BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011170
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 184/455 (40%), Positives = 254/455 (55%), Gaps = 32/455 (7%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDS-EWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMIL 101
QL+W RE+I F HFG+NTF + G G + IFNP LD QW+ T AG+ IL
Sbjct: 14 QLEWYNREMIAFFHFGINTFEEYVNEGDGKASTAIFNPTALDCRQWMQTLKAAGIPAAIL 73
Query: 102 TAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-- 159
TAKH DGFCLWPSK+T++SV ++ WK+G+GDVV+E V+A + G+ G+YL P DRH+
Sbjct: 74 TAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYLGPHDRHEHL 133
Query: 160 -PRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQS 218
P Y + +Y EYY QL EL++ YG + E W+DGA Y W+ +V+E Q
Sbjct: 134 SPLYTTE-RYKEYYAHQLGELMSDYGKIWETWWDGAGADELTTPVY--RHWYKIVREKQP 190
Query: 219 SINIF----SDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDW 274
IF S DVRW+GNE G AG CW+T + ++ L+ G G +
Sbjct: 191 DCVIFGTKNSYPFADVRWMGNEAGEAGDPCWATTDSVAIR-DEAQYYKGLNEGMLDGDAY 249
Query: 275 LPAECDVSIRKGWFWHKSETP--KKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDV 332
+PAE DVSIR WF+H E K + EL +IY SVGRN V+LLN PP+ GLI TD
Sbjct: 250 IPAETDVSIRPSWFYHAEEDSRVKSVRELWDIYCTSVGRNSVLLLNFPPDRRGLIHSTDS 309
Query: 333 QRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGI 392
ID FS NL VKA++ R K + PE +LD++ TY+A +DG+
Sbjct: 310 LHAALLKQGIDETFSTNLLRGAKVKATNVRGAK---YSPEKMLDNEK-NTYFAGKDGEVK 365
Query: 393 SDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKR--HEIFVDGK---LVAEGT---TVGH 444
+D I + + F+ + I+E I LG R + E VDGK + E T +GH
Sbjct: 366 ADI----IFTLPKTIEFDCLMIEEVIELGHRTTKWSVEYTVDGKNWITIPEATDKQAIGH 421
Query: 445 KKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLH 479
K + RL + VR++I++ +A P I + G++
Sbjct: 422 KWIVRL--APVKAKQVRLRIQDGKACPAIHTFGVY 454
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 254/464 (54%), Gaps = 47/464 (10%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILT 102
QL WQ+ E+ FLHFG+NT TD EWG G+E+P +FNP +D +QW++ G++ +ILT
Sbjct: 23 QLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPALFNPRNVDVDQWMDALVAGGMAGVILT 82
Query: 103 AKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162
KHHDGFCLWPS+ T H+VA SPW+ G+GD+V+E+ +A+ G+ G+YLSPWDR + Y
Sbjct: 83 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 142
Query: 163 GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDW---FAMVKELQSS 219
G Y+++Y+ QL ELLT+YG + +W DGA G + Y+ DW + +++ LQ
Sbjct: 143 GKGKAYDDFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYY-DWDRYYNVIRSLQPD 201
Query: 220 INIFSDAGPDVRWVGNEKGFAGSTCWSTINR----------TSLSIGNGSIVDYLSTGD- 268
+ S GPDVRW GNE G WS + R S + S +S+ D
Sbjct: 202 A-VISVCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTMEKSQQEDDASFATTVSSQDD 260
Query: 269 -----------AKGTDWLPAECDVSIRKGWFWHKSETPKKLS--ELLEIYYNSVGRNCVM 315
W PAE D SIR GWF+H+SE K +S +L +++ ++VG N +
Sbjct: 261 DLGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSL 320
Query: 316 LLNVPPNTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVL 375
LLN+PP+ GL++E DVQ L+ G + + C + SS A L
Sbjct: 321 LLNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALASVRCEARTSSASAAAAH-------L 373
Query: 376 DDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHEI---FVD 432
D + T+W P D D + + + + N I I+EAI GQRI+ + D
Sbjct: 374 VDGNRDTFWRP-DADDAAPAITLTL---PQPTTINAIVIEEAIEHGQRIEHLRVTGALPD 429
Query: 433 G--KLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLIS 474
G +++ + TVG++++ R ++ ++ V + + SR P+IS
Sbjct: 430 GTERVLGQAGTVGYRRILRFDD--VEVSSVTLHVDGSRLAPMIS 471
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 252/464 (54%), Gaps = 47/464 (10%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILT 102
QL WQ+ E+ FLHFG+NT TD EWG G+E+P +FNP +D +QW++ G++ +ILT
Sbjct: 23 QLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPALFNPRNVDVDQWMDALVAGGMAGVILT 82
Query: 103 AKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162
KHHDGFCLWPS+ T H+VA SPW+ G+GD+V+E+ +A+ G+ G+YLSPWDR + Y
