Query 011170
Match_columns 492
No_of_seqs 202 out of 1124
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00812 Alpha_L_fucos Alpha 100.0 2.8E-82 6E-87 659.4 26.6 294 23-352 4-344 (384)
2 PF01120 Alpha_L_fucos: Alpha- 100.0 1.9E-82 4.2E-87 655.2 22.1 301 8-343 3-338 (346)
3 COG3669 Alpha-L-fucosidase [Ca 100.0 1E-74 2.2E-79 582.4 22.4 411 32-479 4-430 (430)
4 KOG3340 Alpha-L-fucosidase [Ca 100.0 5.3E-68 1.2E-72 519.8 21.4 313 9-353 5-364 (454)
5 PF14871 GHL6: Hypothetical gl 99.7 3E-16 6.5E-21 140.8 9.6 104 83-193 1-132 (132)
6 cd00057 FA58C Substituted upda 99.1 1.5E-09 3.3E-14 97.3 14.0 114 353-479 11-142 (143)
7 PF00754 F5_F8_type_C: F5/8 ty 98.7 4.5E-07 9.8E-12 78.8 13.1 112 356-476 2-129 (129)
8 PF14488 DUF4434: Domain of un 98.1 6.3E-05 1.4E-09 70.3 13.5 131 80-220 15-155 (166)
9 PF02638 DUF187: Glycosyl hydr 97.8 0.00019 4.2E-09 73.6 11.4 107 84-192 21-161 (311)
10 smart00607 FTP eel-Fucolectin 97.2 0.0034 7.4E-08 57.8 10.9 131 348-482 2-148 (151)
11 PF02065 Melibiase: Melibiase; 97.1 0.0034 7.4E-08 66.5 11.0 132 84-224 60-232 (394)
12 cd08366 APC10 APC10 subunit of 96.6 0.037 8E-07 50.3 12.2 117 353-479 6-138 (139)
13 smart00231 FA58C Coagulation f 96.5 0.08 1.7E-06 47.5 13.5 111 354-479 12-137 (139)
14 KOG3111 D-ribulose-5-phosphate 95.4 0.19 4.1E-06 47.9 10.9 88 83-197 75-180 (224)
15 COG1649 Uncharacterized protei 95.4 0.29 6.3E-06 52.1 13.7 137 77-225 56-207 (418)
16 PF00150 Cellulase: Cellulase 95.3 0.16 3.5E-06 50.1 11.0 133 83-224 22-170 (281)
17 cd08666 APC10-HECTD3 APC10-lik 93.8 0.088 1.9E-06 47.5 4.4 52 355-415 9-60 (134)
18 PF03256 APC10: Anaphase-promo 93.5 1.3 2.9E-05 42.5 12.3 122 351-482 31-168 (193)
19 TIGR02402 trehalose_TreZ malto 93.5 0.67 1.5E-05 51.4 11.7 136 86-224 115-279 (542)
20 PRK08005 epimerase; Validated 93.4 0.56 1.2E-05 45.6 9.7 104 83-223 69-190 (210)
21 PRK09722 allulose-6-phosphate 92.9 0.87 1.9E-05 44.9 10.3 88 83-195 70-178 (229)
22 cd08159 APC10-like APC10-like 92.5 1.3 2.9E-05 39.8 10.0 112 354-479 5-129 (129)
23 cd08365 APC10-like1 APC10-like 91.8 1.4 3E-05 39.7 9.3 91 370-468 16-117 (131)
24 cd06593 GH31_xylosidase_YicI Y 91.8 2.4 5.3E-05 43.2 12.4 131 84-226 26-207 (308)
25 PF00834 Ribul_P_3_epim: Ribul 91.7 1.1 2.4E-05 43.2 9.2 105 83-223 68-193 (201)
26 PRK08745 ribulose-phosphate 3- 91.6 3.1 6.6E-05 40.9 12.3 105 83-223 73-198 (223)
27 PRK08091 ribulose-phosphate 3- 91.3 3.5 7.5E-05 40.7 12.3 105 83-223 79-206 (228)
28 PRK12313 glycogen branching en 91.2 2.7 5.8E-05 47.5 13.1 138 84-224 173-360 (633)
29 cd08665 APC10-CUL7 APC10-like 91.1 0.31 6.7E-06 43.8 4.4 44 368-416 13-56 (131)
30 PLN02229 alpha-galactosidase 90.9 6.3 0.00014 42.4 14.6 115 91-222 94-212 (427)
31 cd06592 GH31_glucosidase_KIAA1 90.5 1.8 3.8E-05 44.3 9.9 100 84-196 32-166 (303)
32 cd06589 GH31 The enzymes of gl 90.3 1.5 3.3E-05 43.8 9.0 93 82-197 24-118 (265)
33 KOG3437 Anaphase-promoting com 90.2 6.7 0.00014 37.0 12.3 105 368-480 36-157 (184)
34 cd08667 APC10-ZZEF1 APC10/DOC1 90.1 3.4 7.4E-05 37.2 10.1 103 369-479 14-130 (131)
35 TIGR01515 branching_enzym alph 89.9 5.1 0.00011 45.2 13.8 137 85-224 160-347 (613)
36 PF07738 Sad1_UNC: Sad1 / UNC- 88.8 5.5 0.00012 35.5 10.6 105 370-480 7-133 (135)
37 COG3867 Arabinogalactan endo-1 88.7 2.3 4.9E-05 43.4 8.7 70 84-164 65-137 (403)
38 PLN02692 alpha-galactosidase 88.1 5.4 0.00012 42.7 11.6 113 92-221 88-205 (412)
39 PLN02447 1,4-alpha-glucan-bran 87.9 5.8 0.00013 45.7 12.4 137 84-223 253-443 (758)
40 PRK05402 glycogen branching en 87.2 6.9 0.00015 45.0 12.7 137 85-224 269-456 (726)
41 COG0036 Rpe Pentose-5-phosphat 86.4 15 0.00032 36.0 12.6 104 83-223 72-196 (220)
42 PLN02960 alpha-amylase 86.4 9.8 0.00021 44.4 13.1 136 85-223 420-608 (897)
43 TIGR02104 pulA_typeI pullulana 85.8 9 0.0002 43.1 12.5 134 86-224 168-347 (605)
44 TIGR02102 pullulan_Gpos pullul 85.0 13 0.00027 44.8 13.6 133 88-225 486-671 (1111)
45 PRK08883 ribulose-phosphate 3- 84.7 9 0.0002 37.5 10.5 105 83-223 69-194 (220)
46 PLN02808 alpha-galactosidase 83.8 12 0.00025 39.9 11.5 111 91-216 63-176 (386)
47 PRK12568 glycogen branching en 83.3 24 0.00053 40.6 14.5 136 84-224 272-460 (730)
48 TIGR02100 glgX_debranch glycog 83.2 12 0.00025 43.0 12.0 137 87-224 189-376 (688)
49 cd08664 APC10-HERC2 APC10-like 83.1 1.8 4E-05 39.8 4.5 51 355-417 30-80 (152)
50 PF01055 Glyco_hydro_31: Glyco 83.0 9.4 0.0002 40.9 10.7 104 83-197 44-182 (441)
51 PRK14057 epimerase; Provisiona 82.5 24 0.00053 35.4 12.5 105 83-223 86-220 (254)
52 PRK13125 trpA tryptophan synth 82.3 2.7 5.8E-05 41.6 5.8 56 77-154 83-138 (244)
53 TIGR02456 treS_nterm trehalose 81.5 17 0.00038 40.2 12.3 62 86-150 32-94 (539)
54 PTZ00170 D-ribulose-5-phosphat 80.6 32 0.00069 33.7 12.6 106 82-223 75-200 (228)
55 cd06594 GH31_glucosidase_YihQ 80.5 9 0.00019 39.5 9.1 95 76-196 64-167 (317)
56 cd06602 GH31_MGAM_SI_GAA This 80.3 15 0.00033 38.2 10.8 102 84-196 26-166 (339)
57 cd06600 GH31_MGAM-like This fa 80.2 10 0.00022 39.0 9.4 100 84-196 26-161 (317)
58 smart00642 Aamy Alpha-amylase 78.6 5.4 0.00012 37.2 6.2 63 89-153 26-91 (166)
59 TIGR02103 pullul_strch alpha-1 78.6 6.7 0.00015 46.1 8.1 88 133-225 405-525 (898)
60 cd06597 GH31_transferase_CtsY 78.1 7.8 0.00017 40.4 7.8 94 83-196 86-188 (340)
61 PRK14705 glycogen branching en 77.6 22 0.00048 43.2 12.2 137 84-224 768-956 (1224)
62 PLN02849 beta-glucosidase 77.3 25 0.00055 38.7 11.8 97 86-192 83-184 (503)
63 PF04476 DUF556: Protein of un 76.4 4 8.7E-05 40.3 4.7 61 80-154 129-189 (235)
64 PRK10785 maltodextrin glucosid 75.9 27 0.00059 39.3 11.8 136 84-224 181-371 (598)
65 cd06522 GH25_AtlA-like AtlA is 75.8 9 0.0002 36.4 7.0 115 82-223 13-129 (192)
66 cd06595 GH31_xylosidase_XylS-l 73.6 24 0.00051 35.9 9.8 108 83-196 26-160 (292)
67 PF01261 AP_endonuc_2: Xylose 73.3 6 0.00013 36.8 5.1 117 83-223 72-189 (213)
68 PLN03231 putative alpha-galact 72.9 21 0.00046 37.5 9.4 88 132-221 86-211 (357)
69 cd06591 GH31_xylosidase_XylS X 72.5 22 0.00047 36.6 9.3 103 83-196 25-160 (319)
70 cd02875 GH18_chitobiase Chitob 72.1 39 0.00086 35.4 11.3 175 4-213 2-179 (358)
71 cd06599 GH31_glycosidase_Aec37 72.0 21 0.00046 36.7 9.1 105 84-196 31-169 (317)
72 cd06604 GH31_glucosidase_II_Ma 72.0 28 0.00061 36.1 10.1 100 83-196 25-160 (339)
73 PRK14864 putative biofilm stre 71.5 11 0.00024 32.7 5.7 22 85-106 67-88 (104)
74 PRK14706 glycogen branching en 71.2 49 0.0011 37.6 12.4 137 85-224 171-356 (639)
75 cd06416 GH25_Lys1-like Lys-1 i 71.0 40 0.00086 31.9 10.2 111 86-224 14-130 (196)
76 TIGR03128 RuMP_HxlA 3-hexulose 70.6 9.5 0.00021 36.2 5.8 47 83-153 63-110 (206)
77 smart00633 Glyco_10 Glycosyl h 69.2 21 0.00045 35.4 8.1 92 131-223 15-122 (254)
78 cd04724 Tryptophan_synthase_al 69.1 9.5 0.00021 37.7 5.6 45 85-154 94-138 (242)
79 PF13200 DUF4015: Putative gly 67.1 13 0.00028 38.5 6.2 107 84-194 15-146 (316)
80 PF00128 Alpha-amylase: Alpha 67.1 5 0.00011 39.7 3.2 62 88-151 10-71 (316)
81 cd06524 GH25_YegX-like YegX is 66.0 14 0.00029 35.1 5.8 46 87-152 14-62 (194)
82 PRK12677 xylose isomerase; Pro 66.0 64 0.0014 34.3 11.4 59 81-153 30-88 (384)
83 TIGR00262 trpA tryptophan synt 65.8 14 0.00031 36.9 6.1 48 82-154 102-149 (256)
84 cd06523 GH25_PlyB-like PlyB is 65.8 16 0.00035 34.2 6.2 99 87-216 14-113 (177)
85 PRK02227 hypothetical protein; 64.2 8 0.00017 38.3 3.8 60 81-154 130-189 (238)
86 cd06415 GH25_Cpl1-like Cpl-1 l 64.0 17 0.00037 34.6 6.1 42 91-152 17-58 (196)
87 PRK03705 glycogen debranching 63.4 94 0.002 35.5 12.7 135 87-224 184-370 (658)
88 PTZ00445 p36-lilke protein; Pr 62.6 17 0.00038 35.5 5.8 64 84-154 31-101 (219)
89 cd06413 GH25_muramidase_1 Unch 62.6 19 0.0004 34.1 6.0 45 87-152 17-61 (191)
90 PLN03244 alpha-amylase; Provis 61.4 38 0.00081 39.4 8.9 64 130-194 439-533 (872)
91 PF00055 Laminin_N: Laminin N- 61.3 12 0.00025 37.2 4.5 57 367-431 53-117 (237)
92 PRK10426 alpha-glucosidase; Pr 61.2 36 0.00077 38.7 8.8 125 76-227 262-412 (635)
93 cd06419 GH25_muramidase_2 Unch 61.1 20 0.00043 34.2 5.9 45 87-152 22-66 (190)
94 COG3669 Alpha-L-fucosidase [Ca 60.8 39 0.00084 36.0 8.3 107 75-194 89-205 (430)
95 cd06416 GH25_Lys1-like Lys-1 i 59.6 18 0.0004 34.2 5.4 63 84-159 73-137 (196)
96 cd03309 CmuC_like CmuC_like. P 59.3 1.4E+02 0.0031 30.8 12.3 81 131-222 154-239 (321)
97 cd06412 GH25_CH-type CH-type ( 59.2 23 0.00049 33.8 6.0 45 89-153 16-60 (199)
98 COG5156 DOC1 Anaphase-promotin 58.8 6 0.00013 36.5 1.8 32 355-391 31-62 (189)
99 cd06598 GH31_transferase_CtsZ 58.7 67 0.0014 33.0 9.7 106 83-196 25-165 (317)
100 TIGR02403 trehalose_treC alpha 58.6 18 0.00039 40.1 5.9 63 86-151 31-94 (543)
101 PRK14510 putative bifunctional 58.5 90 0.002 38.3 12.1 137 82-222 187-371 (1221)
102 PRK10658 putative alpha-glucos 58.2 49 0.0011 37.8 9.3 123 76-227 318-467 (665)
103 cd06525 GH25_Lyc-like Lyc mura 58.1 24 0.00052 33.1 5.8 107 87-223 14-123 (184)
104 PRK13111 trpA tryptophan synth 57.5 21 0.00045 35.9 5.6 54 76-154 97-151 (258)
105 PRK13209 L-xylulose 5-phosphat 55.8 12 0.00026 37.2 3.6 110 84-222 101-211 (283)
106 cd00599 GH25_muramidase Endo-N 55.7 24 0.00053 32.8 5.5 107 87-223 14-124 (186)
107 cd06601 GH31_lyase_GLase GLase 55.5 36 0.00079 35.4 7.2 30 76-105 57-87 (332)
108 cd06603 GH31_GANC_GANAB_alpha 55.3 1E+02 0.0022 32.0 10.5 102 84-195 26-162 (339)
109 PRK07279 dnaE DNA polymerase I 53.1 33 0.00072 41.1 7.1 62 53-150 1-62 (1034)
110 PF06588 Muskelin_N: Muskelin 52.5 25 0.00054 33.9 4.9 52 368-431 18-80 (199)
111 PF01183 Glyco_hydro_25: Glyco 51.8 33 0.00071 31.9 5.7 101 89-215 13-117 (181)
112 PRK09852 cryptic 6-phospho-bet 51.4 21 0.00046 39.0 4.8 95 88-192 77-177 (474)
113 cd00019 AP2Ec AP endonuclease 50.3 9.2 0.0002 38.1 1.7 91 84-195 87-179 (279)
114 PRK09441 cytoplasmic alpha-amy 49.9 30 0.00065 37.7 5.8 64 84-150 24-99 (479)
115 PF13380 CoA_binding_2: CoA bi 49.7 27 0.00059 30.4 4.4 38 84-148 68-105 (116)
116 TIGR01463 mtaA_cmuA methyltran 49.6 3.1E+02 0.0067 28.1 13.7 77 132-221 180-259 (340)
117 PF13199 Glyco_hydro_66: Glyco 49.5 32 0.00069 38.5 5.9 137 83-225 119-308 (559)
118 COG0106 HisA Phosphoribosylfor 49.1 35 0.00076 33.9 5.5 54 79-153 144-197 (241)
119 KOG1094 Discoidin domain recep 48.0 68 0.0015 36.2 7.9 105 354-465 39-163 (807)
120 PRK09856 fructoselysine 3-epim 47.3 20 0.00043 35.5 3.6 111 84-221 92-204 (275)
121 PLN02814 beta-glucosidase 47.3 27 0.00059 38.5 4.9 62 131-192 116-182 (504)
122 COG1501 Alpha-glucosidases, fa 47.1 1.3E+02 0.0028 35.1 10.5 137 84-227 279-465 (772)
123 PRK05898 dnaE DNA polymerase I 47.1 48 0.001 39.4 7.1 62 53-150 1-62 (971)
124 PRK10933 trehalose-6-phosphate 46.7 41 0.00089 37.5 6.3 60 84-151 35-100 (551)
125 cd02871 GH18_chitinase_D-like 46.4 1.1E+02 0.0024 31.3 9.0 59 132-193 60-118 (312)
126 smart00633 Glyco_10 Glycosyl h 45.9 1E+02 0.0022 30.4 8.4 29 84-112 18-46 (254)
127 PF13163 DUF3999: Protein of u 45.7 91 0.002 33.6 8.5 80 398-482 118-212 (429)
128 PF13460 NAD_binding_10: NADH( 45.6 22 0.00049 32.4 3.5 55 79-156 46-100 (183)
129 PRK15014 6-phospho-beta-glucos 45.6 30 0.00065 37.8 4.9 61 131-191 109-174 (477)
130 TIGR00510 lipA lipoate synthas 44.9 60 0.0013 33.4 6.7 51 84-151 96-148 (302)
131 PLN02763 hydrolase, hydrolyzin 44.9 84 0.0018 37.5 8.6 28 167-196 310-337 (978)
132 smart00136 LamNT Laminin N-ter 44.6 31 0.00068 34.2 4.4 44 368-416 58-107 (238)
133 cd06414 GH25_LytC-like The Lyt 44.5 54 0.0012 30.9 5.9 112 87-223 15-132 (191)
134 KOG1065 Maltase glucoamylase a 43.7 43 0.00094 38.7 5.8 128 76-222 344-489 (805)
135 PTZ00032 60S ribosomal protein 43.7 41 0.00089 32.5 4.8 42 85-148 170-211 (211)
136 PRK13813 orotidine 5'-phosphat 43.2 40 0.00087 32.3 4.9 47 84-154 69-115 (215)
137 PF07488 Glyco_hydro_67M: Glyc 42.6 1.3E+02 0.0029 31.0 8.6 118 49-187 21-152 (328)
138 cd06533 Glyco_transf_WecG_TagA 42.3 1.5E+02 0.0033 27.4 8.6 73 131-224 32-106 (171)
139 TIGR01182 eda Entner-Doudoroff 42.1 42 0.00091 32.5 4.8 39 80-148 66-104 (204)
140 PRK09593 arb 6-phospho-beta-gl 41.2 46 0.001 36.4 5.5 62 131-192 113-179 (478)
141 PF10673 DUF2487: Protein of u 40.8 27 0.00059 31.9 3.1 23 85-107 74-96 (142)
142 PF01229 Glyco_hydro_39: Glyco 40.4 28 0.00061 38.0 3.7 133 85-223 43-200 (486)
143 cd06542 GH18_EndoS-like Endo-b 40.3 1.9E+02 0.0041 28.3 9.4 60 132-192 51-111 (255)
144 PLN02998 beta-glucosidase 40.2 38 0.00082 37.3 4.7 97 86-192 86-187 (497)
145 PLN03059 beta-galactosidase; P 39.7 6.4E+02 0.014 29.8 14.4 60 284-343 257-343 (840)
146 TIGR00696 wecB_tagA_cpsF bacte 39.7 2.3E+02 0.0049 26.7 9.3 74 130-224 33-107 (177)
147 cd06547 GH85_ENGase Endo-beta- 39.6 34 0.00073 35.8 4.0 86 135-221 49-143 (339)
148 PRK09997 hydroxypyruvate isome 39.5 34 0.00073 33.7 3.8 58 84-152 87-144 (258)
149 TIGR03586 PseI pseudaminic aci 39.2 51 0.0011 34.3 5.2 66 84-150 19-95 (327)
150 PRK09589 celA 6-phospho-beta-g 39.1 46 0.001 36.4 5.1 61 131-191 107-172 (476)
151 PRK13210 putative L-xylulose 5 38.5 48 0.001 32.8 4.8 58 85-153 97-154 (284)
152 PRK09505 malS alpha-amylase; R 38.2 74 0.0016 36.5 6.7 66 84-150 232-310 (683)
153 COG2730 BglC Endoglucanase [Ca 38.1 3E+02 0.0064 29.4 11.0 106 82-197 73-191 (407)
154 PRK14511 maltooligosyl trehalo 37.6 71 0.0015 37.6 6.5 68 84-153 22-90 (879)
155 PLN02591 tryptophan synthase 37.5 62 0.0013 32.4 5.3 54 76-154 86-140 (250)
156 PF10566 Glyco_hydro_97: Glyco 37.3 1.2E+02 0.0025 30.9 7.3 63 83-154 33-95 (273)
157 PF07338 DUF1471: Protein of u 37.1 52 0.0011 25.0 3.7 22 85-106 22-43 (56)
158 PRK13511 6-phospho-beta-galact 36.9 71 0.0015 34.9 6.1 97 85-192 57-157 (469)
159 CHL00200 trpA tryptophan synth 36.8 76 0.0017 31.9 5.9 54 76-154 99-153 (263)
160 PRK13210 putative L-xylulose 5 36.7 2.9E+02 0.0062 27.2 10.1 59 79-151 13-71 (284)
161 PLN02334 ribulose-phosphate 3- 36.4 92 0.002 30.3 6.3 49 83-154 76-124 (229)
162 COG0107 HisF Imidazoleglycerol 36.0 49 0.0011 32.9 4.1 32 79-110 152-183 (256)
163 CHL00073 chlN photochlorophyll 35.8 2.2E+02 0.0047 31.1 9.5 75 131-223 323-397 (457)
164 PF00701 DHDPS: Dihydrodipicol 35.4 1.6E+02 0.0035 29.5 8.1 103 82-224 83-185 (289)
165 TIGR01163 rpe ribulose-phospha 35.0 1.1E+02 0.0025 28.7 6.6 47 83-154 67-113 (210)
166 cd00952 CHBPH_aldolase Trans-o 35.0 1.9E+02 0.0041 29.6 8.6 102 82-224 90-192 (309)
167 PF08139 LPAM_1: Prokaryotic m 34.9 19 0.00042 23.1 0.8 16 1-16 7-22 (25)
168 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.9 4.8E+02 0.01 26.1 11.5 55 77-154 85-140 (275)
169 smart00812 Alpha_L_fucos Alpha 34.8 1.4E+02 0.0029 31.9 7.7 93 131-225 81-200 (384)
170 PLN02877 alpha-amylase/limit d 34.8 1.7E+02 0.0036 35.1 8.9 87 133-224 467-595 (970)
171 KOG0020 Endoplasmic reticulum 34.6 65 0.0014 35.3 5.1 66 96-185 205-272 (785)
172 TIGR03356 BGL beta-galactosida 34.5 66 0.0014 34.6 5.4 95 86-191 58-157 (427)
173 PRK13363 protocatechuate 4,5-d 34.1 81 0.0018 33.0 5.7 67 85-152 78-176 (335)
174 cd03174 DRE_TIM_metallolyase D 33.9 2.8E+02 0.006 27.0 9.4 79 131-222 114-193 (265)
175 TIGR00542 hxl6Piso_put hexulos 33.7 51 0.0011 32.8 4.1 57 85-152 97-153 (279)
176 PRK14582 pgaB outer membrane N 33.3 3.9E+02 0.0085 30.7 11.3 65 85-154 337-403 (671)
177 cd07945 DRE_TIM_CMS Leptospira 33.1 2.1E+02 0.0046 28.9 8.4 201 86-356 78-279 (280)
178 PRK13307 bifunctional formalde 32.5 1E+02 0.0022 33.0 6.2 50 82-155 236-287 (391)
179 PF03102 NeuB: NeuB family; I 32.4 39 0.00083 33.6 2.9 65 87-151 1-75 (241)
180 TIGR02631 xylA_Arthro xylose i 32.4 1.2E+02 0.0027 32.1 6.9 58 81-152 31-88 (382)
181 PF02449 Glyco_hydro_42: Beta- 32.3 38 0.00083 35.5 3.1 93 77-185 2-125 (374)
182 PF03808 Glyco_tran_WecB: Glyc 32.2 4E+02 0.0086 24.7 9.6 75 131-225 34-109 (172)
183 cd04726 KGPDC_HPS 3-Keto-L-gul 32.0 98 0.0021 29.0 5.6 45 86-154 68-113 (202)
184 TIGR00060 L18_bact ribosomal p 31.6 80 0.0017 27.8 4.4 43 84-148 72-114 (114)
185 PLN02361 alpha-amylase 31.5 99 0.0021 33.1 6.0 61 85-150 32-94 (401)
186 PF00232 Glyco_hydro_1: Glycos 31.5 43 0.00092 36.3 3.3 93 88-192 64-163 (455)
187 PLN02635 disproportionating en 31.2 1.4E+02 0.0031 33.3 7.3 60 48-120 27-90 (538)
188 PLN02433 uroporphyrinogen deca 31.1 5.2E+02 0.011 26.7 11.3 75 132-221 179-257 (345)
189 cd02933 OYE_like_FMN Old yello 31.1 2.2E+02 0.0048 29.6 8.4 69 88-158 158-231 (338)
190 COG0329 DapA Dihydrodipicolina 30.9 3.1E+02 0.0067 28.0 9.3 103 82-224 86-189 (299)
191 COG0800 Eda 2-keto-3-deoxy-6-p 30.9 74 0.0016 31.1 4.4 39 80-148 71-109 (211)
192 PLN02899 alpha-galactosidase 30.7 2.6E+02 0.0056 31.7 9.1 88 132-222 113-243 (633)
193 PRK13586 1-(5-phosphoribosyl)- 30.7 59 0.0013 32.0 3.9 34 75-108 139-172 (232)
194 COG1400 SEC65 Signal recogniti 30.5 72 0.0016 27.1 3.8 70 70-144 20-89 (93)
195 PLN02446 (5-phosphoribosyl)-5- 30.2 83 0.0018 31.8 4.8 47 79-141 160-206 (262)
196 cd00954 NAL N-Acetylneuraminic 30.1 5.5E+02 0.012 25.8 10.9 102 83-224 84-186 (288)
197 smart00481 POLIIIAc DNA polyme 30.0 71 0.0015 24.4 3.5 45 81-149 14-58 (67)
198 PF00724 Oxidored_FMN: NADH:fl 29.7 73 0.0016 33.1 4.6 70 88-161 155-232 (341)
199 TIGR01370 cysRS possible cyste 29.6 2.2E+02 0.0047 29.6 7.9 86 136-223 85-210 (315)
200 PF07461 NADase_NGA: Nicotine 29.6 18 0.00038 37.6 0.0 102 372-480 70-194 (446)
201 PLN00196 alpha-amylase; Provis 29.3 1.1E+02 0.0024 33.1 5.9 62 85-150 47-110 (428)
202 TIGR03234 OH-pyruv-isom hydrox 29.0 53 0.0012 32.0 3.3 58 84-152 86-143 (254)
203 cd04747 OYE_like_5_FMN Old yel 29.0 2.6E+02 0.0057 29.4 8.6 68 88-157 150-223 (361)
204 PF03659 Glyco_hydro_71: Glyco 28.9 1E+02 0.0022 32.8 5.6 73 81-185 13-89 (386)
205 PRK13523 NADPH dehydrogenase N 28.9 1.6E+02 0.0035 30.6 7.0 69 89-159 149-221 (337)
206 COG0320 LipA Lipoate synthase 28.7 78 0.0017 32.3 4.3 50 79-145 94-146 (306)
207 PRK10081 entericidin B membran 28.6 35 0.00076 25.4 1.4 23 1-23 2-24 (48)
208 COG0256 RplR Ribosomal protein 28.5 1.2E+02 0.0026 27.2 5.0 42 85-148 84-125 (125)
209 PF11777 DUF3316: Protein of u 28.4 60 0.0013 28.2 3.1 42 1-44 1-42 (114)
210 PRK14114 1-(5-phosphoribosyl)- 27.9 70 0.0015 31.7 3.9 55 78-153 140-194 (241)
211 cd06543 GH18_PF-ChiA-like PF-C 27.8 6.7E+02 0.014 25.6 14.2 123 87-222 17-142 (294)
212 cd03307 Mta_CmuA_like MtaA_Cmu 27.7 6.6E+02 0.014 25.5 12.5 77 132-221 171-248 (326)
213 TIGR01919 hisA-trpF 1-(5-phosp 27.5 82 0.0018 31.2 4.3 36 75-110 142-177 (243)
214 PLN02617 imidazole glycerol ph 27.3 69 0.0015 35.7 4.1 31 79-109 435-465 (538)
215 cd07367 CarBb CarBb is the B s 27.2 1.4E+02 0.003 30.0 5.9 68 86-153 33-112 (268)
216 COG2723 BglB Beta-glucosidase/ 27.1 1.3E+02 0.0029 32.7 6.0 98 85-192 62-165 (460)
217 PRK11709 putative L-ascorbate 26.9 70 0.0015 33.6 3.9 31 79-111 258-288 (355)
218 TIGR01233 lacG 6-phospho-beta- 26.8 1.3E+02 0.0029 32.8 6.1 96 86-192 57-156 (467)
219 TIGR02401 trehalose_TreY malto 26.4 1.5E+02 0.0032 34.9 6.6 67 84-152 18-85 (825)
220 cd00615 Orn_deC_like Ornithine 26.1 1.7E+02 0.0037 29.2 6.4 49 81-150 139-188 (294)
221 PF01120 Alpha_L_fucos: Alpha- 25.9 2.3E+02 0.005 29.5 7.5 91 134-224 93-213 (346)
222 PF06291 Lambda_Bor: Bor prote 25.8 35 0.00075 29.2 1.1 28 1-32 1-28 (97)
223 TIGR03217 4OH_2_O_val_ald 4-hy 25.5 5.5E+02 0.012 26.6 10.2 77 131-222 113-191 (333)
224 cd03465 URO-D_like The URO-D _ 25.0 7.2E+02 0.016 25.0 11.0 79 132-223 168-249 (330)
225 PLN02801 beta-amylase 24.9 5.5E+02 0.012 28.5 10.1 102 84-185 76-230 (517)
226 PLN02801 beta-amylase 24.9 1.7E+02 0.0037 32.3 6.3 61 77-149 321-382 (517)
227 PRK06920 dnaE DNA polymerase I 24.9 96 0.0021 37.6 4.9 45 82-150 19-63 (1107)
228 PRK14507 putative bifunctional 24.8 1.4E+02 0.003 37.9 6.3 69 84-154 760-829 (1693)
229 cd04722 TIM_phosphate_binding 24.7 1.3E+02 0.0027 27.2 4.8 45 88-154 77-123 (200)
230 PRK12595 bifunctional 3-deoxy- 24.6 1.4E+02 0.0029 31.6 5.5 54 85-151 135-188 (360)
231 PLN02705 beta-amylase 24.5 1.6E+02 0.0035 33.2 6.1 75 55-149 533-613 (681)
232 cd00950 DHDPS Dihydrodipicolin 24.3 3.1E+02 0.0067 27.4 7.9 104 81-224 81-184 (284)
233 cd07584 nitrilase_6 Uncharacte 24.0 1.8E+02 0.0038 28.3 6.0 64 85-152 22-85 (258)
234 PRK13209 L-xylulose 5-phosphat 24.0 1.5E+02 0.0033 29.3 5.6 57 79-149 18-74 (283)
235 cd00429 RPE Ribulose-5-phospha 23.7 2.4E+02 0.0052 26.3 6.6 47 83-154 68-114 (211)
236 TIGR03234 OH-pyruv-isom hydrox 23.6 5.4E+02 0.012 24.8 9.4 47 80-151 12-58 (254)
237 PRK13792 lysozyme inhibitor; P 23.4 53 0.0012 29.5 1.9 26 1-31 1-26 (127)
238 cd00408 DHDPS-like Dihydrodipi 23.3 3.9E+02 0.0085 26.5 8.4 103 82-224 79-181 (281)
239 PRK05593 rplR 50S ribosomal pr 23.3 1.4E+02 0.0031 26.3 4.5 43 84-148 75-117 (117)
240 PRK01222 N-(5'-phosphoribosyl) 23.0 3.9E+02 0.0084 25.7 8.0 71 88-194 16-86 (210)
241 PRK02083 imidazole glycerol ph 22.8 88 0.0019 30.8 3.6 31 78-108 149-179 (253)
242 PF13204 DUF4038: Protein of u 22.7 4.3E+02 0.0093 26.7 8.6 137 80-223 28-183 (289)
243 cd02931 ER_like_FMN Enoate red 22.2 1.6E+02 0.0035 31.1 5.6 67 89-157 157-230 (382)
244 PRK06552 keto-hydroxyglutarate 22.2 1.1E+02 0.0024 29.7 4.0 38 81-148 75-112 (213)
245 COG1902 NemA NADH:flavin oxido 22.0 3.2E+02 0.0069 28.9 7.6 110 77-195 134-261 (363)
246 PF12683 DUF3798: Protein of u 21.9 1.7E+02 0.0036 29.8 5.2 87 83-191 118-205 (275)
247 PRK07028 bifunctional hexulose 21.9 1.8E+02 0.0038 31.2 5.9 47 84-155 70-118 (430)
248 PF07555 NAGidase: beta-N-acet 21.8 1.4E+02 0.0029 30.9 4.7 59 86-156 19-80 (306)
249 COG5510 Predicted small secret 21.8 68 0.0015 23.4 1.7 25 1-25 2-26 (44)
250 PRK11052 malQ 4-alpha-glucanot 21.7 4.1E+02 0.0089 30.7 8.9 54 170-223 431-496 (695)
251 PRK13958 N-(5'-phosphoribosyl) 21.5 2.3E+02 0.0051 27.3 6.1 70 88-193 14-83 (207)
252 PF14811 TPD: Protein of unkno 21.5 99 0.0021 28.2 3.2 31 161-191 88-119 (139)
253 PF12276 DUF3617: Protein of u 21.4 83 0.0018 28.6 2.9 16 1-16 1-16 (162)
254 TIGR03649 ergot_EASG ergot alk 21.4 1.9E+02 0.004 28.5 5.6 55 80-155 47-106 (285)
255 PLN02746 hydroxymethylglutaryl 21.4 1.5E+02 0.0032 31.2 5.0 79 132-219 162-241 (347)
256 PRK13397 3-deoxy-7-phosphohept 21.2 1.8E+02 0.0039 29.1 5.3 55 84-151 31-85 (250)
257 PRK08195 4-hyroxy-2-oxovalerat 21.0 8.4E+02 0.018 25.3 10.5 77 131-222 114-192 (337)
258 PF02836 Glyco_hydro_2_C: Glyc 21.0 4.2E+02 0.0091 26.5 8.2 111 82-223 33-155 (298)
259 PRK06015 keto-hydroxyglutarate 20.9 1.2E+02 0.0027 29.2 4.0 38 81-148 63-100 (201)
260 PRK09532 DNA polymerase III su 20.9 1.8E+02 0.004 34.4 6.1 46 81-150 18-63 (874)
261 TIGR01464 hemE uroporphyrinoge 20.8 7.2E+02 0.016 25.4 10.0 75 132-221 180-258 (338)
262 PRK03620 5-dehydro-4-deoxygluc 20.7 8.9E+02 0.019 24.5 10.7 100 83-224 89-188 (303)
263 PRK10781 rcsF outer membrane l 20.6 1.2E+02 0.0027 27.4 3.6 21 83-103 87-108 (133)
264 KOG0496 Beta-galactosidase [Ca 20.5 1.3E+03 0.028 26.4 17.5 199 85-316 52-281 (649)
