BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011168
(492 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 254 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 313
L + +++ + FL+++G++ Q + + A+ + + +K V +L+ S
Sbjct: 179 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 238
Query: 314 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 368
+ +++ + P ++++S+ E+L +F+ +++SV L+ R P+ L S+E +
Sbjct: 239 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 296
Query: 369 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 424
+ + LE GF EI MI+R + T LTE ++F M +VKFP
Sbjct: 297 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 352
Query: 425 QYFGYSLEERIKPRY 439
Q F L ++K R+
Sbjct: 353 QVFNTRL-FKVKERH 366
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 28/282 (9%)
Query: 176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
L + ++ SS + + L + +D+ KI RR + E ++ + L
Sbjct: 30 LACFTYTTDKQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85
Query: 236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFPAVL--T 292
+LG + + +IL + P+ I S + T L L ++ + K+I++FP
Sbjct: 86 ELGADETAVASILERCPE--AIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143
Query: 293 YSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 345
++ K V F E+GL I ++LT PN+ +E+ +R E + +G
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEA 203
Query: 346 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 398
V + LL + P L S A +K EF E+GFT EI ++S+ G L+ S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262
Query: 399 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 436
+ ++ F D+D +LV K P YS LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 206 EKIKLITRRFPAFSYYSLEGK--IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSEN- 262
E IKLI +FP S+++++ + K V+F +LG+ I +L P + + +N
Sbjct: 128 ELIKLI-EQFPE-SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNK 185
Query: 263 ---LIPTMTFLENLGVD---KTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIG 316
I ++L+ G + K K++ + P +L S +K+T++FL E G ++ I
Sbjct: 186 QMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEIL 245
Query: 317 KVLTR--------CPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLK 368
++L++ CP SI+ + + F+ D+ L+ +CP L S+ L+
Sbjct: 246 QLLSKLKGFLFQLCPR----SIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPV-LE 300
Query: 369 PVTEFFLERGFTVEEI 384
+ L G ++ +I
Sbjct: 301 ERMQGLLREGISIAQI 316
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
L+ LG+ ++I L + +++ + FL++LG++ Q + + A+ +
Sbjct: 154 LVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 213
Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 350
+ +K V +L S I +++ P ++S+S+E + + L ++V
Sbjct: 214 DLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRD 273
Query: 351 LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFF 410
L+ R P+ L S+E + + + LE GF EI M+ + + LT N E F
Sbjct: 274 LVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKM----LTANKRKLTEIF 329
Query: 411 ----LTMDYDKSELVKFPQYFG---YSLEER 434
M+ +VKFPQ F + ++ER
Sbjct: 330 DYVHNVMNIPHHIIVKFPQLFNTRVFKIKER 360
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
L+ LG+ ++I L ++ +++ + FL++LG++ Q + + A+ +
Sbjct: 151 LVQLGVDLSKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 210
Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 350
+ +K V +L S I ++ P ++S+S+ E+L +F+ +++SV
Sbjct: 211 DLENLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSV-ERLDNRLGFFQK-ELELSVKKT 268
Query: 351 --LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWE 408
L+ R P+ L S+E + + + LE GF EI M+++ + T + L ++
Sbjct: 269 RDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTAN-KRKLTETFD 327
