl-AaA~g~p~v~Lf 286 (344)
T TIGR02201 262 RLFIGVDS----VPMHM-AAALGTPLVALF 286 (344)
T ss_pred CEEEecCC----HHHHH-HHHcCCCEEEEE
Confidence 99997743 55555 888999999853
No 153
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.27 E-value=0.42 Score=45.60 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=63.7
Q ss_pred EEEEEeccc--cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhC-CCeEEEEeccCHHHHHHHHhcCC
Q 011163 309 VVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 309 ~i~~~grl~--~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
+++..|.-. +.-..+...+.++.+.+.+.++++.| +++ ..+..+++.+..+ ...+.+.+..+-.++..+++.||
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g-~~~--e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG-GPA--ERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe-chh--hHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 344444433 34445678888888876689999999 432 2344445544431 12333445556677889999999
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
++|.+. .|.+-+ |.+.|+|+|+--
T Consensus 201 l~I~~D----sg~~Hl-A~a~~~p~i~l~ 224 (279)
T cd03789 201 LVVTND----SGPMHL-AAALGTPTVALF 224 (279)
T ss_pred EEEeeC----CHHHHH-HHHcCCCEEEEE
Confidence 999885 366666 468999999864
No 154
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=94.15 E-value=0.024 Score=49.50 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=54.6
Q ss_pred CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccc--ccccccc-cccceeeeeecC
Q 011163 364 GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR--HFAEFDH-ESTRFSRFISST 440 (492)
Q Consensus 364 ~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~--e~v~~~~-~~~g~~G~~~~~ 440 (492)
.+|.+++..+ + ...+|+.||++|.- +-+.++.|++++|+|.|+-.. .+.. +...+.. ......|..+..
T Consensus 55 ~~v~~~~~~~-~-m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~--~~~~~~~q~~na~~~~~~g~~~~~~~ 126 (167)
T PF04101_consen 55 PNVKVFGFVD-N-MAELMAAADLVISH----AGAGTIAEALALGKPAIVIPL--PGAADNHQEENAKELAKKGAAIMLDE 126 (167)
T ss_dssp CCCEEECSSS-S-HHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE----TTT-T-CHHHHHHHHHHCCCCCCSEC
T ss_pred CcEEEEechh-h-HHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCC--CCcchHHHHHHHHHHHHcCCccccCc
Confidence 4677664443 2 56899999999954 335789999999999998665 3321 1111100 001112333332
Q ss_pred --CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 011163 441 --FGNISLSQALEEIKNNPLSWKRKIKD 466 (492)
Q Consensus 441 --~~~~~l~~ai~~~~~~~~~~~~~~~~ 466 (492)
.+++.|.++|..+++++....++.++
T Consensus 127 ~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 127 SELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp CC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred ccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 33578999999999998876666544
No 155
>PLN02562 UDP-glycosyltransferase
Probab=94.13 E-value=0.79 Score=46.96 Aligned_cols=140 Identities=10% Similarity=0.006 Sum_probs=77.2
Q ss_pred ceEEEEEeccc---cccCHHHHHHHHHHHhHcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHh
Q 011163 307 TIVVGCIFSDV---SDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 307 ~~~i~~~grl~---~~Kg~~~li~a~~~l~~~~~~lviv-G~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 382 (492)
..+++..|... +.+-+..++.+++.. +.+++++ ..+....+.+.+. +.. .+|+.+.+..++. ++++
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~fiW~~~~~~~~~l~~~~~---~~~-~~~~~v~~w~PQ~---~iL~ 343 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEAS---GRPFIWVLNPVWREGLPPGYV---ERV-SKQGKVVSWAPQL---EVLK 343 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHC---CCCEEEEEcCCchhhCCHHHH---HHh-ccCEEEEecCCHH---HHhC
Confidence 35677777753 333344455555444 4576654 2111101111122 222 2566666666654 4577
Q ss_pred cCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc-c-ceeeeeecCCCHHHHHHHHHHHhcCHHHH
Q 011163 383 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES-T-RFSRFISSTFGNISLSQALEEIKNNPLSW 460 (492)
Q Consensus 383 ~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~-~-g~~G~~~~~~~~~~l~~ai~~~~~~~~~~ 460 (492)
..++.++=+. +--.+.+||+.+|+|+|+... ..|........ + -+.|+-+...+.+++++++++++.+++.+
T Consensus 344 h~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~----~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 344 HQAVGCYLTH--CGWNSTMEAIQCQKRLLCYPV----AGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred CCccceEEec--CcchhHHHHHHcCCCEEeCCc----ccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 7665443344 333678999999999999765 23331111000 1 12355555567789999999999887654
Q ss_pred HH
Q 011163 461 KR 462 (492)
Q Consensus 461 ~~ 462 (492)
++
T Consensus 418 ~~ 419 (448)
T PLN02562 418 ER 419 (448)
T ss_pred HH
Confidence 43
No 156
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.95 E-value=1.4 Score=43.62 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCCCCCceEEEEEec-cccccC--HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCC---Ce
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFS-DVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD---GI 365 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~gr-l~~~Kg--~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~---~~ 365 (492)
...+.+.+++..+ +..+.+..|. +.+.|. .+...+.++.+.+.+.++++.| |++ ..+..+++.+..+. .+
T Consensus 167 ~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~G-g~~--e~~~~~~i~~~~~~~~~~~ 242 (348)
T PRK10916 167 KSETCAAFSLSSE-RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFG-SAK--DHEAGNEILAALNTEQQAW 242 (348)
T ss_pred HHHHHHHcCCCCC-CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEe-CHH--hHHHHHHHHHhcccccccc
Confidence 3344555555322 2344455554 334444 4456777777765578999999 532 23334444444321 12
Q ss_pred -EEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 366 -VIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 366 -v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
+.+.+..+-.++..+++.||++|-..- |..-+ |.|.|+|+|+-=
T Consensus 243 ~~~l~g~~sL~el~ali~~a~l~I~nDT----Gp~Hl-AaA~g~P~valf 287 (348)
T PRK10916 243 CRNLAGETQLEQAVILIAACKAIVTNDS----GLMHV-AAALNRPLVALY 287 (348)
T ss_pred eeeccCCCCHHHHHHHHHhCCEEEecCC----hHHHH-HHHhCCCEEEEE
Confidence 333445566778899999999997743 55555 888999999753
No 157
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.74 E-value=0.61 Score=45.83 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=68.6
Q ss_pred eEEEEEe-ccccccCH--HHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcC
Q 011163 308 IVVGCIF-SDVSDVFL--ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 384 (492)
Q Consensus 308 ~~i~~~g-rl~~~Kg~--~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 384 (492)
.++++.| .....|.+ +...+.++.+.+...++++.| ++ +..+..+++.+.++ +.+.+.+..+-+++..+++.|
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g-~~--~e~e~~~~i~~~~~-~~~~l~~k~sL~e~~~li~~a 252 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFG-GP--DEEERAEEIAKGLP-NAVILAGKTSLEELAALIAGA 252 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEec-Ch--HHHHHHHHHHHhcC-CccccCCCCCHHHHHHHHhcC
Confidence 5566666 44455543 467777777776678999999 43 34566677777763 232245566667888999999
Q ss_pred CEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
|++|-+.- |+.-+ |.|.|+|+|+--
T Consensus 253 ~l~I~~DS----g~~Hl-AaA~~~P~I~iy 277 (334)
T COG0859 253 DLVIGNDS----GPMHL-AAALGTPTIALY 277 (334)
T ss_pred CEEEccCC----hHHHH-HHHcCCCEEEEE
Confidence 99998854 66666 889999999865
No 158
>PLN03004 UDP-glycosyltransferase
Probab=93.63 E-value=1.7 Score=44.44 Aligned_cols=142 Identities=11% Similarity=0.012 Sum_probs=76.7
Q ss_pred ceEEEEEeccc--cccCHHHHHHHHHHHhHcCcEEEEEecCCCh------hHHHHH-HHHHHHhCCCeEEEEeccCHHHH
Q 011163 307 TIVVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGTNKLP------SASRAL-VSFQEELKDGIVIFVDSYDDALL 377 (492)
Q Consensus 307 ~~~i~~~grl~--~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~------~~~~~l-~~~~~~~~~~~v~~~~~~~~~~~ 377 (492)
..++++.|... +.+-...|..+++.. +.+|+++=..+.. +..+.+ ....++....++...+..++.
T Consensus 271 sVvyvsfGS~~~~~~~q~~ela~gL~~s---~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~-- 345 (451)
T PLN03004 271 SVVFLCFGSLGLFSKEQVIEIAVGLEKS---GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQV-- 345 (451)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHC---CCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHH--
Confidence 45666777752 233344444444443 4466666532100 011101 111122222466656666664
Q ss_pred HHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cc-cceeeeeecC-----CCHHHHHHHH
Q 011163 378 HLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ES-TRFSRFISST-----FGNISLSQAL 450 (492)
Q Consensus 378 ~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~-~g~~G~~~~~-----~~~~~l~~ai 450 (492)
++++.+++..+=+. +--.+.+||+++|+|+|+... ..|...... .. .-+.|..++. -+.+++++++
T Consensus 346 -~iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~----~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av 418 (451)
T PLN03004 346 -PVLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPL----YAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRV 418 (451)
T ss_pred -HHhCCCccceEecc--CcchHHHHHHHcCCCEEeccc----cccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHH
Confidence 46888888444454 333689999999999999765 233311110 00 1134665542 3678999999
Q ss_pred HHHhcCHHHH
Q 011163 451 EEIKNNPLSW 460 (492)
Q Consensus 451 ~~~~~~~~~~ 460 (492)
++++++++.+
T Consensus 419 ~~vm~~~~~r 428 (451)
T PLN03004 419 QEIIGECPVR 428 (451)
T ss_pred HHHhcCHHHH
Confidence 9999876543
No 159
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.49 E-value=0.22 Score=38.98 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=55.2
Q ss_pred EEEEecCCChhHHHHHHHHHHHhCCCeEEEE---eccCHHH--HHHHHhcCCEEEECCCC---CCCchHHHHHhhcCCce
Q 011163 339 FVFTGTNKLPSASRALVSFQEELKDGIVIFV---DSYDDAL--LHLIFSGSDIILCHSFH---DPLLQVPLKALKYGAAP 410 (492)
Q Consensus 339 lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~---~~~~~~~--~~~~~~~adi~v~pS~~---E~~glv~lEAma~G~Pv 410 (492)
++|+| | .+.....+++..++++ ....++ ++..+.. ++..+..||++|++..+ ...-.+--+|-..|+|+
T Consensus 2 vliVG-G-~~~~~~~~~~~~~~~G-~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 2 VLIVG-G-REDRERRYKRILEKYG-GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred EEEEc-C-CcccHHHHHHHHHHcC-CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 57788 4 1245778888888885 444445 4444444 77888999999998753 44555667788899999
Q ss_pred EEEecCCCccccc
Q 011163 411 IAVTSSDIEFRHF 423 (492)
Q Consensus 411 V~~~~~~gg~~e~ 423 (492)
+-++. .|+..+
T Consensus 79 ~~~~~--~~~~~l 89 (97)
T PF10087_consen 79 IYSRS--RGVSSL 89 (97)
T ss_pred EEECC--CCHHHH
Confidence 99886 444443
No 160
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.29 E-value=8.4 Score=37.32 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCCCCCceEEEEEeccccccC--HH---HHHHHHHHHhHc-CcEEEEEecCCC-hhHHHHHHHHHHHhCCC
Q 011163 292 KVTLQQQLGLSKDASTIVVGCIFSDVSDVF--LE---NLKAVVRGAKMR-GIQFVFTGTNKL-PSASRALVSFQEELKDG 364 (492)
Q Consensus 292 ~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg--~~---~li~a~~~l~~~-~~~lvivG~g~~-~~~~~~l~~~~~~~~~~ 364 (492)
+.++..+++-.+ +..+.+.+|.-++... .+ .|++.+..+.+. +..+.|..+.-. ++.++.|++..+.. .
T Consensus 134 ~~~~~~~~~~l~--~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~--~ 209 (311)
T PF06258_consen 134 AAAWAPRLAALP--RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDN--P 209 (311)
T ss_pred HHhhhhhhccCC--CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCC--C
Confidence 344555555332 2344556665333222 22 455555555543 568988886433 34455555554432 5
Q ss_pred eEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 365 IVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 365 ~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.+.++.+-.+.-+..+|+.||.++++.-.- .| +-||.+.|+||.+...
T Consensus 210 ~~~~~~~~~~nPy~~~La~ad~i~VT~DSv--SM-vsEA~~tG~pV~v~~l 257 (311)
T PF06258_consen 210 GVYIWDGTGENPYLGFLAAADAIVVTEDSV--SM-VSEAAATGKPVYVLPL 257 (311)
T ss_pred ceEEecCCCCCcHHHHHHhCCEEEEcCccH--HH-HHHHHHcCCCEEEecC
Confidence 665555555555678999999999986522 23 5799999999999887
No 161
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.25 E-value=1.1 Score=43.73 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=63.9
Q ss_pred eEEEEEeccccccCH--HHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 308 IVVGCIFSDVSDVFL--ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~--~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
.++++.|.-.+.|.+ +...+.++.+.+++.++++.|.++ ...+..+++.+..+ +..+.+..+-.++..+++.||
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~--~e~~~~~~i~~~~~--~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND--AEKQRAERIAEALP--GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH--HHHHHHHHHHhhCC--CCeecCCCCHHHHHHHHHcCC
Confidence 455566653455554 467777777766678888885242 22334455555443 234456667677889999999
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
++|-+.- |..-+ |.|.|+|+|+--
T Consensus 257 l~I~~DS----gp~Hl-Aaa~g~P~i~lf 280 (319)
T TIGR02193 257 AVVGVDT----GLTHL-AAALDKPTVTLY 280 (319)
T ss_pred EEEeCCC----hHHHH-HHHcCCCEEEEE
Confidence 9998754 45455 778999999854
No 162
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=92.82 E-value=8.3 Score=36.03 Aligned_cols=145 Identities=12% Similarity=-0.054 Sum_probs=73.6
Q ss_pred EEEeccccccCHHHHHHHHHHHhHc-CcEEEEEecCCChhHHHHHHH-----------H-HHHhCC-CeEEEEeccCHHH
Q 011163 311 GCIFSDVSDVFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVS-----------F-QEELKD-GIVIFVDSYDDAL 376 (492)
Q Consensus 311 ~~~grl~~~Kg~~~li~a~~~l~~~-~~~lvivG~g~~~~~~~~l~~-----------~-~~~~~~-~~v~~~~~~~~~~ 376 (492)
.|+||....||+..+++.-++..+. +..-++-|-...+.....+.. . .....+ .-+..++.+-.++
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E 266 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSE 266 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHH
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHH
Confidence 7999999999999999988776653 677788773211211111111 0 001111 3466778887777
Q ss_pred HHHHHhcCCEEEECCC------CCCCchHHHHHhhcCCceEEEecCCCcccc-ccccccccccee-eeeecCCCHHHHHH
Q 011163 377 LHLIFSGSDIILCHSF------HDPLLQVPLKALKYGAAPIAVTSSDIEFRH-FAEFDHESTRFS-RFISSTFGNISLSQ 448 (492)
Q Consensus 377 ~~~~~~~adi~v~pS~------~E~~glv~lEAma~G~PvV~~~~~~gg~~e-~v~~~~~~~g~~-G~~~~~~~~~~l~~ 448 (492)
.-+.|+.+-+...-|. -+..-.+.+|..|||+-||--.. .|.-.- .++.....+... -+.|+..|-++-.+
T Consensus 267 ~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~-~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~e 345 (355)
T PF11440_consen 267 GLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKS-WGENNRFTLDGTRYIDHPYSAIYFDENDLESTVE 345 (355)
T ss_dssp HHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHH-HHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHH
T ss_pred HHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeecc-ccccceeeecCceeeccCcceeEeccchHHHHHH
Confidence 6678887666554442 24577889999999998776543 021111 111000001112 26778888888888
Q ss_pred HHHHHhcC
Q 011163 449 ALEEIKNN 456 (492)
Q Consensus 449 ai~~~~~~ 456 (492)
.|.++.++
T Consensus 346 kl~E~a~~ 353 (355)
T PF11440_consen 346 KLIEVANN 353 (355)
T ss_dssp HHHHHHT-
T ss_pred HHHHHhcc
Confidence 88777654
No 163
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.37 E-value=1.5 Score=42.83 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=61.7
Q ss_pred eEEEEEeccccccC--HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 308 IVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 308 ~~i~~~grl~~~Kg--~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
.+++..|.-.+.|. .+...+.++.+.+.+.++++.|+++ ...+..+++.+.. .++.+.+..+-.++..+++.||
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~--~e~~~~~~i~~~~--~~~~l~g~~sL~elaali~~a~ 255 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE--HEEQRAKRLAEGF--PYVEVLPKLSLEQVARVLAGAK 255 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH--HHHHHHHHHHccC--CcceecCCCCHHHHHHHHHhCC
Confidence 33334443233343 4467777777766678888864142 2233344444433 3455566667778889999999
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
++|-..- |..-+ |.|+|+|+|+-=
T Consensus 256 l~I~nDS----Gp~Hl-A~A~g~p~valf 279 (322)
T PRK10964 256 AVVSVDT----GLSHL-TAALDRPNITLY 279 (322)
T ss_pred EEEecCC----cHHHH-HHHhCCCEEEEE
Confidence 9998743 44445 888999999854
No 164
>PLN02670 transferase, transferring glycosyl groups
Probab=92.19 E-value=3.4 Score=42.58 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=49.9
Q ss_pred EEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccc-ccccceeeeeecC----
Q 011163 366 VIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-HESTRFSRFISST---- 440 (492)
Q Consensus 366 v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~-~~~~g~~G~~~~~---- 440 (492)
+.+.+..++. ++++...+..+=|. +--.+.+||+++|+|+|+... ..|..... .....+.|..++.
T Consensus 341 ~vv~~W~PQ~---~IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~v~~~g~Gv~l~~~~~~ 411 (472)
T PLN02670 341 MIHVGWVPQV---KILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPV----LNEQGLNTRLLHGKKLGLEVPRDERD 411 (472)
T ss_pred eEEeCcCCHH---HHhcCcccceeeec--CCcchHHHHHHcCCCEEeCcc----hhccHHHHHHHHHcCeeEEeeccccC
Confidence 3434555554 45776666333344 333679999999999999765 23331100 0001234665542
Q ss_pred --CCHHHHHHHHHHHhcCH
Q 011163 441 --FGNISLSQALEEIKNNP 457 (492)
Q Consensus 441 --~~~~~l~~ai~~~~~~~ 457 (492)
-+.+++++++++++.++
T Consensus 412 ~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 412 GSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred CcCcHHHHHHHHHHHhcCc
Confidence 34689999999999765
No 165
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=92.08 E-value=1.9 Score=42.92 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=91.0
Q ss_pred HHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHH
Q 011163 216 KGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL 295 (492)
Q Consensus 216 ~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (492)
.......|.+++.|+...+.+. +.++. ..+ .++..|.. ..|.+. ......+..+
T Consensus 129 ~~~~~~~d~~~~~s~~~~~~~~-~~f~~--------~~~--~i~~~G~P------R~D~l~---------~~~~~~~~~i 182 (369)
T PF04464_consen 129 KRNYRNYDYFIVSSEFEKEIFK-KAFGY--------PED--KILVTGYP------RNDYLF---------NKSKENRNRI 182 (369)
T ss_dssp HHHHTT-SEEEESSHHHHHHHH-HHTT----------GG--GEEES--G------GGHHHH---------HSTT-HHHHH
T ss_pred hhhccCCcEEEECCHHHHHHHH-HHhcc--------Ccc--eEEEeCCC------eEhHHh---------ccCHHHHHHH
Confidence 3456678888888887655443 33331 223 34455643 111110 1111236678
Q ss_pred HHHhCCCCCCCceEEEEEeccccccCH------H--HHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEE
Q 011163 296 QQQLGLSKDASTIVVGCIFSDVSDVFL------E--NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 367 (492)
Q Consensus 296 ~~~lg~~~~~~~~~i~~~grl~~~Kg~------~--~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~ 367 (492)
++.+|++.+ ..+|+++-.+.....- . .-++.+..+.+.++.|++-. +|............ .++|.
T Consensus 183 ~~~~~~~~~--~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~---Hp~~~~~~~~~~~~--~~~i~ 255 (369)
T PF04464_consen 183 KKKLGIDKD--KKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKP---HPNMKKKFKDFKED--NSNII 255 (369)
T ss_dssp HHHTT--SS---EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE-----SHHHHTT----TT---TTTEE
T ss_pred HHHhccCCC--CcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEe---Cchhhhchhhhhcc--CCcEE
Confidence 889998765 3467777544333221 1 12333333344577777765 33333222222111 26777
Q ss_pred EEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecC-------
Q 011163 368 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST------- 440 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~------- 440 (492)
+.... +.+..++..||++|.=. .-+..|++.+++|+|-..- ...+.-. ..|+.++.
T Consensus 256 ~~~~~--~~~~~ll~~aDiLITDy-----SSi~fD~~~l~KPiify~~---D~~~Y~~-------~rg~~~~~~~~~pg~ 318 (369)
T PF04464_consen 256 FVSDN--EDIYDLLAAADILITDY-----SSIIFDFLLLNKPIIFYQP---DLEEYEK-------ERGFYFDYEEDLPGP 318 (369)
T ss_dssp E-TT---S-HHHHHHT-SEEEESS------THHHHHGGGT--EEEE-T---TTTTTTT-------TSSBSS-TTTSSSS-
T ss_pred ECCCC--CCHHHHHHhcCEEEEec-----hhHHHHHHHhCCCEEEEec---cHHHHhh-------ccCCCCchHhhCCCc
Confidence 54332 35678899999999531 2368999999999996542 1222211 01233221
Q ss_pred --CCHHHHHHHHHHHhcCHHHHH
Q 011163 441 --FGNISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 441 --~~~~~l~~ai~~~~~~~~~~~ 461 (492)
.+.++|.++|+.+++++....
T Consensus 319 ~~~~~~eL~~~i~~~~~~~~~~~ 341 (369)
T PF04464_consen 319 IVYNFEELIEAIENIIENPDEYK 341 (369)
T ss_dssp EESSHHHHHHHHTTHHHHHHHTH
T ss_pred eeCCHHHHHHHHHhhhhCCHHHH
Confidence 356799999999877665443
No 166
>PLN02210 UDP-glucosyl transferase
Probab=91.97 E-value=3.1 Score=42.74 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=73.3
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC-ChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK-LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~-~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
..+++..|..... ..+.+-+.+.-+...+.+|+++-..+ .....+.+.+... .++....+..++. ++++.++
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~---~~~g~v~~w~PQ~---~iL~h~~ 342 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK---EGQGVVLEWSPQE---KILSHMA 342 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc---CCCeEEEecCCHH---HHhcCcC
Confidence 4667777876432 23444444444444567777643111 1111122322221 1233344555554 4677777
Q ss_pred --EEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-ccc-ceeeeeec------CCCHHHHHHHHHHHhc
Q 011163 386 --IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-EST-RFSRFISS------TFGNISLSQALEEIKN 455 (492)
Q Consensus 386 --i~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~-g~~G~~~~------~~~~~~l~~ai~~~~~ 455 (492)
+|+.-.-+ .+.+||+.+|+|+|+-.. ..|...... ..+ -+.|..+. .-+.+++++++++++.
T Consensus 343 vg~FitH~G~----nS~~Eai~~GVP~v~~P~----~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~ 414 (456)
T PLN02210 343 ISCFVTHCGW----NSTIETVVAGVPVVAYPS----WTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE 414 (456)
T ss_pred cCeEEeeCCc----ccHHHHHHcCCCEEeccc----ccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc
Confidence 55543322 468999999999999765 234321000 001 13455553 2366799999999997
Q ss_pred CHH
Q 011163 456 NPL 458 (492)
Q Consensus 456 ~~~ 458 (492)
+++
T Consensus 415 ~~~ 417 (456)
T PLN02210 415 GPA 417 (456)
T ss_pred Cch
Confidence 653
No 167
>PLN02764 glycosyltransferase family protein
Probab=91.64 E-value=4.1 Score=41.66 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=75.0
Q ss_pred CceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEec---CCCh---hHHHHHHHHHHHhCCCeEEEEeccCHHHHHH
Q 011163 306 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGT---NKLP---SASRALVSFQEELKDGIVIFVDSYDDALLHL 379 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~---g~~~---~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 379 (492)
+..++++.|.... -..+.+-+.+..|...+..++++=. +.+. .+.+.+.+..+ +..+...+..++.+
T Consensus 257 ~sVvyvsfGS~~~-~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~---grG~v~~~W~PQ~~--- 329 (453)
T PLN02764 257 DSVVFCALGSQVI-LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVK---GRGVVWGGWVQQPL--- 329 (453)
T ss_pred CceEEEeeccccc-CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhc---cCCcEEeCCCCHHH---
Confidence 4467778887633 1223455555555444444433321 1110 11111222111 12233345556543
Q ss_pred HHhcCCE--EEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc-c-ceeeeeecC-----CCHHHHHHHH
Q 011163 380 IFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES-T-RFSRFISST-----FGNISLSQAL 450 (492)
Q Consensus 380 ~~~~adi--~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~-~-g~~G~~~~~-----~~~~~l~~ai 450 (492)
+++...+ ||. . +--.+.+||+.+|+|+|+... ..|........ + -+.|+.+.. -+.+++++++
T Consensus 330 vL~h~~v~~Fvt--H--~G~nS~~Eal~~GVP~l~~P~----~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av 401 (453)
T PLN02764 330 ILSHPSVGCFVS--H--CGFGSMWESLLSDCQIVLVPQ----LGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAI 401 (453)
T ss_pred HhcCcccCeEEe--c--CCchHHHHHHHcCCCEEeCCc----ccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHH
Confidence 4666544 654 3 334679999999999999765 33431110000 1 123554422 3668999999
Q ss_pred HHHhcCH-HHHHHHHHHHH
Q 011163 451 EEIKNNP-LSWKRKIKDAM 468 (492)
Q Consensus 451 ~~~~~~~-~~~~~~~~~a~ 468 (492)
+++++++ +..+++.+++.
T Consensus 402 ~~vm~~~~~~g~~~r~~a~ 420 (453)
T PLN02764 402 NSVMKRDSEIGNLVKKNHT 420 (453)
T ss_pred HHHhcCCchhHHHHHHHHH
Confidence 9999765 33444444443
No 168
>PLN03007 UDP-glucosyltransferase family protein
Probab=91.24 E-value=4.8 Score=41.73 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=71.8
Q ss_pred CceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC-C--h---hHHHHHHHHHHHhCCCeEEEEeccCHHHHHH
Q 011163 306 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK-L--P---SASRALVSFQEELKDGIVIFVDSYDDALLHL 379 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~-~--~---~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 379 (492)
+..+++..|..... ....+.+.+..+...+.+|+++=..+ . . .+.+.+.+... ..++...+..++. +
T Consensus 285 ~svvyvsfGS~~~~-~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~---~~g~~v~~w~PQ~---~ 357 (482)
T PLN03007 285 DSVIYLSFGSVASF-KNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK---GKGLIIRGWAPQV---L 357 (482)
T ss_pred CceEEEeecCCcCC-CHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc---cCCEEEecCCCHH---H
Confidence 34667777876432 12344444444444456666543111 0 0 01112222211 2466656666654 4
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc--ccceeeeee----------cCCCHHHHH
Q 011163 380 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE--STRFSRFIS----------STFGNISLS 447 (492)
Q Consensus 380 ~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~--~~g~~G~~~----------~~~~~~~l~ 447 (492)
+++.+++-++=+. +--.+.+||+.+|+|+|+... ..|....... ..-..|+-+ +.-+.++++
T Consensus 358 iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~----~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~ 431 (482)
T PLN03007 358 ILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPV----GAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVE 431 (482)
T ss_pred HhccCccceeeec--CcchHHHHHHHcCCCeeeccc----hhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHH
Confidence 6787776333333 223679999999999999765 2333111000 000112221 123667999
Q ss_pred HHHHHHhcCH
Q 011163 448 QALEEIKNNP 457 (492)
Q Consensus 448 ~ai~~~~~~~ 457 (492)
+++++++.++
T Consensus 432 ~av~~~m~~~ 441 (482)
T PLN03007 432 KAVREVIVGE 441 (482)
T ss_pred HHHHHHhcCc
Confidence 9999999875
No 169
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=91.23 E-value=0.28 Score=43.96 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=29.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++-+ -..-+..|.++|.+.||+|.|++|....
