Query 011168
Match_columns 492
No_of_seqs 292 out of 1347
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 22:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011168.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011168hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tj1a1 a.176.1.1 (A:89-261) N 58.2 4.6 0.00033 34.1 4.4 68 61-142 3-75 (173)
2 d2a6ca1 a.35.1.13 (A:1-69) HTH 57.2 11 0.0008 26.2 5.8 55 69-137 8-62 (69)
3 d1oqya1 a.5.2.1 (A:160-200) DN 49.5 4.5 0.00033 25.7 2.2 26 297-322 3-28 (41)
4 d1qpza1 a.35.1.5 (A:2-58) Puri 43.1 18 0.0013 24.5 4.7 47 270-319 7-53 (57)
5 d2hsga1 a.35.1.5 (A:2-58) Gluc 39.8 21 0.0015 24.1 4.6 45 270-317 8-52 (57)
6 d1uxda_ a.35.1.5 (A:) Fructose 39.1 12 0.00086 25.5 3.3 46 270-315 7-52 (59)
7 d1oqya1 a.5.2.1 (A:160-200) DN 38.1 15 0.0011 23.1 3.4 26 190-215 3-28 (41)
8 d1efaa1 a.35.1.5 (A:2-60) Lac 36.4 23 0.0017 24.0 4.5 47 270-319 9-55 (59)
9 d1vg5a_ a.5.2.1 (A:) Rhomboid 31.8 14 0.001 26.3 2.7 36 299-342 30-65 (73)
10 d1vz0a1 a.4.14.1 (A:116-208) P 31.7 57 0.0041 23.9 6.5 37 64-102 5-41 (93)
11 d1f5ta2 a.76.1.1 (A:1065-1121) 26.5 13 0.00098 24.9 1.7 35 64-102 10-45 (57)
12 d1pbya1 a.3.1.7 (A:1-85) Quino 26.3 19 0.0014 26.4 2.7 22 66-87 54-75 (85)
13 d1wiva_ a.5.2.1 (A:) Ubiquitin 26.0 31 0.0022 24.4 3.8 36 299-342 30-65 (73)
14 d1y9qa1 a.35.1.8 (A:4-82) Prob 25.3 18 0.0013 25.5 2.4 59 298-356 9-72 (79)
15 d2isya2 a.76.1.1 (A:65-140) Ir 24.8 23 0.0017 25.2 2.9 35 64-102 10-45 (76)
16 d1vg5a_ a.5.2.1 (A:) Rhomboid 24.8 71 0.0052 22.3 5.7 39 192-238 30-68 (73)
17 d1wgna_ a.5.2.1 (A:) Ubiquitin 24.5 18 0.0013 24.9 2.1 37 299-343 20-56 (63)
18 d2ev0a2 a.76.1.1 (A:63-136) Ma 24.1 45 0.0033 23.3 4.4 35 64-102 10-44 (74)
19 d1go3f_ a.60.8.2 (F:) RNA poly 24.0 28 0.0021 26.5 3.5 36 66-102 50-85 (107)
20 d1wjia_ a.5.2.1 (A:) Tudor dom 23.3 84 0.0061 21.1 5.7 38 192-237 10-47 (63)
21 d1k6ya1 a.4.10.1 (A:1-46) N-te 23.3 35 0.0025 21.9 3.2 23 72-94 19-41 (46)
22 d2g3qa1 a.5.2.1 (A:1339-1381) 23.0 23 0.0017 22.3 2.2 22 371-392 8-29 (43)
23 d1jmxa1 a.3.1.7 (A:2-85) Quino 21.5 26 0.0019 25.5 2.6 22 66-87 54-75 (84)
24 d1wgna_ a.5.2.1 (A:) Ubiquitin 21.4 50 0.0036 22.5 4.0 39 192-238 20-58 (63)
25 d1wiva_ a.5.2.1 (A:) Ubiquitin 21.3 76 0.0055 22.1 5.2 38 192-237 30-67 (73)
No 1
>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}
Probab=58.18 E-value=4.6 Score=34.09 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHHHH-----HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhh
Q 011168 61 LAAEKEEA-----KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLL 135 (492)
Q Consensus 61 ~~~~~~~a-----~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lG 135 (492)
+++++.+| ..+|.+++....+++++..++...+-..+..++. .- +....+.-|-+||..+|
T Consensus 3 ~R~ai~~~y~~dE~~~v~~Ll~~~~~~~~~~~~i~~~A~~lV~~vR~----~~----------~~~~~~~~ld~fL~EY~ 68 (173)
T d1tj1a1 3 SRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRN----QK----------NASGRAGMVQGLLQEFS 68 (173)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHT----TT----------STTTTTTC---------
T ss_pred hHHHHHHHHcCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHh----cc----------cccccccHHHHHHHHcC
Confidence 34455554 6789999999999999999998884444444443 10 00123445678999999
Q ss_pred hhhhhhH
Q 011168 136 EEYGNVL 142 (492)
Q Consensus 136 ls~~~~i 142 (492)
||..+.|
T Consensus 69 Lss~EGi 75 (173)
T d1tj1a1 69 LSSQEGV 75 (173)
T ss_dssp -----CH
T ss_pred CCcHHHH
Confidence 9987765
No 2
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=57.20 E-value=11 Score=26.16 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCChHHHhhhhccChHHHHHHHHHhHhhhhhcccccccccchHHhHhHHHHHHHhhhh
Q 011168 69 KAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEE 137 (492)
Q Consensus 69 ~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s~~~~~~~~~~~~~~~l~~~~~~davlafLe~lGls 137 (492)
-..+..+....|+|..|+++...-++.+++++.+. + .+.| .-+.+..+++.||.+
T Consensus 8 ~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g------------~-~~~~-s~~~L~~ia~~Lg~~ 62 (69)
