Query 011165
Match_columns 492
No_of_seqs 189 out of 669
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 2.4E-56 5.3E-61 476.3 37.7 317 141-463 149-486 (577)
2 PF04515 Choline_transpo: Plas 100.0 3.8E-50 8.3E-55 411.7 27.1 263 215-482 7-282 (334)
3 PF01102 Glycophorin_A: Glycop 49.5 19 0.00041 31.7 3.3 26 209-234 69-94 (122)
4 PF10110 GPDPase_memb: Membran 47.9 48 0.001 29.8 5.9 32 413-444 105-136 (149)
5 PF03788 LrgA: LrgA family; I 44.2 58 0.0013 27.3 5.4 31 228-260 31-61 (96)
6 cd03036 ArsC_like Arsenate Red 37.4 26 0.00056 29.9 2.3 30 419-448 2-31 (111)
7 PF05568 ASFV_J13L: African sw 37.2 44 0.00096 30.1 3.7 36 212-247 37-72 (189)
8 PRK13344 spxA transcriptional 36.5 22 0.00048 31.5 1.8 32 418-449 2-33 (132)
9 PF12273 RCR: Chitin synthesis 33.2 29 0.00062 30.6 1.9 13 221-233 16-28 (130)
10 PRK01655 spxA transcriptional 31.7 27 0.00058 30.9 1.5 32 418-449 2-33 (131)
11 PRK12559 transcriptional regul 29.8 32 0.00069 30.4 1.7 31 418-448 2-32 (131)
12 cd02977 ArsC_family Arsenate R 29.1 36 0.00077 28.5 1.8 30 419-448 2-31 (105)
13 cd03027 GRX_DEP Glutaredoxin ( 28.1 47 0.001 25.6 2.2 31 419-449 4-34 (73)
14 cd03035 ArsC_Yffb Arsenate Red 26.1 53 0.0011 27.8 2.3 32 419-450 2-33 (105)
15 PRK10853 putative reductase; P 26.1 43 0.00094 29.1 1.8 32 418-449 2-33 (118)
16 cd03032 ArsC_Spx Arsenate Redu 25.0 45 0.00097 28.6 1.7 31 418-448 2-32 (115)
17 TIGR01617 arsC_related transcr 24.0 61 0.0013 27.8 2.3 31 419-449 2-32 (117)
18 cd03418 GRX_GRXb_1_3_like Glut 23.9 66 0.0014 24.5 2.4 30 419-448 3-32 (75)
19 TIGR02189 GlrX-like_plant Glut 23.0 60 0.0013 27.1 2.1 29 418-446 10-38 (99)
20 PRK12438 hypothetical protein; 22.6 6.5E+02 0.014 30.1 10.8 9 352-360 205-213 (991)
21 PRK11200 grxA glutaredoxin 1; 21.3 76 0.0017 25.2 2.3 31 418-448 3-38 (85)
22 TIGR02181 GRX_bact Glutaredoxi 20.6 66 0.0014 25.0 1.7 29 419-447 2-30 (79)
23 TIGR02220 phg_TIGR02220 phage 20.4 80 0.0017 25.5 2.1 39 404-449 2-40 (77)
24 PF11710 Git3: G protein-coupl 20.3 6.7E+02 0.014 23.7 8.9 22 212-233 178-199 (201)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-56 Score=476.26 Aligned_cols=317 Identities=25% Similarity=0.412 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHhccCC--CCCC--hh----hHHHHHH
Q 011165 141 IWVLVITLILSVPICFLLLLLLKHYTKQLVYVALPFFVIVPTFINVYWF--VACTVSSS--CSDS--LP----LVYRILV 210 (492)
Q Consensus 141 ~~~i~~~~~is~~ls~~~l~llr~~a~~lvw~~i~~~~~~~~~~~i~~~--~~~~~~~~--~~~~--~~----~~~~~~~ 210 (492)
|.++...+.++.++|++++.++|++++.++|..+++++.+++......+ +......+ .... .. ....++.