265 KOG2741 Dimeric dihydrodiol de 20.2 1.6E+02 0.0034 31.0 4.8 52 132-196 110-163 (351)
266 PF02402 Lysis_col: Lysis prot 20.2 53 0.0011 23.9 0.9 21 1-23 1-21 (46)
267 cd03308 CmuA_CmuC_like CmuA_Cm 20.1 9E+02 0.019 25.4 10.7 76 132-219 214-292 (378)
No 1
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=100.00 E-value=2.8e-82 Score=659.39 Aligned_cols=294 Identities=30% Similarity=0.510 Sum_probs=253.8
Q ss_pred ccCCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccCC--CCCCCCC--------------------CCCCCCCCC
Q 011170 23 SKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTD--SEWGTGN--------------------ENPEIFNPL 80 (492)
Q Consensus 23 ~~~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~--~EW~~g~--------------------~~p~~F~p~ 80 (492)
+..|.++|+++..+++|.| |+++|||||||||+||+++ .||+.+. ..+++|||+
T Consensus 4 ~~~~~~~~~sl~~~~~~~W----f~dakfGiFiHWG~ySv~~~~~eW~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~F~p~ 79 (384)
T smart00812 4 QGPYQPTWESLDKRPLPEW----FRDAKFGIFIHWGVYSVPGFGGEWYWRQPNSPEYKHHIKNYGPEFGYKDFAPQFTAE 79 (384)
T ss_pred CCCCCCChhhhhcccChhH----HhcCceEEEEEecccccccCCccccccCCCCcHHHHHHhccCCcccHHHHHhcCCch
Confidence 3578999999999888888 9999999999999999998 8998421 114799999
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP 160 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~ 160 (492)
+|||+|||++||+|||||+|||||||||||||||++|+||++++|+ |||||+||++||||+|||||+|||++|||+|
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p---krDiv~el~~A~rk~Glk~G~Y~S~~DW~~p 156 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP---KRDLVGELADAVRKRGLKFGLYHSLFDWFNP 156 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC---CcchHHHHHHHHHHcCCeEEEEcCHHHhCCC
Confidence 9999999999999999999999999999999999999999988754 6999999999999999999999999999999
Q ss_pred CCCC----------CchhhHHH---HHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCe---eEec
Q 011170 161 RYGH----------DLQYNEYY---LAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSI---NIFS 224 (492)
Q Consensus 161 ~yg~----------~~~y~~~~---~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~---vi~~ 224 (492)
.|+. ...|.+|+ ++||+||++|||| ++|||||+++.. ...|+..+++++++++||++ ||++
T Consensus 157 ~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~~~~--~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 157 LYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGWEAP--DDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCc--cchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 9864 13677777 9999999999999 999999988653 24567899999999999998 6643
Q ss_pred CCCCCcccc--cCCCCCCCcceeeeccCCccccCCCccccccccCCCCCCCCccccceeecCCCCCCCCCCC---CCCHH
Q 011170 225 DAGPDVRWV--GNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSET---PKKLS 299 (492)
Q Consensus 225 ~~g~d~rw~--gne~G~~~~~~w~~~~~~~~~~G~~~~~~~~~~g~~~~~~w~P~E~d~~i~~~Wfy~~~~~---~ks~~ 299 (492)
||. ++..|.. . ...+++.|.+..+.|||+|+||+.+|||++++. +||++
T Consensus 234 ------R~~~~~~~~g~~-----------------~---~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 234 ------RWGGTGCKHGGF-----------------Y---TDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred ------cccccCCCCCCc-----------------c---cCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 554 2222210 0 111234556667889999999999999998853 99999
Q ss_pred HHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHHHH----HHhhcccccc
Q 011170 300 ELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLAE 352 (492)
Q Consensus 300 ~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~wl----~~~f~~~la~ 352 (492)
+||++|+++|||||||||||||++||+||+.++++|++||+|| ++||+|+...
T Consensus 288 ~li~~l~~~Vsk~GnlLLNVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~~ 344 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNVGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPWR 344 (384)
T ss_pred HHHHHHhhhcCCCceEEEccCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCCc
Confidence 9999999999999999999999999999999999999999999 4888887653
No 2
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=100.00 E-value=1.9e-82 Score=655.18 Aligned_cols=301 Identities=36% Similarity=0.650 Sum_probs=217.3
Q ss_pred HHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccCCC---CCCC------C----C---
Q 011170 8 VCLITILFQLTNLASSKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTDS---EWGT------G----N--- 71 (492)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~~---EW~~------g----~--- 71 (492)
++++++|++.+...++..|+++|+++...+ .+.+|+++||||||||||||+++. ||+. + .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~wf~dakfGiFiHwG~ys~~~~~~~eWy~~~~~~~~~~~~~~~~ 78 (346)
T PF01120_consen 3 ISFSLLALQVAQAQASQPYEPTWESLSKHP----RPQWFRDAKFGIFIHWGPYSVPGWGYAEWYGRPMYIMGSYKIPEEE 78 (346)
T ss_dssp -----------------SSSSSCCCHTTSH----HHHHHHHH-EEEEE--SGGGTTTCCHGGGHHHHCCHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccch----hHHHHhhCceeEEEEECcccccccccccccccccccccccccchhh
Confidence 345566666666667778999999877644 445599999999999999999964 8921 0 0
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 72 --ENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 72 --~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
+.++.|||++|||+|||++||+|||||+|||||||||||||||++|+|||+++ ++|||||+||++||||+|||||
T Consensus 79 Y~~~~~~F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~---~~krDiv~El~~A~rk~Glk~G 155 (346)
T PF01120_consen 79 YGDFAKQFNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNS---GPKRDIVGELADACRKYGLKFG 155 (346)
T ss_dssp GGGHGGG---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGG---GGTS-HHHHHHHHHHHTT-EEE
T ss_pred HhhhhhhCCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCC---CCCCCHHHHHHHHHHHcCCeEE
Confidence 23689999999999999999999999999999999999999999999999984 5679999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCc---------------h-hhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHH
Q 011170 150 LYLSPWDRHDPRYGHDL---------------Q-YNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMV 213 (492)
Q Consensus 150 ~Y~S~wD~~~~~yg~~~---------------~-y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i 213 (492)
+|||++|||++.|+... + |++++++||+||++|| ++++|||||+++. ....+...++++++
T Consensus 156 ~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y-~~d~lWfDg~~~~--~~~~~~~~~~~~~i 232 (346)
T PF01120_consen 156 LYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY-KPDILWFDGGWPD--PDEDWDSAELYNWI 232 (346)
T ss_dssp EEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS-TESEEEEESTTSC--CCTHHHHHHHHHHH
T ss_pred EEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCC-CcceEEecCCCCc--cccccCHHHHHHHH
Confidence 99999999999887532 2 4669999999999999 8899999999865 23456679999999
Q ss_pred HhhCCCeeEecCCCCCcccccCCCCCCCcceeeeccCCccccCCCccccccccCCCCCCCCccccceeecCCCCCC-CCC
Q 011170 214 KELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFW-HKS 292 (492)
Q Consensus 214 ~~~qP~~vi~~~~g~d~rw~gne~G~~~~~~w~~~~~~~~~~G~~~~~~~~~~g~~~~~~w~P~E~d~~i~~~Wfy-~~~ 292 (492)
|++||+++|+++ |.+++.+.. . ..+ .+.+.+....+.|||+|++|+.+||| .++
T Consensus 233 ~~~qp~~ii~~r------~~~~~~~~~---d------------~~~----~E~~~~~~~~~~pwE~~~ti~~~W~y~~~~ 287 (346)
T PF01120_consen 233 RKLQPDVIINNR------WGGNEQGDG---D------------YNT----PERGIPGEIQGRPWETCTTIGPSWGYNTPD 287 (346)
T ss_dssp HHHSTTSEEECC------CSSCSSCCB---S------------CCE----ECTTBTTTEEESEEEEEEESSSSSS-CGGG
T ss_pred HHhCCeEEEecc------cCCCCCccc---c------------ccc----hhccCCCCCCCCCccccCcCCCCCcccCCC
Confidence 999999999864 333332211 0 011 12344445667899999999999999 677
Q ss_pred CCCCCHHHHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHHHHH
Q 011170 293 ETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAID 343 (492)
Q Consensus 293 ~~~ks~~~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~wl~ 343 (492)
+.+||+++|+++|+++|||||||||||||++||+||++++++|++||+||+
T Consensus 288 ~~~ks~~~li~~l~~~vs~ngnlLLNigP~~dG~ip~~~~~~L~e~G~Wl~ 338 (346)
T PF01120_consen 288 EKYKSADELIDILVDSVSRNGNLLLNIGPDPDGTIPEEQVERLREIGDWLK 338 (346)
T ss_dssp CGS--HHHHHHHHHHHHTBTEEEEEEE---TTSS--HHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhccCceEEEecCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999995
No 3
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-74 Score=582.42 Aligned_cols=411 Identities=30% Similarity=0.501 Sum_probs=328.2
Q ss_pred CCCCCCCCCHhhHhhhcCceEEEEEecccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCccc
Q 011170 32 PLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCL 111 (492)
Q Consensus 32 ~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~l 111 (492)
+.+.-+.||+-|++|+..+++.|+||+++|+.++||..+.+.|++|||++|||.+||+++|+|||||+|+||||||||||
T Consensus 4 i~~vp~~~sewy~~~~~~e~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDGFaL 83 (430)
T COG3669 4 IKSVPPFPSEWYLAYLYQEGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFAL 83 (430)
T ss_pred cccCCCCCchhHHHhhcccCCceEEeccccccCcccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCCeee
Confidence 33445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC----CCCCCCCCCCCCchhhH-HHHHHHHHHHh-----
Q 011170 112 WPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS----PWDRHDPRYGHDLQYNE-YYLAQLQELLT----- 181 (492)
Q Consensus 112 WpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S----~wD~~~~~yg~~~~y~~-~~~~Ql~EL~t----- 181 (492)
|||+||.+ +|||+|||||||+|+++|+|++||+||+|+| +||.|.+.|.+...++. |+..|+.||++
T Consensus 84 w~t~ys~w---nsvk~GpKrDlvgela~Avr~qGL~FGvy~s~a~h~W~~~~g~~~~~d~~dp~y~~~~~~~~~~~~~~~ 160 (430)
T COG3669 84 WPTDYSVW---NSVKRGPKRDLVGELAKAVREQGLRFGVYLSGAWHPWDFHSGYYADSDEKDPNYYLAQLQELLSGANYG 160 (430)
T ss_pred cccccccc---cccccCCcccHHHHHHHHHHHcCCeeeEeeccCcccccccCCccccccccCcccccccHHHHhcccccc
Confidence 99977776 5899999999999999999999999999999 89999888876554443 44788888775
Q ss_pred ccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEecCCCCCcccccCCCCCCCcceeeeccCCccccCCCccc
Q 011170 182 RYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIV 261 (492)
Q Consensus 182 ~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~d~rw~gne~G~~~~~~w~~~~~~~~~~G~~~~~ 261 (492)
++|+++++|.|++++.+.....+++.+++++|+++||++++|++.|. .+|..+|.|..+ |.-.+ .|..+.+
T Consensus 161 ~~~~~d~~~~dnaw~~~~~~~~~wl~r~~e~i~~y~P~~vyFd~wg~-~~~a~a~y~~~r---~p~~~-----~g~~~~~ 231 (430)
T COG3669 161 NAGPFDEVWLDNAWGNGPAKVNYWLARWFELIRRYQPDLVYFDWWGT-ILWATAEYGYNR---WPGVR-----PGKLETE 231 (430)
T ss_pred cCCCCcchhhcccccCChHHHHHHHHHHHHHHHhhCCCeEEecchhh-hHHhhhhhcccc---Ccccc-----CCcchhh
Confidence 67899999999999864444567899999999999999999998876 777777777654 21111 1221111
Q ss_pred cccccCCCCCCCCccccceeec-CCCCCCCCCCCCCCHHHHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHH
Q 011170 262 DYLSTGDAKGTDWLPAECDVSI-RKGWFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGT 340 (492)
Q Consensus 262 ~~~~~g~~~~~~w~P~E~d~~i-~~~Wfy~~~~~~ks~~~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~ 340 (492)
.+...-.-....|.+.+|..+- .-.|+ +++..+||+++|+.+|+++|||||+|||||||+.||+||+.+++||.+||.
T Consensus 232 ~~~~~~~~g~n~~~~~~~~~p~h~~~~~-~~d~~~Ks~~elv~~l~dvVskgg~llLnIpp~gdG~ip~~~k~rL~d~a~ 310 (430)
T COG3669 232 ARGNYLRHGDNSWTIFTCGGPDHSLRPG-HEDQDYKSVEELVSILFDVVSKGGPLLLNIPPKGDGLIPDLDKERLLDMAG 310 (430)
T ss_pred hhhhhcccccCCCcceeccCCccccccc-ccccccccHHHHhhhhhhhhccCCceEeccCCCCCCcccHHHHHHHHHHHH
Confidence 1111000112345555554433 22455 677789999999999999999999999999999999999999999999999
Q ss_pred HHH----HhhccccccccccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEe
Q 011170 341 AID----TIFSKNLAENCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQE 416 (492)
Q Consensus 341 wl~----~~f~~~la~~a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E 416 (492)
||+ +|+++.+..-. -+..+|+. + +.|.+.++....-.. +.++. +.+|++..++|
T Consensus 311 wl~~~~~ai~g~~pw~~~----------------~~~pt~~~-E-g~~~~~~a~~~~~~d-~~~t~---p~~~~~~l~~~ 368 (430)
T COG3669 311 WLNVNYGAILGLGPWRVG----------------CAGPTDGV-E-GSFTASDADPFIQLD-LRFTT---PKTFDVALLME 368 (430)
T ss_pred HHHHhcccccCCCceeee----------------ccCCCCCc-c-cccccccCCccchhh-cccCC---cccccHHHhhh
Confidence 996 44444433211 11223333 2 555555554421111 56666 56999999999
Q ss_pred ecCCCceeeEEEEEE-CCEEEeeeeeecceEEEeeecCceeeeEEEEEeeccCCCceEeEEEEE
Q 011170 417 AIGLGQRIKRHEIFV-DGKLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLH 479 (492)
Q Consensus 417 ~i~~GQRV~~~~v~~-dG~~v~~gttIG~kri~r~~~~~V~~~~lRi~I~~s~~~P~I~~~~vy 479 (492)
.+..||||++|.+.+ ..+.|.++.+||+++++++ . .+++.+||+.++++...+.|.+++||
T Consensus 369 w~~~g~~i~~~~~t~~~~~rvg~~~~i~~~~~~~~-~-~~~a~~~r~~~~s~~~~~~i~~~~l~ 430 (430)
T COG3669 369 WLTLGQRIAAYSVTVEQDQRVGSGHTIGYKRLLHG-A-VATAPKLRLEIPSSAPALLIREPGLY 430 (430)
T ss_pred hccccceeeeeeehhhhhhhhhhccccceeecccc-c-ceechhhhhcCccccchhhhcccccC
Confidence 999999999999988 3478899999999999998 5 79999999999999999999999886
No 4
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-68 Score=519.76 Aligned_cols=313 Identities=27% Similarity=0.474 Sum_probs=254.0
Q ss_pred HHHHHHHhhhhcc--cccCCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccC--CCCCCC----C----------
Q 011170 9 CLITILFQLTNLA--SSKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFT--DSEWGT----G---------- 70 (492)
Q Consensus 9 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~--~~EW~~----g---------- 70 (492)
++++++++.|... ..-+|+++|+++..+|+|.| +.++|||+|+|||++|++ ++||-. +
T Consensus 5 ~llilfl~~a~~~a~p~tryqp~w~Sld~RPlP~w----~d~akfgiflhWgv~Svp~~gSEWfWw~Wk~~~~P~yv~Fm 80 (454)
T KOG3340|consen 5 LLLILFLSIASCVAGPRTRYQPDWESLDLRPLPAW----YDDAKFGIFLHWGVYSVPSFGSEWFWWYWKGEFGPKYVTFM 80 (454)
T ss_pred hhhHhhhccccccCCCccccCCCchhhccCCCCcc----cccCcceeEEEeeeeecccccchhhhhhhhccCCCceeeec
Confidence 4444445544433 23459999999999999999 899999999999999997 688631 0
Q ss_pred ----------CCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHH
Q 011170 71 ----------NENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNA 140 (492)
Q Consensus 71 ----------~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~A 140 (492)
.+.+++|+|+-|+|.|||+++|++||||||||+|||||||||||+++.+ -+|-+.|||||||+||+.|
T Consensus 81 d~ny~P~fty~df~~~Fta~~fnA~qWa~lfq~sGaryvVLTsKHHeGFtlWPS~~Swn--wNS~dvgpkrDiV~EL~~A 158 (454)
T KOG3340|consen 81 DDNYKPGFTYADFASQFTATLFNASQWADLFQDSGARYVVLTSKHHEGFTLWPSEYSWN--WNSMDVGPKRDIVGELASA 158 (454)
T ss_pred cccCCCCCchhhchhhhhhhhcCHHHHHHHHHhcCceEEEEeecccCceecCCCcCccc--ccccccCccccHHHHHHHH
Confidence 1236899999999999999999999999999999999999999999986 3466689999999999999
Q ss_pred HHHcCCeeEEEeCCCCCCCCCCCCCch--------hhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHH
Q 011170 141 AKARGVDVGLYLSPWDRHDPRYGHDLQ--------YNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAM 212 (492)
Q Consensus 141 crk~Glk~G~Y~S~wD~~~~~yg~~~~--------y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~ 212 (492)
+||+||+||+|||+++|++|.|+++.+ +++.++.|+.||+++|-| +.+|.||.++.+ +++|.-.++...
T Consensus 159 ~rk~dirfGLY~SlfEwfhplyl~d~~~~f~~~~f~~~k~lpem~eLVtkY~P-eviWSDGew~~p--d~YW~s~~FlaW 235 (454)
T KOG3340|consen 159 IRKRDIRFGLYYSLFEWFHPLYLDDKKHLFNTQHFPEEKTLPEMYELVTKYNP-EVIWSDGEWEAP--DDYWNSTEFLAW 235 (454)
T ss_pred HHhcCcceeEeecHHHhhchhhccchhhcccccccchhcchHHHHHHHHhcCC-ceEeeCCCcCCc--hhhhchhhhHHH
Confidence 999999999999999999999998765 788999999999999999 999999998764 355555566666
Q ss_pred HHhhCC--CeeEecCCCCCcccccCCCCCCCcceeeeccCCccccCC-CccccccccCCCCCCCCccccceeec-CCCCC
Q 011170 213 VKELQS--SINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGN-GSIVDYLSTGDAKGTDWLPAECDVSI-RKGWF 288 (492)
Q Consensus 213 i~~~qP--~~vi~~~~g~d~rw~gne~G~~~~~~w~~~~~~~~~~G~-~~~~~~~~~g~~~~~~w~P~E~d~~i-~~~Wf 288 (492)
+..-.| |.||.|| ||.-+..+.. |+ .+-.+.++.|.-...+| |.|++| +.+|+
T Consensus 236 LYN~SPVkd~VV~ND-----RWG~gt~c~H---------------Ggfy~csD~~~Pg~L~~hKW---Enc~tlDk~SWG 292 (454)
T KOG3340|consen 236 LYNDSPVKDTVVVND-----RWGTGTMCKH---------------GGFYTCSDRYNPGKLLEHKW---ENCMTLDKHSWG 292 (454)
T ss_pred hhcCCCccceEEecc-----cccCCccccc---------------CCeeeccccCCCcccchhhh---hhceeeeccccc
Confidence 655555 5555544 7764444432 11 11112223343334455 999999 56999
Q ss_pred CCCCC---CCCCHHHHHHHHHhhhccCceEEEccCCCCCCCCCHHHHHHHHHHHHHH----HHhhccccccc
Q 011170 289 WHKSE---TPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISETDVQRLREFGTAI----DTIFSKNLAEN 353 (492)
Q Consensus 289 y~~~~---~~ks~~~Li~~l~~~V~rngnlLLNigP~~dG~Ip~~~~~~L~e~G~wl----~~~f~~~la~~ 353 (492)
|+++. ++.+..|||..++++|+.||||||||||+.||+|++...+||+++|+|| ++||++.+...
T Consensus 293 ~Rrd~~~Sd~~t~~Eii~qlv~Tvsc~GN~LlNvGPt~~G~I~~iFeeRL~~vGrwl~ingEaIy~t~pW~~ 364 (454)
T KOG3340|consen 293 YRRDMKLSDVNTAYEIIKQLVRTVSCNGNLLLNVGPTKDGTIPPIFEERLREVGRWLKINGEAIYGTRPWIH 364 (454)
T ss_pred hhcccchhhhhhHHHHHHHHHHhEeeCCeEEEeecCCcCCcccHHHHHHHHHhhhhEeecceeEeeccceee
Confidence 99985 5789999999999999999999999999999999999999999999999 59999887654
No 5
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=99.66 E-value=3e-16 Score=140.83 Aligned_cols=104 Identities=38% Similarity=0.695 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC-CCC----
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP-WDR---- 157 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~-wD~---- 157 (492)
||++|++.+|++|+.-+++.+|-|.|+|-|||+... .+|+. ++|+++|+++||+++||++-+|+|. ||-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~----~hp~L--~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~ 74 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGP----RHPGL--KRDLLGEQVEACHERGIRVPAYFDFSWDEDAAE 74 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCc----CCCCC--CcCHHHHHHHHHHHCCCEEEEEEeeecChHHHH
Confidence 899999999999999999999999999999999832 36655 4899999999999999999999985 320
Q ss_pred CCCCC------C-----------------CCchhhHHHHHHHHHHHhccCCceeEEecC
Q 011170 158 HDPRY------G-----------------HDLQYNEYYLAQLQELLTRYGDVREIWFDG 193 (492)
Q Consensus 158 ~~~~y------g-----------------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg 193 (492)
.+|.+ | .+..|.+|+.+|++|++++| ++|++|||+
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y-~~DGiF~D~ 132 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY-DVDGIFFDI 132 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC-CCCEEEecC
Confidence 11211 1 02378899999999999999 569999985
No 6
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=99.11 E-value=1.5e-09 Score=97.28 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=90.1
Q ss_pred ccccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecC--CCceeeEEE
Q 011170 353 NCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIG--LGQRIKRHE 428 (492)
Q Consensus 353 ~a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~--~GQRV~~~~ 428 (492)
.+.|+|||...+ .|.|.++ ||+.. |+|.+..... .+| |||+. +.+|+.|.|+.... .++++++|+
T Consensus 11 ~~~vtaSS~~~~---~~~~~~~-dg~~~-t~W~~~~~~~---~~wi~vDL~~---~~~i~~v~i~~~~~~~~~~~~~~~~ 79 (143)
T cd00057 11 DDQITASSSYSS---GWEASRA-RLNSD-NAWTPAVNDP---PQWLQVDLGK---TRRVTGIQTQGRKGGGSSEWVTSYK 79 (143)
T ss_pred CCCEEEEecCCC---CCCcCee-ecCCC-CcccCCCCCC---CceEEEECCC---CEEEEEEEEccCCCCCccCeeEEEE
Confidence 467999998764 6999999 99999 9999876432 456 77777 67999999999875 689999999
Q ss_pred EEE--CC---EEEee----eeeec-----ceEEEeeecCceeeeEEEEEeeccCCCceEeEEEEE
Q 011170 429 IFV--DG---KLVAE----GTTVG-----HKKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLH 479 (492)
Q Consensus 429 v~~--dG---~~v~~----gttIG-----~kri~r~~~~~V~~~~lRi~I~~s~~~P~I~~~~vy 479 (492)
|++ || +.+.+ ....| ..+.+.| +.|+.++.|||.+++....++| +|+||
T Consensus 80 i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l-~~pv~aRyvRl~~~~~~~~~~l-e~evy 142 (143)
T cd00057 80 VQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDF-PPPIVARYIRILPTTWNGNISL-RLELY 142 (143)
T ss_pred EEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeC-CCCEEEEEEEEEEeecCCccEE-EEEEc
Confidence 999 66 44443 12222 3556678 5479999999999998888999 99998
No 7
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=98.66 E-value=4.5e-07 Score=78.79 Aligned_cols=112 Identities=23% Similarity=0.275 Sum_probs=80.7
Q ss_pred cceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecCCCc-eeeEEEEEE-
Q 011170 356 VKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIGLGQ-RIKRHEIFV- 431 (492)
Q Consensus 356 v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~~GQ-RV~~~~v~~- 431 (492)
|+|||...+......+++++||+.. |+|.+..... ..| |||+. +.+|+.|.|...-..++ ++++|+|++
T Consensus 2 itaSS~~~~~~~~~~~~~~~Dg~~~-t~W~~~~~~~---~~~i~idl~~---~~~i~~i~i~~~~~~~~~~~~~~~i~~s 74 (129)
T PF00754_consen 2 ITASSSYSGYYSAEPASNAFDGDPS-TAWCSNWDDS---PQWIQIDLGK---PYTISGISIQFRNDGNNGRPKSFKIEYS 74 (129)
T ss_dssp EEESSCSTTSSSGGGGGGGGSSSTT-SSEEESSSSS---TEEEEEEEEE---EEEEEEEEEEEESSTTTEEEEEEEEEEE
T ss_pred EEEEEEeCCCCCcchHHheEeCCCC-CEEECCCCCC---CceEEEEeee---eEecceeeecccccccceeeeeeeeeee
Confidence 6788888762222359999999999 9999974222 456 77777 78999999999877777 999999999
Q ss_pred -CC---EEEeee---e-ee-cceEEEeeecCceeeeEEEEEeec---cCCCceEeEE
Q 011170 432 -DG---KLVAEG---T-TV-GHKKLHRLENGVIDGHVVRIKIKE---SRAVPLISSI 476 (492)
Q Consensus 432 -dG---~~v~~g---t-tI-G~kri~r~~~~~V~~~~lRi~I~~---s~~~P~I~~~ 476 (492)
|| +.+.++ . .. +...+. |.+ +++++.|||.+++ ......|+||
T Consensus 75 ~dg~~w~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ryiri~~~~~~~~~~~~~i~Ei 129 (129)
T PF00754_consen 75 NDGSNWTTVASQFYGNTNSGSVVTIS-FFP-PVKARYIRITVTSWNGNNGWVSIAEI 129 (129)
T ss_dssp SSSSSEEEEEETEEEESSSSSSEEEE-EEE-EEEEEEEEEEEEEEESCSSEEEEEEE
T ss_pred cccccccccccceeeccCCCceEEEE-eCC-CeEEEEEEEEEEEECCCCceEEEEeC
Confidence 66 566653 1 12 333344 424 8999999999974 3445667765
No 8
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.10 E-value=6.3e-05 Score=70.35 Aligned_cols=131 Identities=23% Similarity=0.299 Sum_probs=86.1
Q ss_pred CCCCHHHHHH---HHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee--EEEeCC
Q 011170 80 LGLDANQWVN---TAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV--GLYLSP 154 (492)
Q Consensus 80 ~~fD~dqW~~---~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~--G~Y~S~ 154 (492)
.++++++|-+ ..|+.|++++|+.--=..|+.-+||+..+.. +..+..|+|..+.+||.++|||| |+|+++
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~-----~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGG-----FYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCcc-----ccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 5688999965 5678999999999999999999999983322 22345799999999999999997 889987
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCC-CC----ccccHHHHHHHHHhhCCCe
Q 011170 155 WDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNA-PN----MSYYFTDWFAMVKELQSSI 220 (492)
Q Consensus 155 wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~-~~----~~~~~~~~~~~i~~~qP~~ 220 (492)
-.|.. ++...-.+....-+.||.++||.-. =|.|+.-+.+ .. ..-.+..+...++++.|+.