Sbjct: 83 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 142
Query: 163 GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDW---FAMVKELQSS 219
G Y+++Y+ QL ELLT+YG + +W GA G + Y+ DW + +++ LQ
Sbjct: 143 GKGKAYDDFYVGQLTELLTQYGPIFSVWLAGANGEGKNGKTQYY-DWDRYYNVIRSLQPD 201
Query: 220 INIFSDAGPDVRWVGNEKGFAGSTCWSTINR----------TSLSIGNGSIVDYLSTGD- 268
+ S GPDVRW GN G WS + R S + S +S+ D
Sbjct: 202 A-VISVCGPDVRWAGNAAGHVRDNEWSVVPRRLRSAELTMEKSQQEDDASFATTVSSQDD 260
Query: 269 -----------AKGTDWLPAECDVSIRKGWFWHKSETPKKLS--ELLEIYYNSVGRNCVM 315
W PAE D SIR GWF+H+SE K +S +L +++ ++VG N +
Sbjct: 261 DLGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSL 320
Query: 316 LLNVPPNTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVL 375
LLN+PP+ GL++E DVQ L+ G + + C + SS A L
Sbjct: 321 LLNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALASVRCEARTSSASAAAAH-------L 373
Query: 376 DDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHEI---FVD 432
D + T+W P D D + + + + N I I+EAI GQRI+ + D
Sbjct: 374 VDGNRDTFWRP-DADDAAPAITLTL---PQPTTINAIVIEEAIEHGQRIEHLRVTGALPD 429
Query: 433 G--KLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLIS 474
G +++ + TVG++++ R ++ ++ V + + SR P+IS
Sbjct: 430 GTERVLGQAGTVGYRRILRFDD--VEVSSVTLHVDGSRLAPMIS 471
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 288 bits (736), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 248/464 (53%), Gaps = 47/464 (10%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILT 102
QL WQ+ E FLHFG NT TD EWG G+E+P +FNP +D +QW + G + +ILT
Sbjct: 25 QLAWQRXEXYAFLHFGXNTXTDREWGLGHEDPALFNPRNVDVDQWXDALVAGGXAGVILT 84
Query: 103 AKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162
KHHDGFCLWPS+ T H+VA SPW+ G+GD+V+E+ +A+ G+ G+YLSPWDR + Y
Sbjct: 85 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 144
Query: 163 GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDW---FAMVKELQSS 219
G Y+++Y+ QL ELLT+YG + +W DGA G + Y+ DW + +++ LQ
Sbjct: 145 GKGKAYDDFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYY-DWDRYYNVIRSLQPD 203
Query: 220 INIFSDAGPDVRWVGNEKGFAGSTCWSTINR----------TSLSIGNGSIVDYLSTGD- 268
+ S GPDVRW GNE G WS + R S + S +S+ D
Sbjct: 204 A-VISVCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTXEKSQQEDDASFATTVSSQDD 262
Query: 269 -----------AKGTDWLPAECDVSIRKGWFWHKSETPKKLS--ELLEIYYNSVGRNCVM 315
W PAE D SIR GWF+H+SE K S +L +++ ++VG N +
Sbjct: 263 DLGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVXSADQLFDLWLSAVGGNSSL 322
Query: 316 LLNVPPNTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGGFGPENVL 375
LLN+PP+ GL++E DVQ L+ G + + C + SS A L
Sbjct: 323 LLNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALASVRCEARTSSASAAA-------AHL 375
Query: 376 DDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHEI---FVD 432
D + T+W P D D + + + + N I I+EAI GQRI+ + D
Sbjct: 376 VDGNRDTFWRP-DADDAAPAITLTL---PQPTTINAIVIEEAIEHGQRIEHLRVTGALPD 431
Query: 433 G--KLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLIS 474
G +++ + TVG++++ R ++ ++ V + + SR P IS
Sbjct: 432 GTERVLGQAGTVGYRRILRFDD--VEVSSVTLHVDGSRLAPXIS 473
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 208/469 (44%), Gaps = 86/469 (18%)
Query: 43 QLKWQQRELIMFLHFGVNTFTDSEWGTGN------ENPEIFNPLGLDANQWVNTAAEAGV 96
QLKW + E H+ ++ F +G GN E+ IFNP L+ +QWV A AG
Sbjct: 14 QLKWHEAEXGAVFHYDLHVFDGIRYGQGNNRINPIEDYNIFNPTELNTDQWVQAAKAAGC 73
Query: 97 SLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS-PW 155
+LTA H GF LW S + + W+ G+GD+V++ VN+ + G+ G+Y+ W
Sbjct: 74 KFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQPGIYIGIRW 133
Query: 156 D----------RHDPRYGHDLQ--YNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMS 203
+ + + + Q Y + EL TRYGD+ IWFDG G++ P
Sbjct: 134 NSLLGIHNFKAEGEGAFARNRQAWYKRLCEKXVTELCTRYGDLYXIWFDG--GADDPRAD 191
Query: 204 YYFTDWFAMVKELQSSINIFSDAG-PDVRWVGNEKGFAGSTCWSTI-------NRTSLSI 255
D +V + Q + + + D RW G+E G CWST R SI
Sbjct: 192 --GPDVEPIVNKYQPNCLFYHNIDRADFRWGGSETGTVEYPCWSTFPVPCSHHKRIESSI 249