T Consensus 149 w~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 228 (577)
T KOG1362|consen 149 WYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD 228 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999988887666543222 22222222 1110 00 1111222
Q ss_pred -HHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCeeeccC
Q 011165 211 -LVFVFLII-GVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLV-VYYAPIVVFLVFARLNGKIVPKE 287 (492)
Q Consensus 211 -~~i~~~i~-~i~ll~~~~~r~RI~~a~~il~~a~~~l~~~~~lllv~p~~~~~~~-~~~~~w~~~~v~l~~~G~~~~~~ 287 (492)
.+|+..++ .+.+++++.+|+||+++++++|+|++++.+.|+++ ++|..+++.+ ++++.|+...+++.+.| ++
T Consensus 229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~-~~p~~~~~v~~~~i~~wv~~~~~l~t~~---~~- 303 (577)
T KOG1362|consen 229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTL-FPPALTFFVLLLFISLWVFVALFLVTSG---PN- 303 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc-
Confidence 45555444 55777888999999999999999999999999997 5577776654 56788999999998888 22
Q ss_pred CCCCcceEECCCCchhHHHHHHHHH-HHHHHHHHhhhhhhhhheeeeEEeecCCC-CCCcchHHHHHHHhhcccchhHHH
Q 011165 288 SNGEYKCVWKQDSWVPAYFALAILT-MLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICL 365 (492)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~f~-~~W~~~fl~~v~~~tiAg~va~WYF~~~~-~~p~~pv~~s~~ra~~yh~GSi~~ 365 (492)
.+++..|++..+++ ...++++++. ++|++||+.|++|+++||++++|||++++ +.|..|+..|++|+++||+||+|+
T Consensus 304 ~~gg~~~~~~~~~~-~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 304 SEGGCACTYSGGSL-RILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred cCCCceeeccCCcc-hhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhh
Confidence 12211267776663 3334455555 99999999999999999999999999885 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCcchhHhHHHHHHHHHhc
Q 011165 366 SGLLICMVRIVRAAVDSARQEDV------PGFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRN 439 (492)
Q Consensus 366 GSLIvaiv~~lR~il~~~~~~~~------~~~~~~~l~Ccl~cle~~l~~~Nk~Ayi~iAi~G~~F~~SAk~a~~L~~rn 439 (492)
|||++++|+++|.++++++++.| .+++.||++||+||+|++++|+|||||+|+|||||+||+|||+||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 99999999999999999997644 358999999999999999999999999999999999999999999999999
Q ss_pred ccceeeehhhhhHHHHHHHHHHHH
Q 011165 440 LLSAVFVETVSTRLLAGIIFVISA 463 (492)
Q Consensus 440 ~~~~~~~d~i~~~iL~g~~~v~s~ 463 (492)
..+++..|.++++++++.++++..
T Consensus 463 v~~vv~~d~vs~~llflgk~l~~~ 486 (577)
T KOG1362|consen 463 VLRVVDVDLVSDFLLFLGKLLGAI 486 (577)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999966666553
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=3.8e-50 Score=411.68 Aligned_cols=263 Identities=24% Similarity=0.476 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeeccCCCCC---
Q 011165 215 FLIIGVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLVVYYAPIVVFLVFARLNGKIVPKESNGE--- 291 (492)
Q Consensus 215 ~~i~~i~ll~~~~~r~RI~~a~~il~~a~~~l~~~~~lllv~p~~~~~~~~~~~~w~~~~v~l~~~G~~~~~~~~~~--- 291 (492)
.+++++.++++++.||||+++++++|+|+++++++|++++++++..++.+++.++|+...+++++.|+.+.+..++.
T Consensus 7 ~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~~~~~ 86 (334)
T PF04515_consen 7 LILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNLPFSS 86 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCccc
Confidence 34445566777889999999999999999999999999977555555566788999999999999998876543221
Q ss_pred ---cceEECCCCchhHHHHHHHHHHHHHHHHHhhhhhhhhheeeeEEeecCCC-CCCcchHHHHHHHhhcccchhHHHHH
Q 011165 292 ---YKCVWKQDSWVPAYFALAILTMLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICLSG 367 (492)
Q Consensus 292 ---~~~~~~~~~~~~~~~~~~~f~~~W~~~fl~~v~~~tiAg~va~WYF~~~~-~~p~~pv~~s~~ra~~yh~GSi~~GS 367 (492)
+.++++.+++..++.++++|+++|+++|+++++|+++||++++|||++++ ++|++|+.+|++|+++|||||+|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gS 166 (334)
T PF04515_consen 87 GSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGS 166 (334)
T ss_pred ccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHH
Confidence 23677888888888899999999999999999999999999999999987 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCc-c-----hHHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCcchhHhHHHHHHHHHhccc
Q 011165 368 LLICMVRIVRAAVDSARQEDV-P-----GFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLL 441 (492)
Q Consensus 368 LIvaiv~~lR~il~~~~~~~~-~-----~~~~~~l~Ccl~cle~~l~~~Nk~Ayi~iAi~G~~F~~SAk~a~~L~~rn~~ 441 (492)
|+++++|++|.++++++++.+ + +++.||++||++|+|+++||+||+||+++||||++||+|||++++|++||+.
