Query 011164
Match_columns 492
No_of_seqs 408 out of 3866
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 4.6E-54 1E-58 412.8 29.4 293 162-491 2-300 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 1.2E-32 2.7E-37 265.1 13.1 319 45-485 1-327 (397)
3 KOG0549 FKBP-type peptidyl-pro 100.0 3.4E-30 7.5E-35 220.7 16.7 176 197-386 1-180 (188)
4 KOG0545 Aryl-hydrocarbon recep 100.0 5.5E-30 1.2E-34 229.0 8.6 221 268-491 8-273 (329)
5 KOG0544 FKBP-type peptidyl-pro 99.9 1.7E-26 3.7E-31 174.0 11.6 106 38-143 2-107 (108)
6 KOG0544 FKBP-type peptidyl-pro 99.9 3.1E-26 6.8E-31 172.6 11.4 107 271-382 2-108 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 1.2E-25 2.5E-30 197.6 12.7 108 33-143 97-204 (205)
8 KOG0549 FKBP-type peptidyl-pro 99.9 8.4E-25 1.8E-29 187.6 14.6 169 85-262 1-177 (188)
9 COG0545 FkpA FKBP-type peptidy 99.9 4E-24 8.7E-29 187.9 12.2 107 267-381 98-204 (205)
10 PRK11570 peptidyl-prolyl cis-t 99.9 1.5E-21 3.2E-26 178.4 14.6 108 33-143 98-205 (206)
11 TIGR03516 ppisom_GldI peptidyl 99.9 1E-20 2.2E-25 168.7 14.2 110 33-144 65-176 (177)
12 KOG0552 FKBP-type peptidyl-pro 99.8 1.8E-20 3.9E-25 169.4 12.5 108 33-143 116-225 (226)
13 PRK11570 peptidyl-prolyl cis-t 99.8 6.4E-20 1.4E-24 167.6 13.7 107 267-381 99-205 (206)
14 KOG0552 FKBP-type peptidyl-pro 99.8 4.4E-20 9.5E-25 166.9 12.3 109 266-382 116-226 (226)
15 TIGR03516 ppisom_GldI peptidyl 99.8 1.7E-19 3.7E-24 160.8 13.7 109 267-382 66-176 (177)
16 PRK10902 FKBP-type peptidyl-pr 99.8 5.1E-19 1.1E-23 167.5 14.9 109 33-145 142-250 (269)
17 PF00254 FKBP_C: FKBP-type pep 99.8 1.4E-18 3E-23 140.2 12.1 94 282-379 1-94 (94)
18 COG1047 SlpA FKBP-type peptidy 99.8 5.3E-19 1.1E-23 153.2 10.0 135 52-198 2-141 (174)
19 PF00254 FKBP_C: FKBP-type pep 99.8 2E-18 4.2E-23 139.3 12.3 93 49-141 1-94 (94)
20 PRK15095 FKBP-type peptidyl-pr 99.8 5.2E-19 1.1E-23 154.7 9.5 134 52-194 4-140 (156)
21 PRK10902 FKBP-type peptidyl-pr 99.8 9.7E-18 2.1E-22 158.9 14.5 108 268-384 144-251 (269)
22 PRK10737 FKBP-type peptidyl-pr 99.7 1.3E-17 2.8E-22 149.6 10.5 126 52-194 2-136 (196)
23 KOG4234 TPR repeat-containing 99.6 2.5E-15 5.5E-20 131.5 7.1 86 394-489 90-175 (271)
24 PRK15095 FKBP-type peptidyl-pr 99.6 2E-14 4.4E-19 125.8 10.5 72 285-358 4-75 (156)
25 KOG0547 Translocase of outer m 99.6 1.8E-15 3.9E-20 148.3 3.8 90 387-491 103-192 (606)
26 COG1047 SlpA FKBP-type peptidy 99.5 4.3E-13 9.3E-18 116.6 10.4 72 285-358 2-73 (174)
27 PRK10737 FKBP-type peptidyl-pr 99.4 6E-13 1.3E-17 119.5 10.3 70 286-358 3-72 (196)
28 KOG0551 Hsp90 co-chaperone CNS 99.4 1.4E-13 3E-18 129.5 6.2 83 398-491 80-162 (390)
29 KOG0553 TPR repeat-containing 99.4 1.2E-13 2.6E-18 129.1 4.8 82 392-488 74-155 (304)
30 KOG0548 Molecular co-chaperone 99.3 1.3E-12 2.8E-17 130.2 4.3 81 397-492 356-436 (539)
31 KOG4648 Uncharacterized conser 99.3 7.7E-13 1.7E-17 124.7 0.9 88 389-491 87-174 (536)
32 TIGR00990 3a0801s09 mitochondr 99.2 4.9E-11 1.1E-15 129.2 8.0 109 365-490 94-202 (615)
33 KOG4642 Chaperone-dependent E3 99.1 4.7E-11 1E-15 107.8 2.1 76 397-487 8-83 (284)
34 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4.1E-14 81.2 6.9 66 399-479 3-69 (69)
35 KOG0550 Molecular chaperone (D 98.9 4.4E-10 9.6E-15 108.9 3.5 84 395-489 245-328 (486)
36 KOG0548 Molecular co-chaperone 98.8 2.2E-09 4.7E-14 107.5 2.6 79 399-492 2-80 (539)
37 KOG0545 Aryl-hydrocarbon recep 98.7 2.3E-09 4.9E-14 97.3 0.3 116 34-150 7-163 (329)
38 TIGR00115 tig trigger factor. 98.7 6.2E-08 1.3E-12 99.6 10.6 101 51-159 145-245 (408)
39 KOG0376 Serine-threonine phosp 98.7 4.9E-09 1.1E-13 104.2 1.6 79 397-490 2-80 (476)
40 TIGR00115 tig trigger factor. 98.7 2.5E-07 5.4E-12 95.1 13.4 91 284-387 145-235 (408)
41 PLN03088 SGT1, suppressor of 98.6 2.9E-08 6.3E-13 99.8 4.3 77 399-490 2-78 (356)
42 PRK01490 tig trigger factor; P 98.6 2.1E-07 4.6E-12 96.4 10.6 100 52-159 157-256 (435)
43 PRK01490 tig trigger factor; P 98.6 7E-07 1.5E-11 92.5 13.4 90 284-386 156-245 (435)
44 COG0544 Tig FKBP-type peptidyl 98.5 9.7E-08 2.1E-12 97.4 6.3 140 11-160 115-257 (441)
45 PF13432 TPR_16: Tetratricopep 98.5 3.6E-07 7.7E-12 67.8 5.7 64 404-482 2-65 (65)
46 KOG0546 HSP90 co-chaperone CPR 98.4 4.2E-08 9.2E-13 93.9 -0.1 99 391-489 214-316 (372)
47 COG0544 Tig FKBP-type peptidyl 98.4 4.4E-06 9.6E-11 85.4 12.6 88 286-386 158-245 (441)
48 PF13424 TPR_12: Tetratricopep 98.3 4.2E-06 9.2E-11 64.4 8.8 74 397-478 3-76 (78)
49 PRK15363 pathogenicity island 98.2 5.2E-06 1.1E-10 71.9 7.5 76 398-488 34-109 (157)
50 PRK15359 type III secretion sy 98.2 1.8E-06 3.8E-11 75.2 4.7 72 402-488 27-98 (144)
51 PRK15359 type III secretion sy 98.2 2.5E-06 5.5E-11 74.2 5.0 75 399-488 58-132 (144)
52 KOG0550 Molecular chaperone (D 98.1 3E-06 6.6E-11 82.8 4.7 83 391-488 41-123 (486)
53 PF13371 TPR_9: Tetratricopept 98.1 7.3E-06 1.6E-10 62.1 6.0 63 407-484 3-65 (73)
54 PF00515 TPR_1: Tetratricopept 98.1 4.8E-06 1E-10 52.9 3.9 33 449-481 2-34 (34)
55 PF14559 TPR_19: Tetratricopep 98.1 2.8E-06 6.1E-11 63.4 3.2 59 409-482 1-59 (68)
56 KOG1310 WD40 repeat protein [G 98.1 1.9E-06 4.1E-11 86.3 2.7 85 393-492 368-455 (758)
57 KOG1308 Hsp70-interacting prot 97.9 3.3E-06 7.1E-11 80.8 0.4 80 391-485 106-185 (377)
58 TIGR02552 LcrH_SycD type III s 97.8 3.1E-05 6.7E-10 66.3 5.5 85 399-483 17-120 (135)
59 PF07719 TPR_2: Tetratricopept 97.7 6.5E-05 1.4E-09 47.4 4.6 33 449-481 2-34 (34)
60 PRK02603 photosystem I assembl 97.7 6.4E-05 1.4E-09 67.5 6.2 83 394-488 30-112 (172)
61 PRK11189 lipoprotein NlpI; Pro 97.7 4E-05 8.6E-10 75.3 4.8 73 399-486 64-136 (296)
62 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 8.1E-05 1.8E-09 74.9 6.6 71 395-477 71-141 (453)
63 CHL00033 ycf3 photosystem I as 97.6 0.00017 3.7E-09 64.4 7.3 81 395-487 31-111 (168)
64 PLN03088 SGT1, suppressor of 97.6 0.00016 3.4E-09 72.9 7.2 72 400-486 37-108 (356)
65 PRK10866 outer membrane biogen 97.5 0.00044 9.5E-09 65.7 8.9 73 400-484 33-105 (243)
66 cd00189 TPR Tetratricopeptide 97.4 0.00021 4.5E-09 55.3 4.9 72 402-488 3-74 (100)
67 TIGR02552 LcrH_SycD type III s 97.4 0.00033 7.1E-09 59.8 6.4 39 448-486 51-89 (135)
68 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00018 3.8E-09 50.5 3.8 37 449-485 2-38 (53)
69 KOG4555 TPR repeat-containing 97.4 0.00069 1.5E-08 56.2 7.5 74 393-481 37-110 (175)
70 KOG4626 O-linked N-acetylgluco 97.4 0.00019 4.2E-09 73.7 5.1 48 444-491 452-499 (966)
71 TIGR03302 OM_YfiO outer membra 97.4 0.00054 1.2E-08 64.7 7.7 74 398-483 32-105 (235)
72 PRK10370 formate-dependent nit 97.4 0.00023 4.9E-09 65.5 4.7 84 399-482 73-178 (198)
73 PF13512 TPR_18: Tetratricopep 97.3 0.00057 1.2E-08 58.3 6.6 75 400-486 11-85 (142)
74 KOG4626 O-linked N-acetylgluco 97.3 0.00035 7.5E-09 71.9 5.7 86 402-487 323-427 (966)
75 PRK11189 lipoprotein NlpI; Pro 97.3 0.00055 1.2E-08 67.2 7.0 69 399-482 98-166 (296)
76 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0013 2.9E-08 54.3 7.7 34 449-482 77-110 (119)
77 PF13414 TPR_11: TPR repeat; P 97.2 0.00013 2.8E-09 54.5 1.1 43 448-490 3-45 (69)
78 PF13525 YfiO: Outer membrane 97.1 0.0015 3.2E-08 60.4 7.8 73 399-483 5-77 (203)
79 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0012 2.6E-08 54.5 6.6 71 400-482 3-73 (119)
80 PF12895 Apc3: Anaphase-promot 97.1 0.00039 8.5E-09 54.2 2.9 61 412-486 2-62 (84)
81 KOG0553 TPR repeat-containing 97.1 0.0013 2.8E-08 62.5 6.8 64 404-482 120-183 (304)
82 PF12895 Apc3: Anaphase-promot 97.0 0.002 4.3E-08 50.2 6.4 58 401-474 27-84 (84)
83 PF13428 TPR_14: Tetratricopep 97.0 0.00061 1.3E-08 46.0 2.9 41 449-489 2-42 (44)
84 PF13181 TPR_8: Tetratricopept 97.0 0.0011 2.4E-08 41.7 3.9 33 449-481 2-34 (34)
85 PRK15331 chaperone protein Sic 97.0 0.003 6.5E-08 55.2 7.5 75 398-487 36-110 (165)
86 TIGR00990 3a0801s09 mitochondr 97.0 0.0012 2.5E-08 71.9 6.1 91 399-489 331-440 (615)
87 KOG4814 Uncharacterized conser 97.0 0.0029 6.3E-08 65.4 8.3 74 400-482 355-428 (872)
88 KOG1840 Kinesin light chain [C 96.9 0.0032 7E-08 65.5 8.8 77 395-478 237-313 (508)
89 KOG4151 Myosin assembly protei 96.9 0.0005 1.1E-08 72.9 2.9 88 390-488 44-133 (748)
90 TIGR02521 type_IV_pilW type IV 96.9 0.0018 4E-08 59.8 6.4 74 398-486 30-103 (234)
91 KOG2003 TPR repeat-containing 96.9 0.00029 6.4E-09 69.7 0.5 72 404-485 242-313 (840)
92 COG5010 TadD Flp pilus assembl 96.9 0.0015 3.2E-08 60.9 4.9 73 401-488 102-174 (257)
93 COG3063 PilF Tfp pilus assembl 96.9 0.0022 4.9E-08 58.6 5.9 73 399-484 103-175 (250)
94 PRK12370 invasion protein regu 96.8 0.0023 5E-08 68.6 6.8 69 402-485 341-409 (553)
95 PRK15179 Vi polysaccharide bio 96.8 0.0011 2.3E-08 72.2 4.1 80 397-491 118-197 (694)
96 PRK15363 pathogenicity island 96.7 0.003 6.6E-08 54.9 5.7 63 401-478 71-133 (157)
97 KOG4234 TPR repeat-containing 96.7 0.0041 9E-08 55.6 6.5 71 399-484 134-204 (271)
98 PF15015 NYD-SP12_N: Spermatog 96.7 0.0041 8.9E-08 61.4 6.8 81 403-483 180-263 (569)
99 PRK09782 bacteriophage N4 rece 96.7 0.0018 3.8E-08 73.4 4.7 27 402-428 612-638 (987)
100 PRK02603 photosystem I assembl 96.7 0.0061 1.3E-07 54.6 7.4 69 399-482 72-154 (172)
101 TIGR02521 type_IV_pilW type IV 96.6 0.0045 9.8E-08 57.1 6.2 71 404-487 104-174 (234)
102 KOG0624 dsRNA-activated protei 96.6 0.0051 1.1E-07 59.4 6.2 86 397-482 36-140 (504)
103 smart00028 TPR Tetratricopepti 96.5 0.0046 9.9E-08 37.3 4.1 33 449-481 2-34 (34)
104 PRK10370 formate-dependent nit 96.5 0.0066 1.4E-07 55.8 6.7 26 404-429 149-174 (198)
105 cd00189 TPR Tetratricopeptide 96.5 0.0063 1.4E-07 46.7 5.7 65 401-480 36-100 (100)
106 PF13176 TPR_7: Tetratricopept 96.5 0.0021 4.5E-08 41.3 2.3 29 450-478 1-29 (36)
107 KOG1125 TPR repeat-containing 96.5 0.0031 6.8E-08 64.7 4.5 69 405-488 436-504 (579)
108 PRK09782 bacteriophage N4 rece 96.4 0.0061 1.3E-07 69.1 6.9 72 400-486 644-715 (987)
109 COG3063 PilF Tfp pilus assembl 96.4 0.015 3.2E-07 53.4 7.8 79 395-488 31-109 (250)
110 KOG0624 dsRNA-activated protei 96.3 0.0023 5E-08 61.7 2.6 90 394-483 264-376 (504)
111 PF13174 TPR_6: Tetratricopept 96.3 0.0066 1.4E-07 37.6 3.7 32 450-481 2-33 (33)
112 PF14938 SNAP: Soluble NSF att 96.2 0.02 4.2E-07 55.8 8.7 72 397-477 112-184 (282)
113 PF03704 BTAD: Bacterial trans 96.2 0.019 4.2E-07 49.7 7.8 87 401-487 8-101 (146)
114 PRK10803 tol-pal system protei 96.2 0.015 3.3E-07 55.7 7.7 69 402-482 183-251 (263)
115 PRK10803 tol-pal system protei 96.2 0.019 4.2E-07 55.1 8.2 70 402-483 145-215 (263)
116 KOG1173 Anaphase-promoting com 96.1 0.0097 2.1E-07 61.0 5.9 67 401-482 457-523 (611)
117 KOG1173 Anaphase-promoting com 96.1 0.0082 1.8E-07 61.6 5.3 76 401-484 416-491 (611)
118 PRK11447 cellulose synthase su 96.1 0.0062 1.3E-07 71.2 5.1 71 402-487 354-424 (1157)
119 COG4105 ComL DNA uptake lipopr 96.1 0.014 3E-07 54.7 6.3 81 398-490 33-113 (254)
120 KOG2076 RNA polymerase III tra 96.0 0.012 2.5E-07 63.5 5.9 78 397-488 412-489 (895)
121 KOG1125 TPR repeat-containing 95.9 0.0047 1E-07 63.5 2.6 62 404-480 469-530 (579)
122 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.07 1.5E-06 40.4 8.2 68 398-477 5-72 (80)
123 PRK11447 cellulose synthase su 95.9 0.0079 1.7E-07 70.3 4.9 73 401-488 463-535 (1157)
124 KOG1128 Uncharacterized conser 95.9 0.0071 1.5E-07 63.7 3.8 75 401-490 487-561 (777)
125 CHL00033 ycf3 photosystem I as 95.9 0.031 6.7E-07 49.7 7.5 76 399-482 72-154 (168)
126 PRK15179 Vi polysaccharide bio 95.9 0.0077 1.7E-07 65.6 4.2 80 397-491 84-163 (694)
127 PLN02789 farnesyltranstransfer 95.8 0.011 2.5E-07 58.4 5.0 47 444-490 138-184 (320)
128 KOG4340 Uncharacterized conser 95.8 0.0079 1.7E-07 57.0 3.5 65 398-477 143-207 (459)
129 PF13431 TPR_17: Tetratricopep 95.8 0.0045 9.7E-08 39.1 1.2 34 421-469 1-34 (34)
130 PF06552 TOM20_plant: Plant sp 95.8 0.016 3.4E-07 51.3 4.9 61 413-490 49-120 (186)
131 PRK12370 invasion protein regu 95.7 0.0054 1.2E-07 65.8 2.3 64 411-489 316-379 (553)
132 PF13429 TPR_15: Tetratricopep 95.7 0.011 2.3E-07 57.5 4.2 89 400-488 147-254 (280)
133 PRK15174 Vi polysaccharide exp 95.7 0.012 2.5E-07 64.5 4.8 67 401-482 286-352 (656)
134 TIGR03302 OM_YfiO outer membra 95.7 0.026 5.6E-07 53.1 6.7 72 401-484 72-151 (235)
135 PF12968 DUF3856: Domain of Un 95.6 0.16 3.5E-06 41.6 9.8 77 398-477 8-84 (144)
136 PLN02789 farnesyltranstransfer 95.6 0.015 3.2E-07 57.6 4.7 63 409-486 47-110 (320)
137 KOG2003 TPR repeat-containing 95.5 0.0066 1.4E-07 60.4 1.9 29 400-428 491-519 (840)
138 PF12688 TPR_5: Tetratrico pep 95.4 0.036 7.7E-07 46.3 5.6 67 402-480 4-70 (120)
139 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.009 2E-07 60.5 2.3 48 443-490 70-120 (453)
140 PRK15174 Vi polysaccharide exp 95.3 0.016 3.5E-07 63.4 4.3 41 447-487 283-323 (656)
141 KOG1840 Kinesin light chain [C 95.2 0.084 1.8E-06 55.2 8.9 75 397-478 323-397 (508)
142 KOG4648 Uncharacterized conser 95.2 0.061 1.3E-06 52.1 7.1 64 404-482 136-199 (536)
143 PF10952 DUF2753: Protein of u 95.2 0.21 4.6E-06 41.1 9.2 81 402-482 4-88 (140)
144 PF13374 TPR_10: Tetratricopep 95.1 0.036 7.8E-07 36.2 4.0 31 448-478 2-32 (42)
145 TIGR02917 PEP_TPR_lipo putativ 95.1 0.03 6.6E-07 62.9 5.8 72 399-485 22-93 (899)
146 COG4785 NlpI Lipoprotein NlpI, 95.0 0.039 8.4E-07 50.2 4.8 104 371-492 40-143 (297)
147 KOG1126 DNA-binding cell divis 95.0 0.018 4E-07 60.1 3.1 83 400-482 422-523 (638)
148 PRK10049 pgaA outer membrane p 94.9 0.029 6.2E-07 62.7 4.9 85 402-487 52-155 (765)
149 PF13424 TPR_12: Tetratricopep 94.8 0.051 1.1E-06 41.3 4.6 32 446-477 3-34 (78)
150 TIGR02917 PEP_TPR_lipo putativ 94.8 0.047 1E-06 61.4 6.1 91 398-488 124-233 (899)
151 PF13432 TPR_16: Tetratricopep 94.7 0.013 2.8E-07 42.9 1.0 38 452-489 1-38 (65)
152 PRK11788 tetratricopeptide rep 94.7 0.087 1.9E-06 53.5 7.3 34 449-482 250-283 (389)
153 PF09976 TPR_21: Tetratricopep 94.6 0.19 4E-06 43.5 8.2 62 400-473 49-110 (145)
154 PF09295 ChAPs: ChAPs (Chs5p-A 94.5 0.089 1.9E-06 53.4 6.8 64 399-477 234-297 (395)
155 KOG1130 Predicted G-alpha GTPa 94.5 0.037 8.1E-07 54.8 3.9 75 394-477 190-264 (639)
156 COG4783 Putative Zn-dependent 94.5 0.045 9.7E-07 55.5 4.5 69 405-488 346-414 (484)
157 PF07719 TPR_2: Tetratricopept 94.5 0.085 1.8E-06 32.7 4.3 29 400-428 2-30 (34)
158 PRK10049 pgaA outer membrane p 94.5 0.069 1.5E-06 59.7 6.5 69 403-486 363-431 (765)
159 KOG3060 Uncharacterized conser 94.5 0.047 1E-06 50.9 4.1 77 399-490 154-233 (289)
160 KOG2002 TPR-containing nuclear 94.4 0.062 1.3E-06 58.7 5.5 83 401-488 454-536 (1018)
161 PRK11788 tetratricopeptide rep 94.4 0.13 2.7E-06 52.3 7.7 87 401-487 109-219 (389)
162 KOG2002 TPR-containing nuclear 94.4 0.036 7.7E-07 60.4 3.6 79 400-491 681-759 (1018)
163 PF00515 TPR_1: Tetratricopept 94.3 0.1 2.2E-06 32.5 4.3 30 399-428 1-30 (34)
164 KOG1155 Anaphase-promoting com 94.3 0.044 9.6E-07 55.1 3.8 92 398-489 363-473 (559)
165 KOG1155 Anaphase-promoting com 94.2 0.059 1.3E-06 54.3 4.5 69 405-488 336-404 (559)
166 PF12862 Apc5: Anaphase-promot 94.1 0.32 7E-06 38.6 7.9 64 409-478 8-71 (94)
167 PF14938 SNAP: Soluble NSF att 93.9 0.24 5.2E-06 48.2 8.3 32 446-477 112-144 (282)
168 KOG1126 DNA-binding cell divis 93.8 0.046 1E-06 57.2 3.1 73 401-488 491-563 (638)
169 COG1729 Uncharacterized protei 93.8 0.19 4.1E-06 47.6 6.9 72 401-484 143-214 (262)
170 PF13176 TPR_7: Tetratricopept 93.8 0.13 2.7E-06 32.8 4.0 27 402-428 2-28 (36)
171 KOG0547 Translocase of outer m 93.7 0.12 2.5E-06 52.6 5.6 96 396-491 323-437 (606)
172 PRK10153 DNA-binding transcrip 93.6 0.2 4.4E-06 53.0 7.5 63 405-483 426-488 (517)
173 PF10300 DUF3808: Protein of u 93.4 0.14 3.1E-06 53.6 5.9 78 402-491 270-347 (468)
174 KOG1174 Anaphase-promoting com 93.3 0.22 4.7E-06 49.7 6.6 69 401-485 440-508 (564)
175 PRK14574 hmsH outer membrane p 93.2 0.17 3.6E-06 56.5 6.4 90 398-487 33-141 (822)
176 PF08631 SPO22: Meiosis protei 93.1 0.44 9.5E-06 46.3 8.5 87 389-477 25-112 (278)
177 KOG4162 Predicted calmodulin-b 93.1 0.12 2.5E-06 55.2 4.6 84 399-482 684-788 (799)
178 PF10602 RPN7: 26S proteasome 92.9 0.72 1.6E-05 41.4 9.0 69 397-477 34-102 (177)
179 cd02677 MIT_SNX15 MIT: domain 92.7 0.79 1.7E-05 34.7 7.6 60 396-455 3-63 (75)
180 cd02683 MIT_1 MIT: domain cont 92.7 0.64 1.4E-05 35.4 7.0 61 397-457 4-65 (77)
181 COG1729 Uncharacterized protei 92.5 0.45 9.7E-06 45.1 7.3 72 401-484 180-251 (262)
182 cd02682 MIT_AAA_Arch MIT: doma 92.4 1.2 2.6E-05 33.6 8.1 64 397-460 4-68 (75)
183 cd05804 StaR_like StaR_like; a 92.4 0.22 4.8E-06 49.8 5.6 26 404-429 119-144 (355)
184 KOG3364 Membrane protein invol 92.3 0.12 2.5E-06 43.5 2.8 39 447-485 70-108 (149)
185 cd02681 MIT_calpain7_1 MIT: do 92.2 0.92 2E-05 34.4 7.3 35 397-431 4-38 (76)
186 KOG1174 Anaphase-promoting com 92.1 0.36 7.8E-06 48.2 6.3 73 398-485 333-405 (564)
187 PF12968 DUF3856: Domain of Un 92.1 1.1 2.3E-05 37.0 7.9 70 404-477 60-129 (144)
188 cd02684 MIT_2 MIT: domain cont 91.9 0.84 1.8E-05 34.6 6.9 36 396-431 3-38 (75)
189 PF13429 TPR_15: Tetratricopep 91.8 0.15 3.3E-06 49.4 3.5 71 404-487 115-185 (280)
190 KOG3824 Huntingtin interacting 91.8 0.25 5.4E-06 47.3 4.7 80 396-490 113-192 (472)
191 PF04212 MIT: MIT (microtubule 91.8 0.79 1.7E-05 34.0 6.6 36 396-431 2-37 (69)
192 KOG1128 Uncharacterized conser 91.6 0.28 6.2E-06 52.2 5.3 75 401-490 521-595 (777)
193 PF04733 Coatomer_E: Coatomer 91.3 0.099 2.1E-06 51.0 1.5 42 448-489 201-242 (290)
194 PF13371 TPR_9: Tetratricopept 90.8 0.11 2.4E-06 38.7 1.1 35 455-489 2-36 (73)
195 cd02678 MIT_VPS4 MIT: domain c 90.7 1.4 3.1E-05 33.3 7.1 36 396-431 3-38 (75)
196 KOG0551 Hsp90 co-chaperone CNS 90.4 0.3 6.6E-06 47.3 3.8 65 404-483 124-188 (390)
197 cd05804 StaR_like StaR_like; a 90.3 0.84 1.8E-05 45.6 7.4 68 401-479 150-217 (355)
198 PRK14574 hmsH outer membrane p 90.2 0.33 7.2E-06 54.2 4.6 91 401-491 104-212 (822)
199 COG3947 Response regulator con 90.2 0.53 1.1E-05 44.9 5.2 72 419-490 244-324 (361)
200 PRK14720 transcript cleavage f 90.1 0.32 6.8E-06 54.2 4.2 39 450-488 118-156 (906)
201 PF06957 COPI_C: Coatomer (COP 89.9 1.5 3.3E-05 44.7 8.5 88 395-482 200-334 (422)
202 cd02656 MIT MIT: domain contai 89.8 2.2 4.8E-05 32.2 7.6 37 396-432 3-39 (75)
203 KOG1129 TPR repeat-containing 89.8 0.87 1.9E-05 44.2 6.3 85 405-489 229-331 (478)
204 PF14559 TPR_19: Tetratricopep 89.6 0.13 2.8E-06 37.7 0.6 32 458-489 1-32 (68)
205 KOG2796 Uncharacterized conser 89.2 0.36 7.9E-06 45.3 3.3 64 403-481 256-319 (366)
206 COG4235 Cytochrome c biogenesi 89.1 0.7 1.5E-05 44.4 5.2 85 398-482 155-261 (287)
207 PF13431 TPR_17: Tetratricopep 89.1 0.063 1.4E-06 33.8 -1.3 20 471-490 2-21 (34)
208 PF03704 BTAD: Bacterial trans 89.0 1.9 4E-05 37.1 7.6 73 387-474 48-122 (146)
209 KOG3785 Uncharacterized conser 89.0 1.5 3.2E-05 43.1 7.3 66 402-482 154-219 (557)
210 PRK15331 chaperone protein Sic 88.6 0.7 1.5E-05 40.6 4.4 61 405-481 77-137 (165)
211 PF13525 YfiO: Outer membrane 88.6 2 4.3E-05 39.5 7.8 71 401-483 44-125 (203)
212 KOG2076 RNA polymerase III tra 88.4 0.94 2E-05 49.4 6.1 91 399-489 139-248 (895)
213 cd02679 MIT_spastin MIT: domai 88.3 4.6 0.0001 30.9 8.2 67 396-462 5-77 (79)
214 PF13181 TPR_8: Tetratricopept 87.8 1.2 2.7E-05 27.3 4.2 29 400-428 2-30 (34)
215 smart00745 MIT Microtubule Int 87.7 5 0.00011 30.3 8.3 38 395-432 4-41 (77)
216 PF13428 TPR_14: Tetratricopep 87.6 0.8 1.7E-05 30.5 3.4 28 402-429 4-31 (44)
217 KOG2376 Signal recognition par 87.5 3.3 7.1E-05 43.4 9.1 80 402-481 178-257 (652)
218 PF11817 Foie-gras_1: Foie gra 87.5 2 4.3E-05 40.9 7.3 65 403-476 182-246 (247)
219 cd02680 MIT_calpain7_2 MIT: do 87.4 3.4 7.3E-05 31.3 6.9 35 397-431 4-38 (75)
220 KOG1156 N-terminal acetyltrans 87.3 0.31 6.8E-06 51.2 1.8 61 411-486 87-147 (700)
221 PF13512 TPR_18: Tetratricopep 86.9 2.1 4.5E-05 36.7 6.3 69 402-482 50-133 (142)
222 KOG1129 TPR repeat-containing 86.9 0.36 7.9E-06 46.7 1.8 40 448-487 395-434 (478)
223 KOG1130 Predicted G-alpha GTPa 86.4 2 4.4E-05 43.0 6.6 66 399-475 17-82 (639)
224 PF09976 TPR_21: Tetratricopep 86.4 7.1 0.00015 33.5 9.6 76 394-481 6-81 (145)
225 PF06552 TOM20_plant: Plant sp 86.2 0.85 1.9E-05 40.6 3.6 59 415-488 7-75 (186)
226 KOG0376 Serine-threonine phosp 85.8 0.54 1.2E-05 47.9 2.5 66 405-485 44-109 (476)
227 PF09295 ChAPs: ChAPs (Chs5p-A 85.7 0.94 2E-05 46.1 4.2 65 410-489 211-275 (395)
228 PF13374 TPR_10: Tetratricopep 85.7 1.9 4.1E-05 27.7 4.4 33 399-431 2-34 (42)
229 COG5010 TadD Flp pilus assembl 85.5 1.2 2.7E-05 41.8 4.5 66 401-481 136-201 (257)
230 PF12569 NARP1: NMDA receptor- 85.5 3.5 7.6E-05 43.6 8.4 60 409-483 14-73 (517)
231 COG2956 Predicted N-acetylgluc 85.0 4.2 9.1E-05 39.6 7.8 87 398-484 106-216 (389)
232 KOG1586 Protein required for f 85.0 5.4 0.00012 37.1 8.2 75 398-481 111-187 (288)
233 KOG3785 Uncharacterized conser 84.4 0.79 1.7E-05 44.9 2.8 54 406-474 64-117 (557)
234 KOG2376 Signal recognition par 84.2 5 0.00011 42.1 8.5 72 402-476 113-203 (652)
235 PRK14720 transcript cleavage f 84.0 2.1 4.6E-05 48.0 6.2 85 377-477 88-178 (906)
236 PF12688 TPR_5: Tetratrico pep 83.3 7.7 0.00017 32.3 8.0 66 400-477 39-104 (120)
237 PF10516 SHNi-TPR: SHNi-TPR; 83.2 2.3 4.9E-05 27.5 3.7 30 449-478 2-31 (38)
238 PRK10866 outer membrane biogen 82.8 4 8.8E-05 38.7 6.9 69 402-482 72-158 (243)
239 COG4976 Predicted methyltransf 82.2 2.2 4.9E-05 39.4 4.6 61 407-482 3-63 (287)
240 COG4700 Uncharacterized protei 81.6 4.3 9.2E-05 36.5 6.0 66 401-480 91-156 (251)
241 KOG1941 Acetylcholine receptor 80.6 6.2 0.00013 39.1 7.2 81 398-478 5-113 (518)
242 smart00028 TPR Tetratricopepti 80.5 2.2 4.8E-05 24.6 3.0 28 401-428 3-30 (34)
243 KOG1585 Protein required for f 80.4 7.3 0.00016 36.6 7.3 30 402-431 113-142 (308)
244 PF13174 TPR_6: Tetratricopept 77.5 4.7 0.0001 24.2 3.8 29 401-429 2-30 (33)
245 PF07721 TPR_4: Tetratricopept 77.5 3.2 6.9E-05 24.1 2.8 24 449-472 2-25 (26)
246 TIGR00540 hemY_coli hemY prote 77.3 5.8 0.00013 40.8 6.6 92 395-486 80-191 (409)