T Consensus 90 ~~w~~---~~~~~~~~~~~~v~~el~~~yg~h~--sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~ 155 (166)
T PF14488_consen 90 DYWDQ---GDLDWEAERNKQVADELWQRYGHHP--SFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGK 155 (166)
T ss_pred hhhhc---cCHHHHHHHHHHHHHHHHHHHcCCC--CCceEEEecccCCcccchHHHHHHHHHHHHHhCCCC
Confidence 44442 2222212222234688999999621 2344432211 11 1113455566677776644
No 9
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.77 E-value=0.00019 Score=73.65 Aligned_cols=107 Identities=21% Similarity=0.390 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCc--cccCCCCCCCCChHHHHHHHHHHcCCeeEEEe--CC-----
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHS--VAHSPWKHGRGDVVQELVNAAKARGVDVGLYL--SP----- 154 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~--v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~--S~----- 154 (492)
-++.++.++++|+.-|++-.+- .|.+|+||++-+++ ....+.+.+..|.++.++++|+|+||++-..+ +.
T Consensus 21 ~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~ 99 (311)
T PF02638_consen 21 IDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV 99 (311)
T ss_pred HHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCch
Confidence 4677888999999999999997 69999999998864 23345556678999999999999999998765 11
Q ss_pred -------CCC---CCCC----C----CC-------CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 155 -------WDR---HDPR----Y----GH-------DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 155 -------wD~---~~~~----y----g~-------~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
.+| .++. + +. .++-.+|...-++||++||. ||++=||
T Consensus 100 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlD 161 (311)
T PF02638_consen 100 SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLD 161 (311)
T ss_pred hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEec
Confidence 011 1111 1 11 13556899999999999996 8999999
No 10
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=97.22 E-value=0.0034 Score=57.83 Aligned_cols=131 Identities=11% Similarity=0.181 Sum_probs=86.0
Q ss_pred cccccccccceeeccCCC-CCCCCCccccCCCCCceeeecCCCCCC-C-CceE--EEecccCCceeeeEEEEEeecC-CC
Q 011170 348 KNLAENCFVKASSQRAGK-GGGFGPENVLDDDHLRTYWAPRDGDGI-S-DDHW--IEIRAADEGLRFNVIRIQEAIG-LG 421 (492)
Q Consensus 348 ~~la~~a~v~ass~~~~~-~~~~~~~~~~Dg~~~~TyWa~~~~~~~-~-~~~w--i~l~~~~~~~~fn~v~l~E~i~-~G 421 (492)
.|+|.+++.+-||...+. .....|++++||+.. +.|....-.++ . ..+| +||+. ..+++.|.|..--. -+
T Consensus 2 ~NvA~~~~a~QSS~~~~~~~~~~~A~~AVDGn~~-~~~~~~scthT~~e~~PWW~VDL~~---~~~V~~V~I~NR~Dcc~ 77 (151)
T smart00607 2 ENVAGRGPATQSTYGRGAPPGLSHASAAIDGNRA-SFTPEGSCSHTEKRSNPWWRVDLLQ---YMTIHSVTITNRGDCCG 77 (151)
T ss_pred ccccCCCceeeccccCCCCccccCHhHcCcCCcc-CCCCCCccccCCCCCCCeEEEeCCC---eEEeeEEEEecCCCCCC
Confidence 467777776666654331 112238899999998 88764322221 1 1345 99998 78999999866432 37
Q ss_pred ceeeEEEEEE-CC-----EE---EeeeeeecceEEEeee-cCceeeeEEEEEeeccCCCceEeEEEEEecC
Q 011170 422 QRIKRHEIFV-DG-----KL---VAEGTTVGHKKLHRLE-NGVIDGHVVRIKIKESRAVPLISSIGLHFDP 482 (492)
Q Consensus 422 QRV~~~~v~~-dG-----~~---v~~gttIG~kri~r~~-~~~V~~~~lRi~I~~s~~~P~I~~~~vy~~~ 482 (492)
+|+..|.|.+ |. .. ...++++.......+. +.++.++.|+|++......-+|+|+.||-.|
T Consensus 78 ~rl~~~eI~IG~s~~~~~~~n~~c~~~~~~~~~~~~~~~c~~~~~GRYV~i~Lpg~~~~L~LCEVeV~~~~ 148 (151)
T smart00607 78 ERITGARILIGNSLENGGINNPNCSTGGLMAGGETKTFCCPPPMIGRYVTVYLPKPNESLILCEVEVNALF 148 (151)
T ss_pred ccccceEEEECCcccccCCcCcccCCCceeCCCceEEEeCCCCCeeEEEEEEecCCCccEEEeEEEEcccC
Confidence 8999999988 32 11 1223344333333332 3249999999999986668899999999765
No 11
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.11 E-value=0.0034 Score=66.52 Aligned_cols=132 Identities=17% Similarity=0.315 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCccc----CCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC----
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCL----WPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW---- 155 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~l----WpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w---- 155 (492)
-.+-++.++++|+.++||= ||+.- +.+.+.+|.+....+- +=++++++.+++.|||||+|+.|.
T Consensus 60 i~~~a~~~~~~G~e~fviD----DGW~~~r~~d~~~~GdW~~~~~kFP----~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVID----DGWFGGRDDDNAGLGDWEPDPKKFP----NGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTTSBECBBTTTST----THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred HHHHHHHHHHhCCEEEEEc----CccccccCCCcccCCceeEChhhhC----CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4567888899999999984 56542 3355677766544333 239999999999999999999541
Q ss_pred ----CCCCCCC-----------C--------CCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCC---CCc---cc--
Q 011170 156 ----DRHDPRY-----------G--------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNA---PNM---SY-- 204 (492)
Q Consensus 156 ----D~~~~~y-----------g--------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~---~~~---~~-- 204 (492)
-..+|++ + ..++..+|+.+++..++..|| |+.|=+|+...... ... ..
T Consensus 132 ~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g-idYiK~D~n~~~~~~~~~~~~~~~~~~ 210 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG-IDYIKWDFNRDITEAGSPSLPEGYHRY 210 (394)
T ss_dssp SSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT--SEEEEE-TS-TTS-SSTTS-GHHHHH
T ss_pred hhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEeccccCCCCCCCCCchHHHHHH
Confidence 1112211 1 124667899999999999998 68887887543211 110 11
Q ss_pred --cHHHHHHHHHhhCCCeeEec
Q 011170 205 --YFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 205 --~~~~~~~~i~~~qP~~vi~~ 224 (492)
.+.++++.+++..|+++|-+
T Consensus 211 ~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 211 VLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEe
Confidence 23457888999999999854
No 12
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=96.64 E-value=0.037 Score=50.34 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=75.0
Q ss_pred ccccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeec--CCCceeeEEEEE
Q 011170 353 NCFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAI--GLGQRIKRHEIF 430 (492)
Q Consensus 353 ~a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i--~~GQRV~~~~v~ 430 (492)
.|..+.||... .|+.++|+|++.+ |||.++... ++||.+...+ .+.+..|.|.=+. .....-+...|.
T Consensus 6 ~a~w~vSS~k~----g~gv~~L~D~~~~-TyWQSDg~q----PH~I~i~f~k-~~~i~~l~i~vd~~~DeSYtP~~I~v~ 75 (139)
T cd08366 6 LAVWSLSSAKP----GNGVDQLRDDSLD-TYWQSDGPQ----PHLINIQFSK-KTDISAVALYLDYKLDESYTPSKISIR 75 (139)
T ss_pred CEEEEEEeCCC----CCCHHHhcCCCCC-ccCCCCCCC----CEEEEEEecC-CcEEEEEEEEEccCCCCCCCCEEEEEE
Confidence 45677888764 5899999999999 999996442 5787776643 3445554443332 223445555555
Q ss_pred E-CC----E---EEeeeeeecceEEEeee---cCceeeeEEEEEeeccCC---CceEeEEEEE
Q 011170 431 V-DG----K---LVAEGTTVGHKKLHRLE---NGVIDGHVVRIKIKESRA---VPLISSIGLH 479 (492)
Q Consensus 431 ~-dG----~---~v~~gttIG~kri~r~~---~~~V~~~~lRi~I~~s~~---~P~I~~~~vy 479 (492)
+ ++ + .+.=....|.-.|.-.+ .+++.+..|+|.|.+... +..|.-+-+|
T Consensus 76 ~G~~~~dl~e~~~v~l~~p~Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~ 138 (139)
T cd08366 76 AGTSPHDLQEVRTVELEEPNGWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVY 138 (139)
T ss_pred EECCcCchhheEEEEcCCCCEEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEec
Confidence 5 32 2 23223346777775221 135888999999998765 6778877776
No 13
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=96.49 E-value=0.08 Score=47.46 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=68.4
Q ss_pred cccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecCCCceeeEEEEEE
Q 011170 354 CFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIGLGQRIKRHEIFV 431 (492)
Q Consensus 354 a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~~GQRV~~~~v~~ 431 (492)
..++|||. .. .+.++ -++++.. ++|.+..... .+| |||+. ..+|+.|.++-.-..++.|..|.+ +
T Consensus 12 ~~itasS~-~~-~~~~~---rL~~~~~-~~W~~~~~~~---~~wlqvDLg~---~~~v~~i~~qg~~~~~~~~~~~~~-~ 78 (139)
T smart00231 12 SQITASSS-YW-AAKIA---RLNGGSD-GAWCPAKNSL---PPWIQVDLGR---TRTVTGVITGGRHGDGDGVTYKLL-Y 78 (139)
T ss_pred ccEEEcCC-CC-CCCcc---CcCcCCC-CcccCCCCCC---CceeEeeccC---cEEEEEEEecccCCCCcEEEEEEE-E
Confidence 35788775 11 11221 1233224 8999865443 456 88887 679999999753234577888887 5
Q ss_pred --CC---EEEee---eeeecc-----eEEEeeecCceeeeEEEEEeeccCCCceEeEEEEE
Q 011170 432 --DG---KLVAE---GTTVGH-----KKLHRLENGVIDGHVVRIKIKESRAVPLISSIGLH 479 (492)
Q Consensus 432 --dG---~~v~~---gttIG~-----kri~r~~~~~V~~~~lRi~I~~s~~~P~I~~~~vy 479 (492)
|| ..+.+ +...|- -....| +.+|.++.|||..+.-...++ ..++||
T Consensus 79 s~dg~~W~~~~~~~~~~f~gn~d~~~~~~~~~-~~~v~ARyvRi~p~~~~~~~~-~r~Ely 137 (139)
T smart00231 79 SDDGNNWTTYKDGNSKVFPGNSDAGTVVVNEF-PPPIVARYIRILPTGWNGNII-LRVELL 137 (139)
T ss_pred EeCCCCEeEEeCCCeEEEeCccCCCceEEEec-CCCEEEEEEEEEEeEcCCCcE-EEEEEE
Confidence 66 33321 112222 234557 448999999999997665555 478888
No 14
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.19 Score=47.91 Aligned_cols=88 Identities=30% Similarity=0.542 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW------- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w------- 155 (492)
+|+||++-+.+|||.-+.+-.. +.. + +.++++-.|+.|||+|+-+-|-
T Consensus 75 ~Peq~V~~~a~agas~~tfH~E----------------~~q--------~-~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~ 129 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTFHYE----------------ATQ--------K-PAELVEKIREKGMKVGLALKPGTPVEDLE 129 (224)
T ss_pred CHHHHHHHHHhcCcceEEEEEe----------------ecc--------C-HHHHHHHHHHcCCeeeEEeCCCCcHHHHH
Confidence 4999999999999987765322 111 2 8899999999999999988651
Q ss_pred ------CC-----CCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCC
Q 011170 156 ------DR-----HDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS 197 (492)
Q Consensus 156 ------D~-----~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~ 197 (492)
|. =+|.||. ..|.+-+++.+++|-++|+.+++ =.||+-+.
T Consensus 130 ~~~~~~D~vLvMtVePGFGG-QkFme~mm~KV~~lR~kyp~l~i-evDGGv~~ 180 (224)
T KOG3111|consen 130 PLAEHVDMVLVMTVEPGFGG-QKFMEDMMPKVEWLREKYPNLDI-EVDGGVGP 180 (224)
T ss_pred HhhccccEEEEEEecCCCch-hhhHHHHHHHHHHHHHhCCCceE-EecCCcCc
Confidence 11 1456663 57888888999999999998543 25776543
No 15
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.29 Score=52.15 Aligned_cols=137 Identities=14% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCCCCCCHHHH---HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCC---CCCCCChHHHHHHHHHHcCCeeEE
Q 011170 77 FNPLGLDANQW---VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPW---KHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 77 F~p~~fD~dqW---~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~---~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
+.+..|+..+. ++.++++|+.=+.+..+ -+|.|||||++.+++... |. ..++.|.++++++.+||+||++-.
T Consensus 56 ~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~-~~G~~lypS~~~p~s~~~-~~~~~~~~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 56 DSRVLFQRQELKDILDDLQKLNFNTVYPQVW-NDGDALYPSAVLPWSDGL-PGVLGVDPGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred CCcccccHHHHHHHHHHHHHcCCceeEEEEe-cCccccccccccccccCc-CcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence 44555666655 55678899999988887 689999999999986542 22 467799999999999999999977
Q ss_pred EeCCCCCCCCCCCCCchhhHHHHHHH-------HHHHhccCC--ceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 151 YLSPWDRHDPRYGHDLQYNEYYLAQL-------QELLTRYGD--VREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 151 Y~S~wD~~~~~yg~~~~y~~~~~~Ql-------~EL~t~YG~--i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
-+.+.-.-.+. ..+. .... ..-.+..++ +..+|+|.+.+.- +.+-..-+.+.|++|.=|.+
T Consensus 134 Wf~~~~~a~~~----s~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pev---q~~i~~lv~evV~~YdvDGI 203 (418)
T COG1649 134 WFNPYRMAPPT----SPLT---KRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEV---QDFITSLVVEVVRNYDVDGI 203 (418)
T ss_pred chhhcccCCCC----ChhH---hhCCCCcccCCCCeEEEecCCceeeeEeCCCChHH---HHHHHHHHHHHHhCCCCCce
Confidence 65432110000 0000 0000 000011111 1467888765441 33333455677888888887
Q ss_pred EecC
Q 011170 222 IFSD 225 (492)
Q Consensus 222 i~~~ 225 (492)
-|+|
T Consensus 204 QfDd 207 (418)
T COG1649 204 QFDD 207 (418)
T ss_pred ecce
Confidence 7754
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.29 E-value=0.16 Score=50.08 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CC--CC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW-DR--HD 159 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w-D~--~~ 159 (492)
..++..+.++++|++.|=+..-- +.+. ....++++.. ..-+-+.+++++|+++||++-+-++.- .| ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~-~~~~---~~~~~~~~~~-----~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~ 92 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGW-EAYQ---EPNPGYNYDE-----TYLARLDRIVDAAQAYGIYVILDLHNAPGWANGG 92 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEES-TSTS---TTSTTTSBTH-----HHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSST
T ss_pred CHHHHHHHHHHCCCCEEEeCCCH-HHhc---CCCCCccccH-----HHHHHHHHHHHHHHhCCCeEEEEeccCccccccc
Confidence 89999999999999998766551 1111 0111111111 124778999999999999999988762 34 22
Q ss_pred CCCCCCchhhHHHHHHHHHHHhcc-CCceeEEecCCCCCCCCCc----------c--ccHHHHHHHHHhhCCCeeEec
Q 011170 160 PRYGHDLQYNEYYLAQLQELLTRY-GDVREIWFDGAKGSNAPNM----------S--YYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 160 ~~yg~~~~y~~~~~~Ql~EL~t~Y-G~i~~lWfDg~~~~~~~~~----------~--~~~~~~~~~i~~~qP~~vi~~ 224 (492)
..+.......+++..-++.|.++| +.-..+-||-.+.+..... . -.+.++++.||+..|+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 93 DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 223332334455555678888898 3334667787665433211 1 135677889999999987753
No 17
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=93.77 E-value=0.088 Score=47.46 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=37.2
Q ss_pred ccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEE
Q 011170 355 FVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQ 415 (492)
Q Consensus 355 ~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~ 415 (492)
.++.||... .|+.++|+||+.+ |||.++..+. ++||.|...+ .+.+..|.|.
T Consensus 9 ~isvSS~k~----g~gv~~L~D~~~~-tyWQSdG~qg---pH~I~l~f~~-~v~i~~l~i~ 60 (134)
T cd08666 9 SIEVSSYTD----DFNVSCLTDGDPD-TYWESDGSQG---QHWIRLHMKK-GTIIKKLLLT 60 (134)
T ss_pred EEEEEcCCC----CCCHHHhccCCCC-ccEecCCCCC---CeEEEEEECC-CcEeeEEEEE
Confidence 366666654 5899999999999 9999975543 5787777654 3456665553
No 18
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=93.52 E-value=1.3 Score=42.47 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=66.4
Q ss_pred ccccccceeeccCCCCCCCCCcccc-CCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeec--CCCceeeEE
Q 011170 351 AENCFVKASSQRAGKGGGFGPENVL-DDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAI--GLGQRIKRH 427 (492)
Q Consensus 351 a~~a~v~ass~~~~~~~~~~~~~~~-Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i--~~GQRV~~~ 427 (492)
-..|..+.||... .|+.+++| |++.+ |||.++..+ ++||++...+ .+.+-.|.|-=+. ..+-.....
T Consensus 31 ~~~a~w~vSS~K~----g~gv~~~LrD~~~~-TyWQSDG~q----pH~I~i~f~k-~v~I~~l~iyvd~~~DeSYtPs~I 100 (193)
T PF03256_consen 31 GSLAVWSVSSCKP----GFGVAELLRDGSTE-TYWQSDGSQ----PHWITIQFHK-RVIISSLSIYVDYKQDESYTPSKI 100 (193)
T ss_dssp GGGSEEEES--BT----TBSCHGHCHSS-TT---EE--SSS----SEEEEEEEEE-EEEE-EEEEEEEHHHHGGGSEEEE
T ss_pred cCceEEEEecCCC----CCCchheeeCCChh-HhhccCCCC----CEEEEEEEcC-CcEEEEEEEEEccCcCCCCCceEE
Confidence 3456677777664 47788555 99999 999996543 5787777632 2334444443221 234456666
Q ss_pred EEEE-CC----EEEee---eeeecceEEEeee--cCceeeeEEEEEeeccCC---CceEeEEEEEecC
Q 011170 428 EIFV-DG----KLVAE---GTTVGHKKLHRLE--NGVIDGHVVRIKIKESRA---VPLISSIGLHFDP 482 (492)
Q Consensus 428 ~v~~-dG----~~v~~---gttIG~kri~r~~--~~~V~~~~lRi~I~~s~~---~P~I~~~~vy~~~ 482 (492)
.|.+ ++ +++.. ....|+-.|.-.+ ..++.+..|+|.|.+... +-.|..|.||-.+
T Consensus 101 ~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~ 168 (193)
T PF03256_consen 101 SVRAGNSPHDLQEVKTVELEEPNGWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPR 168 (193)
T ss_dssp EEEEESSTTT-EEEEEEEECC-EEEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE-
T ss_pred EEEEeCCcCceEEEEEEEecCCCccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCC
Confidence 6766 32 33321 1234665554221 235777889999987553 6899999999653
No 19
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=93.49 E-value=0.67 Score=51.37 Aligned_cols=136 Identities=20% Similarity=0.277 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE---EeCC------C
Q 011170 86 QWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL---YLSP------W 155 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~---Y~S~------w 155 (492)
+-++-+|+.|.+.|-|+--+. .+-.-|-=..++|......+ |..|=+++|+++|+++||++-+ |-|. .
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~--G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~ 192 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY--GGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYL 192 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc--CCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccccc
Confidence 346889999999999987753 22122332333442222222 3357899999999999999976 2221 1
Q ss_pred CCCCC--------CCCCC-----c---hhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCC
Q 011170 156 DRHDP--------RYGHD-----L---QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSS 219 (492)
Q Consensus 156 D~~~~--------~yg~~-----~---~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~ 219 (492)
++..| .+|+. + ...+|+.+.++-.++.|| ||++=||.+.........-.+.++.+.+++..|+
T Consensus 193 ~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~-iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 193 PRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH-FDGLRLDAVHAIADTSAKHILEELAREVHELAAE 271 (542)
T ss_pred cccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC-CcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCC
Confidence 11111 12221 2 445677888888888999 6999999764332111112467788899999999
Q ss_pred ---eeEec
Q 011170 220 ---INIFS 224 (492)
Q Consensus 220 ---~vi~~ 224 (492)
+++..
T Consensus 272 ~~~~~li~ 279 (542)
T TIGR02402 272 LRPVHLIA 279 (542)
T ss_pred CceEEEEE
Confidence 66553
No 20
>PRK08005 epimerase; Validated
Probab=93.39 E-value=0.56 Score=45.61 Aligned_cols=104 Identities=16% Similarity=0.266 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW------- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w------- 155 (492)
||++|++.+.++|+.++.+=...+ .+ +.++.+.+|+.|+|.|+-+.|-
T Consensus 69 ~P~~~i~~~~~~gad~It~H~Ea~------------------------~~-~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAESV------------------------QN-PSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc------------------------cC-HHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 599999999999999887644311 12 3568899999999999999862
Q ss_pred ------CC-----CCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEe
Q 011170 156 ------DR-----HDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 156 ------D~-----~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 223 (492)
|. -+|.|+ ...|.....+.++||....... .++.||+-.. +-...+.+...|.+|.
T Consensus 124 ~~l~~vD~VlvMsV~PGf~-GQ~f~~~~~~KI~~l~~~~~~~-~I~VDGGI~~----------~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 124 YLALQLDALMIMTSEPDGR-GQQFIAAMCEKVSQSREHFPAA-ECWADGGITL----------RAARLLAAAGAQHLVI 190 (210)
T ss_pred HHHHhcCEEEEEEecCCCc-cceecHHHHHHHHHHHHhcccC-CEEEECCCCH----------HHHHHHHHCCCCEEEE
Confidence 11 245555 3568887888888777655442 5999997432 2234455556677664
No 21
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.92 E-value=0.87 Score=44.89 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW------- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w------- 155 (492)
||++|++.+.+||+.++.+=+...+ .+ +..+.+.+|++|+|.|+-++|-
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~-----------------------~~-~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETIN-----------------------GQ-AFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCc-----------------------ch-HHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 5999999999999999887444210 12 3457799999999999999862
Q ss_pred ------CC-----CCCCCCCCchhhHHHHHHHHH---HHhccCCceeEEecCCC
Q 011170 156 ------DR-----HDPRYGHDLQYNEYYLAQLQE---LLTRYGDVREIWFDGAK 195 (492)
Q Consensus 156 ------D~-----~~~~yg~~~~y~~~~~~Ql~E---L~t~YG~i~~lWfDg~~ 195 (492)
|. -+|.++ ...|.....+.+++ ++...|.-..++.||+-
T Consensus 126 ~~l~~vD~VLvMsV~PGf~-GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 178 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFA-GQPFIPEMLDKIAELKALRERNGLEYLIEVDGSC 178 (229)
T ss_pred HHHHhcCEEEEEEEcCCCc-chhccHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 11 135555 34677666655554 44444532568999974
No 22
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=92.54 E-value=1.3 Score=39.76 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=65.6
Q ss_pred cccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeecCCCc--eeeEEEEEE
Q 011170 354 CFVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQ--RIKRHEIFV 431 (492)
Q Consensus 354 a~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i~~GQ--RV~~~~v~~ 431 (492)
|.++.||... +.++|+||+.+ |||.++..+- -+||.+...+ .+.+..|.|.=+. .-+ .=+...|.+
T Consensus 5 a~w~vSS~k~------gv~~L~D~~~~-tyWQSdG~qp---hh~i~l~f~k-~v~i~~l~i~~~~-~DeSYtP~~I~V~~ 72 (129)
T cd08159 5 ASIEVSSNPL------PVSRLTDGNYD-TYWQSDGSQG---SHWIRLFMKK-DVLIRVLAIFVDM-ADSSYMPSLVVVYG 72 (129)
T ss_pred EEEEEecCcc------cHHHhcCCCCC-ccCCCCCCCC---CEEEEEEEcC-CcEEEEEEEEecC-CCCCcCCcEEEEEe
Confidence 3455665432 68999999999 9999986643 2586666532 3455555543332 111 112223333
Q ss_pred -CC-------EEEeeeeeecceEEEeeecCceeeeEEEEEeeccCC---CceEeEEEEE
Q 011170 432 -DG-------KLVAEGTTVGHKKLHRLENGVIDGHVVRIKIKESRA---VPLISSIGLH 479 (492)
Q Consensus 432 -dG-------~~v~~gttIG~kri~r~~~~~V~~~~lRi~I~~s~~---~P~I~~~~vy 479 (492)
++ +.|.=....|.-.|. + +.++.+.-|+|.|.+... +-.|.-|-+|
T Consensus 73 G~~~~dL~e~~~v~l~~p~Gwv~i~-~-~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 73 GHSPSDLRELKDVNIRPSNGWVALL-E-DDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred cCCHHHhheeEEEEecCCCceEEEE-c-CCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 33 233334456776664 4 337888899999996543 4567766654
No 23
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=91.81 E-value=1.4 Score=39.74 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=49.9
Q ss_pred CCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeecCCCc--eeeEEEEEE-CC----EEE---eee
Q 011170 370 GPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQ--RIKRHEIFV-DG----KLV---AEG 439 (492)
Q Consensus 370 ~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i~~GQ--RV~~~~v~~-dG----~~v---~~g 439 (492)
+.++|+||+.+ |||.++..+. .+||.|.... .+.+..|.|.=+ ..-+ .=+...|.+ ++ +++ .=+
T Consensus 16 gv~~L~D~~~~-tyWQSDG~q~---pH~I~i~f~k-~v~i~~l~l~vd-~~DeSYtP~~I~V~~G~~~~dL~e~~~v~v~ 89 (131)
T cd08365 16 DASRLTDGNTS-TYWQSDGSQG---SHWIRLKMKP-DVLVRHLSLAVD-ATDSSYMPQRVVVAGGRSASNLQELRDVNIP 89 (131)
T ss_pred hHHHhhcCCCC-ceEccCCCCC---CEEEEEEEcC-CcEEEEEEEEec-CCCCCCCCcEEEEEecCCHHHheeEEEEEcc
Confidence 68999999999 9999986543 4687777743 344444444332 1111 112223333 32 222 212
Q ss_pred ee-ecceEEEeeecCceeeeEEEEEeeccC
Q 011170 440 TT-VGHKKLHRLENGVIDGHVVRIKIKESR 468 (492)
Q Consensus 440 tt-IG~kri~r~~~~~V~~~~lRi~I~~s~ 468 (492)
.. .|+=.| +++.+....-|+|.|.+..
T Consensus 90 ~~~~g~v~l--l~~~~~~~~~iqI~I~~nh 117 (131)
T cd08365 90 PSVTGYVTL--LEDATISQPYIEIRIKRCR 117 (131)
T ss_pred CCCceeEEE--ccCCceeeEEEEEEEHHHc
Confidence 23 344333 3333567777888888544
No 24
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=91.77 E-value=2.4 Score=43.23 Aligned_cols=131 Identities=18% Similarity=0.330 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCcE--EEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC-CC
Q 011170 84 ANQWVNTAAEAGVSL--MILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH-DP 160 (492)
Q Consensus 84 ~dqW~~~ak~AGaky--vvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~-~~ 160 (492)
..+.|+.+++.|.-. +++=.-+++++- .++|+....-|. | .+++++.+++.|+++++...|.--. .+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~-----~~~f~~d~~~FP----d-~~~~i~~l~~~G~~~~~~~~P~i~~~~~ 95 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQ-----WCDFEFDPDRFP----D-PEGMLSRLKEKGFKVCLWINPYIAQKSP 95 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCc-----ceeeEECcccCC----C-HHHHHHHHHHCCCeEEEEecCCCCCCch
Confidence 467888899999665 444444665532 135655443333 5 4799999999999999998753110 00
Q ss_pred CC--------------C-----------------CCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCC--------
Q 011170 161 RY--------------G-----------------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPN-------- 201 (492)
Q Consensus 161 ~y--------------g-----------------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~-------- 201 (492)
.| + ..++-.+++.++++++.+ +| ++.+|+|.+...+...