Query: 409 FFLT-MDYDKSELVKFPQYFG---YSLEER 434
+ M+ +VKFPQ F + ++ER
Sbjct: 328 YVHNVMNIPHHIIVKFPQVFNTRVFKIKER 357
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 17/194 (8%)
Query: 145 LVENFPNAPPPA------KQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYL 198
L E++ + PP + +++AV ++ P+ S L+ SE + L
Sbjct: 97 LCEDWDDVPPSSALEEISEEEAVKIIADPLLPPQSSTLRDYVDHSE---------TLTKL 147
Query: 199 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGIS 258
+ LG+DL +++ + E I ++ FL D+GI Q+ L K P + G
Sbjct: 148 VHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEE 207
Query: 259 LSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGK 317
L E L + +L++ + +++ R P +L +S +++ + F E+GLS +
Sbjct: 208 L-EALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVERLDNRLGFFKNELGLSVKKTKD 266
Query: 318 VLTRCPNIISYSIE 331
++ R P +++ +E
Sbjct: 267 LVIRFPRLLTGKLE 280
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
L+ LG+ +Q+ L + +++ + FL+++G++ Q + + P +L
Sbjct: 147 LVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGE 206
Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGVDVSV-- 350
+ ++ V +L I ++++R P ++ +S+ E+L +F++ LG+ V
Sbjct: 207 ELEALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSV-ERLDNRLGFFKNELGLSVKKTK 265
Query: 351 -LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEF 409
L+ R P+ L +E + + +E GF E+ + + + T S + L +++
Sbjct: 266 DLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTPKILTAS-KKRLRQTFDY 324
Query: 410 FLT-MDYDKSELVKFPQYFGYSLEERIKPRY 439
M + L +FPQ F L RIK R+
Sbjct: 325 LHNIMGIPHNMLTRFPQVFNSKL-LRIKERH 354
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 41/129 (31%)
Query: 200 ELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISL 259
ELG+ ++K K + RFP L GK++PV E L Q+C +
Sbjct: 256 ELGLSVKKTKDLVIRFPRL----LTGKLEPVKENL------------------QVCQV-- 291
Query: 260 SENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYE-MGLSAESIGKV 318
G ++ + ++ + P +LT S+++++QT D+L+ MG+ +
Sbjct: 292 ------------EFGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIP----HNM 335
Query: 319 LTRCPNIIS 327
LTR P + +
Sbjct: 336 LTRFPQVFN 344
>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii
GN=MTERFD3 PE=2 SV=1
Length = 385
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 28/282 (9%)
Query: 176 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 235
L + ++ SS + + L + +D+ KI RR + E ++ + L
Sbjct: 30 LACFTYTTDRQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85
Query: 236 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFPAVL--T 292
+LG + + IL + P+ I + T L L ++ + K+I++FP
Sbjct: 86 ELGADETAVANILERCPE--AIVCRPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143
Query: 293 YSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 345
++ K V F E+GL I ++LT N+ +E+ +R E + ++G
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNKQMVRILQESYLNVGGSEA 203
Query: 346 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 398
V + LL + P L S A +K EF E+GFT EI ++S+ G L+ S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262
Query: 399 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 436
+ ++ F D+D +LV K P YS LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 206 EKIKLITRRFPAFSYYSLEGK--IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENL 263
E IKLI +FP S+++++ + K V+F +LG+ I +L + + +N
Sbjct: 128 ELIKLI-EQFPE-SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNK 185
Query: 264 IPTMTFLE---NLG---VDKTQWA-KVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIG 316
E N+G + W K++ + P +L S +K+T++FL E G ++ I
Sbjct: 186 QMVRILQESYLNVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEIL 245
Query: 317 KVLTR--------CPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLK 368