247 COG2956 Predicted N-acetylgluc 77.3 5.4 0.00012 38.9 5.7 32 448-479 249-280 (389)
248 KOG2796 Uncharacterized conser 77.1 4.4 9.5E-05 38.4 4.9 45 446-490 250-294 (366)
249 PF00244 14-3-3: 14-3-3 protei 77.0 7 0.00015 36.9 6.4 56 415-477 142-198 (236)
250 KOG0739 AAA+-type ATPase [Post 76.1 8.3 0.00018 37.3 6.5 38 394-431 5-42 (439)
251 PRK10747 putative protoheme IX 75.6 14 0.00029 37.9 8.7 92 394-485 79-190 (398)
252 PF04733 Coatomer_E: Coatomer 74.8 4.5 9.8E-05 39.5 4.7 66 402-482 204-270 (290)
253 TIGR03504 FimV_Cterm FimV C-te 73.8 3.3 7.2E-05 27.7 2.4 27 451-477 2-28 (44)
254 PRK10747 putative protoheme IX 71.7 16 0.00034 37.4 8.0 62 401-478 330-391 (398)
255 PRK10941 hypothetical protein; 70.2 12 0.00027 36.0 6.4 66 404-484 186-251 (269)
256 KOG0292 Vesicle coat complex C 70.1 27 0.00059 38.7 9.3 87 395-481 987-1117(1202)
257 PRK04841 transcriptional regul 69.5 21 0.00045 40.8 9.3 64 405-477 497-560 (903)
258 TIGR00540 hemY_coli hemY prote 68.7 19 0.00041 37.0 7.9 70 405-482 83-152 (409)
259 PRK10941 hypothetical protein; 68.7 8.9 0.00019 36.9 5.1 39 444-482 177-215 (269)
260 COG0457 NrfG FOG: TPR repeat [ 68.6 24 0.00051 31.0 7.9 33 448-480 202-234 (291)
261 PF07720 TPR_3: Tetratricopept 68.4 15 0.00033 23.3 4.5 31 451-481 4-36 (36)
262 PF12569 NARP1: NMDA receptor- 68.1 9.9 0.00021 40.3 5.7 61 406-481 201-261 (517)
263 KOG0686 COP9 signalosome, subu 67.5 18 0.00039 36.5 6.9 64 402-477 153-216 (466)
264 PF04184 ST7: ST7 protein; In 66.7 30 0.00066 35.9 8.5 92 389-480 181-291 (539)
265 PF10255 Paf67: RNA polymerase 66.4 6.2 0.00013 40.2 3.6 56 422-477 138-193 (404)
266 KOG1127 TPR repeat-containing 66.1 9.6 0.00021 42.6 5.1 68 402-484 5-73 (1238)
267 KOG3060 Uncharacterized conser 65.9 24 0.00051 33.4 6.9 35 448-482 154-188 (289)
268 PF08631 SPO22: Meiosis protei 65.6 18 0.00039 35.0 6.6 62 409-477 3-65 (278)
269 KOG3081 Vesicle coat complex C 65.4 11 0.00024 35.8 4.7 40 448-487 207-246 (299)
270 KOG4162 Predicted calmodulin-b 65.3 13 0.00028 40.3 5.8 76 400-487 680-759 (799)
271 KOG1586 Protein required for f 65.0 38 0.00082 31.8 8.0 73 395-477 29-102 (288)
272 KOG4340 Uncharacterized conser 65.0 5.7 0.00012 38.3 2.8 40 448-489 44-83 (459)
273 PF02259 FAT: FAT domain; Int 63.8 20 0.00044 35.4 6.9 88 402-489 187-299 (352)
274 KOG2610 Uncharacterized conser 61.6 32 0.0007 33.9 7.2 82 400-481 104-208 (491)
275 PF09986 DUF2225: Uncharacteri 61.5 20 0.00043 33.2 5.8 69 402-479 128-196 (214)
276 PF08969 USP8_dimer: USP8 dime 61.4 31 0.00068 28.3 6.4 48 387-434 26-73 (115)
277 KOG2471 TPR repeat-containing 61.1 4.4 9.6E-05 41.6 1.5 94 396-489 280-376 (696)
278 PF10516 SHNi-TPR: SHNi-TPR; 61.1 17 0.00037 23.4 3.7 28 403-430 5-32 (38)
279 smart00101 14_3_3 14-3-3 homol 59.6 34 0.00074 32.4 7.0 55 415-476 144-199 (244)
280 PRK11906 transcriptional regul 59.3 23 0.00049 36.5 6.1 64 406-484 345-408 (458)
281 PRK04841 transcriptional regul 58.4 40 0.00086 38.5 8.8 67 404-479 696-762 (903)
282 PRK10153 DNA-binding transcrip 58.1 63 0.0014 34.3 9.6 36 449-485 421-456 (517)
283 KOG1156 N-terminal acetyltrans 58.0 8.4 0.00018 40.9 2.9 82 402-486 10-113 (700)
284 KOG1941 Acetylcholine receptor 57.5 13 0.00028 36.9 3.8 66 405-479 128-193 (518)
285 KOG1127 TPR repeat-containing 56.3 5.5 0.00012 44.4 1.3 68 405-487 568-635 (1238)
286 PF15469 Sec5: Exocyst complex 56.2 51 0.0011 29.5 7.4 73 406-481 93-172 (182)
287 KOG2114 Vacuolar assembly/sort 55.9 42 0.0009 37.1 7.6 34 398-431 367-400 (933)
288 COG4785 NlpI Lipoprotein NlpI, 54.0 7.2 0.00016 35.9 1.4 71 397-482 97-167 (297)
289 COG2976 Uncharacterized protei 53.5 68 0.0015 29.2 7.4 60 401-472 91-150 (207)
290 COG4783 Putative Zn-dependent 53.1 17 0.00036 37.5 4.0 35 448-482 340-374 (484)
291 PF06069 PerC: PerC transcript 50.2 1.1E+02 0.0024 24.0 7.2 26 405-430 6-31 (90)
292 PF04184 ST7: ST7 protein; In 49.9 52 0.0011 34.3 6.9 58 403-473 263-320 (539)
293 KOG4555 TPR repeat-containing 49.8 76 0.0017 27.0 6.7 73 397-480 75-147 (175)
294 PF11207 DUF2989: Protein of u 49.7 46 0.001 30.4 5.9 50 408-468 149-198 (203)
295 KOG4507 Uncharacterized conser 47.8 42 0.0009 35.6 5.9 33 450-482 678-710 (886)
296 PF10938 YfdX: YfdX protein; 47.4 1.1E+02 0.0024 26.7 7.9 72 397-476 73-145 (155)
297 COG0457 NrfG FOG: TPR repeat [ 47.3 91 0.002 27.0 7.8 23 457-479 139-161 (291)
298 COG4235 Cytochrome c biogenesi 46.8 70 0.0015 31.0 6.9 31 401-431 229-259 (287)
299 KOG0276 Vesicle coat complex C 46.5 49 0.0011 35.3 6.2 76 399-474 666-747 (794)
300 PF01535 PPR: PPR repeat; Int 45.2 33 0.00072 19.9 3.1 28 450-477 2-29 (31)
301 KOG0985 Vesicle coat protein c 44.5 42 0.00091 38.0 5.6 62 267-330 266-336 (1666)
302 KOG4642 Chaperone-dependent E3 43.7 66 0.0014 30.3 6.0 60 403-477 48-107 (284)
303 COG5159 RPN6 26S proteasome re 43.5 52 0.0011 31.7 5.4 58 403-467 7-64 (421)
304 PF04781 DUF627: Protein of un 43.1 54 0.0012 26.8 4.8 25 405-429 2-26 (111)
305 PF07720 TPR_3: Tetratricopept 43.1 64 0.0014 20.4 4.2 23 401-423 3-25 (36)
306 KOG1585 Protein required for f 42.3 1.3E+02 0.0028 28.6 7.6 34 399-432 30-64 (308)
307 PF09670 Cas_Cas02710: CRISPR- 41.9 1.3E+02 0.0028 30.6 8.5 67 398-477 130-198 (379)
308 PF09613 HrpB1_HrpK: Bacterial 41.2 68 0.0015 28.2 5.4 20 405-424 50-69 (160)
309 COG3629 DnrI DNA-binding trans 40.8 41 0.00089 32.5 4.4 52 438-489 143-194 (280)
310 PF14561 TPR_20: Tetratricopep 40.6 68 0.0015 25.1 4.9 37 446-482 20-56 (90)
311 PF13812 PPR_3: Pentatricopept 40.0 62 0.0013 19.2 3.8 28 449-476 2-29 (34)
312 KOG2709 Uncharacterized conser 38.9 1.1E+02 0.0023 31.2 7.0 81 394-477 17-97 (560)
313 PF04053 Coatomer_WDAD: Coatom 38.3 1.4E+02 0.0031 31.1 8.2 71 400-474 348-428 (443)
314 PF08424 NRDE-2: NRDE-2, neces 38.2 1E+02 0.0022 30.5 7.0 70 410-479 113-185 (321)
315 COG3071 HemY Uncharacterized e 38.1 1.1E+02 0.0024 30.8 7.0 62 400-477 329-390 (400)
316 PF09986 DUF2225: Uncharacteri 37.8 1.4E+02 0.003 27.6 7.4 63 408-478 86-155 (214)
317 PF10373 EST1_DNA_bind: Est1 D 37.7 39 0.00085 32.2 3.9 47 418-479 1-47 (278)
318 KOG3617 WD40 and TPR repeat-co 36.6 2.8E+02 0.0061 31.1 10.0 73 402-474 1082-1171(1416)
319 PRK11906 transcriptional regul 36.3 36 0.00078 35.1 3.4 44 445-488 335-378 (458)
320 PF02259 FAT: FAT domain; Int 35.6 1.5E+02 0.0032 29.2 7.9 80 394-488 247-350 (352)
321 PF04781 DUF627: Protein of un 35.0 91 0.002 25.5 4.9 53 411-478 56-108 (111)
322 KOG1308 Hsp70-interacting prot 34.7 18 0.00038 35.7 0.9 65 399-478 148-212 (377)
323 TIGR00756 PPR pentatricopeptid 33.7 84 0.0018 18.4 3.7 28 450-477 2-29 (35)
324 cd02682 MIT_AAA_Arch MIT: doma 32.8 98 0.0021 23.4 4.4 28 449-476 7-34 (75)
325 COG3947 Response regulator con 32.0 2.5E+02 0.0054 27.4 7.9 74 384-472 262-337 (361)
326 PF04010 DUF357: Protein of un 30.5 1.7E+02 0.0037 22.1 5.5 39 391-429 27-65 (75)
327 KOG4563 Cell cycle-regulated h 29.3 1.9E+02 0.0041 29.0 6.9 38 394-431 36-73 (400)
328 PF05843 Suf: Suppressor of fo 28.8 1.1E+02 0.0023 29.6 5.3 63 412-489 49-113 (280)
329 COG2912 Uncharacterized conser 28.4 1.1E+02 0.0025 29.3 5.1 40 444-483 177-216 (269)
330 PF04910 Tcf25: Transcriptiona 28.2 2.7E+02 0.0058 28.1 8.2 83 399-482 40-138 (360)
331 KOG3807 Predicted membrane pro 28.2 3.2E+02 0.0069 27.1 8.1 89 389-477 197-304 (556)
332 KOG3783 Uncharacterized conser 28.0 66 0.0014 33.8 3.7 68 409-490 277-344 (546)
333 PF07079 DUF1347: Protein of u 27.7 2.7E+02 0.0059 28.9 7.8 59 399-473 462-520 (549)
334 PF14863 Alkyl_sulf_dimr: Alky 27.4 84 0.0018 27.0 3.8 37 449-485 71-107 (141)
335 KOG1915 Cell cycle control pro 27.3 45 0.00099 34.5 2.4 63 410-487 84-146 (677)
336 PF11817 Foie-gras_1: Foie gra 27.2 1.9E+02 0.0042 27.2 6.7 52 417-477 156-207 (247)
337 PF15469 Sec5: Exocyst complex 27.1 4.4E+02 0.0096 23.3 8.9 68 398-478 48-116 (182)
338 PLN03081 pentatricopeptide (PP 26.9 78 0.0017 35.0 4.4 35 449-483 495-529 (697)
339 PF03745 DUF309: Domain of unk 25.8 2.1E+02 0.0046 20.6 5.1 56 404-470 4-61 (62)
340 PF09122 DUF1930: Domain of un 25.6 98 0.0021 22.3 3.1 24 328-351 34-57 (68)
341 PF14863 Alkyl_sulf_dimr: Alky 25.5 2.6E+02 0.0057 24.0 6.4 50 399-456 70-119 (141)
342 COG3118 Thioredoxin domain-con 25.4 1.6E+02 0.0034 28.7 5.5 55 401-470 136-190 (304)
343 COG4455 ImpE Protein of avirul 25.0 1.4E+02 0.0031 27.8 4.9 65 404-483 6-70 (273)
344 KOG1550 Extracellular protein 25.0 1.1E+02 0.0023 32.9 5.0 68 398-487 330-401 (552)
345 PF05053 Menin: Menin; InterP 24.6 1.2E+02 0.0026 32.2 4.9 30 404-433 323-352 (618)
346 PF14853 Fis1_TPR_C: Fis1 C-te 24.5 2.5E+02 0.0054 19.5 5.7 25 404-428 6-30 (53)
347 PF07219 HemY_N: HemY protein 24.0 2.7E+02 0.0059 22.4 6.1 36 393-428 53-88 (108)
348 PF04212 MIT: MIT (microtubule 23.9 1.7E+02 0.0036 21.3 4.4 25 453-477 10-34 (69)
349 KOG2300 Uncharacterized conser 23.7 3.4E+02 0.0073 28.5 7.7 66 411-477 287-352 (629)
350 PF10666 Phage_Gp14: Phage pro 23.6 3.4E+02 0.0073 22.6 6.2 74 404-477 19-105 (140)
351 KOG0495 HAT repeat protein [RN 23.4 1.1E+02 0.0024 33.1 4.4 77 410-486 764-855 (913)
352 TIGR02710 CRISPR-associated pr 23.2 3.6E+02 0.0077 27.4 7.8 64 400-473 131-196 (380)
353 KOG2300 Uncharacterized conser 23.1 6.3E+02 0.014 26.6 9.4 82 392-482 40-123 (629)
354 PF01272 GreA_GreB: Transcript 22.8 84 0.0018 23.6 2.7 23 93-115 43-65 (77)
355 COG4105 ComL DNA uptake lipopr 22.8 4.8E+02 0.011 24.8 8.1 72 398-482 166-237 (254)
356 PF13838 Clathrin_H_link: Clat 22.5 1.1E+02 0.0024 22.5 3.0 24 401-424 8-31 (66)
357 COG1278 CspC Cold shock protei 22.4 1.5E+02 0.0032 21.9 3.7 42 278-325 12-55 (67)
358 cd00280 TRFH Telomeric Repeat 22.2 2.1E+02 0.0045 25.9 5.2 37 447-484 110-146 (200)
359 KOG2396 HAT (Half-A-TPR) repea 21.7 2.5E+02 0.0054 29.5 6.3 54 417-485 89-142 (568)
360 PF12854 PPR_1: PPR repeat 21.5 1.9E+02 0.004 17.7 3.6 26 448-473 7-32 (34)
361 KOG3824 Huntingtin interacting 21.1 1.1E+02 0.0024 29.9 3.6 40 448-487 116-155 (472)
362 COG2912 Uncharacterized conser 21.1 1.2E+02 0.0026 29.1 3.8 61 408-483 190-250 (269)
363 PRK00226 greA transcription el 20.9 1.1E+02 0.0023 26.8 3.3 24 92-115 122-145 (157)
364 KOG1839 Uncharacterized protei 20.4 1.6E+02 0.0034 34.5 5.1 73 397-477 930-1002(1236)
365 PHA02122 hypothetical protein 20.2 1.6E+02 0.0036 20.6 3.3 20 54-74 39-58 (65)
366 KOG4509 Uncharacterized conser 20.1 1.6E+02 0.0035 26.1 4.1 37 395-431 11-47 (247)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-54 Score=412.77 Aligned_cols=293 Identities=48% Similarity=0.764 Sum_probs=271.0
Q ss_pred cCcccCCCCCcceEEEEEEEEcCCCcEEeee---cCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCC
Q 011164 162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238 (492)
Q Consensus 162 ~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~---~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~ 238 (492)
.|+|+.+|..|+.|.+||++++.+|+.|+++ +++.|.+|.+.++.+|..++.+|+.| +.+.|
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~g--------------~~~~p- 66 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKKG--------------EAGSP- 66 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCcccccccccccccccc--------------ccCCC-
Confidence 5788999999999999999999999999987 58999999999999999999999983 33332
Q ss_pred CCCCCCCCCCCeEEEEEEeecccceeeeeCCccEEEEEEecCCC-CCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCccc
Q 011164 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL 317 (492)
Q Consensus 239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~g-~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~ 317 (492)
..||++++|.|+|+|. |++|+|+|+++|.| .++|..|.+|.+||.+.+.|+ +|+++. ..
T Consensus 67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~-----~~ 126 (397)
T KOG0543|consen 67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE-----LR 126 (397)
T ss_pred ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc-----cc
Confidence 4699999999999997 99999999999999 799999999999999999887 776542 33
Q ss_pred EEEEcCC-cccchhHHHHHhccCcCcEEEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee-ecccCCCCChHHH
Q 011164 318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK 395 (492)
Q Consensus 318 ~~~~lg~-~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~-~~~~~~~~~~~e~ 395 (492)
+.|.+|+ ..++.||+.||+.|++||++.|+|+|+||||..+.. .+.|||+++|.|+|+|++|. +....|.|..+++
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8888898 589999999999999999999999999999965544 37899999999999999999 8899999999999
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
++.|...|++||.+||+++|..|+..|++|+++|+++.+.++++.+...+++..||+|+|+||+|+++|..|+..|++||
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccceeeeecc
Q 011164 476 QQKKFLLLPIFNIYAR 491 (492)
Q Consensus 476 ~~dp~n~KA~~r~~~~ 491 (492)
+++|+|+|||||+--|
T Consensus 285 e~~~~N~KALyRrG~A 300 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQA 300 (397)
T ss_pred hcCCCchhHHHHHHHH
Confidence 9999999999997543
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-32 Score=265.05 Aligned_cols=319 Identities=39% Similarity=0.606 Sum_probs=237.4
Q ss_pred EcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCC
Q 011164 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (492)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~ 124 (492)
++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++..|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 79999999999999999999999998 67777
Q ss_pred CCCCCCCCceEEEEEEEEEeecccccccccceeeeeecCcc-cCCCCCcceEEEEEEEEcCCCcEEeee-cCeeeEeCC-
Q 011164 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD- 201 (492)
Q Consensus 125 ~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~l~~g~~~~~~-~~~~~~~g~- 201 (492)
++.+|++.++.|+|+|+ |++++++|+..|.| ..+|..+..|.|||.+.+.++ +|+++ ..+.|..|+
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 88999999999999997 88999999999999 899999999999999999998 66665 556888888
Q ss_pred CCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCccEEEEEEecCC
Q 011164 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (492)
Q Consensus 202 ~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~v~k~il~~G~ 281 (492)
..++.||+.++..|++||.+.|+|+|.|+||+.+.. ...|||+++|.|+|+|++|....+....
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~------------ 198 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWK------------ 198 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccccc------------
Confidence 469999999999999999999999999999944332 3689999999999999999632111000
Q ss_pred CCCCCCCCCEEEEEEEEEE-cCCcEEEEcCCCCCcccEEEEcCCc-ccchhHHHHHhccCcCcEEEEEECCCCccCCCcc
Q 011164 282 GFERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (492)
Q Consensus 282 g~~~p~~g~~V~v~y~~~~-~~g~~~d~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~ 359 (492)
.++..++.+..+. ..|+.+ |.-|.- .-..-.+.|+.-|. |.
T Consensus 199 ------~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~--------------~~---- 241 (397)
T KOG0543|consen 199 ------MFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSFLE--------------YR---- 241 (397)
T ss_pred ------cchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHHhh--------------cc----
Confidence 0000000000000 012111 222210 11111222222110 00
Q ss_pred ccccccCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHH---HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC
Q 011164 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAG---KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436 (492)
Q Consensus 360 ~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~---~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~ 436 (492)
..+.. .+++...+. .+.+.+-.+.|.++|..|+..=.++|.+
T Consensus 242 --------------------------~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-------- 286 (397)
T KOG0543|consen 242 --------------------------RSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-------- 286 (397)
T ss_pred --------------------------ccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--------
Confidence 00000 111221111 2334455567889999999998888876
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 437 ~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
++-++..+.-++.|++.+++|+.|+.++.+|++++|+| ||.
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~ 327 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAA 327 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHH
Confidence 44568888999999999999999999999999999999 553
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=220.66 Aligned_cols=176 Identities=28% Similarity=0.472 Sum_probs=147.6
Q ss_pred eEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc---eeeeeCCccEE
Q 011164 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT---VSEITDDKKVI 273 (492)
Q Consensus 197 ~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~---~~d~~~d~~v~ 273 (492)
|++|.+.++++.+.++.+|+.||++.+.+||+++||..+-. ..-.+.|.+.++.... ......++.+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 46788999999999999999999999999999999954332 2234667777666532 23344456666
Q ss_pred EEEEecC-CCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCC
Q 011164 274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (492)
Q Consensus 274 k~il~~G-~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ 352 (492)
-.++++- .+..+...||.+.+||++.+.||++||||+ +.++|++|+||.+++|+||+++|.+||+||++.++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~--~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSY--SRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeec--cCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 6666552 266788999999999999999999999998 4779999999999999999999999999999999999999
Q ss_pred ccCCCccccccccCCCCccEEEEEEEeeeeeccc
Q 011164 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (492)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~ 386 (492)
|||++|.+ +.||++++|+|+|||+++.+.+.
T Consensus 150 gYG~~G~~---~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAP---PKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCC---CCCCCCeeEEEEEEEEEeecCCC
Confidence 99999986 45999999999999999997644
No 4
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-30 Score=229.02 Aligned_cols=221 Identities=23% Similarity=0.317 Sum_probs=186.5
Q ss_pred CCccEEEEEEecCCCCCCC--CCCCEEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcE
Q 011164 268 DDKKVIKKILKEGDGFERP--NEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343 (492)
Q Consensus 268 ~d~~v~k~il~~G~g~~~p--~~g~~V~v~y~~~~~~--g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~ 343 (492)
.-.++.|+|+..|+| .-| ..|.+|++||.....+ ++++|+|.. -+.|+++.+|.-.-++.||.+|.+|.++|.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev 84 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEV 84 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence 345799999999999 554 6799999999998865 578998874 789999999999999999999999999999
Q ss_pred EEEEECCCC--------------ccCC--------------------CccccccccCCCCccEEEEEEEeeeee----cc
Q 011164 344 ALLTIAPEY--------------AFGS--------------------AESQQELAVVPPNSTVHYEVELVSFEK----EK 385 (492)
Q Consensus 344 ~~i~ip~~~--------------~yg~--------------------~~~~~~~~~ip~~~~l~~~v~l~~~~~----~~ 385 (492)
+.|+|.-.. +-|. .|..+......--++|+|.|+|+.+.. ..
T Consensus 85 aqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~ 164 (329)
T KOG0545|consen 85 AQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR 164 (329)
T ss_pred HHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence 999986421 1111 111110111123368999999999996 46
Q ss_pred cCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHhHhHHHHHHHHhc
Q 011164 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLK 462 (492)
Q Consensus 386 ~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~---~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~ 462 (492)
++|.|+.+|++..+..++++||.+|++|+|++|..+|+.|+-.+... ....+.++.+++.+...+++|.|+|+++.+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 78999999999999999999999999999999999999999887653 456678999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164 463 DYKQAEKLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 463 ~~~~ai~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
+|.+++++|+.+|..+|.|+|||||++-|
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakA 273 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKA 273 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999999999999999999999998643
No 5
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=174.04 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.5
Q ss_pred CeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCc
Q 011164 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (492)
Q Consensus 38 g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ 117 (492)
|+.++++..|+|...|++||+|++||++.+.||+.||||.+++.|+.|.+|.+.+|+||++++..|.+||+++++|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (492)
Q Consensus 118 ayg~~~~~~~i~~~~~l~~~vel~~~ 143 (492)
|||..+.+..||+|++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999986
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-26 Score=172.59 Aligned_cols=107 Identities=37% Similarity=0.642 Sum_probs=101.1
Q ss_pred cEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECC
Q 011164 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP 350 (492)
Q Consensus 271 ~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~ 350 (492)
++.+.++.+|+|...|..|++|++||++.+.||+.|||+. +.+.|+.|.+|.|++|.||++++..|.+||++.+.|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence 4778999999999999999999999999999999999987 57899999999999999999999999999999999999
Q ss_pred CCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (492)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~ 382 (492)
++|||..|.+ ..|||+++|+|+|||+++.