Query: 256 GNGSIVDYLSTGDAKGTDWLPAECDVSIRKG-----WFWHKSETPK--KLSELLEIYYNS 308
++ L GD G W+PA D +R WFW + L+ L + Y S
Sbjct: 250 DQ---LELLKHGDKNGRYWVPAXADTPLRGANGRHEWFWEPDDENNIYPLNTLXDKYEKS 306
Query: 309 VGRNCVMLLNVPPNTTGLISETDVQRLREFGTAIDTIFSKNLAENCFVKASSQRAGKGGG 368
VGRN ++L + P+ TGLI D QRL+E G I+ FS +A + S Q+
Sbjct: 307 VGRNATLILGLTPDPTGLIPAGDAQRLKEXGDEINRRFSSPIA-----RISGQKKSLTLK 361
Query: 369 FGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHE 428
G E + N IQE I G+RI++++
Sbjct: 362 LGKEQSV----------------------------------NYCIIQENIKNGERIRQYQ 387
Query: 429 I--FVDGK--LVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLI 473
I V+GK V +G +VGHK++ + E ++ +R+ + ES A+P I
Sbjct: 388 IEAKVNGKWQTVCKGESVGHKRIEKFE--PVEATALRLTVSESIALPDI 434
>pdb|2XIB|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XII|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
pdb|2XII|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
Length = 453
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQE 136
+NP DA +W A E G + +T KHH+GFCLWPSK+T+++VA++P+K D++ E
Sbjct: 76 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 132
Query: 137 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLA----------QLQELLTRYGDV 186
LV A G+DV Y S D +P Y +D++ E +A QL+EL TRY V
Sbjct: 133 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 192
Query: 187 REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224
++ WFDG ++ ++ M+KEL + I S
Sbjct: 193 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINS 230
>pdb|2WVT|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVT|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVU|A Chain A, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|B Chain B, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|C Chain C, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|D Chain D, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
Length = 443
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQE 136
+NP DA +W A E G + +T KHH+GFCLWPSK+T+++VA++P+K D++ E
Sbjct: 77 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 133
Query: 137 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLA----------QLQELLTRYGDV 186
LV A G+DV Y S D +P Y +D++ E +A QL+EL TRY V
Sbjct: 134 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 193
Query: 187 REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224
++ WFDG ++ ++ M+KEL + I S
Sbjct: 194 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINS 231
>pdb|2WVS|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
Length = 443
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQE 136
+NP DA +W A E G + +T KHH+GFCLWPSK+T+++VA++P+K D++ E
Sbjct: 77 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 133
Query: 137 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLA----------QLQELLTRYGDV 186
LV A G+DV Y S D +P Y +D++ E +A QL+EL TRY V
Sbjct: 134 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 193
Query: 187 REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224
++ WFDG ++ ++ M+KEL + I S
Sbjct: 194 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINS 231
>pdb|2WVV|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQE 136
+NP DA +W A E G + +T KHH+GFCLWPSK+T+++VA++P+K D++ E
Sbjct: 73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 129
Query: 137 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLA----------QLQELLTRYGDV 186
LV A G+DV Y S D +P Y +D++ E +A QL+EL TRY V
Sbjct: 130 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 189
Query: 187 REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224
++ WFDG ++ ++ M+KEL + I S
Sbjct: 190 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINS 227
>pdb|2WVV|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQE 136
+NP DA +W A E G + +T KHH+GFCLWPSK+T+++VA++P+K D++ E
Sbjct: 73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 129
Query: 137 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLA----------QLQELLTRYGDV 186