T d2a6ca1 8 LIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRG------------K-IDLF-SLESLIDMITSIGLK 62 (69)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTT------------C-GGGC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcCHhHHHHHHcc------------c-ccch-hHHHHHHHHHHhCCC
Confidence 35567777899999999999999999999999881 1 1112 234667788888876
No 3
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.52 E-value=4.5 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHcCCChHhHhhhhhcC
Q 011168 297 KVKQTVDFLYEMGLSAESIGKVLTRC 322 (492)
Q Consensus 297 kl~~~v~fL~~lG~s~~ei~~~v~~~ 322 (492)
.....|+-|.++||+++++.+++..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35566777777888888877776653
No 4
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.07 E-value=18 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHhhhh
Q 011168 270 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVL 319 (492)
Q Consensus 270 L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~v 319 (492)
.+..||+...+.++|...|.+ +++.-+...+..+++|+.+....+-+
T Consensus 7 A~~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 445677777777777765543 44445555566667777766555433
No 5
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=39.79 E-value=21 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHhh
Q 011168 270 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGK 317 (492)
Q Consensus 270 L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~ 317 (492)
.+..||+...+.++|...|.+ +++.-+...+..+++|+.+.....
T Consensus 8 A~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~~A~ 52 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNAVAR 52 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCHHHH
Confidence 344566666666666555532 444444444555566665554433
No 6
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.07 E-value=12 Score=25.52 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred HHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhH
Q 011168 270 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESI 315 (492)
Q Consensus 270 L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei 315 (492)
.+..||+...+.++|...|.-...+++.-+...+..+++|+.+...
T Consensus 7 A~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~ 52 (59)
T d1uxda_ 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (59)
T ss_dssp HHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCSC
T ss_pred HHHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCHH
Confidence 3455677777766666555433344555555555556666655443
No 7
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.09 E-value=15 Score=23.06 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhC
Q 011168 190 DLRPQILYLIELGMDLEKIKLITRRF 215 (492)
Q Consensus 190 ~l~~~l~~L~~lG~s~~~i~~ll~~~ 215 (492)
+....++-|.+.||+.++..+.+...
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45667888888888888888887764
No 8
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.44 E-value=23 Score=24.02 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=26.0
Q ss_pred HHHhCCChhhHHHHHHhCCccccccchhhhhHHHHHHHcCCChHhHhhhh
Q 011168 270 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVL 319 (492)
Q Consensus 270 L~~lGv~~~~i~kll~~~P~iL~~s~ekl~~~v~fL~~lG~s~~ei~~~v 319 (492)
.+..||+...+.++|...+.+ +++.-+...+..+++|+.+..+...+
T Consensus 9 A~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L 55 (59)
T d1efaa1 9 AEYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRVAQQL 55 (59)
T ss_dssp HHTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 344566666666666554442 44444555555566666665554443
No 9
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.82 E-value=14 Score=26.32 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=23.8
Q ss_pred hhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH
Q 011168 299 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 342 (492)
Q Consensus 299 ~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~ 342 (492)
+..|+-|.++||+++....++..+ ..+++..++||.