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-------DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-------TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 99999888632 2334788999998889999999998653
No 170
>PLN02208 glycosyltransferase family protein
Probab=91.00 E-value=4.2 Score=41.57 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=79.1
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHc--CcEEEEEec-CC-C--hhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHH
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGT-NK-L--PSASRALVSFQEELKDGIVIFVDSYDDALLHLI 380 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~--~~~lvivG~-g~-~--~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 380 (492)
..++++.|.... -..+.+.+.+..+... +...++--+ +. + ..+.+.+.+..+ ..++...+..++. ++
T Consensus 252 sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~---~~g~~v~~W~PQ~---~i 324 (442)
T PLN02208 252 SVVFCSLGSQII-LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVK---GRGVVWGGWVQQP---LI 324 (442)
T ss_pred cEEEEecccccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHh---cCCcEeeccCCHH---HH
Confidence 466777887652 2344566665554322 333333211 10 0 011122332222 2355544556654 45
Q ss_pred HhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-ccc-ceeeeeecC-----CCHHHHHHHHHHH
Q 011163 381 FSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-EST-RFSRFISST-----FGNISLSQALEEI 453 (492)
Q Consensus 381 ~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~-g~~G~~~~~-----~~~~~l~~ai~~~ 453 (492)
++...+.++=|. +--.+.+||+++|+|+|+... ..|...... ..+ -+.|..++. -+.++++++|+++
T Consensus 325 L~H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~----~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~ 398 (442)
T PLN02208 325 LDHPSIGCFVNH--CGPGTIWESLVSDCQMVLIPF----LSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSV 398 (442)
T ss_pred hcCCccCeEEcc--CCchHHHHHHHcCCCEEecCc----chhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHH
Confidence 777776554455 333679999999999999765 334321110 001 234666643 3567999999999
Q ss_pred hcCH-HHHHHHHHHHH
Q 011163 454 KNNP-LSWKRKIKDAM 468 (492)
Q Consensus 454 ~~~~-~~~~~~~~~a~ 468 (492)
++++ +..+++.+++.
T Consensus 399 m~~~~e~g~~~r~~~~ 414 (442)
T PLN02208 399 MDKDSDLGKLVRSNHT 414 (442)
T ss_pred hcCCchhHHHHHHHHH
Confidence 9765 33445555543
No 171
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=90.89 E-value=2.3 Score=44.29 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=72.0
Q ss_pred CceEEEEEeccccccCHHH----HHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHH
Q 011163 306 STIVVGCIFSDVSDVFLEN----LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF 381 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~----li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 381 (492)
+..+++..|..... -.+. +++|++++ +.++++.=++.. .. .+ +.|+......++. +++
T Consensus 276 ~~vv~vsfGs~~~~-~~~~~~~~~~~~~~~~---~~~~iW~~~~~~---~~-------~l-~~n~~~~~W~PQ~---~lL 337 (500)
T PF00201_consen 276 KGVVYVSFGSIVSS-MPEEKLKEIAEAFENL---PQRFIWKYEGEP---PE-------NL-PKNVLIVKWLPQN---DLL 337 (500)
T ss_dssp TEEEEEE-TSSSTT--HHHHHHHHHHHHHCS---TTEEEEEETCSH---GC-------HH-HTTEEEESS--HH---HHH
T ss_pred CCEEEEecCcccch-hHHHHHHHHHHHHhhC---CCcccccccccc---cc-------cc-cceEEEeccccch---hhh
Confidence 44677788886532 2333 44444443 448888764421 11 12 1577766666654 456
Q ss_pred hcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccceeeeeecCC--CHHHHHHHHHHHhcCHH
Q 011163 382 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTF--GNISLSQALEEIKNNPL 458 (492)
Q Consensus 382 ~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g~~G~~~~~~--~~~~l~~ai~~~~~~~~ 458 (492)
+...+-++=+. |--.+.+||+.+|+|+|+-.. ..|...... ....+.|...+.. +.+.+.++|+++++|+.
T Consensus 338 ~hp~v~~fitH--gG~~s~~Ea~~~gvP~l~~P~----~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 338 AHPRVKLFITH--GGLNSTQEALYHGVPMLGIPL----FGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp TSTTEEEEEES----HHHHHHHHHCT--EEE-GC----STTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred hcccceeeeec--cccchhhhhhhccCCccCCCC----cccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 65544333344 445789999999999999654 344321100 0012235666543 45789999999999986
Q ss_pred HHHHHH
Q 011163 459 SWKRKI 464 (492)
Q Consensus 459 ~~~~~~ 464 (492)
..++..
T Consensus 412 y~~~a~ 417 (500)
T PF00201_consen 412 YKENAK 417 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 172
>PLN02173 UDP-glucosyl transferase family protein
Probab=90.73 E-value=4.3 Score=41.52 Aligned_cols=145 Identities=8% Similarity=0.048 Sum_probs=74.9
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCC-hhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL-PSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~-~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
..+++..|.... -..+.+.+.+.-+. +..++++=..+. ..+.+.+.+ +...+++.+.+..++. ++++...
T Consensus 265 svvyvsfGS~~~-~~~~~~~ela~gLs--~~~flWvvr~~~~~~lp~~~~~---~~~~~~~~i~~W~PQ~---~iL~H~~ 335 (449)
T PLN02173 265 SVVYIAFGSMAK-LSSEQMEEIASAIS--NFSYLWVVRASEESKLPPGFLE---TVDKDKSLVLKWSPQL---QVLSNKA 335 (449)
T ss_pred ceEEEEeccccc-CCHHHHHHHHHHhc--CCCEEEEEeccchhcccchHHH---hhcCCceEEeCCCCHH---HHhCCCc
Confidence 356677787542 22334444444443 334444432111 111111211 2212566666666653 4678777
Q ss_pred EEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc-ccc-eeeeeecC------CCHHHHHHHHHHHhcCH
Q 011163 386 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-STR-FSRFISST------FGNISLSQALEEIKNNP 457 (492)
Q Consensus 386 i~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~~g-~~G~~~~~------~~~~~l~~ai~~~~~~~ 457 (492)
+.++=+. +-..+.+||+++|+|+|+... ..|....... .+. +.|.-+.. -+.+++++++++++.++
T Consensus 336 v~~FvtH--cGwnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 336 IGCFMTH--CGWNSTMEGLSLGVPMVAMPQ----WTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE 409 (449)
T ss_pred cceEEec--CccchHHHHHHcCCCEEecCc----hhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC
Confidence 5444454 334789999999999999765 2333110000 010 23444421 15689999999999764
Q ss_pred HHHHHHHHHH
Q 011163 458 LSWKRKIKDA 467 (492)
Q Consensus 458 ~~~~~~~~~a 467 (492)
+ .+++.+++
T Consensus 410 ~-~~~~r~~a 418 (449)
T PLN02173 410 K-SKEMKENA 418 (449)
T ss_pred h-HHHHHHHH
Confidence 3 23444444
No 173
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.60 E-value=4.2 Score=41.72 Aligned_cols=137 Identities=9% Similarity=0.027 Sum_probs=72.7
Q ss_pred CceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEec-CC--Chh----HHHHHHHHHHHhCCCeEEEEeccCHHHHH
Q 011163 306 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGT-NK--LPS----ASRALVSFQEELKDGIVIFVDSYDDALLH 378 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~-g~--~~~----~~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 378 (492)
+..++++.|....- ..+.+.+.+.-|...+.+|+++=. +. ..+ +.+.+. ++. .+|....+..++.+
T Consensus 264 ~sVvyvsfGS~~~~-~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~---er~-~~~g~v~~w~PQ~~-- 336 (451)
T PLN02410 264 NSVIFVSLGSLALM-EINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFS---KII-SGRGYIVKWAPQKE-- 336 (451)
T ss_pred CcEEEEEccccccC-CHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHH---Hhc-cCCeEEEccCCHHH--
Confidence 34677777876521 233444444444443446666542 11 001 112222 222 24555555556543
Q ss_pred HHHhcCCE--EEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc-ccc-eeeeee-cCCCHHHHHHHHHHH
Q 011163 379 LIFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-STR-FSRFIS-STFGNISLSQALEEI 453 (492)
Q Consensus 379 ~~~~~adi--~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~~g-~~G~~~-~~~~~~~l~~ai~~~ 453 (492)
+++..++ ||.-.- -.+.+||+++|+|+|+... ..|....... .+. +.|+-+ ..-+.++++++++++
T Consensus 337 -iL~h~~v~~fvtH~G----~nS~~Ea~~~GvP~l~~P~----~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~l 407 (451)
T PLN02410 337 -VLSHPAVGGFWSHCG----WNSTLESIGEGVPMICKPF----SSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRL 407 (451)
T ss_pred -HhCCCccCeeeecCc----hhHHHHHHHcCCCEEeccc----cccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHH
Confidence 5666555 664432 2578999999999999664 2333111000 011 245544 334668999999999
Q ss_pred hcCHH
Q 011163 454 KNNPL 458 (492)
Q Consensus 454 ~~~~~ 458 (492)
+.+++
T Consensus 408 m~~~~ 412 (451)
T PLN02410 408 MVEEE 412 (451)
T ss_pred HcCCc
Confidence 97753
No 174
>PLN00414 glycosyltransferase family protein
Probab=89.40 E-value=7.1 Score=39.97 Aligned_cols=148 Identities=8% Similarity=0.062 Sum_probs=79.1
Q ss_pred CceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC----C--hhHHHHHHHHHHHhCCCeEEEEeccCHHHHHH
Q 011163 306 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK----L--PSASRALVSFQEELKDGIVIFVDSYDDALLHL 379 (492)
Q Consensus 306 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~----~--~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 379 (492)
+..++++.|....-. .+.+.+.+..|...+..|+++-..+ + ..+.+.+.+..+. ....+.+..++. +
T Consensus 252 ~sVvyvsfGS~~~~~-~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~---~g~vv~~w~PQ~---~ 324 (446)
T PLN00414 252 GSVVFCAFGTQFFFE-KDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKG---RGIVWEGWVEQP---L 324 (446)
T ss_pred CceEEEeecccccCC-HHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcC---CCeEEeccCCHH---H
Confidence 456777888865432 3456666666655556654433110 1 0122233333322 122223455554 4
Q ss_pred HHhcC--CEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc--cceeeeeecC-----CCHHHHHHHH
Q 011163 380 IFSGS--DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES--TRFSRFISST-----FGNISLSQAL 450 (492)
Q Consensus 380 ~~~~a--di~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~--~g~~G~~~~~-----~~~~~l~~ai 450 (492)
+++.+ ++||.-. --.+.+||+.+|+|+|+... ..|........ ..+.|..+.. -+.+++++++
T Consensus 325 vL~h~~v~~fvtH~----G~nS~~Ea~~~GvP~l~~P~----~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v 396 (446)
T PLN00414 325 ILSHPSVGCFVNHC----GFGSMWESLVSDCQIVFIPQ----LADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTV 396 (446)
T ss_pred HhcCCccceEEecC----chhHHHHHHHcCCCEEecCc----ccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHH
Confidence 57666 5566443 23679999999999999654 33431110000 1234555532 3678999999
Q ss_pred HHHhcCH-HHHHHHHHHHH
Q 011163 451 EEIKNNP-LSWKRKIKDAM 468 (492)
Q Consensus 451 ~~~~~~~-~~~~~~~~~a~ 468 (492)
++++.++ +..+++.+++.
T Consensus 397 ~~~m~~~~e~g~~~r~~a~ 415 (446)
T PLN00414 397 KSVMDKDSEIGNLVKRNHK 415 (446)
T ss_pred HHHhcCChhhHHHHHHHHH
Confidence 9999764 33444444443
No 175
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.30 E-value=4.5 Score=37.88 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=81.6
Q ss_pred EEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEE
Q 011163 309 VVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIIL 388 (492)
Q Consensus 309 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v 388 (492)
+++..|.- ..|+ +.++.+..+.+.++.+-||=+..++.+ ..+++.++.+ .++.++ .+.+..+.+|..||+.+
T Consensus 161 ilI~lGGs-Dpk~--lt~kvl~~L~~~~~nl~iV~gs~~p~l-~~l~k~~~~~--~~i~~~--~~~~dma~LMke~d~aI 232 (318)
T COG3980 161 ILITLGGS-DPKN--LTLKVLAELEQKNVNLHIVVGSSNPTL-KNLRKRAEKY--PNINLY--IDTNDMAELMKEADLAI 232 (318)
T ss_pred EEEEccCC-Chhh--hHHHHHHHhhccCeeEEEEecCCCcch-hHHHHHHhhC--CCeeeE--ecchhHHHHHHhcchhe
Confidence 55666654 4455 788888888876666654431233444 4466666666 466654 45566789999999988
Q ss_pred ECCCCCCCchHHHHHhhcCCceEEEec---CCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011163 389 CHSFHDPLLQVPLKALKYGAAPIAVTS---SDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIK 465 (492)
Q Consensus 389 ~pS~~E~~glv~lEAma~G~PvV~~~~---~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~ 465 (492)
.. -|.++-||...|+|..+-.. + -......+. ....-..|+. -...+...-+.++.+|+..++.+..
T Consensus 233 ~A-----aGstlyEa~~lgvP~l~l~~a~NQ-~~~a~~f~~-lg~~~~l~~~---l~~~~~~~~~~~i~~d~~~rk~l~~ 302 (318)
T COG3980 233 SA-----AGSTLYEALLLGVPSLVLPLAENQ-IATAKEFEA-LGIIKQLGYH---LKDLAKDYEILQIQKDYARRKNLSF 302 (318)
T ss_pred ec-----cchHHHHHHHhcCCceEEeeeccH-HHHHHHHHh-cCchhhccCC---CchHHHHHHHHHhhhCHHHhhhhhh
Confidence 64 36889999999999443222 0 000111110 0001112332 2334666677777788887766544
No 176
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=89.05 E-value=16 Score=37.23 Aligned_cols=134 Identities=12% Similarity=0.176 Sum_probs=76.1
Q ss_pred HHHHHHHHHhHcCcEEEEEecC--C---ChhHHHHHHHHHHHhCC-CeEEE-EeccCHHHHHHHHhcCCEEEECCCCCCC
Q 011163 324 NLKAVVRGAKMRGIQFVFTGTN--K---LPSASRALVSFQEELKD-GIVIF-VDSYDDALLHLIFSGSDIILCHSFHDPL 396 (492)
Q Consensus 324 ~li~a~~~l~~~~~~lvivG~g--~---~~~~~~~l~~~~~~~~~-~~v~~-~~~~~~~~~~~~~~~adi~v~pS~~E~~ 396 (492)
.+.+++..+.+++.+++++--- . .++.....+++.+..+. .+++. ...++..++..+++.||++|-.-.+
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH--- 337 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH--- 337 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch---
Confidence 4556666666667776665421 0 01112223444444421 34443 3345566667899999998865442
Q ss_pred chHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeec--CCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011163 397 LQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS--TFGNISLSQALEEIKNNPLSWKRKIKDA 467 (492)
Q Consensus 397 glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~--~~~~~~l~~ai~~~~~~~~~~~~~~~~a 467 (492)
+.+=|++.|+|+|+-... .-+..+... -|...++++ .-+.++|.+.+..++++.+.+++.-+.+
T Consensus 338 --a~I~a~~~gvP~i~i~Y~-~K~~~~~~~----lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~ 403 (426)
T PRK10017 338 --SAIISMNFGTPAIAINYE-HKSAGIMQQ----LGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLAEA 403 (426)
T ss_pred --HHHHHHHcCCCEEEeeeh-HHHHHHHHH----cCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 467799999999986640 111222211 122224343 3356789999999999887765543333
No 177
>PLN00164 glucosyltransferase; Provisional
Probab=88.86 E-value=6.3 Score=40.80 Aligned_cols=93 Identities=8% Similarity=-0.062 Sum_probs=52.2
Q ss_pred EEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cc-cceeeeeecC---
Q 011163 366 VIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ES-TRFSRFISST--- 440 (492)
Q Consensus 366 v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~-~g~~G~~~~~--- 440 (492)
+...+..++. ++++.+++..+=+. +--.+.+||+++|+|+|+... ..|...... .. .-+.|+.+..
T Consensus 341 ~~v~~w~PQ~---~iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gvG~~~~~~~~ 411 (480)
T PLN00164 341 LVWPTWAPQK---EILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPL----YAEQHLNAFELVADMGVAVAMKVDRK 411 (480)
T ss_pred eEEeecCCHH---HHhcCcccCeEEee--cccchHHHHHHcCCCEEeCCc----cccchhHHHHHHHHhCeEEEeccccc
Confidence 4434555554 45777775333333 222578999999999999654 334321110 00 1124555431
Q ss_pred ----CCHHHHHHHHHHHhcCHH-HHHHHHHHH
Q 011163 441 ----FGNISLSQALEEIKNNPL-SWKRKIKDA 467 (492)
Q Consensus 441 ----~~~~~l~~ai~~~~~~~~-~~~~~~~~a 467 (492)
-+.++++++|++++.+++ ..+++.+++
T Consensus 412 ~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a 443 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMGGGEEEGRKAREKA 443 (480)
T ss_pred cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 256899999999997643 233444443
No 178
>PLN02555 limonoid glucosyltransferase
Probab=88.69 E-value=10 Score=39.15 Aligned_cols=148 Identities=11% Similarity=0.071 Sum_probs=74.7
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC--ChhHH-HHH-HHHHHHhCCCeEEEEeccCHHHHHHHH-
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK--LPSAS-RAL-VSFQEELKDGIVIFVDSYDDALLHLIF- 381 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~--~~~~~-~~l-~~~~~~~~~~~v~~~~~~~~~~~~~~~- 381 (492)
..+++..|.+. .-....+.+.+..+...+.+|+++=... ..... ..+ ....++. .+|+.+.+..++. +++
T Consensus 278 sVvyvsfGS~~-~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~---~iL~ 352 (480)
T PLN02555 278 SVVYISFGTVV-YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQE---KVLA 352 (480)
T ss_pred ceeEEEecccc-CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHH---HHhC
Confidence 35666777654 2223344444444444456877662110 00000 000 0112222 2566656666654 345
Q ss_pred -hcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cccc-eeeeeec-------CCCHHHHHHHHH
Q 011163 382 -SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTR-FSRFISS-------TFGNISLSQALE 451 (492)
Q Consensus 382 -~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~~g-~~G~~~~-------~~~~~~l~~ai~ 451 (492)
.++.+||.-.- -.+.+||+.+|+|+|+... ..|...... ..+. +.|+-+. .-+.++++++++
T Consensus 353 H~~v~~FvtH~G----~nS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~ 424 (480)
T PLN02555 353 HPSVACFVTHCG----WNSTMEALSSGVPVVCFPQ----WGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLL 424 (480)
T ss_pred CCccCeEEecCC----cchHHHHHHcCCCEEeCCC----ccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHH
Confidence 55666664432 3579999999999999765 233211000 0011 2344441 124678999999
Q ss_pred HHhcCHHHHHHHHHHHH
Q 011163 452 EIKNNPLSWKRKIKDAM 468 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~a~ 468 (492)
+++.+++ -+++.++|+
T Consensus 425 ~vm~~~~-g~~~r~ra~ 440 (480)
T PLN02555 425 EATVGEK-AAELKQNAL 440 (480)
T ss_pred HHhcCch-HHHHHHHHH
Confidence 9987643 344544443
No 179
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=24 Score=34.84 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=103.0
Q ss_pred EEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC----ChhHHHHHHHHHHHhCCCeEEEEecc-----CHHHHHHHHh
Q 011163 312 CIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK----LPSASRALVSFQEELKDGIVIFVDSY-----DDALLHLIFS 382 (492)
Q Consensus 312 ~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~----~~~~~~~l~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~ 382 (492)
|.|.-++-+-...+.+...+.+++++.++|+-..+ +.++.+++++..+...+++|.|+..- -.++..++-.
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 34566677777789999999998899999997543 24666778887777767888876433 2345555555
Q ss_pred cCCE--EEECCC----CCCCchHHHHHhhcCCceEEEecCCCccccccc-ccccccceeeeeecCCCHHHHHHHHHHHhc
Q 011163 383 GSDI--ILCHSF----HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE-FDHESTRFSRFISSTFGNISLSQALEEIKN 455 (492)
Q Consensus 383 ~adi--~v~pS~----~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~-~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~ 455 (492)
..|+ .+++-. .-|-.++..+| .++|++---+ |--.|-.+ .+. ....+-+..-+|.+.|.+++..+..
T Consensus 239 ~vdvg~vIlTKlDGhakGGgAlSaVaa--TksPIiFIGt--GEhmdDlE~F~p--k~FvsrlLGmGDi~glvek~~ev~~ 312 (483)
T KOG0780|consen 239 TVDVGAVILTKLDGHAKGGGALSAVAA--TKSPIIFIGT--GEHMDDLEPFDP--KPFVSRLLGMGDIEGLVEKVQEVGK 312 (483)
T ss_pred hhccceEEEEecccCCCCCceeeehhh--hCCCEEEEec--CccccccCCCCh--HHHHHHHhccccHHHHHHHHHHHhh
Confidence 6666 455532 23445666665 6888888555 43222221 000 1112234556788899999998862
Q ss_pred CHHHHHHHHHHHHhccCCchhhHHHHHHHHH
Q 011163 456 NPLSWKRKIKDAMLQDFSWDADCNDIHISAY 486 (492)
Q Consensus 456 ~~~~~~~~~~~a~~~~fsw~~~a~~~~~~~Y 486 (492)
+.-+++.++-..-+|+...+-+|+ ..+-
T Consensus 313 --~d~~el~~kl~~gkFtlrd~y~Qf-q~im 340 (483)
T KOG0780|consen 313 --DDAKELVEKLKQGKFTLRDFYDQF-QNIM 340 (483)
T ss_pred --hhHHHHHHHHHhCCccHHHHHHHH-HHHH
Confidence 222334444444679998888774 6543
No 180
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.74 E-value=0.95 Score=36.81 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=25.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+|+.....-. -=-.-.+..|+.+.+++||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i---~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESI---KPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG-----TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHC---CCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 8999999743211 111235678999999999999999875
No 181
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=87.41 E-value=12 Score=38.47 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred HHHHhCCCCCCCceEEEEEeccc--cccCHHHHHHHHHHHhHcCcEEEEEecCCC-------hhHHHH---HHHHHHHhC
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGTNKL-------PSASRA---LVSFQEELK 362 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~--~~Kg~~~li~a~~~l~~~~~~lvivG~g~~-------~~~~~~---l~~~~~~~~ 362 (492)
+.+-+.-.++ +..++++.|.+. +.+-...+..+++.. +.+|+++=..+. ....+. .....++.
T Consensus 251 ~~~wLd~~~~-~sVvyvsfGS~~~l~~~q~~ela~gL~~s---~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~- 325 (455)
T PLN02152 251 YTLWLDSKTE-SSVIYVSFGTMVELSKKQIEELARALIEG---KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL- 325 (455)
T ss_pred HHHHhhCCCC-CceEEEEecccccCCHHHHHHHHHHHHHc---CCCeEEEEecCcccccccccccccccccchhHHHhc-
Confidence 4444443332 345667778654 333344555555544 336665431210 000000 12222333
Q ss_pred CCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc-cc-eeeeeec-
Q 011163 363 DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES-TR-FSRFISS- 439 (492)
Q Consensus 363 ~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~-~g-~~G~~~~- 439 (492)
.+|..+.+..++. ++++..++-++-+. +-..+.+||+.+|+|+|+-.. ..|........ +. +.|+-+.
T Consensus 326 ~~~g~v~~W~PQ~---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~----~~DQ~~na~~~~~~~~~G~~~~~ 396 (455)
T PLN02152 326 EEVGMIVSWCSQI---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPM----WSDQPANAKLLEEIWKTGVRVRE 396 (455)
T ss_pred cCCeEEEeeCCHH---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccc----cccchHHHHHHHHHhCceEEeec
Confidence 2555555566643 46787776444454 334578999999999999765 33432110000 00 1233331
Q ss_pred ----CCCHHHHHHHHHHHhcCHH
Q 011163 440 ----TFGNISLSQALEEIKNNPL 458 (492)
Q Consensus 440 ----~~~~~~l~~ai~~~~~~~~ 458 (492)
..+.++++++++++++|+.
T Consensus 397 ~~~~~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 397 NSEGLVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred CcCCcCcHHHHHHHHHHHHhhhH
Confidence 1256899999999997553
No 182
>PLN02167 UDP-glycosyltransferase family protein
Probab=87.24 E-value=8.6 Score=39.80 Aligned_cols=83 Identities=8% Similarity=-0.028 Sum_probs=48.3
Q ss_pred CeEEEEeccCHHHHHHHHhc--CCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc--cccceeeeeec
Q 011163 364 GIVIFVDSYDDALLHLIFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH--ESTRFSRFISS 439 (492)
Q Consensus 364 ~~v~~~~~~~~~~~~~~~~~--adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~--~~~g~~G~~~~ 439 (492)
++..+.+..++. ++++. +++||.-.-+ .+.+||+++|+|+|+... ..|...... ...-+.|..+.
T Consensus 340 ~rg~v~~w~PQ~---~iL~h~~vg~fvtH~G~----nS~~Eal~~GvP~l~~P~----~~DQ~~na~~~~~~~g~g~~~~ 408 (475)
T PLN02167 340 GRGLVCGWAPQV---EILAHKAIGGFVSHCGW----NSVLESLWFGVPIATWPM----YAEQQLNAFTMVKELGLAVELR 408 (475)
T ss_pred cCeeeeccCCHH---HHhcCcccCeEEeeCCc----ccHHHHHHcCCCEEeccc----cccchhhHHHHHHHhCeeEEee
Confidence 344445555554 35665 4456644322 478999999999999765 234321110 00112355543
Q ss_pred C---------CCHHHHHHHHHHHhcCH
Q 011163 440 T---------FGNISLSQALEEIKNNP 457 (492)
Q Consensus 440 ~---------~~~~~l~~ai~~~~~~~ 457 (492)
. -+.+++++++++++.++
T Consensus 409 ~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 409 LDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred cccccccCCcccHHHHHHHHHHHhcCC
Confidence 1 25679999999998654
No 183
>PLN02534 UDP-glycosyltransferase
Probab=86.98 E-value=13 Score=38.48 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCC--hhHHHHH--HHHHHHhCCCeEEEEeccCHHHHHHHHh
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL--PSASRAL--VSFQEELKDGIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~--~~~~~~l--~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 382 (492)
..+++..|... .-....+.+.+.-|...+.+|+++=..+. .+..+.+ +.+.+.....++.+.+..++. .+++
T Consensus 284 sVvyvsfGS~~-~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~---~iL~ 359 (491)
T PLN02534 284 SVIYACLGSLC-RLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQV---LILS 359 (491)
T ss_pred ceEEEEecccc-cCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHH---HHhc
Confidence 45666777654 22233455544444433446666542110 1111101 111212112455545566653 4677
Q ss_pred cCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 383 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 383 ~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
..++..+-+. +-..+++||+.+|+|+|+...
T Consensus 360 h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 HPAIGGFLTH--CGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CCccceEEec--CccHHHHHHHHcCCCEEeccc
Confidence 7777333343 334689999999999999764
No 184
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=86.21 E-value=13 Score=38.45 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=68.1
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCCh------hHHHHHHHHHHHhCCCeEEEEeccCHHHHHHH
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLP------SASRALVSFQEELKDGIVIFVDSYDDALLHLI 380 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~------~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 380 (492)
..+++..|.....- .+.+-+.+.-+.+.+.+++++-..+.. .+.+.+.+... ..++...+..++. ++
T Consensus 284 svVyvsfGS~~~~~-~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~---~~g~~v~~w~PQ~---~v 356 (477)
T PLN02863 284 KVVYVCFGSQVVLT-KEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA---GRGLVIRGWAPQV---AI 356 (477)
T ss_pred ceEEEEeeceecCC-HHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc---cCCEEecCCCCHH---HH
Confidence 45667777764221 133444444444446677766522110 01112222111 2355555566653 45
Q ss_pred Hhc--CCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc-c-cceeeeeec-----CCCHHHHHHHHH
Q 011163 381 FSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-S-TRFSRFISS-----TFGNISLSQALE 451 (492)
Q Consensus 381 ~~~--adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~-~-~g~~G~~~~-----~~~~~~l~~ai~ 451 (492)
++. +++||.-.- -.+.+||+++|+|+|+... ..|....... . .-+.|.-+. .-+.+++++++.
T Consensus 357 L~h~~v~~fvtH~G----~nS~~Eal~~GvP~l~~P~----~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~ 428 (477)
T PLN02863 357 LSHRAVGAFLTHCG----WNSVLEGLVAGVPMLAWPM----AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFM 428 (477)
T ss_pred hcCCCcCeEEecCC----chHHHHHHHcCCCEEeCCc----cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHH
Confidence 665 566664432 3578999999999999665 2333111000 0 112455442 125678889998
Q ss_pred HHh
Q 011163 452 EIK 454 (492)
Q Consensus 452 ~~~ 454 (492)
+++
T Consensus 429 ~~m 431 (477)
T PLN02863 429 ESV 431 (477)
T ss_pred HHh
Confidence 877
No 185
>PLN02207 UDP-glycosyltransferase
Probab=83.31 E-value=20 Score=36.98 Aligned_cols=134 Identities=10% Similarity=0.089 Sum_probs=67.0
Q ss_pred ceEEEEEeccc--cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHH-HHHHHHhCCCeEEEEeccCHHHHHHHHhc
Q 011163 307 TIVVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRAL-VSFQEELKDGIVIFVDSYDDALLHLIFSG 383 (492)
Q Consensus 307 ~~~i~~~grl~--~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 383 (492)
..++++.|... ..+-...++.+++.+ +.+|+++=..+.....+.+ ....++. .+|....+..++.+ +++.
