Query 011165
Match_columns 492
No_of_seqs 189 out of 669
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fz4_A Putative arsenate reduc 31.7 15 0.00051 30.7 1.1 33 417-449 4-36 (120)
2 3l78_A Regulatory protein SPX; 29.9 18 0.00061 30.1 1.3 32 418-449 2-33 (120)
3 3f0i_A Arsenate reductase; str 28.4 31 0.0011 28.6 2.6 33 417-449 5-37 (119)
4 3rdw_A Putative arsenate reduc 27.1 33 0.0011 28.5 2.5 32 418-449 7-38 (121)
5 2lqo_A Putative glutaredoxin R 24.9 20 0.00069 28.4 0.7 30 418-447 6-35 (92)
6 3gkx_A Putative ARSC family re 24.6 33 0.0011 28.5 2.0 32 418-449 6-37 (120)
7 1rw1_A Conserved hypothetical 24.4 34 0.0012 27.9 2.1 33 418-450 2-34 (114)
8 1s3c_A Arsenate reductase; ARS 22.8 45 0.0015 28.5 2.6 33 418-450 4-36 (141)
9 2kok_A Arsenate reductase; bru 22.0 37 0.0013 28.0 1.9 32 418-449 7-38 (120)
10 1aba_A Glutaredoxin; electron 16.4 66 0.0023 24.2 2.1 30 419-448 3-36 (87)
No 1
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=31.70 E-value=15 Score=30.65 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.9
Q ss_pred hHhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 417 ~iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
++-+||.+-|..+|+|.+++.++++.+-..|-.
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~ 36 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAIDIK 36 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCEEEEETT
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCceEEEEec
Confidence 567899999999999999999999998776543
No 2
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=29.94 E-value=18 Score=30.07 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=27.8
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-+||.+-|..+++|-+++.++++.+-..|-.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~ 33 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVFQEHNIM 33 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEETT
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 45899999999999999999999998776543
No 3
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=28.42 E-value=31 Score=28.56 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.0
Q ss_pred hHhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 417 ~iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
++-+||.+-|..+|+|.+++.++++.+-..|-.
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 37 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKYL 37 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCEEECHH
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEEec
Confidence 467999999999999999999999998877643
No 4
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=27.06 E-value=33 Score=28.48 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.1
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-|||.+-|..+|+|.+++.++++.+-..|-.
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 38 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVVLYL 38 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEECTT
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 55899999999999999999999988776543
No 5
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=24.91 E-value=20 Score=28.36 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.4
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeeh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d 447 (492)
|-||+++.|.-+++|-+++.++++.....|
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~id 35 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDEVD 35 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEEEE
Confidence 457888888888888888999999887655
No 6
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=24.57 E-value=33 Score=28.48 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=28.3
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-+||.+-|..+|+|.+++.++++.+-..|-.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~ 37 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYTNRLIV 37 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEecc
Confidence 66899999999999999999999998876543
No 7
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.38 E-value=34 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=28.1
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i~ 450 (492)
+-+||.+-|..+++|-+++.++++.+-..|-..
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~~~~di~~ 34 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAYDFHDYKA 34 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCceEEEeecC
Confidence 347999999999999999999999987776543
No 8
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=22.77 E-value=45 Score=28.52 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=28.7
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i~ 450 (492)
+-|||.+-|..+|+|.+++.++++.+-..|-..
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~~~idi~~ 36 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEPTIILYLE 36 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEECTTT
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEECCC
Confidence 458999999999999999999999987776543
No 9
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=22.04 E-value=37 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.2
Q ss_pred HhhcCcchhHhHHHHHHHHHhcccceeeehhh
Q 011165 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (492)
Q Consensus 418 iAi~G~~F~~SAk~a~~L~~rn~~~~~~~d~i 449 (492)
+-+||.+.|..+++|.+++.++++..-..|-.
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~y~~~di~ 38 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGIDYTFHDYK 38 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCEEEEEHH
T ss_pred EEEEECCCChHHHHHHHHHHHcCCcEEEEeee
Confidence 56899999999999999999999998777644
No 10
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=16.45 E-value=66 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=22.8
Q ss_pred hhcCcc----hhHhHHHHHHHHHhcccceeeehh
Q 011165 419 AITGEA----YCSSARMTYELLKRNLLSAVFVET 448 (492)
Q Consensus 419 Ai~G~~----F~~SAk~a~~L~~rn~~~~~~~d~ 448 (492)
-+|+++ .|.-+++|-+++.+++++.-..|-
T Consensus 3 ~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI 36 (87)
T 1aba_A 3 KVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINI 36 (87)
T ss_dssp EEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEe
Confidence 467777 888888888889999888766543
Done!