T Consensus 96 ~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G-id~~~~D~~e~~p~~~~~~~g~~~ 173 (308)
T cd06593 96 LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG-VDCFKTDFGERIPTDVVYYDGSDG 173 (308)
T ss_pred hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC-CcEEecCCCCCCCccccccCCCCc
Confidence 00 0 012445788899998876 77 6999999875321110
Q ss_pred c----cc---cHHHHHHHHHhhCCC--eeEecCC
Q 011170 202 M----SY---YFTDWFAMVKELQSS--INIFSDA 226 (492)
Q Consensus 202 ~----~~---~~~~~~~~i~~~qP~--~vi~~~~ 226 (492)
. .| .-...++.+++..++ .+++.+.
T Consensus 174 ~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs 207 (308)
T cd06593 174 EKMHNYYALLYNKAVYEATKEVKGEGEAVVWARS 207 (308)
T ss_pred ceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 0 00 123456677777776 5666553
No 25
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=91.67 E-value=1.1 Score=43.23 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC---C--
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWD---R-- 157 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD---~-- 157 (492)
||+.|++.++++|+.++.+ |.+ . .+-+.++.+.+|++|+++|+-+.|-. .
T Consensus 68 ~P~~~i~~~~~~g~~~i~~---H~E---------------~-------~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~ 122 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITF---HAE---------------A-------TEDPKETIKYIKEAGIKAGIALNPETPVEELE 122 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEE---EGG---------------G-------TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGT
T ss_pred cHHHHHHHHHhcCCCEEEE---ccc---------------c-------hhCHHHHHHHHHHhCCCEEEEEECCCCchHHH
Confidence 6899999999999998855 444 0 12345789999999999999987621 0
Q ss_pred -------------CCCCCCCCchhhHHHHHH---HHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 158 -------------HDPRYGHDLQYNEYYLAQ---LQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 158 -------------~~~~yg~~~~y~~~~~~Q---l~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
-+|.++. ..|.+...+. ++++..++|.-..++.||+-... -...+.+..-|.+
T Consensus 123 ~~l~~vD~VlvMsV~PG~~G-q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~----------~~~~~~~aGad~~ 191 (201)
T PF00834_consen 123 PYLDQVDMVLVMSVEPGFGG-QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE----------NIKQLVEAGADIF 191 (201)
T ss_dssp TTGCCSSEEEEESS-TTTSS-B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT----------THHHHHHHT--EE
T ss_pred HHhhhcCEEEEEEecCCCCc-ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH----------HHHHHHHcCCCEE
Confidence 1233432 3566555554 55566666665789999985431 1244555566766
Q ss_pred Ee
Q 011170 222 IF 223 (492)
Q Consensus 222 i~ 223 (492)
|.
T Consensus 192 V~ 193 (201)
T PF00834_consen 192 VA 193 (201)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 26
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=91.59 E-value=3.1 Score=40.89 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW------- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w------- 155 (492)
||+.|++.+.++||.++.+=+.. + .+ +.+..+.+|++|+|.|+-+.|-
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea-----------~-------------~~-~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEA-----------S-------------RH-VHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cc-HHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 59999999999999998875442 0 13 4567899999999999998862
Q ss_pred ------CC-----CCCCCCCCchhhHHHHHHHH---HHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 156 ------DR-----HDPRYGHDLQYNEYYLAQLQ---ELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 156 ------D~-----~~~~yg~~~~y~~~~~~Ql~---EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
|. -+|.|+. ..|.+...+.++ ++..+.+.-..++.||+-.. +-...+.+..+|++
T Consensus 128 ~~l~~vD~VlvMtV~PGf~G-Q~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~----------eti~~l~~aGaDi~ 196 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGG-QAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKA----------DNIGAIAAAGADTF 196 (223)
T ss_pred HHHhhcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCH----------HHHHHHHHcCCCEE
Confidence 10 2455553 467766655554 55555553256899997432 23345566678888
Q ss_pred Ee
Q 011170 222 IF 223 (492)
Q Consensus 222 i~ 223 (492)
|.
T Consensus 197 V~ 198 (223)
T PRK08745 197 VA 198 (223)
T ss_pred EE
Confidence 75
No 27
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=91.32 E-value=3.5 Score=40.67 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC--eeEEEeCCC-----
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGV--DVGLYLSPW----- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Gl--k~G~Y~S~w----- 155 (492)
||++|++.+++||+.++.+=..=+ .+ +.+..+.+|++|+ |.|+-+.|-
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~------------------------~~-~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT------------------------HD-LALTIEWLAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc------------------------cc-HHHHHHHHHHCCCCceEEEEECCCCCHHH
Confidence 599999999999999988743310 13 4578899999999 999999862
Q ss_pred --------CC-----CCCCCCCCchhhHHHHH---HHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCC
Q 011170 156 --------DR-----HDPRYGHDLQYNEYYLA---QLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSS 219 (492)
Q Consensus 156 --------D~-----~~~~yg~~~~y~~~~~~---Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~ 219 (492)
|. -+|.|+. ..|.....+ +++++..+.|.-..++.||+-.. +-...+.+...|
T Consensus 134 i~~~l~~vD~VLiMtV~PGfgG-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~----------~ti~~l~~aGaD 202 (228)
T PRK08091 134 LEPYLDQIDLIQILTLDPRTGT-KAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL----------ELASYLKQHQID 202 (228)
T ss_pred HHHHHhhcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH----------HHHHHHHHCCCC
Confidence 11 2455653 456655544 45556665563246899997432 223455666788
Q ss_pred eeEe
Q 011170 220 INIF 223 (492)
Q Consensus 220 ~vi~ 223 (492)
++|.
T Consensus 203 ~~V~ 206 (228)
T PRK08091 203 WVVS 206 (228)
T ss_pred EEEE
Confidence 8774
No 28
>PRK12313 glycogen branching enzyme; Provisional
Probab=91.23 E-value=2.7 Score=47.52 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CC--
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---SP-WD-- 156 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S~-wD-- 156 (492)
+++.++-+|+.|+..|-|+--.- .+-.-|-=..++|-...+- -|..|=+++|+++|+++||+|.+=+ +. .|
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~--~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR--YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC--CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 45667889999999998876531 1112344344555222222 2335789999999999999998732 11 01
Q ss_pred ---CC---------CC------CCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCCC-------------C-
Q 011170 157 ---RH---------DP------RYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS-------------N- 198 (492)
Q Consensus 157 ---~~---------~~------~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~-------------~- 198 (492)
+. ++ .++. .++..+|+..-++-.++.|| ||++=||..... .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~-iDG~R~D~~~~~~~~d~~~~~~~~~~~ 329 (633)
T PRK12313 251 GLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH-LDGLRVDAVSNMLYLDYDEEGEWTPNK 329 (633)
T ss_pred cccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CcEEEEcChhhhhhcccccccCcCCcc
Confidence 10 00 1110 12445777788888888999 699999954210 0
Q ss_pred -CCC----ccccHHHHHHHHHhhCCCeeEec
Q 011170 199 -APN----MSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 199 -~~~----~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
... ..-.+.++.+.|++..|++++..
T Consensus 330 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 360 (633)
T PRK12313 330 YGGRENLEAIYFLQKLNEVVYLEHPDVLMIA 360 (633)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 000 01135667788999999987764
No 29
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=91.10 E-value=0.31 Score=43.82 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEe
Q 011170 368 GFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQE 416 (492)
Q Consensus 368 ~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E 416 (492)
.+++++|+||+.+ |||.++..+. ++||.|...+ .+.+..|.|.=
T Consensus 13 ~~~~~~L~D~~~~-tyWQSdG~q~---pH~I~i~f~k-~v~I~~l~i~v 56 (131)
T cd08665 13 PHRANKLTDGNPK-TYWESNGSTG---SHYINIHMHR-GVVIRQLYMLV 56 (131)
T ss_pred cccHHHhhcCCCC-ceEccCCCCC---CeEEEEEECC-CcEEEEEEEEe
Confidence 4678999999999 9999986643 5687777644 45566555543
No 30
>PLN02229 alpha-galactosidase
Probab=90.85 E-value=6.3 Score=42.38 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHcCCcEEEEEeeecCCcccCCCC----CCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCc
Q 011170 91 AAEAGVSLMILTAKHHDGFCLWPSK----FTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDL 166 (492)
Q Consensus 91 ak~AGakyvvlTaKHHDGF~lWpS~----~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~ 166 (492)
++++|-+||++= || |-.. ..++-. .|-|-|.+ ++.|++..++.|||||+|-+..-..=..|....
T Consensus 94 l~~~Gy~yv~iD----Dg---W~~~~rd~~G~l~~--d~~rFP~G--~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~ 162 (427)
T PLN02229 94 LADLGYIHVNID----DC---WSNLKRDSKGQLVP--DPKTFPSG--IKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSL 162 (427)
T ss_pred HHhCCCEEEEEc----CC---cCCCCcCCCCCEEE--ChhhcCCc--HHHHHHHHHHCCCceEEeccCCCcccCCCCCCc
Confidence 478899998874 33 3222 122211 12223333 999999999999999999886321111111111
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeE
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINI 222 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 222 (492)
. +..|-.++...+| +|.|=.|++..... ...-.+.++.+.+++-.-.+++
T Consensus 163 g----~e~~DA~~fA~WG-VDylK~D~C~~~~~-~~~~~y~~m~~AL~~tGRpI~~ 212 (427)
T PLN02229 163 F----HEVDDADIFASWG-VDYLKYDNCYNLGI-KPIERYPPMRDALNATGRSIFY 212 (427)
T ss_pred c----HHHHHHHHHHHcC-CCEEEecCCCCCCc-chhHHHHHHHHHHHhhCCCcEE
Confidence 1 2355577778888 58888998865422 1222466777777665444443
No 31
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.48 E-value=1.8 Score=44.35 Aligned_cols=100 Identities=15% Similarity=0.373 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCcEEEEEe--eecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---
Q 011170 84 ANQWVNTAAEAGVSLMILTA--KHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH--- 158 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTa--KHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~--- 158 (492)
..+.++.+++.|...=++.. .+.+++ .+|.....-|. | .+++++..++.|+|++++..|.--.
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~-------g~f~~d~~~FP----d-p~~mi~~l~~~G~k~~l~i~P~i~~~s~ 99 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY-------GDFDFDPTKFP----D-PKGMIDQLHDLGFRVTLWVHPFINTDSE 99 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC-------CccccChhhCC----C-HHHHHHHHHHCCCeEEEEECCeeCCCCH
Confidence 45677778888865444333 444444 45544333332 5 6899999999999999998762100
Q ss_pred ------------------CCCC-----C-------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 159 ------------------DPRY-----G-------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 159 ------------------~~~y-----g-------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
.+.. | ..++-.+++.+++++++..+| |+.+|+|++.+
T Consensus 100 ~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~ 166 (303)
T cd06592 100 NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEA 166 (303)
T ss_pred HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCc
Confidence 0000 0 013446889999999998899 59999998764
No 32
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=90.26 E-value=1.5 Score=43.82 Aligned_cols=93 Identities=16% Similarity=0.328 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCC--ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEH--SVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD 159 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~--~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~ 159 (492)
-+..+.++.+++.|+-.=++.. | .-|-..+.++ +....-+ -| .+++++..++.|+|+.++..|.-
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~l---D--~~~~~~~~~f~~~~d~~~F----pd-p~~~i~~l~~~g~~~~~~~~P~v--- 90 (265)
T cd06589 24 DKVLEVIDGMRENDIPLDGFVL---D--DDYTDGYGDFTFDWDAGKF----PN-PKSMIDELHDNGVKLVLWIDPYI--- 90 (265)
T ss_pred HHHHHHHHHHHHcCCCccEEEE---C--cccccCCceeeeecChhhC----CC-HHHHHHHHHHCCCEEEEEeChhH---
Confidence 3467788888888877444433 1 1133344444 3332222 25 58899999999999999988633
Q ss_pred CCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCC
Q 011170 160 PRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS 197 (492)
Q Consensus 160 ~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~ 197 (492)
.+.+.+++++++..+| |+.+|+|.+.+.
T Consensus 91 ---------~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 118 (265)
T cd06589 91 ---------REWWAEVVKKLLVSLG-VDGFWTDMGEPS 118 (265)
T ss_pred ---------HHHHHHHHHHhhccCC-CCEEeccCCCCC
Confidence 5778899999877888 599999987654
No 33
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=6.7 Score=36.97 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=65.0
Q ss_pred CCCCccccCCCCCceeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecCCCcee--eEEEEEE-CC----EEEee
Q 011170 368 GFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIGLGQRI--KRHEIFV-DG----KLVAE 438 (492)
Q Consensus 368 ~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~~GQRV--~~~~v~~-dG----~~v~~ 438 (492)
.|.+++++|+|.+ |||+++...- +- |.|.+ -+.|.+|+|.-+-..-.-. ++.+|.+ +| +.+..
T Consensus 36 g~pvd~l~Ddn~e-tyWqSdG~~P----H~i~I~F~K---~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~~dl~~~~~ 107 (184)
T KOG3437|consen 36 GFPVDNLRDDNPE-TYWQSDGSQP----HLINIQFHK---RVDIQYVVIFLDFKQDESYTPSKIKIRAGNGFNDLWEIQS 107 (184)
T ss_pred CCChHHhhcCChh-HheecCCCCC----eEEEEEEEe---EEEEEEEEEEEEEecccccCceeEEEEecCChhheeeeeE
Confidence 4889999999999 9999987652 32 77776 5688888887765433211 1222555 66 33333
Q ss_pred eeee---cceEE--EeeecCceeeeEEEEEeeccC---CCceEeEEEEEe
Q 011170 439 GTTV---GHKKL--HRLENGVIDGHVVRIKIKESR---AVPLISSIGLHF 480 (492)
Q Consensus 439 gttI---G~kri--~r~~~~~V~~~~lRi~I~~s~---~~P~I~~~~vy~ 480 (492)
+.-. |.=.| .....++...-.|+|.|.+.- -+-++..|-+|-
T Consensus 108 ~el~ep~GWv~lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~ 157 (184)
T KOG3437|consen 108 VELVEPKGWVHLPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYA 157 (184)
T ss_pred EEEecCCceEEEeeccCCCCceEEEEEEEEeecccccCccceeEEEEEec
Confidence 3333 33322 221134677778888888543 356778888773
No 34
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=90.08 E-value=3.4 Score=37.22 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=59.0
Q ss_pred CCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeecCCCc--eeeEEEEEE-CC----EEEeee--
Q 011170 369 FGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIGLGQ--RIKRHEIFV-DG----KLVAEG-- 439 (492)
Q Consensus 369 ~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i~~GQ--RV~~~~v~~-dG----~~v~~g-- 439 (492)
.+.++|+||+.+ |||.++..+. ++||.|.... .+.+..|.|.=+ ..-+ .=+...|.+ ++ +++..-
T Consensus 14 ~gv~~L~D~~~~-TYWQSDG~q~---pH~I~i~f~~-~v~i~~l~i~v~-~~DeSYtPs~I~I~~G~~~~dL~e~~~v~l 87 (131)
T cd08667 14 ADIDRMTDGETS-TYWQSDGSAR---SHWIRLKMKP-DVVLRHLSIAVA-ATDQSYMPQQVTVSVGRSASSLQEVRDVHI 87 (131)
T ss_pred hhhHHhhcCCCC-ccCccCCCCC---CeEEEEEecC-CeEEEEEEEEEc-CCCCCcCCcEEEEEecCCHhhheeeEEEEc
Confidence 368999999999 9999986543 5688887743 334444443322 2211 112223333 33 333221
Q ss_pred --eeecceEEEeeecCceeeeEEEEEeeccCC---CceEeEEEEE
Q 011170 440 --TTVGHKKLHRLENGVIDGHVVRIKIKESRA---VPLISSIGLH 479 (492)
Q Consensus 440 --ttIG~kri~r~~~~~V~~~~lRi~I~~s~~---~P~I~~~~vy 479 (492)
+..|+-.|.. +.+..+--|+|.|.+... +-.|.-|-+|
T Consensus 88 ~~~~~Gwv~l~~--~~~~~~~~iqI~I~~nhqnG~DthIRgiki~ 130 (131)
T cd08667 88 PSNVTGYVTLLE--NANISYLVVQINIKRCHSDGCDTRIHGLKTI 130 (131)
T ss_pred CCCCceeEEEEc--CCceEEEEEEEEeHHhccCCccceeeEEEEc
Confidence 2236666642 336888889999986543 4566666554
No 35
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.92 E-value=5.1 Score=45.16 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC------
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---SP------ 154 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S~------ 154 (492)
++.++-+|+.|...|-|+--.- .+-..|-=..++|-...+-+ |..+=+++|+++|+++||++.+=+ +.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~--Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF--GTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 4556778999999999876432 11123443344543222222 234679999999999999997732 11
Q ss_pred ---CC----CC--------CCCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCC--------------CCC
Q 011170 155 ---WD----RH--------DPRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKG--------------SNA 199 (492)
Q Consensus 155 ---wD----~~--------~~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~--------------~~~ 199 (492)
++ ++ .+.++. .++-.+|+..-++-+++.|| ||++=||.... .+.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~-iDG~R~D~v~~~~~~~~~~~~~~~~~~~ 316 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH-IDGLRVDAVASMLYLDYSRDEGEWSPNE 316 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC-CcEEEEcCHHHhhhhccccccccccccc
Confidence 11 00 011111 12445788888888999999 69999996310 000
Q ss_pred -----CC-ccccHHHHHHHHHhhCCCeeEec
Q 011170 200 -----PN-MSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 200 -----~~-~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
.. ..-.+.++.+.|++..|++++..
T Consensus 317 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 317 DGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 00 11245677788999999987753
No 36
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=88.78 E-value=5.5 Score=35.51 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCccccCCCCC----ceeeecCCCCCCCCceEEEecccCCceeeeEEEEEeecC----CCceeeEEEEEE--CC-----E
Q 011170 370 GPENVLDDDHL----RTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEAIG----LGQRIKRHEIFV--DG-----K 434 (492)
Q Consensus 370 ~~~~~~Dg~~~----~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~i~----~GQRV~~~~v~~--dG-----~ 434 (492)
.|++++..+.+ -..|+.++.... .. |.|.. ...+..|.|+-.-. .....+.|+|+. ++ .
T Consensus 7 ~p~~il~~~~~~~~~g~Cw~~~g~~~~--~~-I~L~~---~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~ 80 (135)
T PF07738_consen 7 PPSNILSPDKDSYMPGPCWAFEGSKGW--LT-IELSE---PIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWV 80 (135)
T ss_dssp -GGGGGSS-----STT-SEEEETT-EE--EE-EEEEE---EEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--E
T ss_pred ChhheECCCCCcccCCccCccCCCceE--EE-EEcCC---cEEEEEEEEEEeccccCCcCCCCcEEEEEEEeccccccee
Confidence 35566655522 167877654321 12 77877 67888888866544 677889999986 32 4
Q ss_pred EEeeee-eecceEEEeee-cCce--eeeEEEEEeeccCCCc---eEeEEEEEe
Q 011170 435 LVAEGT-TVGHKKLHRLE-NGVI--DGHVVRIKIKESRAVP---LISSIGLHF 480 (492)
Q Consensus 435 ~v~~gt-tIG~kri~r~~-~~~V--~~~~lRi~I~~s~~~P---~I~~~~vy~ 480 (492)
.+.+.+ ....+.+-.|+ +.+. ..+.|+|+|++.-+.+ +|+.|.||-
T Consensus 81 ~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG 133 (135)
T PF07738_consen 81 LLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTCLYRFRVHG 133 (135)
T ss_dssp EEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEEE-EEEEEE
T ss_pred eeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEEEEEEEEEe
Confidence 455555 34445555553 2222 5789999999999887 688888874
No 37
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=88.70 E-value=2.3 Score=43.38 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHH--HHHHHHHHcCCeeEEEeCCCC-CCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQ--ELVNAAKARGVDVGLYLSPWD-RHDP 160 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~--El~~Acrk~Glk~G~Y~S~wD-~~~~ 160 (492)
-..-++.+|++|..||=|-. |.-. ++..-.++.+|..|+-+ |+++-+++.|||+-+=||--| |-+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv--------wndP---~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV--------WNDP---YDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE--------ecCC---ccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccCh
Confidence 45567899999999998864 4332 33445677888999976 677888899999998776555 4566
Q ss_pred CCCC
Q 011170 161 RYGH 164 (492)
Q Consensus 161 ~yg~ 164 (492)
.+-+
T Consensus 134 akQ~ 137 (403)
T COG3867 134 AKQK 137 (403)
T ss_pred hhcC
Confidence 5543
No 38
>PLN02692 alpha-galactosidase
Probab=88.13 E-value=5.4 Score=42.68 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=66.2
Q ss_pred HHcCCcEEEEEeeecCCcccCCCCC----CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-CCCCCCc
Q 011170 92 AEAGVSLMILTAKHHDGFCLWPSKF----TEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-PRYGHDL 166 (492)
Q Consensus 92 k~AGakyvvlTaKHHDGF~lWpS~~----t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~-~~yg~~~ 166 (492)
+++|.+||++= || |-.+. .++-+. |-|-|.+ ++.|++.+++.|||||+|...-...= ..|....
T Consensus 88 ~~~Gy~yv~iD----Dg---W~~~~rd~~G~~~~d--~~kFP~G--~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~ 156 (412)
T PLN02692 88 SKLGYTYVNID----DC---WAEIARDEKGNLVPK--KSTFPSG--IKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSL 156 (412)
T ss_pred hhcCcEEEEEc----CC---cCCCCCCCCCCeeeC--hhhcCCc--HHHHHHHHHHCCCceEEEecCCccccCCCCCCch
Confidence 46688998874 33 43322 222122 2233333 99999999999999999987532110 0011111
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
. +.+|..++...+| +|.|=.|++...... ..-.+.++.+.+++-.-.++
T Consensus 157 ---g-~e~~DA~~fA~WG-vDylK~D~C~~~~~~-~~~~y~~m~~AL~~tGRpI~ 205 (412)
T PLN02692 157 ---G-HEEQDAKTFASWG-IDYLKYDNCNNDGSK-PTVRYPVMTRALMKAGRPIF 205 (412)
T ss_pred ---H-HHHHHHHHHHhcC-CCEEeccccCCCCcc-hhHHHHHHHHHHHHhCCCeE
Confidence 2 3467777778888 588888987644221 22346677777766544444
No 39
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=87.89 E-value=5.8 Score=45.66 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---C------
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---S------ 153 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S------ 153 (492)
+++-++-+|+.|...|-|+.-+- ....-|-=..++|-...+- -|..|=+++|+++|+++||++.+=+ +
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~--~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR--SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc--cCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 36678889999999999997653 2223444444555322222 2334779999999999999997632 1
Q ss_pred ----CCCCCCCC------------CCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCCC---------CCC--
Q 011170 154 ----PWDRHDPR------------YGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS---------NAP-- 200 (492)
Q Consensus 154 ----~wD~~~~~------------yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~---------~~~-- 200 (492)
.+|-..+. ++. ..+..+|+...++-.++.|+ ||++=||+.... +-.
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~-IDGfRfDaV~smlY~~hg~~~~f~~~ 409 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK-FDGFRFDGVTSMLYHHHGLQMAFTGN 409 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC-cccccccchhhhhccccCcccccccC
Confidence 11111111 110 12445788888888999999 699999865321 000
Q ss_pred -Cc---------cc-cHHHHHHHHHhhCCCeeEe
Q 011170 201 -NM---------SY-YFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 201 -~~---------~~-~~~~~~~~i~~~qP~~vi~ 223 (492)
.. .. .+..+-++|++..|+++..
T Consensus 410 ~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 410 YNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 00 01 1345567899999999765
No 40
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.16 E-value=6.9 Score=45.02 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CCCC-
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---SP-WDRH- 158 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S~-wD~~- 158 (492)
+++++-+|+.|...|-|+--.- .+-..|--..++|-... |. -|.-+=+++|+++|+++||++.+=+ +. .|.+
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-~~-~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 346 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-SR-FGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG 346 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-cc-cCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 4556778999999998887642 11113433445553222 22 2335779999999999999998732 11 1100
Q ss_pred -------------------CCCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCCC--------------C-
Q 011170 159 -------------------DPRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS--------------N- 198 (492)
Q Consensus 159 -------------------~~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~--------------~- 198 (492)
++.++. .++..+|+..-++-.++.|| ||++=||..... +
T Consensus 347 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~-iDG~R~D~v~~~~~~~~~~~~g~~~~~~ 425 (726)
T PRK05402 347 LARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH-IDGLRVDAVASMLYLDYSRKEGEWIPNI 425 (726)
T ss_pred hhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC-CcEEEECCHHHhhhcccccccccccccc
Confidence 011110 12445777888888888999 699999953100 0
Q ss_pred ---CCC--ccccHHHHHHHHHhhCCCeeEec
Q 011170 199 ---APN--MSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 199 ---~~~--~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
... ..-.+.++.+.|++..|++++..
T Consensus 426 ~~~~~~~~~~~fl~~~~~~~~~~~p~~~lia 456 (726)
T PRK05402 426 YGGRENLEAIDFLRELNAVVHEEFPGALTIA 456 (726)
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 000 11135667788999999998764
No 41
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=86.38 E-value=15 Score=36.05 Aligned_cols=104 Identities=21% Similarity=0.369 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW------- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w------- 155 (492)
+|+.|++.+.+|||.++.+-+. . + .=+.+..+-.|++|+|.|+-+.|-
T Consensus 72 ~p~~~i~~fa~agad~It~H~E--~---------~--------------~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAE--A---------T--------------EHIHRTIQLIKELGVKAGLVLNPATPLEALE 126 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEec--c---------C--------------cCHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 5899999999999999987443 0 1 124567788999999999999862
Q ss_pred ------C-----CCCCCCCCCchhhHHHHHHHHHHHhccC---CceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 156 ------D-----RHDPRYGHDLQYNEYYLAQLQELLTRYG---DVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 156 ------D-----~~~~~yg~~~~y~~~~~~Ql~EL~t~YG---~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
| -=+|.+|. ..|..-.++.+++|....+ + ..++.||+-.. +-...+.+.-.|++
T Consensus 127 ~~l~~vD~VllMsVnPGfgG-Q~Fi~~~l~Ki~~lr~~~~~~~~-~~IeVDGGI~~----------~t~~~~~~AGad~~ 194 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGG-QKFIPEVLEKIRELRAMIDERLD-ILIEVDGGINL----------ETIKQLAAAGADVF 194 (220)
T ss_pred HHHhhCCEEEEEeECCCCcc-cccCHHHHHHHHHHHHHhcccCC-eEEEEeCCcCH----------HHHHHHHHcCCCEE
Confidence 1 01456663 4677777776666655433 4 57999997432 23455566667777
Q ss_pred Ee
Q 011170 222 IF 223 (492)
Q Consensus 222 i~ 223 (492)
|.
T Consensus 195 Va 196 (220)
T COG0036 195 VA 196 (220)
T ss_pred EE
Confidence 64
No 42
>PLN02960 alpha-amylase
Probab=86.38 E-value=9.8 Score=44.42 Aligned_cols=136 Identities=22% Similarity=0.276 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCcEEEEEeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---C-------
Q 011170 85 NQWVNTAAEAGVSLMILTAKH-HDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---S------- 153 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKH-HDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S------- 153 (492)
+..++-+|+.|...|-|+.-+ |.++.-|-=..++|-...+-+ |.-|=+++|+++|+++||+|.+=+ +
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y--Gtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~ 497 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF--GTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV 497 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCCcccc
Confidence 467888999999999998876 445555665556664333333 235789999999999999997632 1
Q ss_pred ---CCCCC------------CCCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCC-----------CC---
Q 011170 154 ---PWDRH------------DPRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKG-----------SN--- 198 (492)
Q Consensus 154 ---~wD~~------------~~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~-----------~~--- 198 (492)
.+|.. ++.+|. .++-.+|+..-++-+++.|+ ||++=||.... .+
T Consensus 498 ~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh-IDGfR~DAV~sMlY~d~g~~~~~G~~~ 576 (897)
T PLN02960 498 GLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR-VDGFQFHSLGSMLYTHNGFASFTGDLD 576 (897)
T ss_pred chhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC-CCceeecccceeeeeccCccccCCccc
Confidence 11210 111221 12345788888888899999 68888885421 00
Q ss_pred -CCC-----ccc-cHHHHHHHHHhhCCCeeEe
Q 011170 199 -APN-----MSY-YFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 199 -~~~-----~~~-~~~~~~~~i~~~qP~~vi~ 223 (492)
..+ ... .+..+-++|++..|++++.
T Consensus 577 ~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilI 608 (897)
T PLN02960 577 EYCNQYVDRDALIYLILANEMLHQLHPNIITI 608 (897)
T ss_pred ccCCccCCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 000 011 1345556788889998765
No 43
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.80 E-value=9 Score=43.09 Aligned_cols=134 Identities=13% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCc---------ccCCCCCCCCc-ccc----CCCCC-CCCChHHHHHHHHHHcCCeeEE
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGF---------CLWPSKFTEHS-VAH----SPWKH-GRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF---------~lWpS~~t~~~-v~~----sp~~~-~krDiV~El~~Acrk~Glk~G~ 150 (492)
+-++-+|+.|...|-|+--+--.- ..|-=..++|. +.. .|.-+ +..+-+++|+++|+++||++.+
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 347888999999998877653110 01322233442 110 11101 0126799999999999999966
Q ss_pred ---EeCC-------CCCCCCCC----------------CC-----CchhhHHHHHHHHHHHhccCCceeEEecCCCCCCC
Q 011170 151 ---YLSP-------WDRHDPRY----------------GH-----DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNA 199 (492)
Q Consensus 151 ---Y~S~-------wD~~~~~y----------------g~-----~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~ 199 (492)
|-|. ++-..|.| ++ .+...+|+.+-++-.+..|| ||++=||-+.-.+
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~-iDGfR~D~~~~~~- 325 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN-IDGFRFDLMGIHD- 325 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC-CCEEEEechhcCC-
Confidence 3221 11101110 11 12455788888888888999 6999999663221
Q ss_pred CCccccHHHHHHHHHhhCCCeeEec
Q 011170 200 PNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 200 ~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
.-.+.++.+.+++..|+++++.