T Consensus 276 sVVyvSfGS~~~~~~~q~~ela~~l~~~---~~~flW~~r~~~~~~~~~lp~~f~er~-~~~g~i~~W~PQ~~---IL~H 348 (468)
T PLN02207 276 SVVFLCFGSMGRLRGPLVKEIAHGLELC---QYRFLWSLRTEEVTNDDLLPEGFLDRV-SGRGMICGWSPQVE---ILAH 348 (468)
T ss_pred cEEEEEeccCcCCCHHHHHHHHHHHHHC---CCcEEEEEeCCCccccccCCHHHHhhc-CCCeEEEEeCCHHH---Hhcc
Confidence 45667777654 222244444444443 4566665422110000000 1111222 24555555666543 4566
Q ss_pred CCE--EEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-cc-cceeeeee---------cCCCHHHHHHHH
Q 011163 384 SDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ES-TRFSRFIS---------STFGNISLSQAL 450 (492)
Q Consensus 384 adi--~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~~-~g~~G~~~---------~~~~~~~l~~ai 450 (492)
..+ ||.-.- -.+.+||+.+|+|+|+... ..|...... .. .-+.|+-+ +.-+.++++++|
T Consensus 349 ~~vg~FvTH~G----wnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av 420 (468)
T PLN02207 349 KAVGGFVSHCG----WNSIVESLWFGVPIVTWPM----YAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAI 420 (468)
T ss_pred cccceeeecCc----cccHHHHHHcCCCEEecCc----cccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHH
Confidence 555 553332 2568999999999999765 334321100 00 01234322 112567999999
Q ss_pred HHHhc
Q 011163 451 EEIKN 455 (492)
Q Consensus 451 ~~~~~ 455 (492)
++++.
T Consensus 421 ~~vm~ 425 (468)
T PLN02207 421 RCVMN 425 (468)
T ss_pred HHHHh
Confidence 99996
No 186
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=83.03 E-value=17 Score=37.56 Aligned_cols=85 Identities=9% Similarity=-0.086 Sum_probs=51.1
Q ss_pred CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccc--cceeeeeecC-
Q 011163 364 GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHES--TRFSRFISST- 440 (492)
Q Consensus 364 ~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~--~g~~G~~~~~- 440 (492)
.++.+.+..++. ++++...+..+=+. +--.+.+||+.+|+|+|+... ..|........ .-+.|..++.
T Consensus 338 rg~vv~~W~PQ~---~iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~----~~DQ~~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 RGFVVPSWAPQA---EILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPL----FAEQNMNAALLSDELGIAVRSDDP 408 (481)
T ss_pred CCEEEeecCCHH---HHhCCcccCeeEec--CchhHHHHHHHcCCCEEecCc----cchhHHHHHHHHHHhCeeEEecCC
Confidence 356655666654 45777776333343 334689999999999999765 23331100000 1123555533
Q ss_pred ---CCHHHHHHHHHHHhcCH
Q 011163 441 ---FGNISLSQALEEIKNNP 457 (492)
Q Consensus 441 ---~~~~~l~~ai~~~~~~~ 457 (492)
-+.+++++++++++.++
T Consensus 409 ~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred CCcccHHHHHHHHHHHhcCC
Confidence 36679999999998764
No 187
>PLN02554 UDP-glycosyltransferase family protein
Probab=82.73 E-value=20 Score=37.25 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=49.5
Q ss_pred CeEEEEeccCHHHHHHHH--hcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccc-c-cccceeeeeec
Q 011163 364 GIVIFVDSYDDALLHLIF--SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-H-ESTRFSRFISS 439 (492)
Q Consensus 364 ~~v~~~~~~~~~~~~~~~--~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~-~-~~~g~~G~~~~ 439 (492)
+|+.+.+..++. +++ .++.+||.- +--.+.+||+.+|+|.|+... ..|..... . ...-+.|..++
T Consensus 342 ~~g~v~~W~PQ~---~iL~H~~v~~FvtH----~G~nS~~Ea~~~GVP~l~~P~----~~DQ~~Na~~~v~~~g~Gv~l~ 410 (481)
T PLN02554 342 DIGKVIGWAPQV---AVLAKPAIGGFVTH----CGWNSILESLWFGVPMAAWPL----YAEQKFNAFEMVEELGLAVEIR 410 (481)
T ss_pred cCceEEeeCCHH---HHhCCcccCccccc----CccchHHHHHHcCCCEEecCc----cccchhhHHHHHHHhCceEEee
Confidence 456556666654 456 444556533 223578999999999999764 33432111 0 00112344442
Q ss_pred -------------CCCHHHHHHHHHHHhc-CHHH
Q 011163 440 -------------TFGNISLSQALEEIKN-NPLS 459 (492)
Q Consensus 440 -------------~~~~~~l~~ai~~~~~-~~~~ 459 (492)
.-+.++++++|++++. +++.
T Consensus 411 ~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~ 444 (481)
T PLN02554 411 KYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDV 444 (481)
T ss_pred ccccccccccccCeEcHHHHHHHHHHHhcCCHHH
Confidence 1256789999999996 5543
No 188
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.90 E-value=2.9 Score=36.59 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
|||++|+. +|=+| ..+.++..+|||+|+-|+.+..
T Consensus 1 mKIaiIgA-------sG~~G---s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGA-------SGKAG---SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEec-------CchhH---HHHHHHHHhCCCeeEEEEeChH
Confidence 89999986 35555 4567888999999999997644
No 189
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=79.82 E-value=3.1 Score=34.62 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHCCCeEEEEeec
Q 011163 29 SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 29 ~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.=...|+++|.++||||.+.++.
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETG
T ss_pred HHHHHHHHHHhccCCeEEEeecc
Confidence 33458999999999999988864
No 190
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=79.43 E-value=2.9 Score=39.06 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
.++||||+.+++... ..-+..|+++|.+.| +|.|++|....
T Consensus 3 ~~~M~ILltNDDGi~-------a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 3 DKKPHILVCNDDGIE-------GEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCCEEEEECCCCCC-------CHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 356999998887443 123667788888888 89999997553
No 191
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=78.53 E-value=32 Score=32.91 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchH
Q 011163 322 LENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQV 399 (492)
Q Consensus 322 ~~~li~a~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv 399 (492)
...+.+++..+.++ +.+++++.-....+ .+..+++.+.++. .++ +...+.++...++++||++|-...+ .
T Consensus 190 ~~~l~~~l~~l~~~~g~~v~~i~~~~~~D-~~~~~~l~~~~~~~~~i--~~~~~~~e~~~~i~~~~~vI~~RlH-----~ 261 (298)
T TIGR03609 190 LLRLLRALDRLQRDTGAFVLFLPFQQPQD-LPLARALRDQLLGPAEV--LSPLDPEELLGLFASARLVIGMRLH-----A 261 (298)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCcchh-HHHHHHHHHhcCCCcEE--EecCCHHHHHHHHhhCCEEEEechH-----H
Confidence 55677777777654 77776665321111 2334455555432 333 3455677777899999988876653 4
Q ss_pred HHHHhhcCCceEEEec
Q 011163 400 PLKALKYGAAPIAVTS 415 (492)
Q Consensus 400 ~lEAma~G~PvV~~~~ 415 (492)
.+=|+++|+|+|+-..
T Consensus 262 ~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 262 LILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHHcCCCEEEeec
Confidence 6779999999998643
No 192
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=77.95 E-value=3.6 Score=33.78 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccc
Q 011163 376 LLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH 422 (492)
Q Consensus 376 ~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e 422 (492)
.+..++..+|+++--|.-+..--.+-.++.+|+|+|...+ |.-.+
T Consensus 60 ~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTT--G~~~~ 104 (124)
T PF01113_consen 60 DLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTT--GFSDE 104 (124)
T ss_dssp -HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-S--SSHHH
T ss_pred hHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECC--CCCHH
Confidence 4567778899999888655544445667888999999887 55443
No 193
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=77.04 E-value=3.6 Score=42.91 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
-||+.+.+.. .+.=-.++..++++|+++||+|+|++|.
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4677765521 2456678889999999999999999885
No 194
>PLN03015 UDP-glucosyl transferase
Probab=76.33 E-value=51 Score=34.02 Aligned_cols=80 Identities=14% Similarity=-0.015 Sum_probs=43.9
Q ss_pred EEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc-c-ccceeeeeec-----
Q 011163 367 IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-E-STRFSRFISS----- 439 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~-~-~~g~~G~~~~----- 439 (492)
.+.+..++.+ +++...+..+-+. +--.+.+||+.+|+|+|+... ..|...... . ...+.|.-+.
T Consensus 338 ~v~~W~PQ~~---vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~----~~DQ~~na~~~~~~~gvg~~~~~~~~~ 408 (470)
T PLN03015 338 VVTQWAPQVE---ILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPL----YAEQWMNATLLTEEIGVAVRTSELPSE 408 (470)
T ss_pred EEEecCCHHH---HhccCccCeEEec--CCchhHHHHHHcCCCEEeccc----ccchHHHHHHHHHHhCeeEEecccccC
Confidence 3344555543 4555554333233 223578999999999999765 233311000 0 0112344442
Q ss_pred -CCCHHHHHHHHHHHhc
Q 011163 440 -TFGNISLSQALEEIKN 455 (492)
Q Consensus 440 -~~~~~~l~~ai~~~~~ 455 (492)
.-..+++++++++++.
T Consensus 409 ~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 409 KVIGREEVASLVRKIVA 425 (470)
T ss_pred CccCHHHHHHHHHHHHc
Confidence 1245789999999985
No 195
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.92 E-value=50 Score=31.20 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhHcCcEEEEEec-----------CCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEE
Q 011163 321 FLENLKAVVRGAKMRGIQFVFTGT-----------NKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILC 389 (492)
Q Consensus 321 g~~~li~a~~~l~~~~~~lvivG~-----------g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~ 389 (492)
..+.+++.++++++.+.+++..|. |...+.-..+++..++++ --.+...++...+..+...+|++-.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~G--l~~~te~~d~~~~~~l~~~vd~~kI 116 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYN--LPVVTEVMDTRDVEEVADYADMLQI 116 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcC--CCEEEeeCChhhHHHHHHhCCEEEE
Confidence 456788999888877788887771 111122345666666653 2233445676666666666999999
Q ss_pred CCC-CCCCchHHHHHhhcCCceEEEe
Q 011163 390 HSF-HDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 390 pS~-~E~~glv~lEAma~G~PvV~~~ 414 (492)
+|. .+.+.+ +-++...|+||+.++
T Consensus 117 ga~~~~n~~L-L~~~a~~gkPV~lk~ 141 (266)
T PRK13398 117 GSRNMQNFEL-LKEVGKTKKPILLKR 141 (266)
T ss_pred CcccccCHHH-HHHHhcCCCcEEEeC
Confidence 998 577654 344567899999886
No 196
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=75.20 E-value=5.5 Score=33.83 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=32.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||+|++-. +..|-+.....-++..|.++|++|.+.-..
T Consensus 1 Mk~LIlYs-----tr~GqT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 1 MKTLILYS-----TRDGQTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred CceEEEEe-----cCCCcHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 88888776 367999999999999999999999987543
No 197
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.84 E-value=37 Score=29.60 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=56.1
Q ss_pred cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEE-E-eccCHHHHHHHH-----hcCCEEEEC
Q 011163 318 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIF-V-DSYDDALLHLIF-----SGSDIILCH 390 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~-~-~~~~~~~~~~~~-----~~adi~v~p 390 (492)
.--|.+++.+.++...+.+.++.++|+. +....+..+.+.+.++.-+|.. . +.+++++...+. +.+|++++.
T Consensus 30 rv~g~dl~~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 30 RVTGSDLFPDLLRRAEQRGKRIFLLGGS-EEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3456778888887777677899999943 3334444455556665333331 1 223433333333 567887765
Q ss_pred CC---CCCCchHHHHHhhcCCceEEEecCCCccccccc
Q 011163 391 SF---HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 425 (492)
Q Consensus 391 S~---~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~ 425 (492)
-- -|-|..-....+- . .|.-.+ ||.-++..
T Consensus 109 lG~PkQE~~~~~~~~~l~--~-~v~i~v--G~~~d~~a 141 (172)
T PF03808_consen 109 LGAPKQERWIARHRQRLP--A-GVIIGV--GGAFDFLA 141 (172)
T ss_pred CCCCHHHHHHHHHHHHCC--C-CEEEEE--Cchhhhhc
Confidence 32 3544433333332 2 255556 88888753
No 198
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.78 E-value=33 Score=36.01 Aligned_cols=184 Identities=9% Similarity=-0.021 Sum_probs=101.0
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhC--CCeEEEEe
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELK--DGIVIFVD 370 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~--~~~v~~~~ 370 (492)
.|...|++.| ..+|.....+.+- -...++.+.++.+ .+..|++.- -|- --++.++..++..+ +++|.|..
T Consensus 749 ~r~~y~Lp~d--~vvf~~FNqLyKi--dP~~l~~W~~ILk~VPnS~Lwllr-fPa-~ge~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 749 TRSQYGLPED--AVVFCNFNQLYKI--DPSTLQMWANILKRVPNSVLWLLR-FPA-VGEQRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCC--eEEEeechhhhcC--CHHHHHHHHHHHHhCCcceeEEEe-ccc-cchHHHHHHHHHhCCCccceeecc
Confidence 3455677754 3445544444433 3356677766654 256666654 111 11356777777765 38999875
Q ss_pred ccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHH
Q 011163 371 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQAL 450 (492)
Q Consensus 371 ~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai 450 (492)
-.-.++-..-.+-||+.+=+...-|- .+.+|.+..|+|+|.-.- .-++.-|.-+....-+.|-++ ..+.++..+.-
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpg--e~lAsrVa~Sll~~~Gl~hli-ak~~eEY~~ia 898 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPG--ETLASRVAASLLTALGLGHLI-AKNREEYVQIA 898 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeeccc--HHHHHHHHHHHHHHcccHHHH-hhhHHHHHHHH
Confidence 44444434556889999877665432 345789999998886432 111111111000001123333 23445666655
Q ss_pred HHHhcCHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHH
Q 011163 451 EEIKNNPLSWKRKIKDAML-----QDFSWDADCNDIHISAYTAI 489 (492)
Q Consensus 451 ~~~~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~~~~~Y~~l 489 (492)
-++-.|.+.++.+...-+. --|+-..-+..+ +.+|.+.
T Consensus 899 V~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~L-E~~y~~M 941 (966)
T KOG4626|consen 899 VRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGL-ERLYLQM 941 (966)
T ss_pred HHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHH-HHHHHHH
Confidence 5566677777666544332 357777777775 7777654
No 199
>PRK10037 cell division protein; Provisional
Probab=73.96 E-value=4.6 Score=37.75 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.7
Q ss_pred ceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~ 49 (492)
|||+-|+. ..||+|+.+ .+|+.+|+++|++|.+|=
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 67666665 249998765 789999999999999884
No 200
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=72.73 E-value=5.3 Score=37.14 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++. =....+..|+++|.+.| +|.|++|....
T Consensus 1 M~ILltNDDG-------i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDDG-------IHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCCC-------CCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 8999988863 23334778888899998 99999997553
No 201
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.49 E-value=20 Score=33.86 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEe
Q 011163 377 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 377 ~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~ 414 (492)
...++..||.++.-+- .+.+||+.+|+||++.-
T Consensus 193 ~~~Ll~~s~~VvtinS-----tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 193 LYELLEQSDAVVTINS-----TVGLEALLHGKPVIVFG 225 (269)
T ss_pred HHHHHHhCCEEEEECC-----HHHHHHHHcCCceEEec
Confidence 3477899999887654 68899999999999954
No 202
>PRK09271 flavodoxin; Provisional
Probab=72.45 E-value=7.9 Score=33.35 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=30.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
|||+++.. +.+|.++.+...++++|.+.|++|.+.-
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 78888775 3579999999999999999999987654
No 203
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=71.73 E-value=8.9 Score=31.71 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=30.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCe-EEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHL-VEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~-V~vi~~~ 51 (492)
|||+++... .|+. +-......++++++.+.||+ +.|+-..
T Consensus 1 m~~~iv~~~-~Py~--~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTG-PAYG--TQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcC-CCCC--CHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 899888874 6752 45567788999999999999 4777643
No 204
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.05 E-value=7.6 Score=37.67 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.9
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+.+.|||++|.. |++|.+ ++..|.+.||+|++++..
T Consensus 2 ~~~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 456699998764 777765 456688899999999874
No 205
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=68.79 E-value=7.8 Score=34.83 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=28.9
Q ss_pred CceEEEEeeccccccccCcH--HHHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSL--ASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~--~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||++.|+.. .||+ .+.+.+|+.+|+++|++|.++=.+
T Consensus 16 ~~kvI~v~s~------kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSV------KPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecC------CCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3888787762 3554 457889999999999999888543
No 206
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=68.34 E-value=11 Score=31.84 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=31.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++|+.. |. ..|-....+..+.+.+.+.|+++.++-+.
T Consensus 1 Mkilii~gS--~r-~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGS--PR-KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESS--SS-TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECc--CC-CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 899999874 32 24778888888999999999999999765
No 207
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=68.11 E-value=6.6 Score=37.67 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++.. .||+|+. +.+|+.+|+++|.+|.++=.+
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7877644 2888765 678999999999999888543
No 208
>CHL00175 minD septum-site determining protein; Validated
Probab=68.05 E-value=8.5 Score=36.63 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=30.9
Q ss_pred ccccCCCc-eEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeec
Q 011163 2 EKWLRNGF-HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 2 ~~~~~~~m-kIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+|-+.++| ||+.|+. ..||+|+ .+.+|+.+|+++|.+|.++=.+
T Consensus 7 ~~~~~~~~~~vi~v~s------~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 7 DKEKSATMSRIIVITS------GKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred hhhhcCCCceEEEEEc------CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34455555 6666665 2477775 5678999999999999888443
No 209
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=67.02 E-value=13 Score=33.30 Aligned_cols=36 Identities=28% Similarity=0.165 Sum_probs=28.7
Q ss_pred CceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.+||++-.+ ||++.+- .++.+.|.+.|++|.++...
T Consensus 5 ~k~IllgVT--------Gsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFGLT--------GSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEEEc--------CHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 457766443 8888875 79999999999999999754
No 210
>PRK06756 flavodoxin; Provisional
Probab=66.52 E-value=12 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+++.. +.+|.++.+...+++++.+.|++|.++-.
T Consensus 2 mkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 78888774 25699999999999999999999987754
No 211
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=66.00 E-value=8.4 Score=37.22 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhH--HHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTG--LSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~--l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++++- .||+|+.+.. +|-.++++|++|.+++.+
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~D 38 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTD 38 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESS
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecC
Confidence 78988885 4999988877 666778899999999865
No 212
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.99 E-value=8.8 Score=35.57 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=27.6
Q ss_pred ceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||++.|.. -.||+|+ .+-+|+.+|+++|.+|.+|=.+
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 77666664 2377765 5678999999999999888543
No 213
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=65.92 E-value=6.8 Score=39.59 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=30.4
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
+|||+++... . =|--.-+..|+++|.++||+|+.+|...
T Consensus 1 ~mkil~~~~~-----~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 1 RMKILFVVCG-----A-YGHVNPCLALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred CceEEEEecc-----c-cccccchHHHHHHHHhcCCeEEEEeCHH
Confidence 4999998862 1 2444557789999999999999999753
No 214
>PLN00016 RNA-binding protein; Provisional
Probab=65.27 E-value=6.8 Score=39.13 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=30.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|||++++. ..||.|-.=..|++.|.+.||+|++++...
T Consensus 53 ~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 67887755 347778888889999999999999998653
No 215
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=64.97 E-value=9.3 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=27.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++.... -| +..|+++|.+ +|+|.|++|....
T Consensus 1 M~ILvtNDDGi~a---pG----l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGINA---EG----INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCCCC---hh----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 8999988875431 23 6677777765 5799999997553
No 216
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=64.08 E-value=13 Score=34.86 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=29.6
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
..++-++||- .++|+| .++++.|+++|++|.+++.+..
T Consensus 4 ~~~~~~lITG------ASsGIG---~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 4 MKGKTALITG------ASSGIG---AELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CCCcEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCcHH
Confidence 3456666674 468998 6889999999999999997643
No 217
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=63.94 E-value=10 Score=35.43 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=27.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++..- .-| +..|+++|.+ +|+|.|++|....
T Consensus 1 M~ILlTNDDGi~---a~G----i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGIT---SPG----IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCCC---CHH----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899998887432 123 5667777765 5799999997653
No 218
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=63.61 E-value=10 Score=35.59 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=27.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++... ..-+..|+++|.+.| +|.|++|....
T Consensus 1 M~ILlTNDDGi~-------apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGVH-------SPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCCC-------CHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 899998887442 222667778888887 89999997553
No 219
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=63.39 E-value=9.2 Score=36.06 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=26.3
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|+|++. . .||+|+. +.+|+.+|+++|++|.++=.
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 677664 2 3888865 57899999999999988844
No 220
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=62.37 E-value=11 Score=35.07 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=28.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++... ..-+..|+++|.+. |+|.|++|....
T Consensus 1 M~ILlTNDDGi~-------a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGIH-------APGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCCC-------ChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 899998887432 22367788888888 699999997553
No 221
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=62.26 E-value=58 Score=28.16 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=14.4
Q ss_pred hcCceeccCccchhhhhh
Q 011163 221 YSNKVVIVSSMHSKGRII 238 (492)
Q Consensus 221 ~ad~vi~vS~~~~~~~~~ 238 (492)
.+|..++.|+..++++.+
T Consensus 137 ~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIE 154 (169)
T ss_pred CCCEEEECCHHHHHHHHH
Confidence 368889999998887765
No 222
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=61.68 E-value=13 Score=30.58 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=25.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++.... +++.-. +.++.++|.+.|++|.++...
T Consensus 1 k~i~l~vtG------s~~~~~-~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG------SIAAYK-APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S------SGGGGG-HHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC------HHHHHH-HHHHHHHHhhCCCEEEEEECC
Confidence 688887763 233333 889999999999999988743
No 223
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=61.42 E-value=1.1e+02 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=20.8
Q ss_pred cCcHHHHHhHHHHHH-HH-CCCeEEEEeecC
Q 011163 24 IGSLASYVTGLSGAL-QR-KGHLVEVILPKY 52 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L-~~-~Gh~V~vi~~~~ 52 (492)
+||=-.-+..|.+.+ .+ ..++..+++-..
T Consensus 7 sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 589888888899988 22 356777777543
No 224
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=60.64 E-value=14 Score=34.83 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=30.0
Q ss_pred cccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 3 KWLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 3 ~~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
.++.+++||++ +||.|=.-..|+..|...||+|.++-
T Consensus 22 ~~p~~~lrI~i----------tGgaGFIgSHLvdkLm~egh~VIa~D 58 (350)
T KOG1429|consen 22 VKPSQNLRILI----------TGGAGFIGSHLVDKLMTEGHEVIALD 58 (350)
T ss_pred ccCCCCcEEEE----------ecCcchHHHHHHHHHHhcCCeEEEEe
Confidence 45667789876 37788888899999999999997764
No 225
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=60.55 E-value=12 Score=34.72 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=27.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
||||+.+++..- .-| +..|+++|. .+++|+|++|....
T Consensus 1 mrILlTNDDGi~---a~G----i~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDDGIH---APG----IRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCCccC---CHH----HHHHHHHHh-hCCCEEEEccCCCC
Confidence 899998876432 123 566777777 88999999997553
No 226
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=60.14 E-value=15 Score=35.19 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=33.6
Q ss_pred HHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 376 LLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 376 ~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
...+.|+.+.+++.|.-.-++..-+.|||++||-||....
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecC
Confidence 3567789999999998877788899999999998887643
No 227
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=59.67 E-value=12 Score=38.20 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=28.8
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.++.|||++ +||.|-.=..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILV----------TGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVV----------TGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEE----------ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 356699866 277777788899999999999988764
No 228
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=59.64 E-value=14 Score=32.51 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=30.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+++.. +..|-++.+...+++.|.. |++|.++-.
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 78888775 3679999999999999998 999988754
No 229
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=59.36 E-value=24 Score=36.69 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=81.2
Q ss_pred cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC-CCCC
Q 011163 318 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPL 396 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~-~E~~ 396 (492)
-+||-+..++++.+.. .++--+.+.... ...+- .-|.=+|....++...+++.+.+||=-.. +|+
T Consensus 289 ~w~~k~~~l~~l~~~~--eih~tV~~~~~~---~~~~P--------~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~Eg- 354 (559)
T PF15024_consen 289 MWKGKEKYLDVLHKYM--EIHGTVYDEPQR---PPNVP--------SFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEG- 354 (559)
T ss_pred hhcCcHHHHHHHHhhc--EEEEEeccCCCC---Ccccc--------hhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCC-
Confidence 3556566677665432 455545442110 01111 22333456677788899999999996654 774
Q ss_pred chHHHHHhhcCCceEEEecC--CCc-----------ccccc-ccccc--ccce-eeeeecCCCHHHHHHHHHHHhcCHHH
Q 011163 397 LQVPLKALKYGAAPIAVTSS--DIE-----------FRHFA-EFDHE--STRF-SRFISSTFGNISLSQALEEIKNNPLS 459 (492)
Q Consensus 397 glv~lEAma~G~PvV~~~~~--~gg-----------~~e~v-~~~~~--~~g~-~G~~~~~~~~~~l~~ai~~~~~~~~~ 459 (492)
-+.+||+|.|+|-|-..-. .+. .+++- ++.-+ .-|. --+.|+..|.+++.+||+++++.+-
T Consensus 355 -PaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v- 432 (559)
T PF15024_consen 355 -PAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV- 432 (559)
T ss_pred -CChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC-
Confidence 5689999999988865530 000 01110 11000 0111 2377888999999999999987641
Q ss_pred HHHHHHHHHhccCCchhhHHHH
Q 011163 460 WKRKIKDAMLQDFSWDADCNDI 481 (492)
Q Consensus 460 ~~~~~~~a~~~~fsw~~~a~~~ 481 (492)
+--+-..||-+.|.+++
T Consensus 433 -----~Py~P~efT~egmLeRv 449 (559)
T PF15024_consen 433 -----EPYLPYEFTCEGMLERV 449 (559)
T ss_pred -----CCcCCcccCHHHHHHHH
Confidence 11112556666666664
No 230
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=58.44 E-value=19 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEV 47 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~v 47 (492)
|||+++.. +..|-++.....+++.|...|++|.+
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78887764 35799999999999999999999874
No 231
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=57.83 E-value=74 Score=27.95 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEE-EeccCHHHHH----HH-HhcCCEEEECC---
Q 011163 321 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIF-VDSYDDALLH----LI-FSGSDIILCHS--- 391 (492)
Q Consensus 321 g~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~-~~~~~~~~~~----~~-~~~adi~v~pS--- 391 (492)
|.|++.+.++...+.+.++.++|.. ....++..+.+.+++|.-+|.. .+.+++++.. .+ -+.+|++++.=
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~-~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGK-PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCC-HHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 7888888888777677899999944 2344455555666775434332 2444433222 22 25578776642
Q ss_pred CCCCCchHHHHHhhcCCceEEEecCCCccccccc
Q 011163 392 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 425 (492)
Q Consensus 392 ~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~ 425 (492)
+-|-|..-... .... .|...+ ||.-|+..
T Consensus 112 kQE~~~~~~~~--~~~~-~v~~gv--Gg~fd~~a 140 (177)
T TIGR00696 112 KQEIWMRNHRH--LKPD-AVMIGV--GGSFDVFS 140 (177)
T ss_pred HhHHHHHHhHH--hCCC-cEEEEe--ceeeeecc
Confidence 24544322212 2233 333346 88888753
No 232
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=57.58 E-value=12 Score=36.34 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=29.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|||+|+.+... ...=-.-.+..|..+.+++||+|.++.+..
T Consensus 1 m~~~~~~~~~~---~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIE---SINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHH---HCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999996322 111122257789999999999999999863
No 233
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=57.55 E-value=13 Score=34.96 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=26.6
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+|++.. .||+|+. +.+|+.+|+++|++|.++=.+
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6776652 2777765 578999999999999888543
No 234
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=56.55 E-value=1.4e+02 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=24.0
Q ss_pred hcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 382 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 382 ~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
..=|++++....+. ..++.||...|.|+|+--.
T Consensus 126 ~~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 126 RLPDLVIVLDPRKE-HQAIREASKLGIPVIAIVD 158 (193)
T ss_pred cCCCEEEEeCCccc-hHHHHHHHHcCCCEEEEec
Confidence 44577776654332 5778999999999998654
No 235
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=56.27 E-value=18 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=28.7
Q ss_pred CceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 8 GFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+|+|+.|+. ..||+|+. +.+|+.+|+.+|++|.+|=.
T Consensus 120 ~~~vIav~n------~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTN------FKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CceEEEEEc------CCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 578777775 24888875 57789999999999988843
No 236
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=56.23 E-value=18 Score=36.28 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.++|+|+.|+. ..||+|+.+ .+|+.+|+++|++|.+|=.+
T Consensus 101 g~~~~vI~v~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 101 GEHLQVIAVTN------FKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCCceEEEEEc------cCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 35678777775 248887654 67899999999999888543
No 237
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=55.84 E-value=17 Score=36.27 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.8
Q ss_pred ccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 4 WLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 4 ~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|...+|||++ + ||.|-.=..|++.|.++||+|..+..