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll 65 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 445667777888877777666543 236667777765
No 10
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=31.74 E-value=57 Score=23.90 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHH
Q 011168 64 EKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 102 (492)
Q Consensus 64 ~~~~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s 102 (492)
+.+||+ +...++ .+|+|.++.++.-.+|+.++++...
T Consensus 5 piEeA~-a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~Lr 41 (93)
T d1vz0a1 5 PVEEAR-GYQALL-EMGLTQEEVARRVGKARSTVANALR 41 (93)
T ss_dssp HHHHHH-HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH-HHHHHH-HcCCCHHHHHHHHccchHHHHHHHH
Confidence 467775 556666 6999999999988888888777666
No 11
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=26.52 E-value=13 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHH-HcCCChHHHhhhhccChHHHHHHHH
Q 011168 64 EKEEAKAVLTLFLK-KQGLSKGVAARTINKSDLFIDHLVS 102 (492)
Q Consensus 64 ~~~~a~~~~~~~l~-t~GLt~~~A~~~s~~s~~~l~~l~s 102 (492)
.+-..-..+..||. -.|++..+|..-+.. +.|-.|
T Consensus 10 ~i~rrHrlle~fL~~~lgv~~~~a~~~A~~----iEH~ls 45 (57)
T d1f5ta2 10 AVMRKHRLAERLLTDIIGLDINKVHDEADR----WEHVMS 45 (57)
T ss_dssp HHHHHHHHHHHHHHTTSCCCGGGHHHHHHH----HTTTCC
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHH----HHccCC
Confidence 33344556778886 679999999999998 788777
No 12
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=26.34 E-value=19 Score=26.35 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHh
Q 011168 66 EEAKAVLTLFLKKQGLSKGVAA 87 (492)
Q Consensus 66 ~~a~~~~~~~l~t~GLt~~~A~ 87 (492)
+|.++.++||..+.|+.++.+.
T Consensus 54 ~e~~~Iv~YLa~~yG~~p~e~~ 75 (85)
T d1pbya1 54 EERAAIVRHLSDTRGLSLAETE 75 (85)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGT
T ss_pred HHHHHHHHHHHHHcCCCccccc
Confidence 4778888888889999999875
No 13
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.03 E-value=31 Score=24.36 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=23.1
Q ss_pred hhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHH
Q 011168 299 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 342 (492)
Q Consensus 299 ~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~ 342 (492)
...|+-|.++||+++...+++..+ ..+++..++||-
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Ll 65 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 345666777788777777776654 235666666664
No 14
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=25.28 E-value=18 Score=25.50 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=27.0
Q ss_pred hhhHHHHHH-HcCCChHhHhhhhhcCcceeeccchhhhhhhHHHH----HhhCCCcchhhhccc
Q 011168 298 VKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYF----RSLGVDVSVLLQRCP 356 (492)
Q Consensus 298 l~~~v~fL~-~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL----~~lGl~~~~il~r~P 356 (492)
+..++..++ ..|++.++++..+--.+.-+..-...+-.+.++.+ .-+|+++.+++...|
T Consensus 9 ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~ 72 (79)
T d1y9qa1 9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP 72 (79)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcchhHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhCCCc
Confidence 444455554 45666666665554333333211011112233333 236777766665433
No 15
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.80 E-value=23 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHH-HcCCChHHHhhhhccChHHHHHHHH
Q 011168 64 EKEEAKAVLTLFLK-KQGLSKGVAARTINKSDLFIDHLVS 102 (492)
Q Consensus 64 ~~~~a~~~~~~~l~-t~GLt~~~A~~~s~~s~~~l~~l~s 102 (492)
.+-+.-..+..||. ..|++.++|..-|.+ +.|..|
T Consensus 10 ~i~rrHrlle~fL~~~lgv~~~~a~~~A~~----iEH~is 45 (76)
T d2isya2 10 AVMRKHRLAERLLVDVIGLPWEEVHAEACR----WEHVMS 45 (76)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH----HhccCC
Confidence 33444556778885 799999999999999 888887
No 16
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.80 E-value=71 Score=22.27 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCC
Q 011168 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 238 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~G 238 (492)
...|+-|.++||+.++..+.+... .++++.-++||-+..