T Consensus 326 ---~~~~~~~~~~~~~~~p~~~lig 347 (605)
T TIGR02104 326 ---IETMNEIRKALNKIDPNILLYG 347 (605)
T ss_pred ---HHHHHHHHHHHHhhCCCeEEEE
Confidence 1145678888999999998874
No 44
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.01 E-value=13 Score=44.83 Aligned_cols=133 Identities=15% Similarity=0.254 Sum_probs=81.1
Q ss_pred HHHHHHcCCcEEEEEeeec----C---------Ccc------cCCCCCCCCccccCCCCC----C--CCChHHHHHHHHH
Q 011170 88 VNTAAEAGVSLMILTAKHH----D---------GFC------LWPSKFTEHSVAHSPWKH----G--RGDVVQELVNAAK 142 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHH----D---------GF~------lWpS~~t~~~v~~sp~~~----~--krDiV~El~~Acr 142 (492)
++-+|++|...|-|+--+. + .++ .|-=...+|.+-...|.. | +-.=+++|+++|+
T Consensus 486 LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH 565 (1111)
T TIGR02102 486 LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIH 565 (1111)
T ss_pred HHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHH
Confidence 5788999999998877652 1 111 132222333322111211 1 1145899999999
Q ss_pred HcCCeeEE---EeC-----CCCCCCCC--------------CC-C-----CchhhHHHHHHHHHHHhccCCceeEEecCC
Q 011170 143 ARGVDVGL---YLS-----PWDRHDPR--------------YG-H-----DLQYNEYYLAQLQELLTRYGDVREIWFDGA 194 (492)
Q Consensus 143 k~Glk~G~---Y~S-----~wD~~~~~--------------yg-~-----~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~ 194 (492)
++||++.+ |-| .++.-.|. ++ + .+...+|+.+-++-+++.|| ||++=||-.
T Consensus 566 ~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~-VDGFRfDl~ 644 (1111)
T TIGR02102 566 KRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK-VDGFRFDMM 644 (1111)
T ss_pred HCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CcEEEEecc
Confidence 99999966 322 12211111 11 1 12445788888888999999 699999965
Q ss_pred CCCCCCCccccHHHHHHHHHhhCCCeeEecC
Q 011170 195 KGSNAPNMSYYFTDWFAMVKELQSSINIFSD 225 (492)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 225 (492)
...+ ...+..++..+++..|+++++..
T Consensus 645 g~~d----~~~~~~~~~~l~~~dP~~~liGE 671 (1111)
T TIGR02102 645 GDHD----AASIEIAYKEAKAINPNIIMIGE 671 (1111)
T ss_pred ccCC----HHHHHHHHHHHHHhCcCEEEEEe
Confidence 3221 12456778888899999988753
No 45
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=84.74 E-value=9 Score=37.47 Aligned_cols=105 Identities=17% Similarity=0.296 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC------
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWD------ 156 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD------ 156 (492)
||+.|++.++++|+.++.+=+.. + .+ +.++.+.+|++|+|.|+-++|--
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea-----------~-------------~~-~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEA-----------S-------------EH-VDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cc-HHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 59999999999999998875442 0 12 56788999999999999998721
Q ss_pred -------C-----CCCCCCCCchhhHHHH---HHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 157 -------R-----HDPRYGHDLQYNEYYL---AQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 157 -------~-----~~~~yg~~~~y~~~~~---~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
. -+|.+|. ..|..... .+++++..+.|.-..++.||+-.. +-...+.+...|.+
T Consensus 124 ~~l~~~D~vlvMtV~PGfgG-q~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~----------eni~~l~~aGAd~v 192 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGG-QSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV----------DNIREIAEAGADMF 192 (220)
T ss_pred HHHHhCCeEEEEEecCCCCC-ceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH----------HHHHHHHHcCCCEE
Confidence 0 1344443 24544443 344555554443235778887422 12234455667776
Q ss_pred Ee
Q 011170 222 IF 223 (492)
Q Consensus 222 i~ 223 (492)
+.
T Consensus 193 Vv 194 (220)
T PRK08883 193 VA 194 (220)
T ss_pred EE
Confidence 54
No 46
>PLN02808 alpha-galactosidase
Probab=83.80 E-value=12 Score=39.87 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHcCCcEEEEEeeecCCcccCCCCCCCC--ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-CCCCCCch
Q 011170 91 AAEAGVSLMILTAKHHDGFCLWPSKFTEH--SVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-PRYGHDLQ 167 (492)
Q Consensus 91 ak~AGakyvvlTaKHHDGF~lWpS~~t~~--~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~-~~yg~~~~ 167 (492)
++++|-+||++ =|| |..+..+- +..-.|-|-| +=++.|++-+++.|||||+|.......= ..|...
T Consensus 63 l~~~Gy~yv~i----Dd~---W~~~~rd~~G~~~~d~~rFP--~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs-- 131 (386)
T PLN02808 63 LAALGYKYINL----DDC---WAELKRDSQGNLVPKASTFP--SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGS-- 131 (386)
T ss_pred hHHhCCEEEEE----cCC---cCCCCcCCCCCEeeChhhcC--ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcc--
Confidence 57889999998 334 43332211 1111111222 2389999999999999999997532110 001111
Q ss_pred hhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhh
Q 011170 168 YNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKEL 216 (492)
Q Consensus 168 y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~ 216 (492)
| . +.+|..++...+| +|.|=.|++...... ..-.+..+.+.+.+-
T Consensus 132 ~-~-~e~~DA~~fA~WG-vDylK~D~C~~~~~~-~~~~y~~m~~AL~~t 176 (386)
T PLN02808 132 L-G-HEEQDAKTFASWG-IDYLKYDNCENTGTS-PQERYPKMSKALLNS 176 (386)
T ss_pred h-H-HHHHHHHHHHHhC-CCEEeecCcCCCCcc-HHHHHHHHHHHHHHh
Confidence 1 2 3466677777888 588889988654321 222455666666554
No 47
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.29 E-value=24 Score=40.61 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCcEEEEEeee--cCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC----CC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKH--HDGFCLWPSKFTEH-SVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP----WD 156 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKH--HDGF~lWpS~~t~~-~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~----wD 156 (492)
+++.++-+|+.|...|-|+--. ..+ .-|-=..+.| .+. | +-|..+=+++|+++|+++||++.+=.-+ .|
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~-~~wGY~~~~~~a~~--~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFG-GSWGYQPLGLYAPT--A-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCC-CCCCCCCCcCCccC--c-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 4566778899999999887653 221 1222122232 332 2 2344577999999999999999873211 11
Q ss_pred CC--------------C------CCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCC--------------C
Q 011170 157 RH--------------D------PRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAK--------------G 196 (492)
Q Consensus 157 ~~--------------~------~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~--------------~ 196 (492)
.+ + +.|+. .++-.+|+..-++-.++.|| ||++=+|... .
T Consensus 348 ~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh-IDG~R~DAva~mly~d~~r~~g~w~ 426 (730)
T PRK12568 348 AHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH-LDGLRVDAVASMLYRDYGRAEGEWV 426 (730)
T ss_pred ccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC-ceEEEEcCHhHhhhhcccccccccc
Confidence 00 0 01111 12345777888888899999 6999999531 1
Q ss_pred CCC--CC---ccc-cHHHHHHHHHhhCCCeeEec
Q 011170 197 SNA--PN---MSY-YFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 197 ~~~--~~---~~~-~~~~~~~~i~~~qP~~vi~~ 224 (492)
++. .. ... .+.++.+.|++..|++++..
T Consensus 427 pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IA 460 (730)
T PRK12568 427 PNAHGGRENLEAVAFLRQLNREIASQFPGVLTIA 460 (730)
T ss_pred ccccCCccChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 100 00 011 35677789999999998763
No 48
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=83.23 E-value=12 Score=42.97 Aligned_cols=137 Identities=16% Similarity=0.263 Sum_probs=80.4
Q ss_pred HHHHHHHcCCcEEEEEeeecC---------Cc-ccCCCCCCCCccccCCCC-CCCCChHHHHHHHHHHcCCeeEE---Ee
Q 011170 87 WVNTAAEAGVSLMILTAKHHD---------GF-CLWPSKFTEHSVAHSPWK-HGRGDVVQELVNAAKARGVDVGL---YL 152 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHD---------GF-~lWpS~~t~~~v~~sp~~-~~krDiV~El~~Acrk~Glk~G~---Y~ 152 (492)
.++-+|+.|+..|-|+--+.- |. ..|-=...+|..-...+- .|..+=+++|+++|+++||+|.+ |-
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 577889999999998876631 10 012222234422211221 13456799999999999999976 31
Q ss_pred CCCC-----------------C--CCC----C------CCC-----CchhhHHHHHHHHHHHhccCCceeEEecCCCCCC
Q 011170 153 SPWD-----------------R--HDP----R------YGH-----DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSN 198 (492)
Q Consensus 153 S~wD-----------------~--~~~----~------yg~-----~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~ 198 (492)
|.-+ + .++ . .|+ .+...+|+.+-++-+++.|| ||++=||-+...+
T Consensus 269 Ht~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g-IDGfR~D~a~~l~ 347 (688)
T TIGR02100 269 HTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH-VDGFRFDLATTLG 347 (688)
T ss_pred CccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC-CcEEEEechhhhc
Confidence 1100 0 000 0 111 13456788888888999999 6999999765432
Q ss_pred CCCcccc-HHHHHHHHHh--hCCCeeEec
Q 011170 199 APNMSYY-FTDWFAMVKE--LQSSINIFS 224 (492)
Q Consensus 199 ~~~~~~~-~~~~~~~i~~--~qP~~vi~~ 224 (492)
.....+. ...+.+.|++ ..|++++..
T Consensus 348 ~~~~~~~~~~~~~~~i~~d~~~~~~~lig 376 (688)
T TIGR02100 348 RELYGFDMLSGFFTAIRQDPVLAQVKLIA 376 (688)
T ss_pred cccCCCcccHHHHHHHHhCcccCCeEEEE
Confidence 2111111 2456677776 567787764
No 49
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=83.08 E-value=1.8 Score=39.84 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=35.0
Q ss_pred ccceeeccCCCCCCCCCccccCCCCCceeeecCCCCCCCCceEEEecccCCceeeeEEEEEee
Q 011170 355 FVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDGISDDHWIEIRAADEGLRFNVIRIQEA 417 (492)
Q Consensus 355 ~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~wi~l~~~~~~~~fn~v~l~E~ 417 (492)
+++.||. .+++++|+|| .+ |||.++..+. .+||.|.... .+.+..|.|.=.
T Consensus 30 ~~~VSS~------~~~~~~L~D~-~~-TYWQSdG~q~---~HwI~l~~~~-~v~I~~L~i~vd 80 (152)
T cd08664 30 SLTVSSN------ENQAKRLIDG-SG-SYWQSSGSQG---KHWIRLELHP-DVLIHSLKIIVD 80 (152)
T ss_pred EEEEEcC------cccHHHhcCC-CC-CeeccCCCCC---ceEEEEEECC-CcEEEEEEEEec
Confidence 3566654 4679999999 88 9999986542 3797777654 455666555443
No 50
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=82.95 E-value=9.4 Score=40.87 Aligned_cols=104 Identities=19% Similarity=0.433 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC--
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP-- 160 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~-- 160 (492)
+..+.++.+++.|+-.-++..--. |-+.+.+|+....- -.=.+++++.++++|+|++++..|.=....
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~-----~~~~~~~f~~d~~~-----FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~ 113 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDD-----YQDGYGDFTWDPER-----FPDPKQMIDELHDQGIKVVLWVHPFVSNDSPD 113 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GG-----GSBTTBTT-B-TTT-----TTTHHHHHHHHHHTT-EEEEEEESEEETTTTB
T ss_pred HHHHHHHHHHHcCCCccceecccc-----cccccccccccccc-----ccchHHHHHhHhhCCcEEEEEeecccCCCCCc
Confidence 567888899999988877764322 43445566544322 223489999999999999999886211110
Q ss_pred ----------CC------C-----------------CCchhhHHHHHHHHHHHhccCCceeEEecCCCCC
Q 011170 161 ----------RY------G-----------------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS 197 (492)
Q Consensus 161 ----------~y------g-----------------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~ 197 (492)
.| | ..++-.+++.+++++++..|| ++.+|+|.+.+.
T Consensus 114 ~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 182 (441)
T PF01055_consen 114 YENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPS 182 (441)
T ss_dssp -HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTB
T ss_pred chhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcc
Confidence 00 1 012345778899999999999 599999986554
No 51
>PRK14057 epimerase; Provisional
Probab=82.45 E-value=24 Score=35.36 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC---------eeEEEeC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGV---------DVGLYLS 153 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Gl---------k~G~Y~S 153 (492)
||++|++.+.++|+.++++=+.= +. + +.+..+.+|++|+ +.|+=+.
T Consensus 86 ~P~~~i~~~~~aGad~It~H~Ea-----------~~-------------~-~~~~l~~Ir~~G~k~~~~~~~~kaGlAln 140 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAEG-----------DI-------------H-LHHTLSWLGQQTVPVIGGEMPVIRGISLC 140 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeecc-----------cc-------------C-HHHHHHHHHHcCCCcccccccceeEEEEC
Confidence 59999999999999998875541 11 2 3557788999997 6999987
Q ss_pred CC-------------CC-----CCCCCCCCchhhHHHHHHHH---HHHhccCCceeEEecCCCCCCCCCccccHHHHHHH
Q 011170 154 PW-------------DR-----HDPRYGHDLQYNEYYLAQLQ---ELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAM 212 (492)
Q Consensus 154 ~w-------------D~-----~~~~yg~~~~y~~~~~~Ql~---EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~ 212 (492)
|- |. -+|.|+. ..|.+...+.++ +++.+.|.-..++.||+-.. +-...
T Consensus 141 P~Tp~e~i~~~l~~vD~VLvMtV~PGfgG-Q~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~----------~ti~~ 209 (254)
T PRK14057 141 PATPLDVIIPILSDVEVIQLLAVNPGYGS-KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ----------DQLPS 209 (254)
T ss_pred CCCCHHHHHHHHHhCCEEEEEEECCCCCc-hhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH----------HHHHH
Confidence 62 21 2456653 467766655554 45555553357899997432 22345
Q ss_pred HHhhCCCeeEe
Q 011170 213 VKELQSSINIF 223 (492)
Q Consensus 213 i~~~qP~~vi~ 223 (492)
+.+...|++|.
T Consensus 210 l~~aGad~~V~ 220 (254)
T PRK14057 210 LIAQGIDRVVS 220 (254)
T ss_pred HHHCCCCEEEE
Confidence 55667787764
No 52
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.34 E-value=2.7 Score=41.62 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 77 FNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 77 F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
+||-..|+++|++.++++|+..+++- | .|+.- -+=..++.+.||++||++|+-.+|
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~----d----------------lp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFP----D----------------LLIDY--PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEEC----C----------------CCCCc--HHHHHHHHHHHHHcCCCEEEEECC
Confidence 46766799999999999999999991 1 11100 134678999999999999999997
No 53
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=81.49 E-value=17 Score=40.20 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEH-SVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~-~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
+-++-+++.|++.|.|+--+-.+-.-+.=.+++| .|. |. -|..+=+++|+++|+++||++.+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd--~~-~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL--PE-FGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC--hh-hCCHHHHHHHHHHHHHCCCEEEE
Confidence 4477889999999999987643211111112344 232 32 24458899999999999999987
No 54
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=80.55 E-value=32 Score=33.72 Aligned_cols=106 Identities=20% Similarity=0.406 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC-CCCC--
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP-WDRH-- 158 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~-wD~~-- 158 (492)
-+|+.+++.+.++|+.++.+ |-++ ..+-+.+..+++|++|+++|+-+.+ .+..
T Consensus 75 ~~p~~~i~~~~~~Gad~itv---H~ea---------------------~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTF---HIEA---------------------TEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEE---eccC---------------------CchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 46999999999999999877 3221 0233788999999999999998875 1110
Q ss_pred -----------------CCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 159 -----------------DPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 159 -----------------~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
+|.++ ...+.....+.++++...++. ..++.||+-.. +-...+.+...|.+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~-~~I~VdGGI~~----------~ti~~~~~aGad~i 198 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFG-GQSFMHDMMPKVRELRKRYPH-LNIQVDGGINL----------ETIDIAADAGANVI 198 (228)
T ss_pred HHHHccchhhhHHhhhcccCCC-CcEecHHHHHHHHHHHHhccc-CeEEECCCCCH----------HHHHHHHHcCCCEE
Confidence 11121 234555556666776666665 56888887432 12344555677777
Q ss_pred Ee
Q 011170 222 IF 223 (492)
Q Consensus 222 i~ 223 (492)
|.
T Consensus 199 Vv 200 (228)
T PTZ00170 199 VA 200 (228)
T ss_pred EE
Confidence 64
No 55
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=80.45 E-value=9 Score=39.50 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=56.9
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE-----
Q 011170 76 IFNPLGL-DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG----- 149 (492)
Q Consensus 76 ~F~p~~f-D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G----- 149 (492)
.|+|++| ||.+.++.+++.|+|.++.+-=|- + .+ ++ .+-+.+++.|.-+-
T Consensus 64 ~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v---~------~~-----~~----------~~y~~~~~~g~~vk~~~g~ 119 (317)
T cd06594 64 EWDPERYPGLDELIEELKARGIRVLTYINPYL---A------DD-----GP----------LYYEEAKDAGYLVKDADGS 119 (317)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCce---e------cC-----Cc----------hhHHHHHHCCeEEECCCCC
Confidence 3456554 699999999999999988772211 1 11 00 01245555554221
Q ss_pred EEeCC-CCC--CCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 150 LYLSP-WDR--HDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 150 ~Y~S~-wD~--~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
.|.-. |.. ..+++. .++-.+.+.+|+++++..+| |+.+|+|++..
T Consensus 120 ~~~~~~w~g~~~~~Dft-np~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~ 167 (317)
T cd06594 120 PYLVDFGEFDCGVLDLT-NPAARDWFKQVIKEMLLDLG-LSGWMADFGEY 167 (317)
T ss_pred eeeeccCCCCceeeecC-CHHHHHHHHHHHHHHhhhcC-CcEEEecCCCC
Confidence 12211 111 112222 24567889999999988888 69999998753
No 56
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=80.33 E-value=15 Score=38.15 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCcEEEEEe--eecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC--
Q 011170 84 ANQWVNTAAEAGVSLMILTA--KHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-- 159 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTa--KHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~-- 159 (492)
..+.++.+++.|...=++.. .++++ ..+|+....-|.++ ..+++++..++.|+|+.++..|.-.-+
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~-------~~~f~~d~~~FPdp---~~~~mi~~L~~~G~k~~~~i~P~v~~~~~ 95 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR-------RRDFTLDPVRFPGL---KMPEFVDELHANGQHYVPILDPAISANEP 95 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC-------ccceecccccCCCc---cHHHHHHHHHHCCCEEEEEEeCccccCcC
Confidence 56888889999988777654 33333 34554443222222 148999999999999999987631110
Q ss_pred -CCC---------------------------CC-------CchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 160 -PRY---------------------------GH-------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 160 -~~y---------------------------g~-------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
..| |. .++-.+.+.+++++++..+| |+.+|+|++.+
T Consensus 96 ~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep 166 (339)
T cd06602 96 TGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEP 166 (339)
T ss_pred CCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCC
Confidence 000 00 11234678889999999888 59999998754
No 57
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=80.17 E-value=10 Score=39.00 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCcEEEEEee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---
Q 011170 84 ANQWVNTAAEAGVSLMILTAK--HHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH--- 158 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaK--HHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~--- 158 (492)
..+.++.+++.+.-.=++..- +-+++ .+|+....-|. | .+++++.+++.|+|+.++..|.-..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~-------~~f~~d~~~FP----d-p~~~i~~l~~~g~k~~~~~~P~i~~~~~ 93 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMDSY-------RLFTWDPYRFP----E-PKKLIDELHKRNVKLVTIVDPGIRVDQN 93 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhCCC-------CceeechhcCC----C-HHHHHHHHHHCCCEEEEEeeccccCCCC
Confidence 567788888888776665543 22333 33433322232 4 3699999999999999987652110
Q ss_pred CCCC------------------------C-------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 159 DPRY------------------------G-------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 159 ~~~y------------------------g-------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
.+.| | ..++-.+.+.+++++++..+| |+.+|+|++.+
T Consensus 94 ~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep 161 (317)
T cd06600 94 YSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEP 161 (317)
T ss_pred ChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCC
Confidence 0000 0 013456788999999998888 59999998754
No 58
>smart00642 Aamy Alpha-amylase domain.
Probab=78.62 E-value=5.4 Score=37.17 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=41.8
Q ss_pred HHHHHcCCcEEEEEeeecCCc---ccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 89 NTAAEAGVSLMILTAKHHDGF---CLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 89 ~~ak~AGakyvvlTaKHHDGF---~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
+-+++.|++.|.|+--+..+. .-|.=..++|... .| +-|..+=+++|+++|+++||++.+=+-
T Consensus 26 ~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i-~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 26 DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQI-DP-RFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCC-Cc-ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 358999999999988765443 2222122344211 22 223458899999999999999987554
No 59
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=78.56 E-value=6.7 Score=46.07 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHcCCeeEE---EeCC----------CCCCCCCC-------C---------C----CchhhHHHHHHHHHH
Q 011170 133 VVQELVNAAKARGVDVGL---YLSP----------WDRHDPRY-------G---------H----DLQYNEYYLAQLQEL 179 (492)
Q Consensus 133 iV~El~~Acrk~Glk~G~---Y~S~----------wD~~~~~y-------g---------~----~~~y~~~~~~Ql~EL 179 (492)
=+++|+++|+++||++-+ |-|. +|...|.| | + .+...+|+.+-++-.
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W 484 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVW 484 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 478889999999999965 4332 11111111 1 0 123457778888888
Q ss_pred HhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEecC
Q 011170 180 LTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSD 225 (492)
Q Consensus 180 ~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 225 (492)
+..|| ||++=||-..-.+ .-.+.++.+.++++.|++.++..
T Consensus 485 ~~ey~-VDGFRfDlm~~~~----~~f~~~~~~~l~~i~pdi~l~GE 525 (898)
T TIGR02103 485 AKDYK-VDGFRFDLMGHHP----KAQMLAAREAIKALTPEIYFYGE 525 (898)
T ss_pred HHHcC-CCEEEEechhhCC----HHHHHHHHHHHHHhCCCEEEEec
Confidence 88999 6999999664331 12467888999999999988753
No 60
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=78.14 E-value=7.8 Score=40.39 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE-----EEeCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG-----LYLSPWDR 157 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G-----~Y~S~wD~ 157 (492)
||++.++.+++.|+|.++.+.=|-+ .+. .|. + ..+ .++ +.+.+.|+-+- .|..+.-|
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~i~---------~~~----~~~-~-~~~--~~~-~~~~~~g~~vk~~~G~~~~~~~~W 147 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPIIK---------LRP----HPH-G-QAD--NDE-DYAVAQNYLVQRGVGKPYRIPGQW 147 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCccc---------ccc----ccc-c-ccc--hhH-HHHHHCCEEEEcCCCCcccccccc
Confidence 7999999999999999885544433 000 000 0 001 011 23445553221 12111112
Q ss_pred C----CCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 158 H----DPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 158 ~----~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
. .+++.+ ++-.+++.++++++++++| |+.+|+|++..
T Consensus 148 ~g~~~~~Dftn-p~a~~Ww~~~~~~~~~~~G-idg~w~D~~E~ 188 (340)
T cd06597 148 FPDSLMLDFTN-PEAAQWWMEKRRYLVDELG-IDGFKTDGGEH 188 (340)
T ss_pred CCCceeecCCC-HHHHHHHHHHHHHHHHhcC-CcEEEecCCCc
Confidence 1 123332 3455788999999999999 79999998743
No 61
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.59 E-value=22 Score=43.24 Aligned_cols=137 Identities=18% Similarity=0.252 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCcEEEEEee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---C-CCC-
Q 011170 84 ANQWVNTAAEAGVSLMILTAK--HHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---S-PWD- 156 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaK--HHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S-~wD- 156 (492)
+++.++-+|+.|...|-|+-- |-.+ .-|-=..++|-...+-| |.-|=+++|+++|+++||+|.+=. + +.|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~-~swGY~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFG-GSWGYQVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCC-CCCCCCccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 456678899999999877665 4322 23433334543222322 234668999999999999998632 1 011
Q ss_pred C-------------------CCCCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCCC--------------
Q 011170 157 R-------------------HDPRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS-------------- 197 (492)
Q Consensus 157 ~-------------------~~~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~-------------- 197 (492)
| +++.+|. ..+-.+|+..-+.-.++.|+ ||++=||.....
T Consensus 845 ~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh-iDGfR~Dav~~mly~Dysr~~g~w~p 923 (1224)
T PRK14705 845 WALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH-IDGLRVDAVASMLYLDYSREEGQWRP 923 (1224)
T ss_pred hhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC-CCcEEEeehhhhhhcccccccccccc
Confidence 1 0111221 12334677788888899999 688888864210
Q ss_pred CC--CC----ccccHHHHHHHHHhhCCCeeEec
Q 011170 198 NA--PN----MSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 198 ~~--~~----~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
+. .+ ..-.+.++.+.|++..|++++..
T Consensus 924 n~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IA 956 (1224)
T PRK14705 924 NRFGGRENLEAISFLQEVNATVYKTHPGAVMIA 956 (1224)
T ss_pred cccCCccChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 00 00 01134667788999999988653
No 62
>PLN02849 beta-glucosidase
Probab=77.31 E-value=25 Score=38.70 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH---DPRY 162 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~y 162 (492)
+=++++|++|++..=+.--=- -+.|......|- -.-|.-.+++++|+++||++-+-+..||-- ...|
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWs---RI~P~G~g~vN~-------~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~y 152 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWS---RLIPNGRGSVNP-------KGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDY 152 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHH---hcCcCCCCCCCH-------HHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhc
Confidence 447899999998653321100 011211111111 115788999999999999999999998832 1224
Q ss_pred CC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 163 GH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 163 g~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
|. ..+..+++..=.+-+.++||+....|+=
T Consensus 153 GGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT 184 (503)
T PLN02849 153 GGWINRRIIKDFTAYADVCFREFGNHVKFWTT 184 (503)
T ss_pred CCcCCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 42 2233344444446667788875556654
No 63
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=76.44 E-value=4 Score=40.26 Aligned_cols=61 Identities=28% Similarity=0.328 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 80 LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 80 ~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
..++|-.+.+.++++|+..+++=|-+-||-.|. +|- .-+-+.+|++.||++||..|+==|.
T Consensus 129 ~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~-----d~~---------~~~~L~~Fv~~ar~~gL~~aLAGSL 189 (235)
T PF04476_consen 129 GSISPLDLPEIAAEAGFDGVMLDTADKDGGSLF-----DHL---------SEEELAEFVAQARAHGLMCALAGSL 189 (235)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecccCCCCchh-----hcC---------CHHHHHHHHHHHHHccchhhccccC
Confidence 457999999999999999999999999998874 331 1488999999999999999987664
No 64
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.94 E-value=27 Score=39.28 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---C------
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEH-SVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL---S------ 153 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~-~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~---S------ 153 (492)
..+-.+-+|+.|+..|-|+--+... .-+.=.+++| .| -|.- |..+-.++|+++|+++|||+.+=. |
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~-s~hgYd~~Dy~~i--Dp~~-Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~ 256 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAP-SVHKYDTEDYRHV--DPQL-GGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP 256 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCC-CCCCcCccccccc--Cccc-CCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH
Confidence 3455788999999999999765421 0111112333 22 2322 335789999999999999987622 1
Q ss_pred ------------------C-CCCC---C-CC---CC---C-------CchhhHHHHH----HHHHHHhc-cCCceeEEec
Q 011170 154 ------------------P-WDRH---D-PR---YG---H-------DLQYNEYYLA----QLQELLTR-YGDVREIWFD 192 (492)
Q Consensus 154 ------------------~-wD~~---~-~~---yg---~-------~~~y~~~~~~----Ql~EL~t~-YG~i~~lWfD 192 (492)
+ .||. . .. +. . .++..+|+.+ .++-.+.. || ||++=+|
T Consensus 257 ~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~g-iDG~RlD 335 (598)
T PRK10785 257 WFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYN-IDGWRLD 335 (598)
T ss_pred HHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCC-CcEEEEe
Confidence 1 1121 0 00 10 0 1244455553 45556665 88 6999999
Q ss_pred CCCCCCCC----CccccHHHHHHHHHhhCCCeeEec
Q 011170 193 GAKGSNAP----NMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 193 g~~~~~~~----~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
.+...+.. ...-.+.++.+.+++..|++++..
T Consensus 336 va~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~lig 371 (598)
T PRK10785 336 VVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLG 371 (598)
T ss_pred cHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEE
Confidence 77432110 011246778889999999998764
No 65
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=75.80 E-value=9 Score=36.38 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC-CCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP-WDRHDP 160 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~-wD~~~~ 160 (492)
.+.+.| +.+|++|++++++=+-. | +.| .+ .-...-.+.||++||++|+|+=. .. ..
T Consensus 13 i~~~dw-~~vk~~Gi~faiikate--G--------~~~-------~D---~~~~~n~~~A~~aGl~vG~Yhf~~~~-~~- 69 (192)
T cd06522 13 MSVADY-NKLKNYGVKAVIVKLTE--G--------TTY-------RN---PYAASQIANAKAAGLKVSAYHYAHYT-SA- 69 (192)
T ss_pred ccHHHH-HHHHHcCCCEEEEEEcC--C--------CCc-------cC---hHHHHHHHHHHHCCCeeEEEEEEecC-Ch-
Confidence 345577 67889999999998842 2 222 11 22467789999999999999632 11 00
Q ss_pred CCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCC-CeeEe
Q 011170 161 RYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQS-SINIF 223 (492)
Q Consensus 161 ~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP-~~vi~ 223 (492)
.+...-.+++..+++..- +.+-..+++|--.........-...++.+.|++.-- ..+|.