T Consensus 17 ~~~~~~~IlV-t---------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICI-T---------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEE-E---------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 4456689875 2 77777888999999999999998874
No 238
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=55.42 E-value=1.1e+02 Score=28.85 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=69.8
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccC--HHHHHHHH-hcC
Q 011163 308 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD--DALLHLIF-SGS 384 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~--~~~~~~~~-~~a 384 (492)
+.+++++.-.+.|.++.|+++++.-. ..+.+-..|.|....+ ....+.+..+ -.+..+ .|+ .+.+.+++ ...
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~p-~~~~~g~~g~g~~~hl--~~~~l~~~~G-~~~~~V-py~G~~~~~~allgG~v 153 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKANP-GKLTFGSSGPGSSDHL--AAALLAKAAG-IKFTHV-PYDGGAEALTALLGGHV 153 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCSC-CC-EEEESSTTSHHHH--HHHHHHHHHT----EEE-E-SSHHHHHHHHHTTSS
T ss_pred ceEEEEeCCCccccHHHHHHHHHhCC-CCeEEEecCCCchHHH--HHHHHHHHhC-CceEEE-EeCCccHHHHHHhCCee
Confidence 55667777789999888888775432 1234433333321111 2223344443 233333 332 23344444 346
Q ss_pred CEEEECCCCCCCchHHHHHhhcCC-ceEEE-e-cCCCccccc--c-cc---cccccceeeeeecCCCHH----HHHHHHH
Q 011163 385 DIILCHSFHDPLLQVPLKALKYGA-APIAV-T-SSDIEFRHF--A-EF---DHESTRFSRFISSTFGNI----SLSQALE 451 (492)
Q Consensus 385 di~v~pS~~E~~glv~lEAma~G~-PvV~~-~-~~~gg~~e~--v-~~---~~~~~g~~G~~~~~~~~~----~l~~ai~ 451 (492)
|+.+... -........|. -+++. . .+...++|+ + +. +.....+.|+.++.+-++ .|.++++
T Consensus 154 d~~~~~~------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~ 227 (274)
T PF03401_consen 154 DAAFGSP------GEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADAIK 227 (274)
T ss_dssp SEEEEEH------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHHHH
T ss_pred eEEeecH------HHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHHHH
Confidence 6655431 01112222232 11211 1 111333332 1 11 111235678888887765 5777888
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 011163 452 EIKNNPLSWKRKIKDAML 469 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~a~~ 469 (492)
+.++||+..+.+.+.+..
T Consensus 228 ~~~~~pe~~~~~~~~g~~ 245 (274)
T PF03401_consen 228 KALEDPEFQEFLEKMGLE 245 (274)
T ss_dssp HHHT-HHHHHHHHHHTEE
T ss_pred HHhCCHHHHHHHHHCCCc
Confidence 888999987777776654
No 239
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.40 E-value=1.5e+02 Score=25.82 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=56.5
Q ss_pred cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEE-E-eccCHHH----HHHH-HhcCCEEEEC
Q 011163 318 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIF-V-DSYDDAL----LHLI-FSGSDIILCH 390 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~-~-~~~~~~~----~~~~-~~~adi~v~p 390 (492)
.--|.|++.+.++...+.+.++.++|+. .....+..+.+.+.++.-++.. . +.+..++ +..+ -+.+|++++.
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~-~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAK-PEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCC-HHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 4457888888888887778899999944 2233333445556665333332 2 2333222 2222 2457887765
Q ss_pred C---CCCCCchHHHHHhhcCCceEEEecCCCcccccc
Q 011163 391 S---FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFA 424 (492)
Q Consensus 391 S---~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v 424 (492)
- ..|-|..-..+.+ ..+++. .+ ||.-|+.
T Consensus 107 lG~PkQE~~~~~~~~~l--~~~v~~-~v--G~~~d~~ 138 (171)
T cd06533 107 LGAPKQELWIARHKDRL--PVPVAI-GV--GGSFDFL 138 (171)
T ss_pred CCCCHHHHHHHHHHHHC--CCCEEE-Ee--ceeeEec
Confidence 2 3566665555554 233333 35 8887765
No 240
>PRK13236 nitrogenase reductase; Reviewed
Probab=53.94 E-value=21 Score=34.37 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=29.5
Q ss_pred cCCCceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEee
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~ 50 (492)
++..||++-+. ..||+|+.. .+|+.+|+++|.+|.++=.
T Consensus 2 ~~~~~~~~~~~-------GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 2 TDENIRQIAFY-------GKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred CCcCceEEEEE-------CCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 34457776653 248888764 7899999999999999854
No 241
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=53.74 E-value=29 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.3
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
.|+|+.|+-. +-.|=.+.+..+.+.|.++|++|.++=...
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 3789888862 457899999999999999999999996543
No 242
>PRK06703 flavodoxin; Provisional
Probab=53.21 E-value=28 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=30.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+++.. +.+|.++.+...++++|.+.|++|.+.-.
T Consensus 2 mkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 2 AKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 67777664 25699999999999999999999988754
No 243
>CHL00194 ycf39 Ycf39; Provisional
Probab=52.83 E-value=18 Score=35.04 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=22.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.=..++++|.++||+|.+++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 666666677889999999999999864
No 244
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=52.77 E-value=19 Score=34.75 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.4
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.|||+++.. |++|.+... .|.+.|++|++++..
T Consensus 2 ~m~I~IiGa--------GaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHHHHH---HHHhCCCCeEEEEec
Confidence 589998775 888877554 477889999999874
No 245
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=52.48 E-value=24 Score=31.45 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCC-CeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~G-h~V~vi~~~ 51 (492)
||||+|.. +|....+-.......+.+++.+.| |+|.++=..
T Consensus 1 mkiLvI~a--sp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~ 42 (199)
T PF02525_consen 1 MKILVINA--SPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLY 42 (199)
T ss_dssp EEEEEEE----SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEEEEEc--CCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 89999997 453221334666788899999999 999887653
No 246
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=52.38 E-value=27 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
|||+++.. +.+|.++.+...++..|.+.|++|.+..
T Consensus 2 ~ki~Ivy~-----S~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 2 MKILIVYG-----SRTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CeEEEEEE-----cCCCcHHHHHHHHHHHhccCCceEEEee
Confidence 78888875 3579999999999999999999995554
No 247
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=52.28 E-value=20 Score=33.65 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||+|+. +.+|+.+|+++|++|.++=.
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 888765 57899999999999988854
No 248
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=52.23 E-value=20 Score=32.70 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||++| ||.|.+-..++..|.+.||+|.++..
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 677664 55666667889999999999988754
No 249
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.01 E-value=26 Score=33.04 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=30.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+++++...- .-+|=-..+..|+++|.++|..+..++-.
T Consensus 1 M~V~i~~Dgg~~--iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLE--IGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcc--cCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 899999985433 22455566778999999999888877754
No 250
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=51.57 E-value=93 Score=32.44 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=24.6
Q ss_pred eEEEEeeccccccccCcHH-------HHHhHHHHHHHHCC-CeEEEEe
Q 011163 10 HIIHICTEMDPLVSIGSLA-------SYVTGLSGALQRKG-HLVEVIL 49 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~-------~~~~~l~~~L~~~G-h~V~vi~ 49 (492)
||++|++.++. ||.. .-+.-|+..|.+.| |+|.++=
T Consensus 1 ~illi~P~~~~----~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD 44 (497)
T TIGR02026 1 RILILNPNYHA----GGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLD 44 (497)
T ss_pred CeEEEcCCCCc----cccccCCCcCCHHHHHHHHHHHhcCCcceEEec
Confidence 69999885432 3332 23556777888999 8998883
No 251
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=50.98 E-value=25 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=28.0
Q ss_pred ceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||..|+. ..||+|+.+ ..|+.+|+++|.+|.++=.+
T Consensus 1 M~iI~v~n------~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCS------FKGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEEC------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 66666654 249998765 67899999999999888654
No 252
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=50.92 E-value=20 Score=33.88 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEe
Q 011163 25 GSLASY--VTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~~Gh~V~vi~ 49 (492)
||+|+. +.+|+.+|+++|.+|.++=
T Consensus 10 GGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 888865 5789999999999999984
No 253
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=50.62 E-value=27 Score=33.59 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=27.1
Q ss_pred CceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 8 GFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+|||.-|.. .||+|+. +.+|+.+|+++|.+|.+|=.
T Consensus 3 ~~~~iai~~-------KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFYG-------KGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred cceEEEEEC-------CCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 577655532 3888875 57899999999999988843
No 254
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=49.55 E-value=24 Score=32.53 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=27.4
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+.|+. ..||+|+. +.+|+.+|+++|.+|.++=.+
T Consensus 1 m~iI~v~s------~KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVG------VKGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEe------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 67665554 23777765 567899999999999888654
No 255
>PRK05246 glutathione synthetase; Provisional
Probab=49.50 E-value=19 Score=34.98 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
.|||+|+.+... ...--.-.+..|+++-.++||+|.+++|..
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIE---SINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHH---HCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 489999996432 222223345679999999999999999863
No 256
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=49.20 E-value=23 Score=31.85 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.6
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
||.|..=..|++.|.+.||+|.+-..+.+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 67777778999999999999999876644
No 257
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=49.15 E-value=25 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.4
Q ss_pred eEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeecCC
Q 011163 10 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
+|..||+ ..||+|. ...+|+.+|+++|+.|.++-...+
T Consensus 3 ~iIVvTS------GKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTS------GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEec------CCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 5767776 3588875 456799999999999999976543
No 258
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=48.98 E-value=1.8e+02 Score=25.15 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=46.5
Q ss_pred cCCEEEECCC-CCCCchHHHHHhhcCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc
Q 011163 383 GSDIILCHSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 455 (492)
Q Consensus 383 ~adi~v~pS~-~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~ 455 (492)
..|++++-.. .+.-|+..++.+....|+|+... -.-.+..... ...|..|++..|.+.+.+.++|..++.
T Consensus 47 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~--~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 47 GVQVCICDISMPDISGLELLSQLPKGMATIMLSV--HDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEEC--CCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 4688887644 35567778888777788877654 2222322111 113567899999999999999998764
No 259
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=48.93 E-value=2e+02 Score=25.70 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=61.8
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEecc-CHHHHHHHH--hcCCEEEECCCCC----CCchHHHHHhh---c
Q 011163 337 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIF--SGSDIILCHSFHD----PLLQVPLKALK---Y 406 (492)
Q Consensus 337 ~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~-~~~~~~~~~--~~adi~v~pS~~E----~~glv~lEAma---~ 406 (492)
.+++|+.+. +.....++...+..+ .+...... +.++....+ ...|++++-.... ..|+..++.+. -
T Consensus 4 ~~Ilivdd~--~~~~~~l~~~L~~~~--~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~ 79 (216)
T PRK10840 4 MNVIIADDH--PIVLFGIRKSLEQIE--WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFP 79 (216)
T ss_pred eEEEEECCc--HHHHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCC
Confidence 567777633 344455555554432 22222222 333332333 2479888865432 25777777664 3
Q ss_pred CCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhc
Q 011163 407 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 455 (492)
Q Consensus 407 G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~ 455 (492)
.+|+|+... ..-.+.+... ...|..||+..+.+++.|.++|..+++
T Consensus 80 ~~~iIvls~--~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 80 SLSIIVLTM--NNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCcEEEEEe--cCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 456666543 2222222211 114677899999999999999998764
No 260
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=48.40 E-value=29 Score=34.83 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.9
Q ss_pred CCCceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEe
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~ 49 (492)
.++++|+.|+. ..||+|+. +..|+.+|+.+|++|.+|=
T Consensus 103 ~~~~~vIav~n------~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 103 DKNPVVLAVMS------HKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCCceEEEEec------CCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34477776665 24888875 5778999999999998885
No 261
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=48.38 E-value=28 Score=32.74 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=26.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHC---CCeEEEEeecCCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK---GHLVEVILPKYAC 54 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~---Gh~V~vi~~~~~~ 54 (492)
||||+.+++-.- .-| +..|+++|.+. |++|+|++|....
T Consensus 1 M~ILlTNDDGI~---a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGIN---APG----LEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCCC---CHh----HHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 899998887432 234 44555666554 4799999997553
No 262
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=47.85 E-value=34 Score=30.80 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCCceEEEEeeccccccccCcHHH--HHhHHHHHHHH-CCCeEEEEeec
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQR-KGHLVEVILPK 51 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~-~Gh~V~vi~~~ 51 (492)
...||++.|+.. .||+|+ ...+||.+|++ +|++|.++=.+
T Consensus 32 ~~~~~vi~v~s~------kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 32 KKNNNLIMVTSS------LPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCCeEEEEECC------CCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345787777752 355554 56779999997 69999988544
No 263
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=47.79 E-value=1.8e+02 Score=26.71 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=33.3
Q ss_pred eccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 370 DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 370 ~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
...+.++...+++.||++|....+ ..+=|+++|+|+|+-+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 244 YSLSPDELLELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred CCCCHHHHHHHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 345778888999999999988874 46679999999998653
No 264
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=47.44 E-value=28 Score=32.84 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.8
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||+|+. +.+|+.+|+++|++|.++=.
T Consensus 11 GGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 788765 57899999999999988853
No 265
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=47.18 E-value=1.3e+02 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=25.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCC--eEEEEeecCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILPKYA 53 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh--~V~vi~~~~~ 53 (492)
|||++++. |-++....+..++.+.++ +|.++.++.+
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~ 38 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNKP 38 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECCc
Confidence 68888775 456667788888888765 6666555543
No 266
>PRK09739 hypothetical protein; Provisional
Probab=47.15 E-value=50 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=30.3
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.|||++|.. +|.. .|=.......+.+++.+.||+|.++-..
T Consensus 3 mmkiliI~~--sp~~-~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 3 SMRIYLVWA--HPRH-DSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CceEEEEEc--CCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 589999987 4532 2345667777888888899999988654
No 267
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=46.72 E-value=28 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.3
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||+|+. +.+|+.+|+++|.+|.++=.
T Consensus 10 GGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 888875 57899999999999988853
No 268
>PRK09004 FMN-binding protein MioC; Provisional
Probab=46.56 E-value=38 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.4
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
.+|-++.+...|++.+.++|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 469999999999999999999998864
No 269
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.38 E-value=2.3e+02 Score=28.15 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=59.4
Q ss_pred eccccccCHHHHHHHHHHHhHcCcEEEEEecC-----------CChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHh
Q 011163 314 FSDVSDVFLENLKAVVRGAKMRGIQFVFTGTN-----------KLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 314 grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g-----------~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 382 (492)
+.+...+ .+++.++.+.+..++++..|.- ...+.-..+++.+++++ --.+...++.+.+..+..
T Consensus 126 c~iE~~~---~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~G--l~~~t~v~d~~~~~~l~~ 200 (360)
T PRK12595 126 CSVESYE---QVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYG--LAVISEIVNPADVEVALD 200 (360)
T ss_pred ccccCHH---HHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcC--CCEEEeeCCHHHHHHHHH
Confidence 3444444 5788888887666777765521 11122345666666663 223345667777767767
Q ss_pred cCCEEEECCC-CCCCchHHHHHhhcCCceEEEe
Q 011163 383 GSDIILCHSF-HDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 383 ~adi~v~pS~-~E~~glv~lEAma~G~PvV~~~ 414 (492)
.+|++=.||. .-.+++ +-++...|+||+.++
T Consensus 201 ~vd~lkI~s~~~~n~~L-L~~~a~~gkPVilk~ 232 (360)
T PRK12595 201 YVDVIQIGARNMQNFEL-LKAAGRVNKPVLLKR 232 (360)
T ss_pred hCCeEEECcccccCHHH-HHHHHccCCcEEEeC
Confidence 7999999997 455553 234456799999986
No 270
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=46.19 E-value=20 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
+||.|-.=..|...|.+.||+|++++.+.+.
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCcc
Confidence 4899999999999999999999999976543
No 271
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.15 E-value=3.1e+02 Score=27.13 Aligned_cols=99 Identities=20% Similarity=0.123 Sum_probs=62.4
Q ss_pred EEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCC-----------hhHHHHHHHHHHHhCCCeEEEEeccCHHHHH
Q 011163 310 VGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL-----------PSASRALVSFQEELKDGIVIFVDSYDDALLH 378 (492)
Q Consensus 310 i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~-----------~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 378 (492)
+...+.+... +.+++.++.+++..++++-.|.-.. .+-.+.+++..++++ --.+...++.+.+.
T Consensus 105 IAGPCsIEs~---eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~G--l~~~tev~d~~~v~ 179 (352)
T PRK13396 105 VAGPCSVENE---EMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATG--LGIITEVMDAADLE 179 (352)
T ss_pred EEeCCcccCH---HHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcC--CcEEEeeCCHHHHH
Confidence 3334445444 4689999888877777777552110 111234444455553 23335566777776
Q ss_pred HHHhcCCEEEECCC-CCCCchHHHHHhhcCCceEEEe
Q 011163 379 LIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 379 ~~~~~adi~v~pS~-~E~~glv~lEAma~G~PvV~~~ 414 (492)
.+...+|++=.+|+ ..+|.+ +-++...|+||+.++
T Consensus 180 ~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~ 215 (352)
T PRK13396 180 KIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeC
Confidence 77677999999998 567665 344557899999886
No 272
>PRK05723 flavodoxin; Provisional
Probab=45.31 E-value=39 Score=28.80 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=29.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
|||.++.. +.+|-.+.+...|++.|.+.|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 67777654 2579999999999999999999997753
No 273
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.29 E-value=2.6e+02 Score=26.09 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=61.3
Q ss_pred EEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC-----------ChhHHHHHHHHHHHhCCCeEEEEeccCHHHH
Q 011163 309 VVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK-----------LPSASRALVSFQEELKDGIVIFVDSYDDALL 377 (492)
Q Consensus 309 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~-----------~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~ 377 (492)
++...+.+..+ +.+++.++.+.+.+++++.-|.-+ ..+--+.|++..++++ --.+...++.+.+
T Consensus 18 ~iaGPC~vEs~---e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~G--l~~~Tev~d~~~v 92 (250)
T PRK13397 18 FIVGPCSIESY---DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFG--LLSVSEIMSERQL 92 (250)
T ss_pred EEeccCccCCH---HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcC--CCEEEeeCCHHHH
Confidence 34444444443 357777777766677777766311 0122345566666653 2233456677777
Q ss_pred HHHHhcCCEEEECCC-CCCCchHHHHHh-hcCCceEEEe
Q 011163 378 HLIFSGSDIILCHSF-HDPLLQVPLKAL-KYGAAPIAVT 414 (492)
Q Consensus 378 ~~~~~~adi~v~pS~-~E~~glv~lEAm-a~G~PvV~~~ 414 (492)
..+...+|++=.||. .-.+. ++++. ..|+||+.++
T Consensus 93 ~~~~e~vdilqIgs~~~~n~~--LL~~va~tgkPVilk~ 129 (250)
T PRK13397 93 EEAYDYLDVIQVGARNMQNFE--FLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHhcCCEEEECcccccCHH--HHHHHHccCCeEEEeC
Confidence 777778999999997 45555 44444 6799999876
No 274
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=45.20 E-value=10 Score=39.40 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=22.0
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
++=-..+..++++|+++||+|+++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4556778999999999999999999853
No 275
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.11 E-value=36 Score=31.12 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=24.3
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||.++|+ ||.+-.-..+++.|.++|++|.++...
T Consensus 5 ~~k~vlIt---------G~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALIT---------GASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 46766666 334444466788899999998887753
No 276
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.23 E-value=26 Score=32.12 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=24.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
-|+|++-..+++.|.++||+|.++-...
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 3678888999999999999999997653
No 277
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=44.20 E-value=1.4e+02 Score=26.67 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhH-cCcEEEEEecCCChhHHHHHHHHHHHhCC--CeEEEEeccCHHHHHHHHhcCCEEEECCC-CCCCc
Q 011163 322 LENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLL 397 (492)
Q Consensus 322 ~~~li~a~~~l~~-~~~~lvivG~g~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~adi~v~pS~-~E~~g 397 (492)
...|.+|++-+.+ .+-+++++|.. +.....+++.++..+. -+-+|+||.--.....-+..=|++++..- .|.
T Consensus 46 ~~~L~~A~~~i~~i~~~~ILfVgtk--~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~-- 121 (196)
T TIGR01012 46 DERLRVAAKFLVRIEPEDILVVSAR--IYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADH-- 121 (196)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecC--HHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcccc--
Confidence 4455556544432 25688999954 3455667777777642 11245555411111122455566666544 333
Q ss_pred hHHHHHhhcCCceEEEec
Q 011163 398 QVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 398 lv~lEAma~G~PvV~~~~ 415 (492)
.++.||...|.|+|+--.
T Consensus 122 ~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 122 QALKEASEVGIPIVALCD 139 (196)
T ss_pred HHHHHHHHcCCCEEEEee
Confidence 568999999999998543
No 278
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=44.15 E-value=38 Score=31.63 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=27.2
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHH-HCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQ-RKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~-~~Gh~V~vi~~~ 51 (492)
|+|+-|+. ..||+|+. ...|+.+|+ ..||+|.++=.+
T Consensus 2 ~~iI~v~n------~KGGvGKTT~a~nLa~~La~~~~~kVLliDlD 41 (259)
T COG1192 2 MKIIAVAN------QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLD 41 (259)
T ss_pred CEEEEEEe------cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 67766665 24888865 457999999 556999888544
No 279
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=43.97 E-value=34 Score=31.79 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.3
Q ss_pred cCcHHH--HHhHHHHHHHHCCCeEEEEee
Q 011163 24 IGSLAS--YVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~--~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.||+|+ .+.+|+.+|+++|.+|.++=.
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 488877 667899999999999988843
No 280
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=43.95 E-value=1.7e+02 Score=26.72 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=56.5
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHH-HHHHhc-CC
Q 011163 308 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALL-HLIFSG-SD 385 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~-ad 385 (492)
+++.+..+-.+++.++.|.++++++. +.-++.|+--.....++++.++++++..-+.-+.+.+++.+ .++... -+
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l~---~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRLK---VDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhCc---ccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCe
Confidence 34545555578888999999998885 77888885433455678888999885444444456666443 444443 56
Q ss_pred EEEECCCCCCCc
Q 011163 386 IILCHSFHDPLL 397 (492)
Q Consensus 386 i~v~pS~~E~~g 397 (492)
+.|.....++++
T Consensus 138 ~~Iv~Vsa~gL~ 149 (223)
T COG2102 138 AIIVAVSAEGLD 149 (223)
T ss_pred EEEEEEeccCCC
Confidence 666655555555
No 281
>PRK05920 aromatic acid decarboxylase; Validated
Probab=43.60 E-value=50 Score=29.75 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=27.2
Q ss_pred CceEEEEeeccccccccCcHH-HHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~-~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.+||++-.+ ||++ ....++.+.|.+.|++|.++...
T Consensus 3 ~krIllgIT--------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAIT--------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 467877654 3333 46778999999999999999854
No 282
>PLN02778 3,5-epimerase/4-reductase
Probab=43.19 E-value=37 Score=32.58 Aligned_cols=34 Identities=12% Similarity=-0.060 Sum_probs=25.5
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
+.+||||+ + ||.|-.=..|++.|.++||+|.+..
T Consensus 7 ~~~~kiLV-t---------G~tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 7 SATLKFLI-Y---------GKTGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCeEEE-E---------CCCCHHHHHHHHHHHhCCCEEEEec
Confidence 44589876 2 6666667788899999999997543
No 283
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=43.06 E-value=50 Score=35.66 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=30.2
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCC
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 54 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~ 54 (492)
.++||++|++ +|- -....+......|.++||+|+|++...++
T Consensus 368 ~~~rvLv~sp--HPD----Devi~~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 368 YPKRVIIFSP--HPD----DDVISMGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred CCceEEEEEe--CCC----chHhhhHHHHHHHHHCCCcEEEEEecCCc
Confidence 3489999998 563 23333455567899999999999876554
No 284
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.73 E-value=2.8e+02 Score=27.57 Aligned_cols=111 Identities=9% Similarity=0.104 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCCC-CCCceEEEEEeccccccC-HHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHH--------
Q 011163 290 VCKVTLQQQLGLSK-DASTIVVGCIFSDVSDVF-LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQE-------- 359 (492)
Q Consensus 290 ~~~~~~~~~lg~~~-~~~~~~i~~~grl~~~Kg-~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~-------- 359 (492)
..+..+.+++|++. .++...+...+ ..+. +..+++++.... ..+.+.+.+ |.- ...+++...
T Consensus 166 ~~~~~~~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~~-~pv~llvp~-g~~---~~~~~~~~~~~~~~~g~ 237 (374)
T PF10093_consen 166 AARAAFLRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAASP-KPVHLLVPE-GRA---LNSLAAWLGDALLQAGD 237 (374)
T ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcCC-CCeEEEecC-Ccc---HHHHHHHhccccccCcc
Confidence 46778889999963 22223322222 3333 667888877553 367888877 421 222222111
Q ss_pred --HhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEE
Q 011163 360 --ELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV 413 (492)
Q Consensus 360 --~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~ 413 (492)
..+.-.+..+..+++++...++-.||+-++ +-|- +.+-|+-.|+|-|=.
T Consensus 238 ~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfV--RGED---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 238 SWQRGNLTLHVLPFVPQDDYDRLLWACDFNFV--RGED---SFVRAQWAGKPFVWH 288 (374)
T ss_pred ccccCCeEEEECCCCCHHHHHHHHHhCccceE--ecch---HHHHHHHhCCCceEe
Confidence 111134555666688889999999999775 3333 467899999987754
No 285
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=42.47 E-value=85 Score=24.62 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=22.1
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCeEE
Q 011163 336 GIQFVFTGTNKLPSASRALVSFQEELKDGIVI 367 (492)
Q Consensus 336 ~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~ 367 (492)
+.+++++||.++.+ .+...+++++++ ++|.
T Consensus 64 ~~kfiLIGDsgq~D-peiY~~ia~~~P-~~i~ 93 (100)
T PF09949_consen 64 ERKFILIGDSGQHD-PEIYAEIARRFP-GRIL 93 (100)
T ss_pred CCcEEEEeeCCCcC-HHHHHHHHHHCC-CCEE
Confidence 67999999976544 456677888885 6664
No 286
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=42.38 E-value=36 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.9
Q ss_pred CcHHHH--HhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASY--VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||+|+. +.+|+.+|+++|.+|.++=.
T Consensus 10 GGVGKTT~a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEee
Confidence 888876 47899999999999988844
No 287
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=42.06 E-value=36 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=21.9
Q ss_pred cCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+|+.+ .+||.+|+++|++|.++=.+
T Consensus 9 KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47777655 55999999999999888543
No 288
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.88 E-value=29 Score=31.29 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
|..+++|. +|- .|-.++..+|+++|.+.+|+|..++..|.
T Consensus 1 mpLiIlTG--yPg---sGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 1 MPLIILTG--YPG---SGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred CceEEEec--CCC---CCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 44555553 452 57889999999999999999988886543
No 289
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.79 E-value=1e+02 Score=28.86 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 377 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 377 ~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
+.+++..+|+++-.|..+...-....|+..|+|+|+..+
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigtt 92 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTT 92 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 345566799999777655555567788999999998765
No 290
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=41.70 E-value=78 Score=19.02 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=19.8
Q ss_pred ceEEEEeecc--ccccccCcHHHHHhHHHHHHHHCCCeEE
Q 011163 9 FHIIHICTEM--DPLVSIGSLASYVTGLSGALQRKGHLVE 46 (492)
Q Consensus 9 mkIl~v~~~~--~p~~~~GG~~~~~~~l~~~L~~~Gh~V~ 46 (492)
|||+++.-.- .-+ + --...-.--|++-+.++|.+|.
T Consensus 1 mkiai~n~gnni~~f-k-t~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNF-K-TTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSS-S-SHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceece-e-ecCccceEeHHHHHHHhCCCCC
Confidence 7899887532 111 1 1122334457888999998874
No 291
>PLN02206 UDP-glucuronate decarboxylase
Probab=41.41 E-value=35 Score=34.90 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.9
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
++.|||++ + ||.|-.=..|++.|.++|++|.++.
T Consensus 117 ~~~~kILV-T---------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 117 RKGLRVVV-T---------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cCCCEEEE-E---------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 34588865 2 6777777889999999999998875
No 292
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.28 E-value=1.3e+02 Score=26.76 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=36.9
Q ss_pred eEEEEEecc-ccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhC
Q 011163 308 IVVGCIFSD-VSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK 362 (492)
Q Consensus 308 ~~i~~~grl-~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~ 362 (492)
.+++++|.. ....+ .+.++.+++++.++++-++|-|...+-.+.|+.+.+..+
T Consensus 109 rivi~v~S~~~~d~~--~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 109 RIVAFVGSPIEEDEK--DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred eEEEEEecCCcCCHH--HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 456777776 33323 577888899888999988887744344567777777764
No 293
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.19 E-value=37 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+++.. |.+| ..++..|.+.||+|+++...