++L++ CP SI+ + + F+ D+ L+ +CP L S+ L+
Sbjct: 246 QLLSKLKGFLFQLCPR----SIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPV-LE 300
Query: 369 PVTEFFLERGFTVEEI 384
+ L G ++ +I
Sbjct: 301 ERMQGLLREGISIAQI 316
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 230 VVEFLLDLGIPKAQIPTILGKRP-----QLCGISLSENLIPTMTFLENLGVDKTQWAKVI 284
V+ L D+G +A I ++ +P QL GI +SE L+ LG++ +
Sbjct: 95 VIRSLQDMGFAEAHIHSLFSIQPSVHPQQLLGI-VSELLL--------LGLNPEPVFNAL 145
Query: 285 QRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY---SIEEKLRPTAEYF 341
++ P +L S ++K+ +L ++GL + +VL+ CP + + I+ ++ E
Sbjct: 146 KKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMHQRDIDRVVKVLREKC 205
Query: 342 RSLGVDVSVLLQRCPQSL 359
++ +L RCP L
Sbjct: 206 LFTAQHITDVLHRCPTVL 223
>sp|Q7VPK9|COAA_HAEDU Pantothenate kinase OS=Haemophilus ducreyi (strain 35000HP / ATCC
700724) GN=coaA PE=3 SV=1
Length = 316
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 256 GISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESI 315
G+ ++ + P +TF D+ QWAK+ + P LT Q +K + F E+ L E +
Sbjct: 2 GLQTTKKITPFLTF------DRQQWAKLRKSVPLKLT--EQDLKPLLSFNEELSL--EEV 51
Query: 316 GKVLTRCPNIISYSIEEKLRPTAEYFRSLGV 346
+ +I+Y IEE ++ R LGV
Sbjct: 52 STIYLPLARLINYYIEENIKRQTVLHRFLGV 82
>sp|Q2JXD0|AROC_SYNJA Chorismate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroC
PE=3 SV=1
Length = 378
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 281 AKVIQRFPA---VLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPN-IISYSIEEKLRP 336
AK I R A +L Y Q+V+ + ++AE + + RCP+ + ++ EK+
Sbjct: 142 AKKILRLAAGVEILAYV-QRVQDVEAQVDPSSVTAEQVEANIVRCPDPAAAAAMIEKIEA 200
Query: 337 TAEYFRSLGVDVSVLLQRCPQSLGCSI----EANL-KPVTEFFLERGFTVEEIGTMISRF 391
A SLG V + + P+ LGC + EA+L K V +GF EIG S F
Sbjct: 201 AAREGDSLGGVVECVARNVPRGLGCPVFDKLEADLAKAVMSLPASKGF---EIG---SGF 254
Query: 392 GALYTFSLTENLIPKWEFFLT 412
Y N EF++T
Sbjct: 255 AGTYLTGKQHND----EFYMT 271
>sp|B0UV22|COAA_HAES2 Pantothenate kinase OS=Haemophilus somnus (strain 2336) GN=coaA
PE=3 SV=1
Length = 317
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 40/186 (21%)
Query: 253 QLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSA 312
+L I LS++L P +TF ++ QWA++ + P LT Q +K + F E LS
Sbjct: 3 ELNTIKLSDHLTPFLTF------NRQQWAELRKSVPLKLT--EQDLKPLLGFNEE--LSL 52
Query: 313 ESIGKVLTRCPNIISYSIEEKLR-------------PTAEYFRSLGVDVSVLLQRCPQSL 359
E + + +I+Y IEE LR P Y S+ VSV
Sbjct: 53 EEVSTIYLPLARLINYYIEENLRRQTVLKRFLSGHNPKVPYIISIAGSVSV--------- 103
Query: 360 GCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTE--NLIPKWEFFLTMDYDK 417
G S A + L + V +I+ G LY + + NL+ K F + YD
Sbjct: 104 GKSTSARILQS----LLANWPVARKVDLITTDGFLYPLEILQKKNLLQKKGF--PISYDT 157
Query: 418 SELVKF 423
L++F
Sbjct: 158 QRLIRF 163
>sp|Q0I1U8|COAA_HAES1 Pantothenate kinase OS=Haemophilus somnus (strain 129Pt) GN=coaA
PE=3 SV=1
Length = 317
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 253 QLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSA 312
+L I LS++L P +TF ++ QWA++ + P LT Q +K + F E LS
Sbjct: 3 ELNTIKLSDHLTPFLTF------NRQQWAELRKSVPLKLT--EQDLKPLLGFNEE--LSL 52
Query: 313 ESIGKVLTRCPNIISYSIEEKLR 335
E + + +I+Y IEE LR
Sbjct: 53 EEVSTIYLPLARLINYYIEENLR 75
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 234 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
L D+G +A I ++L +P + + L+ ++ L LG++ +++ P +L
Sbjct: 99 LQDMGFAEAHIDSLLNIQPSV----HPQQLLDIISELLLLGLNPEPVFMALKKNPQLLKL 154
Query: 294 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY---SIEEKLRPTAEYFRSLGVDVSV 350
S ++K+ +L ++GL + +VL+ CP + + I+ ++ E ++
Sbjct: 155 SATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTMRQQDIDNIVKVLKEKCLFTVQHITD 214