T Consensus 80 d~aYG~~G~p---~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 80 DYAYGPRGHP---GGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccccCCCCCC---CccCCCcEEEEEEEEEecC
Confidence 9999999854 6899999999999999873
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=197.60 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.4
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (492)
Q Consensus 33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~ 112 (492)
..+++|++|++++.|+| ..|..++.|.+||++++.||++||||+++++|+.|.|| ++|+||.++|.+|++|++++++
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 56899999999999999 89999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (492)
Q Consensus 113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~ 143 (492)
|||++|||..+.+..||+|++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999987779999999999999986
No 8
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.4e-25 Score=187.61 Aligned_cols=169 Identities=32% Similarity=0.470 Sum_probs=136.7
Q ss_pred EEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeeccc---ccccccceeeeee
Q 011164 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD---ICKDGGIIKKILK 161 (492)
Q Consensus 85 f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~---~~~d~~~~k~i~~ 161 (492)
|.+|.++++++.+.++.+|..||++.+.+||+++||..+.. .-..+++.+.++....+.. ...+..+-..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 45788899999999999999999999999999999955432 2234566666555433211 1122333333333
Q ss_pred c-CcccCCCCCcceEEEEEEEEcCCCcEEeee----cCeeeEeCCCCccchHHHHHhccccCcEEEEEecCCCccCCCCC
Q 011164 162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (492)
Q Consensus 162 ~-g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~----~~~~~~~g~~~~~~~l~~~l~~m~~ge~~~i~vp~~~~~g~~~~ 236 (492)
. ..+..+...||.+.+||++.+.||++|+++ .|+.|.+|.+++++||+.+|.+|++||++.+.|||+|+||+.|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 2 336678889999999999999999999987 69999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEEeecccc
Q 011164 237 SASGNEGAVPPNATLQIALELVSWKT 262 (492)
Q Consensus 237 ~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (492)
+ ..||++++|.|+|+|+....
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 6 45999999999999998864
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4e-24 Score=187.92 Aligned_cols=107 Identities=41% Similarity=0.583 Sum_probs=100.5
Q ss_pred eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (492)
Q Consensus 267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i 346 (492)
+.++++.+++++.|.| ..|..+++|++||+|++.||++||+|+ ..++|+.|.|| ++|+||..+|.+|++|+++++
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~--~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l 172 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSY--DRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKL 172 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCcccccc--ccCCCceeecC--CeeehHHHHHhhCCCCceEEE
Confidence 3577899999999999 999999999999999999999999997 48899999999 999999999999999999999
Q ss_pred EECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (492)
Q Consensus 347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~ 381 (492)
+|||++|||..+.+ ..|||+++|+|+|+|+++
T Consensus 173 ~IP~~laYG~~g~~---g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 173 TIPPELAYGERGVP---GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred EeCchhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence 99999999999865 359999999999999987
No 10
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.87 E-value=1.5e-21 Score=178.40 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.4
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (492)
Q Consensus 33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~ 112 (492)
..+++|++|+++++|+| ..|..+|.|.+||++++.||++|++|+.++.|+.|.+| ++++||+++|.+|++|+++.|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 55899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (492)
Q Consensus 113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~ 143 (492)
||+++|||+.+.++.||++++|+|+|+|+++
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999986
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.85 E-value=1e-20 Score=168.71 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.4
Q ss_pred eecCCCeEEEEEEc--ccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEE
Q 011164 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (492)
Q Consensus 33 ~~~~~g~~~~il~~--G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~ 110 (492)
..+++|++|.++.. |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 45789999999977 566 67999999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011164 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (492)
Q Consensus 111 ~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~ 144 (492)
|++||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999985
No 12
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.8e-20 Score=169.41 Aligned_cols=108 Identities=49% Similarity=0.872 Sum_probs=103.3
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEec-CCCEEeecCCCCCcEE-EEcCCCcccHhHHHHhccCcCccEEE
Q 011164 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV 110 (492)
Q Consensus 33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~ss~~~~~p~~-f~lg~~~~~~gle~~l~~m~~Ge~~~ 110 (492)
.+.++||+|+-++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+.+|+||+.++.||++|++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 46899999999999999 899999999999999998 99999999874 8999 99999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011164 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (492)
Q Consensus 111 ~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~ 143 (492)
|+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999987 89999999999999876
No 13
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=6.4e-20 Score=167.63 Aligned_cols=107 Identities=34% Similarity=0.477 Sum_probs=98.8
Q ss_pred eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEE
Q 011164 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (492)
Q Consensus 267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i 346 (492)
..++++.++++++|.| ..|..+|.|.|||++++.||++||+++ ..+.|+.|.+| .+++||+.+|.+|++|+++.|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~--~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~ 173 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSV--ARGEPAEFPVN--GVIPGWIEALTLMPVGSKWEL 173 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEecc--CCCCCeEEEee--chhhHHHHHHcCCCCCCEEEE
Confidence 3477899999999999 799999999999999999999999986 35789999996 799999999999999999999
Q ss_pred EECCCCccCCCccccccccCCCCccEEEEEEEeee
Q 011164 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (492)
Q Consensus 347 ~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~ 381 (492)
+|||++|||..+.. ..|||+++|+|+|+|++|
T Consensus 174 ~IP~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 174 TIPHELAYGERGAG---ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EECHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence 99999999998864 579999999999999987
No 14
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.4e-20 Score=166.87 Aligned_cols=109 Identities=33% Similarity=0.495 Sum_probs=101.2
Q ss_pred eeCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEEcCCCCCcccEE-EEcCCcccchhHHHHHhccCcCcE
Q 011164 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFE-FKTDEEQVIDGLDRAVITMKKNEV 343 (492)
Q Consensus 266 ~~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~-~g~~~d~~~~~~~~~~~~-~~lg~~~~~~gle~~l~~m~~Ge~ 343 (492)
.+-.++++++-++-|+| +.|..|++|.+||.+++. +|++||++. ...|+. |.+|.+.+|+||+.++.+|++|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~---~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNF---GGKPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeeccc---CCCCccccccCCCCCCchHHHhhhhhccCCe
Confidence 34578999999999999 999999999999999998 899999884 678888 999999999999999999999999
Q ss_pred EEEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (492)
Q Consensus 344 ~~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~ 382 (492)
++|+|||.+|||..+.+ .|||+++|+|+|+|+.+.
T Consensus 192 RrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred eEEEeCccccccccCcC----cCCCCCcEEEEEEEEecC
Confidence 99999999999998875 599999999999999863
No 15
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.82 E-value=1.7e-19 Score=160.82 Aligned_cols=109 Identities=23% Similarity=0.331 Sum_probs=98.4
Q ss_pred eCCccEEEEEEec--CCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEE
Q 011164 267 TDDKKVIKKILKE--GDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (492)
Q Consensus 267 ~~d~~v~k~il~~--G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~ 344 (492)
..++|+.++++.. |+| ..|..||.|++||++++.||++|++++ ...|+.|.+|.+++++||+++|.+|++||++
T Consensus 66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~---~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEE---ELGPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCC---CCCCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 4567888888866 666 789999999999999999999999885 3459999999999999999999999999999
Q ss_pred EEEECCCCccCCCccccccccCCCCccEEEEEEEeeee
Q 011164 345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (492)
Q Consensus 345 ~i~ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~ 382 (492)
.|.+||++|||..+.. ..|||+++|+|+|+|++|.
T Consensus 142 ~~~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence 9999999999998764 5799999999999999985
No 16
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.80 E-value=5.1e-19 Score=167.53 Aligned_cols=109 Identities=50% Similarity=0.883 Sum_probs=102.6
Q ss_pred eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEE
Q 011164 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (492)
Q Consensus 33 ~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~ 112 (492)
..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ .+++||+++|.+|++|+++.|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 45899999999999999 78999999999999999999999999988899999996 6999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011164 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (492)
Q Consensus 113 i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~ 145 (492)
||++++||..+.+ .||+|++++|+|+|+++..
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence 9999999999865 7999999999999999875
No 17
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=1.4e-18 Score=140.21 Aligned_cols=94 Identities=39% Similarity=0.670 Sum_probs=86.3
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccc
Q 011164 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (492)
Q Consensus 282 g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~ 361 (492)
|+.+|+.||.|++||++++.+|++|++++ ....|++|.+|.+.+++||+.+|.+|++||+++|.+|++++||..+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~--~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSY--QEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETT--TTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEee--ecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 45679999999999999999999999985 3788999999999999999999999999999999999999999987743
Q ss_pred ccccCCCCccEEEEEEEe
Q 011164 362 ELAVVPPNSTVHYEVELV 379 (492)
Q Consensus 362 ~~~~ip~~~~l~~~v~l~ 379 (492)
..||++++|+|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 4599999999999996
No 18
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.3e-19 Score=153.16 Aligned_cols=135 Identities=27% Similarity=0.366 Sum_probs=103.5
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (492)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~ 131 (492)
++++||.|+++|++++.||++||+|...+.|+.|++|.+++++|||+||.+|.+|++..|.|||+.|||+++..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~------ 75 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPD------ 75 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChH------
Confidence 47899999999999999999999998767999999999999999999999999999999999999999998742
Q ss_pred CceEEEEEEEEEeecccccccccceeeeeecC-----cccCCCCCcceEEEEEEEEcCCCcEEeeecCeeeE
Q 011164 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT 198 (492)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g-----~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~~~~~ 198 (492)
++-.+.+-.|.... +....+++...+ .+.++...++.|+|||||+||+.++.|+-+-....
T Consensus 76 --lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~ 141 (174)
T COG1047 76 --LVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR 141 (174)
T ss_pred --HeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence 33333332222211 111222222222 33455566789999999999999999987655443
No 19
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=2e-18 Score=139.33 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=87.1
Q ss_pred CcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCC-CCC
Q 011164 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (492)
Q Consensus 49 G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~-~~~ 127 (492)
|.++|+.||.|.|||++++.+|+++++++..+.|+.|.+|.+++++||+++|.+|++||+++|.||++++||+.+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4467999999999999999999999999877899999999999999999999999999999999999999999987 457
Q ss_pred CCCCCceEEEEEEE
Q 011164 128 IPPNATLQFDVELL 141 (492)
Q Consensus 128 i~~~~~l~~~vel~ 141 (492)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 20
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=5.2e-19 Score=154.70 Aligned_cols=134 Identities=22% Similarity=0.338 Sum_probs=97.6
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (492)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~ 131 (492)
.++.|+.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+++.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~------- 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP------- 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence 5789999999999999999999999877799999999999999999999999999999999999999998763
Q ss_pred CceEEEEEEEEEeecccccccccceeeeeecC---cccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG---EKWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (492)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g---~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~ 194 (492)
.++..+....+...... ..+..+......| .+.++-..++.|++||||+|||.++.|+-+-
T Consensus 77 -~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i 140 (156)
T PRK15095 77 -DLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEV 140 (156)
T ss_pred -HHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEE
Confidence 23333333222110000 0111100000111 1122334558999999999999999887643
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=9.7e-18 Score=158.88 Aligned_cols=108 Identities=32% Similarity=0.512 Sum_probs=98.6
Q ss_pred CCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEE
Q 011164 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (492)
Q Consensus 268 ~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ 347 (492)
.++|++++++++|.| ..|..||.|+|||++++.||++|++++ ..+.|+.|.++ .+++||+.+|.+|++|+++.|+
T Consensus 144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~--~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSY--TRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccc--cCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 477999999999999 799999999999999999999999886 35678889886 6999999999999999999999
Q ss_pred ECCCCccCCCccccccccCCCCccEEEEEEEeeeeec
Q 011164 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384 (492)
Q Consensus 348 ip~~~~yg~~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 384 (492)
||++++||..+.. .|||+++|+|+|+|+++...
T Consensus 219 IP~~laYG~~g~~----gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 219 IPPELAYGKAGVP----GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred ECchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence 9999999998753 59999999999999999853
No 22
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.73 E-value=1.3e-17 Score=149.56 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=95.7
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (492)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~ 131 (492)
+++++++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+||.+|.+|++|+++.|.|+|+.|||+++..
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~------ 74 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN------ 74 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH------
Confidence 468899999999999999999999986 4899999999999999999999999999999999999999998742
Q ss_pred CceEEEEEEEEEeeccccc---------ccccceeeeeecCcccCCCCCcceEEEEEEEEcCCCcEEeeecC
Q 011164 132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (492)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~---------~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~l~~g~~~~~~~~ 194 (492)
++..+..-.|.....+. .++.+..+| +...++.|+||||||||+.++.|+-+.
T Consensus 75 --lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V--------~ev~~d~V~vD~NHPLAG~~L~F~veV 136 (196)
T PRK10737 75 --LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEI--------TAVEDDHVVVDGNHMLAGQNLKFNVEV 136 (196)
T ss_pred --HEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEE--------EEEcCCEEEEECCCcCCCCEEEEEEEE
Confidence 33333322221111111 111112222 333558999999999999999887643
No 23
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.5e-15 Score=131.49 Aligned_cols=86 Identities=26% Similarity=0.354 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
..+..+..+|..||.+|+.|+|..|..+|+.||..+.... .+.+..||+|+|+|.+|++.|+.||.+|++
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 3488999999999999999999999999999999876432 578899999999999999999999999999
Q ss_pred HHhcCCCCccceeeee
Q 011164 474 VQQQKKFLLLPIFNIY 489 (492)
Q Consensus 474 al~~dp~n~KA~~r~~ 489 (492)
||+++|.+.|||-|++
T Consensus 160 aiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 160 AIELNPTYEKALERRA 175 (271)
T ss_pred hHhcCchhHHHHHHHH
Confidence 9999999999999975
No 24
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=2e-14 Score=125.78 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358 (492)
Q Consensus 285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~ 358 (492)
.+..++.|++||++++.||++||+++ ..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~--~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTR--NNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECC--CCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 56889999999999999999999986 3478999999999999999999999999999999999999999753
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-15 Score=148.29 Aligned_cols=90 Identities=26% Similarity=0.339 Sum_probs=83.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (492)
Q Consensus 387 ~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ 466 (492)
.-.++.+++++.|.++|.+||.+|++|+|.+||++|++||.+... ....|+|||+||..+|+|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHH
Confidence 446788899999999999999999999999999999999998542 17889999999999999999
Q ss_pred HHHHHHHHHhcCCCCccceeeeecc
Q 011164 467 AEKLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 467 ai~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
++++|++||+++|+++|||||++.|
T Consensus 168 Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 168 VIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 26
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.3e-13 Score=116.56 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358 (492)
Q Consensus 285 ~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~ 358 (492)
+...||.|++||++++.||++||+|.. ...|+.|.+|.+++++|||+||.+|.+|++..|.|||+.|||...
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e--~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDE--NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccc--cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 357899999999999999999998852 478999999999999999999999999999999999999999863
No 27
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.43 E-value=6e-13 Score=119.55 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=65.5
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCc
Q 011164 286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358 (492)
Q Consensus 286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~ 358 (492)
..+++.|+++|++++.+|++||++. ...|+.|.+|.++++|+||++|.+|.+|++..|.|||+.|||...
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~---~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecC---CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 5688999999999999999999884 578999999999999999999999999999999999999999864
No 28
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-13 Score=129.46 Aligned_cols=83 Identities=28% Similarity=0.314 Sum_probs=75.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|..+|+.||.+||.++|+.|...|+++|+.-..+ ..+...||+|||+|++-+++|..||.+|++||.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999863222 4578999999999999999999999999999999
Q ss_pred CCCCccceeeeecc
Q 011164 478 KKFLLLPIFNIYAR 491 (492)
Q Consensus 478 dp~n~KA~~r~~~~ 491 (492)
+|.|.||+||=+.+
T Consensus 149 ~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKC 162 (390)
T ss_pred CcchhhhhhhhhHH
Confidence 99999999996543
No 29
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.2e-13 Score=129.08 Aligned_cols=82 Identities=26% Similarity=0.321 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH
Q 011164 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (492)
Q Consensus 392 ~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~ 471 (492)
+.+....|+.+|.+||++++.++|++|+.+|++||.+ .+....+|+|||++|.+||+|..|+++|
T Consensus 74 ~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVkDc 138 (304)
T KOG0553|consen 74 PEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVKDC 138 (304)
T ss_pred hHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3378899999999999999999999999999999998 4455899999999999999999999999
Q ss_pred HHHHhcCCCCccceeee
Q 011164 472 TKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 472 ~~al~~dp~n~KA~~r~ 488 (492)
..||.+||++.|||-|.
T Consensus 139 e~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 139 ESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHhcChHHHHHHHHH
Confidence 99999999999998875
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-12 Score=130.24 Aligned_cols=81 Identities=33% Similarity=0.435 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.+.+.|++||.+|+.|+|..|+..|++||+. .+....+|+|||+||+|+++|..|+.+|.++++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45788899999999999999999999999986 344589999999999999999999999999999
Q ss_pred cCCCCccceeeeeccC
Q 011164 477 QKKFLLLPIFNIYARL 492 (492)
Q Consensus 477 ~dp~n~KA~~r~~~~l 492 (492)
+||++.|||+|+..+|
T Consensus 421 L~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAAL 436 (539)
T ss_pred cCchHHHHHHHHHHHH
Confidence 9999999999987653
No 31
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.27 E-value=7.7e-13 Score=124.75 Aligned_cols=88 Identities=28% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHH
Q 011164 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (492)
Q Consensus 389 ~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai 468 (492)
+.=.++.+..+.++|++||.+||+|+|.+||.||++++.. .+....+|.|||.+|+|+++|..|.
T Consensus 87 d~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~---------------~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 87 DPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV---------------YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred cHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc---------------CCCCccchhhHHHHHHHHHHHHHHH
Confidence 3345677899999999999999999999999999999987 3445788999999999999999999
Q ss_pred HHHHHHHhcCCCCccceeeeecc
Q 011164 469 KLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 469 ~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
.+|+.|+.+|..++|||-|+..|
T Consensus 152 ~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 152 EDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999887643
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.16 E-value=4.9e-11 Score=129.21 Aligned_cols=109 Identities=24% Similarity=0.276 Sum_probs=94.4
Q ss_pred cCCCCccEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 011164 365 VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444 (492)
Q Consensus 365 ~ip~~~~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~ 444 (492)
..|+...+....++..+. ....|.++.+++...+..+|+.||.+|+.|+|.+|+..|++++++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------- 159 (615)
T ss_pred CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence 356677777777776555 456799999999999999999999999999999999999999986321
Q ss_pred HHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA 490 (492)
Q Consensus 445 ~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~ 490 (492)
..+|+|+|.||+++++|++|+.+|++||+++|++.+|++|+..
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2469999999999999999999999999999999999998753
No 33
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.7e-11 Score=107.75 Aligned_cols=76 Identities=30% Similarity=0.432 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..+.++|++||.+|..++|..|+.+|.+||.. .+.-+..|.|+|+||+|+++|+.+..+|.+||+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 46889999999999999999999999999976 556688999999999999999999999999999
Q ss_pred cCCCCccceee
Q 011164 477 QKKFLLLPIFN 487 (492)
Q Consensus 477 ~dp~n~KA~~r 487 (492)
++|+.+|+.|-
T Consensus 73 l~~N~vk~h~f 83 (284)
T KOG4642|consen 73 LDPNLVKAHYF 83 (284)
T ss_pred cChHHHHHHHH
Confidence 99999998773
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=1.9e-09 Score=81.17 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=60.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhc
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQ 477 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~ 477 (492)
|..+...|+.+++.++|.+|+..|++++++ .+....++.|+|.|+.+++ +|.+|+.++++||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 667889999999999999999999999998 3345779999999999999 799999999999999
Q ss_pred CC
Q 011164 478 KK 479 (492)
Q Consensus 478 dp 479 (492)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.4e-10 Score=108.92 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
..+....+|++||.+||+|+|..|.++|+.||..=.. -.+..+.||.|||++.+++++..+||.+|+.|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----------n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----------NKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----------ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4678889999999999999999999999999986222 24567899999999999999999999999999
Q ss_pred HhcCCCCccceeeee
Q 011164 475 QQQKKFLLLPIFNIY 489 (492)
Q Consensus 475 l~~dp~n~KA~~r~~ 489 (492)
+.+|+...|||.|.+
T Consensus 314 l~iD~syikall~ra 328 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRA 328 (486)
T ss_pred hhcCHHHHHHHHHHH
Confidence 999999999998875
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.2e-09 Score=107.54 Aligned_cols=79 Identities=24% Similarity=0.224 Sum_probs=73.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..+|++||.+|..|+|..|+..|+.||.+ .+....+|+|+++||.++++|++|+.++++..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999987 44568999999999999999999999999999999
Q ss_pred CCCccceeeeeccC
Q 011164 479 KFLLLPIFNIYARL 492 (492)
Q Consensus 479 p~n~KA~~r~~~~l 492 (492)
|...|+|+|+-.||
T Consensus 67 p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 67 PDWAKGYSRKGAAL 80 (539)
T ss_pred CchhhHHHHhHHHH
Confidence 99999999986653
No 37
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.3e-09 Score=97.28 Aligned_cols=116 Identities=25% Similarity=0.378 Sum_probs=91.4
Q ss_pred ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEec--CCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEE
Q 011164 34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (492)
Q Consensus 34 ~~~~g~~~~il~~G~G~~~~--~~gd~V~v~Y~~~~~--dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~ 109 (492)
++-.||+|+|+..|+| +-| .+|..|.+||..... .++++|+|...|+|+.+++|.-.-++-||..|..|+++|.+
T Consensus 7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 4567999999999999 554 599999999998776 46799999999999999999999999999999999999999
Q ss_pred EEEecCCc--------------ccCC-----------------------CCCCCCCCCCCceEEEEEEEEEeeccccc
Q 011164 110 VFTIPPEL--------------AYGE-----------------------SGSPPTIPPNATLQFDVELLSWTSVKDIC 150 (492)
Q Consensus 110 ~~~i~~~~--------------ayg~-----------------------~~~~~~i~~~~~l~~~vel~~~~~~~~~~ 150 (492)
.|+|.-.. +-|. .+........++|+|.++|+.+..+.+..
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 98876421 1111 11111233458899999999987765543
No 38
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.72 E-value=6.2e-08 Score=99.55 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=86.8
Q ss_pred CCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCC
Q 011164 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (492)
Q Consensus 51 ~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~ 130 (492)
..++.||.|.++|+++. +|+.++++.. .++.|.+|.+.+++||+.+|.||++|+++.|.+++...|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 35789999999999976 8888887653 78999999999999999999999999999999998888887654 5
Q ss_pred CCceEEEEEEEEEeecccccccccceeee
Q 011164 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (492)
Q Consensus 131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (492)
|.++.|.|++.++.....+..+..+++.+
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 79999999999998776666666666654
No 39
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.69 E-value=4.9e-09 Score=104.24 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..|..+|.++|++|+.+.|..|+..|+|||++ ++-.+..+.|||++++|.++|..|+.+|.+|++
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 35788999999999999999999999999987 444578899999999999999999999999999
Q ss_pred cCCCCccceeeeec
Q 011164 477 QKKFLLLPIFNIYA 490 (492)
Q Consensus 477 ~dp~n~KA~~r~~~ 490 (492)
++|.+.|||||+..
T Consensus 67 ~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 67 LDPTYIKAYVRRGT 80 (476)
T ss_pred cCchhhheeeeccH
Confidence 99999999999954
No 40
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.67 E-value=2.5e-07 Score=95.12 Aligned_cols=91 Identities=16% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL 363 (492)
Q Consensus 284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~ 363 (492)
+.+..||.|+++|++.. +|..|+++ ...++.|.+|.+.+++||+.+|.||++|+++.|.++....|+...
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~----~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----- 214 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGG----KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----- 214 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCC----CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc-----
Confidence 35788999999999976 88888654 457899999999999999999999999999999999887887543
Q ss_pred ccCCCCccEEEEEEEeeeeecccC
Q 011164 364 AVVPPNSTVHYEVELVSFEKEKES 387 (492)
Q Consensus 364 ~~ip~~~~l~~~v~l~~~~~~~~~ 387 (492)
-+|.++.|.|+|.++.+...+
T Consensus 215 ---~~gk~~~f~v~i~~I~~~~~p 235 (408)
T TIGR00115 215 ---LAGKEATFKVTVKEVKEKELP 235 (408)
T ss_pred ---CCCCeEEEEEEEEEeccCCCC
Confidence 258899999999999965433
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.60 E-value=2.9e-08 Score=99.81 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..++.+|+.+|.+++|.+|+..|++||+.-. ....+|.|+|.|++++++|++|+.+|++||+++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDP---------------NNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45688999999999999999999999998732 235688999999999999999999999999999
Q ss_pred CCCccceeeeec
Q 011164 479 KFLLLPIFNIYA 490 (492)
Q Consensus 479 p~n~KA~~r~~~ 490 (492)
|++..++||+..
T Consensus 67 P~~~~a~~~lg~ 78 (356)
T PLN03088 67 PSLAKAYLRKGT 78 (356)
T ss_pred cCCHHHHHHHHH
Confidence 999999888654
No 42
>PRK01490 tig trigger factor; Provisional
Probab=98.60 E-value=2.1e-07 Score=96.36 Aligned_cols=100 Identities=25% Similarity=0.449 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEcCCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCC
Q 011164 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (492)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~lg~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~ 131 (492)
.++.||.|.++|+++. +|..++++.. .++.|.+|.+.+++||+.+|.||++|+++.|.++....|+.... +|
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 4789999999999997 8888887654 68999999999999999999999999999999998888876553 57
Q ss_pred CceEEEEEEEEEeecccccccccceeee
Q 011164 132 ATLQFDVELLSWTSVKDICKDGGIIKKI 159 (492)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (492)
..+.|.|++.++.....+..+..+++.+
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~~ 256 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKKL 256 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 8999999999998766666666666543
No 43
>PRK01490 tig trigger factor; Provisional
Probab=98.57 E-value=7e-07 Score=92.53 Aligned_cols=90 Identities=14% Similarity=0.343 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccc
Q 011164 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL 363 (492)
Q Consensus 284 ~~p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~ 363 (492)
..+..||.|+++|.+.. +|+.|+.+ ...++.|.+|.+.+++||+.+|.||++|+++.|.++....|+....
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~----~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---- 226 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGG----KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---- 226 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCC----CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence 34799999999999998 88888653 4568899999999999999999999999999999987777765332
Q ss_pred ccCCCCccEEEEEEEeeeeeccc
Q 011164 364 AVVPPNSTVHYEVELVSFEKEKE 386 (492)
Q Consensus 364 ~~ip~~~~l~~~v~l~~~~~~~~ 386 (492)
+|..+.|.|+|.++.+...
T Consensus 227 ----agk~~~f~v~v~~V~~~~~ 245 (435)
T PRK01490 227 ----AGKEATFKVTVKEVKEKEL 245 (435)
T ss_pred ----CCCeEEEEEEEEEeccCCC
Confidence 4788999999999996543
No 44
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.7e-08 Score=97.36 Aligned_cols=140 Identities=23% Similarity=0.373 Sum_probs=105.7
Q ss_pred CCCCcCCCCCCCCcccccccee---eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEecCCCEEeecCCCCCcEEEEc
Q 011164 11 NEMDADMDLPDDAPMMKVGEEK---EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTL 87 (492)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~il~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~ss~~~~~p~~f~l 87 (492)
-+.++....+...|..+..+.. .|..-.-...++..-++ . ++.||.|+|+|.++. ||..|.+... .-+.|.|
T Consensus 115 v~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~l 189 (441)
T COG0544 115 VELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLEL 189 (441)
T ss_pred eecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEE
Confidence 3445666666666666655444 12222333444444444 3 899999999999954 8888887654 5689999
Q ss_pred CCCcccHhHHHHhccCcCccEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecccccccccceeeee
Q 011164 88 GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160 (492)
Q Consensus 88 g~~~~~~gle~~l~~m~~Ge~~~~~i~~~~ayg~~~~~~~i~~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~ 160 (492)
|+++++|||+.+|.||++|++..|.+.....|..... +|.+..|.|.+..+.....+..|..+.+.+.