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78877654 5555 45667788899999999864
No 294
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.13 E-value=50 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.8
Q ss_pred CceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.|||++++- .||+|+ ..-.++-.|++.|..|.+++..
T Consensus 1 ~~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 1 MTRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred CcEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 378888774 499999 6666778899999888888643
No 295
>PRK07308 flavodoxin; Validated
Probab=40.01 E-value=53 Score=27.59 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=24.5
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.+|.++.+...+++.|.+.|++|.+.-.
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 4699999999999999999999887643
No 296
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=39.53 E-value=48 Score=32.22 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCCceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEe
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~ 49 (492)
.+.+||+-|+. ..||+|+.+ .+|+.+|+++|.+|.++=
T Consensus 90 ~~~~~vIav~~------~KGGvGkTT~a~nLA~~la~~g~~VlLvD 129 (322)
T TIGR03815 90 PARGVVVAVIG------GRGGAGASTLAAALALAAARHGLRTLLVD 129 (322)
T ss_pred CCCceEEEEEc------CCCCCcHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34577666664 247777665 789999999999988774
No 297
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=39.50 E-value=50 Score=33.15 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=27.4
Q ss_pred CceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEe
Q 011163 8 GFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~ 49 (492)
+++|+-|+. ..||+|+. +.+|+.+|+++|.+|.+|=
T Consensus 105 ~~~vIai~n------~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 105 FPPVIGVAA------HKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCeEEEEEC------CCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 356666665 24888876 5789999999999998884
No 298
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=39.41 E-value=46 Score=32.71 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=26.8
Q ss_pred cccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 3 KWLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 3 ~~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
-.....|||++. ||.+-.-..+++.|.++|++|.++..
T Consensus 5 ~~~~~~~~vLVt----------G~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVT----------GATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 345566898663 45555556778889999999988754
No 299
>PRK05568 flavodoxin; Provisional
Probab=38.93 E-value=71 Score=26.51 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.5
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||++|.. +.+|.++..+..+++++.+.|++|.++-..
T Consensus 3 ~~~IvY~-----S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 3 KINIIYW-----SGTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred eEEEEEE-----CCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4555553 256999999999999999999999888543
No 300
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=38.88 E-value=4.1e+02 Score=26.56 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCC-CeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCccccccccccc
Q 011163 351 SRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE 429 (492)
Q Consensus 351 ~~~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~~ 429 (492)
..-...++...+. .++.+...-..+++...++++|+.|-.-.+ +++=||+.|+|+|+-... +-...+.++
T Consensus 252 ~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~-~K~~~l~~~--- 322 (385)
T COG2327 252 LAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYD-PKVRGLMQD--- 322 (385)
T ss_pred hHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeec-HHHHHHHHH---
Confidence 3444445554432 677654322235666788999998865442 467799999999987651 111222221
Q ss_pred ccceeeeee--cCCCHHHHHHHHHHHh-cCHHHHHH
Q 011163 430 STRFSRFIS--STFGNISLSQALEEIK-NNPLSWKR 462 (492)
Q Consensus 430 ~~g~~G~~~--~~~~~~~l~~ai~~~~-~~~~~~~~ 462 (492)
.|..|+.. .+.+.+.+..+..+.+ ++++.+++
T Consensus 323 -~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 323 -LGLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred -cCCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 23334443 3455667766655544 45554433
No 301
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.67 E-value=47 Score=31.16 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||++- -..|+++|.+.||+|.+.+..
T Consensus 7 GGT~e-gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 7 GGTVD-SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred echHH-HHHHHHHHHhCCCeEEEEEcc
Confidence 67775 899999999999999887754
No 302
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=38.63 E-value=3.9e+02 Score=26.23 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=59.8
Q ss_pred eecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCc
Q 011163 258 VAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGI 337 (492)
Q Consensus 258 vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~ 337 (492)
.|-||-+ +..+|. ..-.+--.+++++|...+-+...+.++|-.. .=...++.++..+ ++
T Consensus 121 PVINa~~-~~~HPt---------------QaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~--~v~~Sl~~~~~~~---g~ 179 (338)
T PRK02255 121 PVINGMS-DYNHPT---------------QELGDLFTMIEHLPEGKKLEDCKVVFVGDAT--QVCVSLMFIATKM---GM 179 (338)
T ss_pred CEEECCC-CCCChH---------------HHHHHHHHHHHHhCCCCCCCCCEEEEECCCc--hHHHHHHHHHHhC---CC
Confidence 3567765 456775 1122445667777521111236788999763 2244555555444 68
Q ss_pred EEEEEecCC---ChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCC
Q 011163 338 QFVFTGTNK---LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFH 393 (492)
Q Consensus 338 ~lvivG~g~---~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~ 393 (492)
++.+++..+ .++..+.+++.++..+ ..+... -+ ..+.+..||++...++.
T Consensus 180 ~v~~~~P~~~~~~~~~~~~~~~~~~~~g-~~~~~~--~d---~~eav~~aDvvy~~~w~ 232 (338)
T PRK02255 180 DFVHFGPKGYQLPEEHLAIAEENCEVSG-GSVLVT--DD---VDEAVKDADFVYTDVWY 232 (338)
T ss_pred EEEEECCCccccCHHHHHHHHHHHHhcC-CeEEEE--cC---HHHHhCCCCEEEEcccH
Confidence 999998532 1123344444444442 345432 12 23567999999886643
No 303
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=38.60 E-value=64 Score=29.87 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=30.0
Q ss_pred ccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCCCC
Q 011163 4 WLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACM 55 (492)
Q Consensus 4 ~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~~~ 55 (492)
.....++||.|.+ +|-...=| +......+.++|++|.+++...+..
T Consensus 6 ~~~~~~~vL~v~a--HPDDe~~g----~ggtla~~~~~G~~V~v~~lT~Ge~ 51 (237)
T COG2120 6 PMLDPLRVLVVFA--HPDDEEIG----CGGTLAKLAARGVEVTVVCLTLGEA 51 (237)
T ss_pred ccccCCcEEEEec--CCcchhhc----cHHHHHHHHHCCCeEEEEEccCCcc
Confidence 3455689999998 45322112 2233344689999999999876643
No 304
>PRK05717 oxidoreductase; Validated
Probab=38.57 E-value=55 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=25.3
Q ss_pred ccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 4 WLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 4 ~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.++-..|+++|+ ||.+-.-..+++.|.++|++|.++..
T Consensus 5 ~~~~~~k~vlIt---------G~sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 5 NPGHNGRVALVT---------GAARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred CcccCCCEEEEe---------CCcchHHHHHHHHHHHcCCEEEEEcC
Confidence 333344766766 34444446778999999999988754
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.37 E-value=4.5e+02 Score=26.82 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHHHHHHhHcCcEEEEEecCC----ChhHHHHHHHHHHHhCCCeEEEEe-ccCH-H---HHHHHHh--cCCEEEECCCC-
Q 011163 326 KAVVRGAKMRGIQFVFTGTNK----LPSASRALVSFQEELKDGIVIFVD-SYDD-A---LLHLIFS--GSDIILCHSFH- 393 (492)
Q Consensus 326 i~a~~~l~~~~~~lvivG~g~----~~~~~~~l~~~~~~~~~~~v~~~~-~~~~-~---~~~~~~~--~adi~v~pS~~- 393 (492)
-++++.+...+..++|+-..| +....+++.++.+...++.+.++. .... + ....+.. ..+-+|+.-.-
T Consensus 172 ~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 345555444456666665433 234455666555554334444332 2221 1 1112221 23345555332
Q ss_pred -CCCchHHHHHhhcCCceEEEecCCCcc-cccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Q 011163 394 -DPLLQVPLKALKYGAAPIAVTSSDIEF-RHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQD 471 (492)
Q Consensus 394 -E~~glv~lEAma~G~PvV~~~~~~gg~-~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~ 471 (492)
.-.|.++--+.+.|+|+....+ |-- .|+-..+. +....-+..-+|..+|.+.++...+ .+..+++.+.-...+
T Consensus 252 ~~~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl~~f~p--~~~~~~iLg~gD~~~l~e~~~~~~~-~~~~~~~~~~~~~~~ 326 (428)
T TIGR00959 252 DARGGAALSVRSVTGKPIKFIGV--GEKIDDLEPFHP--ERMASRILGMGDILSLVEKAQEVVD-EEEAKKLAEKMKKGQ 326 (428)
T ss_pred cccccHHHHHHHHHCcCEEEEeC--CCChhhCccCCH--HHHHHHHhCCCChHHHHHHHHHhhC-HHHHHHHHHHHHhCC
Confidence 2355555455678998888766 422 22211111 1122345667888888888888764 333455555544467
Q ss_pred CCchhhHHHHHHH
Q 011163 472 FSWDADCNDIHIS 484 (492)
Q Consensus 472 fsw~~~a~~~~~~ 484 (492)
|+.+.+-+|+ ..
T Consensus 327 f~l~d~~~q~-~~ 338 (428)
T TIGR00959 327 FDLEDFLEQL-RQ 338 (428)
T ss_pred CCHHHHHHHH-HH
Confidence 9998888774 53
No 306
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=37.83 E-value=2.9e+02 Score=28.42 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=68.2
Q ss_pred eEEEEEeccc-----cccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhC---CCeEEEEeccCHHHHHH
Q 011163 308 IVVGCIFSDV-----SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK---DGIVIFVDSYDDALLHL 379 (492)
Q Consensus 308 ~~i~~~grl~-----~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~---~~~v~~~~~~~~~~~~~ 379 (492)
.++++.|... +.+-...++.+++.+ ++..|++.=...+.. . +.++.. .++|...+..++.++-
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--~~~~FiW~~~~~~~~-~-----~~~~~~~~~~~nV~~~~W~PQ~~ll- 349 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL--QGVTFLWKYRPDDSI-Y-----FPEGLPNRGRGNVVLSKWAPQNDLL- 349 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC--CCceEEEEecCCcch-h-----hhhcCCCCCcCceEEecCCCcHHHh-
Confidence 4555566653 455555667777666 367777765332111 1 222221 2468776677664431
Q ss_pred HHhc--CCEEEECCCCCCCchHHHHHhhcCCceEEEecCCCcccccccccc--cccceeeeeec--CCCHHHHHHHHHHH
Q 011163 380 IFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH--ESTRFSRFISS--TFGNISLSQALEEI 453 (492)
Q Consensus 380 ~~~~--adi~v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~~~~--~~~g~~G~~~~--~~~~~~l~~ai~~~ 453 (492)
++. ..+|+ +. =|++ +.+||..+|+|+|+... ..|...... ...|..+.+.. ..+.+ +.+++..+
T Consensus 350 -l~H~~v~~Fv--TH-gG~n-St~E~~~~GvP~v~~Pl----f~DQ~~Na~~i~~~g~~~v~~~~~~~~~~-~~~~~~~i 419 (496)
T KOG1192|consen 350 -LDHPAVGGFV--TH-GGWN-STLESIYSGVPMVCVPL----FGDQPLNARLLVRHGGGGVLDKRDLVSEE-LLEAIKEI 419 (496)
T ss_pred -cCCCcCcEEE--EC-Cccc-HHHHHHhcCCceecCCc----cccchhHHHHHHhCCCEEEEehhhcCcHH-HHHHHHHH
Confidence 222 23344 32 1333 45999999999996443 223211000 01233334332 22333 78888888
Q ss_pred hcCHHHH
Q 011163 454 KNNPLSW 460 (492)
Q Consensus 454 ~~~~~~~ 460 (492)
+.+++..
T Consensus 420 l~~~~y~ 426 (496)
T KOG1192|consen 420 LENEEYK 426 (496)
T ss_pred HcChHHH
Confidence 8776643
No 307
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.79 E-value=40 Score=32.33 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+++.. |++|. .++..|.+.||+|++++.
T Consensus 1 mkI~IiG~--------G~iG~---~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVGG---TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHHH---HHHHHHHHCCCceEEEec
Confidence 78888654 55554 456678889999999986
No 308
>PRK14982 acyl-ACP reductase; Provisional
Probab=37.73 E-value=4.1e+02 Score=26.15 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=69.0
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCC-CCCchHHHHHhhcCCceEEEec
Q 011163 337 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFH-DPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 337 ~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~-E~~glv~lEAma~G~PvV~~~~ 415 (492)
.++++++.. .+.+.+++.++....+ ..+...+..+|+++...-. ++. .+.+.....|.+..|.
T Consensus 182 ~~lilv~R~-----~~rl~~La~el~~~~i--------~~l~~~l~~aDiVv~~ts~~~~~---~I~~~~l~~~~~viDi 245 (340)
T PRK14982 182 AELLLVARQ-----QERLQELQAELGGGKI--------LSLEEALPEADIVVWVASMPKGV---EIDPETLKKPCLMIDG 245 (340)
T ss_pred CEEEEEcCC-----HHHHHHHHHHhccccH--------HhHHHHHccCCEEEECCcCCcCC---cCCHHHhCCCeEEEEe
Confidence 477777732 2345555555421111 1244678899998877543 332 1222233678898887
Q ss_pred CCCcccccccccccccce----eeeeecCCCHH-HHHHHHHHHhcCHHHHHHHHHHHH---h---ccCCchhh---HHHH
Q 011163 416 SDIEFRHFAEFDHESTRF----SRFISSTFGNI-SLSQALEEIKNNPLSWKRKIKDAM---L---QDFSWDAD---CNDI 481 (492)
Q Consensus 416 ~~gg~~e~v~~~~~~~g~----~G~~~~~~~~~-~l~~ai~~~~~~~~~~~~~~~~a~---~---~~fsw~~~---a~~~ 481 (492)
+=.+++ +.....++. -|.+--|.|.+ +|.+.++.-+........+++.-. + ++|||-+. .++.
T Consensus 246 --AvPRDV-d~~v~~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v 322 (340)
T PRK14982 246 --GYPKNL-DTKVQGPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQMFACFAEAMLLEFEGCHTNFSWGRNQITLEKM 322 (340)
T ss_pred --cCCCCC-CcccCCCCEEEEeCCccccCCCcCccHHHHHhccchhhHHHHHHHHHHHHHhcCCccCCCcCccccCHHHH
Confidence 444454 322211111 13444466766 554444432222223333443332 2 79999844 6774
Q ss_pred HHHHHHHHhc
Q 011163 482 HISAYTAIKN 491 (492)
Q Consensus 482 ~~~~Y~~l~~ 491 (492)
+++++-..|
T Consensus 323 -~~i~~~a~k 331 (340)
T PRK14982 323 -EFIGEASVK 331 (340)
T ss_pred -HHHHHHHHH
Confidence 777775543
No 309
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.46 E-value=4.6e+02 Score=26.72 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhHcCcEEEEEecCC----ChhHHHHHHHHHHHhCCCeEEEEecc----CH-HHHHHHHh--cCCEEEECC
Q 011163 323 ENLKAVVRGAKMRGIQFVFTGTNK----LPSASRALVSFQEELKDGIVIFVDSY----DD-ALLHLIFS--GSDIILCHS 391 (492)
Q Consensus 323 ~~li~a~~~l~~~~~~lvivG~g~----~~~~~~~l~~~~~~~~~~~v~~~~~~----~~-~~~~~~~~--~adi~v~pS 391 (492)
....++++++.+.+..+||+=..| +..+.+++.++.+...++.+.++..- +. ++...+-. ..+-+|++-
T Consensus 169 ~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 169 KIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITK 248 (429)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEEC
Confidence 344557777665567777775322 23455666666555434555554322 11 23323322 245577776
Q ss_pred CCC--CCchHHHHHhhcCCceEEEecCCCccccccc-ccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011163 392 FHD--PLLQVPLKALKYGAAPIAVTSSDIEFRHFAE-FDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAM 468 (492)
Q Consensus 392 ~~E--~~glv~lEAma~G~PvV~~~~~~gg~~e~v~-~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~ 468 (492)
..| ..|-.+-=+...|+|+.-..+ |--.+-++ ... +....-+..-+|..+|.++++...+. +..+++.+.-.
T Consensus 249 lD~~argG~aLs~~~~t~~PI~fig~--Ge~v~Dle~f~p--~~~~~rilgmgDi~~L~ek~~~~~~~-~~~~~~~~k~~ 323 (429)
T TIGR01425 249 LDGHAKGGGALSAVAATKSPIIFIGT--GEHIDDFEIFKT--QPFISKLLGMGDIEGLIDKVQDLKLD-DNEKALIEKLK 323 (429)
T ss_pred ccCCCCccHHhhhHHHHCCCeEEEcC--CCChhhcCcCCh--HHHHHHHhcCCCcHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 543 455555567788998888666 42222111 100 01112344567777888888887543 33445555555
Q ss_pred hccCCchhhHHHHHHH
Q 011163 469 LQDFSWDADCNDIHIS 484 (492)
Q Consensus 469 ~~~fsw~~~a~~~~~~ 484 (492)
..+|+.+.+-+|+ ..
T Consensus 324 ~~~f~l~D~~~q~-~~ 338 (429)
T TIGR01425 324 EGTFTLRDMYEQF-QN 338 (429)
T ss_pred hCCCCHHHHHHHH-HH
Confidence 5789998888774 53
No 310
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=37.45 E-value=88 Score=25.54 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=28.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCC-CeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~G-h~V~vi~~~ 51 (492)
||+.++..+ +|+.. =-......+++++.+.| ++|.|+-..
T Consensus 1 m~~~Ivvt~-ppYg~--q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPYGT--ESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCCcc--HHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788887764 67622 23455788999999996 688888754
No 311
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.33 E-value=59 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
-+||+.+. ..||+| ++|++++.+.|+.|.--+....
T Consensus 8 k~VlItgc------s~GGIG---~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 8 KKVLITGC------SSGGIG---YALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CeEEEeec------CCcchh---HHHHHHHHhCCeEEEEEccccc
Confidence 46766665 469998 6899999999999976665433
No 312
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.32 E-value=58 Score=31.23 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=30.4
Q ss_pred CCceEEEEeeccccccccCcHH-HHHhHHHHHHHHCCCeEEEEeec
Q 011163 7 NGFHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~-~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
++|||++++....|.. .+. .....+.++|.++||+|.++-..
T Consensus 3 ~~~~v~~~~g~~~~~~---~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAER---EVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCc---eEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4569999997655532 222 23488999999999999998654
No 313
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=37.29 E-value=48 Score=30.85 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=24.2
Q ss_pred eEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeecC
Q 011163 10 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
||..|..+ .||+|+ ...+|+-+|+++|++|-++=.+.
T Consensus 1 HiIvV~sg------KGGvGKSTva~~lA~aLa~~G~kVg~lD~Di 39 (261)
T PF09140_consen 1 HIIVVGSG------KGGVGKSTVAVNLAVALARMGKKVGLLDLDI 39 (261)
T ss_dssp EEEEEE-S------STTTTHHHHHHHHHHHHHCTT--EEEEE--T
T ss_pred CEEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45566653 488775 55679999999999999996553
No 314
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=37.26 E-value=82 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=34.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+.|+.- |.. .|-+...+...++++.+.|.+|.++...
T Consensus 1 mki~~I~gs--~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 1 MKILGINGS--PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CeeeEEEec--CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 788888863 433 6999999999999999999999999865
No 315
>PRK06924 short chain dehydrogenase; Provisional
Probab=36.56 E-value=51 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=23.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.++|+- ..||+| ..+++.|.++|++|.+++..
T Consensus 1 ~k~vlItG------asggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 1 MRYVIITG------TSQGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred CcEEEEec------CCchHH---HHHHHHHHhcCCEEEEEeCC
Confidence 55555552 235555 56789999999999877643
No 316
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.48 E-value=40 Score=31.45 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.9
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
||.|..-..++++|.++||+|.+++++..
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~~ 35 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNPE 35 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCHH
Confidence 66666667888999999999999998744
No 317
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=36.42 E-value=82 Score=25.41 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=30.3
Q ss_pred ceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+.|+. -| .|-..+|+ ..|.++-.++||++.|=+-.
T Consensus 3 mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 3 AYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred ceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 89999987 23 47777777 66888888899999988854
No 318
>PLN02427 UDP-apiose/xylose synthase
Probab=36.24 E-value=52 Score=32.84 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=27.1
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHC-CCeEEEEee
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILP 50 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~-Gh~V~vi~~ 50 (492)
+..+|||++ + ||.|-.=..|++.|.++ |++|.++..
T Consensus 11 ~~~~~~VlV-T---------GgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICM-I---------GAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEE-E---------CCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 345689865 3 67777778889999998 599988763
No 319
>PRK05693 short chain dehydrogenase; Provisional
Probab=36.02 E-value=50 Score=30.97 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=24.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.++|+- ..||+|. .+++.|.++|++|.+++..
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 56666664 3577774 6677788999999877643
No 320
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=35.79 E-value=58 Score=29.90 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=27.1
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+++.++. ..||.|+. +..|+.+|+++|-.|.+|=.+
T Consensus 1 M~vItf~s------~KGGaGKTT~~~~LAs~la~~G~~V~lIDaD 39 (231)
T PF07015_consen 1 MPVITFAS------SKGGAGKTTAAMALASELAARGARVALIDAD 39 (231)
T ss_pred CCeEEEec------CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56555554 24888765 566899999999999999654
No 321
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=35.41 E-value=1.6e+02 Score=25.18 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhHc---CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEecc-----CHH----HHHHHHhc--CCEEE
Q 011163 323 ENLKAVVRGAKMR---GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-----DDA----LLHLIFSG--SDIIL 388 (492)
Q Consensus 323 ~~li~a~~~l~~~---~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~-----~~~----~~~~~~~~--adi~v 388 (492)
..++++..++.+. .+..+++|+. +...+.+++....++.++|.....- +.+ .+.+++.. .|+++
T Consensus 18 ~e~l~~A~~La~~~g~~v~av~~G~~--~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl 95 (164)
T PF01012_consen 18 LEALEAARRLAEALGGEVTAVVLGPA--EEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVL 95 (164)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETC--CCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecc--hhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3677777788763 4677788832 2456667776665544777765322 233 23344444 89999
Q ss_pred ECCCCCCCchHHHHHhhcCCceEE
Q 011163 389 CHSFHDPLLQVPLKALKYGAAPIA 412 (492)
Q Consensus 389 ~pS~~E~~glv~lEAma~G~PvV~ 412 (492)
+|+...+-.+...=|...|.|.+.
T Consensus 96 ~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp EESSHHHHHHHHHHHHHHT-EEEE
T ss_pred EcCcCCCCcHHHHHHHHhCCCccc
Confidence 998765555777778888986665
No 322
>PRK06849 hypothetical protein; Provisional
Probab=35.38 E-value=54 Score=32.83 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=27.0
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+++|+||++.. -......+++.|.+.||+|.++...
T Consensus 2 ~~~~~VLI~G~----------~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 2 NTKKTVLITGA----------RAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCCEEEEeCC----------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35688887543 2235788999999999999988654
No 323
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=35.20 E-value=81 Score=27.99 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.5
Q ss_pred CcHHHHHh--HHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVT--GLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~--~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+.+.+-. ++.+.|.+.|++|.++...
T Consensus 9 Gs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 9 GSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred cHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 67776665 8999999999999998754
No 324
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.08 E-value=41 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.8
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|..-..+++.|.++||+|++++..
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 677777788999999999999999976
No 325
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=35.01 E-value=4.2e+02 Score=25.51 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=62.9
Q ss_pred eecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCc
Q 011163 258 VAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGI 337 (492)
Q Consensus 258 vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~ 337 (492)
.|-|+-|-+.++|.- .-.+--.+++.+|-- +...+.++|-.....=...++.++..+ ++
T Consensus 119 PVINa~~g~~~HPtQ---------------~LaDl~Ti~e~~g~l---~g~~va~vGD~~~~~v~~Sl~~~~a~~---g~ 177 (301)
T TIGR00670 119 PVINAGDGSNQHPTQ---------------TLLDLYTIYEEFGRL---DGLKIALVGDLKYGRTVHSLAEALTRF---GV 177 (301)
T ss_pred CEEeCCCCCCCCcHH---------------HHHHHHHHHHHhCCC---CCCEEEEEccCCCCcHHHHHHHHHHHc---CC
Confidence 366777645577751 122445677777732 236788899664444466777777665 68
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC
Q 011163 338 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 392 (492)
Q Consensus 338 ~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~ 392 (492)
++.+++..+- +..+.+.+.+++.+ ..+... + ...+.++.||++...+.
T Consensus 178 ~v~~~~P~~~-~~~~~~~~~~~~~G-~~v~~~---~--d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 178 EVYLISPEEL-RMPKEILEELKAKG-IKVRET---E--SLEEVIDEADVLYVTRI 225 (301)
T ss_pred EEEEECCccc-cCCHHHHHHHHHcC-CEEEEE---C--CHHHHhCCCCEEEECCc
Confidence 9999985321 12233444444442 455432 1 22356799999988775
No 326
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=34.83 E-value=4.6e+02 Score=26.71 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=62.7
Q ss_pred eeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCC-CCCCCceEEEEEeccccccCHHHHHHHHHHHhHc
Q 011163 257 LVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL-SKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR 335 (492)
Q Consensus 257 ~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~ 335 (492)
..|-|+-|.+..+|.- .-.+--.+++++|- ..+-+...++++|-+...+=...++.++..+ .
T Consensus 205 vPVINAgdg~~~HPtQ---------------aLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~--~ 267 (429)
T PRK11891 205 LPVINGGDGPGEHPSQ---------------ALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALY--R 267 (429)
T ss_pred CCEEECCCCCCCCcHH---------------HHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHh--c
Confidence 4467888766778851 12244567777763 1101235788899764344455666665443 2
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC
Q 011163 336 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 392 (492)
Q Consensus 336 ~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~ 392 (492)
++++.+++..+- +..+.+.+.+++.+ ..|.+. + ...+.+..||++...+.
T Consensus 268 G~~v~l~~P~~~-~~~~~~~~~~~~~G-~~v~~~---~--d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 268 GLKFTLVSPPTL-EMPAYIVEQISRNG-HVIEQT---D--DLAAGLRGADVVYATRI 317 (429)
T ss_pred CCEEEEECCCcc-ccCHHHHHHHHhcC-CeEEEE---c--CHHHHhCCCCEEEEcCc
Confidence 689999985321 12233334444432 455533 1 22356799999988764
No 327
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=34.74 E-value=54 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
||+++|+- ..||+| ..+++.|.++|++|.++.
T Consensus 1 ~~~~lItG------a~g~iG---~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 1 MAIALVTG------GSRGIG---RATALLLAQEGYTVAVNY 32 (247)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEe
Confidence 56666663 235555 568888999999997754
No 328
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=34.47 E-value=57 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=32.7
Q ss_pred CceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeecCCCC
Q 011163 8 GFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYACM 55 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~~~~ 55 (492)
+..|+.|.. ...||+|+ ++..|++.|.++|+++.|++..|+..
T Consensus 34 ~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 34 PVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred CCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 345555443 24577775 68899999999999999999988753
No 329
>PRK08105 flavodoxin; Provisional
Probab=34.31 E-value=75 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=25.2
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.+|-++.+...|++.|.++|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 4699999999999999999999988764
No 330
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=34.28 E-value=3.8e+02 Score=25.17 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhHcCcEEEEE-------------ecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEE
Q 011163 321 FLENLKAVVRGAKMRGIQFVFT-------------GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDII 387 (492)
Q Consensus 321 g~~~li~a~~~l~~~~~~lviv-------------G~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~ 387 (492)
..+.+++.++++.+...++... |.| .+--+.+++.+++++ --.+...++.+.+..+...+|++
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g--~~gl~~l~~~~~~~G--l~~~t~~~d~~~~~~l~~~~d~l 112 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG--EEGLKLLRRAADEHG--LPVVTEVMDPRDVEIVAEYADIL 112 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH--HHHHHHHHHHHHHhC--CCEEEeeCChhhHHHHHhhCCEE
Confidence 3456777777776533333222 111 122235666666653 22334566777776676779999
Q ss_pred EECCC-CCCCchHHHHHhhcCCceEEEec
Q 011163 388 LCHSF-HDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 388 v~pS~-~E~~glv~lEAma~G~PvV~~~~ 415 (492)
-.||. ...+.+ +-++...|+||+.++-
T Consensus 113 kI~s~~~~n~~L-L~~~a~~gkPVilk~G 140 (260)
T TIGR01361 113 QIGARNMQNFEL-LKEVGKQGKPVLLKRG 140 (260)
T ss_pred EECcccccCHHH-HHHHhcCCCcEEEeCC
Confidence 99997 455443 2334567999999863
No 331
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=34.08 E-value=3e+02 Score=23.53 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=53.4
Q ss_pred eEEEEEeccccccCHHHHHHHH------HHHhHcC-cEEEE-EecCCChhHHHHHHHHHHHhCCCeEEEEe-ccCHHHHH
Q 011163 308 IVVGCIFSDVSDVFLENLKAVV------RGAKMRG-IQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVD-SYDDALLH 378 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~------~~l~~~~-~~lvi-vG~g~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~ 378 (492)
-+|+.+|.=. ++.||.+. .+|.+.+ .+|+| +|.| .....+...... .. +.+...+ .|.++ +.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg-~~~~~d~~~~~~-k~--~gl~id~y~f~ps-l~ 75 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRG-QPFFGDPIDLIR-KN--GGLTIDGYDFSPS-LT 75 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCC-ccCCCCHHHhhc-cc--CCeEEEEEecCcc-HH
Confidence 4677888643 77888776 3344444 36665 4544 111122222222 22 2232221 33443 34
Q ss_pred HHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 379 LIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 379 ~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
++++.||+++ |.. |- =+++|.+..|+|.|+.-+
T Consensus 76 e~I~~AdlVI--sHA-Ga-GS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 76 EDIRSADLVI--SHA-GA-GSCLETLRLGKPLIVVVN 108 (170)
T ss_pred HHHhhccEEE--ecC-Cc-chHHHHHHcCCCEEEEeC
Confidence 6778899998 442 22 368999999999998655
No 332
>PRK05569 flavodoxin; Provisional
Probab=34.07 E-value=92 Score=25.79 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.3
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||+++.. . .+|.++..+..+++++.+.|++|.++-..