LV A G+DV Y S D +P Y +D++ E +A QL+EL TRY V
Sbjct: 130 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 189
Query: 187 REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224
++ WFDG ++ ++ M+KEL + I S
Sbjct: 190 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINS 227
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 59/308 (19%)
Query: 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTE-HSVAHSPWKHGRGDV 133
++F D +W + +AG +I T KHHDGFCLW +K+T+ +SV P + D+
Sbjct: 98 DLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP----KRDL 153
Query: 134 VQELVNAAKARGVDVGLYLS-----PWDRHDPRYGHDL--------QYNEYYLAQLQELL 180
V +L A + G+ G+Y S + RY DL +Y +Y Q+ EL+
Sbjct: 154 VGDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELV 213
Query: 181 TRY-GDVREIWFD-GAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKG 238
Y DV +W D G ++ Y F ++ K + S+N RW
Sbjct: 214 DLYLPDV--LWNDMGWPEKGKEDLKYLFAYYYN--KHPEGSVND--------RW------ 255
Query: 239 FAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKL 298
G W V+Y GD G W E I + ++++E P+ +
Sbjct: 256 --GVPHWDFKTAEYH-------VNY--PGDLPGYKW---EFTRGIGLSFGYNRNEGPEHM 301
Query: 299 SELLEIYY---NSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLA 351
+ ++ Y + V + +LLNV P G I + +RL G + D I+ ++
Sbjct: 302 LSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQXERLLGLGEWLRKYGDAIYGTSVW 361
Query: 352 ENCFVKAS 359
E C K
Sbjct: 362 ERCCAKTE 369
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 59/308 (19%)
Query: 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTE-HSVAHSPWKHGRGDV 133
++F D +W + +AG +I T KHHDGFCLW +K+T+ +SV P + D+
Sbjct: 98 DLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP----KRDL 153
Query: 134 VQELVNAAKARGVDVGLYLS-----PWDRHDPRYGHDL--------QYNEYYLAQLQELL 180
V +L A + G+ G+Y S + RY DL +Y +Y Q+ EL+
Sbjct: 154 VGDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELV 213
Query: 181 TRY-GDVREIWFD-GAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKG 238
Y DV +W D G ++ Y F ++ K + S+N RW
Sbjct: 214 DLYLPDV--LWNDMGWPEKGKEDLKYLFAYYYN--KHPEGSVND--------RW------ 255
Query: 239 FAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKL 298
G W V+Y GD G W E I + ++++E P+ +
Sbjct: 256 --GVPHWDFKTAEYH-------VNY--PGDLPGYKW---EFTRGIGLSFGYNRNEGPEHM 301
Query: 299 SELLEIYY---NSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLA 351
+ ++ Y + V + +LLNV P G I + +RL G + D I+ ++
Sbjct: 302 LSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRKYGDAIYGTSVW 361
Query: 352 ENCFVKAS 359
E C K
Sbjct: 362 ERCCAKTE 369
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 59/308 (19%)
Query: 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTE-HSVAHSPWKHGRGDV 133
++F D +W + +AG +I T KHHDGFCLW +K+T+ +SV P + D+
Sbjct: 98 DLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP----KRDL 153
Query: 134 VQELVNAAKARGVDVGLYLS-----PWDRHDPRYGHDL--------QYNEYYLAQLQELL 180
V +L A + G+ G+Y S + RY DL +Y +Y Q+ EL+
Sbjct: 154 VGDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELV 213
Query: 181 TRY-GDVREIWFD-GAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKG 238
Y DV +W D G ++ Y F ++ K + S+N RW
Sbjct: 214 DLYLPDV--LWNDMGWPEKGKEDLKYLFAYYYN--KHPEGSVND--------RW------ 255
Query: 239 FAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKL 298
G W V+Y GD G W E I + ++++E P+ +
Sbjct: 256 --GVPHWDFKTAEYH-------VNY--PGDLPGYKW---EFTRGIGLSFGYNRNEGPEHM 301
Query: 299 SELLEIYY---NSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLA 351
+ ++ Y + V + +LLNV P G I + +RL G + D I+ ++
Sbjct: 302 LSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRKYGDAIYGTSVW 361
Query: 352 ENCFVKAS 359
E C K
Sbjct: 362 ERCCAKTE 369
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 63/310 (20%)
Query: 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTE-HSVAHSPWKHGRGDV 133
++F D +W + +AG +I T KHHDGFCLW +K+T+ +SV P + D+
Sbjct: 98 DLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP----KRDL 153
Query: 134 VQELVNAAKARGVDVGLYLS-----PWDRHDPRYGHDL--------QYNEYYLAQLQELL 180