T Consensus 190 Gs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~ 257 (441)
T COG0544 190 GSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLG 257 (441)
T ss_pred cCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcC
Confidence 9999999999999999999999998888778877664 5789999999999998888877777777653
No 45
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=3.6e-07 Score=67.77 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=56.7
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
..|..+++.|+|.+|+..|+++++. .+....++.+++.|+.++|+|++|+..+.++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999986 334688999999999999999999999999999999874
No 46
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.2e-08 Score=93.94 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HH-HHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---EE-KKQAKALKVACNLNNAACKLKLKDYKQ 466 (492)
Q Consensus 391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~---~~-~~~~~~~~~~l~~N~a~~~lk~~~~~~ 466 (492)
+....+..+..+|+.||..|++++|..|..+|.++++++...+.... ++ ...+...+..++.|+|+|-+|++.|..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 34466788889999999999999999999999999999985222211 12 345788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccceeeee
Q 011164 467 AEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 467 ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
|+..|..+++.++++.||+||.-
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~ 316 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRG 316 (372)
T ss_pred ceeccccccccChhhCcHHHHHH
Confidence 99999999999999999999974
No 47
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.4e-06 Score=85.36 Aligned_cols=88 Identities=17% Similarity=0.332 Sum_probs=70.9
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCCcccchhHHHHHhccCcCcEEEEEECCCCccCCCcccccccc
Q 011164 286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAV 365 (492)
Q Consensus 286 p~~g~~V~v~y~~~~~~g~~~d~~~~~~~~~~~~~~lg~~~~~~gle~~l~~m~~Ge~~~i~ip~~~~yg~~~~~~~~~~ 365 (492)
...||+|+|+|.|.. ||..|.. .....+.|.||.++++|||+.+|.||+.|+...|.+.-...|.....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~feg----g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------ 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEG----GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------ 226 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccC----ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence 899999999999966 8888854 35677999999999999999999999999999865544344443322
Q ss_pred CCCCccEEEEEEEeeeeeccc
Q 011164 366 VPPNSTVHYEVELVSFEKEKE 386 (492)
Q Consensus 366 ip~~~~l~~~v~l~~~~~~~~ 386 (492)
+|....|.|+|..|.....
T Consensus 227 --aGK~a~F~V~vkeVk~~el 245 (441)
T COG0544 227 --AGKEATFKVKVKEVKKREL 245 (441)
T ss_pred --CCCceEEEEEEEEEeecCC
Confidence 3677999999999996443
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.31 E-value=4.2e-06 Score=64.39 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..+..+...|..++..|+|++|+..|++++++...... -......++.|+|.|+.++|++++|+..+++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677889999999999999999999999998433221 1344588999999999999999999999999998
Q ss_pred cC
Q 011164 477 QK 478 (492)
Q Consensus 477 ~d 478 (492)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 49
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=5.2e-06 Score=71.86 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=68.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
..+.+...|..+|..|+|++|.+.|+-...+ +.....-+.||++|+-.+++|.+||..+.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457788999999999999999999999987 5667889999999999999999999999999999
Q ss_pred CCCCccceeee
Q 011164 478 KKFLLLPIFNI 488 (492)
Q Consensus 478 dp~n~KA~~r~ 488 (492)
+|+|+.++|+-
T Consensus 99 ~~ddp~~~~~a 109 (157)
T PRK15363 99 KIDAPQAPWAA 109 (157)
T ss_pred CCCCchHHHHH
Confidence 99999887753
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=1.8e-06 Score=75.23 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+...|..+++.|+|.+|+..|++++.. .+.....+.|+|.++.++|+|++|+..++++++++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345688889999999999999998876 22234455555555555555555555555555555555
Q ss_pred ccceeee
Q 011164 482 LLPIFNI 488 (492)
Q Consensus 482 ~KA~~r~ 488 (492)
..++++.
T Consensus 92 ~~a~~~l 98 (144)
T PRK15359 92 PEPVYQT 98 (144)
T ss_pred cHHHHHH
Confidence 5555543
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.15 E-value=2.5e-06 Score=74.24 Aligned_cols=75 Identities=11% Similarity=-0.067 Sum_probs=66.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
...+...|..+.+.|+|.+|+..|++++.. .+-....+.|+|.|+.++|++++|+..+.++|+++
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALML---------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456678999999999999999999999986 22347889999999999999999999999999999
Q ss_pred CCCccceeee
Q 011164 479 KFLLLPIFNI 488 (492)
Q Consensus 479 p~n~KA~~r~ 488 (492)
|+++.++..+
T Consensus 123 p~~~~~~~~~ 132 (144)
T PRK15359 123 YADASWSEIR 132 (144)
T ss_pred CCChHHHHHH
Confidence 9998776544
No 52
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3e-06 Score=82.78 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHH
Q 011164 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (492)
Q Consensus 391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~ 470 (492)
..++....|+..|++||.+|++++|..|+..|+.|+++... .+..|.|+|+|++.+++|++|.-+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---------------~a~yy~nRAa~~m~~~~~~~a~~d 105 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---------------NASYYSNRAATLMMLGRFEEALGD 105 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---------------chhhhchhHHHHHHHHhHhhcccc
Confidence 44567888999999999999999999999999999998542 388899999999999999999999
Q ss_pred HHHHHhcCCCCccceeee
Q 011164 471 CTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 471 ~~~al~~dp~n~KA~~r~ 488 (492)
+.+.++++|...|+..|.
T Consensus 106 ar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 106 ARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred hhhheecCCCccccccch
Confidence 999999999999987664
No 53
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.10 E-value=7.3e-06 Score=62.10 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 407 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
+.++++++|..|+..+++++.. .+....++.++|.|+.++|+|.+|+.+++++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 5678999999999999999987 34468899999999999999999999999999999988654
No 54
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.08 E-value=4.8e-06 Score=52.88 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=30.3
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
.+|+|+|.||+++++|.+|+.+|++||+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 55
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=2.8e-06 Score=63.41 Aligned_cols=59 Identities=31% Similarity=0.337 Sum_probs=51.7
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
++++|+|.+|+..|++++... +....++.++|.|++++|+|++|...+.+++..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN---------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT---------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 578999999999999999873 33477888999999999999999999999999999874
No 56
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=1.9e-06 Score=86.31 Aligned_cols=85 Identities=24% Similarity=0.180 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc---CHHHHHH
Q 011164 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEK 469 (492)
Q Consensus 393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~---~~~~ai~ 469 (492)
.+..+.++..|++||..|-.+.+..|+..|.+++.+ -+....||.|+|++++|.+ +-..|++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence 466788999999999999999999999999999988 4567899999999999976 6788999
Q ss_pred HHHHHHhcCCCCccceeeeeccC
Q 011164 470 LCTKVQQQKKFLLLPIFNIYARL 492 (492)
Q Consensus 470 ~~~~al~~dp~n~KA~~r~~~~l 492 (492)
+|..||++||...||+||.+-+|
T Consensus 433 Dch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHH
Confidence 99999999999999999987554
No 57
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.87 E-value=3.3e-06 Score=80.81 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHH
Q 011164 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (492)
Q Consensus 391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~ 470 (492)
..++.++.|+..|-++.+++..|.+..|+..|++|+.+ ..-...+|.+++.+++|++++..||++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence 45678999999999999999999999999999999986 444588999999999999999999999
Q ss_pred HHHHHhcCCCCccce
Q 011164 471 CTKVQQQKKFLLLPI 485 (492)
Q Consensus 471 ~~~al~~dp~n~KA~ 485 (492)
|+.|++++|+..|.+
T Consensus 171 ~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGY 185 (377)
T ss_pred hhhhhccCccccccc
Confidence 999999999887754
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=3.1e-05 Score=66.28 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC---------hHHH----------HHHHHHHHHhHhHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEK----------KQAKALKVACNLNNAACKL 459 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~---------~~~~----------~~~~~~~~~l~~N~a~~~l 459 (492)
+......|..+++.++|.+|+..|++++..-....... ..+. ....+.....+.|+|.|+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34566788888888888888888888876522110000 0000 0011122344556666666
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 460 KLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 460 k~~~~~~ai~~~~~al~~dp~n~K 483 (492)
+++++++|+..++++++++|++.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666665543
No 59
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=6.5e-05 Score=47.45 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=30.1
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
..+.++|.+++++++|++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999986
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=6.4e-05 Score=67.51 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
.....+..+...|..+++.|+|.+|+..|+++++..... .....++.|+|.|+.++++|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345667778899999999999999999999999863211 01256889999999999999999999999
Q ss_pred HHhcCCCCccceeee
Q 011164 474 VQQQKKFLLLPIFNI 488 (492)
Q Consensus 474 al~~dp~n~KA~~r~ 488 (492)
++.++|++..+++.+
T Consensus 98 al~~~p~~~~~~~~l 112 (172)
T PRK02603 98 ALELNPKQPSALNNI 112 (172)
T ss_pred HHHhCcccHHHHHHH
Confidence 999999988776543
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.70 E-value=4e-05 Score=75.27 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=41.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..+-.+|..+.+.|++.+|+..|+++++.-.. ...+|+|+|.++.++++|++|+..++++|+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445667788888888888888888888875221 13344444444444444444444444444444
Q ss_pred CCCcccee
Q 011164 479 KFLLLPIF 486 (492)
Q Consensus 479 p~n~KA~~ 486 (492)
|++..+++
T Consensus 129 P~~~~a~~ 136 (296)
T PRK11189 129 PTYNYAYL 136 (296)
T ss_pred CCCHHHHH
Confidence 44444433
No 62
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.67 E-value=8.1e-05 Score=74.91 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
....+..+-..|+.+|+.|+|++|+..|++||.+-.. ......+|+|+|.||.+++++++|+.++.+|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------------~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------------PDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455677888999999999999999999999987322 1112356899999999999999999999999
Q ss_pred Hhc
Q 011164 475 QQQ 477 (492)
Q Consensus 475 l~~ 477 (492)
|++
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 998
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.00017 Score=64.43 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
....+..+...|..++..++|.+|+..|++++..... ......++.|+|.++.+++++++|+..|.+|
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446777888899999999999999999999986321 1123458999999999999999999999999
Q ss_pred HhcCCCCccceee
Q 011164 475 QQQKKFLLLPIFN 487 (492)
Q Consensus 475 l~~dp~n~KA~~r 487 (492)
+.++|.+..++++
T Consensus 99 l~~~~~~~~~~~~ 111 (168)
T CHL00033 99 LERNPFLPQALNN 111 (168)
T ss_pred HHhCcCcHHHHHH
Confidence 9999988766544
No 64
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.00016 Score=72.95 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=63.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+..+|..+++.|+|.+|+..+++|+++ .+....+|.++|.+++++++|.+|+.+++++++++|
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 45668899999999999999999999987 233467899999999999999999999999999999
Q ss_pred CCcccee
Q 011164 480 FLLLPIF 486 (492)
Q Consensus 480 ~n~KA~~ 486 (492)
++..+..
T Consensus 102 ~~~~~~~ 108 (356)
T PLN03088 102 GDSRFTK 108 (356)
T ss_pred CCHHHHH
Confidence 9876543
No 65
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.00044 Score=65.71 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=62.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+-..|..++++|+|.+|+..|++.+..... .+......+++|.+|+++++|.+|+..+++.++.+|
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPF------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 34567889999999999999999999986443 234556678999999999999999999999999999
Q ss_pred CCccc
Q 011164 480 FLLLP 484 (492)
Q Consensus 480 ~n~KA 484 (492)
+|+++
T Consensus 101 ~~~~~ 105 (243)
T PRK10866 101 THPNI 105 (243)
T ss_pred CCCch
Confidence 99864
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.00021 Score=55.34 Aligned_cols=72 Identities=26% Similarity=0.272 Sum_probs=58.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+...|..++..+++.+|+..++++++.... ...++.++|.|+...+++++|+..+++++.+.|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD---------------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 456788889999999999999999876321 12678889999999999999999999999998887
Q ss_pred ccceeee
Q 011164 482 LLPIFNI 488 (492)
Q Consensus 482 ~KA~~r~ 488 (492)
..+++++
T Consensus 68 ~~~~~~~ 74 (100)
T cd00189 68 AKAYYNL 74 (100)
T ss_pred hhHHHHH
Confidence 7555443
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.43 E-value=0.00033 Score=59.82 Aligned_cols=39 Identities=26% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
..++.|+|.|++++++|.+|+..+++++.++|.+...+|
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 344445555555555555555555555555555444443
No 68
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.43 E-value=0.00018 Score=50.50 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=31.7
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
.+++.+|.++.|+++|.+|.++|+.+|+++|+|..|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3677899999999999999999999999999998763
No 69
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.00069 Score=56.24 Aligned_cols=74 Identities=16% Similarity=0.058 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (492)
Q Consensus 393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~ 472 (492)
...++...++--+|-.+-..|+...|+++|.++|.++ +.+.++|+|+|.++--.++-++|+++.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 3567788888889999999999999999999999884 3468999999999999999999999999
Q ss_pred HHHhcCCCC
Q 011164 473 KVQQQKKFL 481 (492)
Q Consensus 473 ~al~~dp~n 481 (492)
+||++-..-
T Consensus 102 ~AleLag~~ 110 (175)
T KOG4555|consen 102 KALELAGDQ 110 (175)
T ss_pred HHHHhcCcc
Confidence 999996543
No 70
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.00019 Score=73.72 Aligned_cols=48 Identities=10% Similarity=-0.079 Sum_probs=42.6
Q ss_pred HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
++....+++|+|..|--.|+-.+||..+..||.++|+.+.|+-+.+..
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 667788999999999999999999999999999999999998776543
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.38 E-value=0.00054 Score=64.69 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.+..+...|..+++.|+|..|+..|++++..... .......++++|.|++++++|++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3556788999999999999999999999886432 1234567899999999999999999999999999
Q ss_pred CCCCcc
Q 011164 478 KKFLLL 483 (492)
Q Consensus 478 dp~n~K 483 (492)
+|++..
T Consensus 100 ~p~~~~ 105 (235)
T TIGR03302 100 HPNHPD 105 (235)
T ss_pred CcCCCc
Confidence 999887
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.35 E-value=0.00023 Score=65.50 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=56.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC---------------CC-ChHHH------HHHHHHHHHhHhHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------------SF-GDEEK------KQAKALKVACNLNNAA 456 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---------------~~-~~~~~------~~~~~~~~~l~~N~a~ 456 (492)
+..+...|..+...++|..|+..|++|+++-.... .. .++.. -+.++-...+++|+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 44567788889999999999999999998643210 00 11111 1223345567777777
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 457 CKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 457 ~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+++++|+|++|+.+++++|+++|.+.
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 78888888888888888777777543
No 73
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.34 E-value=0.00057 Score=58.30 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+-..|...++.|+|..|+..++....-... .+....+.++++-+|++.++|.+|+..+++-++++|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 35667888999999999999998887765433 233456778999999999999999999999999999
Q ss_pred CCcccee
Q 011164 480 FLLLPIF 486 (492)
Q Consensus 480 ~n~KA~~ 486 (492)
.|+++=|
T Consensus 79 ~hp~vdY 85 (142)
T PF13512_consen 79 THPNVDY 85 (142)
T ss_pred CCCCccH
Confidence 9998543
No 74
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.30 E-value=0.00035 Score=71.91 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=57.7
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--------------CChH-----HHHHHHHHHHHhHhHHHHHHHHhc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------FGDE-----EKKQAKALKVACNLNNAACKLKLK 462 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~--------------~~~~-----~~~~~~~~~~~l~~N~a~~~lk~~ 462 (492)
+-..||.+-..|+..+|.++|.+||++...-.+ +.+. ..-++.+.....++|+|..|-+++
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 334455555557777777777777776532110 0000 001224456778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCccceee
Q 011164 463 DYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 463 ~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
++++|+.++++||.++|....||-+
T Consensus 403 nl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 403 NLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHhcCchHHHHHHh
Confidence 9999999999999999988877654
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.29 E-value=0.00055 Score=67.19 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=61.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..+...|..+...|+|..|+..|.+++++ .+.....+.|++.++...++|++|+.+++++++++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456678899999999999999999999986 22236688999999999999999999999999999
Q ss_pred CCCc
Q 011164 479 KFLL 482 (492)
Q Consensus 479 p~n~ 482 (492)
|++.
T Consensus 163 P~~~ 166 (296)
T PRK11189 163 PNDP 166 (296)
T ss_pred CCCH
Confidence 9886
No 76
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.23 E-value=0.0013 Score=54.31 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=20.8
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
.++.++|.|+.+++++.+|+..++++++..|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 3455666666666666666666666666666553
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.00013 Score=54.50 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=39.7
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA 490 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~ 490 (492)
+..+.++|.+++++++|++|+.+++++|+++|++..+++++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~ 45 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGL 45 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5678999999999999999999999999999999999988754
No 78
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.14 E-value=0.0015 Score=60.35 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..+-..|..+|++|+|.+|+..|++.+...... +....+...+|.|+++.++|..|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5677889999999999999999999999875442 2345667899999999999999999999999999
Q ss_pred CCCcc
Q 011164 479 KFLLL 483 (492)
Q Consensus 479 p~n~K 483 (492)
|++.+
T Consensus 73 P~~~~ 77 (203)
T PF13525_consen 73 PNSPK 77 (203)
T ss_dssp TT-TT
T ss_pred CCCcc
Confidence 99876
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.14 E-value=0.0012 Score=54.54 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=59.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+-..|..++++|+|.+|+..|.+++..... ......++.+++.++++.++|..|+..+.+++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 35667899999999999999999999986332 122356788999999999999999999999999999
Q ss_pred CCc
Q 011164 480 FLL 482 (492)
Q Consensus 480 ~n~ 482 (492)
++.
T Consensus 71 ~~~ 73 (119)
T TIGR02795 71 KSP 73 (119)
T ss_pred CCC
Confidence 864
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.10 E-value=0.00039 Score=54.22 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 412 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
+++|+.|+..|.+++..-.. .. ....+.++|.|++++++|++|+..+++ ++.++.+....|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 68999999999999986332 11 455778899999999999999999999 888887765544
No 81
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0013 Score=62.48 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=53.4
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
.++-.+.+.|.|..|++--++||.+ ++....+|.-|+.+|+-+|+|.+|++.+.+||++||+|.
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 4455555666777777766666665 778899999999999999999999999999999999986
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.002 Score=50.17 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=45.3
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
-+...|..+|+.|+|.+|+..+++ ++. ......++.-+|.|++++++|++|+....++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344579999999999999999998 543 2223555566799999999999999998775
No 83
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.02 E-value=0.00061 Score=45.97 Aligned_cols=41 Identities=17% Similarity=-0.031 Sum_probs=37.2
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
.++.++|.+|..+|++++|+..++++|+.+|+|..++++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 36789999999999999999999999999999999887653
No 84
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.01 E-value=0.0011 Score=41.72 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=30.2
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
.+|.++|.++.+++++++|+.++.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468899999999999999999999999999965
No 85
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.003 Score=55.18 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=63.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
..+.+...|-.+|.+|+|.+|...|+-...+ +......+..||+|+..+++|++|+..+..|..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4557778899999999999999999766654 2233556889999999999999999999999999
Q ss_pred CCCCccceee
Q 011164 478 KKFLLLPIFN 487 (492)
Q Consensus 478 dp~n~KA~~r 487 (492)
+++++-..|+
T Consensus 101 ~~~dp~p~f~ 110 (165)
T PRK15331 101 LKNDYRPVFF 110 (165)
T ss_pred ccCCCCccch
Confidence 9999887775
No 86
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.96 E-value=0.0012 Score=71.93 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=62.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-----------CCC--hHHH------HHHHHHHHHhHhHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFG--DEEK------KQAKALKVACNLNNAACKL 459 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~--~~~~------~~~~~~~~~l~~N~a~~~l 459 (492)
+..+...|..++..|++.+|+..|++++..-.... ... ++.. -...+....++++++.+++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566778888888999999999999887532110 000 0000 1112234568889999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
.+|+|++|+.+++++|+++|++..+++++.
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 999999999999999999998887766543
No 87
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0029 Score=65.43 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
.-+..++..+|+.++|..|++.|...++++..+.. ......+..|+|.||+++.+.+.|++...+|=+.||
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 45778999999999999999999999999876421 233388899999999999999999999999999998
Q ss_pred CCc
Q 011164 480 FLL 482 (492)
Q Consensus 480 ~n~ 482 (492)
.++
T Consensus 426 ~~~ 428 (872)
T KOG4814|consen 426 QSP 428 (872)
T ss_pred ccH
Confidence 764
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.94 E-value=0.0032 Score=65.54 Aligned_cols=77 Identities=21% Similarity=0.145 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
.+..+..++..|+.+...++|.+|+..|++|+...+.....+ .+.....+.|||..|.+.++|.+|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 345666777899999999999999999999999876443322 5667889999999999999999999999999
Q ss_pred HhcC
Q 011164 475 QQQK 478 (492)
Q Consensus 475 l~~d 478 (492)
+++-
T Consensus 310 l~I~ 313 (508)
T KOG1840|consen 310 LEIY 313 (508)
T ss_pred HHHH
Confidence 9874
No 89
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.0005 Score=72.92 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHH
Q 011164 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQA 467 (492)
Q Consensus 390 ~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~a 467 (492)
-+....+..+..++++||.+|.+++|..|...|-.++.++..+ ......+.+|++.|++.++ +|..+
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~ 112 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKA 112 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhh
Confidence 3466788999999999999999999999999999999987654 3456889999999998765 89999
Q ss_pred HHHHHHHHhcCCCCccceeee
Q 011164 468 EKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 468 i~~~~~al~~dp~n~KA~~r~ 488 (492)
+..|+-|+...|...+||+++
T Consensus 113 ~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 113 IPECELALESQPRISKALLKR 133 (748)
T ss_pred cCchhhhhhccchHHHHHhhh
Confidence 999999999999999999983
No 90
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.92 E-value=0.0018 Score=59.78 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=47.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.+..+...|..+++.++|.+|+..|+++++... ....++.+++.++..++++++|+..+.+++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---------------DDYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566778888888888888888888886521 11345555666666666666666666666666
Q ss_pred CCCCcccee
Q 011164 478 KKFLLLPIF 486 (492)
Q Consensus 478 dp~n~KA~~ 486 (492)
+|.+..+++
T Consensus 95 ~~~~~~~~~ 103 (234)
T TIGR02521 95 NPNNGDVLN 103 (234)
T ss_pred CCCCHHHHH
Confidence 655544433
No 91
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.00029 Score=69.73 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=63.1
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
..||-+|++.+|.+|++.|+-||....+. -..+++.+++|++..++++|+|.+||..++.+.+..|+..-
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsi----------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSI----------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhcccc----------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 67999999999999999999999875432 26789999999999999999999999999999999986544
Q ss_pred ce
Q 011164 484 PI 485 (492)
Q Consensus 484 A~ 485 (492)
||
T Consensus 312 ~~ 313 (840)
T KOG2003|consen 312 AL 313 (840)
T ss_pred hh
Confidence 43
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0015 Score=60.87 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=63.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.++.+|..+|++|+|..|+...+++.+. .+....+|+-+++||.++|++..|...+.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 3455999999999999999999999987 3334678889999999999999999999999999999
Q ss_pred Cccceeee
Q 011164 481 LLLPIFNI 488 (492)
Q Consensus 481 n~KA~~r~ 488 (492)
+++++-|.
T Consensus 167 ~p~~~nNl 174 (257)
T COG5010 167 EPSIANNL 174 (257)
T ss_pred CchhhhhH
Confidence 98876654
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0022 Score=58.62 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
++-+-.-|.-++.+|+|.+|...+++|+.-=. -......+.|++.|.+|.|++..|.++++++|++|
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 34455667777777788888777777775311 11236678899999999999999999999999999
Q ss_pred CCCccc
Q 011164 479 KFLLLP 484 (492)
Q Consensus 479 p~n~KA 484 (492)
|++.-+
T Consensus 170 p~~~~~ 175 (250)
T COG3063 170 PQFPPA 175 (250)
T ss_pred cCCChH
Confidence 998644
No 94
>PRK12370 invasion protein regulator; Provisional
Probab=96.81 E-value=0.0023 Score=68.57 Aligned_cols=69 Identities=7% Similarity=-0.089 Sum_probs=56.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+...|..+...|++.+|+..|++|++. .+....+++++|.++..+|++++|+..+.++++++|.+
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 345677777888999999999999886 22336678999999999999999999999999999998
Q ss_pred ccce
Q 011164 482 LLPI 485 (492)
Q Consensus 482 ~KA~ 485 (492)
..+.
T Consensus 406 ~~~~ 409 (553)
T PRK12370 406 AAAG 409 (553)
T ss_pred hhhH
Confidence 7653
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.80 E-value=0.0011 Score=72.25 Aligned_cols=80 Identities=8% Similarity=-0.108 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.+......++.+++++++++|...+++++.. .+.....++++|.|+.++|+|++|+..+++++.
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 34556667788888888888888888888865 334577888999999999999999999999999
Q ss_pred cCCCCccceeeeecc
Q 011164 477 QKKFLLLPIFNIYAR 491 (492)
Q Consensus 477 ~dp~n~KA~~r~~~~ 491 (492)
.+|++.+|++.+..+
T Consensus 183 ~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 183 QHPEFENGYVGWAQS 197 (694)
T ss_pred cCCCcHHHHHHHHHH
Confidence 888888888776544
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.74 E-value=0.003 Score=54.86 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=51.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
-+...|-.+=..|+|.+|+..|.+|+.+-. -....+.|++.|++++|+...|+..+..|+..-
T Consensus 71 y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---------------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 71 YWFRLGECCQAQKHWGEAIYAYGRAAQIKI---------------DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344555555578999999999999998732 237788999999999999999999999998874
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0041 Score=55.60 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=61.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+.-+-.+|-.+.|.++|+.|+.--++||.+ .+....++.-||-+|-|+..|++|+.++.++++.|
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 445667888899999999999999999987 45566777789999999999999999999999999
Q ss_pred CCCccc
Q 011164 479 KFLLLP 484 (492)
Q Consensus 479 p~n~KA 484 (492)
|.+..|
T Consensus 199 Ps~~ea 204 (271)
T KOG4234|consen 199 PSRREA 204 (271)
T ss_pred cchHHH
Confidence 987643
No 98
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.69 E-value=0.0041 Score=61.44 Aligned_cols=81 Identities=11% Similarity=0.180 Sum_probs=64.9
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC---ChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~---~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
...|..+|++++|..|+.+|+.||++++...-. .......+..+..-+..-++.||+++++.+-|+.+.-+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 457889999999999999999999998653221 12233445556666777899999999999999999999999999
Q ss_pred CCcc
Q 011164 480 FLLL 483 (492)
Q Consensus 480 ~n~K 483 (492)
.+.-
T Consensus 260 ~~fr 263 (569)
T PF15015_consen 260 SYFR 263 (569)
T ss_pred chhh
Confidence 7754
No 99
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.66 E-value=0.0018 Score=73.36 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=16.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
+...|..+.+.|++.+|+..|++++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344556666666666666666666654
No 100
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.66 E-value=0.0061 Score=54.60 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC--------------H
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------Y 464 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~--------------~ 464 (492)
+..+...|..+++.|+|.+|+..|+++++... .....+.+++.++.++++ |
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~ 136 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNP---------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence 34677889999999999999999999998632 235667888999988887 6
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 011164 465 KQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 465 ~~ai~~~~~al~~dp~n~ 482 (492)
.+|+..+++++.++|+|.
T Consensus 137 ~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 137 DKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHhhCchhH
Confidence 889999999999999874
No 101
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.57 E-value=0.0045 Score=57.12 Aligned_cols=71 Identities=25% Similarity=0.326 Sum_probs=44.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
..|..++..|+|.+|+..|.++++... .......+.|+|.|+.+++++.+|+..+.++++.+|++..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 170 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE 170 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH
Confidence 445555666666666666666664211 0112345667777777777777777777777777777665
Q ss_pred ceee
Q 011164 484 PIFN 487 (492)
Q Consensus 484 A~~r 487 (492)
+++.
T Consensus 171 ~~~~ 174 (234)
T TIGR02521 171 SLLE 174 (234)
T ss_pred HHHH
Confidence 5543
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.55 E-value=0.0051 Score=59.38 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc---------------c-CCCChHHHHH---HHHHHHHhHhHHHHH
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---------------D-TSFGDEEKKQ---AKALKVACNLNNAAC 457 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---------------~-~~~~~~~~~~---~~~~~~~l~~N~a~~ 457 (492)
..+.+..+.|++++.+++|.+|+..|..|+..-.. . ....-.+... +.+-...+-..|+.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34677889999999999999999999999864210 0 0000112222 223334455678899
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 458 KLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 458 ~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
++|+|++++|+.++++||+.+|+|.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999998653
No 103
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0046 Score=37.28 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=30.1
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
.++.++|.|+..+++|++|+..+.++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467899999999999999999999999998863
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.52 E-value=0.0066 Score=55.80 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.3
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
..|..+|+.|+|++|+..|+++++..
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566666777777777777777654
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.50 E-value=0.0063 Score=46.70 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+...|..++..+++.+|+..|+++++..... ..++.+++.++..++++.+|+..+.++++.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 45667888888999999999999999863321 267889999999999999999999999998873
No 106
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0021 Score=41.25 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=24.9
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+|+|+|.+|.++|+|++|+..+.++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999976553
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.0031 Score=64.66 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=44.3
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
.|--++-.++|.+|+.+|+.||..- +-...+++-|++++..-++.++||..+++||++.|+.+.+
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~---------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK---------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC---------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 4666677899999999999999862 2334455555555555555555555555555555555555
Q ss_pred eeee
Q 011164 485 IFNI 488 (492)
Q Consensus 485 ~~r~ 488 (492)
.|+.