Query: 351 LLQRCPQSL 359
+L RCP L
Sbjct: 215 ILHRCPAVL 223
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 226 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQ 285
+++ V+ LLD+G A I +L R G SL + L+ ++ LG++ V++
Sbjct: 91 ELERVMSSLLDMGFSNAHINELLSVRR---GASL-QQLLDIISEFILLGLNPEPVCVVLK 146
Query: 286 RFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY---SIEEKLRPTAEYFR 342
+ P +L ++++ +L ++GL + +VL CP I + I + +R E
Sbjct: 147 KSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCL 206
Query: 343 SLGVDVSVLLQRCPQSL 359
V+ +L CP L
Sbjct: 207 FTVQQVTKILHSCPSVL 223
>sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum
GN=hgsA PE=1 SV=2
Length = 482
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 97 IDHLVSRLHSVHKSRYLVGRELTTLEIRDAL--TPYLESLLEEYGNVLVDLVENFPNAPP 154
ID+ +R + +Y G+ + ++ AL +PY + + + +G +L + N PN
Sbjct: 219 IDNCYNRYAKAFEKKY--GKSFSLDQVDFALFHSPYNKLVQKSFGRMLYNDFLNNPNDSR 276
Query: 155 PAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELG------------ 202
A +A V P + DS KA+S +++ D + + P L +LG
Sbjct: 277 YASLEAYKNVKPEDTYFDSVLEKALSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLL 336
Query: 203 --MDLEKIKLITRRFPAFSYYS 222
+D + L+ +R FSY S
Sbjct: 337 SLLDEKSNDLVGKRVLTFSYGS 358
>sp|Q8Z289|GUN_SALTI Endoglucanase OS=Salmonella typhi GN=bcsZ PE=3 SV=1
Length = 369
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 20/158 (12%)
Query: 150 PNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIK 209
P+ PP + + P STL L+ + S S D + Y + G L+ K
Sbjct: 181 PSYLPPQLAQYFSRFGAPWSTLRETNLRLLLETSPKGFSPDW---VRYESKQGWQLKAEK 237
Query: 210 LITRRFPAFSYYSLEG--------------KIKPVVEFLLDLGIPKAQIPTILGKRPQLC 255
+ + A Y G + KP+ + G+P ++ + G
Sbjct: 238 TLISSYDAIRVYLWTGMMHDGDPQKARLLARFKPMATLTMKNGVPPEKVDVVSGNAQGTG 297
Query: 256 GISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 293
+ S L+P FL+N G Q +V FP Y
Sbjct: 298 PVGFSAALLP---FLQNRGAQAVQRQRVADHFPGSDAY 332
>sp|O15055|PER2_HUMAN Period circadian protein homolog 2 OS=Homo sapiens GN=PER2 PE=1
SV=2
Length = 1255
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 14 LWSLCGRAFSFTRSQPALPEKLFFCRAKFGDSGVNG--SSSLRVVPSTLLAAEKEEAKAV 71
LWS+C A SFT Q + EK FFCR S N R+ P + +++ A++
Sbjct: 250 LWSMCSGADSFT--QECMEEKSFFCRVSVRKSHENEIRYHPFRMTPYLVKVRDQQGAESQ 307
Query: 72 LTLFLKKQGLSKGVAARTI 90
L L + + G A I
Sbjct: 308 LCCLLLAERVHSGYEAPRI 326
>sp|B5YKE5|QUEA_THEYD S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=queA PE=3 SV=1
Length = 345
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 51 SSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKS----DLFIDHLVSRLHS 106
++ +V+P+ L+A + K + L +K+ S+ V + K ++FID ++ L +
Sbjct: 59 NNTKVIPARLIAEKPSGGKIEILLIKEKKCSSQNVVWEVMTKGSYEGEVFIDEFIAELRN 118
Query: 107 VHKSRYLVGRELTTLEIRDALT 128
RY+V + +T+ ++R+ +
Sbjct: 119 NCDGRYIVFKNMTSPKVRNLIN 140
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 168 VSTLDSKKLKAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGK 226
+ ++ S+ +AI+R E L DL +I+ DLE + ++ R +F +
Sbjct: 98 IGSIISRYPRAITRTPESLSKRWDLWREIM-----ASDLEIVNILERSPESFFRSNNNLN 152
Query: 227 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA 281
++ ++FL +G+ + +L P+ SL+ N + FL+ G+ + T +
Sbjct: 153 LENNIKFLCSVGLTHKCLCRLLTSAPRTFSNSLNLNK-QMVEFLQETGISLGHNNPTDFV 211
Query: 282 -KVIQRFPAVLTYSRQKVKQTVDFL 305
K+I + P++L S ++VK ++FL
Sbjct: 212 RKIISKNPSILIQSTKRVKTNIEFL 236
>sp|Q9HJM1|SYD_THEAC Aspartate--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=aspS PE=3 SV=1
Length = 428
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 307 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQ-SLGCSIEA 365
++ +S + N I IE +R AE F SLG+ +SV P+ + I+
Sbjct: 227 DIEMSFADHNDAMAMLENAIRSGIENAVRENAEDFESLGISISVPETPFPRITYEQCIDL 286