V +L A + G+ G+Y S + RY DL +Y +Y Q+ EL+
Sbjct: 154 VGDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELV 213
Query: 181 TRYGDVREIWFDGA----KGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNE 236
Y + ++ ++G KG ++ Y F ++ K + S+N RW
Sbjct: 214 DLY--LPDVLWNGMGWPEKGKE--DLKYLFAYYYN--KHPEGSVND--------RW---- 255
Query: 237 KGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPK 296
G W V+Y GD G W E I + ++++E P+
Sbjct: 256 ----GVPHWDFKTAEYH-------VNY--PGDLPGYKW---EFTRGIGLSFGYNRNEGPE 299
Query: 297 KLSELLEIYY---NSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKN 349
+ + ++ Y + V + +LLNV P G I + +RL G + D I+ +
Sbjct: 300 HMLSVEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRKYGDAIYGTS 359
Query: 350 LAENCFVKAS 359
+ E C K
Sbjct: 360 VWERCCAKTE 369
>pdb|3IT8|D Chain D, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|E Chain E, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|F Chain F, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|J Chain J, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|K Chain K, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|L Chain L, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
Length = 324
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 181 TRYGDV--REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221
TR+G+V R WF+ ++ + P Y F W++++KE IN
Sbjct: 39 TRHGNVNFRADWFNISRSPHTPGNDYNFNFWYSLMKETLEEIN 81
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 249 NRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKLSELLE 303
N+T LS G ++ L + G WL E DVS +GWF P ++LLE
Sbjct: 20 NKTLLSFAQGDVITLLIPEEKDG--WLYGEHDVSKARGWF------PSSYTKLLE 66
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVV 134
E+ GL A V+TA G + L A C PSK ++ ++ K G+G +
Sbjct: 134 EMAKAAGL-ATGNVSTAELQGATPAALVAHVTSRKCYGPSKTSQKCPGNALEKGGKGSIT 192
Query: 135 QELVNA 140
++L+NA
Sbjct: 193 EQLLNA 198
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 8/150 (5%)
Query: 173 LAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAM---VKELQSSINIFSDAGPD 229
L +E L + + + KG PN+ W+A+ V S +A D
Sbjct: 319 LKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKD 378
Query: 230 VRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVD---YLSTGDAKGTDWLPAECDVSIRKG 286
+ + FA + I R + N +V+ YL A+ D L A C +S +
Sbjct: 379 AQ-TNSAMAFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRD 437
Query: 287 WFWHKSETPKKLSELLEIYYNSVGRNCVML 316
WH T ++ +E Y+ + R C ++
Sbjct: 438 TLWHLFNTLQRRPGWVE-YFIAALRGCELV 466
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 214 KELQSSINIFSDAGPDVRWVGNEKGF-----------AGSTCWSTINRTSLS 254
K L + N++ D P+V W+ NEK AG T + TIN S +
Sbjct: 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 214 KELQSSINIFSDAGPDVRWVGNEKGF-----------AGSTCWSTINRTSLS 254
K L + N++ D P+V W+ NEK AG T + TIN S +
Sbjct: 133 KALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184
>pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase
Cytokine
pdb|1Q11|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tyrosyl-Trna Synthetase With Tyrosinol
Length = 372
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 269 AKGTDWLPAECDVSIRKG---WFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTG 325
+K D+L A C+V+I + + P +L EL YY +V + + + VP
Sbjct: 57 SKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLK 116
Query: 326 LISETDVQRLREF 338
I TD Q +E+
Sbjct: 117 FIKGTDYQLSKEY 129
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 118 EHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQ 175
E+ H +G+G V + N ++G VG Y SP H + ++ NE Y+++
Sbjct: 51 EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSP---HLSTFRERIRLNEEYISE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,809,861
Number of Sequences: 62578
Number of extensions: 702120
Number of successful extensions: 1601
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1532
Number of HSP's gapped (non-prelim): 48
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)