T Consensus 3 ki~iiY~--S---~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 3 KVSIIYW--S---CGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred eEEEEEE--C---CCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 6666653 2 36999999999999999999998777543
No 333
>PHA02518 ParA-like protein; Provisional
Probab=33.87 E-value=60 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=22.6
Q ss_pred cCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+|+.+ .+|+.+|+++|++|.++=.+
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 38887655 67899999999999888654
No 334
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=33.78 E-value=76 Score=33.00 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=78.6
Q ss_pred HHHHhCCCCCCCceEEEEEeccccccCHHHHHHHH------HHHhHc-----CcEEEEEecCCChhH--HHHHHHHHHHh
Q 011163 295 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV------RGAKMR-----GIQFVFTGTNKLPSA--SRALVSFQEEL 361 (492)
Q Consensus 295 ~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~------~~l~~~-----~~~lvivG~g~~~~~--~~~l~~~~~~~ 361 (492)
+.+..|...++....=+-+-|+.++|. .|+..+ .++++. --+.+++|+..-+.| ...+.+++...
T Consensus 551 le~e~~v~inp~smFDiqVKRIHEYKR--QllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V 628 (843)
T KOG2099|consen 551 LEKEYGVKINPSSMFDIQVKRIHEYKR--QLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAV 628 (843)
T ss_pred HHHHhCcccCcchhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHH
Confidence 344566554444333356778999887 444443 444432 136778883222222 23344443221
Q ss_pred ----C-----C--CeEEEEeccCHHHHHHHHhcCCEE--EECCCCCCCchHHHHHhhcCCceEEEecCCCccccccc
Q 011163 362 ----K-----D--GIVIFVDSYDDALLHLIFSGSDII--LCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 425 (492)
Q Consensus 362 ----~-----~--~~v~~~~~~~~~~~~~~~~~adi~--v~pS~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v~ 425 (492)
+ + -+|+|+..|.-.....++-++|+- +.+.-.|++|..-|.-|..|+..|.|-. |+-.|+-+
T Consensus 629 ~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlD--GANVEm~e 703 (843)
T KOG2099|consen 629 ADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLD--GANVEMAE 703 (843)
T ss_pred HHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEeccc--ccchHHHH
Confidence 1 0 367888777666666778888884 4344579999999999999999999988 88777644
No 335
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=33.59 E-value=76 Score=28.36 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=31.3
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHH-CCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~-~Gh~V~vi~~~ 51 (492)
|||++|.. .+ .|-+......+++++.+ .|++|.++...
T Consensus 2 ~kilIvy~--S~---~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYY--SM---YGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEc--CC---CCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 68988874 33 47799999999999998 99999998753
No 336
>PLN02686 cinnamoyl-CoA reductase
Probab=33.23 E-value=81 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=20.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+-.=..+++.|.++||+|.++..
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 56666667788999999999987654
No 337
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=33.09 E-value=51 Score=32.01 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+-.-..+++.|.+.|++|.++..
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 7 GGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEec
Confidence 44444446677889999999998753
No 338
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=32.94 E-value=88 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=30.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHC-CCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~-Gh~V~vi~~ 50 (492)
|||++|.. +..|-++.....+++++.+. |++|.++-.
T Consensus 1 ~kilIiY~-----S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYY-----SMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEe-----CCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 58888775 23599999999999999886 999988764
No 339
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=3.8e+02 Score=24.34 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=31.9
Q ss_pred CceEEEEEec-cccccCHHHHHHHHHHHhHcCc--EEEEEecCCChhHHHHHHHHHHHh
Q 011163 306 STIVVGCIFS-DVSDVFLENLKAVVRGAKMRGI--QFVFTGTNKLPSASRALVSFQEEL 361 (492)
Q Consensus 306 ~~~~i~~~gr-l~~~Kg~~~li~a~~~l~~~~~--~lvivG~g~~~~~~~~l~~~~~~~ 361 (492)
+..+++|+|. +...+. .|++...+|++.++ .++..|.-. ...+.+.+++..+
T Consensus 107 ~~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~~--~~~e~l~~fida~ 161 (259)
T KOG2884|consen 107 KQRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEAE--NNTEKLFEFIDAL 161 (259)
T ss_pred ceEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEecccc--ccHHHHHHHHHHh
Confidence 4567889997 444444 78888888887655 455556332 2235555555554
No 340
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.75 E-value=2.6e+02 Score=28.02 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHh--cCCEEEECCCC-CCCchHHHHHhhcCCceEEEe
Q 011163 378 HLIFS--GSDIILCHSFH-DPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 378 ~~~~~--~adi~v~pS~~-E~~glv~lEAma~G~PvV~~~ 414 (492)
.++.+ .+|+++...-- .+. ...++|+..|+++...+
T Consensus 84 ~~l~~~~~vD~Vv~Ai~G~aGl-~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 84 CELAALPEADVVVAAIVGAAGL-LPTLAAIRAGKRIALAN 122 (385)
T ss_pred HHHhcCCCCCEEEEeCcCcccH-HHHHHHHHCCCcEEEeC
Confidence 34444 46888888763 333 45789999999766644
No 341
>PRK07102 short chain dehydrogenase; Provisional
Probab=32.47 E-value=64 Score=29.50 Aligned_cols=26 Identities=4% Similarity=0.003 Sum_probs=18.9
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.+-.-..+++.|.++|++|.++...
T Consensus 9 as~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 9 ATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 33334467888999999998887653
No 342
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=32.47 E-value=36 Score=34.04 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.8
Q ss_pred HhHHHHHHHHCCCeEEEEeec
Q 011163 31 VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 31 ~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+..|+++|.++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 467999999999999999974
No 343
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=32.42 E-value=92 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+|+.|+.. +-.|-.+.+..|+..|.++|++|.++-+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 788887752 23678888999999999999999999653
No 344
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.24 E-value=78 Score=30.52 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.+|||+++. .|.+-..++..|.+.||+|.++...
T Consensus 3 ~~m~I~iiG-----------~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILG-----------AGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEEC-----------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468998864 3455567888899999999888754
No 345
>PRK08177 short chain dehydrogenase; Provisional
Probab=31.96 E-value=73 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=23.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.++|+- ..||+|. .+++.|.++|++|.++...
T Consensus 1 ~k~vlItG------~sg~iG~---~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIG------ASRGLGL---GLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHhCCCEEEEEeCC
Confidence 45555553 2466664 5678899999999888754
No 346
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.72 E-value=58 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.054 Sum_probs=22.1
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|.+..-.+++..|.++|.+|+++....
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 345557889999999999999998753
No 347
>PLN03007 UDP-glucosyltransferase family protein
Probab=31.64 E-value=80 Score=32.76 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=29.9
Q ss_pred CCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 6 RNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 6 ~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
++++||+++.- | . -|==.=+.+|++.|+.+|++|+++++..
T Consensus 3 ~~~~hVvlvp~---p--a-~GHi~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 3 HEKLHILFFPF---M--A-HGHMIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred CCCcEEEEECC---C--c-cccHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 44568887652 3 2 2344457889999999999999999764
No 348
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.38 E-value=86 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.=..|++.|.++||+|.++...
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 555555567889999999999887754
No 349
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=31.36 E-value=1.1e+02 Score=26.12 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=39.7
Q ss_pred CCCCchHHHHHhhcCCc----eEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHH
Q 011163 393 HDPLLQVPLKALKYGAA----PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 453 (492)
Q Consensus 393 ~E~~glv~lEAma~G~P----vV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~ 453 (492)
..+.|+.++|++..-.+ +|.+.. |.+..-|+.-. -|.+-|+..|.|.+++..|+..-
T Consensus 64 ~~gsGL~~i~~lr~~~~d~rivvLTGy--~sIATAV~AvK--lGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 64 GDGSGLAVIEALRERRADMRIVVLTGY--ASIATAVEAVK--LGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred cCCCchHHHHHHHhcCCcceEEEEecc--hHHHHHHHHHH--hhhhhhcCCCCChHHHHHHHhhc
Confidence 34899999999865432 566655 66665554222 34556999999999998888764
No 350
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.34 E-value=3.5e+02 Score=25.09 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEE-EE-eccCHHHH----HHH-HhcCCEEEECC--
Q 011163 321 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI-FV-DSYDDALL----HLI-FSGSDIILCHS-- 391 (492)
Q Consensus 321 g~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~-~~-~~~~~~~~----~~~-~~~adi~v~pS-- 391 (492)
|.|++-+.++...+.+.++.++|.. ....++..+.+.+++ .-+|. .. |.+++++. ..+ -+.+|++++.=
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~-~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGK-PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCC-HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 7788888777776667889999843 223333334444555 23332 23 33433222 222 25678877642
Q ss_pred -CCCCCchHHHHHhhcCCceEEEecCCCcccccc
Q 011163 392 -FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFA 424 (492)
Q Consensus 392 -~~E~~glv~lEAma~G~PvV~~~~~~gg~~e~v 424 (492)
+.|-|..-..+-+ +.++ ...+ ||.-|+.
T Consensus 168 PkQE~~~~~~~~~~--~~~v-~~gv--Gg~fD~~ 196 (243)
T PRK03692 168 PKQEIFMRDCRLVY--PDAL-YMGV--GGTYDVF 196 (243)
T ss_pred cHHHHHHHHHHHhC--CCCE-EEEe--CeEEEEe
Confidence 3465543332222 3434 3346 8888875
No 351
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.03 E-value=63 Score=30.96 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=22.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+||+|=.=...+.+|.+.|++|.|+=-
T Consensus 6 tGGAGYIGSHtv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 6 TGGAGYIGSHTVRQLLKTGHEVVVLDN 32 (329)
T ss_pred ecCcchhHHHHHHHHHHCCCeEEEEec
Confidence 378887778889999999999998853
No 352
>PRK06953 short chain dehydrogenase; Provisional
Probab=31.00 E-value=61 Score=29.22 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=22.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.++|+- ..||++ ..+++.|.+.|++|.++...
T Consensus 1 ~~~vlvtG------~sg~iG---~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVG------ASRGIG---REFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEc------CCCchh---HHHHHHHHhCCCEEEEEECC
Confidence 55556553 235555 56777888999998887643
No 353
>PRK00170 azoreductase; Reviewed
Probab=30.95 E-value=93 Score=27.62 Aligned_cols=41 Identities=12% Similarity=-0.025 Sum_probs=27.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHC--CCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~--Gh~V~vi~~~ 51 (492)
|||++|.. +|....|=.......+.+++.+. ||+|.++-..
T Consensus 2 mkil~i~g--Spr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 2 SKVLVIKS--SILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CeEEEEec--CCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 79999987 44321133345666677788887 9999888653
No 354
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=30.92 E-value=6.1e+02 Score=26.15 Aligned_cols=114 Identities=15% Similarity=-0.023 Sum_probs=65.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhc--CCEEEECCC-CCCCchHHHHHhhc---CCceE
Q 011163 338 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG--SDIILCHSF-HDPLLQVPLKALKY---GAAPI 411 (492)
Q Consensus 338 ~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--adi~v~pS~-~E~~glv~lEAma~---G~PvV 411 (492)
+++++-+ +......+...-+..+ -+|... -+.++....++. .|++++=-+ -+.-|+.+++.+.. ++|||
T Consensus 6 ~iLvVDD--d~~ir~~l~~~L~~~G-~~v~~a--~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 6 RILVVDD--DPDIRELLEQALELAG-YEVVTA--ESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CEEEEeC--CHHHHHHHHHHHHHcC-CeEEEe--CCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEE
Confidence 4566653 3345555555444432 344432 233333333443 355554443 36778888877655 78998
Q ss_pred EEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHH
Q 011163 412 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS 459 (492)
Q Consensus 412 ~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~ 459 (492)
.-.. -|.+...|+... .|..-|+..|.+++.|...+.+.++....
T Consensus 81 ~~Tg-~g~i~~AV~A~k--~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 81 VMTG-HGDIDTAVEALR--LGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EEeC-CCCHHHHHHHHh--cCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 8764 133333354322 34556999999999999999998865443
No 355
>PRK10818 cell division inhibitor MinD; Provisional
Probab=30.81 E-value=79 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=27.1
Q ss_pred ceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEeecC
Q 011163 9 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|||+-|+. ..||+|+ .+.+|+.+|+++|.+|.++=.+.
T Consensus 2 ~kviav~s------~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTS------GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEe------CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 46655554 2477775 55679999999999998886543
No 356
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=30.67 E-value=4.6e+02 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=22.9
Q ss_pred cCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 383 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 383 ~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.-|++++...... -.++.||...|.|+|+--.
T Consensus 157 ~Pd~iii~d~~~~-~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 157 LPDALFVVDPNKE-HIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred CCCEEEEeCCCcc-HHHHHHHHHhCCCEEEEee
Confidence 4577776665322 2678999999999998543
No 357
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=30.53 E-value=3.8e+02 Score=25.42 Aligned_cols=93 Identities=8% Similarity=-0.011 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHcCcEE-EEEecCCC--hhHHHHHHHHHHHhCCCeEEEEeccCHH----HHHHHHhcCCEEEECCC--
Q 011163 322 LENLKAVVRGAKMRGIQF-VFTGTNKL--PSASRALVSFQEELKDGIVIFVDSYDDA----LLHLIFSGSDIILCHSF-- 392 (492)
Q Consensus 322 ~~~li~a~~~l~~~~~~l-vivG~g~~--~~~~~~l~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~adi~v~pS~-- 392 (492)
+...++.+.++...--++ ++..+... ....+.+++.+++++ -.+....--+.+ .+..+-...|+++++..
T Consensus 117 ~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g-~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~ 195 (294)
T PF04392_consen 117 IEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLG-IELVEIPVPSSEDLEQALEALAEKVDALYLLPDNL 195 (294)
T ss_dssp HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT--EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HH
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcC-CEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcc
Confidence 444566666664221245 34442211 133456666666664 233322222222 22334456788777753
Q ss_pred -CCCCchHHHHHhhcCCceEEEec
Q 011163 393 -HDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 393 -~E~~glv~lEAma~G~PvV~~~~ 415 (492)
...+......+..+++|++++..
T Consensus 196 ~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 196 VDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp HHHTHHHHHHHCCCTT--EEESSH
T ss_pred hHhHHHHHHHHHHhcCCCEEECCH
Confidence 34445556677889999988653
No 358
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.24 E-value=5.6e+02 Score=25.46 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCCChhHHHHHHHHHH----------
Q 011163 290 VCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQE---------- 359 (492)
Q Consensus 290 ~~~~~~~~~lg~~~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~~~~~~~~l~~~~~---------- 359 (492)
..+..+.+++|++..++..++...+- +.-.+..|+++++... ..+.+++-. |.- ...++....
T Consensus 165 ~~~~~~~~~lg~~~~~~~~~vSLF~Y--e~~al~~ll~~~~~~~-~pv~lLvp~-Gr~---~~~v~~~l~~~~~~~g~~~ 237 (371)
T TIGR03837 165 AAQRALLRRLGVGPEPDALLVSLFCY--ENAALPALLDALAQSG-SPVHLLVPE-GRA---LAAVAAWLGDALLAAGDVH 237 (371)
T ss_pred HHHHHHHHHcCCCCCCCCeEEEEEec--CChhHHHHHHHHHhCC-CCeEEEecC-Ccc---HHHHHHHhCccccCCcccc
Confidence 35667888899963333333322222 2333778888887553 356776665 421 222222110
Q ss_pred HhCCCeEEEEeccCHHHHHHHHhcCCEEEECCCCCCCchHHHHHhhcCCceEEE
Q 011163 360 ELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV 413 (492)
Q Consensus 360 ~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~~E~~glv~lEAma~G~PvV~~ 413 (492)
+.+.-.++.+...+++....++-.||+-++ +-|- +.+-|+-.|+|.|=.
T Consensus 238 ~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfV--RGED---SFVRAqWAgkPfvWh 286 (371)
T TIGR03837 238 RRGALTVAVLPFVPQDDYDRLLWACDLNFV--RGED---SFVRAQWAGKPFVWH 286 (371)
T ss_pred ccCceEEEEcCCCChhhHHHHHHhChhcEe--echh---HHHHHHHcCCCceee
Confidence 111124555556688888899999999774 3333 467899999988753
No 359
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=30.21 E-value=1.1e+02 Score=22.98 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=26.0
Q ss_pred eEEEEeeccccccccC-cHHHHH-hHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIG-SLASYV-TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~G-G~~~~~-~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||+++|.. | |....+ ..+-+++.++|.++.+....
T Consensus 1 kIlvvC~~-------Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGS-------GIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESS-------SSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCC-------hHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 78898862 2 455555 67888899999888887755
No 360
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=30.20 E-value=1e+02 Score=27.15 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=25.8
Q ss_pred ceEEEEeeccccccccCcHH-HHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~-~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+||++..+ |+++ ..+.++.+.|.+.|++|.|+...
T Consensus 2 k~Ill~vt--------Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVS--------GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEe--------ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46766654 4443 34678999999999999988754
No 361
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.97 E-value=83 Score=27.57 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=19.5
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+ +...+++.|.++|++|.+++.
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEEC
Confidence 4554 446699999999999988764
No 362
>PRK06101 short chain dehydrogenase; Provisional
Probab=29.84 E-value=78 Score=28.97 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.2
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|+.++|+- .+||+| .++++.|.++|++|.++..
T Consensus 1 ~~~vlItG------as~giG---~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITG------ATSGIG---KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEc------CCcHHH---HHHHHHHHhCCCEEEEEEC
Confidence 45555553 346666 6678888999999888764
No 363
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=29.74 E-value=3.3e+02 Score=26.24 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccCHHHH--HHHHhcCCEEEECCCCCCCchHHHHHhhcCC
Q 011163 351 SRALVSFQEELKDGIVIFVDSYDDALL--HLIFSGSDIILCHSFHDPLLQVPLKALKYGA 408 (492)
Q Consensus 351 ~~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~adi~v~pS~~E~~glv~lEAma~G~ 408 (492)
.+.+.-.++++....+...|+++.|.+ ...+...|++| +.|--.|+..+.++.++.
T Consensus 199 ~~~I~PAI~~~~~~gi~v~GP~paDt~F~~~~~~~fD~vv--aMYHDQGlip~K~l~f~~ 256 (298)
T PF04166_consen 199 IEIIIPAIEEARAEGIDVFGPYPADTVFGKANRGKFDAVV--AMYHDQGLIPFKLLGFDE 256 (298)
T ss_dssp HHTHHHHHHHHHHTTHEEEEEE-HHHHTSHHHHTT-SEEE--ESSHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCCCceECCCccHHhhhcchhccCCEEE--EeecccCccceeeccccc
Confidence 333433333332245666788887765 45567789999 445467888999987754
No 364
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.52 E-value=5.5e+02 Score=25.18 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=60.6
Q ss_pred EEEEeccccccCHHHHHHHHHHHhHcCcEEEEEec-----------CCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHH
Q 011163 310 VGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGT-----------NKLPSASRALVSFQEELKDGIVIFVDSYDDALLH 378 (492)
Q Consensus 310 i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~-----------g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 378 (492)
+...+.+.. -+.+++.++++++...+++..|. |...+--+.+++..++.+ --.+...++.+.+.
T Consensus 97 IAGPCsiEs---~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~G--l~v~tev~d~~~~~ 171 (335)
T PRK08673 97 IAGPCSVES---EEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETG--LPIVTEVMDPRDVE 171 (335)
T ss_pred EEecCccCC---HHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcC--CcEEEeeCCHHHHH
Confidence 334444544 44688888887765555443221 100111235555556653 22334566777777
Q ss_pred HHHhcCCEEEECCC-CCCCchHHHHHhhcCCceEEEec
Q 011163 379 LIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 379 ~~~~~adi~v~pS~-~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.+...+|++-.+|+ ..++.+ +-++...|+||+.++-
T Consensus 172 ~l~~~vd~lqIgAr~~~N~~L-L~~va~~~kPViLk~G 208 (335)
T PRK08673 172 LVAEYVDILQIGARNMQNFDL-LKEVGKTNKPVLLKRG 208 (335)
T ss_pred HHHHhCCeEEECcccccCHHH-HHHHHcCCCcEEEeCC
Confidence 77677999999998 677775 3456678999998873
No 365
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=29.51 E-value=95 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=33.2
Q ss_pred CccccCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 1 MEKWLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 1 ~~~~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
|+|-. .+.||+++- +... |==.=+.+|++.|+.+|+.|+++++...
T Consensus 1 ~~~~~-~~~HVvlvP-----fpaq-GHi~P~l~LAk~La~~G~~VT~v~T~~n 46 (451)
T PLN02410 1 MEEKP-ARRRVVLVP-----VPAQ-GHISPMMQLAKTLHLKGFSITIAQTKFN 46 (451)
T ss_pred CCcCC-CCCEEEEEC-----CCcc-ccHHHHHHHHHHHHcCCCEEEEEeCccc
Confidence 77666 567887743 3333 3444567899999999999999987643
No 366
>PRK06180 short chain dehydrogenase; Provisional
Probab=29.38 E-value=83 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.6
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.++...
T Consensus 13 sggiG---~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 13 SSGFG---RALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CChHH---HHHHHHHHhCcCEEEEEeCC
Confidence 46666 55677889999999887653
No 367
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.32 E-value=78 Score=29.28 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=23.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.++|+- .+||+| ..+++.|.++|++|.++...
T Consensus 1 mk~vlItG------asg~iG---~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 1 MKSIFITG------AASGIG---RATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred CcEEEEeC------CCchHH---HHHHHHHHHCCCeEEEEeCC
Confidence 55555552 235555 67778899999999888643
No 368
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=29.26 E-value=1.3e+02 Score=28.38 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+..|++.|+.. - ..-|-.+.+.+|+.+|++.|++|.+|=.
T Consensus 101 ~~~~vi~vts~-~---~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSA-K---SGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECC-C---CCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 34566666652 1 1245667789999999999999998844
No 369
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=28.94 E-value=69 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred cCcHHHH--HhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASY--VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~--~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+|+. ..+|+..|++.|++|.++=.+
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3777655 578999999999999998643
No 370
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=28.90 E-value=96 Score=29.90 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=19.8
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.+-.-..+++.|.+.||+|.++...
T Consensus 12 G~~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 12 GASGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence 445555567888899999999876543
No 371
>PRK04155 chaperone protein HchA; Provisional
Probab=28.74 E-value=1.3e+02 Score=28.69 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=29.0
Q ss_pred CceEEEEeecccccc-------ccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 8 GFHIIHICTEMDPLV-------SIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~-------~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
.+|||+|++...-.. ..|=-..=+..-...|.+.|++|+++++..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 369999998653221 122222333344567888999999999854
No 372
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=28.51 E-value=92 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=20.3
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.=..+++.|.++|++|.+++..
T Consensus 67 GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 67 GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 455555567778899999999988754
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=28.50 E-value=74 Score=31.10 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=24.1
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.|||++|.. |.+| ..++..|.+.||+|+++..
T Consensus 2 ~mkI~IiG~--------G~mG---~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLGA--------GSIG---CYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEEECC--------CHHH---HHHHHHHHhcCCcEEEEec
Confidence 378988654 5555 4566778999999999875
No 374
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=28.46 E-value=1.2e+02 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred CcHH-HHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLA-SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~-~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||++ ...-++.+.|.+.|++|.|+...
T Consensus 8 Gsiaa~ka~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 8 GASGVIYGIRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 6644 45678999999999999999764
No 375
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=28.38 E-value=78 Score=29.09 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=18.8
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+||+|. .+++.|.++|++|.++...
T Consensus 9 sg~iG~---~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 9 TAGFGE---CITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CchHHH---HHHHHHHHCCCEEEEEECC
Confidence 466664 5678899999999887653
No 376
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=28.38 E-value=1.1e+02 Score=29.72 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=28.0
Q ss_pred ccCcHHH--HHhHHHHHHHHCCCeEEEEeecCCCC
Q 011163 23 SIGSLAS--YVTGLSGALQRKGHLVEVILPKYACM 55 (492)
Q Consensus 23 ~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~~~~ 55 (492)
..||+|+ ++..|++.|.++|.++.|++..|+..
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 71 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSK 71 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 4577775 68889999999999999999988753
No 377
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=28.32 E-value=1.5e+02 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=28.6
Q ss_pred hcCCEEEECCCCCCCchHHHHHhhcCCceEEEec
Q 011163 382 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 382 ~~adi~v~pS~~E~~glv~lEAma~G~PvV~~~~ 415 (492)
..+|+++-.|..+..--.+.+|+..|+|+|+..+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 5689999998776666678899999999998776
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.29 E-value=57 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.4
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|-|......++.|.+.|++|+|+.|.
T Consensus 20 GGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 20 GGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 44566788999999999999999754
No 379
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=28.24 E-value=77 Score=30.40 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=26.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++++.+-. -.....+.+++.++||+|.++.+.
T Consensus 1 m~~~i~~~~~s--------~~s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCc--------chhHHHHHHHHHHcCCeEEEEehH
Confidence 78998886411 123468899999999999999764
No 380
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=28.23 E-value=94 Score=30.52 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.1
Q ss_pred ccCcHHH--HHhHHHHHHHHCCCeEEEEeecCCCC
Q 011163 23 SIGSLAS--YVTGLSGALQRKGHLVEVILPKYACM 55 (492)
Q Consensus 23 ~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~~~~~~ 55 (492)
..||+|+ .+.-|++.|.++|+++.|++..|+..
T Consensus 65 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 65 TVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred cCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 4677775 68889999999999999999988753
No 381
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=28.09 E-value=1.3e+02 Score=25.18 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=22.3
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
..|....+.+||..|++.|++|.++-...
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 36788899999999999999988876543
No 382
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=28.05 E-value=1.3e+02 Score=24.67 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=27.5
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeE-EEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLV-EVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V-~vi~~~ 51 (492)
|++++... .|+ .+-......++++++.+.||+| .|+-..
T Consensus 1 ~~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 1 KYTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred CEEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 45555553 564 2446778899999999999995 776643
No 383
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.00 E-value=5e+02 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred CCEEEEC-CCCCCCchHHHHHhhcCCceEEEe
Q 011163 384 SDIILCH-SFHDPLLQVPLKALKYGAAPIAVT 414 (492)
Q Consensus 384 adi~v~p-S~~E~~glv~lEAma~G~PvV~~~ 414 (492)
=|+.++- ...|- +++.||--.|.||||--
T Consensus 157 Pd~l~ViDp~~e~--iAv~EA~klgIPVvAlv 186 (252)
T COG0052 157 PDVLFVIDPRKEK--IAVKEANKLGIPVVALV 186 (252)
T ss_pred CCEEEEeCCcHhH--HHHHHHHHcCCCEEEEe
Confidence 4554444 34565 67899999999999854
No 384
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=27.75 E-value=83 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=27.5
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
.+|-++.+...++++|.++|++|.++.....
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~ 36 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDDF 36 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGGS
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 4699999999999999999999999987543
No 385
>PRK07236 hypothetical protein; Provisional
Probab=27.66 E-value=90 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.112 Sum_probs=25.3
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.+++++|++|.. |+. =..++..|.+.|++|+|+=.
T Consensus 3 ~~~~~~ViIVGa---------G~a--Gl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 3 HMSGPRAVVIGG---------SLG--GLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCeEEEECC---------CHH--HHHHHHHHHhCCCCEEEEec
Confidence 345688988763 332 45577889999999999964
No 386
>PRK11670 antiporter inner membrane protein; Provisional
Probab=27.54 E-value=94 Score=30.95 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=26.6
Q ss_pred ceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+||+.|+. ..||+|+ .+.+|+.+|+++|++|-++=.
T Consensus 107 ~~vIaV~S------~KGGVGKTT~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 107 KNIIAVSS------GKGGVGKSSTAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred CEEEEEeC------CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 45655554 2477775 456799999999999988853
No 387
>PRK05993 short chain dehydrogenase; Provisional
Probab=27.50 E-value=99 Score=29.06 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=23.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+|.++|+- ..||+| ..+++.|.++|++|.++...
T Consensus 4 ~k~vlItG------asggiG---~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITG------CSSGIG---AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 45556663 347777 45678899999999887653
No 388
>PRK07775 short chain dehydrogenase; Provisional
Probab=27.46 E-value=1e+02 Score=28.83 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=24.6
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+.+|.++|+- ..||+| ..+++.|.++|++|.++..