T Consensus 501 RyNl 504 (579)
T KOG1125|consen 501 RYNL 504 (579)
T ss_pred ehhh
Confidence 5543
No 108
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.40 E-value=0.0061 Score=69.06 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+...|..+...|++++|+..|+++++. .+....++.|+|.++.++|++++|+..+++|++++|
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l---------------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKG---------------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34557788899999999999999999987 233478899999999999999999999999999999
Q ss_pred CCcccee
Q 011164 480 FLLLPIF 486 (492)
Q Consensus 480 ~n~KA~~ 486 (492)
++.+..+
T Consensus 709 ~~a~i~~ 715 (987)
T PRK09782 709 NQALITP 715 (987)
T ss_pred CCchhhh
Confidence 9876543
No 109
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.36 E-value=0.015 Score=53.39 Aligned_cols=79 Identities=23% Similarity=0.142 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
.-..+....+.|-.++.+|++..|..-.++||+. ++-....|.=||..|.++|+.+.|-+.+.+|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 3445667778999999999999999999999986 4445777888999999999999999999999
Q ss_pred HhcCCCCccceeee
Q 011164 475 QQQKKFLLLPIFNI 488 (492)
Q Consensus 475 l~~dp~n~KA~~r~ 488 (492)
|.++|+|-..+.|+
T Consensus 96 lsl~p~~GdVLNNY 109 (250)
T COG3063 96 LSLAPNNGDVLNNY 109 (250)
T ss_pred HhcCCCccchhhhh
Confidence 99999988776654
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.35 E-value=0.0023 Score=61.67 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC------------CCh-----HHH------HHHHHHHHHh
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------FGD-----EEK------KQAKALKVAC 450 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~------------~~~-----~~~------~~~~~~~~~l 450 (492)
.+++.+.+..+.+.+...+++|.+|+..|++.++.-....+ ..+ +.. -.+++-.+.+
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH
Confidence 35677888888999999999999999999999975332111 000 111 1122344667
Q ss_pred HhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 451 NLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 451 ~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
++.||-+|+--..|+.||.++.+|++++++|..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 777777777777777777777777777777654
No 111
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.26 E-value=0.0066 Score=37.61 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=29.8
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
++.++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999874
No 112
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.24 E-value=0.02 Score=55.82 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
..|..++..|.-+.+. +++++|+..|++|+.++.... .......++.++|.++.++++|.+|+..+.++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666667766677 899999999999999976532 245567889999999999999999999999998
Q ss_pred hc
Q 011164 476 QQ 477 (492)
Q Consensus 476 ~~ 477 (492)
..
T Consensus 183 ~~ 184 (282)
T PF14938_consen 183 KK 184 (282)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 113
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.019 Score=49.72 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=67.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
.+...|...-..++...++..|++++.++... ..+-......+......++..++.+++..++|++|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44455677777889999999999999987532 13344567788899999999999999999999999999999
Q ss_pred HHhcCCCCccceee
Q 011164 474 VQQQKKFLLLPIFN 487 (492)
Q Consensus 474 al~~dp~n~KA~~r 487 (492)
++.+||-+..++..
T Consensus 88 ~l~~dP~~E~~~~~ 101 (146)
T PF03704_consen 88 ALALDPYDEEAYRL 101 (146)
T ss_dssp HHHHSTT-HHHHHH
T ss_pred HHhcCCCCHHHHHH
Confidence 99999998766543
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.24 E-value=0.015 Score=55.72 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=44.7
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+.-.|..+|..|+|..|+..|++.++.... ......++.+++.|+.+++++++|+..++++++..|++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPK------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345666666666666666666666654332 12235556667777777777777777777777777765
Q ss_pred c
Q 011164 482 L 482 (492)
Q Consensus 482 ~ 482 (492)
.
T Consensus 251 ~ 251 (263)
T PRK10803 251 D 251 (263)
T ss_pred H
Confidence 3
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.20 E-value=0.019 Score=55.05 Aligned_cols=70 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHHhhhHH-HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 402 KKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 402 ~K~~Gn~~-fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
..+.+-.+ +++++|.+|+..|++.++..... .....++.-+|.+|+..++|.+|+..+.+++...|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34555555 66799999999999999875432 233556788999999999999999999999999998
Q ss_pred Ccc
Q 011164 481 LLL 483 (492)
Q Consensus 481 n~K 483 (492)
+.|
T Consensus 213 s~~ 215 (263)
T PRK10803 213 SPK 215 (263)
T ss_pred Ccc
Confidence 754
No 116
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0097 Score=61.04 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=59.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
-+-..|-.+-|.++|.+|+..|+++|.+.. .....|.-+|.||..+|+++.|++++.++|-++|+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~---------------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSP---------------KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCC---------------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 355678888899999999999999998733 34788899999999999999999999999999999
Q ss_pred Cc
Q 011164 481 LL 482 (492)
Q Consensus 481 n~ 482 (492)
|.
T Consensus 522 n~ 523 (611)
T KOG1173|consen 522 NI 523 (611)
T ss_pred cH
Confidence 83
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0082 Score=61.56 Aligned_cols=76 Identities=20% Similarity=0.098 Sum_probs=62.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+++.|...|+.+.|.+|...+++++..++..... ...-..+++|++.++-|+++|.+||..++++|.+.|+
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 45788999999999999999999999665432111 0134678999999999999999999999999999998
Q ss_pred Cccc
Q 011164 481 LLLP 484 (492)
Q Consensus 481 n~KA 484 (492)
+..+
T Consensus 488 ~~~~ 491 (611)
T KOG1173|consen 488 DAST 491 (611)
T ss_pred chhH
Confidence 8754
No 118
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.10 E-value=0.0062 Score=71.18 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=61.2
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
....|..++++|++.+|+..|++++..-. ....++.++|.+++++++|++|+..++++|+++|+|
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN---------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34678899999999999999999998722 224678899999999999999999999999999999
Q ss_pred ccceee
Q 011164 482 LLPIFN 487 (492)
Q Consensus 482 ~KA~~r 487 (492)
..+++.
T Consensus 419 ~~a~~~ 424 (1157)
T PRK11447 419 TNAVRG 424 (1157)
T ss_pred HHHHHH
Confidence 877643
No 119
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.10 E-value=0.014 Score=54.70 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=67.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
-+..+-++|....+.|+|.+|+..|++..+-... .+....+.+.++.+++|.++|..|+...++=+.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3567889999999999999999999988864322 2233566778999999999999999999999999
Q ss_pred CCCCccceeeeec
Q 011164 478 KKFLLLPIFNIYA 490 (492)
Q Consensus 478 dp~n~KA~~r~~~ 490 (492)
.|.|+.+=|=.|+
T Consensus 101 yP~~~n~dY~~Yl 113 (254)
T COG4105 101 YPTHPNADYAYYL 113 (254)
T ss_pred CCCCCChhHHHHH
Confidence 9999987665554
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.97 E-value=0.012 Score=63.50 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..+.-+++.+..+...++|+.|+..|..++.--. --..-+|.++|.||+.+++|++|++.+.+||.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~--------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREG--------------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc--------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455677888888899999999999998886411 11267899999999999999999999999999
Q ss_pred cCCCCccceeee
Q 011164 477 QKKFLLLPIFNI 488 (492)
Q Consensus 477 ~dp~n~KA~~r~ 488 (492)
++|.|..|..++
T Consensus 478 ~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 478 LAPDNLDARITL 489 (895)
T ss_pred cCCCchhhhhhH
Confidence 999999886654
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.0047 Score=63.45 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=54.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
..|-.+-...++.+|+..|++||.+ .+-.+.+.+|+|.|++.+|.|++|+.++-.||.+.++
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALqL---------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQL---------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHhc---------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 4455555667899999999999987 5566889999999999999999999999999999876
No 122
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.92 E-value=0.07 Score=40.37 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.+....++|-.+|.+.+.++|+.+|+++|+-+.. .+.+-.++--++.+|.-.|+|.+++.++-.=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567779999999999999999999999987543 2346667777899999999999999988776655
No 123
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.92 E-value=0.0079 Score=70.30 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+..+|+.+..+|++.+|+..|+++++.-. ....++.++|.++.+++++++|+..++++++++|+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDP---------------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 456788899999999999999999998632 22557889999999999999999999999999999
Q ss_pred Cccceeee
Q 011164 481 LLLPIFNI 488 (492)
Q Consensus 481 n~KA~~r~ 488 (492)
+..++|..
T Consensus 528 ~~~~~~a~ 535 (1157)
T PRK11447 528 DPEQVYAY 535 (1157)
T ss_pred CHHHHHHH
Confidence 98776643
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.88 E-value=0.0071 Score=63.75 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
+.+..|+-.+.+++|.+|.+.++.++++ +++....|.+++.|++++++|+.|..++..++.++|+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 3345556667789999999999999887 6678888999999999999999999999999999999
Q ss_pred Cccceeeeec
Q 011164 481 LLLPIFNIYA 490 (492)
Q Consensus 481 n~KA~~r~~~ 490 (492)
|.-||-++..
T Consensus 552 ~~eaWnNls~ 561 (777)
T KOG1128|consen 552 NAEAWNNLST 561 (777)
T ss_pred chhhhhhhhH
Confidence 9888877643
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.87 E-value=0.031 Score=49.73 Aligned_cols=76 Identities=13% Similarity=-0.042 Sum_probs=52.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHH-------
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC------- 471 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~------- 471 (492)
+..+...|..+.+.|++.+|+..|+++++.-... .........++.|++..+.++++++.|+.++
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999862111 1122334555666666666999888555555
Q ss_pred HHHHhcCCCCc
Q 011164 472 TKVQQQKKFLL 482 (492)
Q Consensus 472 ~~al~~dp~n~ 482 (492)
.+++..+|.+.
T Consensus 144 ~~a~~~~p~~~ 154 (168)
T CHL00033 144 KQAIALAPGNY 154 (168)
T ss_pred HHHHHhCcccH
Confidence 46777788654
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.87 E-value=0.0077 Score=65.64 Aligned_cols=80 Identities=4% Similarity=-0.213 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..+..+...|.-....|+|++|.+.|..++.+ .+....+..|+|.+..+++++++|+..|.++|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34566677888888999999999999999987 445688999999999999999999999999999
Q ss_pred cCCCCccceeeeecc
Q 011164 477 QKKFLLLPIFNIYAR 491 (492)
Q Consensus 477 ~dp~n~KA~~r~~~~ 491 (492)
.+|+|..+++.++.+
T Consensus 149 ~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 149 GGSSSAREILLEAKS 163 (694)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999888776544
No 127
>PLN02789 farnesyltranstransferase
Probab=95.85 E-value=0.011 Score=58.35 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=41.7
Q ss_pred HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA 490 (492)
Q Consensus 444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~ 490 (492)
++-...++++++.+..++++|++++.+|+++|++||.|..||+++..
T Consensus 138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence 44557789999999999999999999999999999999999987653
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.0079 Score=57.02 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=56.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|..+.+.|.-+||+|+|+.|.++|+.|+.+- -...-+-+|+|+|+++.++|..|+.+.++.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---------------GyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---------------GYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc---------------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35566788899999999999999999999873 234667789999999999999999999998865
No 129
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.78 E-value=0.0045 Score=39.12 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH
Q 011164 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (492)
Q Consensus 421 ~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~ 469 (492)
+|++||++ ++-...+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37888877 55568999999999999999999873
No 130
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.77 E-value=0.016 Score=51.31 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCC
Q 011164 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-----------YKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 413 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~-----------~~~ai~~~~~al~~dp~n 481 (492)
.-+++|+.+|+.||++ ++.+...+.|++.+|..++. |++|..++.+|.+.+|+|
T Consensus 49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3467888888888876 66678889999999887653 999999999999999987
Q ss_pred ccceeeeec
Q 011164 482 LLPIFNIYA 490 (492)
Q Consensus 482 ~KA~~r~~~ 490 (492)
.+||+.+
T Consensus 114 --e~Y~ksL 120 (186)
T PF06552_consen 114 --ELYRKSL 120 (186)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 4666654
No 131
>PRK12370 invasion protein regulator; Provisional
Probab=95.72 E-value=0.0054 Score=65.78 Aligned_cols=64 Identities=9% Similarity=-0.087 Sum_probs=54.8
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
..+++.+|+..+++|+.. ++....++.++|.++..+++|++|+..++++++++|++..+++.+.
T Consensus 316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 379 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG 379 (553)
T ss_pred cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456689999999999986 2334677889999999999999999999999999999999887654
No 132
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.72 E-value=0.011 Score=57.50 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=62.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-----------CCCh-HH-HHHHHHH------HHHhHhHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-EE-KKQAKAL------KVACNLNNAACKLK 460 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~~-~~-~~~~~~~------~~~l~~N~a~~~lk 460 (492)
.-+...|+-+.+.|++.+|++.|++|++.-..+. ...+ ++ ...+... ...++..+|.++++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 3456778888899999999999999999754321 1111 11 1122222 23456789999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164 461 LKDYKQAEKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 461 ~~~~~~ai~~~~~al~~dp~n~KA~~r~ 488 (492)
+|++++|+..+.+++..+|+|+..+..+
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999998765544
No 133
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.71 E-value=0.012 Score=64.51 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=41.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+-..|..++++|++.+|+..|++++..-.. ...++.|++.++.++|+|++|+..+.++++.+|+
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD---------------LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 4456688888888888888888888875221 2334445555555555555555555555555554
Q ss_pred Cc
Q 011164 481 LL 482 (492)
Q Consensus 481 n~ 482 (492)
+.
T Consensus 351 ~~ 352 (656)
T PRK15174 351 TS 352 (656)
T ss_pred ch
Confidence 43
No 134
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.70 E-value=0.026 Score=53.11 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh--------cCHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLCT 472 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~--------~~~~~ai~~~~ 472 (492)
.+...|..+++.++|.+|+..|+++++....... ....+.+++.|+.++ +++.+|+..++
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ 139 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 4566789999999999999999999987543211 123577888888876 88999999999
Q ss_pred HHHhcCCCCccc
Q 011164 473 KVQQQKKFLLLP 484 (492)
Q Consensus 473 ~al~~dp~n~KA 484 (492)
+++..+|++..+
T Consensus 140 ~~~~~~p~~~~~ 151 (235)
T TIGR03302 140 ELIRRYPNSEYA 151 (235)
T ss_pred HHHHHCCCChhH
Confidence 999999998654
No 135
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.62 E-value=0.16 Score=41.65 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.+-.....|...++.+-|.+|...|++|+..-... +.++.=...-+..-||.-||.++.++++|++|+..++++|.+
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srti---P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTI---PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC---ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 34445677888899999999999999999875432 223333345566778999999999999999999999999865
No 136
>PLN02789 farnesyltranstransferase
Probab=95.60 E-value=0.015 Score=57.58 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=40.1
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCcccee
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
+.+.+++.+|+..+.++|.+ .+...+++++++.|+.+++ .+++++..++++++.+|+|..+|+
T Consensus 47 l~~~e~serAL~lt~~aI~l---------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 34567899999999999976 3333555555555555555 355566655666665555555554
No 137
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.0066 Score=60.43 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
..+-.+||..|..|+|.+|...|+.||+-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 45678999999999999999999999964
No 138
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.39 E-value=0.036 Score=46.35 Aligned_cols=67 Identities=16% Similarity=0.001 Sum_probs=54.7
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
+-+.|..+-..|+..+|+..|++++..-.. .+....++.++|.++..+|++++|+...++++...|+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 446677777899999999999999974211 3345568889999999999999999999999988776
No 139
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.39 E-value=0.009 Score=60.47 Aligned_cols=48 Identities=10% Similarity=-0.086 Sum_probs=42.2
Q ss_pred HHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc---eeeeec
Q 011164 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP---IFNIYA 490 (492)
Q Consensus 443 ~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA---~~r~~~ 490 (492)
.++-....++|++.+|+++++|++|+..|++||+++|++..| +|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAc 120 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKAC 120 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 455668899999999999999999999999999999999865 777653
No 140
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.33 E-value=0.016 Score=63.42 Aligned_cols=41 Identities=12% Similarity=-0.085 Sum_probs=34.6
Q ss_pred HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
...++.|+|.+++++++|++|+..++++++++|++..+++.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35678899999999999999999999999999988766554
No 141
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.23 E-value=0.084 Score=55.19 Aligned_cols=75 Identities=28% Similarity=0.215 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.+..+.+.+..+-.+++|++|...|+++++.+....... +......+.|+|-+|+++|+|++|.+.+.+|+.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566677888888889999999999999999987433221 345678899999999999999999999999998
Q ss_pred cC
Q 011164 477 QK 478 (492)
Q Consensus 477 ~d 478 (492)
+.
T Consensus 396 ~~ 397 (508)
T KOG1840|consen 396 IL 397 (508)
T ss_pred HH
Confidence 74
No 142
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.22 E-value=0.061 Score=52.13 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=56.5
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
.++-.+|+.++|..|..--..|+.+ +...+.+|+.|+++...+++..+|..+|..||++.|++.
T Consensus 136 NRA~AYlk~K~FA~AE~DC~~AiaL---------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 136 NRALAYLKQKSFAQAEEDCEAAIAL---------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHh---------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4666788888888888887778766 788999999999999999999999999999999999864
No 143
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.20 E-value=0.21 Score=41.10 Aligned_cols=81 Identities=17% Similarity=0.031 Sum_probs=65.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH----HHHhc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT----KVQQQ 477 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~----~al~~ 477 (492)
+--.|+..|+++++-+|+-.|++|+...+......+.+..++-.+.+...-|+|.-|-.+|+-+-.+++.. +|+.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44578999999999999999999999876654445556667777888888999999999999888888765 55666
Q ss_pred CCCCc
Q 011164 478 KKFLL 482 (492)
Q Consensus 478 dp~n~ 482 (492)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66554
No 144
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.14 E-value=0.036 Score=36.23 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
..+++|+|.+|..+++|++|+..+.+++++-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999999873
No 145
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.10 E-value=0.03 Score=62.89 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=61.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
+..+...|+.++++|+|.+|+..++++++.-. ....++..+|.+++++|+|++|+..++++++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDP---------------NDAEARFLLGKIYLALGDYAAAEKELRKALSLG 86 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34577899999999999999999999998622 235688899999999999999999999999998
Q ss_pred CCCccce
Q 011164 479 KFLLLPI 485 (492)
Q Consensus 479 p~n~KA~ 485 (492)
|.+..++
T Consensus 87 ~~~~~~~ 93 (899)
T TIGR02917 87 YPKNQVL 93 (899)
T ss_pred CChhhhH
Confidence 8765543
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.96 E-value=0.039 Score=50.19 Aligned_cols=104 Identities=17% Similarity=0.055 Sum_probs=75.4
Q ss_pred cEEEEEEEeeeeecccCCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 011164 371 TVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450 (492)
Q Consensus 371 ~l~~~v~l~~~~~~~~~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l 450 (492)
++.-+|.|..+.+--..-.|+.++ .|.-+-++|+-+=.-|-+..|.--++++|.+ .+....+
T Consensus 40 ~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~v 101 (297)
T COG4785 40 TLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEV 101 (297)
T ss_pred cHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHH
Confidence 344444444444433344555544 3445566777666667777787778888876 5556889
Q ss_pred HhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeeccC
Q 011164 451 NLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYARL 492 (492)
Q Consensus 451 ~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~l 492 (492)
++-++.-+...++|+.|.+.++-++++||.+.-|..++.++|
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 999999999999999999999999999999988887776654
No 147
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=0.018 Score=60.11 Aligned_cols=83 Identities=16% Similarity=0.011 Sum_probs=62.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc----------CCCChHHHHHHHHH---------HHHhHhHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------TSFGDEEKKQAKAL---------KVACNLNNAACKLK 460 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------~~~~~~~~~~~~~~---------~~~l~~N~a~~~lk 460 (492)
+.+...||-+--|++++.|+++++||+.+=+.. ....+|-...+.-+ ...+|+-++.+|+|
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 367889999988999999999999999753311 11223333333333 33457779999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCc
Q 011164 461 LKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 461 ~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+++++.|.-++.+|++++|.|.
T Consensus 502 qek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred cchhhHHHHHHHhhhcCCccch
Confidence 9999999999999999999885
No 148
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.94 E-value=0.029 Score=62.70 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=52.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHH------HHHHHHHHhHhHHHHHHHHhc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKK------QAKALKVACNLNNAACKLKLK 462 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~l~~N~a~~~lk~~ 462 (492)
+...|..+.+.+++.+|+..|++++..-.... ...++... ...+.... +.++|.++..++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 56777888899999999999999987632110 00001111 11122233 666777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCccceee
Q 011164 463 DYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 463 ~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
++.+|+..+.++++++|++..+++.
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777776655543
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.82 E-value=0.051 Score=41.30 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
....+++|+|.+|..+++|++|+..+++||++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999976
No 150
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.76 E-value=0.047 Score=61.38 Aligned_cols=91 Identities=19% Similarity=0.074 Sum_probs=57.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHHH------HHHHHHhHhHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACK 458 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~~------~~~~~~l~~N~a~~~ 458 (492)
.+..+...|..+++.|+|.+|+..|+++++.-..... ..++....+ .+....++..++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456678899999999999999999999875321100 000000111 111234566677777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164 459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r~ 488 (492)
.+++++++|+..+.++++++|++..++++.
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 777777777777777777777776665543
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.72 E-value=0.013 Score=42.92 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 452 LNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 452 ~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
+++|..+++.|+|++|+..++++++.+|+|..+++.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg 38 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLG 38 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 36899999999999999999999999999999887653
No 152
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.67 E-value=0.087 Score=53.51 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=23.0
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
.++++++.+|.+++++++|+..++++++.+|++.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 3456667777777777777777777777766553
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.59 E-value=0.19 Score=43.52 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=50.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
......|+.+|.+|+|.+|+..|++++..-.. ..+...+.+++|.|++.+++|++|+...+.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34556888999999999999999999975211 456677788999999999999999998866
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.55 E-value=0.089 Score=53.37 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=54.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
+.-+-.++.-+.++++|+.|+...++|+... +.....+..||.||+++++|+.|+...+-+-..
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELS---------------PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 5556778999999999999999999999883 345788999999999999999999888865444
No 155
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.54 E-value=0.037 Score=54.80 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
+++.....+=..||.+|--|+|..|+..-+.-|++.....+ +.-.-.+++|++.||+-+++|+.|++++.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 44556666778899999999999999988888876432211 334456899999999999999999999998
Q ss_pred HHhc
Q 011164 474 VQQQ 477 (492)
Q Consensus 474 al~~ 477 (492)
+|.+
T Consensus 261 tl~L 264 (639)
T KOG1130|consen 261 TLNL 264 (639)
T ss_pred HHHH
Confidence 8654
No 156
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.51 E-value=0.045 Score=55.47 Aligned_cols=69 Identities=20% Similarity=0.081 Sum_probs=57.8
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
.+.-+++.++.++|++.+++++.. .+....+..|+|.++++.|++++||...+..+.-+|+++..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l---------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL---------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 344456788899999999999987 33347788999999999999999999999999999999877
Q ss_pred eeee
Q 011164 485 IFNI 488 (492)
Q Consensus 485 ~~r~ 488 (492)
|...
T Consensus 411 w~~L 414 (484)
T COG4783 411 WDLL 414 (484)
T ss_pred HHHH
Confidence 6543
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.51 E-value=0.085 Score=32.70 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
..+...|..+++.|+|++|++.|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999986
No 158
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.50 E-value=0.069 Score=59.67 Aligned_cols=69 Identities=9% Similarity=-0.116 Sum_probs=49.5
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
...|..+...|++.+|+..+++++.... ....++.++|.++.+++++++|+..+++++.++|+|.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P---------------~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAP---------------GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 4566677788888889888888887632 2245677777777777777777777777777777776
Q ss_pred ccee
Q 011164 483 LPIF 486 (492)
Q Consensus 483 KA~~ 486 (492)
.+++
T Consensus 428 ~l~~ 431 (765)
T PRK10049 428 NLEV 431 (765)
T ss_pred HHHH
Confidence 5444
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.047 Score=50.85 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=61.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc---CHHHHHHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVQ 475 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~---~~~~ai~~~~~al 475 (492)
.+.+.+.++-++..++|++|.-||+..+-. .++...++.-+|-.++-++ ++.-|..++.++|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 446677888889999999999999998854 4445566666666655544 7899999999999
Q ss_pred hcCCCCccceeeeec
Q 011164 476 QQKKFLLLPIFNIYA 490 (492)
Q Consensus 476 ~~dp~n~KA~~r~~~ 490 (492)
+++|.|.-|||-+|+
T Consensus 219 kl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 219 KLNPKNLRALFGIYL 233 (289)
T ss_pred HhChHhHHHHHHHHH
Confidence 999999999998875
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.41 E-value=0.062 Score=58.65 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=67.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+.+.|--+|..|++..|...+.+|+..+......++. ....+++.+|+|.|.-+++++..|-..+..+|...|+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-----~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-----KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-----ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 45567778888999999999999988775432221111 3455888999999999999999999999999999999
Q ss_pred Cccceeee
Q 011164 481 LLLPIFNI 488 (492)
Q Consensus 481 n~KA~~r~ 488 (492)
++.|+.|.
T Consensus 529 YId~ylRl 536 (1018)
T KOG2002|consen 529 YIDAYLRL 536 (1018)
T ss_pred hHHHHHHh
Confidence 99999987
No 161
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.38 E-value=0.13 Score=52.31 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------CCChHHHHHHH-----------HHHHHhHhHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQAK-----------ALKVACNLNNAA 456 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~-----------~~~~~l~~N~a~ 456 (492)
.+...|..+++.|+|.+|...|.++++.-.... ...++....+. .....++++++.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 445667777888888888888888775311000 00000001111 112346778999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 457 CKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 457 ~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
++++.+++++|+..++++++.+|++..+++.
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 219 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASIL 219 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence 9999999999999999999999988877654
No 162
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.036 Score=60.41 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=67.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+...|+-++.+|+|..|++.|+.+++..- ......++.-||.+|++.+.|.+|.+....|+.+.|
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3456788999999999999999999998642 223467777899999999999999999999999999
Q ss_pred CCccceeeeecc
Q 011164 480 FLLLPIFNIYAR 491 (492)
Q Consensus 480 ~n~KA~~r~~~~ 491 (492)
.|.-..|++++.
T Consensus 748 ~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 748 SNTSVKFNLALV 759 (1018)
T ss_pred ccchHHhHHHHH
Confidence 999999888753
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.29 E-value=0.1 Score=32.48 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
|..+-.+|..++..++|.+|+..|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345678999999999999999999999986
No 164
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.044 Score=55.12 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC----CChH---------------HHHHHHHHHHHhHhHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS----FGDE---------------EKKQAKALKVACNLNNAACK 458 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~----~~~~---------------~~~~~~~~~~~l~~N~a~~~ 458 (492)
....+--.|.++...++-..|+..|++|++....+.. ..+. ....+++-...++.-|+.||
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4455667899999999999999999999998654321 2211 11233445567788899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
.|+++..+||.++..|+....-+..||+|++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999999999999999877778887753
No 165
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.059 Score=54.28 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=57.5
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
.||-+--++++++|+..|++||++ ++-...++.=++.=|+.|++-..||..++.|++++|.+-+|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 366666678899999999999997 44557778888888999999999999999999999988888
Q ss_pred eeee
Q 011164 485 IFNI 488 (492)
Q Consensus 485 ~~r~ 488 (492)
||-+
T Consensus 401 WYGL 404 (559)
T KOG1155|consen 401 WYGL 404 (559)
T ss_pred Hhhh
Confidence 8853
No 166
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.12 E-value=0.32 Score=38.65 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
..+.++|..|+....+...+......... .........|+|.++..+|++++|+..+++|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45789999999999999887543211110 22345568899999999999999999999999874
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.94 E-value=0.24 Score=48.18 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.6
Q ss_pred HHHHhHhHHHHHHHHh-cCHHHHHHHHHHHHhc
Q 011164 446 LKVACNLNNAACKLKL-KDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 446 ~~~~l~~N~a~~~lk~-~~~~~ai~~~~~al~~ 477 (492)
....++.|+|..|.+. +++++|+..+.+|+++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4466788899999888 9999999999999876
No 168
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.84 E-value=0.046 Score=57.23 Aligned_cols=73 Identities=18% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
++.-.|..+.|+++|+.|.-.|++|+.. .+-...+.+-++..+.++|+.++|++.+++|+-+||.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEI---------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcC---------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 3444444455555555555555555543 4556777788899999999999999999999999999
Q ss_pred Cccceeee
Q 011164 481 LLLPIFNI 488 (492)
Q Consensus 481 n~KA~~r~ 488 (492)
|+-..|.+
T Consensus 556 n~l~~~~~ 563 (638)
T KOG1126|consen 556 NPLCKYHR 563 (638)
T ss_pred CchhHHHH
Confidence 98655544
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=0.19 Score=47.60 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+.+.+-.+|+.|+|..|...|..-++-+..... ....++=|+.|++.+++|++|...+..+.+-.|+
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 3778888999999999999999988887654322 2344455677777777777777777777777777
Q ss_pred Cccc
Q 011164 481 LLLP 484 (492)
Q Consensus 481 n~KA 484 (492)
+.||
T Consensus 211 s~KA 214 (262)
T COG1729 211 SPKA 214 (262)
T ss_pred CCCC
Confidence 6665
No 170
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.76 E-value=0.13 Score=32.82 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
+...|+-+.+.|+|++|+..|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457899999999999999999998865
No 171
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=0.12 Score=52.58 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChH------HHHHHHHHHHHhHhHHHH
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDE------EKKQAKALKVACNLNNAA 456 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~------~~~~~~~~~~~l~~N~a~ 456 (492)
-..|..+--+|.-+|=.|++..|...+.++|++-..... .+++ ....+++....+|..|++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 345777888899999999998888888888875322111 1111 224456677889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164 457 CKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 457 ~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
.++-+++|++|+.++++++.++|+|.-++-.+|.+
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 99999999999999999999999998877666544
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.57 E-value=0.2 Score=52.95 Aligned_cols=63 Identities=11% Similarity=-0.086 Sum_probs=53.8
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
.|-.+..+|++.+|...|++|+.+- + ....|..++.++...|++++|++.+.+|++++|.++.