Query: 366 NLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEF----FLTMDYDKSELV 421
K +F F+ +++ T+ SRF Y I +W F TM KSE
Sbjct: 287 LQKDGIDFTFGDDFSPDQLRTIGSRFSGFY-------FITEWPSSVRPFYTM--PKSEDP 337
Query: 422 KFPQYFGYSLEERIKPRYARVKVHGVKLLLNQ 453
+ F E I+ +VH K+L+ +
Sbjct: 338 RLTNSFDLQYRE-IEVTSGAQRVHDPKMLIQR 368
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 198 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 257
L+ +G+D I + +R P ++ + + + FLL G K I +I+ + P+ I
Sbjct: 79 LLTMGVD---IDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPR--AI 132
Query: 258 SLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT--VDFLYEMGLSAES 314
+ + ENL + + +++R P S + + FLY +GL+ +
Sbjct: 133 TRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKC 192
Query: 315 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 348
+ ++LT P S S++ + E+ ++ G+ +
Sbjct: 193 LCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 225
>sp|Q5R9U8|MTERF_PONAB Transcription termination factor, mitochondrial OS=Pongo abelii
GN=MTERF PE=2 SV=1
Length = 398
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 198 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 257
L+ +G+D I + +R P ++ + + + FLL G K I +I+ + P+ I
Sbjct: 79 LLTMGVD---IDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPR--AI 132
Query: 258 SLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT--VDFLYEMGLSAES 314
+ + ENL + + +++R P S + + FLY +GL+ +
Sbjct: 133 TRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKC 192
Query: 315 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 348
+ ++LT P S S++ + E+ ++ G+ +
Sbjct: 193 LCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 225
>sp|Q65QG5|COAA_MANSM Pantothenate kinase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=coaA PE=3 SV=1
Length = 317
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 258 SLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGK 317
S+SE P +TF + QWA++ + P LT Q +K + F E+ L E +
Sbjct: 8 SVSEKFSPFLTFT------RKQWAELRKSVPLKLT--EQDLKPLLGFNEELSL--EEVST 57
Query: 318 VLTRCPNIISYSIEEKLRPTAEYFRSLG 345
+ +I+Y IEE LR R LG
Sbjct: 58 IYLPLARLINYYIEENLRRQTVMNRFLG 85
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 168 VSTLDSKKLKAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGK 226
+ ++ S+ +AI+R E L DL +I+ DLE + ++ R +F +
Sbjct: 103 IGSIISRYPRAITRTPESLSKRWDLWRKIM-----ASDLEIVNILERSPESFFRSNNNLN 157
Query: 227 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA 281
++ ++FL +G+ + +L P+ SL+ N + FL+ G+ D +
Sbjct: 158 LENNIKFLCSVGLTHKCLCRLLTNAPRTFSNSLNLNK-QMVEFLQETGMSLGHNDPRDFV 216
Query: 282 -KVIQRFPAVLTYSRQKVKQTVDFL 305
K+I + P++L S ++VK ++FL
Sbjct: 217 RKIISKNPSILIQSTKRVKTNIEFL 241
>sp|P52227|THIO_CHLCV Thioredoxin OS=Chlamydophila caviae (strain GPIC) GN=trxA PE=3 SV=1
Length = 102
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 127 LTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELD 186
LTP LESL E +VL+ V N + P PA+Q V+ + + D K++ + + + D
Sbjct: 34 LTPVLESLEAEVSSVLIGKV-NIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKD 92
Query: 187 S 187
S
Sbjct: 93 S 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,858,773
Number of Sequences: 539616
Number of extensions: 7394768
Number of successful extensions: 22435
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 22385
Number of HSP's gapped (non-prelim): 51
length of query: 492
length of database: 191,569,459
effective HSP length: 122
effective length of query: 370
effective length of database: 125,736,307
effective search space: 46522433590
effective search space used: 46522433590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)