T Consensus 70 --~~a~~eA~~f~~~~~~~~--~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY 129 (192)
T cd06522 70 --ADAQAEARYFANTAKSLG--LSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVY 129 (192)
T ss_pred --HHHHHHHHHHHHHHHHcC--CCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEE
Confidence 001122455656654321 111124678854322111111124567777776532 44444
No 66
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.63 E-value=24 Score=35.86 Aligned_cols=108 Identities=21% Similarity=0.361 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEeee--cC-Ccc-cCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---
Q 011170 83 DANQWVNTAAEAGVSLMILTAKH--HD-GFC-LWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW--- 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKH--HD-GF~-lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w--- 155 (492)
+..+.|+.+++.|...=++..-. |+ +.. -....+.+|+....-|. |+ ++|++.+++.|+|+.+...|.
T Consensus 26 ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FP----dp-~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 26 EYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFP----DP-EKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCC----CH-HHHHHHHHHCCCEEEEEeCCCccc
Confidence 56889999999999988887742 21 100 00123345554433332 53 789999999999999988763
Q ss_pred CCCCCCCC--------------------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 156 DRHDPRYG--------------------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 156 D~~~~~yg--------------------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
+-+.+.|. ..+++.+.+..++.+.+..+| |+.+|.|.+.+
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~ 160 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQG 160 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCC
Confidence 21111110 013555667788888888888 69999997543
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.32 E-value=6 Score=36.76 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~y 162 (492)
.....+++|+..|++++++-.-. +..++.....-.... -.+-++++++.++++|+++.+...+.......+
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 142 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWER------LAENLRELAEIAEEYGVRIALENHPGPFSETPF 142 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHH------HHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEES
T ss_pred HHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHH------HHHHHHHHHhhhhhhcceEEEecccCccccchh
Confidence 35789999999999998886332 111111111111111 146889999999999999999988755432211
Q ss_pred CCCchhhHHHHHHHHHHHhccCC-ceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEe
Q 011170 163 GHDLQYNEYYLAQLQELLTRYGD-VREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 163 g~~~~y~~~~~~Ql~EL~t~YG~-i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 223 (492)
. ..++.+++...+. -..+.||-+.-... -..+.+.++++.|.+..+
T Consensus 143 ------~---~~~~~~~l~~~~~~~~~i~~D~~h~~~~------~~~~~~~i~~~~~~i~~v 189 (213)
T PF01261_consen 143 ------S---VEEIYRLLEEVDSPNVGICFDTGHLIMA------GEDPDEAIKRLAPRIKHV 189 (213)
T ss_dssp ------S---HHHHHHHHHHHTTTTEEEEEEHHHHHHT------THHHHHHHHHHHHGEEEE
T ss_pred ------h---HHHHHHHHhhcCCCcceEEEehHHHHHc------CCCHHHHHHHhhcceeEE
Confidence 1 4777888888874 36788885421100 123445666666665543
No 68
>PLN03231 putative alpha-galactosidase; Provisional
Probab=72.90 E-value=21 Score=37.53 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCC------CCCCCCCC----c---------------------------hh-hHHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDR------HDPRYGHD----L---------------------------QY-NEYYL 173 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~------~~~~yg~~----~---------------------------~y-~~~~~ 173 (492)
+=++.|++-++..|||||+|.++.-. +.|..|.. . .| .+-|.
T Consensus 86 ~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~ 165 (357)
T PLN03231 86 KGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFI 165 (357)
T ss_pred cCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHH
Confidence 45899999999999999999876321 11211100 0 01 13356
Q ss_pred HHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 174 AQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 174 ~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
+++-++...+| ||.|=.|.+.+.... ..-.+.++.+.|++---.++
T Consensus 166 ~~~a~~fA~WG-VDylK~D~c~~~~~~-~~~~y~~m~~AL~~tGRpIv 211 (357)
T PLN03231 166 QSLYDQYASWG-IDFIKHDCVFGAENP-QLDEILTVSKAIRNSGRPMI 211 (357)
T ss_pred HHHHHHHHHhC-CCEEeecccCCCCcc-cHHHHHHHHHHHHHhCCCeE
Confidence 88888888899 588888866443211 22245667777766543344
No 69
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=72.47 E-value=22 Score=36.61 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-CC
Q 011170 83 DANQWVNTAAEAGVSLMILTAK--HHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDR-HD 159 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaK--HHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~-~~ 159 (492)
+..+.++.+++.|.-.=++..- |.++.. | .+|+....-|. | .+++++.++++|+|+.++..|.=. ..
T Consensus 25 ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~-~----~~f~~d~~~FP----d-p~~mi~~L~~~G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 25 ELLDVAKEYRKRGIPLDVIVQDWFYWPKQG-W----GEWKFDPERFP----D-PKAMVRELHEMNAELMISIWPTFGPET 94 (319)
T ss_pred HHHHHHHHHHHhCCCccEEEEechhhcCCC-c----eeEEEChhhCC----C-HHHHHHHHHHCCCEEEEEecCCcCCCC
Confidence 4578888888888777666443 222211 1 35554433232 4 479999999999999998765210 00
Q ss_pred CC----------------------C-C-------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 160 PR----------------------Y-G-------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 160 ~~----------------------y-g-------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
+. + | ..++-.+.+..++++.+..+| |+.+|+|++.+
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~Ep 160 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKG-VDAWWLDAAEP 160 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCC-CcEEEecCCCC
Confidence 00 0 0 013445677788888777888 59999999853
No 70
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.14 E-value=39 Score=35.39 Aligned_cols=175 Identities=19% Similarity=0.266 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCHhhHhhhcCceEEEEEecccccCCCCCCCCCCCCCCCCCCCCC
Q 011170 4 LCCFVCLITILFQLTNLASSKRQQVPTPPLPLSPLPSFSQLKWQQRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLD 83 (492)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~q~~w~~~kfG~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD 83 (492)
++++++++++..+.+..|.. ....-..|..-.|.. |+=.|. -+-..++.-+|..- .....| .++|
T Consensus 2 ~~~~~~~~~~~~~~~~~c~~---~~~~~~~p~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~-tti~~~--~~~~ 66 (358)
T cd02875 2 IILLILLILLAISKSYECPC---IEPELCEPIEIGPRF--------EFLVFS-VNSTNYPNYDWSKV-TTIAIF--GDID 66 (358)
T ss_pred chHHHHHHHHHHHhcCCCCC---CCHhhCCCccCCCce--------EEEEEE-eCCCcCcccccccc-eEEEec--CCCC
Confidence 45555666666666566665 112222222222222 333333 12223345566542 233455 4566
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYG 163 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg 163 (492)
++.+..|++.|.|=+ +. + +|. .....+| ..+.-++..+++.++++|+. |+ ..||..|...
T Consensus 67 -~~~~~~A~~~~v~v~-~~--~--~~~--------~~~l~~~--~~R~~fi~siv~~~~~~gfD-GI---dIDwE~p~~~ 126 (358)
T cd02875 67 -DELLCYAHSKGVRLV-LK--G--DVP--------LEQISNP--TYRTQWIQQKVELAKSQFMD-GI---NIDIEQPITK 126 (358)
T ss_pred -HHHHHHHHHcCCEEE-EE--C--ccC--------HHHcCCH--HHHHHHHHHHHHHHHHhCCC-eE---EEcccCCCCC
Confidence 477789999999944 33 1 111 1112222 12345999999999999843 22 1477766532
Q ss_pred CCchhhHH--HHHHHHHHHhccCCceeEEecCCCCCCCC-CccccHHHHHHHH
Q 011170 164 HDLQYNEY--YLAQLQELLTRYGDVREIWFDGAKGSNAP-NMSYYFTDWFAMV 213 (492)
Q Consensus 164 ~~~~y~~~--~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~-~~~~~~~~~~~~i 213 (492)
....+..| ++.+|++-+.+-|+-..|-++-...+... ...|++.++-+.+
T Consensus 127 ~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~v 179 (358)
T cd02875 127 GSPEYYALTELVKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGIADAS 179 (358)
T ss_pred CcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHHHhhC
Confidence 22223222 12344443433333235666544322111 1125665554444
No 71
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.04 E-value=21 Score=36.65 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccC-CCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-CCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLW-PSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDR-HDPR 161 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lW-pS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~-~~~~ 161 (492)
..+.|+.+++.|.-.=++.-- +|+.-. ..+..+|+....-|. | .++|++..++.|+|+.++..|.-- ..+.
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld--~~~~~~~~~~~~~f~~d~~~FP----d-p~~mi~~L~~~g~k~~~~i~P~i~~~~~~ 103 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLS--SGYTSIEGGKRYVFNWNKDRFP----D-PAAFVAKFHERGIRLAPNIKPGLLQDHPR 103 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEe--ccccccCCCceeeeecCcccCC----C-HHHHHHHHHHCCCEEEEEeCCcccCCCHH
Confidence 567888999999988777532 122111 112223333221121 3 569999999999999998765210 0000
Q ss_pred -------------------C------C-------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 162 -------------------Y------G-------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 162 -------------------y------g-------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
+ | ..++-.+++.+++++.+...| |+.+|+|++..
T Consensus 104 y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~ 169 (317)
T cd06599 104 YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEY 169 (317)
T ss_pred HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCC
Confidence 0 0 012445788899988888787 69999998743
No 72
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=72.01 E-value=28 Score=36.08 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAK--HHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP 160 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaK--HHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~ 160 (492)
+..+.|+.+++.|.-.=++..- +.+++ .+|+....-|. | .+++++.+++.|+|+.++..|.--.++
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~~~~~~-------~~f~~d~~~fP----d-p~~m~~~l~~~g~~~~~~~~P~v~~~~ 92 (339)
T cd06604 25 EVREIADEFRERDIPCDAIYLDIDYMDGY-------RVFTWDKERFP----D-PKELIKELHEQGFKVVTIIDPGVKVDP 92 (339)
T ss_pred HHHHHHHHHHHhCCCcceEEECchhhCCC-------CceeeccccCC----C-HHHHHHHHHHCCCEEEEEEeCceeCCC
Confidence 4567888889999877666553 33343 33332222121 3 489999999999999999876321111
Q ss_pred CC---------------------------CC-------CchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 161 RY---------------------------GH-------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 161 ~y---------------------------g~-------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
.| |. .++-.+++.+++++++ .+| |+.+|+|++.+
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~Ep 160 (339)
T cd06604 93 GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMNEP 160 (339)
T ss_pred CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCCCc
Confidence 00 00 1233467888889887 567 69999998753
No 73
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=71.46 E-value=11 Score=32.65 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCcEEEEEeeec
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH 106 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH 106 (492)
++.++-|.++||+|..++.-|-
T Consensus 67 ~~La~KAda~GA~yYrIi~~~e 88 (104)
T PRK14864 67 REIQAKANAAGADYYVIVMVDE 88 (104)
T ss_pred HHHHHHHHHcCCCEEEEEEccc
Confidence 5789999999999999999864
No 74
>PRK14706 glycogen branching enzyme; Provisional
Probab=71.22 E-value=49 Score=37.62 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE---eC-CCCC--
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY---LS-PWDR-- 157 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y---~S-~wD~-- 157 (492)
+..++-+|+.|...|-|+---- .+-.-|-=..++|-...+-+ |..+=+++|+++|+++||++.+= -+ .+|.
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~--g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~ 248 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRL--GTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG 248 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCcchhh
Confidence 4555678999999987765421 11123433444553222222 33577999999999999999852 11 1110
Q ss_pred ------------C------CCCCCC------CchhhHHHHHHHHHHHhccCCceeEEecCCCCC---C-CC---------
Q 011170 158 ------------H------DPRYGH------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS---N-AP--------- 200 (492)
Q Consensus 158 ------------~------~~~yg~------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~---~-~~--------- 200 (492)
. +..++. .++-.+|+..-++-.++.|+ ||++=||..... + ..
T Consensus 249 l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~-iDG~R~Dav~~~ly~d~~~~~~~~~~~g 327 (639)
T PRK14706 249 LAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH-VDGLRVDAVASMLYLDFSRTEWVPNIHG 327 (639)
T ss_pred hhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeehheeecccCcccccccccC
Confidence 0 111111 12445677778888888999 699999863221 0 00
Q ss_pred ---C-ccc-cHHHHHHHHHhhCCCeeEec
Q 011170 201 ---N-MSY-YFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 201 ---~-~~~-~~~~~~~~i~~~qP~~vi~~ 224 (492)
. ... .+.++-+.|++..|++++..
T Consensus 328 g~~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 328 GRENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 0 011 34566678999999987653
No 75
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=70.96 E-value=40 Score=31.91 Aligned_cols=111 Identities=18% Similarity=0.315 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHD 165 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~ 165 (492)
.|- .+|++|++++++-+.--.|+ + + --..+-.+.|+++||++|+|+-+--. .+.+.
T Consensus 14 ~w~-~vk~~g~~fv~ikateg~~~-----------~------D---~~f~~n~~~A~~aGl~~G~Yhf~~~~---~~~~~ 69 (196)
T cd06416 14 TFQ-CLKNNGYSFAIIRAYRSNGS-----------F------D---PNSVTNIKNARAAGLSTDVYFFPCIN---CCGSA 69 (196)
T ss_pred hhh-HHHhCCceEEEEEEEccCCc-----------c------C---hHHHHHHHHHHHcCCccceEEEecCC---CCCCH
Confidence 343 45678999999987432221 0 1 22456678999999999999753110 01122
Q ss_pred chhhHHHHHHHHHHHhccCC-ceeEEecCCCCC-----CCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 166 LQYNEYYLAQLQELLTRYGD-VREIWFDGAKGS-----NAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 166 ~~y~~~~~~Ql~EL~t~YG~-i~~lWfDg~~~~-----~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
..-.++++.+++- |+- ...+|+|--... +.....-...++.+.+++..-..+|..
T Consensus 70 ~~Qa~~f~~~~~~----~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 70 AGQVQTFLQYLKA----NGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred HHHHHHHHHHHHh----CCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 2333444444433 321 235789854321 000011134566677766544445543
No 76
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=70.57 E-value=9.5 Score=36.24 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=36.6
Q ss_pred CHHHH-HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 83 DANQW-VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 83 D~dqW-~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
||+.+ ++.++++||.++++-+- + + ..-+.++.+.|+++|+++++-++
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~-----~--------------~-----~~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGV-----A--------------D-----DATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEecc-----C--------------C-----HHHHHHHHHHHHHcCCEEEEEec
Confidence 78888 99999999999885321 0 0 13468899999999999999853
No 77
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=69.22 E-value=21 Score=35.38 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCC---CchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCC------
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGH---DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPN------ 201 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~---~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~------ 201 (492)
.+.+-++++.|+++||++-.....|....|.+-. ..+..+.+.+.+++++++|+.-... +|-.+......
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~-wdV~NE~~~~~~~~~~~ 93 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYA-WDVVNEALHDNGSGLRR 93 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceE-EEEeeecccCCCccccc
Confidence 4667889999999999993333345433344332 1234566788889999999862111 34332211100
Q ss_pred ccc-------cHHHHHHHHHhhCCCeeEe
Q 011170 202 MSY-------YFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 202 ~~~-------~~~~~~~~i~~~qP~~vi~ 223 (492)
..| .....++.+|+..|++.++
T Consensus 94 ~~w~~~~G~~~i~~af~~ar~~~P~a~l~ 122 (254)
T smart00633 94 SVWYQILGEDYIEKAFRYAREADPDAKLF 122 (254)
T ss_pred chHHHhcChHHHHHHHHHHHHhCCCCEEE
Confidence 011 2456788999999998654
No 78
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.05 E-value=9.5 Score=37.69 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
+.+++.++++|++.+++.--| . +-..++.+.||++||+.++.++|
T Consensus 94 ~~fi~~~~~aG~~giiipDl~--------------------~-----ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLP--------------------P-----EEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCC--------------------H-----HHHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999999985211 1 34678999999999999999997
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=67.15 E-value=13 Score=38.50 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC---------
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP--------- 154 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~--------- 154 (492)
-++.++++++.|...+|+.-|--+|.-.|+|+...-...... +. .-.=+++|++.|+++||-+..-...
T Consensus 15 ~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~-~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~ 92 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KP-YIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEA 92 (316)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cc-cccCHHHHHHHHHHCCCEEEEEEEEecChHHhhh
Confidence 368899999999999999999999999999987654321110 11 1123789999999999988776542
Q ss_pred -CCCCC-----CCCC--------C--CchhhHHHHHHHHHHHhccCCceeEEecCC
Q 011170 155 -WDRHD-----PRYG--------H--DLQYNEYYLAQLQELLTRYGDVREIWFDGA 194 (492)
Q Consensus 155 -wD~~~-----~~yg--------~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~ 194 (492)
.||.- ..|. + ..+--+|..+-.+|+. +.| ++++=||-.
T Consensus 93 ~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~G-FdEIqfDYI 146 (316)
T PF13200_consen 93 HPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLG-FDEIQFDYI 146 (316)
T ss_pred ChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcC-CCEEEeeee
Confidence 11110 0011 1 1234467777667766 447 488888854
No 80
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=67.05 E-value=5 Score=39.65 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
++-+|+.|+..|.|+--+..+..-|.=..++|.... |- -|..+=+++|+++|+++||++.+=
T Consensus 10 Ldyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~-~Gt~~d~~~Lv~~~h~~gi~VilD 71 (316)
T PF00128_consen 10 LDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-PR-FGTMEDFKELVDAAHKRGIKVILD 71 (316)
T ss_dssp HHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-TT-TBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHcCCCceecccccccccccccccceeeeccc-cc-cchhhhhhhhhhccccccceEEEe
Confidence 567899999999999877754422222234442222 22 233567999999999999999883
No 81
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=66.04 E-value=14 Score=35.09 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.4
Q ss_pred HHHH---HHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 87 WVNT---AAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 87 W~~~---ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
|.++ +|++|++++++-+-. | +.| .+ .-..+-.+.|+++||++|+|+
T Consensus 14 ~~~~~~~~k~~gi~fviikate--G--------~~~-------~D---~~~~~n~~~a~~aGl~~G~Yh 62 (194)
T cd06524 14 WQKVKAKVKDSPVAFVFIKATE--G--------VDI-------VD---PDFPTNWEGAKEAGIIRGAYH 62 (194)
T ss_pred hhhhhhhhhhcCccEEEEEecC--C--------CCc-------cC---hHHHHHHHHHHHcCCceEEEE
Confidence 6555 889999999999833 2 222 11 345778899999999999995
No 82
>PRK12677 xylose isomerase; Provisional
Probab=65.98 E-value=64 Score=34.26 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
.+|+++.++.++++|++.|-| |.+...-|+..... +...++++.++++++||++...-+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVEl---h~~~l~p~~~~~~~-----------~~~~~~~lk~~l~~~GL~v~~v~~ 88 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTF---HDDDLVPFGATDAE-----------RDRIIKRFKKALDETGLVVPMVTT 88 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEe---cccccCCCCCChhh-----------hHHHHHHHHHHHHHcCCeeEEEec
Confidence 479999999999999999977 55554333322110 124799999999999999886543
No 83
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.83 E-value=14 Score=36.90 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
+..+.+++.++++|+..+++. | -| -+-..++.++||++||++++-.+|
T Consensus 102 ~G~e~f~~~~~~aGvdgviip----D----------------lp-----~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVA----D----------------LP-----LEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEEC----C----------------CC-----hHHHHHHHHHHHHCCCcEEEEECC
Confidence 344999999999999999885 1 12 145789999999999999999987
No 84
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=65.80 E-value=16 Score=34.19 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=54.6
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe-CCCCCCCCCCCCC
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL-SPWDRHDPRYGHD 165 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~-S~wD~~~~~yg~~ 165 (492)
|...++++|++++++-+-. | +.| .+ --...-.++||++||++|+|+ +... .. .+.
T Consensus 14 ~~~~~~~~g~~fviikate--G--------~~~-------~D---~~f~~n~~~a~~aGl~vG~Yhf~~~~-~~---~~a 69 (177)
T cd06523 14 WDYDTLSKQLDLVIIRVQY--G--------SNY-------VD---LKYKNNIKEFKKRGIPFGVYAFARGT-ST---ADA 69 (177)
T ss_pred HHHHHHhCCCCEEEEEEeC--C--------Ccc-------cC---HHHHHHHHHHHHcCCCeEEEEEeccC-CH---HHH
Confidence 5233567999999999965 2 111 11 225667899999999999995 4210 00 001
Q ss_pred chhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhh
Q 011170 166 LQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKEL 216 (492)
Q Consensus 166 ~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~ 216 (492)
..-.+++..++.. .+ ..+|+|--.... ....-...++.+.|++.
T Consensus 70 ~~eA~~f~~~~~~-----~~-~~~~lD~E~~~~-~~~~~~~~~f~~~v~~~ 113 (177)
T cd06523 70 KAEARDFYNRANK-----KP-TFYVLDVEVTSM-SDMNAGVQAFISELRRL 113 (177)
T ss_pred HHHHHHHHHHhcC-----CC-ceEEEeeccCCc-chHHHHHHHHHHHHHHc
Confidence 1223455454433 34 358899653221 11112345667777664
No 85
>PRK02227 hypothetical protein; Provisional
Probab=64.18 E-value=8 Score=38.34 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
..+|..+.+.++++|+..+++=|---||-.|+ +| . .-+-+++|++.||++||..|+==|.
T Consensus 130 ~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lf-----d~--l-------~~~~L~~Fv~~ar~~Gl~~gLAGSL 189 (238)
T PRK02227 130 SVSPLSLPAIAADAGFDGAMLDTAIKDGKSLF-----DH--M-------DEEELAEFVAEARSHGLMSALAGSL 189 (238)
T ss_pred CCChHHHHHHHHHcCCCEEEEecccCCCcchH-----hh--C-------CHHHHHHHHHHHHHcccHhHhcccC
Confidence 45899999999999999999988888887773 32 1 1488999999999999999987664
No 86
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=64.02 E-value=17 Score=34.58 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 91 AAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 91 ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
+|++|++++|+=+-+-.+ | .+ .-..+-.+.||++||++|+|+
T Consensus 17 ~~~~g~~fviiKateG~~----------~-------~d---~~~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 17 YGQAGAKFAIVKISEGTN----------Y-------VN---PKASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred HHhCCCcEEEEEEcCCCc----------c-------CC---ccHHHHHHHHHHCCCeeEEEE
Confidence 789999999998854322 2 11 135778899999999999997
No 87
>PRK03705 glycogen debranching enzyme; Provisional
Probab=63.36 E-value=94 Score=35.53 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHHHHcCCcEEEEEeeecC---------Cc-ccCCCCCCCCccccCCCCCCC----CChHHHHHHHHHHcCCeeEE--
Q 011170 87 WVNTAAEAGVSLMILTAKHHD---------GF-CLWPSKFTEHSVAHSPWKHGR----GDVVQELVNAAKARGVDVGL-- 150 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHD---------GF-~lWpS~~t~~~v~~sp~~~~k----rDiV~El~~Acrk~Glk~G~-- 150 (492)
-++-+|+.|...|-|+--+.- |. ..|-=...+|..-...| +.. .+=+++|+++|+++||++.+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 367889999999988766531 11 11322223442222222 221 13689999999999999966
Q ss_pred -EeCCCC-------------------CCCC--CC------CC-----CchhhHHHHHHHHHHHhccCCceeEEecCCCCC
Q 011170 151 -YLSPWD-------------------RHDP--RY------GH-----DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS 197 (492)
Q Consensus 151 -Y~S~wD-------------------~~~~--~y------g~-----~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~ 197 (492)
|-|.-+ |..+ .| ++ .+.-.+|+.+-++-.++.|| ||++=||-+...
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g-VDGFRfD~a~~l 341 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH-VDGFRFDLATVL 341 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC-CCEEEEEcHhhh
Confidence 322111 0000 01 11 12345778888888889999 699999976433
Q ss_pred CCCCcccc-HHHHHHHHHh--hCCCeeEec
Q 011170 198 NAPNMSYY-FTDWFAMVKE--LQSSINIFS 224 (492)
Q Consensus 198 ~~~~~~~~-~~~~~~~i~~--~qP~~vi~~ 224 (492)
+.. ..+. -..+++.|++ +-|++.+..
T Consensus 342 ~~~-~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 342 GRT-PEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CcC-cccchhhHHHHHHhhCccccceEEEE
Confidence 211 1111 1234556654 446776653
No 88
>PTZ00445 p36-lilke protein; Provisional
Probab=62.64 E-value=17 Score=35.47 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCcEEEE------EeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-EeCC
Q 011170 84 ANQWVNTAAEAGVSLMIL------TAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL-YLSP 154 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvl------TaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~-Y~S~ 154 (492)
++..++.+++.|.|-|++ +++|-.|+.-... .+-.+..+. +.=+++|.++++++||++.+ -||.
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~--~~~~~~~~~-----tpefk~~~~~l~~~~I~v~VVTfSd 101 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDN--DDIRVLTSV-----TPDFKILGKRLKNSNIKISVVTFSD 101 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCc--chhhhhccC-----CHHHHHHHHHHHHCCCeEEEEEccc
Confidence 677899999999999974 8999999544331 121222221 34488899999999999976 5663
No 89
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=62.57 E-value=19 Score=34.10 Aligned_cols=45 Identities=29% Similarity=0.494 Sum_probs=32.3
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
|.+ +|++|.+++++=+-. | +.| .+ +-..+-.+.||++||++|+|+
T Consensus 17 ~~~-vk~~gi~fviiKate--G--------~~~-------~D---~~~~~~~~~a~~~Gl~vG~Yh 61 (191)
T cd06413 17 WAR-VRAQGVSFAYIKATE--G--------GDH-------VD---KRFAENWRGARAAGLPRGAYH 61 (191)
T ss_pred HHH-HHhCCCcEEEEEEcC--C--------CCc-------cC---HHHHHHHHHHHHcCCceEEEE
Confidence 444 488999999998742 2 112 11 445667889999999999994
No 90
>PLN03244 alpha-amylase; Provisional
Probab=61.40 E-value=38 Score=39.37 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHcCCeeEEEe-----C--------CCCCC------------CCCCCC------CchhhHHHHHHHHH
Q 011170 130 RGDVVQELVNAAKARGVDVGLYL-----S--------PWDRH------------DPRYGH------DLQYNEYYLAQLQE 178 (492)
Q Consensus 130 krDiV~El~~Acrk~Glk~G~Y~-----S--------~wD~~------------~~~yg~------~~~y~~~~~~Ql~E 178 (492)
.-|=++.|+++|+++||+|.+=. + .+|.. ++.+|. ..+-.+|++.-++-
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 35778999999999999997621 1 12211 111221 12345788888888
Q ss_pred HHhccCCceeEEecCC
Q 011170 179 LLTRYGDVREIWFDGA 194 (492)
Q Consensus 179 L~t~YG~i~~lWfDg~ 194 (492)
.++.|+ ||++=||+.
T Consensus 519 WleEyh-IDGFRfDaV 533 (872)
T PLN03244 519 WITEYQ-IDGFQFHSL 533 (872)
T ss_pred HHHHhC-cCcceeecc
Confidence 999999 689999865
No 91
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=61.28 E-value=12 Score=37.18 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCCccccCCCC---CceeeecC---CCC--CCCCceEEEecccCCceeeeEEEEEeecCCCceeeEEEEEE
Q 011170 367 GGFGPENVLDDDH---LRTYWAPR---DGD--GISDDHWIEIRAADEGLRFNVIRIQEAIGLGQRIKRHEIFV 431 (492)
Q Consensus 367 ~~~~~~~~~Dg~~---~~TyWa~~---~~~--~~~~~~wi~l~~~~~~~~fn~v~l~E~i~~GQRV~~~~v~~ 431 (492)
..+.+++++|++. . |+|.++ .+. ...+.+ |+|++ ...|..|+|+=. +-|=.+..||-
T Consensus 53 ~~Hp~~~~~D~~~~~~~-TwWQS~~~~~g~~~~~Vtit-LdL~~---~f~v~~v~l~F~---spRP~~miier 117 (237)
T PF00055_consen 53 RSHPPSYLTDSHNPNNS-TWWQSETLQNGVQYENVTIT-LDLGK---EFEVTYVILQFC---SPRPAAMIIER 117 (237)
T ss_dssp T---GGGGCSSSCTTB----EEB--STTTTSTT-EEEE-EEEEE---EEEEEEEEEEES---S---SEEEEEE
T ss_pred cccChhhcccccccccC-ceecCCccCCCCcCcceEEE-Ecccc---eEEEEEEEEEEc---CCCCCeEEEEE
Confidence 3678899999877 6 999988 444 111123 77776 567777777654 44545555554
No 92
>PRK10426 alpha-glucosidase; Provisional
Probab=61.16 E-value=36 Score=38.69 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee-----E
Q 011170 76 IFNPLGL-DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV-----G 149 (492)
Q Consensus 76 ~F~p~~f-D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~-----G 149 (492)
.|++++| ||++.++.+++.|+|.++.+--|-. .+ .++ -+.+++.|.-+ .