T Consensus 8 ~~~~~vlVtG------a~g~iG---~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 8 PDRRPALVAG------ASSGIG---AATAIELAAAGFPVALGAR 42 (274)
T ss_pred CCCCEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 3456666663 246666 5688899999999877764
No 389
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=27.45 E-value=92 Score=32.20 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
.|=-..+.++++.|+++||+|+++++...
T Consensus 16 ~sH~~~~~~la~~L~~~gh~vt~~~~~~~ 44 (496)
T KOG1192|consen 16 QSHLNPMLQLAKRLAERGHNVTVVTPSFN 44 (496)
T ss_pred ccHHHHHHHHHHHHHHcCCceEEEEeech
Confidence 67778899999999999999999998654
No 390
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.43 E-value=98 Score=28.04 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=18.2
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.++...
T Consensus 14 sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 14 SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 35555 56778888999998777654
No 391
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=27.36 E-value=1.2e+02 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+-|+.. +--|-.+.+..|...|.++|++|.+|=.
T Consensus 1 MkVi~IvG~-----sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-----KDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-----CCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 788888762 2368899999999999999999999854
No 392
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=27.32 E-value=1.1e+02 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCe
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHL 44 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~ 44 (492)
|||+++.+ |.+.....+..++.+.+++
T Consensus 1 mrI~~~~S---------g~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGS---------GSGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEES---------SSSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEc---------CCCHHHHHHHHHHHhCCCC
Confidence 89999875 2336677888899999998
No 393
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.13 E-value=1e+02 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||+| ..|++.|.++||+|.+++..
T Consensus 16 g~iG---~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 16 RGLG---RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred chHH---HHHHHHHHHCCCeEEEEeCC
Confidence 5555 66778899999998776543
No 394
>PLN00198 anthocyanidin reductase; Provisional
Probab=26.76 E-value=1.2e+02 Score=29.35 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.=..|+++|.++|++|.++...
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 555555567889999999999877644
No 395
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=26.76 E-value=1.1e+02 Score=28.33 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
++|+|+++.. +|++| ..+++.|.+.||+|.+++..
T Consensus 16 ~~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 16 KTKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cCCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecC
Confidence 3467766432 35555 56667788899999887643
No 396
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.69 E-value=2.1e+02 Score=29.03 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=49.0
Q ss_pred ceEEEEEeccccccCHHHHHHHHHHHhHc-CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCC
Q 011163 307 TIVVGCIFSDVSDVFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 385 (492)
Q Consensus 307 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~-~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 385 (492)
..+++|.-......-...+++|++...+. ++.++|+|.||. +.++ + ..|++|.+...+.+|.
T Consensus 163 ~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG-SiED--------L--------W~FNdE~vaRAi~~s~ 225 (440)
T COG1570 163 VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG-SIED--------L--------WAFNDEIVARAIAASR 225 (440)
T ss_pred CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc-hHHH--------H--------hccChHHHHHHHHhCC
Confidence 56888888888888899999999988864 588888886652 3322 2 2566666655555555
Q ss_pred EEEECCC-CCC
Q 011163 386 IILCHSF-HDP 395 (492)
Q Consensus 386 i~v~pS~-~E~ 395 (492)
+-|.... +|+
T Consensus 226 iPvISAVGHEt 236 (440)
T COG1570 226 IPVISAVGHET 236 (440)
T ss_pred CCeEeecccCC
Confidence 5555544 443
No 397
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=26.63 E-value=93 Score=29.33 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=20.9
Q ss_pred CcHHHH--HhHHHHHHHH-CCCeEEEEe
Q 011163 25 GSLASY--VTGLSGALQR-KGHLVEVIL 49 (492)
Q Consensus 25 GG~~~~--~~~l~~~L~~-~Gh~V~vi~ 49 (492)
||+|+. +.+|+.+|++ +|++|.++=
T Consensus 11 GGVGKTT~a~nLA~~La~~~G~rvLliD 38 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMAYFHDKKVFIHG 38 (275)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCeEEEec
Confidence 888875 5789999998 699998874
No 398
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=26.58 E-value=2.2e+02 Score=25.09 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=42.3
Q ss_pred CEEEECCC-CCCCchHHHHHhh--cCCceEEEecCCCcccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHH
Q 011163 385 DIILCHSF-HDPLLQVPLKALK--YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWK 461 (492)
Q Consensus 385 di~v~pS~-~E~~glv~lEAma--~G~PvV~~~~~~gg~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~ 461 (492)
++.++... +-+|-++.+|+.- .|+|||+. +....+.+.+..|++.-++|.+.+.
T Consensus 71 rvVlLdGIt~aGFNivDi~~l~~~tg~PVi~V-----------------------~~k~P~~e~i~~Al~k~f~d~e~R~ 127 (185)
T COG1628 71 RVVLLDGITFAGFNIVDIEALYKETGLPVIVV-----------------------YRKKPDIERIESALRKHFDDAEERI 127 (185)
T ss_pred cEEEECCeeeccceEecHHHHHHhhCCcEEEE-----------------------EecCCCHHHHHHHHHHhCCCHHHHH
Confidence 55566655 5688888888875 78888873 2224566788889998888888776
Q ss_pred HHHHHH
Q 011163 462 RKIKDA 467 (492)
Q Consensus 462 ~~~~~a 467 (492)
+..+.+
T Consensus 128 rii~~~ 133 (185)
T COG1628 128 RIIESA 133 (185)
T ss_pred HHHHhC
Confidence 665554
No 399
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=26.49 E-value=1.1e+02 Score=28.46 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.3
Q ss_pred ceEEEEeeccccccccCcHHHHH--hHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~--~~l~~~L~~~Gh~V~vi~~~ 51 (492)
++|.++.. ..||+|+.. ..|+..|+++|.+|.++-.+
T Consensus 2 ~~i~~i~~------~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D 40 (241)
T PRK13886 2 AKIHMVLQ------GKGGVGKSFIAATIAQYKASKGQKPLCIDTD 40 (241)
T ss_pred CeEEEEec------CCCCCcHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 46766665 248887665 67889999999999888544
No 400
>PRK12320 hypothetical protein; Provisional
Probab=26.44 E-value=75 Score=34.58 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.|-.=..|++.|.++||+|.++..
T Consensus 7 GAaGFIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 7 DATGAVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 66666667788899999999998874
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=26.43 E-value=99 Score=28.54 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=24.1
Q ss_pred ceEEEEeeccccccccCcHHHHHh--HHHHHHHHCC-CeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVT--GLSGALQRKG-HLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~--~l~~~L~~~G-h~V~vi~~~ 51 (492)
|||++... ||+|..+. -|+.+|.++| ++|.++=.+
T Consensus 1 mkIaI~GK--------GG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 1 MKIAITGK--------GGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred CeEEEecC--------CCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 78877443 77776543 3477887776 999888644
No 402
>PRK08265 short chain dehydrogenase; Provisional
Probab=26.42 E-value=1.1e+02 Score=28.43 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=22.8
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+| ..+++.|.+.|++|.++..+
T Consensus 7 k~vlItG------as~gIG---~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 7 KVAIVTG------GATLIG---AAVARALVAAGARVAIVDID 39 (261)
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5556553 235555 67788899999998877643
No 403
>PLN02208 glycosyltransferase family protein
Probab=26.32 E-value=1.2e+02 Score=31.16 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+++||+++- +.. -|=-.=+.+|++.|+.+|++|+++++.
T Consensus 3 ~~~hvv~~P-----~pa-qGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 3 PKFHAFMFP-----WFA-FGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCCEEEEec-----Ccc-ccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 456776643 323 345556788999999999999999964
No 404
>PRK09273 hypothetical protein; Provisional
Probab=26.20 E-value=1.2e+02 Score=27.25 Aligned_cols=39 Identities=21% Similarity=0.039 Sum_probs=29.4
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+++... +..+==+.....|...|.+.||+|.=+.+.
T Consensus 1 mkiali~e~----sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINEN----SQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeeccc----chhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 899999863 222334567788999999999999877764
No 405
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=26.19 E-value=1e+02 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=28.7
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
.+||++|.+ +-+.++..+..++.+.|.++.+++|..
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 467877652 336788999999999999999999864
No 406
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.08 E-value=1.1e+02 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred CcHHHHHhHHHHHHHHC--CCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRK--GHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~--Gh~V~vi~~~ 51 (492)
|+.-..+.+|.+.|.+. |++|.|+...
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~ 38 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSR 38 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEECh
Confidence 44557899999999999 9999999854
No 407
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=26.03 E-value=91 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=19.4
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.+-.-..+++.|.++|++|.+++..
T Consensus 8 Ga~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 8 GAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 333334467889999999998887654
No 408
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.93 E-value=4.2e+02 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=18.7
Q ss_pred HhcCCEEEECCCCCCCc-hHHHHHhhcCCceEEEec
Q 011163 381 FSGSDIILCHSFHDPLL-QVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 381 ~~~adi~v~pS~~E~~g-lv~lEAma~G~PvV~~~~ 415 (492)
+..+|+++.....+..- .+...|-. +.++-+.+.
T Consensus 68 l~~a~lViaaT~d~e~N~~i~~~a~~-~~~vn~~d~ 102 (157)
T PRK06719 68 IKDAHLIYAATNQHAVNMMVKQAAHD-FQWVNVVSD 102 (157)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHH-CCcEEECCC
Confidence 57889988886543322 33334434 445555444
No 409
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.86 E-value=2e+02 Score=27.54 Aligned_cols=40 Identities=3% Similarity=-0.007 Sum_probs=27.0
Q ss_pred cCCCceEEEEeeccccccccCcHHHHHhHHHHHHHH--CCCeEEEEeecCC
Q 011163 5 LRNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR--KGHLVEVILPKYA 53 (492)
Q Consensus 5 ~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~--~Gh~V~vi~~~~~ 53 (492)
..++|||+++.+ |+ ++-...|..+... .+++|.++..+.+
T Consensus 86 ~~~~~ri~vl~S--------g~-gsnl~al~~~~~~~~~~~~i~~visn~~ 127 (286)
T PRK06027 86 SAERKRVVILVS--------KE-DHCLGDLLWRWRSGELPVEIAAVISNHD 127 (286)
T ss_pred cccCcEEEEEEc--------CC-CCCHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 446799999875 22 5557777777665 3678887776544
No 410
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=25.79 E-value=4.8e+02 Score=23.29 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=48.1
Q ss_pred cCcEEEEEecCCC--hhHHHHHHHHHHHhCCCeEEEEec--cCHHHHHHHHhcCCEEEECC--------CC-CC-CchHH
Q 011163 335 RGIQFVFTGTNKL--PSASRALVSFQEELKDGIVIFVDS--YDDALLHLIFSGSDIILCHS--------FH-DP-LLQVP 400 (492)
Q Consensus 335 ~~~~lvivG~g~~--~~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~adi~v~pS--------~~-E~-~glv~ 400 (492)
.+.+++++..... ..+.+..++..++++...+.+... .+.++..+.+..||+++++- .+ +. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 3567777764321 233445555555554333332211 12345557788899988874 12 22 23346
Q ss_pred HHHhhcCCceEEEecCCCcc
Q 011163 401 LKALKYGAAPIAVTSSDIEF 420 (492)
Q Consensus 401 lEAma~G~PvV~~~~~~gg~ 420 (492)
.+....|+|++.++. |.+
T Consensus 108 ~~~~~~G~v~~G~SA--GA~ 125 (210)
T cd03129 108 LKRVARGVVIGGTSA--GAA 125 (210)
T ss_pred HHHHHcCCeEEEcCH--HHH
Confidence 788888999988877 544
No 411
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=25.57 E-value=1.4e+02 Score=28.64 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=30.2
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+++.-...+. .--.=.....+.++|.+.||+|.++..
T Consensus 1 ~~v~v~~gg~s~e--~~~sl~s~~~i~~al~~~g~~~~~i~~ 40 (299)
T PRK14571 1 MRVALLMGGVSRE--REISLRSGERVKKALEKLGYEVTVFDV 40 (299)
T ss_pred CeEEEEeCCCCCC--ccchHHHHHHHHHHHHHcCCeEEEEcc
Confidence 7899998765553 122336678899999999999998864
No 412
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.49 E-value=1.1e+02 Score=27.88 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=17.8
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.||+| ..+++.|.++|++|.++..
T Consensus 15 sg~iG---~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 15 TSGIG---LETARQFLAEGARVAITGR 38 (249)
T ss_pred CchHH---HHHHHHHHHCCCEEEEecC
Confidence 35555 6677889999999877654
No 413
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.47 E-value=1.1e+02 Score=28.06 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=23.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+|.++|+- ..||++ ..+++.|.++|++|.++...
T Consensus 7 ~~~vlItG------asg~iG---~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 7 GKTAVVTG------AASGIG---KEIALELARAGAAVAIADLN 40 (262)
T ss_pred CCEEEEEC------CCChHH---HHHHHHHHHCCCeEEEEeCC
Confidence 35556663 235555 55788899999998877554
No 414
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=25.42 E-value=90 Score=29.70 Aligned_cols=29 Identities=21% Similarity=0.064 Sum_probs=22.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
||.|-.=..|+++|.++||+|..+.....
T Consensus 7 G~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 7 GGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred cCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 44555558899999999999999986533
No 415
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.39 E-value=5e+02 Score=23.33 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=53.0
Q ss_pred ccCHHHHHHHHHHHhHcCcEEEEEecCCC--hhHHHHHHHHHHHh-CCCeEEEEeccCHHHHHHHHhcCCEEEECCC---
Q 011163 319 DVFLENLKAVVRGAKMRGIQFVFTGTNKL--PSASRALVSFQEEL-KDGIVIFVDSYDDALLHLIFSGSDIILCHSF--- 392 (492)
Q Consensus 319 ~Kg~~~li~a~~~l~~~~~~lvivG~g~~--~~~~~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~--- 392 (492)
..+.+.|.+.+..+.+.+.+++++..... +++...+++.-+++ +. .+..+...+.++..+.+..||++++|--
T Consensus 14 ~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~-~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~ 92 (212)
T cd03146 14 AHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGV-EVSHLHLFDTEDPLDALLEADVIYVGGGNTF 92 (212)
T ss_pred ccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCc-EEEEEeccCcccHHHHHhcCCEEEECCchHH
Confidence 33555666666666545678999885432 23333344444444 32 2332222223333466789999999951
Q ss_pred -----CCCCchH--HHHHhhcCCceEEEec
Q 011163 393 -----HDPLLQV--PLKALKYGAAPIAVTS 415 (492)
Q Consensus 393 -----~E~~glv--~lEAma~G~PvV~~~~ 415 (492)
+...|+- +-++...|+|++.+..
T Consensus 93 ~~~~~l~~~~l~~~l~~~~~~g~~i~G~SA 122 (212)
T cd03146 93 NLLAQWREHGLDAILKAALERGVVYIGWSA 122 (212)
T ss_pred HHHHHHHHcCHHHHHHHHHHCCCEEEEECH
Confidence 1222322 3345567999988876
No 416
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=25.37 E-value=53 Score=30.76 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=24.1
Q ss_pred ceEEEEeeccccccccCcHHHH--HhHHHHHHHHCCCeEEEEe
Q 011163 9 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~--~~~l~~~L~~~Gh~V~vi~ 49 (492)
||++-|.. .||+|+. +.+|+.+|++.| +|.++=
T Consensus 2 ~~~iav~~-------KGGvGKTT~a~nLA~~La~~G-rVLliD 36 (264)
T PRK13231 2 MKKIAIYG-------KGGIGKSTTVSNMAAAYSNDH-RVLVIG 36 (264)
T ss_pred ceEEEEEC-------CCCCcHHHHHHHHhcccCCCC-EEEEEe
Confidence 66655552 3888765 578999999999 887774
No 417
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.36 E-value=1.2e+02 Score=27.57 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=18.8
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.+-.-..+++.|.++|++|.++...
T Consensus 14 G~sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 14 GAGRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 334444466778889999998887643
No 418
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=25.36 E-value=1.1e+02 Score=29.47 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=23.5
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+|.++|+- ..||+| .+++++|.++|++|.++..
T Consensus 6 ~k~vlVTG------as~gIG---~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 6 KGTVIITG------ASSGVG---LYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCEEEEEc------CCChHH---HHHHHHHHHCCCEEEEEEC
Confidence 35556663 346777 5678899999999988764
No 419
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.98 E-value=1.7e+02 Score=26.05 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=26.4
Q ss_pred ceEEEEeeccccccccCcH-HHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~-~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+.|+.. |. .++. ........+.+.+.|++|.++-..
T Consensus 1 mkIl~I~GS--pr--~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGS--PR--FPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcC--CC--CCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 899999863 42 2443 445555666777799999988643
No 420
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=24.85 E-value=1.2e+02 Score=28.00 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.5
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+| ..+++.|.++|++|.++...
T Consensus 7 ~~vlItG------as~~iG---~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTG------AASGIG---EAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHcCCEEEEEcCC
Confidence 4555553 246666 57889999999999887643
No 421
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.85 E-value=1.3e+02 Score=30.99 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=27.3
Q ss_pred ceEEEEeeccccccccCcHHHH-HhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASY-VTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~-~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||++... ||+..| +.+|.+.|.+.|++|.|+...
T Consensus 71 k~IllgVt--------GsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 71 KRVTLIIG--------GGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred CEEEEEEc--------cHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 57777664 666654 678999999999999999754
No 422
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.75 E-value=1.1e+02 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.3
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.+-.-..+++.|.++|++|.++...
T Consensus 9 G~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 9 GGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 444444467788899999999887643
No 423
>PRK00211 sulfur relay protein TusC; Validated
Probab=24.74 E-value=1.5e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=28.1
Q ss_pred ceEEEEeeccccccccCc-HHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 9 FHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG-~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
|||++|... .|+ |+ .+.-..+++-+++..+++|.|+-...
T Consensus 2 ~ki~~i~~~-~Py---g~~~~~eaLd~ala~~a~~~~v~vff~~D 42 (119)
T PRK00211 2 KRIAFVFRQ-APH---GTASGREGLDALLATSAFTEDIGVFFIDD 42 (119)
T ss_pred ceEEEEecC-CCC---CCHHHHHHHHHHHHHhcccCCeeEEEEhh
Confidence 468888874 675 33 44445556888888889999987653
No 424
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=24.58 E-value=1.2e+02 Score=28.12 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.6
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+++|+- ..||+| ..+++.|.++|++|.++...
T Consensus 10 k~vlItG------~s~gIG---~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTG------GSSGIG---LAIVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5666663 346666 55678899999999887643
No 425
>PRK06179 short chain dehydrogenase; Provisional
Probab=24.56 E-value=1.2e+02 Score=28.28 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=19.4
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.+++..
T Consensus 13 sg~iG---~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 13 SSGIG---RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46666 57788899999999887754
No 426
>PRK08226 short chain dehydrogenase; Provisional
Probab=24.53 E-value=1.2e+02 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=18.5
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.++...
T Consensus 15 s~giG---~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 15 LQGIG---EGIARVFARHGANLILLDIS 39 (263)
T ss_pred CChHH---HHHHHHHHHCCCEEEEecCC
Confidence 35565 55788899999998877643
No 427
>PRK06398 aldose dehydrogenase; Validated
Probab=24.34 E-value=1.3e+02 Score=27.92 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=22.6
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|+++|+- ..||+|. .+++.|.+.|++|.++..
T Consensus 7 k~vlItG------as~gIG~---~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 7 KVAIVTG------GSQGIGK---AVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CEEEEEC------CCchHHH---HHHHHHHHCCCeEEEEeC
Confidence 5556563 3467764 577889999999987754
No 428
>PRK06194 hypothetical protein; Provisional
Probab=24.33 E-value=1.3e+02 Score=28.32 Aligned_cols=24 Identities=4% Similarity=-0.081 Sum_probs=18.2
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.||+| ..+++.|.++|++|.++..
T Consensus 15 sggIG---~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 15 ASGFG---LAFARIGAALGMKLVLADV 38 (287)
T ss_pred ccHHH---HHHHHHHHHCCCEEEEEeC
Confidence 35665 5678889999999977754
No 429
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=23.84 E-value=2.7e+02 Score=26.00 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=53.7
Q ss_pred cccCHHHHHHHHHHHhH--cCcEEEEEecCCChhHHHHHHHHHHHhCCCeE--EEEeccCHHHHHHHHhcCCEEEECCC-
Q 011163 318 SDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIV--IFVDSYDDALLHLIFSGSDIILCHSF- 392 (492)
Q Consensus 318 ~~Kg~~~li~a~~~l~~--~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~adi~v~pS~- 392 (492)
-.|=...|..|++-+.. .+-.++++|.. +.....+++.+...+..-| +|++|.--.....-+..=|++|+..-
T Consensus 51 L~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr--~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~ 128 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAAIENPADVVVVSSR--PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPR 128 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--HHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCC
Confidence 33445566666654442 35677888854 3455667777776642111 34544421112223344566666543
Q ss_pred CCCCchHHHHHhhcCCceEEEec
Q 011163 393 HDPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 393 ~E~~glv~lEAma~G~PvV~~~~ 415 (492)
.|. ..+.||...|.|+|+--.
T Consensus 129 ~d~--qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 129 TDH--QAIREASYVNIPVIALCD 149 (249)
T ss_pred cch--HHHHHHHHhCCCEEEEec
Confidence 343 568999999999998654
No 430
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.79 E-value=3e+02 Score=23.71 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHHHhHcCc-EEEEE-ecCCChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEEC
Q 011163 319 DVFLENLKAVVRGAKMRGI-QFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 390 (492)
Q Consensus 319 ~Kg~~~li~a~~~l~~~~~-~lviv-G~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~p 390 (492)
.-.+.+.++|++.+...++ .++++ |++ ++...+.++. +. +-+|..+| ...-....+.++||-|+.-
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~---DF~~Lv~~lr-e~-G~~V~v~g-~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDA---DFLPVINKAK-EN-GKETIVIG-AEPGFSTALQNSADIAIIL 155 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccH---hHHHHHHHHH-HC-CCEEEEEe-CCCCChHHHHHhcCeEEeC
Confidence 4457789999988743333 34444 433 4554444433 33 35777665 2322334677999988854
No 431
>PRK08264 short chain dehydrogenase; Validated
Probab=23.74 E-value=1.3e+02 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=19.1
Q ss_pred CcHHHHHhHHHHHHHHCCC-eEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGH-LVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh-~V~vi~~~ 51 (492)
||.+-.-..+++.|.++|+ +|.++...
T Consensus 13 Ggsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 13 GANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4444445677888999999 88777643
No 432
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=23.67 E-value=5.7e+02 Score=23.39 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=47.7
Q ss_pred HHhHcCcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEe-ccCHHHHHHHHhcCCEEEECCCCCC-CchHHHHHhhcCC
Q 011163 331 GAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD-SYDDALLHLIFSGSDIILCHSFHDP-LLQVPLKALKYGA 408 (492)
Q Consensus 331 ~l~~~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~adi~v~pS~~E~-~glv~lEAma~G~ 408 (492)
.|.+.+.++.++... ..+++++++.. +++.+.. .++++ .+..+++++...-.+. --.+.-+|-+.|.
T Consensus 43 ~Ll~~gA~VtVVap~----i~~el~~l~~~---~~i~~~~r~~~~~----dl~g~~LViaATdD~~vN~~I~~~a~~~~~ 111 (223)
T PRK05562 43 TFLKKGCYVYILSKK----FSKEFLDLKKY---GNLKLIKGNYDKE----FIKDKHLIVIATDDEKLNNKIRKHCDRLYK 111 (223)
T ss_pred HHHhCCCEEEEEcCC----CCHHHHHHHhC---CCEEEEeCCCChH----HhCCCcEEEECCCCHHHHHHHHHHHHHcCC
Confidence 344457888888732 34455555543 4566543 34433 3577888877765332 3344456667788
Q ss_pred ceEEEecCCCcccccc
Q 011163 409 APIAVTSSDIEFRHFA 424 (492)
Q Consensus 409 PvV~~~~~~gg~~e~v 424 (492)
++.+.+. ....+++
T Consensus 112 lvn~vd~--p~~~dFi 125 (223)
T PRK05562 112 LYIDCSD--YKKGLCI 125 (223)
T ss_pred eEEEcCC--cccCeEE
Confidence 8888776 5555553
No 433
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.52 E-value=1.8e+02 Score=22.43 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=23.6
Q ss_pred eEEEEeeccccccccCcHHHH---HhHHHHHHHHCCCeEEEEee
Q 011163 10 HIIHICTEMDPLVSIGSLASY---VTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~---~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||+.+|. .|+++. ...+-+.+.++|.++.+...
T Consensus 4 kILvvCg--------sG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 4 KIIVACG--------GAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred eEEEECC--------CchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 6999886 345433 34566778899999988873
No 434
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=23.50 E-value=1.4e+02 Score=27.52 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=22.0
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|.++|+- ..||+| ..++++|.+.|++|.++..
T Consensus 10 k~~lItG------as~giG---~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 10 KNILITG------SAQGIG---FLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHcCCEEEEEcC
Confidence 5556553 235555 6778889999999887653
No 435
>PLN02572 UDP-sulfoquinovose synthase
Probab=23.45 E-value=1e+02 Score=31.57 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.6
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEe
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVIL 49 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~ 49 (492)
||.|-.=..|++.|.++|++|.++-
T Consensus 54 GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 54 GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4444444677899999999998875
No 436
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.37 E-value=3.1e+02 Score=24.19 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=24.8
Q ss_pred hhhHHHHhhcCceeccCccchhhhhhcccCCCccHHHhhhcCCeeeecC
Q 011163 213 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPC 261 (492)
Q Consensus 213 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI~n 261 (492)
.+.+..++..|.|.+.|+..++.+.. .| ..++++.+..|
T Consensus 141 ~~~r~~l~~f~~i~aqs~~da~r~~~--lG--------~~~~~v~v~Gn 179 (186)
T PF04413_consen 141 FLFRPLLSRFDRILAQSEADAERFRK--LG--------APPERVHVTGN 179 (186)
T ss_dssp HHHHHHGGG-SEEEESSHHHHHHHHT--TT---------S--SEEE---
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH--cC--------CCcceEEEeCc
Confidence 46778888999999999988887654 33 24567877665
No 437
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=23.29 E-value=1e+02 Score=30.12 Aligned_cols=24 Identities=25% Similarity=-0.090 Sum_probs=18.7
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.|++| ..+++.|.++||+|.++..
T Consensus 13 tG~IG---~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 13 TGFKG---SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CChhH---HHHHHHHHHCCCEEEEEeC
Confidence 35555 6788999999999987764
No 438
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=23.07 E-value=4.8e+02 Score=22.25 Aligned_cols=76 Identities=9% Similarity=0.198 Sum_probs=43.2
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHhHcCcEEEEEecCC--Ch---hHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHh
Q 011163 308 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK--LP---SASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 382 (492)
Q Consensus 308 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~lvivG~g~--~~---~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 382 (492)
..++++|. ....=...++.++.++ +..+.+++..+ -+ +..+..++.+.+. ...+.+. +...+.+.
T Consensus 3 l~i~~vGD-~~~rv~~Sl~~~~~~~---g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~-----~~~~e~l~ 72 (158)
T PF00185_consen 3 LKIAYVGD-GHNRVAHSLIELLAKF---GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKN-GGKITIT-----DDIEEALK 72 (158)
T ss_dssp EEEEEESS-TTSHHHHHHHHHHHHT---TSEEEEESSGGGGGSHHHHHHHHHHHHHHHH-TTEEEEE-----SSHHHHHT
T ss_pred CEEEEECC-CCChHHHHHHHHHHHc---CCEEEEECCCcccCCCCHHHHHHHHHHHHHh-CCCeEEE-----eCHHHhcC
Confidence 56888985 2222244555555554 57888888543 11 2333444555554 3567654 22335679
Q ss_pred cCCEEEECCCC
Q 011163 383 GSDIILCHSFH 393 (492)
Q Consensus 383 ~adi~v~pS~~ 393 (492)
.||++...++.
T Consensus 73 ~aDvvy~~~~~ 83 (158)
T PF00185_consen 73 GADVVYTDRWQ 83 (158)
T ss_dssp T-SEEEEESSS
T ss_pred CCCEEEEcCcc
Confidence 99998888764
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=23.07 E-value=1.3e+02 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.6
Q ss_pred cCcHHHH--HhHHHHHHHHC-CCeEEEEee
Q 011163 24 IGSLASY--VTGLSGALQRK-GHLVEVILP 50 (492)
Q Consensus 24 ~GG~~~~--~~~l~~~L~~~-Gh~V~vi~~ 50 (492)
.||+|+. ..+|+.++++. |++|.++=.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~ 37 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDL 37 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3777665 57899999998 999999843
No 440
>PRK06753 hypothetical protein; Provisional
Probab=22.91 E-value=1.1e+02 Score=30.16 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=21.9
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|+|++|.. |+. =..+|..|++.|++|.|+=.
T Consensus 1 ~~V~IvGg---------G~a--Gl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGA---------GIG--GLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred CEEEEECC---------CHH--HHHHHHHHHhCCCcEEEEec
Confidence 78887663 322 34457779999999998853
No 441
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.89 E-value=58 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHhhcCCceEEE
Q 011163 400 PLKALKYGAAPIAV 413 (492)
Q Consensus 400 ~lEAma~G~PvV~~ 413 (492)
++|++..|+||+|-
T Consensus 17 I~esav~G~pVvAL 30 (58)
T PF11238_consen 17 IAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHhcCceeEee
Confidence 68999999999984
No 442
>PLN02583 cinnamoyl-CoA reductase
Probab=22.85 E-value=1.3e+02 Score=28.73 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=18.8
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+-.-..+++.|.++||+|.++..