T Consensus 167 livaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~~n~~ 246 (334)
T PF04515_consen 167 LIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIKRNGL 246 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhch
Confidence 999999999999999988754 2 3778999999999999999999999999999999999999999999999999
Q ss_pred ceeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011165 442 SAVFVETVSTRLLAGIIFVISAVYTIAVSRLFISLLFQFLY 482 (492)
Q Consensus 442 ~~~~~d~i~~~iL~g~~~v~s~~~~~~~~~l~~~~~l~~~~ 482 (492)
++..+|++++.+++..++.+++ ++++++|++++.+.
T Consensus 247 ~~~~~~~l~~~~l~~~~~~i~~-----~~~~~~~~~~~~~~ 282 (334)
T PF04515_consen 247 RAIIVDGLGSFVLFLGKLFISL-----LCGLIAYLILSNSS 282 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhccc
Confidence 9999999999999987777774 66777777776543
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.46 E-value=19 Score=31.67 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 011165 209 LVLVFVFLIIGVLVWIFVANWHRIEL 234 (492)
Q Consensus 209 ~~~~i~~~i~~i~ll~~~~~r~RI~~ 234 (492)
.++++++.+.++++++.|++|||++.
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555545555666667766665
No 4
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=47.93 E-value=48 Score=29.78 Aligned_cols=32 Identities=9% Similarity=0.348 Sum_probs=28.3
Q ss_pred hhhhhHhhcCcchhHhHHHHHHHHHhccccee
Q 011165 413 FTINFAAITGEAYCSSARMTYELLKRNLLSAV 444 (492)
Q Consensus 413 ~Ayi~iAi~G~~F~~SAk~a~~L~~rn~~~~~ 444 (492)
++.-.+.+.++++.+|-|++|++.++|.++..
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~ 136 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRIL 136 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHH
Confidence 46667899999999999999999999988865
No 5
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=44.16 E-value=58 Score=27.26 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=24.9
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011165 228 NWHRIELTVQIIGIASDALSKNLGLFVALPLLT 260 (492)
Q Consensus 228 ~r~RI~~a~~il~~a~~~l~~~~~lllv~p~~~ 260 (492)
.+|+++. +-++.+++.+-+|.+++++++..-
T Consensus 31 ~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VG 61 (96)
T PF03788_consen 31 MFKIVKL--EWIEPAANFLLKNMALFFVPAGVG 61 (96)
T ss_pred HcCCccH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677776 889999999999999997765443
No 6
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=37.43 E-value=26 Score=29.93 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=26.9
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
-|||.+-|..+|+|.+++.+|++.+-..|-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDYTAIDI 31 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCceEEecc
Confidence 479999999999999999999999887764
No 7
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.23 E-value=44 Score=30.07 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 011165 212 VFVFLIIGVLVWIFVANWHRIELTVQIIGIASDALS 247 (492)
Q Consensus 212 ~i~~~i~~i~ll~~~~~r~RI~~a~~il~~a~~~l~ 247 (492)
+|+..++.++++++||.+++-+.++++-|+..+++.