T Consensus 262 ~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~---------~~------------~~~----y~e~~~~gy~vk~~~g~ 316 (635)
T PRK10426 262 KWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA---------SD------------GDL----CEEAAEKGYLAKDADGG 316 (635)
T ss_pred eEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC---------CC------------CHH----HHHHHHCCcEEECCCCC
Confidence 3466666 7999999999999998887633221 01 122 23344555322 1
Q ss_pred EEeCC-CCC--CCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCC-------C-----ccc---cHHHHHH
Q 011170 150 LYLSP-WDR--HDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAP-------N-----MSY---YFTDWFA 211 (492)
Q Consensus 150 ~Y~S~-wD~--~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~-------~-----~~~---~~~~~~~ 211 (492)
.|.-. |.+ ..+++.+ ++-.+.+.+++++.+..+| |+.+|.|++...+.. . ..| .-...++
T Consensus 317 ~~~~~~~~~~~~~~Dftn-p~ar~Ww~~~~~~~~~~~G-vdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e 394 (635)
T PRK10426 317 DYLVEFGEFYAGVVDLTN-PEAYEWFKEVIKKNMIGLG-CSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYE 394 (635)
T ss_pred EEEeEecCCCceeecCCC-HHHHHHHHHHHHHHHhhcC-CCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHH
Confidence 23221 221 1122322 4556788899988887888 799999986532110 0 001 1123456
Q ss_pred HHHhhCC--CeeEecCCC
Q 011170 212 MVKELQS--SINIFSDAG 227 (492)
Q Consensus 212 ~i~~~qP--~~vi~~~~g 227 (492)
.+++..+ ..+++.+.|
T Consensus 395 ~~~~~~~~~r~f~ltRsg 412 (635)
T PRK10426 395 ALEETGKLGEILFFMRAG 412 (635)
T ss_pred HHHHhcCCCCcEEEEccc
Confidence 6777766 667776643
No 93
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=61.12 E-value=20 Score=34.18 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
|.+ +|+.|+++|++-| |.-+.| .+ +-..+-.+.||++||++|+|+
T Consensus 22 w~~-v~~~gi~Fv~iKA----------TEG~~~-------~D---~~f~~n~~~A~~~Gl~vGaYH 66 (190)
T cd06419 22 FNS-LQSNGISFVYLRA----------TQGASY-------FD---DNFLSNFSRAQGTGLSVGVIH 66 (190)
T ss_pred HHH-HHhCCCeEEEEEe----------ecCCCc-------cC---hhHHHHHHHHHHCCCCEEEEE
Confidence 555 4678999999976 333333 11 345678899999999999994
No 94
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=60.84 E-value=39 Score=35.99 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=67.7
Q ss_pred CCCCCCCCC-----HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 75 EIFNPLGLD-----ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 75 ~~F~p~~fD-----~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
+.||..+.- ..+|++++++.||++-|-- |-+.--|+....-+- .++.++++-| ++++-+-++ +
T Consensus 89 s~wnsvk~GpKrDlvgela~Avr~qGL~FGvy~---s~a~h~W~~~~g~~~--~~d~~dp~y~----~~~~~~~~~---~ 156 (430)
T COG3669 89 SVWNSVKRGPKRDLVGELAKAVREQGLRFGVYL---SGAWHPWDFHSGYYA--DSDEKDPNYY----LAQLQELLS---G 156 (430)
T ss_pred ccccccccCCcccHHHHHHHHHHHcCCeeeEee---ccCcccccccCCccc--cccccCcccc----cccHHHHhc---c
Confidence 345544444 4689999999999998865 444667777765542 2344555555 233322222 2
Q ss_pred EEeCC---CC--CCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCC
Q 011170 150 LYLSP---WD--RHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGA 194 (492)
Q Consensus 150 ~Y~S~---wD--~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~ 194 (492)
-+++. .| |-+...++.+++..++++.+-|++.+|-| +.+-||-.
T Consensus 157 ~~~~~~~~~d~~~~dnaw~~~~~~~~~wl~r~~e~i~~y~P-~~vyFd~w 205 (430)
T COG3669 157 ANYGNAGPFDEVWLDNAWGNGPAKVNYWLARWFELIRRYQP-DLVYFDWW 205 (430)
T ss_pred cccccCCCCcchhhcccccCChHHHHHHHHHHHHHHHhhCC-CeEEecch
Confidence 33332 22 12222334568889999999999999999 89999854
No 95
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=59.64 E-value=18 Score=34.21 Aligned_cols=63 Identities=29% Similarity=0.566 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCcE--EEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC
Q 011170 84 ANQWVNTAAEAGVSL--MILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD 159 (492)
Q Consensus 84 ~dqW~~~ak~AGaky--vvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~ 159 (492)
++..++.++..++++ ++|-....+ +.|.+..+. ..+.+.+|++..+++|.++|+|-|..+|.+
T Consensus 73 a~~f~~~~~~~~~~~~~i~lDiE~~~--~~~~~~~~~-----------~~~~~~~f~~~~~~~G~~~~iYt~~~~w~~ 137 (196)
T cd06416 73 VQTFLQYLKANGIKYGTVWIDIEQNP--CQWSSDVAS-----------NCQFLQELVSAAKALGLKVGIYSSQYDWSQ 137 (196)
T ss_pred HHHHHHHHHhCCCceeEEEEEEecCC--CCCcCCHHH-----------HHHHHHHHHHHHHHhCCeEEEEcCcchhcc
Confidence 566777777777765 456555542 344332111 258999999999999999999999877654
No 96
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=59.32 E-value=1.4e+02 Score=30.81 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHc-CCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhcc----CCceeEEecCCCCCCCCCcccc
Q 011170 131 GDVVQELVNAAKAR-GVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRY----GDVREIWFDGAKGSNAPNMSYY 205 (492)
Q Consensus 131 rDiV~El~~Acrk~-Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~Y----G~i~~lWfDg~~~~~~~~~~~~ 205 (492)
.|++.++.++.-++ |..+-.++-.|-...+.+-....|.+|+.+-++++++.+ |-...+-.+|..
T Consensus 154 td~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~---------- 223 (321)
T cd03309 154 TDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAA---------- 223 (321)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCc----------
Confidence 35566777777767 888776665554443444455689999988888887755 322344555531
Q ss_pred HHHHHHHHHhhCCCeeE
Q 011170 206 FTDWFAMVKELQSSINI 222 (492)
Q Consensus 206 ~~~~~~~i~~~qP~~vi 222 (492)
..+++.+.++..+++-
T Consensus 224 -~~~l~~~~e~g~dvl~ 239 (321)
T cd03309 224 -ASLVPSMAEMGVDSWN 239 (321)
T ss_pred -HHHHHHHHHcCCCEEE
Confidence 2345556666566653
No 97
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=59.16 E-value=23 Score=33.81 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 89 NTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 89 ~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
+.+|++|++++++=+-. | +.| .+ .-..+-.+.||+.||++|+|+=
T Consensus 16 ~~vk~~g~~fviiKate--G--------~~~-------~D---~~~~~n~~~A~~aGl~~G~Yhf 60 (199)
T cd06412 16 SGAAANGARFAYVKATE--G--------TSY-------TN---PRFSSQYNGAYNAGLIRGAYHF 60 (199)
T ss_pred HHHHhCCCeEEEEEEec--C--------CCc-------cC---hhHHHHHHHHHHcCCceEEEEE
Confidence 34678899999998842 2 222 12 2356778899999999999964
No 98
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=58.82 E-value=6 Score=36.54 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.4
Q ss_pred ccceeeccCCCCCCCCCccccCCCCCceeeecCCCCC
Q 011170 355 FVKASSQRAGKGGGFGPENVLDDDHLRTYWAPRDGDG 391 (492)
Q Consensus 355 ~v~ass~~~~~~~~~~~~~~~Dg~~~~TyWa~~~~~~ 391 (492)
..++||...+ +.-..++|+|++ |||++++.+-
T Consensus 31 ~w~~SSfK~g----~p~r~~lddn~d-tyWqsDg~qP 62 (189)
T COG5156 31 EWRLSSFKRG----HPLRELLDDNMD-TYWQSDGVQP 62 (189)
T ss_pred eeeecccccC----CcHHHHhhcchh-hhhccCCCCC
Confidence 3677777653 677789999999 9999987763
No 99
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.73 E-value=67 Score=33.00 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-CC
Q 011170 83 DANQWVNTAAEAGVSLMILTAK--HHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDR-HD 159 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaK--HHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~-~~ 159 (492)
+..+.++.+++.|..-=++..- +++... ...++.+|+....-|. | .++|++.+++.|+|+.++..|.-- ..
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-~~~~~~~f~wd~~~FP----d-p~~mi~~L~~~G~k~~~~v~P~v~~~~ 98 (317)
T cd06598 25 EVDDTIKTLREKDFPLDAAILDLYWFGKDI-DKGHMGNLDWDRKAFP----D-PAGMIADLAKKGVKTIVITEPFVLKNS 98 (317)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhhcCcc-cCCceeeeEeccccCC----C-HHHHHHHHHHcCCcEEEEEcCcccCCc
Confidence 3577888889999887776554 222110 1123334544433332 3 368999999999999999875310 00
Q ss_pred CC--------C-----------------C-------CCchhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 160 PR--------Y-----------------G-------HDLQYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 160 ~~--------y-----------------g-------~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
+. | | ..++-.+++.++++++ ..+| |+.+|+|.+.+
T Consensus 99 ~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep 165 (317)
T cd06598 99 KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEP 165 (317)
T ss_pred hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCc
Confidence 10 1 0 0123357788888887 5567 69999998753
No 100
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=58.63 E-value=18 Score=40.13 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEH-SVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~-~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
+-++-+++.|++.|.|+.-+-.+..-+.=..++| .|. |. -|..+=+++|+++|+++||++.+=
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id--~~-~Gt~~~~~~lv~~ah~~gi~vilD 94 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN--PL-FGTMADFEELVSEAKKRNIKIMLD 94 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC--cc-cCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3457889999999999876543211001011333 232 22 234578999999999999999874
No 101
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.53 E-value=90 Score=38.32 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCC---------cc-cCCCCCCCCccccCCCCC-CCCChHHHHHHHHHHcCCeeEE
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDG---------FC-LWPSKFTEHSVAHSPWKH-GRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDG---------F~-lWpS~~t~~~v~~sp~~~-~krDiV~El~~Acrk~Glk~G~ 150 (492)
++-.+-++-+|+.|...|-|+--|.-. .. .|-=...+|.... |.-+ ...+=+++|+++|+++||++.+
T Consensus 187 l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~d-p~yg~~~~~efk~lV~~~H~~GI~VIL 265 (1221)
T PRK14510 187 LAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPD-PRLAPGGEEEFAQAIKEAQSAGIAVIL 265 (1221)
T ss_pred cCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcC-hhhccCcHHHHHHHHHHHHHCCCEEEE
Confidence 333356778999999999887665311 00 1211223332111 1111 1346799999999999999966
Q ss_pred ---EeCCCCC-------------------CC----CCC------CCC-----chhhHHHHHHHHHHHhccCCceeEEecC
Q 011170 151 ---YLSPWDR-------------------HD----PRY------GHD-----LQYNEYYLAQLQELLTRYGDVREIWFDG 193 (492)
Q Consensus 151 ---Y~S~wD~-------------------~~----~~y------g~~-----~~y~~~~~~Ql~EL~t~YG~i~~lWfDg 193 (492)
|-|.-+. ++ ..| ++. +.-.+++.+-++-.++ || ||++=||-
T Consensus 266 DvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~g-VDGfRfDl 343 (1221)
T PRK14510 266 DVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RG-VDGFRLDL 343 (1221)
T ss_pred EEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hC-CCEEEEec
Confidence 3221100 00 001 111 1223566777777888 98 79999997
Q ss_pred CCCCCCCCccccHHHHHHHHHhhCCCeeE
Q 011170 194 AKGSNAPNMSYYFTDWFAMVKELQSSINI 222 (492)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 222 (492)
+...+.. ..-.+.++...+++..||.++
T Consensus 344 a~~l~r~-~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 344 ADELARE-PDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred hhhhccC-ccchHHHHHHHHHHhCCCcCc
Confidence 6543211 111346778889999999876
No 102
>PRK10658 putative alpha-glucosidase; Provisional
Probab=58.22 E-value=49 Score=37.82 Aligned_cols=123 Identities=17% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE-----
Q 011170 76 IFNPLGL-DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG----- 149 (492)
Q Consensus 76 ~F~p~~f-D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G----- 149 (492)
.|++++| ||++.++.+++.|+|-++.+- |. |.. .- ++.+.+++.|.-+-
T Consensus 318 ~wd~~~FPdp~~mi~~L~~~G~k~~~~i~---------P~------i~~------~s----~~f~e~~~~gy~vk~~~G~ 372 (665)
T PRK10658 318 EWDPRTFPDPEGMLKRLKAKGLKICVWIN---------PY------IAQ------KS----PLFKEGKEKGYLLKRPDGS 372 (665)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEecc---------CC------cCC------Cc----hHHHHHHHCCeEEECCCCC
Confidence 4678888 999999999999999766542 21 100 01 22334445553210
Q ss_pred EEeCCCCCC----CCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCC-------C-----ccc---cHHHHH
Q 011170 150 LYLSPWDRH----DPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAP-------N-----MSY---YFTDWF 210 (492)
Q Consensus 150 ~Y~S~wD~~----~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~-------~-----~~~---~~~~~~ 210 (492)
.|.- ..|. .+++.+ ++-.+.|.+++++|++ +| |+.+|.|.+...+.. . ..| .-...+
T Consensus 373 ~~~~-~~W~g~~~~~Dftn-p~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~ 448 (665)
T PRK10658 373 VWQW-DKWQPGMAIVDFTN-PDACKWYADKLKGLLD-MG-VDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVF 448 (665)
T ss_pred Eeee-eecCCCceeecCCC-HHHHHHHHHHHHHHHh-cC-CcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHH
Confidence 1110 0121 122322 3556788899999876 67 699999976422110 0 011 123456
Q ss_pred HHHHhhCC--CeeEecCCC
Q 011170 211 AMVKELQS--SINIFSDAG 227 (492)
Q Consensus 211 ~~i~~~qP--~~vi~~~~g 227 (492)
+.+++..| ..+++.+.+
T Consensus 449 e~l~~~~~~~r~~i~tRs~ 467 (665)
T PRK10658 449 DVLKETRGEGEAVLFARSA 467 (665)
T ss_pred HHHHHhcCCCceEEEEecc
Confidence 77777665 456776643
No 103
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=58.05 E-value=24 Score=33.13 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=58.3
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCc
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDL 166 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~ 166 (492)
|-+ +|++|++++++-+-. | +.| .+ .-...-.+.|+++||++|+|+=... . .+..
T Consensus 14 ~~~-~k~~gi~fviiKate--G--------~~y-------~D---~~~~~~~~~a~~aGl~~G~Yhy~~~--~---~~a~ 67 (184)
T cd06525 14 FNA-VKDSGVEVVYIKATE--G--------TTF-------VD---SYFNENYNGAKAAGLKVGFYHFLVG--T---SNPE 67 (184)
T ss_pred HHH-HHhCCCeEEEEEecC--C--------Ccc-------cC---HhHHHHHHHHHHCCCceEEEEEeeC--C---CCHH
Confidence 444 467899999998842 1 222 11 3467778999999999999973211 0 1111
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCCCCCC--CccccHHHHHHHHHhh-CCCeeEe
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAP--NMSYYFTDWFAMVKEL-QSSINIF 223 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~--~~~~~~~~~~~~i~~~-qP~~vi~ 223 (492)
.=.+++.++++ .++.-..+|+|--...... ...-...++.+.|+++ .-..+|.
T Consensus 68 ~qA~~f~~~~~----~~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY 123 (184)
T cd06525 68 EQAENFYNTIK----GKKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKLSGLKVGIY 123 (184)
T ss_pred HHHHHHHHhcc----ccCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 22344445544 4443235688854322111 1112345677778775 3334444
No 104
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.47 E-value=21 Score=35.86 Aligned_cols=54 Identities=33% Similarity=0.587 Sum_probs=45.5
Q ss_pred CCCC-CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 76 IFNP-LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 76 ~F~p-~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
-+|| -++..+.+++.++++|++.+++. | -| -|=..++.++|+++||.+-+..+|
T Consensus 97 Y~N~i~~~G~e~f~~~~~~aGvdGviip---------------D-----Lp-----~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 97 YYNPIFQYGVERFAADAAEAGVDGLIIP---------------D-----LP-----PEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred cccHHhhcCHHHHHHHHHHcCCcEEEEC---------------C-----CC-----HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4566 56789999999999999999995 1 22 267889999999999999999987
No 105
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.82 E-value=12 Score=37.24 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYG 163 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg 163 (492)
.++.++++++.|++++++. |+..|.....+-.... -.+-++++++.++++|+++++=..... +.
T Consensus 101 ~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~A~~~GV~i~iE~~~~~-----~~ 164 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRR------FIDGLKESVELASRASVTLAFEIMDTP-----FM 164 (283)
T ss_pred HHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHH------HHHHHHHHHHHHHHhCCEEEEeecCCc-----cc
Confidence 3478899999999999862 4444332211111010 135779999999999999988543211 11
Q ss_pred CCchhhHHHHHHHHHHHhccC-CceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeE
Q 011170 164 HDLQYNEYYLAQLQELLTRYG-DVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINI 222 (492)
Q Consensus 164 ~~~~y~~~~~~Ql~EL~t~YG-~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 222 (492)
.+ ..++.++++..+ |-..+.+|-++..... . + ..+.++.+.+.+..
T Consensus 165 ~~-------~~~~~~ll~~v~~~~lgl~~D~~h~~~~~-~--~---~~~~i~~~~~~i~~ 211 (283)
T PRK13209 165 NS-------ISKALGYAHYLNSPWFQLYPDIGNLSAWD-N--D---VQMELQAGIGHIVA 211 (283)
T ss_pred CC-------HHHHHHHHHHhCCCccceEeccchHHHhc-C--C---HHHHHHhCcCcEEE
Confidence 11 234455665555 3356788865422110 0 1 23456666665543
No 106
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=55.74 E-value=24 Score=32.81 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=59.8
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCc
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDL 166 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~ 166 (492)
| ..+|+.|+++|++=+-.- +.| . -.....-.++||++||++|+|+=..- . .+..
T Consensus 14 ~-~~~~~~g~~fviik~t~G----------~~~-------~---D~~~~~~~~~a~~aGl~~G~Yhy~~~-~----~~a~ 67 (186)
T cd00599 14 W-NAVKAAGIDFVFIKATEG----------TTY-------V---DPKFATNRARARAAGLLVGAYHFARP-C----ANAE 67 (186)
T ss_pred H-HHHHhCCCcEEEEEEeCC----------CCc-------c---ChHHHHHHHHHHHCCCceEEEEEecC-C----CCHH
Confidence 5 445778999999988441 111 1 25567788999999999999964321 0 1111
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCCCCC---CCccccHHHHHHHHHhhC-CCeeEe
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNA---PNMSYYFTDWFAMVKELQ-SSINIF 223 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~---~~~~~~~~~~~~~i~~~q-P~~vi~ 223 (492)
.=.+++.+. +.+|.+-..+|+|--..... ....-...++.+.+++.- -..+|.
T Consensus 68 ~qa~~fi~~----~~~~~~~~~~~lDvE~~~~~~~~~~~~~~~~~f~~~~~~~gg~~~~iY 124 (186)
T cd00599 68 AQADNFVNT----VPRDPGSLPLVLDVEDTGGGCSAAALAAWLNAFLNEVEALTGKKPIIY 124 (186)
T ss_pred HHHHHHHHH----ccCcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCCceEEE
Confidence 112333333 34454446788996433221 111123466777777753 334444
No 107
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=55.54 E-value=36 Score=35.39 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=20.3
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEEeee
Q 011170 76 IFNPLGL-DANQWVNTAAEAGVSLMILTAKH 105 (492)
Q Consensus 76 ~F~p~~f-D~dqW~~~ak~AGakyvvlTaKH 105 (492)
.|++++| ||++.++.+++.|+|.++.+--|
T Consensus 57 t~d~~~FPdp~~mv~~L~~~G~klv~~i~P~ 87 (332)
T cd06601 57 TTNGGGFPNPKEMFDNLHNKGLKCSTNITPV 87 (332)
T ss_pred eecCCCCCCHHHHHHHHHHCCCeEEEEecCc
Confidence 3455555 37888888888888877766433
No 108
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=55.33 E-value=1e+02 Score=31.98 Aligned_cols=102 Identities=10% Similarity=0.116 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC---C
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD---P 160 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~---~ 160 (492)
..+.++.+++.|...=++.-- .+ |-..+.+|+....-|. |. +++++..++.|+|+.++..|.--.+ +
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD--~~---~~~~~~~f~~d~~~FP----dp-~~mi~~L~~~G~k~~~~~~P~v~~~~~~~ 95 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLD--IE---HTDGKRYFTWDKKKFP----DP-EKMQEKLASKGRKLVTIVDPHIKRDDGYY 95 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEC--hH---HhCCCCceEeCcccCC----CH-HHHHHHHHHCCCEEEEEecCceecCCCCH
Confidence 567788888888877666442 11 1123344444332232 44 7799999999999999887631111 1
Q ss_pred CC------------------------CC-------CchhhHHHHHHHHHHHhccC-CceeEEecCCC
Q 011170 161 RY------------------------GH-------DLQYNEYYLAQLQELLTRYG-DVREIWFDGAK 195 (492)
Q Consensus 161 ~y------------------------g~-------~~~y~~~~~~Ql~EL~t~YG-~i~~lWfDg~~ 195 (492)
.| |. .++-.+.+..++++++..++ .++.+|+|...
T Consensus 96 ~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 96 VYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 00 00 12345678899999987653 46899999764
No 109
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=53.11 E-value=33 Score=41.07 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=45.2
Q ss_pred EEEEecccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCC
Q 011170 53 MFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGD 132 (492)
Q Consensus 53 ~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krD 132 (492)
||+|.-+.|-..-- -.-..+++.++.||+.||+.+.|| |++... |
T Consensus 1 mfvhLh~hS~YSll------------dg~~~i~~lv~~A~~~g~~alAlT---------------D~~~m~----G---- 45 (1034)
T PRK07279 1 MFAQLDTKTVYSFM------------DSLIDLEKYVERAKELGYQTIGIM---------------DKDNLY----G---- 45 (1034)
T ss_pred CeeeeecCCCCccc------------cccCCHHHHHHHHHHCCCCEEEEE---------------cCCccc----c----
Confidence 78898887643211 112568999999999999999886 443332 1
Q ss_pred hHHHHHHHHHHcCCeeEE
Q 011170 133 VVQELVNAAKARGVDVGL 150 (492)
Q Consensus 133 iV~El~~Acrk~Glk~G~ 150 (492)
+-||.++|+|+|||+.+
T Consensus 46 -a~~F~~~a~~~gIkPIi 62 (1034)
T PRK07279 46 -AYHFIEGAQKNGLQPIL 62 (1034)
T ss_pred -HHHHHHHHHHcCCcEEE
Confidence 45899999999999854
No 110
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=52.53 E-value=25 Score=33.85 Aligned_cols=52 Identities=19% Similarity=0.544 Sum_probs=35.4
Q ss_pred CCCCccccCCCCCc--eeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecCCCc-------eeeEEEEEE
Q 011170 368 GFGPENVLDDDHLR--TYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIGLGQ-------RIKRHEIFV 431 (492)
Q Consensus 368 ~~~~~~~~Dg~~~~--TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~~GQ-------RV~~~~v~~ 431 (492)
.|-|+|++-+++.+ ++|.++.+.. .+| |.|..|. |-+.|.+|- .+++|+|..
T Consensus 18 ~y~P~NIlvd~P~dqsSRWss~~~~~---~QyiiLkL~~pa---------iV~sItFGKy~K~HvCNlK~fkv~g 80 (199)
T PF06588_consen 18 NYHPENILVDKPNDQSSRWSSSSNSP---PQYIILKLESPA---------IVKSITFGKYEKPHVCNLKKFKVYG 80 (199)
T ss_pred ccChhheeecCCCCccccccCCCCCC---CcEEEEEcCCCe---------EEEEEeccccccCccccceeeEEec
Confidence 79999998664433 9999886554 566 5555542 445566662 379999975
No 111
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=51.76 E-value=33 Score=31.91 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred HHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchh
Q 011170 89 NTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQY 168 (492)
Q Consensus 89 ~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y 168 (492)
..+|++|.+++++-+-.- +.| .+ .-..+-.++|+++||++|+|+-..--+. .+..+=
T Consensus 13 ~~~k~~gi~fviikateG----------~~~-------~D---~~~~~n~~~a~~aGl~~G~Yhf~~~~~~---~~a~~q 69 (181)
T PF01183_consen 13 QKVKAAGIDFVIIKATEG----------TSY-------VD---PYFESNIKNAKAAGLPVGAYHFARATNS---SDAEAQ 69 (181)
T ss_dssp HHHHHTTEEEEEEEEEET----------TTE-------E----TTHHHHHHHHHHTTSEEEEEEE--TTTH---CHHHHH
T ss_pred HHHHHCCCCEEEEEeeeC----------CCe-------ec---chHHHHHHHHHHcCCeEEEEEEeccCCc---ccHHHH
Confidence 445999999999998542 111 12 2356678899999999999975311000 001123
Q ss_pred hHHHHHHHHHHHhccCCceeEEecCCCC--CCCC--CccccHHHHHHHHHh
Q 011170 169 NEYYLAQLQELLTRYGDVREIWFDGAKG--SNAP--NMSYYFTDWFAMVKE 215 (492)
Q Consensus 169 ~~~~~~Ql~EL~t~YG~i~~lWfDg~~~--~~~~--~~~~~~~~~~~~i~~ 215 (492)
.+++..++. ..+..-..+|+|--.. .+.. ...-...++.+.+++
T Consensus 70 A~~f~~~~~---~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~ 117 (181)
T PF01183_consen 70 ADYFLNQVK---GGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEK 117 (181)
T ss_dssp HHHHHHCTH---TSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---ccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 355556655 2222212469997632 1111 111134566777755
No 112
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=51.44 E-value=21 Score=39.01 Aligned_cols=95 Identities=14% Similarity=0.267 Sum_probs=60.2
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCC-CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKF-TEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH---DPRYG 163 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~-t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~yg 163 (492)
++++++.|++..=+..-..- +.|.-. ...| .-.-+...+++++|+++||++.+-+..||.- ...||
T Consensus 77 i~l~~~lG~~~yR~si~WsR---i~P~g~~~~~n-------~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~G 146 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWSR---LFPQGDELTPN-------QQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYG 146 (474)
T ss_pred HHHHHHcCCCeEEeeceeee---eeeCCCCCCCC-------HHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcC
Confidence 78999999987765544332 112110 0011 1114788999999999999999998887732 12234
Q ss_pred C--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 164 H--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 164 ~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
. ..+..+++..-.+-+.++||+....|+=
T Consensus 147 GW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiT 177 (474)
T PRK09852 147 SWRNRKMVEFFSRYARTCFEAFDGLVKYWLT 177 (474)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCcCCeEEe
Confidence 1 2345566666667778889886656653
No 113
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=50.25 E-value=9.2 Score=38.09 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYG 163 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg 163 (492)
....+++|++.|++++++..-+..+ .+.-..+.. -.+.++++++.++++||++++=...+.. ..+.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~--------~~~~l~~l~~~a~~~gi~l~lEn~~~~~--~~~~ 152 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKR--------VIEALNELIDKAETKGVVIALETMAGQG--NEIG 152 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHH--------HHHHHHHHHHhccCCCCEEEEeCCCCCC--CCCC
Confidence 4789999999999998873332111 000001111 1478899999999999999885543221 0111
Q ss_pred CCchhhHHHHHHHHHHHhccC--CceeEEecCCC
Q 011170 164 HDLQYNEYYLAQLQELLTRYG--DVREIWFDGAK 195 (492)
Q Consensus 164 ~~~~y~~~~~~Ql~EL~t~YG--~i~~lWfDg~~ 195 (492)
+ -..++.+++...+ |-..+=+|-+.
T Consensus 153 ~-------t~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 153 S-------SFEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred C-------CHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 1 1355566777665 43567778654
No 114
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=49.86 E-value=30 Score=37.66 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCcEEEEEeeec--CC---cccCCCCCCCC-------ccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHH--DG---FCLWPSKFTEH-------SVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHH--DG---F~lWpS~~t~~-------~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
-.+-++-++++|+..|-|+--+. +| .=.|++.+.+. .|. |. -|-.+=+++|++||+++|||+.+
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id--~~-fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR--TK-YGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC--cC-cCCHHHHHHHHHHHHHCCCEEEE
Confidence 55667999999999998886543 22 12333333221 122 32 23457799999999999999766
No 115
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=49.74 E-value=27 Score=30.40 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
..++++.+.+.|+|.+++..- ..-.|+.++||++||++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g---------------------------~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG---------------------------AESEELIEAAREAGIRV 105 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT---------------------------S--HHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHcCCCEEEEEcc---------------------------hHHHHHHHHHHHcCCEE
Confidence 567888889999999999765 34478999999999986
No 116
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=49.59 E-value=3.1e+02 Score=28.13 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhc---cCCceeEEecCCCCCCCCCccccHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTR---YGDVREIWFDGAKGSNAPNMSYYFTD 208 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~---YG~i~~lWfDg~~~~~~~~~~~~~~~ 208 (492)
|.+.++++++.+.|..+-.|.-+| ..+.+-....|.+|..+-++++++. +|....+=+.|.. ..
T Consensus 180 ~~~~~~~~~~~~~Gad~I~i~dp~--a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-----------~~ 246 (340)
T TIGR01463 180 DFVIAYAKAMVEAGADVIAIADPF--ASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-----------QP 246 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCc--cCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-----------hh
Confidence 556777788888898765555433 2333334457888888777777765 6654455554431 22
Q ss_pred HHHHHHhhCCCee
Q 011170 209 WFAMVKELQSSIN 221 (492)
Q Consensus 209 ~~~~i~~~qP~~v 221 (492)
+++.+.+...+++
T Consensus 247 ~~~~l~~~g~d~l 259 (340)
T TIGR01463 247 ILRDIANNGCFGF 259 (340)
T ss_pred hHHHHHHhCCCEE
Confidence 4455666666664
No 117
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=49.49 E-value=32 Score=38.45 Aligned_cols=137 Identities=14% Similarity=0.234 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHcCCcEEEEE---eeecCCcccCC----CCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC
Q 011170 83 DANQWVNTAAEAGVSLMILT---AKHHDGFCLWP----SKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPW 155 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlT---aKHHDGF~lWp----S~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~w 155 (492)
+.++=++.++.-....+-|- =+||.=++-=+ +..+++ .+ |.--.+.|++++++++++||+...|-...