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~~ 68 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhCC
Confidence 677999999999999999988764 257888899987653
No 17
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.47 E-value=18 Score=24.93 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=23.9
Q ss_pred hhHHHHHHHcCCChHhHhhhhhcCcceeeccchhhhhhhHHHHHh
Q 011168 299 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 343 (492)
Q Consensus 299 ~~~v~fL~~lG~s~~ei~~~v~~~P~iL~~s~e~~L~~~v~fL~~ 343 (492)
...|+-|.++||++++..+++..+ ..+++..++||.+
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 345677777888887777766643 1356667777653
No 18
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=24.08 E-value=45 Score=23.34 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHH
Q 011168 64 EKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 102 (492)
Q Consensus 64 ~~~~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s 102 (492)
.+-..-..+..||..-|++..+|...|.+ +.|..|
T Consensus 10 ~i~rrHrlle~fL~~lg~~~~~a~~~A~~----iEH~is 44 (74)
T d2ev0a2 10 RLVYRHELLEQFLRIIGVDEEKIYNDVEG----IEHHLS 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHH----HGGGCC
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHH----HHhcCC
Confidence 33444556778889999999999999998 888777
No 19
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=24.00 E-value=28 Score=26.51 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHhhhhccChHHHHHHHH
Q 011168 66 EEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 102 (492)
Q Consensus 66 ~~a~~~~~~~l~t~GLt~~~A~~~s~~s~~~l~~l~s 102 (492)
+.|++.+..++. +|+++..|++++.-+|...+.+++
T Consensus 50 e~~~~l~~~L~~-~~~~~~~aakIanL~P~~~dElra 85 (107)
T d1go3f_ 50 EEAKKLVEELIS-LGIDEKTAVKIADILPEDLDDLRA 85 (107)
T ss_dssp HHHHHHHHHHHH-TTCCHHHHHHHHHHCCCSHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHhCCCCHHHHHH
Confidence 567777777774 799999999999988888788777
No 20
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.33 E-value=84 Score=21.11 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhC
Q 011168 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 237 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~ 237 (492)
...|+.|.+.||+..+..+.+... .++++.-++||.+-
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456888999999999999988764 24678888888764
No 21
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=23.28 E-value=35 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHHcCCChHHHhhhhccCh
Q 011168 72 LTLFLKKQGLSKGVAARTINKSD 94 (492)
Q Consensus 72 ~~~~l~t~GLt~~~A~~~s~~s~ 94 (492)
..+|-..+|||+.+|..|-+.+|
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~ 41 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCD 41 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 34566799999999999977765
No 22
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=23.00 E-value=23 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhcc
Q 011168 371 TEFFLERGFTVEEIGTMISRFG 392 (492)
Q Consensus 371 ~~fL~~~Gls~~ev~~mi~~~P 392 (492)
++-|.++||++++..+.+.++-
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~ 29 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHcC
Confidence 5667789999999988887764
No 23
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=21.47 E-value=26 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHh
Q 011168 66 EEAKAVLTLFLKKQGLSKGVAA 87 (492)
Q Consensus 66 ~~a~~~~~~~l~t~GLt~~~A~ 87 (492)
++..+.++||..+.|++|+.++
T Consensus 54 ~e~~~Iv~YLa~~yG~~p~e~~ 75 (84)
T d1jmxa1 54 DDRRTLVKYLADKQGLAPSETD 75 (84)
T ss_dssp HHHHHHHHHHHHHTCCCGGGST
T ss_pred HHHHHHHHHHHHHcCCCccccc
Confidence 3667777888889999998764
No 24
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.45 E-value=50 Score=22.49 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhCC
Q 011168 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 238 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~G 238 (492)
...|+.|.+.||+.++..+.+... .++++.-++||-+..
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls~~ 58 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 456899999999999999988764 246888889887643
No 25
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.30 E-value=76 Score=22.11 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhCCceeecCcCCCHHHHHHHHHhC
Q 011168 192 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 237 (492)
Q Consensus 192 ~~~l~~L~~lG~s~~~i~~ll~~~P~lL~~~le~~lkp~v~fL~~~ 237 (492)
...++.|.+.||+.++..+.+... .+++..-++||-+-
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 566889999999999999998775 24688888888764
Done!