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~---------------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE---------------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4555566899999999999999872 2 2568889999999999999999999999999998763
No 173
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.39 E-value=0.14 Score=53.56 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=63.8
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+-.+|.-+..+|+.++|++.|++|+.. .....++..-++..++.|++-+.+|++|..++.+.++.+ +.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KW 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-cc
Confidence 445667777889999999999998842 134567788899999999999999999999999998864 66
Q ss_pred ccceeeeecc
Q 011164 482 LLPIFNIYAR 491 (492)
Q Consensus 482 ~KA~~r~~~~ 491 (492)
.||+|.+..+
T Consensus 338 Ska~Y~Y~~a 347 (468)
T PF10300_consen 338 SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHH
Confidence 8999987654
No 174
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.22 Score=49.66 Aligned_cols=69 Identities=12% Similarity=-0.065 Sum_probs=55.6
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
+....+.-+-.+|++.+++...+++|..... ..+++-++..+...+++++|+.++.+||.+||+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 3344555566788888888888888865332 568888999999999999999999999999999
Q ss_pred Cccce
Q 011164 481 LLLPI 485 (492)
Q Consensus 481 n~KA~ 485 (492)
|.+++
T Consensus 504 ~~~sl 508 (564)
T KOG1174|consen 504 SKRTL 508 (564)
T ss_pred chHHH
Confidence 98764
No 175
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.17 E-value=0.17 Score=56.50 Aligned_cols=90 Identities=13% Similarity=-0.040 Sum_probs=64.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHHHH------HHHHHhHhHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQAK------ALKVACNLNNAACK 458 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~~~------~~~~~l~~N~a~~~ 458 (492)
.+....+++-..|++|+|..|+..|+++++.-..... ..++....++ ......+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3446788999999999999999999999976443210 0111111111 11233455567899
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 459 LKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 459 lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
..+++|.+|+..++++++.+|+|..+++-
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~g 141 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISG 141 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999999999887753
No 176
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.06 E-value=0.44 Score=46.26 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHH
Q 011164 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (492)
Q Consensus 389 ~~~~~e~l~~a~~~K~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~a 467 (492)
.+++......+..+.+.|..+++++ +|..|....++|.++++... ..+.......+++..++.-+|.||+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 5677778889999999999999999 99999999999999986531 111223455788999999999999999988655
Q ss_pred HHHHHHHHhc
Q 011164 468 EKLCTKVQQQ 477 (492)
Q Consensus 468 i~~~~~al~~ 477 (492)
.+ |.++++.
T Consensus 104 ~k-a~~~l~~ 112 (278)
T PF08631_consen 104 EK-ALNALRL 112 (278)
T ss_pred HH-HHHHHHH
Confidence 55 6666544
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.06 E-value=0.12 Score=55.22 Aligned_cols=84 Identities=18% Similarity=0.013 Sum_probs=54.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC---------------CChH------HHHHHHHHHHHhHhHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---------------FGDE------EKKQAKALKVACNLNNAAC 457 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~---------------~~~~------~~~~~~~~~~~l~~N~a~~ 457 (492)
+..+...|-.+-.+|++.+|.+.|..|+.+-..... --.+ +.-++++.....|.+++-+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 344577888888899999999999999865221100 0000 1123445556667777777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 458 KLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 458 ~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+.++|+.++|.++++.|+++++.++
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCC
Confidence 7777777777777777777776665
No 178
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.87 E-value=0.72 Score=41.43 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.-..+.+.|+-+++-|++..|++.|.++..+... ....+.++.|+..+.+-.++|..+..+.++|-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33456778999999999999999999999887543 456778888888888889999999888888854
Q ss_pred c
Q 011164 477 Q 477 (492)
Q Consensus 477 ~ 477 (492)
+
T Consensus 102 ~ 102 (177)
T PF10602_consen 102 L 102 (177)
T ss_pred H
Confidence 4
No 179
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=92.73 E-value=0.79 Score=34.72 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHH
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNA 455 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a 455 (492)
+..|..+-.+|.+.=+.++|.+|+.+|..+++++...- ...++...+.-..++.=|+++|
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 45677778888899899999999999999999986532 2233444555555555566655
No 180
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=92.65 E-value=0.64 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHHH
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAAC 457 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~~ 457 (492)
..|..+-.+|.++=+.|+|.+|+.+|.+||.++...- ...++.....-..++.-|.+||-.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA 65 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888999999999999999999999885432 122233344444455555665543
No 181
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=0.45 Score=45.11 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
...=.|+.+|.+|+|.+|...|.++++-+...+.. ...++-++.|...+++-++|.....++++--|+
T Consensus 180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 34447889999999999999999999866554332 456777999999999999999999999999998
Q ss_pred Cccc
Q 011164 481 LLLP 484 (492)
Q Consensus 481 n~KA 484 (492)
...|
T Consensus 248 t~aA 251 (262)
T COG1729 248 TDAA 251 (262)
T ss_pred CHHH
Confidence 7654
No 182
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.40 E-value=1.2 Score=33.60 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhHhHHHHHHHH
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLK 460 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~l~~N~a~~~lk 460 (492)
+.|..+-.++-++=++|+|.+|+.+|++|+..|.... ..+++.....-..++.=|.|++-..-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999999875432 223334444455566667777665433
No 183
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.38 E-value=0.22 Score=49.83 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=20.4
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
..|..+..+|++.+|...|++++..-
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN 144 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667778888999999888888753
No 184
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.32 E-value=0.12 Score=43.51 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
+-.|.+-+|..+.|+++|+.++.+|+..|+.+|+|..|+
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345666799999999999999999999999999998763
No 185
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.18 E-value=0.92 Score=34.41 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
..|..+-.++.++=++|+|.+|+..|+.|+.++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999998754
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.36 Score=48.18 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=63.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
....+.-+||.+...++..+|+-.|+.|.++ .+-+..+|--+-.||+..+++++|...++.+++.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 3456677889999999999999999988887 5567889999999999999999999999999999
Q ss_pred CCCCccce
Q 011164 478 KKFLLLPI 485 (492)
Q Consensus 478 dp~n~KA~ 485 (492)
-|+|.|+|
T Consensus 398 ~~~sA~~L 405 (564)
T KOG1174|consen 398 FQNSARSL 405 (564)
T ss_pred hhcchhhh
Confidence 99998876
No 187
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.10 E-value=1.1 Score=36.99 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=55.3
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
-....+-+.|+|.+++..-.++|+|++......+++ -.+-+.+-.|+|.++--+|+.++|+..++.+-++
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556788999999999999999999877766665 4556778889999999999999999999988654
No 188
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.94 E-value=0.84 Score=34.59 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
++.|..+-.+|...=+.|+|++|+.+|..||.++..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999999999998754
No 189
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.81 E-value=0.15 Score=49.39 Aligned_cols=71 Identities=15% Similarity=-0.018 Sum_probs=48.9
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
.....+++.+++.++.....++..... .+....++.-+|.++.+.|++++|+..+.+||+++|+|..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 344455677888888888877664311 1133677888999999999999999999999999999987
Q ss_pred ceee
Q 011164 484 PIFN 487 (492)
Q Consensus 484 A~~r 487 (492)
++..
T Consensus 182 ~~~~ 185 (280)
T PF13429_consen 182 ARNA 185 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 190
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.81 E-value=0.25 Score=47.32 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
...|......+...+++|+-++|...|..|+.+.. ....++.-++...-.-++.-+|-.++.+||
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP---------------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAP---------------TNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCC---------------CCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34444445567788999999999999999998732 224444444544444566778888999999
Q ss_pred hcCCCCccceeeeec
Q 011164 476 QQKKFLLLPIFNIYA 490 (492)
Q Consensus 476 ~~dp~n~KA~~r~~~ 490 (492)
.++|.|.+||-++.-
T Consensus 178 tisP~nseALvnR~R 192 (472)
T KOG3824|consen 178 TISPGNSEALVNRAR 192 (472)
T ss_pred eeCCCchHHHhhhhc
Confidence 999999999987653
No 191
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.78 E-value=0.79 Score=33.99 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
++.|..+-.+|..+=+.|+|.+|+..|++|+.++..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 355677778888888899999999999999998754
No 192
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.57 E-value=0.28 Score=52.16 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=64.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+-..|....+.++++.|...|++++.. ++-....++|++.+|+++++-.+|.....+||+.+-.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 4556788888899999999999999986 4556888999999999999999999999999999999
Q ss_pred Cccceeeeec
Q 011164 481 LLLPIFNIYA 490 (492)
Q Consensus 481 n~KA~~r~~~ 490 (492)
|.+.|-|+-+
T Consensus 586 ~w~iWENyml 595 (777)
T KOG1128|consen 586 HWQIWENYML 595 (777)
T ss_pred CCeeeechhh
Confidence 9888877643
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.26 E-value=0.099 Score=51.03 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
..+++-+|.|++.+++|++|.....++|+.+|+++.++.+.+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 566778999999999999999999999999999988877653
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.83 E-value=0.11 Score=38.75 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=31.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 455 AACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 455 a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
...|++.++|++|+..+++++.++|+++.+++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a 36 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRA 36 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 56789999999999999999999999998877543
No 195
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=90.71 E-value=1.4 Score=33.30 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
++.|..+-.+|...=+.|+|++|+..|.+|+.++..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567778888899999999999999999999998754
No 196
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.3 Score=47.33 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=53.5
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
.++-..+--|||..|+.--++|+.+ ++....+|.--|.|++.+++|..|...|.+.|+++-.+-+
T Consensus 124 NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 124 NRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4444455567889998888888877 6677899999999999999999999999999998865443
No 197
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.32 E-value=0.84 Score=45.62 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=55.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
.+...|..++..|++++|+..|.+++...... ......++.++|.+++.+|++++|+..+++++...|
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----------SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 34567888899999999999999999864321 223456788999999999999999999999987766
No 198
>PRK14574 hmsH outer membrane protein; Provisional
Probab=90.23 E-value=0.33 Score=54.21 Aligned_cols=91 Identities=9% Similarity=-0.051 Sum_probs=50.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------------CChHHHHH---HHHHHHHhHhHHHHHHHH--hc
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQ---AKALKVACNLNNAACKLK--LK 462 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~~~~---~~~~~~~l~~N~a~~~lk--~~ 462 (492)
.++..|..+..+|+|.+|+..|+++++.-..... ..++.... +.+.......=++..++. ++
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc
Confidence 3444566777789999999999999986432110 00000011 111111111113333333 45
Q ss_pred CHHHHHHHHHHHHhcCCCCccceeeeecc
Q 011164 463 DYKQAEKLCTKVQQQKKFLLLPIFNIYAR 491 (492)
Q Consensus 463 ~~~~ai~~~~~al~~dp~n~KA~~r~~~~ 491 (492)
++.+|+..++++++.+|+|.++++.++.+
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~ 212 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEI 212 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56558888888888888877777666544
No 199
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.20 E-value=0.53 Score=44.91 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhc------ccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc---cceeeee
Q 011164 419 SKRYEKAVKYIE------YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL---LPIFNIY 489 (492)
Q Consensus 419 ~~~Y~~al~~l~------~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~---KA~~r~~ 489 (492)
+..|++.+..++ .+..+.+++++.++.+...++.-.|..|++.+.|.+|+..|+++|.+||=+. |.+.+.+
T Consensus 244 ide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~l 323 (361)
T COG3947 244 IDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASL 323 (361)
T ss_pred HHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 344555555542 2345666788889999999999999999999999999999999999998443 4444444
Q ss_pred c
Q 011164 490 A 490 (492)
Q Consensus 490 ~ 490 (492)
.
T Consensus 324 a 324 (361)
T COG3947 324 A 324 (361)
T ss_pred H
Confidence 3
No 200
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.10 E-value=0.32 Score=54.25 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=19.2
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~ 488 (492)
++..+|.||-++|++++|+..++++|++||+|+-|+-|+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 344445555555555555555555555555554444443
No 201
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=89.89 E-value=1.5 Score=44.67 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh----------------------------------HHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------------------------------EEK 440 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~----------------------------------~~~ 440 (492)
.+.........|-++|+.|+|.+|+..|+..|..+....-.+. ++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 3444444555799999999999999999999987532111111 010
Q ss_pred H------------HHHHHHHHhHhHHHH-HHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 441 K------------QAKALKVACNLNNAA-CKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 441 ~------------~~~~~~~~l~~N~a~-~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+ .+.+....+-++.|+ ..+|.++|..|-..|++.|++.|+..
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 0 012222223334444 45689999999999999999988653
No 202
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=89.83 E-value=2.2 Score=32.16 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 432 (492)
++.|..+-.+|..+=+.|+|.+|+..|..|+..+...
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888999999999999999987553
No 203
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.79 E-value=0.87 Score=44.21 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=59.8
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhccc----------CCCChHH--------HHHHHHHHHHhHhHHHHHHHHhcCHHH
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYD----------TSFGDEE--------KKQAKALKVACNLNNAACKLKLKDYKQ 466 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------~~~~~~~--------~~~~~~~~~~l~~N~a~~~lk~~~~~~ 466 (492)
.|.-+++-|-+.+|...++.+|.-.+.. ...++.+ .-+..+..++.++-+|..+-.++++++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 4555566777777777777766543211 0111111 112245678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCccceeeee
Q 011164 467 AEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 467 ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
|++.+..||+++|.|+.|+--++
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeee
Confidence 99999999999999999876554
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.57 E-value=0.13 Score=37.73 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 458 KLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 458 ~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
+++.|+|++|+..+++++..+|+|..+++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 32 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLA 32 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 46789999999999999999999998887643
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.24 E-value=0.36 Score=45.35 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=50.7
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
|..+--+.-+++|..|.+.|.++++. +.-.+..-+|-|+|++-+++-.+|+...+.+++.+|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34444445678899999999888875 23346677899999999999999999999999999853
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.14 E-value=0.7 Score=44.39 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=63.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc----------------CCCChHHH------HHHHHHHHHhHhHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------------TSFGDEEK------KQAKALKVACNLNNA 455 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~----------------~~~~~~~~------~~~~~~~~~l~~N~a 455 (492)
.++.+--.|..++..+++..|...|++|+++.... ...+.+-. -..++..+...+=+|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 45566678999999999999999999999986431 11111111 233455666777789
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 456 ACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 456 ~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
..++..++|.+|+......|...|.+.
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999888654
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.06 E-value=0.063 Score=33.80 Aligned_cols=20 Identities=10% Similarity=-0.134 Sum_probs=17.9
Q ss_pred HHHHHhcCCCCccceeeeec
Q 011164 471 CTKVQQQKKFLLLPIFNIYA 490 (492)
Q Consensus 471 ~~~al~~dp~n~KA~~r~~~ 490 (492)
|++||+++|+|..||++...
T Consensus 2 y~kAie~~P~n~~a~~nla~ 21 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLAN 21 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHH
Confidence 78999999999999998754
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.04 E-value=1.9 Score=37.10 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCCChHHHH--HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCH
Q 011164 387 SWDMNTEEKI--EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464 (492)
Q Consensus 387 ~~~~~~~e~l--~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~ 464 (492)
.|-....+.+ .....++..+..+...|+|..|+..+++++.. ++..-.+|.-+-.|+..+|++
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence 4444444433 34556777777888999999999999999987 555677888889999999999
Q ss_pred HHHHHHHHHH
Q 011164 465 KQAEKLCTKV 474 (492)
Q Consensus 465 ~~ai~~~~~a 474 (492)
..|++.+.+.
T Consensus 113 ~~A~~~Y~~~ 122 (146)
T PF03704_consen 113 AEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988876
No 209
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.03 E-value=1.5 Score=43.10 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
-...+...|-+-.|++||..|++.|.- .+....+-.|+|+||.|+.=|+-+-+-..--|..-|++
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 344566677888999999999999864 44567788899999999998888877777668887866
Q ss_pred c
Q 011164 482 L 482 (492)
Q Consensus 482 ~ 482 (492)
.
T Consensus 219 t 219 (557)
T KOG3785|consen 219 T 219 (557)
T ss_pred H
Confidence 4
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=88.57 E-value=0.7 Score=40.59 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=46.0
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
.|-.+=.+++|++|+..|..|..+-..+ ..-+...|.||+.+++...|+.++..|++. |.+
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~-~~~ 137 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLLKND---------------YRPVFFTGQCQLLMRKAAKARQCFELVNER-TED 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCC---------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC-cch
Confidence 3334445789999999999988764332 222567999999999999999999999883 443
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.55 E-value=2 Score=39.50 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=50.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-----------CHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----------DYKQAEK 469 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-----------~~~~ai~ 469 (492)
..-..|..+|+.++|..|+..|++-++..... +....++..++.|++++. ...+|+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~ 111 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE 111 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHH
Confidence 34577889999999999999999999875542 123445556666666543 3568999
Q ss_pred HHHHHHhcCCCCcc
Q 011164 470 LCTKVQQQKKFLLL 483 (492)
Q Consensus 470 ~~~~al~~dp~n~K 483 (492)
.++..++.-|++.-
T Consensus 112 ~~~~li~~yP~S~y 125 (203)
T PF13525_consen 112 EFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHHHH-TTSTT
T ss_pred HHHHHHHHCcCchH
Confidence 99999999998753
No 212
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=88.40 E-value=0.94 Score=49.44 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC----------hHHHHHHHHHHHHh---------HhHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG----------DEEKKQAKALKVAC---------NLNNAACKL 459 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~----------~~~~~~~~~~~~~l---------~~N~a~~~l 459 (492)
+..+..++|.+|.+|++.+|.+....+++.-......- .+..+.+......+ |.-+|--..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 67788999999999999999999999998643211100 01112222222332 333555666
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 460 KLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 460 k~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
++++|.+|+.++++||.++|.|.+-+|++.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 788999999999999999999998888764
No 213
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=88.34 E-value=4.6 Score=30.86 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC------CCChHHHHHHHHHHHHhHhHHHHHHHHhc
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKLK 462 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~------~~~~~~~~~~~~~~~~l~~N~a~~~lk~~ 462 (492)
.+.|-+.-++|-.+=..|+.++|+..|+++++.|.... ....+++.....++.....|+..+--++.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~ 77 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ 77 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777777777999999999999999986532 23447788888888888888887766553
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.84 E-value=1.2 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
..+-..|..+.+.|++.+|+..|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667889999999999999999999987
No 215
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.67 E-value=5 Score=30.33 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~ 432 (492)
.+..|..+..+|..+=+.|+|++|+..|.+|++.+...
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888999999999999999988653
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.57 E-value=0.8 Score=30.47 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=24.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
+...|..+...|++++|++.|+++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567888899999999999999999873
No 217
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=3.3 Score=43.43 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=60.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+...+..+...|+|.+|++..++|++.+.......+...+........+..-+|.++..+|+-++|...+..+|..+|-+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 45666777789999999999999988765432222222344555566677789999999999999999999999988754
No 218
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.47 E-value=2 Score=40.86 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
.+.|.++|+.|+|.+|++.|+.+...+... .--.+...++.++..|+.++++.+..+..|-+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 388999999999999999999997654321 12456778888999999999999999999887653
No 219
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.43 E-value=3.4 Score=31.26 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
+.|..+-.+|+..=..|+|++|+..|..|+.++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999765
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.35 E-value=0.31 Score=51.17 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
..++|.+|+.+|+.|++. ++-+..++..+|+.+.++++|+.....=.+-|+++|.+.--|+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred hhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 457899999999999987 3445777788888888888888888888888888877654443
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.92 E-value=2.1 Score=36.72 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC---------------HHH
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD---------------YKQ 466 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~---------------~~~ 466 (492)
..+.|-.+|++++|..|+..|++-+++-...+. ..-+++=+++|++++.. ...
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~ 117 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQ 117 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------------ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHH
Confidence 346777899999999999999999997433222 23455668888888876 899
Q ss_pred HHHHHHHHHhcCCCCc
Q 011164 467 AEKLCTKVQQQKKFLL 482 (492)
Q Consensus 467 ai~~~~~al~~dp~n~ 482 (492)
|..++.+++..-|++.
T Consensus 118 A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 118 AFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHCcCCh
Confidence 9999999999999875
No 222
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.87 E-value=0.36 Score=46.71 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=19.4
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
..+|+|++.+..-.|++.-|.+++.-+|-.|++|..||.+
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 4444444444444555555555555555555544444433
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=86.42 E-value=2 Score=43.01 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
+.++-..|..++|.|++..-+..+++|+..--. + -.....+|+.++.+|+-+++|++|+++-..=|
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-------D----l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl 82 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-------D----LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL 82 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-------H----HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH
Confidence 567778999999999999999999999986321 1 34557778888888888888888877655433
No 224
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=86.38 E-value=7.1 Score=33.49 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
...+.+....+.....+..+++..+...+.+.+.-... ........+.+|.+++..|+|++|+..+++
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556667777777777888888887777776654322 224466778899999999999999999999
Q ss_pred HHhcCCCC
Q 011164 474 VQQQKKFL 481 (492)
Q Consensus 474 al~~dp~n 481 (492)
++...|++
T Consensus 74 ~~~~~~d~ 81 (145)
T PF09976_consen 74 ALANAPDP 81 (145)
T ss_pred HHhhCCCH
Confidence 99987543
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.16 E-value=0.85 Score=40.57 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCCccc
Q 011164 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 415 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~----------~~~~~ai~~~~~al~~dp~n~KA 484 (492)
|+.|.+.|+..... ++.....++|=+.+++.+ .-+++|+.-+.+||.++|+...|
T Consensus 7 FE~ark~aea~y~~---------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHh---------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45566666665543 334455566655555554 34788999999999999999999
Q ss_pred eeee
Q 011164 485 IFNI 488 (492)
Q Consensus 485 ~~r~ 488 (492)
+|..
T Consensus 72 lw~l 75 (186)
T PF06552_consen 72 LWCL 75 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.76 E-value=0.54 Score=47.87 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=58.2
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
++-..+|.++|..|+.-..+|++. ++..+.+|.-+|.+.+++++|.+|+.++.++..+.|+.++|
T Consensus 44 Ra~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 44 RALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred hhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 445667889999999998888876 57789999999999999999999999999999999998776
Q ss_pred e
Q 011164 485 I 485 (492)
Q Consensus 485 ~ 485 (492)
.
T Consensus 109 ~ 109 (476)
T KOG0376|consen 109 T 109 (476)
T ss_pred H
Confidence 4
No 227
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.74 E-value=0.94 Score=46.07 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 410 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
+..++..+|++...++++... ....++.-.|..+++.++|+.|+..++++.++.|++.++||..+
T Consensus 211 l~~~~E~~AI~ll~~aL~~~p---------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEALKENP---------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred HhcCcHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 344556677777777774322 12667778899999999999999999999999999999998753
No 228
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.73 E-value=1.9 Score=27.71 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
+..+-..|+.++..|+|.+|...|++++.....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 456778899999999999999999999987543
No 229
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=85.50 E-value=1.2 Score=41.77 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.+-..|-.+-+.|++..|...|.+++++... ....++|++..++-.|+++.|......+-..-+.
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPN---------------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccC---------------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 4457788889999999999999999998543 2566778888888888888888777776555443
Q ss_pred C
Q 011164 481 L 481 (492)
Q Consensus 481 n 481 (492)
+
T Consensus 201 d 201 (257)
T COG5010 201 D 201 (257)
T ss_pred c
Confidence 3
No 230
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=85.45 E-value=3.5 Score=43.61 Aligned_cols=60 Identities=30% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
+...|+|++|+..-.+..+.+- -+..++.-+|.+++++|++++|...+...|+.+|+|..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~---------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~ 73 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQIL---------------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD 73 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3456787777777665554432 24667778999999999999999999999999999863
No 231
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=84.99 E-value=4.2 Score=39.64 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHH----------hcccCCCChHHH--------------HHHHHHHHHhHhH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKY----------IEYDTSFGDEEK--------------KQAKALKVACNLN 453 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~----------l~~~~~~~~~~~--------------~~~~~~~~~l~~N 453 (492)
....+-+.|..+.+.|=|.+|-..|...... |-.....+.|-. ....-....+|+-
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 3455667788888888888888877654431 100000000101 1123455668888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 454 NAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 454 ~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
+|..++...+.+.|+....+||+.||+++.|
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA 216 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRA 216 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceeh
Confidence 8888888999999999999999999998865
No 232
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.99 E-value=5.4 Score=37.10 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=52.2
Q ss_pred HHHHHHHhhhHHHHc--ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 398 AAGKKKEQGNTLFKA--GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~--~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
.|.+.+..--+.|.. .++++|+..|++|-.++... +.......|++-.|.-...+++|.+||..+.++.
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444344444443 68999999999999997642 2344556677777777778999999999999987
Q ss_pred hcCCCC
Q 011164 476 QQKKFL 481 (492)
Q Consensus 476 ~~dp~n 481 (492)
...-+|
T Consensus 182 ~~s~~n 187 (288)
T KOG1586|consen 182 RSSLDN 187 (288)
T ss_pred HHhccc
Confidence 654333
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=0.79 Score=44.90 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=43.2
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
|--.|.-|+|++|+..|+-+..- .+ -...+..|+|-|++-+|.|.+|.....+|
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~--~~-------------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNK--DD-------------APAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhcc--CC-------------CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 44568999999999999988762 11 12567899999999999999998877665
No 234
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=5 Score=42.14 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=50.3
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHH-------------------HHHHHHHHHhHhHHHHHHHHhc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-------------------KQAKALKVACNLNNAACKLKLK 462 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~-------------------~~~~~~~~~l~~N~a~~~lk~~ 462 (492)
+--+|..+|+.++|.+|+..|+..++--. +..+++. .+..+--..+++|.|-.++-.+
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~---dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNS---DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 34578899999999999999998875311 1111111 0011123457899999999999
Q ss_pred CHHHHHHHHHHHHh
Q 011164 463 DYKQAEKLCTKVQQ 476 (492)
Q Consensus 463 ~~~~ai~~~~~al~ 476 (492)
+|.+|++-..+|+.
T Consensus 190 ky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 190 KYNQAIELLEKALR 203 (652)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999998888843
No 235
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.02 E-value=2.1 Score=47.95 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=59.9
Q ss_pred EEeeeeecccCCCCChH--HH----HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh
Q 011164 377 ELVSFEKEKESWDMNTE--EK----IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450 (492)
Q Consensus 377 ~l~~~~~~~~~~~~~~~--e~----l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l 450 (492)
.+++.......|.+-.- .+ ...-..+...|..+=+.|++++|...|+++|++ +...+.+
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---------------D~~n~~a 152 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---------------DRDNPEI 152 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------CcccHHH
Confidence 66666655555532110 11 112235667777777889999999999999997 3455788
Q ss_pred HhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 451 NLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 451 ~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
++|+|..|... +.++|+..+.+|+..
T Consensus 153 LNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 88888888888 888888888888755
No 236
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.27 E-value=7.7 Score=32.34 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=52.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
..+...|..+-..|++++|+...++++.-... .+....+...+|+|...++++++|+..+-.+|--
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45567888888999999999999999864322 1234556677899999999999999999888753
No 237
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.22 E-value=2.3 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=26.2
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
.+|.-++-+.+..++|.+|+.++.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356778888889999999999999999885
No 238
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=82.77 E-value=4 Score=38.66 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=52.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-----C-------------
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----D------------- 463 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-----~------------- 463 (492)
....|..+|+.++|..|+..|++.++.....+. ...++.-+|.|+..++ .
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~ 139 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH 139 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence 568889999999999999999999998654322 2455666777765554 1
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 011164 464 YKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 464 ~~~ai~~~~~al~~dp~n~ 482 (492)
-.+|+..+++.++.-|+..