T Consensus 13 GatG~IG~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 13 DASGYVGFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 34444445677889999999988764
No 443
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.78 E-value=1.1e+02 Score=29.63 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=23.0
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+++.. |.+| ..++..|.+.||+|.++.+.
T Consensus 1 MkI~IiGa--------Ga~G---~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGA--------GSFG---TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECc--------CHHH---HHHHHHHHHCCCeEEEEecC
Confidence 67776553 4444 55677789999999988764
No 444
>PLN02214 cinnamoyl-CoA reductase
Probab=22.75 E-value=1.4e+02 Score=29.25 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=20.8
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.-..+++.|.++||+|.++...
T Consensus 17 GatGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 17 GAGGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 555555667888899999999887654
No 445
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=22.71 E-value=1.7e+02 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=25.8
Q ss_pred ceEEEEeeccccccccCcH-HHHHhHHHHHHHH-CCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQR-KGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~-~~~~~~l~~~L~~-~Gh~V~vi~~~ 51 (492)
+||++-.+ ||+ .....++.+.|.+ .|++|.|+...
T Consensus 2 k~IllgVT--------Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGIS--------GASGAIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHHhhcCCeEEEEECH
Confidence 46766554 554 4457789999999 59999999864
No 446
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=22.71 E-value=1.1e+02 Score=29.46 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=19.1
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.-..++++|.++|++|.++...
T Consensus 7 G~~G~iG~~l~~~L~~~g~~V~~~~r~ 33 (328)
T TIGR03466 7 GATGFVGSAVVRLLLEQGEEVRVLVRP 33 (328)
T ss_pred CCccchhHHHHHHHHHCCCEEEEEEec
Confidence 333333455778899999999888754
No 447
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.65 E-value=2e+02 Score=22.56 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=27.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCC---CeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG---HLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~G---h~V~vi~~~ 51 (492)
|+++++... .|+. .-.......++......| ++|.|+...
T Consensus 1 k~v~~i~~~-~p~~--~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPYD--DERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TTT--BSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCCC--CHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 678887763 4431 223777888888999999 999999865
No 448
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=22.56 E-value=1.9e+02 Score=26.48 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=36.9
Q ss_pred cccccC-HHHHHHHHHHHhHcCcEEEEEecCCC---hhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECC
Q 011163 316 DVSDVF-LENLKAVVRGAKMRGIQFVFTGTNKL---PSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHS 391 (492)
Q Consensus 316 l~~~Kg-~~~li~a~~~l~~~~~~lvivG~g~~---~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS 391 (492)
++|.|- .+...+.++.+.+.+...+++| |-+ .+..+.+-+..+++...-+.|.+.. ..+-..||.+++||
T Consensus 6 iDPdK~~~~~~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~~~-----~~i~~~aDa~l~~s 79 (223)
T TIGR01768 6 IDPDKTNPSEADEIAKAAAESGTDAILIG-GSQGVTYEKTDTLIEALRRYGLPIILFPSNP-----TNVSRDADALFFPS 79 (223)
T ss_pred ECCCCCCccccHHHHHHHHhcCCCEEEEc-CCCcccHHHHHHHHHHHhccCCCEEEeCCCc-----cccCcCCCEEEEEE
Confidence 455552 2234456666666677888888 432 1222233333344422334433222 13457799999999
Q ss_pred C
Q 011163 392 F 392 (492)
Q Consensus 392 ~ 392 (492)
.
T Consensus 80 v 80 (223)
T TIGR01768 80 V 80 (223)
T ss_pred e
Confidence 5
No 449
>PLN02240 UDP-glucose 4-epimerase
Probab=22.54 E-value=1.1e+02 Score=29.72 Aligned_cols=26 Identities=23% Similarity=-0.001 Sum_probs=18.6
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+-.-..|++.|.++||+|.++..
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 12 GGAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 44444445677889999999988763
No 450
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=22.45 E-value=1.6e+02 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.6
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.+|++| ..|+++|.++|++|++++.
T Consensus 24 SSG~iG---~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 24 STGQLG---KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred cchHHH---HHHHHHHHhCCCEEEEEEC
Confidence 345555 6778899999999999974
No 451
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.39 E-value=1.1e+02 Score=27.78 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.7
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
.|+|+++. ..||+| ..+++.|.++|++|.++..
T Consensus 6 ~~~ilItG-------asg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLITG-------GSGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEEC-------CCChHH---HHHHHHHHHCCCeEEEEcC
Confidence 36665533 246776 5788899999999988764
No 452
>PLN02210 UDP-glucosyl transferase
Probab=22.30 E-value=1.4e+02 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=33.0
Q ss_pred CccccCCCceEEEEeeccccccccCcHHHHHhHHHHH--HHHCCCeEEEEeecC
Q 011163 1 MEKWLRNGFHIIHICTEMDPLVSIGSLASYVTGLSGA--LQRKGHLVEVILPKY 52 (492)
Q Consensus 1 ~~~~~~~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~--L~~~Gh~V~vi~~~~ 52 (492)
|+....++.||+++. +| . -|==.-+.+|++. |+++|+.|+++++..
T Consensus 1 ~~~~~~~~~hvv~~P---~p--a-~GHi~P~l~La~~L~L~~~G~~VT~v~t~~ 48 (456)
T PLN02210 1 MGSSEGQETHVLMVT---LA--F-QGHINPMLKLAKHLSLSSKNLHFTLATTEQ 48 (456)
T ss_pred CCCcCCCCCEEEEeC---Cc--c-cccHHHHHHHHHHHHhhcCCcEEEEEeccc
Confidence 555666678888854 23 2 2444557789999 569999999998764
No 453
>PRK07326 short chain dehydrogenase; Provisional
Probab=22.26 E-value=1.3e+02 Score=27.10 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=17.4
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|.+..-..+++.|.++|++|.++..
T Consensus 14 atg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 14 GSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 3333445677778899999888764
No 454
>PRK07856 short chain dehydrogenase; Provisional
Probab=22.24 E-value=1.5e+02 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=18.9
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.+-.-..+++.|.++|++|.++...
T Consensus 13 Gas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 13 GGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 333333467788899999999887653
No 455
>PRK07576 short chain dehydrogenase; Provisional
Probab=22.23 E-value=1.6e+02 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.2
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.++...
T Consensus 18 sggIG---~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 18 TSGIN---LGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45665 56677788999998877643
No 456
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=22.19 E-value=1.8e+02 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.5
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
||++||- .++|+|. ..+++|.+.|++|.+...+..
T Consensus 7 kv~lITG------ASSGiG~---A~A~~l~~~G~~vvl~aRR~d 41 (246)
T COG4221 7 KVALITG------ASSGIGE---ATARALAEAGAKVVLAARREE 41 (246)
T ss_pred cEEEEec------CcchHHH---HHHHHHHHCCCeEEEEeccHH
Confidence 7888885 4578874 568889999999988886543
No 457
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=22.05 E-value=1.5e+02 Score=28.99 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=27.3
Q ss_pred CCceEEEEeeccccccccCcHHH--HHhHHHHHHHHCCCeEEEEee
Q 011163 7 NGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~--~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
++.||+.|+. .||+|+ ...+|+.+|+++|.+|.++-.
T Consensus 29 ~~~~ii~v~g-------kgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 29 KKTQIIAIYG-------KGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCeEEEEEC-------CCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 4467766663 266654 567899999999999999954
No 458
>PRK06444 prephenate dehydrogenase; Provisional
Probab=21.99 E-value=1.4e+02 Score=26.74 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=20.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVE 46 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~ 46 (492)
|||++|.. .|++|+.+... |.+.||+|.
T Consensus 1 ~~~~iiG~-------~G~mG~~~~~~---~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGK-------NGRLGRVLCSI---LDDNGLGVY 28 (197)
T ss_pred CEEEEEec-------CCcHHHHHHHH---HHhCCCEEE
Confidence 78888774 47888776554 677899986
No 459
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.77 E-value=1.5e+02 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.038 Sum_probs=18.1
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.+-.-..+++.|.++|++|.++...
T Consensus 19 as~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 19 SARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 33334466777889999998877653
No 460
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.75 E-value=1.5e+02 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=22.4
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|.++|+- ..||+| ..+++.|.++|++|.++..
T Consensus 7 k~vlVtG------as~gIG---~~ia~~l~~~G~~V~~~~r 38 (263)
T PRK06200 7 QVALITG------GGSGIG---RALVERFLAEGARVAVLER 38 (263)
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555553 246666 5678889999999877754
No 461
>PRK06196 oxidoreductase; Provisional
Probab=21.48 E-value=1.4e+02 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=23.1
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+| ..+++.|.++|++|.+++..
T Consensus 27 k~vlITG------asggIG---~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 27 KTAIVTG------GYSGLG---LETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5555553 346776 56678899999999877643
No 462
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.47 E-value=1.6e+02 Score=29.66 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.1
Q ss_pred CceEEEEeeccccccccCcHH-HHHhHHHHHHHHCCCeEEEEeec
Q 011163 8 GFHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~-~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.+||++..+ |+++ ..+.++.+.|.+.|++|.|+...
T Consensus 6 ~k~IllgvT--------Gsiaa~k~~~lv~~L~~~g~~V~vv~T~ 42 (399)
T PRK05579 6 GKRIVLGVS--------GGIAAYKALELVRRLRKAGADVRVVMTE 42 (399)
T ss_pred CCeEEEEEe--------CHHHHHHHHHHHHHHHhCCCEEEEEECH
Confidence 467887665 3433 35778999999999999999754
No 463
>PRK08589 short chain dehydrogenase; Validated
Probab=21.46 E-value=1.6e+02 Score=27.56 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=24.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+| ..+++.|.++|++|.++...
T Consensus 7 k~vlItG------as~gIG---~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITG------ASTGIG---QASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCc
Confidence 5666663 346666 67888999999999888654
No 464
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=21.46 E-value=1e+02 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||++|... .=|.+.|. .|.+.||+|.++..
T Consensus 1 mkiaiigqs------~fg~~vy~-----~lrk~gheiv~vft 31 (881)
T KOG2452|consen 1 MKIAVIGQS------LFGQEVYC-----HLRKEGHEVVGVFT 31 (881)
T ss_pred CeeEEechh------hhhHHHHH-----HHHhcCceEEEEEE
Confidence 899998763 23566654 59999999887753
No 465
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.44 E-value=2.6e+02 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=30.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
-.|++|+. |..-..+.+.++.|.+.|.++.|+.+.
T Consensus 10 ~di~iia~--------G~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAY--------GSMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEE--------TTHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEee--------hHHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 46777774 888899999999999999999999865
No 466
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=21.43 E-value=6.1e+02 Score=22.90 Aligned_cols=84 Identities=12% Similarity=-0.037 Sum_probs=43.7
Q ss_pred CcEEEEEecCC--ChhHHHHHHHHHHHhCCCeEEEEecc-----CHHHHHHHHhcCCEEEECCC--------CCCCch--
Q 011163 336 GIQFVFTGTNK--LPSASRALVSFQEELKDGIVIFVDSY-----DDALLHLIFSGSDIILCHSF--------HDPLLQ-- 398 (492)
Q Consensus 336 ~~~lvivG~g~--~~~~~~~l~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~adi~v~pS~--------~E~~gl-- 398 (492)
+.+++++.... ..++.+++.+..++++...+.++... +.+...+.+..||++++.-- +...++
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~ 108 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLD 108 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHH
Confidence 45666665321 12233444444444433344433222 22333456677888777631 223333
Q ss_pred HHHHHhhcCCceEEEecCCCccc
Q 011163 399 VPLKALKYGAAPIAVTSSDIEFR 421 (492)
Q Consensus 399 v~lEAma~G~PvV~~~~~~gg~~ 421 (492)
.+.++...|+|++.++. |.+.
T Consensus 109 ~l~~~~~~G~v~~G~SA--GA~i 129 (217)
T cd03145 109 ALRKVYRGGVVIGGTSA--GAAV 129 (217)
T ss_pred HHHHHHHcCCEEEEccH--HHHh
Confidence 45667788998888877 5544
No 467
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=21.42 E-value=3.7e+02 Score=26.49 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=41.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCeEEEEeccCH-HHHHHHHhcCCEEEECCCCCCCchHH
Q 011163 336 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDD-ALLHLIFSGSDIILCHSFHDPLLQVP 400 (492)
Q Consensus 336 ~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~adi~v~pS~~E~~glv~ 400 (492)
+-.|+|+|+. +.++.+|-+. ..-|..+|+|+. +++..+-..-++=|+.|.|++|-.+-
T Consensus 114 ~g~LlIVGnR------~~iq~lAL~~-~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAt 172 (432)
T COG4109 114 PGGLLIVGNR------EDIQLLALEN-GNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVAT 172 (432)
T ss_pred CCceEEEecH------HHHHHHHHhc-CCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHH
Confidence 4689999943 3455555554 367888899963 55556777778888889999998664
No 468
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.35 E-value=1.8e+02 Score=25.54 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=20.5
Q ss_pred CcHHH-HHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLAS-YVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~-~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|+.+. ...++.+.|.+.|++|.++...
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 44433 4568999999999999998754
No 469
>PRK06914 short chain dehydrogenase; Provisional
Probab=21.29 E-value=1.4e+02 Score=27.84 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.3
Q ss_pred cHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 26 SLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 26 G~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.+-.-..+++.|.++|++|.++...
T Consensus 11 asg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 11 ASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 33333466778889999999877643
No 470
>PRK10867 signal recognition particle protein; Provisional
Probab=21.27 E-value=8.9e+02 Score=24.74 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=79.0
Q ss_pred HHHHHHhHcCcEEEEEecCC----ChhHHHHHHHHHHHhCCCeEEEEe-ccCH-HH---HHHHHhc--CCEEEECCCC--
Q 011163 327 AVVRGAKMRGIQFVFTGTNK----LPSASRALVSFQEELKDGIVIFVD-SYDD-AL---LHLIFSG--SDIILCHSFH-- 393 (492)
Q Consensus 327 ~a~~~l~~~~~~lvivG~g~----~~~~~~~l~~~~~~~~~~~v~~~~-~~~~-~~---~~~~~~~--adi~v~pS~~-- 393 (492)
++++.....+..++|+-..| +..+.+++..+.....++.+.+.. .... +. ...+... .+-+|++-.-
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 34444444456666665333 234555666665544334444432 2221 11 1222222 3456665443
Q ss_pred CCCchHHHHHhhcCCceEEEecCCCc-ccccccccccccceeeeeecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Q 011163 394 DPLLQVPLKALKYGAAPIAVTSSDIE-FRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDF 472 (492)
Q Consensus 394 E~~glv~lEAma~G~PvV~~~~~~gg-~~e~v~~~~~~~g~~G~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~a~~~~f 472 (492)
.-.|.++--+...|+|+.-..+ |- +.|+-..+. +.....++.-+|..+|.+.++...+ .+..+++.+.-...+|
T Consensus 254 ~rgG~alsi~~~~~~PI~fig~--Ge~v~DLe~f~p--~~~~~~ilgmgD~~~l~e~~~~~~~-~~~~~~~~~~~~~g~f 328 (433)
T PRK10867 254 ARGGAALSIRAVTGKPIKFIGT--GEKLDDLEPFHP--DRMASRILGMGDVLSLIEKAQEVVD-EEKAEKLAKKLKKGKF 328 (433)
T ss_pred ccccHHHHHHHHHCcCEEEEeC--CCccccCccCCH--HHHHHHHhCCCChHHHHHHHHHhhC-HHHHHHHHHHHHhCCC
Confidence 2345544445678998888666 42 222211110 1112345567788888888888754 4444555555555689
Q ss_pred CchhhHHHHHHH
Q 011163 473 SWDADCNDIHIS 484 (492)
Q Consensus 473 sw~~~a~~~~~~ 484 (492)
+.+.+-+|+ ..
T Consensus 329 ~l~d~~~q~-~~ 339 (433)
T PRK10867 329 DLEDFLEQL-QQ 339 (433)
T ss_pred CHHHHHHHH-HH
Confidence 999988884 53
No 471
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.27 E-value=1.3e+02 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=24.7
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||+++.. |++|.+. +..|.+.||+|+++...
T Consensus 1 mkI~IlGa--------GAvG~l~---g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 1 MKILILGA--------GAIGSLL---GARLAKAGHDVTLLVRS 32 (307)
T ss_pred CeEEEECC--------cHHHHHH---HHHHHhCCCeEEEEecH
Confidence 78988765 7777654 56699999988888754
No 472
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.03 E-value=1.2e+02 Score=29.61 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=22.7
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.|-.=..|++.|.++|++|..+..
T Consensus 22 GatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 22 GVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 78888888899999999999987764
No 473
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.03 E-value=6.2e+02 Score=22.82 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=53.0
Q ss_pred ccCHHHHHHHHHHHhH-cCcEEEEEecCCChhHHHHHHHHHHHhCCCeE--EEEecc-CHHHHHHHHhcCCEEEECCC-C
Q 011163 319 DVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIV--IFVDSY-DDALLHLIFSGSDIILCHSF-H 393 (492)
Q Consensus 319 ~Kg~~~li~a~~~l~~-~~~~lvivG~g~~~~~~~~l~~~~~~~~~~~v--~~~~~~-~~~~~~~~~~~adi~v~pS~-~ 393 (492)
.|=...|..|++-+.. .+-+++++|.. +...+.+++.++..+..-| +|+||. ....... +..=|++++..- .
T Consensus 49 ~kT~~~L~~A~~~i~~~~~~~ILfVgTk--~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~-~~~Pdliiv~dp~~ 125 (204)
T PRK04020 49 RKTDERIRIAAKFLSRYEPEKILVVSSR--QYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKG-YIEPDVVVVTDPRG 125 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhc-cCCCCEEEEECCcc
Confidence 3334455666654443 35678888854 3456677777777642111 455554 2222222 233455555443 3
Q ss_pred CCCchHHHHHhhcCCceEEEec
Q 011163 394 DPLLQVPLKALKYGAAPIAVTS 415 (492)
Q Consensus 394 E~~glv~lEAma~G~PvV~~~~ 415 (492)
| ..++.||...|.|+|+--.
T Consensus 126 ~--~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 126 D--AQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred c--HHHHHHHHHhCCCEEEEEe
Confidence 3 4778999999999998543
No 474
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=20.93 E-value=1.9e+02 Score=23.16 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=27.6
Q ss_pred eEEEEeeccccccccCc-HHHHHhHHHHHHHHCCCeEEEEeecC
Q 011163 10 HIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILPKY 52 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG-~~~~~~~l~~~L~~~Gh~V~vi~~~~ 52 (492)
||++|... .|+ |+ -..-..+++-+++..+++|.|+....
T Consensus 1 kil~i~~~-~Py---g~~~~~e~l~~al~~aa~~~eV~vff~~D 40 (116)
T TIGR03010 1 KLAFVFRQ-APH---GTASGREGLDALLAASAFDEDIGVFFIDD 40 (116)
T ss_pred CEEEEEcC-CCC---CcchHHHHHHHHHHHHhccCCeEEEEech
Confidence 57887764 675 33 44445667888888999999997653
No 475
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.79 E-value=1.7e+02 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=23.7
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||+++|.. . -+....+..+-+.+.++|.++.+-...
T Consensus 3 kILlvCg~-----G-~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 3 KALIICAA-----G-MSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred EEEEECCC-----c-hHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 69988862 1 134455666666777799988876543
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=20.64 E-value=1.5e+02 Score=27.67 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=19.0
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+|. .+++.|.++|++|.++...
T Consensus 12 sggiG~---~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 12 SSGIGK---ATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 467765 4778899999999877643
No 477
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.64 E-value=1.7e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.7
Q ss_pred ccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 23 SIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 23 ~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.+|.++.++..+++++.+.|++|.++-..
T Consensus 8 ~tGnT~~~A~~i~~~~~~~g~~v~~~~~~ 36 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKEAGAEVDLLEVA 36 (140)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46999999999999999999999888654
No 478
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.63 E-value=2e+02 Score=27.57 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=29.8
Q ss_pred CceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 8 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 8 ~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
+|||++++-...+. .--.-......+++|.+.||+|..+-.
T Consensus 3 ~~~i~vl~gg~s~e--~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYGGDSPE--REVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeCCCCCc--hHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 57999998754442 223345677899999999999977743
No 479
>PRK07478 short chain dehydrogenase; Provisional
Probab=20.58 E-value=1.6e+02 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=23.1
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+|. .+++.|.+.|++|.++...
T Consensus 7 k~~lItG------as~giG~---~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 7 KVAIITG------ASSGIGR---AAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CEEEEeC------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 4555563 3467775 5678899999998877643
No 480
>PLN02650 dihydroflavonol-4-reductase
Probab=20.53 E-value=1.7e+02 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=21.3
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||.|-.=..|++.|.++|++|.++...
T Consensus 12 GatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 12 GASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 566666677889999999999887654
No 481
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.52 E-value=1.6e+02 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=18.9
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+|.. +++.|.++|++|.++...
T Consensus 15 sggiG~~---la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 15 SQGLGEQ---VAKAYAAAGATVILVARH 39 (239)
T ss_pred CCcHHHH---HHHHHHHcCCEEEEEeCC
Confidence 4677754 678889999998877654
No 482
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.51 E-value=1.6e+02 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=19.3
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
+||+| ..+++.|.++|++|.++...
T Consensus 13 sg~iG---~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 13 ASGIG---LEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CchHH---HHHHHHHHHCCCeEEEEeCC
Confidence 35555 67888999999999887654
No 483
>PRK08655 prephenate dehydrogenase; Provisional
Probab=20.51 E-value=1.2e+02 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=23.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|||++| ||.|..-..++.+|.+.||+|.++...
T Consensus 1 MkI~II----------GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISII----------GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEE----------ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 677665 344444566788889999999888754
No 484
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.46 E-value=5.2e+02 Score=22.38 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=19.6
Q ss_pred HHHHHhcCCEEEEC--CCCCCCch---HHHHHhhcCC
Q 011163 377 LHLIFSGSDIILCH--SFHDPLLQ---VPLKALKYGA 408 (492)
Q Consensus 377 ~~~~~~~adi~v~p--S~~E~~gl---v~lEAma~G~ 408 (492)
+.++++.||++++. .--|+.++ ..++.|--|.
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga 121 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGA 121 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTE
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccce
Confidence 44678999997765 33455444 4577777776
No 485
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=20.44 E-value=8.4e+02 Score=24.15 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=58.8
Q ss_pred eeecCCCCCCCcCCCCCcccccccCccCccChHHHHHHHHHHhCCCC--CCCceEEEEEeccccccCH---HHHHHHHHH
Q 011163 257 LVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSK--DASTIVVGCIFSDVSDVFL---ENLKAVVRG 331 (492)
Q Consensus 257 ~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~--~~~~~~i~~~grl~~~Kg~---~~li~a~~~ 331 (492)
..|-|+-+ +.++|. ..-.+--.+++++|-.. ......+++.|.+...++. ..++.++..
T Consensus 136 vPVINa~~-~~~HPt---------------QaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~ 199 (357)
T TIGR03316 136 PPLVNLQC-DIDHPT---------------QAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTR 199 (357)
T ss_pred CCEEECCC-CCCCch---------------HHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence 34556665 567885 11224456777887421 1122344455544333332 346666655
Q ss_pred HhHcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCeEEEEeccCHHHHHHHHhcCCEEEECCC
Q 011163 332 AKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 392 (492)
Q Consensus 332 l~~~~~~lvivG~g~---~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~adi~v~pS~ 392 (492)
+ ++++.+++..+ .++..+..++.+++.+ ..+.+. + ...+.+..||++...++
T Consensus 200 ~---G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g-~~~~~~---~--d~~ea~~~aDvvyt~~w 254 (357)
T TIGR03316 200 F---GMDVTLAHPEGYHLLPEVIEVAKKNAAENG-GKFNIV---N--SMDEAFKDADIVYPKSW 254 (357)
T ss_pred c---CCEEEEECCCcccCCHHHHHHHHHHHHHcC-CeEEEE---c--CHHHHhCCCCEEEECCe
Confidence 4 68999998542 1222333344445542 344432 1 22356799999998864
No 486
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.43 E-value=1.7e+02 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.2
Q ss_pred eEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 10 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 10 kIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
|.++|+- ..||+| ..+++.|.++|++|.++...
T Consensus 8 k~vlVtG------as~gIG---~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 8 KVALVTG------AAQGIG---AAIARAFAREGAAVALADLD 40 (260)
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4556563 246666 56788899999998877643
No 487
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=20.42 E-value=1.4e+02 Score=18.60 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=17.5
Q ss_pred eeecCCCHHHHHHHHHHHhcC
Q 011163 436 FISSTFGNISLSQALEEIKNN 456 (492)
Q Consensus 436 ~~~~~~~~~~l~~ai~~~~~~ 456 (492)
..|.+...+.+.++|.+++.+
T Consensus 16 ~~F~~~s~et~~DKi~rli~~ 36 (37)
T PF14202_consen 16 VHFSETSKETMQDKIKRLIRR 36 (37)
T ss_pred EEECCCccccHHHHHHHHHhc
Confidence 678888888999999998753
No 488
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=20.34 E-value=1.8e+02 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.1
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
|||+.|+.. +..|=.+.+.+|+.+|.++| .|-++=.
T Consensus 1 M~~i~i~G~-----~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-----KATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-----CCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 787777752 23678899999999999999 7777744
No 489
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=20.26 E-value=3.1e+02 Score=20.22 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=23.6
Q ss_pred ceEEEEeeccccccccCcHHHHHhHHHHHHHHCCCeEEEE
Q 011163 9 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 48 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh~V~vi 48 (492)
-.+++|+..+ |.-.....++++.|.+.|..|..+
T Consensus 16 k~~v~i~HG~------~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGF------GEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCc------HHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566666642 333446778999999999988654
No 490
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.22 E-value=2e+02 Score=26.23 Aligned_cols=42 Identities=17% Similarity=0.019 Sum_probs=27.7
Q ss_pred ceEEEEeeccccccccCcHH-HHHhHHHHHHHHCCCeEEEEeecCC
Q 011163 9 FHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPKYA 53 (492)
Q Consensus 9 mkIl~v~~~~~p~~~~GG~~-~~~~~l~~~L~~~Gh~V~vi~~~~~ 53 (492)
+||+++...+.- .+|.+ .=+..-...|.+.|++|++++|...
T Consensus 2 kkVlills~~~~---~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~ 44 (217)
T PRK11780 2 KKIAVILSGCGV---YDGSEIHEAVLTLLALDRAGAEAVCFAPDIP 44 (217)
T ss_pred CEEEEEEccCCC---CCCEehhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 389988864321 13443 2334456788999999999998643
No 491
>PRK12829 short chain dehydrogenase; Provisional
Probab=20.20 E-value=1.3e+02 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.3
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
||++ ..+++.|.++|++|.++...
T Consensus 21 g~iG---~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 21 SGIG---RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CcHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5665 66788899999998777643
No 492
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=20.16 E-value=1.3e+02 Score=29.45 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=18.5
Q ss_pred CcHHHHHhHHHHHHHHCCCeEEEEee
Q 011163 25 GSLASYVTGLSGALQRKGHLVEVILP 50 (492)
Q Consensus 25 GG~~~~~~~l~~~L~~~Gh~V~vi~~ 50 (492)
||.+-.-..|+++|.++|++|.++..
T Consensus 8 GatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 8 GGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 45555556688999999998765543
No 493
>PRK05884 short chain dehydrogenase; Provisional
Probab=20.13 E-value=1.3e+02 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=19.2
Q ss_pred cCcHHHHHhHHHHHHHHCCCeEEEEeec
Q 011163 24 IGSLASYVTGLSGALQRKGHLVEVILPK 51 (492)
Q Consensus 24 ~GG~~~~~~~l~~~L~~~Gh~V~vi~~~ 51 (492)
.||+| ..+++.|.++|++|.++...
T Consensus 9 s~giG---~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 9 DTDLG---RTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46666 56788899999999887643
No 494
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=20.01 E-value=2.5e+02 Score=23.69 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=30.3
Q ss_pred CCceEEEEeeccccccccCcHHHHHhHHHHHHHHCCC---eEEEEe
Q 011163 7 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH---LVEVIL 49 (492)
Q Consensus 7 ~~mkIl~v~~~~~p~~~~GG~~~~~~~l~~~L~~~Gh---~V~vi~ 49 (492)
+++||++|.+.|.+.. +......-...|.+.|. ++.++.
T Consensus 2 ~~~ri~IV~s~~n~~i----~~~ll~~a~~~l~~~g~~~~~i~~~~ 43 (144)
T PF00885_consen 2 SGLRIAIVVSRFNEEI----TDRLLEGALEELKRHGVAEENIEVIR 43 (144)
T ss_dssp TTEEEEEEEESTTHHH----HHHHHHHHHHHHHHTTTTGGCEEEEE
T ss_pred CCCEEEEEEEeccHHH----HHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5689999999988753 56667777788888987 666666
Done!