T Consensus 37 aIvVliiiiivli~lcssRKkKaaAAi~eediQfin 72 (189)
T PF05568_consen 37 AIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFIN 72 (189)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccC
Confidence 444444556677778887777778888888776654
No 8
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=36.51 E-value=22 Score=31.54 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=28.3
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-|||.+-|.++|+|.+.+.+|++.+-..|-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 45899999999999999999999999887643
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.20 E-value=29 Score=30.60 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhHH
Q 011165 221 LVWIFVANWHRIE 233 (492)
Q Consensus 221 ~ll~~~~~r~RI~ 233 (492)
++++++..|||.+
T Consensus 16 ~~~~~~~~rRR~r 28 (130)
T PF12273_consen 16 LFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHhh
Confidence 3333444556655
No 10
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=31.68 E-value=27 Score=30.86 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=28.2
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-+||.+-|..+++|.+++.+|++.+-..|-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 45899999999999999999999998877643
No 11
>PRK12559 transcriptional regulator Spx; Provisional
Probab=29.80 E-value=32 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
+-|||.+-|..+|+|.+.+.++++.+-..|-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEe
Confidence 4589999999999999999999999887664
No 12
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=29.12 E-value=36 Score=28.48 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.7
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
-+||.+-|..+++|.+++.++++.+...|-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEYEFIDY 31 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 479999999999999999999999877763
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=28.07 E-value=47 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=26.1
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
-+|+.+-|..+++|-+++.++++.....|--
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCceEEEECC
Confidence 4788899999999999999999988776543
No 14
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.10 E-value=53 Score=27.80 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=28.2
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehhhh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~i~ 450 (492)
-+||.+=|.++|+|.+.+.+|++.+-..|-.-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 37999999999999999999999998877543
No 15
>PRK10853 putative reductase; Provisional
Probab=26.06 E-value=43 Score=29.06 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=28.7
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-+||.+=|.++|+|.+.+..|++.+.+.|-.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 45899999999999999999999999988754
No 16
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.01 E-value=45 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=27.7
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
+-+||.+-|..+|+|.+.+.++++.+-..|-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4589999999999999999999999888764
No 17
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=24.01 E-value=61 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=27.3
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
-+||.+-|..+++|.+++.++++.+-..|-.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 3789999999999999999999998887643
No 18
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=23.92 E-value=66 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=25.0
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeehh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
-+|+.+.|.-++++-+++.+++++....|-
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i 32 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDYEEIDV 32 (75)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCcEEEEEC
Confidence 478888899999999999999998877654
No 19
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=23.04 E-value=60 Score=27.06 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=21.9
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeee
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFV 446 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~ 446 (492)
+-+|++++|+-++++-+++.+++.+...+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~v 38 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVH 38 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 44777777777888888899988876554
No 20
>PRK12438 hypothetical protein; Provisional
Probab=22.62 E-value=6.5e+02 Score=30.10 Aligned_cols=9 Identities=22% Similarity=-0.001 Sum_probs=5.3
Q ss_pred HHHhhcccc
Q 011165 352 LRNAFGPSS 360 (492)
Q Consensus 352 ~~ra~~yh~ 360 (492)
+.++-+-|+
T Consensus 205 ~s~~ar~hL 213 (991)
T PRK12438 205 LTQAARVQL 213 (991)
T ss_pred CCHHHHHHH
Confidence 445555687
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=21.26 E-value=76 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=23.2
Q ss_pred HhhcCcchhHhHHHHHHHHHh-----cccceeeehh
Q 011165 418 AAITGEAYCSSARMTYELLKR-----NLLSAVFVET 448 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~r-----n~~~~~~~d~ 448 (492)
+-+|+++.|..+++|.+++.+ +++....+|-
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEEC
Confidence 457788888888888888888 7777766543
No 22
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=20.57 E-value=66 Score=25.00 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.1
Q ss_pred hhcCcchhHhHHHHHHHHHhcccceeeeh
Q 011165 419 AITGEAYCSSARMTYELLKRNLLSAVFVE 447 (492)
Q Consensus 419 Ai~G~~F~~SAk~a~~L~~rn~~~~~~~d 447 (492)
-+|+++.|.-+++|-+++.++++.....|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~d 30 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIR 30 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEE
Confidence 47888888888999999999998877664
No 23
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=20.41 E-value=80 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHhhchhhhhhHhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 404 LSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 404 e~~l~~~Nk~Ayi~iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+.+++|+|+.+ |+.|-.+++.+.++++.+.-+-..++.+
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~eg~~~~df 40 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNEGYTLEDF 40 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHcCCCHHHH
Confidence 46889999975 9999999999999999876665555443
No 24
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=20.26 E-value=6.7e+02 Score=23.73 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 011165 212 VFVFLIIGVLVWIFVANWHRIE 233 (492)
Q Consensus 212 ~i~~~i~~i~ll~~~~~r~RI~ 233 (492)
.+.+.+.++++.+++.+|+|++
T Consensus 178 ~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 178 IIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3344445567777778888876
Done!