T Consensus 140 ~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 2578899999999999764
No 239
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.22 E-value=2.2 Score=39.42 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=50.1
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 407 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
..+++.+++..|.+.|.+|+.+...+ ..-+..++-...|.+++..|...+.++|++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34578899999999999999875433 44556677778889999999999999999999664
No 240
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.58 E-value=4.3 Score=36.47 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
.....||.+-..|+|.+|...|++++.-+- .....+++-+|.+++.++++..|....++..+.+|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~f--------------A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIF--------------AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcccc--------------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344678889999999999999999996431 112567788899999999999999999888888764
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.59 E-value=6.2 Score=39.09 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=60.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-----------CCh----H--------HH-----HHHHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD----E--------EK-----KQAKALKVA 449 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-----------~~~----~--------~~-----~~~~~~~~~ 449 (492)
...+..+.|..+|...++.+|+..|++.|.-++.... ..+ + +. -+-..++..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668899999999999999999999987753210 000 0 00 111345667
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
.|.|+|..+-++.+|.+++.+|+-.+.+-
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lp 113 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLP 113 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 89999999999999999999999998874
No 242
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.48 E-value=2.2 Score=24.58 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
.+...|..++..++|..|+..|+++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3456788999999999999999999875
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=7.3 Score=36.55 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
..+++-...+.-+.++|++.|++++.+++.
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 334555555667788999999999988765
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.53 E-value=4.7 Score=24.21 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
.+-..|..+++.|++.+|+..|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34567888999999999999999998753
No 245
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.51 E-value=3.2 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.0
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHH
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCT 472 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~ 472 (492)
.++.|+|..+..+|++++|...+.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357899999999999999998765
No 246
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=77.34 E-value=5.8 Score=40.77 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-----------CCCh-HH-HHHHHHH-------HHHhHhHH
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-EE-KKQAKAL-------KVACNLNN 454 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~~-~~-~~~~~~~-------~~~l~~N~ 454 (492)
+.+.+.+.-.+|--.+.+|+|..|.+...++.+...... ...+ +. ...+... ...+..-+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 455677778888888999999999998888877532210 0000 10 1111110 01233345
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164 455 AACKLKLKDYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 455 a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
+..++..++|+.|+..+++.++..|+|..+++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ 191 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLK 191 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 77888899999999999999999999987654
No 247
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=77.28 E-value=5.4 Score=38.90 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=19.0
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..+..-+..||-++|+.++.+....++.+..+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 34444556666666666666666666665544
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.15 E-value=4.4 Score=38.37 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeeec
Q 011164 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIYA 490 (492)
Q Consensus 446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~~ 490 (492)
....++.|.|..|+-.++|..|...++++++.||.++-|..++++
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 456788899999999999999999999999999988766666554
No 249
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.97 E-value=7 Score=36.88 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH-hcCHHHHHHHHHHHHhc
Q 011164 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 415 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk-~~~~~~ai~~~~~al~~ 477 (492)
-.+|...|++|+.......+. ..+++..+.+|.|..+.. +++.++|+.-+.+|++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~-------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPP-------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCC-------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 478999999999987653222 278999999999997755 88999999999998753
No 250
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.14 E-value=8.3 Score=37.32 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
..++.|..+-.++...=+.++|.+|+..|+.|+.|+..
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 46778888888888888999999999999999999743
No 251
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.62 E-value=14 Score=37.91 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-----------CCCC--hHHHHHHHHH-------HHHhHhH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-----------TSFG--DEEKKQAKAL-------KVACNLN 453 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-----------~~~~--~~~~~~~~~~-------~~~l~~N 453 (492)
.+.+.+.+.-.+|-..+-+|+|.+|.+.-.++-+..+.. .... +.-...+... ......-
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~ 158 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT 158 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345566666777777778888888887766655431110 0000 0000111110 1111122
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 454 NAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 454 ~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
.+..++..++|++|+..++++++.+|+|+.++
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al 190 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVL 190 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 36688888888888888888888888887654
No 252
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=74.83 E-value=4.5 Score=39.46 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHH-HHHHHHHHHHhcCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK-QAEKLCTKVQQQKKF 480 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~-~ai~~~~~al~~dp~ 480 (492)
+--.+..+...|+|.+|.....+|+.. ++....++.|++.|...+|+.. .+-+..++.-..+|+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~---------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEK---------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh---------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 446777788899999999998888753 2223568889999999999984 455566666667887
Q ss_pred Cc
Q 011164 481 LL 482 (492)
Q Consensus 481 n~ 482 (492)
|+
T Consensus 269 h~ 270 (290)
T PF04733_consen 269 HP 270 (290)
T ss_dssp SH
T ss_pred Ch
Confidence 64
No 253
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.81 E-value=3.3 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.7
Q ss_pred HhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 451 NLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 451 ~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.+|+|.+|+++|+++.|..-.++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999964
No 254
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=71.67 E-value=16 Score=37.43 Aligned_cols=62 Identities=18% Similarity=0.062 Sum_probs=51.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
-+...|.-++++++|.+|...|++++..-.. ...+.-++.++.++|+.++|.+++.++|.+-
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~----------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD----------------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3456788899999999999999999986221 2335579999999999999999999998864
No 255
>PRK10941 hypothetical protein; Provisional
Probab=70.22 E-value=12 Score=35.96 Aligned_cols=66 Identities=11% Similarity=-0.090 Sum_probs=52.6
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
..=+.+.++++|.+|+++-.+.+.+...+ ..-+.-|+.+|.+++.|+.|+.+.+.-++.-|+.+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---------------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPED---------------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 33455678999999999999999874432 333456999999999999999999999999887764
Q ss_pred c
Q 011164 484 P 484 (492)
Q Consensus 484 A 484 (492)
|
T Consensus 251 a 251 (269)
T PRK10941 251 S 251 (269)
T ss_pred H
Confidence 4
No 256
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=27 Score=38.67 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-------------------------------CCCChHHHHH-
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------------------------TSFGDEEKKQ- 442 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------------------------~~~~~~~~~~- 442 (492)
++....+..+.|=.+++.|+|.+|+++|+.+|-.+.-. ....++....
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 36677788889999999999999999999888544210 0011111111
Q ss_pred -----------HHHHHHHhHhHHH-HHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 443 -----------AKALKVACNLNNA-ACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 443 -----------~~~~~~~l~~N~a-~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+.++...+-+-.| ..+.|+++|..|-..|.+.|++-|.-
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 1112222222223 36889999999999999999998744
No 257
>PRK04841 transcriptional regulator MalT; Provisional
Probab=69.50 E-value=21 Score=40.77 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=41.6
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|..++..|++.+|...|.+++........ ......++.|+|.+++..|++..|...+.+++.+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDV---------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333444555555555555555544321100 1123446789999999999999999999999886
No 258
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=68.73 E-value=19 Score=36.96 Aligned_cols=70 Identities=16% Similarity=0.047 Sum_probs=42.8
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+|.....+|-...+...|.+|.+.+...... .+.....+.=.|.++.++|+++.|..+..++++..|++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 4444444444444444555555544322111 111123345567888999999999999999999888764
No 259
>PRK10941 hypothetical protein; Provisional
Probab=68.72 E-value=8.9 Score=36.90 Aligned_cols=39 Identities=10% Similarity=-0.168 Sum_probs=35.8
Q ss_pred HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
..+...++.|+=.+|++.++|+.|+.+++.+|.++|+++
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH
Confidence 456788899999999999999999999999999999876
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=68.57 E-value=24 Score=30.98 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
...+.+++.++...+.+..|+..+.+++...|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 455777888888888888888888888887775
No 261
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.38 E-value=15 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=23.8
Q ss_pred HhHHHHHHHHhcCHHHHHHHHH--HHHhcCCCC
Q 011164 451 NLNNAACKLKLKDYKQAEKLCT--KVQQQKKFL 481 (492)
Q Consensus 451 ~~N~a~~~lk~~~~~~ai~~~~--~al~~dp~n 481 (492)
+.-+|.++...|+|++|+...+ -+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3457899999999999999944 888888765
No 262
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=68.09 E-value=9.9 Score=40.28 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=51.5
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
+.-+-..|+|.+|+....+||.. .+..+.+|.-.|.++-+.|++.+|.+..++|-.+|..+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 44444678899999999999876 45668899999999999999999999999999998754
No 263
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.51 E-value=18 Score=36.48 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
+.+.|.-+..-|++..|++.|.|+-.|+-+ ....+..+.|+-.+.+-+++|.+...+-++|-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 446677777899999999999998888654 4456778889999999999999999988888665
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=66.73 E-value=30 Score=35.95 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHhhhHH---H------HcccHHHHHHHHHHHHHHhcccCCCCh------HHHH----HHHHHHHH
Q 011164 389 DMNTEEKIEAAGKKKEQGNTL---F------KAGKYARASKRYEKAVKYIEYDTSFGD------EEKK----QAKALKVA 449 (492)
Q Consensus 389 ~~~~~e~l~~a~~~K~~Gn~~---f------k~~~~~~A~~~Y~~al~~l~~~~~~~~------~~~~----~~~~~~~~ 449 (492)
+-+++.+++.|.+-.+.-..+ | ......+|.+.|++|++.-+.....+. ...+ .-.....-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 667888888887766655544 2 234578999999999987654322111 0101 11123355
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~ 480 (492)
+...+|.|.-|+|+.++||+.+.+.++..|.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 5678999999999999999999999988774
No 265
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.40 E-value=6.2 Score=40.16 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=39.8
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 422 YEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 422 Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
|..||+.++...-....-...+..-.+++++..+-||+-+++|.+|++.++.+|-.
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666443221111223445667889999999999999999999999999754
No 266
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=66.12 E-value=9.6 Score=42.60 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=54.2
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcC-HHHHHHHHHHHHhcCCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKVQQQKKF 480 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~-~~~ai~~~~~al~~dp~ 480 (492)
....+.+....++|++|++.-+++|+. ++-...++.=++.++.-++. .++|-+++-.|.+++|+
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~---------------dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKE---------------DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhc---------------CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChh
Confidence 344667788899999999999999986 22334555567778888887 99999999999999999
Q ss_pred Cccc
Q 011164 481 LLLP 484 (492)
Q Consensus 481 n~KA 484 (492)
|.=|
T Consensus 70 nlLA 73 (1238)
T KOG1127|consen 70 NLLA 73 (1238)
T ss_pred hhHH
Confidence 9744
No 267
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.86 E-value=24 Score=33.44 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=31.5
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
..++.-+|-.|+-+++|++|..++.+++-++|.|+
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 34677899999999999999999999999999886
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.65 E-value=18 Score=34.99 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=50.5
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHHHHHHHHhc
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVQQQ 477 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~~~~~al~~ 477 (492)
..++|++..|...|.|+-..+... + .........+++|.+...++.+ +|+.|+...++|+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~---~----~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL---D----PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC---C----cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 367899999999999999876411 1 1224566788999999999999 999999999999877
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.40 E-value=11 Score=35.84 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
..+++-+|.|++.+++|++|..-...+|.-+++++..|-|
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4567779999999999999999999999999988776644
No 270
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=65.31 E-value=13 Score=40.34 Aligned_cols=76 Identities=13% Similarity=-0.029 Sum_probs=53.0
Q ss_pred HHHHHhhhHHH-HcccHHHHHHHHHHHHHH-hcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHH--HHHHHH
Q 011164 400 GKKKEQGNTLF-KAGKYARASKRYEKAVKY-IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVQ 475 (492)
Q Consensus 400 ~~~K~~Gn~~f-k~~~~~~A~~~Y~~al~~-l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~--~~~~al 475 (492)
..+-...-.+- ..=.++.-..--..+... +-- ++..+.+..-+|.|+++.|+-.-|.. ....++
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 34555554443 555566555554455544 433 33447777889999999998777777 888999
Q ss_pred hcCCCCccceee
Q 011164 476 QQKKFLLLPIFN 487 (492)
Q Consensus 476 ~~dp~n~KA~~r 487 (492)
++||.|.+|||.
T Consensus 748 r~dp~n~eaW~~ 759 (799)
T KOG4162|consen 748 RLDPLNHEAWYY 759 (799)
T ss_pred hhCCCCHHHHHH
Confidence 999999999985
No 271
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.02 E-value=38 Score=31.77 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhHHHH-cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 395 KIEAAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk-~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
+.+.|..+-.++-..|| +++|..|-..|-+|..+-....+ +.....+|.-.+.||-|. +..+|+.+..+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s---------khDaat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS---------KHDAATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC---------chhHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 56667777777777777 57788888888888776322111 111234444455555444 55666666665
Q ss_pred HHhc
Q 011164 474 VQQQ 477 (492)
Q Consensus 474 al~~ 477 (492)
++++
T Consensus 99 aieI 102 (288)
T KOG1586|consen 99 AIEI 102 (288)
T ss_pred HHHH
Confidence 5554
No 272
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.98 E-value=5.7 Score=38.29 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=31.4
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
...++-++.||....+|..|-.++.+.-.+.|.. +-||.|
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~--~qYrlY 83 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL--EQYRLY 83 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH--HHHHHH
Confidence 4456678999999999999999999988888864 334544
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=63.82 E-value=20 Score=35.45 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=57.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHH-HhcccCCCC------------------hHHHHHHHHHHHHhHhHHHHHHHHh-
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL- 461 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~-~l~~~~~~~------------------~~~~~~~~~~~~~l~~N~a~~~lk~- 461 (492)
.-+.++-++++|+..+|+..-+..++ .+....... .............+++=+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 34556667777777888888877777 333221000 0012233445556666566655556
Q ss_pred -----cCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 462 -----KDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 462 -----~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
+.+++++..+.++++++|++.|++++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 7788899999999999999999988754
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.63 E-value=32 Score=33.91 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=55.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC---CCCh---------H-HHHHHHHH----------HHHhHhHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGD---------E-EKKQAKAL----------KVACNLNNAA 456 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---~~~~---------~-~~~~~~~~----------~~~l~~N~a~ 456 (492)
++....+-.+|.+|++.+|...+.+.|+-...+. ++.. + ....++.. .+-++-=.|-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 4455666778899999999999999887654320 0000 0 11122222 2223334789
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCC
Q 011164 457 CKLKLKDYKQAEKLCTKVQQQKKFL 481 (492)
Q Consensus 457 ~~lk~~~~~~ai~~~~~al~~dp~n 481 (492)
|....|-|.+|...++++|++|+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcc
Confidence 9999999999999999999999865
No 275
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.48 E-value=20 Score=33.25 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
.++.++..-.+.=++.|+..|.+|+..-.... .. .-...+++=+|..+.++|++++|++.+.+++..-.
T Consensus 128 yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~--------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 128 YRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EG--------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CC--------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34455544444456677777777775422110 01 01123555689999999999999999999998743
No 276
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.44 E-value=31 Score=28.30 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC
Q 011164 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS 434 (492)
Q Consensus 387 ~~~~~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~ 434 (492)
.+..++...+..|..+..+|..++++|+.+.|--.|.|.+.+++..+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~ 73 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPK 73 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456778888999999999999999999999999999999998854333
No 277
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.12 E-value=4.4 Score=41.56 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHH-Hhccc-CCCChH-HHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYD-TSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (492)
Q Consensus 396 l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~-~l~~~-~~~~~~-~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~ 472 (492)
+..+...-..|.-+|+-+.|..++..|.+||+ ..... ..+... ...-...-.-.+++|.+..|+..++...|.+++.
T Consensus 280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 33455556778888999999999999999996 33211 010000 0011122334578899999999999999999999
Q ss_pred HHHhcCCCCccceeeee
Q 011164 473 KVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 473 ~al~~dp~n~KA~~r~~ 489 (492)
++...-..|+.-|.|.+
T Consensus 360 ~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLA 376 (696)
T ss_pred HHHHHHhcCcHHHHHHH
Confidence 99988888888888754
No 278
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=61.08 E-value=17 Score=23.44 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=22.6
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIE 430 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~ 430 (492)
-..|.--...++|.+|+.-|++||.+..
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3456666778999999999999998754
No 279
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=59.57 E-value=34 Score=32.36 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHH-hcCHHHHHHHHHHHHh
Q 011164 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 415 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk-~~~~~~ai~~~~~al~ 476 (492)
-++|...|++|+.......+. ..+++.-+.+|.|..|.. +++.++|+.-+.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~p-------t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPP-------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCC-------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 458889999999886542222 277889999999998877 5889999988887764
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=59.32 E-value=23 Score=36.55 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=41.8
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
|..+.-.+++..|+..+.+|+.+ .+-....+.-+|....-.|+.++|+++.+++|+++|.-.+|
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L---------------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIH---------------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhc---------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 33333345566777777777655 22335566667777777888888888888888888855443
No 281
>PRK04841 transcriptional regulator MalT; Provisional
Probab=58.36 E-value=40 Score=38.50 Aligned_cols=67 Identities=6% Similarity=-0.084 Sum_probs=52.7
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
..|..+...|++.+|...|++++........ ....+.++..+|.++.++|++.+|.....+|+++-.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~---------~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRL---------MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 4555667889999999999999986432111 224566778899999999999999999999998864
No 282
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=58.09 E-value=63 Score=34.35 Aligned_cols=36 Identities=14% Similarity=-0.120 Sum_probs=29.5
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
.+|.=+|..++..++|++|...+++|++++|+ .-|+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~ 456 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNY 456 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHH
Confidence 44666788888899999999999999999984 4443
No 283
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=57.97 E-value=8.4 Score=40.93 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=54.3
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh----------------HHHHHH------HHHHHHhHhHHHHHHH
Q 011164 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------------EEKKQA------KALKVACNLNNAACKL 459 (492)
Q Consensus 402 ~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~----------------~~~~~~------~~~~~~l~~N~a~~~l 459 (492)
+-.+.-.+|..++|+.-+..-+..|+-. +++.+ |....+ +.-...|+-=+++.+-
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF---PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC---CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 4455667788888888887777776632 11111 111111 1112346667888888
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCcccee
Q 011164 460 KLKDYKQAEKLCTKVQQQKKFLLLPIF 486 (492)
Q Consensus 460 k~~~~~~ai~~~~~al~~dp~n~KA~~ 486 (492)
--++|.+||.++..||.++|+|...|+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 889999999999999999999976543
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=57.46 E-value=13 Score=36.93 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=53.5
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
.||.+..-+.|++|++.+++|+++.....+ .-+...++.-++--+-++++|++|+-+..+|+++-.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDD---------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCC---------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 678888888999999999999998754322 223456777889999999999999999999998853
No 285
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=56.32 E-value=5.5 Score=44.38 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=57.4
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
+|--+.+.+++..|+..++.|++. .+-...++.-++.+|...|+|..|+..+++|..++|.+.-+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 555566789999999999999987 44557889999999999999999999999999999987654
Q ss_pred eee
Q 011164 485 IFN 487 (492)
Q Consensus 485 ~~r 487 (492)
-|.
T Consensus 633 ~fk 635 (1238)
T KOG1127|consen 633 RFK 635 (1238)
T ss_pred HHH
Confidence 443
No 286
>PF15469 Sec5: Exocyst complex component Sec5
Probab=56.22 E-value=51 Score=29.51 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=46.0
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCC-------CChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 406 GNTLFKAGKYARASKRYEKAVKYIEYDTS-------FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 406 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
=.++.++|+|..|+..|.+|-.++..... ...+-...+..++..++.-+..+. ...++........++++
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~ 169 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLLELN 169 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhCC
Confidence 33445799999999999999999866421 111233344445555555444443 34666666677778887
Q ss_pred CCC
Q 011164 479 KFL 481 (492)
Q Consensus 479 p~n 481 (492)
+..
T Consensus 170 ~~~ 172 (182)
T PF15469_consen 170 VEE 172 (182)
T ss_pred CCC
Confidence 744
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.91 E-value=42 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
.+.-.+..|+.+|++|+|++|...|.+++.+++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 4556789999999999999999999999988753
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=53.97 E-value=7.2 Score=35.92 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.+..+.=.|--+-.+|+|..|...|...+.+ ++..--.++||+.++.--|+|+-|.++..+--+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---------------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---------------CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 44556666788888999999999999888876 445567789999999999999999999999999
Q ss_pred cCCCCc
Q 011164 477 QKKFLL 482 (492)
Q Consensus 477 ~dp~n~ 482 (492)
.||+++
T Consensus 162 ~D~~DP 167 (297)
T COG4785 162 DDPNDP 167 (297)
T ss_pred cCCCCh
Confidence 999876
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.50 E-value=68 Score=29.19 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~ 472 (492)
...+.+..++..+++..|...-+.++..-.. +.++..+-.++|.+++.++.+++|+...+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 4556777888899999999888888854211 33444555566666666666666665443
No 290
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=53.13 E-value=17 Score=37.48 Aligned_cols=35 Identities=11% Similarity=-0.178 Sum_probs=29.5
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
+-+..=++..+++.|+.++|++.+.+++.++|++.
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 34445577789999999999999999999999863
No 291
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=50.19 E-value=1.1e+02 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.3
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhc
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYIE 430 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l~ 430 (492)
.+.++=.+|.|..|...|..++....
T Consensus 6 ~Ae~LE~kGl~RRAA~rW~evm~~~~ 31 (90)
T PF06069_consen 6 KAEELEAKGLWRRAATRWLEVMDLAE 31 (90)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHcC
Confidence 45566688999999999999998754
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=49.93 E-value=52 Score=34.32 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
+..+.-+-|.|+.++|++.|+..++..... -...++.|+.-|++.+++|.++-.-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~-------------~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc-------------chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 446667778999999999999999864321 1355788999999999988876554443
No 293
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=49.82 E-value=76 Score=26.99 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
+.+..+..++..+--+++-++|+.-..+|+.+.... ....-..|..++..|-++++-+.|..++..|-+
T Consensus 75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 344555566666666788899999999999874321 233445688899999999999999999999877
Q ss_pred cCCC
Q 011164 477 QKKF 480 (492)
Q Consensus 477 ~dp~ 480 (492)
+-..
T Consensus 144 LGS~ 147 (175)
T KOG4555|consen 144 LGSK 147 (175)
T ss_pred hCCH
Confidence 7543
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.67 E-value=46 Score=30.38 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=41.1
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHH
Q 011164 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (492)
Q Consensus 408 ~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai 468 (492)
.+|-+.+-.+|+..|-++|.+..... .+.+.++.-||-.+.++++++.|=
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~-----------~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDD-----------NFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCC-----------CCCHHHHHHHHHHHHHhcchhhhh
Confidence 45668899999999999999876543 344778888999999999999874
No 295
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.76 E-value=42 Score=35.62 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=29.3
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
.++-++.+++-+++-..|+++...|+.++|+|+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 455678889999999999999999999999886
No 296
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=47.37 E-value=1.1e+02 Score=26.67 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHH
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQ 475 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al 475 (492)
.........+|.+++.|+.+.|.+.-+-+-.-+... ...+ --...-..|+|..+++.|+|.+|-.....|+
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP--------L~~~~~av~~A~~ll~~~k~~eA~~aL~~A~ 144 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP--------LAQTPAAVKQAAALLDEGKYYEANAALKQAL 144 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE--------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC--------HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345667889999999999999976554333211100 0000 0123445689999999999999999888887
Q ss_pred h
Q 011164 476 Q 476 (492)
Q Consensus 476 ~ 476 (492)
+
T Consensus 145 ~ 145 (155)
T PF10938_consen 145 D 145 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 297
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.27 E-value=91 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCC
Q 011164 457 CKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 457 ~~lk~~~~~~ai~~~~~al~~dp 479 (492)
++..++++..|+..+.+++..+|
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 67777777777777777766555
No 298
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=46.83 E-value=70 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
.+--.|-.+|.+|+|++|+..|+.-++.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 4445678889999999999999999987654
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.48 E-value=49 Score=35.25 Aligned_cols=76 Identities=24% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc---cCCCC-hHHH-HHHHHHHHHhHhHHHH-HHHHhcCHHHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFG-DEEK-KQAKALKVACNLNNAA-CKLKLKDYKQAEKLCT 472 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~-~~~~-~~~~~~~~~l~~N~a~-~~lk~~~~~~ai~~~~ 472 (492)
-.++|..|+.+.+++++..|.+++.+|-.+-.- ..... .+-. .....-+..-.+|+|- ||+.+|++++|++-..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 346889999999999999999999999875321 11111 1212 2223344555678885 9999999999987655
Q ss_pred HH
Q 011164 473 KV 474 (492)
Q Consensus 473 ~a 474 (492)
+.
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 43
No 300
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.17 E-value=33 Score=19.86 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|+++-.+|.+.+++++|.+-+++-.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4778888999999999999988876653
No 301
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.47 E-value=42 Score=38.01 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=29.7
Q ss_pred eCCccEEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEEcC---------CCCCcccEEEEcCCcccchh
Q 011164 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKG---------HSEEEQLFEFKTDEEQVIDG 330 (492)
Q Consensus 267 ~~d~~v~k~il~~G~g~~~p~~g~~V~v~y~~~~~~g~~~d~~~---------~~~~~~~~~~~lg~~~~~~g 330 (492)
..+-++++-+.+.|.- ....-.+-+.+|..+....++|-..- .+..++...+.+++.+++|-
T Consensus 266 s~k~~vIyLiTKyG~i--hlYdlEt~tciy~NRIs~dtIFvta~~~~s~Gi~~iNrKGQVLsv~v~e~~IVpy 336 (1666)
T KOG0985|consen 266 SAKYGVIYLITKYGYI--HLYDLETGTCIYRNRISADTIFVTAPHDSSSGIQGINRKGQVLSVLVNEQNIVPY 336 (1666)
T ss_pred ccccCeEEEEeecchh--hhhhhhhhhhhhhhhccccceeEecccccCcchhhhhhcceEEEEEecCcceehh
Confidence 3455778878777752 11111122233444443333332110 12355666777777766643
No 302
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=66 Score=30.29 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
..++-.++|.++|..+..-=++|+.+ ..-.+..+.-+++|.+..+.|..||....+|..+
T Consensus 48 tnralchlk~~~~~~v~~dcrralql---------------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQL---------------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhc---------------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 45566667777787777777777776 3345777788999999999999999999999654
No 303
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.49 E-value=52 Score=31.74 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHH
Q 011164 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (492)
Q Consensus 403 K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~a 467 (492)
.+.+|.+.+..++.+|+..|.+.|.-- . ...++....+-...+|+...|...|+|..-
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg-----~--s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKG-----V--SKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCC-----C--ChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 467899999999999999999988531 1 112233444556677889999988876543
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.14 E-value=54 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=20.9
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 405 QGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
.+..+|++||+-+|++.-+..+..-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h 26 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH 26 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc
Confidence 5678899999999999988888643
No 305
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.11 E-value=64 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHhhhHHHHcccHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYE 423 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~ 423 (492)
.+...|-.++.+|+|.+|+..|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667889999999999999955
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.32 E-value=1.3e+02 Score=28.60 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHhhhHHHH-cccHHHHHHHHHHHHHHhccc
Q 011164 399 AGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYD 432 (492)
Q Consensus 399 a~~~K~~Gn~~fk-~~~~~~A~~~Y~~al~~l~~~ 432 (492)
+..+.+++-..|+ .++|++|..+..+|.+..+..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnn 64 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN 64 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 3344455555555 466777777777777665443
No 307
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.88 E-value=1.3e+02 Score=30.60 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=50.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHHHHHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVQ 475 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~ai~~~~~al 475 (492)
.+.....++..+|++++|..|.+.++..++-+.. .. . ...+.++|.+|..=. +|++|.+..+..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~------~~-----~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPG------RE-----E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------hh-----h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456677888999999999999999998864221 11 1 567888888888744 6888888888776
Q ss_pred hc
Q 011164 476 QQ 477 (492)
Q Consensus 476 ~~ 477 (492)
..
T Consensus 197 ~~ 198 (379)
T PF09670_consen 197 KR 198 (379)
T ss_pred HH
Confidence 54
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.16 E-value=68 Score=28.15 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=10.0
Q ss_pred hhhHHHHcccHHHHHHHHHH
Q 011164 405 QGNTLFKAGKYARASKRYEK 424 (492)
Q Consensus 405 ~Gn~~fk~~~~~~A~~~Y~~ 424 (492)
.|.-+.++|+|.+|++..+.
T Consensus 50 ~~~l~i~r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 50 DGWLHIVRGDWDDALRLLRE 69 (160)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 34444555555555555444
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=40.83 E-value=41 Score=32.51 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeeee
Q 011164 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNIY 489 (492)
Q Consensus 438 ~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~~ 489 (492)
+++..+++..+.++.-++-.+.-.++++.++...++-++++|-+.+++.+.+
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm 194 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLM 194 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4667788899999999999999999999999999999999999988877654
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.63 E-value=68 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCc
Q 011164 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLL 482 (492)
Q Consensus 446 ~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~ 482 (492)
-.......+|.+++..|+|++|++.+-++++.++++.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 3456777899999999999999999999999998763
No 311
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.96 E-value=62 Score=19.16 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=23.5
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..|+.+-.++.+.++++.|....++-.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577888899999999999998887654
No 312
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.91 E-value=1.1e+02 Score=31.17 Aligned_cols=81 Identities=23% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
+..+.|-..-++|-.+=..+++..|+..|+++|+++....+...... .+....-|...|+...||++-...+++--+
T Consensus 17 ~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k---~~~~~~~W~dAcaliQklkes~~~vr~Rl~ 93 (560)
T KOG2709|consen 17 AAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMK---NARKSEMWKDACALIQKLKESKSSVRHRLN 93 (560)
T ss_pred HHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCccccccc---ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666778888888899999999999999999876322221100 111222334444445555555555555555
Q ss_pred HHhc
Q 011164 474 VQQQ 477 (492)
Q Consensus 474 al~~ 477 (492)
+|+-
T Consensus 94 vL~k 97 (560)
T KOG2709|consen 94 VLKK 97 (560)
T ss_pred HHHh
Confidence 5543
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=38.29 E-value=1.4e+02 Score=31.05 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHh-----cccCCCChHHHHHHHHHHHHh----HhHHH-HHHHHhcCHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI-----EYDTSFGDEEKKQAKALKVAC----NLNNA-ACKLKLKDYKQAEK 469 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l-----~~~~~~~~~~~~~~~~~~~~l----~~N~a-~~~lk~~~~~~ai~ 469 (492)
..+|..|..+.++|+++-|..+|+++-++- -... - +.+.+..+...+ -.|.| .|++.+|+.++|++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~-g---~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSST-G---DREKLSKLAKIAEERGDINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHC-T----HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHh-C---CHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHH
Confidence 378999999999999999999999865431 1111 1 112223222222 23544 48899999999887
Q ss_pred HHHHH
Q 011164 470 LCTKV 474 (492)
Q Consensus 470 ~~~~a 474 (492)
-..++
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 65543
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.23 E-value=1e+02 Score=30.49 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCC---CChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 410 FKAGKYARASKRYEKAVKYIEYDTS---FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 410 fk~~~~~~A~~~Y~~al~~l~~~~~---~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
|..-.+......|.++|+.+..... ....+...++...+.++.++|.-..+.|-.+.|+...+..|+++=
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3445688999999999998854322 233456678888999999999999999999999999999999874
No 315
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=38.12 E-value=1.1e+02 Score=30.83 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=51.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.-+.-.|.-++|++.|.+|...++.|+++-.+ ..-+.=+|-++-++++..+|-....++|.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS----------------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44567899999999999999999999986322 344556889999999999999999999754
No 316
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.81 E-value=1.4e+02 Score=27.64 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCH-------HHHHHHHHHHHhcC
Q 011164 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY-------KQAEKLCTKVQQQK 478 (492)
Q Consensus 408 ~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~-------~~ai~~~~~al~~d 478 (492)
.+-....+.+|++.|.-|+......... ......+++.+|-+|--+++. ..|++.+.+|++..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445678999999999999774322111 336678888999999988884 45555555555543
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=37.75 E-value=39 Score=32.17 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 011164 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKK 479 (492)
Q Consensus 418 A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp 479 (492)
|.+.|.+|+.++... -..|+.+|..+...+++-.|+.+|-++|-..-
T Consensus 1 A~~~Y~~A~~l~P~~---------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~ 47 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---------------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI 47 (278)
T ss_dssp HHHHHHHHHHH-TTB---------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB
T ss_pred CHHHHHHHHHhCCCC---------------CCcccchhhhhccccchHHHHHHHHHHHhcCC
Confidence 788999999986543 56688888888888888899998888876543
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=36.61 E-value=2.8e+02 Score=31.12 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHhhhHHHH-cccHHHHH------HHHHHHHHHhccc-CCCChHHH---------HHHHHHHHHhHhHHHHHHHHhcCH
Q 011164 402 KKEQGNTLFK-AGKYARAS------KRYEKAVKYIEYD-TSFGDEEK---------KQAKALKVACNLNNAACKLKLKDY 464 (492)
Q Consensus 402 ~K~~Gn~~fk-~~~~~~A~------~~Y~~al~~l~~~-~~~~~~~~---------~~~~~~~~~l~~N~a~~~lk~~~~ 464 (492)
+..+.-.+|- ..+|++|. +.|+.||.++... -..+++-. .--.+.+..++-.+|-|.+++|.|
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 3444445543 45666654 5688888876432 12222111 112445677888899999999999
Q ss_pred HHHHHHHHHH
Q 011164 465 KQAEKLCTKV 474 (492)
Q Consensus 465 ~~ai~~~~~a 474 (492)
..|-.-+++|
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 9998888766
No 319
>PRK11906 transcriptional regulator; Provisional
Probab=36.26 E-value=36 Score=35.13 Aligned_cols=44 Identities=5% Similarity=-0.176 Sum_probs=37.1
Q ss_pred HHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 445 ~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~ 488 (492)
.....++.-++....-.++++.|+..+++|+.++|+...++|-.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 34456777788888889999999999999999999999888754
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=35.63 E-value=1.5e+02 Score=29.18 Aligned_cols=80 Identities=16% Similarity=-0.109 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhHHHHc------ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh------
Q 011164 394 EKIEAAGKKKEQGNTLFKA------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL------ 461 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~------~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~------ 461 (492)
.....+..+...|+-+... +++..++..|++|+++.+.. ...+.+.|..+.++
T Consensus 247 ~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~k~~~~~a~~~~~~~~~~~~ 311 (352)
T PF02259_consen 247 SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW---------------EKAWHSWALFNDKLLESDPR 311 (352)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---------------HHHHHHHHHHHHHHHHhhhh
Confidence 3444556666666666555 88999999999999874321 22233333332221
Q ss_pred -----------cCHHHHHHHHHHHHhcCCC-Cccceeee
Q 011164 462 -----------KDYKQAEKLCTKVQQQKKF-LLLPIFNI 488 (492)
Q Consensus 462 -----------~~~~~ai~~~~~al~~dp~-n~KA~~r~ 488 (492)
.--..|+.++-++|.+.++ ....+.|.
T Consensus 312 ~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~Rl 350 (352)
T PF02259_consen 312 EKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRL 350 (352)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHh
Confidence 1134589999999999876 34555554
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.00 E-value=91 Score=25.55 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=37.1
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
|..-..-|+++|+++..+. +.-..++.++|.-+--..-|++|+.-|.++|.+.
T Consensus 56 k~~yLl~sve~~s~a~~Ls---------------p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 56 KFRYLLGSVECFSRAVELS---------------PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhHHHHHHHhccC---------------hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 3334567788888888762 2236666666665555567999999999999874
No 322
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.69 E-value=18 Score=35.73 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=46.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQK 478 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~d 478 (492)
|.-+..+++.+.+.++...|++-|..|+.+ +.+ ...-|-=+..++.-+++|.+|-++...|+++|
T Consensus 148 a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~D--------------sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 148 AILYAKRASVFLKLKKPNAAIRDCDFAIEI-NPD--------------SAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhcccccceeeeccCCchhhhhhhhhhcc-Ccc--------------cccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 444557888899999999999999999975 211 12222234445556889999999999998776
No 323
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.67 E-value=84 Score=18.39 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=23.2
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|+.+-.+|.+.+++++|++.+.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3666778899999999999999987653
No 324
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.84 E-value=98 Score=23.39 Aligned_cols=28 Identities=18% Similarity=-0.088 Sum_probs=17.6
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
.-+..+|.-+=+.|+|.+|+.+++++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455566666667777776666666554
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.01 E-value=2.5e+02 Score=27.43 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=48.5
Q ss_pred cccCCCCChHHHHHHHH--HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh
Q 011164 384 EKESWDMNTEEKIEAAG--KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461 (492)
Q Consensus 384 ~~~~~~~~~~e~l~~a~--~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~ 461 (492)
...+|.-+..++++..- -+-..+..+.+.|.+.+|++.-++++.+ +++....+--+-+.+.++
T Consensus 262 ~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl---------------dpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 262 ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL---------------DPLSEQDNKGLMASLATL 326 (361)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---------------ChhhhHHHHHHHHHHHHh
Confidence 45577777777665432 2233445556789999999999999987 444444444555666777
Q ss_pred cCHHHHHHHHH
Q 011164 462 KDYKQAEKLCT 472 (492)
Q Consensus 462 ~~~~~ai~~~~ 472 (492)
|+--.|+.+++
T Consensus 327 gD~is~~khye 337 (361)
T COG3947 327 GDEISAIKHYE 337 (361)
T ss_pred ccchhhhhHHH
Confidence 77666666554
No 326
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=30.50 E-value=1.7e+02 Score=22.06 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 011164 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (492)
Q Consensus 391 ~~~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l 429 (492)
...+.++.|..+.+.|..++++|++..|+.++.=|--+|
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999987776554
No 327
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.33 E-value=1.9e+02 Score=28.99 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 394 e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
.+-+.+..+...|+.++..++|..|...|+.|..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999988654
No 328
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=28.83 E-value=1.1e+02 Score=29.63 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--ccceeeee
Q 011164 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFL--LLPIFNIY 489 (492)
Q Consensus 412 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n--~KA~~r~~ 489 (492)
.++.+.|...|+++++.+... ..+++.-...++++++.+.|..-+.+++..-+.. .+.+|.++
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~---------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSD---------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 567777899999999875532 3444455556677888888888888887664432 24454444
No 329
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.36 E-value=1.1e+02 Score=29.26 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=34.3
Q ss_pred HHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 444 ~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
......+..|+=+.++..++|..|..+..+.|.++|+++-
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~ 216 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY 216 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh
Confidence 5566778888999999999999999999999999988763
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.20 E-value=2.7e+02 Score=28.09 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=48.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--CCC-------Ch------HHHHHHHHHHHHhHhHHHHHHHHhcC
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--TSF-------GD------EEKKQAKALKVACNLNNAACKLKLKD 463 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--~~~-------~~------~~~~~~~~~~~~l~~N~a~~~lk~~~ 463 (492)
+..+...+.-+..+|++..|...-++||-.++.. +.+ .. -...+-+.+...++. ...+..+.|-
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r-~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR-YIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH-HHHHHHhcCc
Confidence 3344445555555666666666666666554321 001 00 011222344444443 5567778899
Q ss_pred HHHHHHHHHHHHhcCCC-Cc
Q 011164 464 YKQAEKLCTKVQQQKKF-LL 482 (492)
Q Consensus 464 ~~~ai~~~~~al~~dp~-n~ 482 (492)
|..|++.|.-.|.+||. ++
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999997 54
No 331
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.19 E-value=3.2e+02 Score=27.13 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHHHhhhHHHH---------cccHHHHHHHHHHHHHHhcccCC----------CChHHHHHHHHHHHH
Q 011164 389 DMNTEEKIEAAGKKKEQGNTLFK---------AGKYARASKRYEKAVKYIEYDTS----------FGDEEKKQAKALKVA 449 (492)
Q Consensus 389 ~~~~~e~l~~a~~~K~~Gn~~fk---------~~~~~~A~~~Y~~al~~l~~~~~----------~~~~~~~~~~~~~~~ 449 (492)
+.++.++++.|....+.-+++-. .--..+|.+.+++||+..+.... ..+.....-....+-
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 45566777766665555444421 23356777778888876543211 111111111223444
Q ss_pred hHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 450 CNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 450 l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
+...+|.|.-|+|+..+|+.-.....+-
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 5567899999999999999877665443
No 332
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=66 Score=33.78 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceeee
Q 011164 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFNI 488 (492)
Q Consensus 409 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r~ 488 (492)
+.-.|+-+.|+...+.++. ..++++..-++.-+|.|+.-+.+|.+|-.+|....... +..+|+|++
T Consensus 277 l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y~Y 342 (546)
T KOG3783|consen 277 LSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFYTY 342 (546)
T ss_pred HHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHHHH
Confidence 3344455555555555553 45688899999999999999999999999999988875 678899887
Q ss_pred ec
Q 011164 489 YA 490 (492)
Q Consensus 489 ~~ 490 (492)
..
T Consensus 343 fa 344 (546)
T KOG3783|consen 343 FA 344 (546)
T ss_pred HH
Confidence 65
No 333
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=27.74 E-value=2.7e+02 Score=28.93 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
.....+.+.-+|.+|+|.+|...-.-..+... ...+|.=+++|.+..++|.+|..+...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP----------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP----------------SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45667888999999999998654444444322 255677789999999999999986543
No 334
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.42 E-value=84 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=29.4
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
.-...+|...+..++|.-|.+-++.++..||+|..|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar 107 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEAR 107 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3456788889999999999999999999999997653
No 335
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.28 E-value=45 Score=34.47 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 410 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
-.++++++|...|.+||.. +.-.+++++-.|-|-+|.+.-..|..-.++|+.+=|.--+-||.
T Consensus 84 esq~e~~RARSv~ERALdv---------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDV---------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HhHHHHHHHHHHHHHHHhc---------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 3578889999999999975 44568888889999999998888888888888877754454443
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.17 E-value=1.9e+02 Score=27.23 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 417 ~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
..+...++|+..+.... ...+...+...+|.-|+++|+|++|+...+.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~---------~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYG---------QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45555666665543321 14566777778999999999999999999998543
No 337
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.14 E-value=4.4e+02 Score=23.32 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=38.0
Q ss_pred HHHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
........++..|+. -+-..-...++.++.++.. ......+=.++-.| ++.++|+.++.++.+|..
T Consensus 48 ~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r------------~~flF~LP~~L~~~-i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 48 SLNEASSKANSVFKPLLERREKADKLRNALEFLQR------------NRFLFNLPSNLREC-IKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHH-HHcCcHHHHHHHHHHHHH
Confidence 334444555555541 1122333445566665543 23333444455554 667999999999999976
Q ss_pred cC
Q 011164 477 QK 478 (492)
Q Consensus 477 ~d 478 (492)
+-
T Consensus 115 l~ 116 (182)
T PF15469_consen 115 LF 116 (182)
T ss_pred HH
Confidence 63
No 338
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=26.86 E-value=78 Score=35.03 Aligned_cols=35 Identities=9% Similarity=-0.195 Sum_probs=25.1
Q ss_pred HhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 449 ACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 449 ~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
..|+.+..++.+.++++.|...+++.++++|++..
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 34666666677777888888888888877776643
No 339
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.82 E-value=2.1e+02 Score=20.59 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=34.9
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHH--HHhcCHHHHHHH
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK--LKLKDYKQAEKL 470 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~--lk~~~~~~ai~~ 470 (492)
..|-.+|.+|+|-+|-+..+..-+.... + +......+.++|+++ ++.|+...|..-
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~------~-----~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPG------P-----ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-C------C-----HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCc------c-----hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5678899999999998888777642111 1 233344455555554 556678877654
No 340
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=25.57 E-value=98 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.2
Q ss_pred chhHHHHHhccCcCcEEEEEECCC
Q 011164 328 IDGLDRAVITMKKNEVALLTIAPE 351 (492)
Q Consensus 328 ~~gle~~l~~m~~Ge~~~i~ip~~ 351 (492)
-+-+..|+..|+.||++.+.+.+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 356889999999999999998764
No 341
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=25.51 E-value=2.6e+02 Score=23.96 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=33.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHH
Q 011164 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456 (492)
Q Consensus 399 a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~ 456 (492)
+.++.+++.+++.+|+|+-|+..-..++..- .+..+.+.++..+|.-++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~ad--------p~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFAD--------PDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999888887641 1223456666665554443
No 342
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=1.6e+02 Score=28.75 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~ 470 (492)
..-.++..+...+++..|...+..++...+. ...+..-+|.||+..|+.+.|..-
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---------------~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPE---------------NSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcc---------------cchHHHHHHHHHHHcCChHHHHHH
Confidence 3556788899999999999999999987432 245556688889988888666543
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=25.04 E-value=1.4e+02 Score=27.76 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=42.3
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
....++.+.+...+|+..-+.-++--..+ .-.+.+... .+.-.|+|++|...|+-+-+++|+..+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtd--------a~~Rhflfq-------LlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTD--------AGGRHFLFQ-------LLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcc--------ccchhHHHH-------HHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456777888888888877777642111 011222222 233478999999999999999987765
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.98 E-value=1.1e+02 Score=32.92 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=50.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHh----cCHHHHHHHHHH
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----KDYKQAEKLCTK 473 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~----~~~~~ai~~~~~ 473 (492)
....+...|. +.+++.+|...|..|.+. -.+..++++|.||..= .+...|...+.+
T Consensus 330 ~lg~~~~~g~---~~~d~~~A~~yy~~Aa~~-----------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 330 LLGVLYETGT---KERDYRRAFEYYSLAAKA-----------------GHILAIYRLALCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHHHHcCC---ccccHHHHHHHHHHHHHc-----------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 3445555666 557889999999999965 2377788999999873 478999999999
Q ss_pred HHhcCCCCccceee
Q 011164 474 VQQQKKFLLLPIFN 487 (492)
Q Consensus 474 al~~dp~n~KA~~r 487 (492)
|-+.+ ++.|.|+
T Consensus 390 aA~~g--~~~A~~~ 401 (552)
T KOG1550|consen 390 AAEKG--NPSAAYL 401 (552)
T ss_pred HHHcc--ChhhHHH
Confidence 98876 4454443
No 345
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.55 E-value=1.2e+02 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=25.3
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccC
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDT 433 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~ 433 (492)
=+|.-+|++++|++|++.|..|-..+....
T Consensus 323 y~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 323 YLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 478889999999999999999999886653
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.50 E-value=2.5e+02 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 404 EQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 404 ~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
-.+-.+||.|+|..|.+.-..+|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566779999999999998888876
No 347
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.96 E-value=2.7e+02 Score=22.41 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 011164 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (492)
Q Consensus 393 ~e~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~ 428 (492)
..+.+.+.+.-.+|-..+-.|||+.|.+.-.++-+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345677777788888888899999999998888765
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.87 E-value=1.7e+02 Score=21.31 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 453 NNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 453 N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
+.|.-.=+.|+|++|+..+.++++.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444444466777777777666543
No 349
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=3.4e+02 Score=28.51 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=46.9
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 411 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
-+|-|++|.+.-.++|...+.....+ -....+.-++..++-|++.|.+-.++|.+|++.-..+.+.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d-~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w 352 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQAD-LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW 352 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566677776667776643322111 1346677888999999999999999999999887777654
No 350
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=23.63 E-value=3.4e+02 Score=22.62 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=38.8
Q ss_pred HhhhHHHH-------cccHHHHHHHHHHHHHHhccc-----CCCChHHHHHHHHHHHHhHhHHHHHHHH-hcCHHHHHHH
Q 011164 404 EQGNTLFK-------AGKYARASKRYEKAVKYIEYD-----TSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKL 470 (492)
Q Consensus 404 ~~Gn~~fk-------~~~~~~A~~~Y~~al~~l~~~-----~~~~~~~~~~~~~~~~~l~~N~a~~~lk-~~~~~~ai~~ 470 (492)
+.|.++|| ..+|.+|-.+|.+-+.-++.. ...+.++...+..-...++.---..++- ..-|+++-+.
T Consensus 19 ~lg~elfKV~~~DE~~rk~~e~~~kykkk~e~l~k~~id~~~EmS~e~~~aLe~~~re~L~ea~~~~l~de~tfee~Ye~ 98 (140)
T PF10666_consen 19 QLGGELFKVSLDDEMRRKWIEADEKYKKKAEKLNKYNIDFDREMSSEEYRALEEQQREALKEAIEIFLGDENTFEECYEK 98 (140)
T ss_pred hhcceeeeeecChHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 44556665 457888888888877776432 2234444444443333333322222222 3346666666
Q ss_pred HHHHHhc
Q 011164 471 CTKVQQQ 477 (492)
Q Consensus 471 ~~~al~~ 477 (492)
|..++.+
T Consensus 99 ~k~~~~M 105 (140)
T PF10666_consen 99 CKDLVNM 105 (140)
T ss_pred HHHHHHH
Confidence 6655543
No 351
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=23.35 E-value=1.1e+02 Score=33.13 Aligned_cols=77 Identities=17% Similarity=0.030 Sum_probs=54.5
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChH----------HHHHHHHH-----HHHhHhHHHHHHHHhcCHHHHHHHHHHH
Q 011164 410 FKAGKYARASKRYEKAVKYIEYDTSFGDE----------EKKQAKAL-----KVACNLNNAACKLKLKDYKQAEKLCTKV 474 (492)
Q Consensus 410 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~----------~~~~~~~~-----~~~l~~N~a~~~lk~~~~~~ai~~~~~a 474 (492)
++.|+-..|.....+||.-+........| .....+.+ ...+++-.|..+....++++|...+.++
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888776543222211 11222332 3446677888888899999999999999
Q ss_pred HhcCCCCcccee
Q 011164 475 QQQKKFLLLPIF 486 (492)
Q Consensus 475 l~~dp~n~KA~~ 486 (492)
+.++|+|-.+|-
T Consensus 844 vk~d~d~GD~wa 855 (913)
T KOG0495|consen 844 VKKDPDNGDAWA 855 (913)
T ss_pred HccCCccchHHH
Confidence 999999988763
No 352
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.15 E-value=3.6e+02 Score=27.43 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=47.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc--CHHHHHHHHHH
Q 011164 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTK 473 (492)
Q Consensus 400 ~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~--~~~~ai~~~~~ 473 (492)
.....++..+|++.+|..|.+.+..+++-... .+ ..-...++.++|.||..=. +|++|.+..++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-----~~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLS-----AV-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-----hh-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33445677899999999999999999865211 11 2345778889999998855 57888887773
No 353
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.11 E-value=6.3e+02 Score=26.61 Aligned_cols=82 Identities=20% Similarity=0.123 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhhhHHHH-cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhc-CHHHHHH
Q 011164 392 TEEKIEAAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEK 469 (492)
Q Consensus 392 ~~e~l~~a~~~K~~Gn~~fk-~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~-~~~~ai~ 469 (492)
+..+++ |......|.-+|. -.|++.|....++|....+..+.+ ...+-..++=+|.||.... .+..|..
T Consensus 40 is~~ve-art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~Ka 110 (629)
T KOG2300|consen 40 ISFLVE-ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKA 110 (629)
T ss_pred ChHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHH
Confidence 333443 4444556666654 689999999999999876654433 3556667777899999988 7899999
Q ss_pred HHHHHHhcCCCCc
Q 011164 470 LCTKVQQQKKFLL 482 (492)
Q Consensus 470 ~~~~al~~dp~n~ 482 (492)
...+++++-.+++
T Consensus 111 lLrkaielsq~~p 123 (629)
T KOG2300|consen 111 LLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999876655
No 354
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=22.81 E-value=84 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=18.1
Q ss_pred cHhHHHHhccCcCccEEEEEecC
Q 011164 93 IKGWDIGIKTMKKGENAVFTIPP 115 (492)
Q Consensus 93 ~~gle~~l~~m~~Ge~~~~~i~~ 115 (492)
..-|..||.|.++|+.+.+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 44799999999999999998864
No 355
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.79 E-value=4.8e+02 Score=24.82 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhc
Q 011164 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQ 477 (492)
Q Consensus 398 ~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~ 477 (492)
.|..-...|+-+.++|.|-.|+.+++..++-+..- .. -...+--+-.+|.++|-.++|-. ..++|..
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t-~~-----------~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~ 232 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT-SA-----------VREALARLEEAYYALGLTDEAKK-TAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc-cc-----------hHHHHHHHHHHHHHhCChHHHHH-HHHHHHh
Confidence 34444567888889999999999999999764321 11 11222335567788888888766 6778888
Q ss_pred CCCCc
Q 011164 478 KKFLL 482 (492)
Q Consensus 478 dp~n~ 482 (492)
+..+.
T Consensus 233 N~p~s 237 (254)
T COG4105 233 NYPDS 237 (254)
T ss_pred cCCCC
Confidence 76443
No 356
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=22.47 E-value=1.1e+02 Score=22.49 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=18.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHH
Q 011164 401 KKKEQGNTLFKAGKYARASKRYEK 424 (492)
Q Consensus 401 ~~K~~Gn~~fk~~~~~~A~~~Y~~ 424 (492)
-+.++-|++|.+|+|++|.+.--.
T Consensus 8 l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 8 LYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 356788999999999999776433
No 357
>COG1278 CspC Cold shock proteins [Transcription]
Probab=22.37 E-value=1.5e+02 Score=21.88 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=26.8
Q ss_pred ecCCCCCCCCCC-CEEEEEEEEEEcCC-cEEEEcCCCCCcccEEEEcCCc
Q 011164 278 KEGDGFERPNEG-AVVKVKLIGKLQDG-TVFVKKGHSEEEQLFEFKTDEE 325 (492)
Q Consensus 278 ~~G~g~~~p~~g-~~V~v~y~~~~~~g-~~~d~~~~~~~~~~~~~~lg~~ 325 (492)
.+|.|.-.|..| .-|.|||+..-.+| +.+ .+++.+.|.+..+
T Consensus 12 ~KGfGFI~p~~G~~DvFVH~Sai~~~g~~~L------~eGQ~V~f~~~~g 55 (67)
T COG1278 12 TKGFGFITPEDGGKDVFVHISAIQRAGFRTL------REGQKVEFEVEQG 55 (67)
T ss_pred CCcceEcCCCCCCcCEEEEeeeeccCCCccc------CCCCEEEEEEecC
Confidence 357787888888 58999998876554 222 2444555555443
No 358
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.25 E-value=2.1e+02 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=28.7
Q ss_pred HHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccc
Q 011164 447 KVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLP 484 (492)
Q Consensus 447 ~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA 484 (492)
+..+.--..+++++.|+|++|.+-..+... ||++.|-
T Consensus 110 ~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 110 RKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 333444566788999999999999999988 8877653
No 359
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=21.71 E-value=2.5e+02 Score=29.52 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccce
Q 011164 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPI 485 (492)
Q Consensus 417 ~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~ 485 (492)
+-...|++|+.-++.+ +.+++|-.+-..|.+.|.+.-..|.++|..+|+|+.-|
T Consensus 89 rIv~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLW 142 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLW 142 (568)
T ss_pred HHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhH
Confidence 3345677777654432 55666655555555557777777777777777766433
No 360
>PF12854 PPR_1: PPR repeat
Probab=21.53 E-value=1.9e+02 Score=17.70 Aligned_cols=26 Identities=15% Similarity=-0.059 Sum_probs=21.6
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHH
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTK 473 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~ 473 (492)
...|+-+-.+|.|.|+.++|++-.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677788899999999999987654
No 361
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.14 E-value=1.1e+02 Score=29.87 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=34.1
Q ss_pred HHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCccceee
Q 011164 448 VACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLLPIFN 487 (492)
Q Consensus 448 ~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~KA~~r 487 (492)
..+-+|.|.-..+.|+-++|..-+..||.++|.|+.+|.+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e 155 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIE 155 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4455678888888999999999999999999999988754
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=1.2e+02 Score=29.11 Aligned_cols=61 Identities=11% Similarity=-0.044 Sum_probs=45.4
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCcc
Q 011164 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQQKKFLLL 483 (492)
Q Consensus 408 ~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~~dp~n~K 483 (492)
.+.+++++..|.+.-.+.+.+...+ ..=..-+++.|.+++-++-|+.+....++.=|+..-
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~d---------------p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPED---------------PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCC---------------hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 4456788888887777777663322 222346899999999999999999998888776653
No 363
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=20.91 E-value=1.1e+02 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.2
Q ss_pred ccHhHHHHhccCcCccEEEEEecC
Q 011164 92 VIKGWDIGIKTMKKGENAVFTIPP 115 (492)
Q Consensus 92 ~~~gle~~l~~m~~Ge~~~~~i~~ 115 (492)
+..=+..+|.|.++|+.+.+..|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 445689999999999999998764
No 364
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.36 E-value=1.6e+02 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhHhHHHHHHHHhcCHHHHHHHHHHHHh
Q 011164 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVQQ 476 (492)
Q Consensus 397 ~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~l~~N~a~~~lk~~~~~~ai~~~~~al~ 476 (492)
..+....++|.....++.|++|.+ --+++.+++.. ...+.+....+|.-+|..+.+++++++|+..|.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 567788899999999999999988 66777765532 2334556678889999999999999999999998854
Q ss_pred c
Q 011164 477 Q 477 (492)
Q Consensus 477 ~ 477 (492)
+
T Consensus 1002 i 1002 (1236)
T KOG1839|consen 1002 I 1002 (1236)
T ss_pred e
Confidence 4
No 365
>PHA02122 hypothetical protein
Probab=20.19 E-value=1.6e+02 Score=20.56 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.2
Q ss_pred CCCCEEEEEEEEEecCCCEEe
Q 011164 54 ENGDEVEVHYTGTLLDGTQFD 74 (492)
Q Consensus 54 ~~gd~V~v~Y~~~~~dg~~~~ 74 (492)
..||.|.++|++.. +|++|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 47899999999876 777654
No 366
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=1.6e+02 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 011164 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (492)
Q Consensus 395 ~l~~a~~~K~~Gn~~fk~~~~~~A~~~Y~~al~~l~~ 431 (492)
.+..|.-+...+.+.=+.+++.+|+-+|+.++.++-.
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e 47 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAE 47 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHH
Confidence 3455556666777788999999999999999998743
Done!