T Consensus 119 ~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~--~~---r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiy 193 (559)
T PF13199_consen 119 DIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDW--AN---RQISTSTVKDYINAAHKYGMKAMAYNMIY 193 (559)
T ss_dssp HHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TT--T-----EEEHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred hHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhh--cC---CEehHHHHHHHHHHHHHcCcceehhHhhh
Confidence 45566666676766666653 45664333211 112222 11 11125889999999999999999996431
Q ss_pred -------------CCC------CCC-----CCC------------CchhhHHHHHHHHHHHhccCCceeEEecCCCCCC-
Q 011170 156 -------------DRH------DPR-----YGH------------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSN- 198 (492)
Q Consensus 156 -------------D~~------~~~-----yg~------------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~- 198 (492)
+|. +.. +++ .+.+.+|+.+|+.+.+.++| +|++-.|-....+
T Consensus 194 aa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~g-FDG~hlDq~G~~~~ 272 (559)
T PF13199_consen 194 AANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFG-FDGWHLDQLGNRGT 272 (559)
T ss_dssp EEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT---EEEEE-S--EEE
T ss_pred ccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccC-CceEeeeccCCCCc
Confidence 110 000 110 23788999999999999999 4888888432110
Q ss_pred ---C--CCc---cccHHHHHHHHHhhCCCe-eEecC
Q 011170 199 ---A--PNM---SYYFTDWFAMVKELQSSI-NIFSD 225 (492)
Q Consensus 199 ---~--~~~---~~~~~~~~~~i~~~qP~~-vi~~~ 225 (492)
. ... .-.|..+.+.+++..|+- +++|.
T Consensus 273 ~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~ 308 (559)
T PF13199_consen 273 VYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNA 308 (559)
T ss_dssp EGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-
T ss_pred cccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeec
Confidence 0 011 123677788999988876 66664
No 118
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=49.14 E-value=35 Score=33.94 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
-+.+++.+.++.+.+.|++.+++|.-+-||-+- |+..|+++|++++. ..-+.+|
T Consensus 144 ~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~----------------G~n~~l~~~l~~~~-----~ipviaS 197 (241)
T COG0106 144 DSGVELEELAKRLEEVGLAHILYTDISRDGTLS----------------GPNVDLVKELAEAV-----DIPVIAS 197 (241)
T ss_pred cccCCHHHHHHHHHhcCCCeEEEEecccccccC----------------CCCHHHHHHHHHHh-----CcCEEEe
Confidence 467999999999999999999999999999764 77789999999998 3444555
No 119
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=47.97 E-value=68 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred cccceeeccCCC-CCCCCCccccCCCCCceeeecCCCCCCCCceE--EEecccCCceeeeEEEEEeecCCC--ce-eeEE
Q 011170 354 CFVKASSQRAGK-GGGFGPENVLDDDHLRTYWAPRDGDGISDDHW--IEIRAADEGLRFNVIRIQEAIGLG--QR-IKRH 427 (492)
Q Consensus 354 a~v~ass~~~~~-~~~~~~~~~~Dg~~~~TyWa~~~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~~G--QR-V~~~ 427 (492)
..|+|||+..-+ .++++--..-+|+ -=|-++..+..-..+| |||.. ..-|..|..|---.-| +. .+.|
T Consensus 39 ~qIsASSs~dqSt~~~~~rl~se~g~---GAWCPk~~v~~~~~E~LQvdl~~---~hlit~V~TQGR~~~G~G~Efa~~y 112 (807)
T KOG1094|consen 39 SQISASSSFDQSTGPQHARLHSEDGS---GAWCPKGQVNSKSKEYLQVDLQR---LHLITSVETQGRHAGGLGKEFARAY 112 (807)
T ss_pred hhcccccccccccccccccccccCCC---cccCCCcccCccchhheEEeeec---eEEEEEeeeccccCCCccceehhhe
Confidence 347777776531 1122221112222 4576665443212335 66665 3445555554433333 33 5789
Q ss_pred EEEE--CC-----------EEEeeeeeecceEEEe-eecCceeeeEEEEEee
Q 011170 428 EIFV--DG-----------KLVAEGTTVGHKKLHR-LENGVIDGHVVRIKIK 465 (492)
Q Consensus 428 ~v~~--dG-----------~~v~~gttIG~kri~r-~~~~~V~~~~lRi~I~ 465 (492)
+|+| +| +++-.|..=-+.-++| +++ |+-|++||+.=.
T Consensus 113 ~I~Y~Rpg~~Wi~wk~r~g~evi~gN~dt~~~v~r~L~p-pivAr~vRf~P~ 163 (807)
T KOG1094|consen 113 KIRYSRPGLRWISWKDRWGQEVIPGNEDTEGVVLRDLDP-PIVARRVRFVPV 163 (807)
T ss_pred eeeeccCcchheeeccccCceecCCCCCcchhhhhhcCc-hhhheeEEEEec
Confidence 9988 55 3343443333333333 435 899999998744
No 120
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=47.35 E-value=20 Score=35.47 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC-CCCCCCCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS-PWDRHDPRY 162 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S-~wD~~~~~y 162 (492)
.++++++++..|++.+++.+-|. |+. .+....+ .. -.+-++++++-|+++||++++=-. +.+. ..
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~-~~~--~~~~~~~--~~------~~~~l~~l~~~a~~~gv~l~iE~~~~~~~---~~ 157 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHA-GYL--TPPNVIW--GR------LAENLSELCEYAENIGMDLILEPLTPYES---NV 157 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC-CCC--CCHHHHH--HH------HHHHHHHHHHHHHHcCCEEEEecCCCCcc---cc
Confidence 45688999999999998855432 221 1100001 11 147899999999999999977532 1111 00
Q ss_pred CCCchhhHHHHHHHHHHHhccC-CceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCee
Q 011170 163 GHDLQYNEYYLAQLQELLTRYG-DVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSIN 221 (492)
Q Consensus 163 g~~~~y~~~~~~Ql~EL~t~YG-~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 221 (492)
.++ ...+.+|++.-+ |-..+.+|-+..... . ....+.|+++-+.+.
T Consensus 158 ~~t-------~~~~~~l~~~~~~~~v~~~~D~~h~~~~---~---~~~~~~i~~~~~rI~ 204 (275)
T PRK09856 158 VCN-------ANDVLHALALVPSPRLFSMVDICAPYVQ---A---EPVMSYFDKLGDKLR 204 (275)
T ss_pred cCC-------HHHHHHHHHHcCCCcceeEEeecchhcC---C---CCHHHHHHHhCCcEE
Confidence 111 234455565554 334567786542211 1 123456666666543
No 121
>PLN02814 beta-glucosidase
Probab=47.32 E-value=27 Score=38.50 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCCCC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRH---DPRYGH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~yg~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
-|.-.+++++|+++||++-+-++.||-- ...||. ..+..+++..=.+-+.++||+....|+=
T Consensus 116 l~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT 182 (504)
T PLN02814 116 LLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTT 182 (504)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEe
Confidence 4788899999999999999999998842 122442 2233344444446677888886666764
No 122
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=47.08 E-value=1.3e+02 Score=35.06 Aligned_cols=137 Identities=16% Similarity=0.294 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-CCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-PRY 162 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~-~~y 162 (492)
=++-.+.++..+.+-+=+.+-|-|=. .|..+...|+.+..-|.++| .|++-.++.|||+.++.-|.--.+ +.|
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~~-~~~~~~~~F~wd~~~FP~pk-----~mi~~l~~~Gikl~~~i~P~i~~d~~~~ 352 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDID-FWMDNWGDFTWDPDRFPDPK-----QMIAELHEKGIKLIVIINPYIKQDSPLF 352 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEeeh-hhhccccceEECcccCCCHH-----HHHHHHHhcCceEEEEeccccccCCchH
Confidence 34445555555555555555555543 67666666655443333544 899999999999999987632111 100
Q ss_pred -----------------------CC--------CchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCC----------
Q 011170 163 -----------------------GH--------DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPN---------- 201 (492)
Q Consensus 163 -----------------------g~--------~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~---------- 201 (492)
.. .++-.+.|..+..+.+...| |+.+|.|++-+.....
T Consensus 353 ~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~~~~~g~~~~ 431 (772)
T COG1501 353 KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGDGFGNGIDHE 431 (772)
T ss_pred HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccccccccccCHH
Confidence 00 12233455546666666667 6999999875432100
Q ss_pred ---ccc---cHHHHHHHHHhh--CCCeeEecCCC
Q 011170 202 ---MSY---YFTDWFAMVKEL--QSSINIFSDAG 227 (492)
Q Consensus 202 ---~~~---~~~~~~~~i~~~--qP~~vi~~~~g 227 (492)
..| .....|+.++++ +...+++++.|
T Consensus 432 ~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg 465 (772)
T COG1501 432 EMHNLYPLLYAKAVYEALKELGGNERPFILSRSG 465 (772)
T ss_pred HHhcchhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 111 234567888888 45678887754
No 123
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=47.05 E-value=48 Score=39.43 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=44.9
Q ss_pred EEEEecccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCC
Q 011170 53 MFLHFGVNTFTDSEWGTGNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGD 132 (492)
Q Consensus 53 ~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krD 132 (492)
||+|.-+.|...- -=..-.+++.|+.|++.||..+.|| |++... |
T Consensus 1 mfvhLh~hS~YSl------------Ldg~~~~~~lv~~A~e~g~~alALT---------------D~~nl~----G---- 45 (971)
T PRK05898 1 MFINLNTHSHYSL------------LSSTLSIDDIIKFALDNNQPYVCLT---------------DLNNLY----G---- 45 (971)
T ss_pred CeeeeecCCcccc------------ccccCCHHHHHHHHHHCCCCEEEEE---------------eCCccc----c----
Confidence 6888877764221 0112568999999999999999885 554332 1
Q ss_pred hHHHHHHHHHHcCCeeEE
Q 011170 133 VVQELVNAAKARGVDVGL 150 (492)
Q Consensus 133 iV~El~~Acrk~Glk~G~ 150 (492)
+-||.++|+++|||+-+
T Consensus 46 -aveF~~~ak~~gIkPIi 62 (971)
T PRK05898 46 -CIEFYDKAKAHNLIPII 62 (971)
T ss_pred -HHHHHHHHHHcCCCEEE
Confidence 46899999999999854
No 124
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=46.74 E-value=41 Score=37.49 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecC-----CcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHD-----GFCLWPSKFTEH-SVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHD-----GF~lWpS~~t~~-~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
-.+.++-++++|++.|.|+.-+.. ||. ..+| .|. |--| ..+=+++|+++|+++|||+.+=
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~-----~~d~~~id--~~~G-t~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYD-----VANYTAID--PTYG-TLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCC-----cccCCCcC--cccC-CHHHHHHHHHHHHHCCCEEEEE
Confidence 346678999999999999875421 221 2343 222 2123 3466899999999999999873
No 125
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=46.36 E-value=1.1e+02 Score=31.31 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecC
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDG 193 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg 193 (492)
+-+.+.+++|+++|+|+-+.+..|..... -.+..-.+-+.+.+.+++.+|| +|+|=||-
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~~~--~~~~~~~~~fa~sl~~~~~~~g-~DGiDiD~ 118 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGHVD--LNHTAQEDNFVDSIVAIIKEYG-FDGLDIDL 118 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCccc--cCCHHHHHHHHHHHHHHHHHhC-CCeEEEec
Confidence 44677778999999999998876653211 1223444556688889999998 46654553
No 126
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=45.91 E-value=1e+02 Score=30.44 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLW 112 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lW 112 (492)
+|+.++.+++.|++--.-+.-.|+...-|
T Consensus 18 ~D~~~~~a~~~gi~v~gH~l~W~~~~P~W 46 (254)
T smart00633 18 ADAIVNFAKENGIKVRGHTLVWHSQTPDW 46 (254)
T ss_pred HHHHHHHHHHCCCEEEEEEEeecccCCHh
Confidence 67799999999999643333344443333
No 127
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=45.73 E-value=91 Score=33.64 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=56.0
Q ss_pred EEecccCCceeeeEEEEEeecCCCceeeEEEEEE--CC---EEE---------e-eeeeecceEEEeeecCceeeeEEEE
Q 011170 398 IEIRAADEGLRFNVIRIQEAIGLGQRIKRHEIFV--DG---KLV---------A-EGTTVGHKKLHRLENGVIDGHVVRI 462 (492)
Q Consensus 398 i~l~~~~~~~~fn~v~l~E~i~~GQRV~~~~v~~--dG---~~v---------~-~gttIG~kri~r~~~~~V~~~~lRi 462 (492)
||+...+ ..++.|.|.=.-...+.+.+|+||. |. ..| . .++++.+.+|. | + ..+++.|||
T Consensus 118 ld~s~~~--~~l~~L~L~w~~~~~~~~~~v~VeaSdDl~~W~~l~~~~~l~~L~~~~~~l~~~~I~-L-~-~~~~rYLRl 192 (429)
T PF13163_consen 118 LDLSALK--EPLDALRLDWPQSNFNWQARVSVEASDDLQHWRPLAGDAQLMDLSNGGQRLVQDRIE-L-P-GSNARYLRL 192 (429)
T ss_pred EECcccc--cchhheEEEeecCCCCceEEEEEEEecCcccceEccCCceEEEeccCCcceeeeeEc-c-C-CCCCceEEE
Confidence 6666643 3677777765444556778899987 32 333 2 35567777777 7 5 689999999
Q ss_pred EeeccCCCceEeEEEEEecC
Q 011170 463 KIKESRAVPLISSIGLHFDP 482 (492)
Q Consensus 463 ~I~~s~~~P~I~~~~vy~~~ 482 (492)
++.+....|.+..+.+....
T Consensus 193 ~~~~~~~~p~l~~~~l~~~~ 212 (429)
T PF13163_consen 193 TWNDPQSAPPLTSVSLESQQ 212 (429)
T ss_pred EeCCCCCCCcceeEEeeecc
Confidence 99666778899998888753
No 128
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.63 E-value=22 Score=32.39 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWD 156 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD 156 (492)
.+-+|++.+.++++ |+..++.+.-++.. ..|.++.+.+||++.|++--+|.|.+-
T Consensus 46 ~d~~d~~~~~~al~--~~d~vi~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 46 GDLFDPDSVKAALK--GADAVIHAAGPPPK---------------------DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp SCTTCHHHHHHHHT--TSSEEEECCHSTTT---------------------HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred eeehhhhhhhhhhh--hcchhhhhhhhhcc---------------------cccccccccccccccccccceeeeccc
Confidence 34588999999888 99999998843332 149999999999999999999999754
No 129
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=45.56 E-value=30 Score=37.84 Aligned_cols=61 Identities=11% Similarity=0.312 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCC---CCCCC--CchhhHHHHHHHHHHHhccCCceeEEe
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHD---PRYGH--DLQYNEYYLAQLQELLTRYGDVREIWF 191 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~---~~yg~--~~~y~~~~~~Ql~EL~t~YG~i~~lWf 191 (492)
-|.-.+++++|+++||++.+-+..||.-. ..||. ..+..+++..-.+-++++||+....|+
T Consensus 109 l~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~Wi 174 (477)
T PRK15014 109 LKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWM 174 (477)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEE
Confidence 47889999999999999999999888422 23442 234445555555667788887555554
No 130
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=44.92 E-value=60 Score=33.37 Aligned_cols=51 Identities=14% Similarity=0.363 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc--CCeeEEE
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKAR--GVDVGLY 151 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~--Glk~G~Y 151 (492)
+.+-|+.+++.|.|++|||+-++|.+ . ++..+-+.+++++.++. ++++.+.
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl-------~----------d~g~~~l~~li~~I~~~~p~i~Ievl 148 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDL-------E----------DGGASHLAECIEAIREKLPNIKIETL 148 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCc-------c----------cccHHHHHHHHHHHHhcCCCCEEEEe
Confidence 44566777888999999999998732 1 11235688888888886 5666654
No 131
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=44.88 E-value=84 Score=37.54 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCC
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKG 196 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~ 196 (492)
+-.++|..+++.|++ +| ++.+|.|+..+
T Consensus 310 ~ar~WW~~~~k~l~d-~G-VDG~W~DmnEP 337 (978)
T PLN02763 310 KTRSWWANLVKDFVS-NG-VDGIWNDMNEP 337 (978)
T ss_pred HHHHHHHHHHHHHhc-CC-CcEEEccCCCC
Confidence 334678888888776 67 69999998653
No 132
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=44.61 E-value=31 Score=34.21 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCCCccccCCCC---CceeeecCCCCC---CCCceEEEecccCCceeeeEEEEEe
Q 011170 368 GFGPENVLDDDH---LRTYWAPRDGDG---ISDDHWIEIRAADEGLRFNVIRIQE 416 (492)
Q Consensus 368 ~~~~~~~~Dg~~---~~TyWa~~~~~~---~~~~~wi~l~~~~~~~~fn~v~l~E 416 (492)
.+.+++++|++. . |+|.++.... ..+.+ |+|++ ...|-.|+|+=
T Consensus 58 ~Hp~~~l~D~~~~~~~-TwWQS~~~~~~~~~Vtit-LdL~k---~fevtyi~l~F 107 (238)
T smart00136 58 SHPAENLTDGNNPNNP-TWWQSEPLSNGPQNVNLT-LDLGK---EFHVTYVILKF 107 (238)
T ss_pred cCCHHHhhccCCCCCC-ceecCCCcCCCCccEEEE-EecCC---EEEEEEEEEEe
Confidence 688899999765 5 9999876322 11122 66665 55666666554
No 133
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=44.51 E-value=54 Score=30.95 Aligned_cols=112 Identities=16% Similarity=0.272 Sum_probs=58.9
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCc
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDL 166 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~ 166 (492)
|-. +|++|.+++++-+-.-.. .+ .| .+ .-..+-.+.|+++||++|+|.=..- ..+ .+..
T Consensus 15 ~~~-~k~~g~~fviiKateG~~----g~---~~-------~D---~~~~~~~~~A~~aGl~~G~YHf~~~-~~~--~~a~ 73 (191)
T cd06414 15 WKK-VKASGVDFAIIRAGYGGY----GE---LQ-------ED---KYFEENIKGAKAAGIPVGVYFYSYA-VTV--AEAR 73 (191)
T ss_pred HHH-HHhCCCCEEEEEEecCCC----cc---cc-------cC---HHHHHHHHHHHHCCCceEEEEEEEe-CCH--HHHH
Confidence 544 677899999998866432 11 01 11 4467788999999999999963210 000 0011
Q ss_pred hhhHHHHHHHHHHHhccCCceeEEecCCCCCCCC---C---ccccHHHHHHHHHhhCCCeeEe
Q 011170 167 QYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAP---N---MSYYFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 167 ~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~---~---~~~~~~~~~~~i~~~qP~~vi~ 223 (492)
.-.+++.+.++ .++.-..+|+|--...... . ..-...++.+.|++..-..+|.
T Consensus 74 ~qA~~f~~~~~----~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iY 132 (191)
T cd06414 74 EEAEFVLRLIK----GYKLSYPVYYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPGIY 132 (191)
T ss_pred HHHHHHHHHhh----ccCCCCCeEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 22345555544 3454234678853322111 1 1113456667776632234444
No 134
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=43.72 E-value=43 Score=38.75 Aligned_cols=128 Identities=16% Similarity=0.299 Sum_probs=67.8
Q ss_pred CCCCCCCCH-HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCC-CCChHHHHHHHHHHcCCe--eEEE
Q 011170 76 IFNPLGLDA-NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHG-RGDVVQELVNAAKARGVD--VGLY 151 (492)
Q Consensus 76 ~F~p~~fD~-dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~-krDiV~El~~Acrk~Glk--~G~Y 151 (492)
++++..|-. .+.++.+.+-|+||+++.- |...++-+ ..+|..+ ++|+..- ..+|++ +|-+
T Consensus 344 Tvd~~~fp~~~~fv~~Lh~~G~kyvliid---------P~is~~~~--y~~y~~g~~~~v~I~-----~~~g~~~~lg~v 407 (805)
T KOG1065|consen 344 TVDKVWFPDLKDFVDDLHARGFKYVLIID---------PFISTNSS--YGPYDRGVAKDVLIK-----NREGSPKMLGEV 407 (805)
T ss_pred eeccccCcchHHHHHHHHhCCCeEEEEeC---------CccccCcc--chhhhhhhhhceeee-----cccCchhhhccc
Confidence 457888877 8999999999999998864 22222111 1122111 1111110 112333 2333
Q ss_pred eCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCC--------------CCccccHHHHHHHHHhhC
Q 011170 152 LSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNA--------------PNMSYYFTDWFAMVKELQ 217 (492)
Q Consensus 152 ~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~--------------~~~~~~~~~~~~~i~~~q 217 (492)
... .--.|++.+. .=...+.+.+..+-+.++ ++.+|+|+.....- ....|+...+|...+..+
T Consensus 408 wP~-~~~fpDftnp-~~~~Ww~~~~~~fh~~vp-~dg~wiDmnE~snf~~pp~~~~~~~~~~~~~tyd~~~lyg~~~aia 484 (805)
T KOG1065|consen 408 WPG-STAFPDFTNP-AVVEWWLDELKRFHDEVP-FDGFWIDMNEPSNFPSPPINPTLDNGDLYAKTYDTHNLYGYSEAIA 484 (805)
T ss_pred CCC-cccccccCCc-hHHHHHHHHHHhhcccCC-ccceEEECCCcccCCCCCcccccccccccccchhhhhhHhHHHhhh
Confidence 222 1112233332 345667777776666655 69999998644110 011255566777777777
Q ss_pred CCeeE
Q 011170 218 SSINI 222 (492)
Q Consensus 218 P~~vi 222 (492)
+..-+
T Consensus 485 t~~a~ 489 (805)
T KOG1065|consen 485 THQAL 489 (805)
T ss_pred hhccc
Confidence 76543
No 135
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=43.65 E-value=41 Score=32.52 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
...++.|++.|.+-|||= -.||- | + --|+.|++++|+.||+|
T Consensus 170 k~IAerAl~kGI~kVvFD---RgGy~--------Y--------H---GRVkALAdaARe~GLkF 211 (211)
T PTZ00032 170 KLIGRKALSKGISKVRFD---RAHYK--------Y--------A---GKVEALAEGARAVGLQF 211 (211)
T ss_pred HHHHHHHHHCCCCEEEEe---CCCCe--------e--------h---hHHHHHHHHHHHcCCCC
Confidence 567889999999999874 22221 1 2 45999999999999986
No 136
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=43.22 E-value=40 Score=32.28 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
++.+++.+.++||.++.+-+... .+-+.++.++||++|+++|+-..+
T Consensus 69 ~~~~~~~~~~~gad~vtvh~e~g------------------------~~~l~~~i~~~~~~g~~~~v~~~~ 115 (215)
T PRK13813 69 NRLICEAVFEAGAWGIIVHGFTG------------------------RDSLKAVVEAAAESGGKVFVVVEM 115 (215)
T ss_pred HHHHHHHHHhCCCCEEEEcCcCC------------------------HHHHHHHHHHHHhcCCeEEEEEeC
Confidence 44455777788888776643321 245788999999999999998754
No 137
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=42.58 E-value=1.3e+02 Score=31.00 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=62.3
Q ss_pred CceEEEEEecccccCCCCCCCCCCCCCCCCCCC---CC---HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccc
Q 011170 49 RELIMFLHFGVNTFTDSEWGTGNENPEIFNPLG---LD---ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVA 122 (492)
Q Consensus 49 ~kfG~FiHwG~~t~~~~EW~~g~~~p~~F~p~~---fD---~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~ 122 (492)
..+=|.=||.--. ...|=|+ .-.++|.... .| ..+.+++.++.|...+||.--.-+...|
T Consensus 21 ~~~R~lNhWDN~d-gsiERGY--aG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~~L----------- 86 (328)
T PF07488_consen 21 APLRMLNHWDNLD-GSIERGY--AGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPKLL----------- 86 (328)
T ss_dssp SSEEEEE--B-TT-S-BTT----SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CGGG-----------
T ss_pred cceeecccccCCC-Cceeccc--CcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChhhc-----------
Confidence 3566777885321 0123222 2235554322 12 5689999999999999997655544221
Q ss_pred cCCCCCCCCChHHHHHHHHHHcCCeeEEEeC---CCC-----CCCCCCCCCchhhHHHHHHHHHHHhccCCce
Q 011170 123 HSPWKHGRGDVVQELVNAAKARGVDVGLYLS---PWD-----RHDPRYGHDLQYNEYYLAQLQELLTRYGDVR 187 (492)
Q Consensus 123 ~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S---~wD-----~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~ 187 (492)
.+++ .+=|+.+++.+|.+|||+++... |-+ -.+| .+++-.+.|.+...|+-+..-++.
T Consensus 87 t~~~----l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~TaDP---ld~~V~~WW~~k~~eIY~~IPDfg 152 (328)
T PF07488_consen 87 TPEY----LDKVARLADVFRPYGIKVYLSVNFASPIELGGLPTADP---LDPEVRQWWKDKADEIYSAIPDFG 152 (328)
T ss_dssp STTT----HHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S---T---TSHHHHHHHHHHHHHHHHH-TT--
T ss_pred CHHH----HHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcCcCCC---CCHHHHHHHHHHHHHHHHhCCCcc
Confidence 2222 47799999999999999988753 211 1111 145677888888888887655543
No 138
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=42.32 E-value=1.5e+02 Score=27.44 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHH-HHHhccCCceeEE-ecCCCCCCCCCccccHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQ-ELLTRYGDVREIW-FDGAKGSNAPNMSYYFTD 208 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~-EL~t~YG~i~~lW-fDg~~~~~~~~~~~~~~~ 208 (492)
-|++.++.+.|.++|.++.++=+. ++. ..++. .|..+|..+..+- .||..+.. +-++
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~-----------~~~----~~~~~~~l~~~yp~l~i~g~~~g~~~~~------~~~~ 90 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAK-----------PEV----LEKAAERLRARYPGLKIVGYHHGYFGPE------EEEE 90 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCC-----------HHH----HHHHHHHHHHHCCCcEEEEecCCCCChh------hHHH
Confidence 599999999999999999987552 222 23333 3556788887775 55543221 2244
Q ss_pred HHHHHHhhCCCeeEec
Q 011170 209 WFAMVKELQSSINIFS 224 (492)
Q Consensus 209 ~~~~i~~~qP~~vi~~ 224 (492)
+.+.|++.+||+|+..
T Consensus 91 i~~~I~~~~pdiv~vg 106 (171)
T cd06533 91 IIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 7889999999998764
No 139
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.07 E-value=42 Score=32.52 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 80 LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 80 ~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
+=+|++| ++.+.+|||+|+| ||. +..|++++|+++|+.+
T Consensus 66 TVl~~~~-a~~a~~aGA~Fiv-----------------------sP~------~~~~v~~~~~~~~i~~ 104 (204)
T TIGR01182 66 TVLNPEQ-LRQAVDAGAQFIV-----------------------SPG------LTPELAKHAQDHGIPI 104 (204)
T ss_pred eCCCHHH-HHHHHHcCCCEEE-----------------------CCC------CCHHHHHHHHHcCCcE
Confidence 3467888 8889999999995 331 2348999999999853
No 140
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=41.24 E-value=46 Score=36.42 Aligned_cols=62 Identities=16% Similarity=0.374 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCC---CCCCC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHD---PRYGH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~---~~yg~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
-+.-.+|+++|+++||++.+-+..||--. ..||. ..+..+++..=.+-+.++||+....|+=
T Consensus 113 l~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT 179 (478)
T PRK09593 113 LQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLT 179 (478)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEe
Confidence 37788999999999999999999888432 23442 2233344444446667888886666664
No 141
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=40.80 E-value=27 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.474 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCcEEEEEeeecC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHD 107 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHD 107 (492)
..|.+.+|+.|+|+|++.|-+++
T Consensus 74 ~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 74 NDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHhcCCcEEEEEecCcc
Confidence 78999999999999999998765
No 142
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=40.37 E-value=28 Score=38.04 Aligned_cols=133 Identities=13% Similarity=0.209 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC--CCCC---C
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP--WDRH---D 159 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~--wD~~---~ 159 (492)
.|...+-++.|++||=+=.==+|+....... .+=.+ .+|- -..|-++.+...+.|||+-+=+|- -... .
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~-~~~~~--~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSES-DEDGI--PPYN---FTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEEE-ETTEE--EEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhcccc-ccCCC--CcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 4777788899999995543335655543220 00000 0121 578899999999999999777662 1100 0
Q ss_pred CCC--C-------CCchhhHHHHHHHHHHHhccCC------ceeEEecCCCCC--C-CCCccc--cHHHHHHHHHhhCCC
Q 011170 160 PRY--G-------HDLQYNEYYLAQLQELLTRYGD------VREIWFDGAKGS--N-APNMSY--YFTDWFAMVKELQSS 219 (492)
Q Consensus 160 ~~y--g-------~~~~y~~~~~~Ql~EL~t~YG~------i~~lWfDg~~~~--~-~~~~~~--~~~~~~~~i~~~qP~ 219 (492)
..| . +...+.+++..-++-+..|||- ..|+|..-.... . .....| .+...++.||+..|+
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~ 196 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPE 196 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 001 0 1135567777777888899993 247777411110 0 001111 245566789999999
Q ss_pred eeEe
Q 011170 220 INIF 223 (492)
Q Consensus 220 ~vi~ 223 (492)
+.|-
T Consensus 197 ~~vG 200 (486)
T PF01229_consen 197 LKVG 200 (486)
T ss_dssp SEEE
T ss_pred Cccc
Confidence 9874
No 143
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=40.30 E-value=1.9e+02 Score=28.27 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCC-CCCCchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPR-YGHDLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~-yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
+...+.+.++++.|+|+-+.+..+...... ...+.+-.+-+..++..++.+|| +|++=+|
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yg-lDGiDiD 111 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYG-LDGVDFD 111 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhC-CCceEEe
Confidence 677889999999999999988876543321 11122223444578889999998 4666555
No 144
>PLN02998 beta-glucosidase
Probab=40.21 E-value=38 Score=37.29 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH---DPRY 162 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~y 162 (492)
+=++++|++|++..=+.--=-- +.|.-....|- -.-|.-.+++++|+++||++-+-+..||-- ...|
T Consensus 86 EDi~lmk~lG~~~YRfSIsWsR---I~P~G~g~vN~-------~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~y 155 (497)
T PLN02998 86 EDVKLMADMGLEAYRFSISWSR---LLPSGRGPINP-------KGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEY 155 (497)
T ss_pred HHHHHHHHcCCCeEEeeccHHh---cCcCCCCCcCH-------HHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhh
Confidence 3378999999976533211000 11111111111 114778899999999999999999998842 1224
Q ss_pred CC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 163 GH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 163 g~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
|. ..+..+++..=.+-+.++||+....|+=
T Consensus 156 GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT 187 (497)
T PLN02998 156 GGWLSQEIVRDFTAYADTCFKEFGDRVSHWTT 187 (497)
T ss_pred CCcCCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 42 2233344444446677888886666764
No 145
>PLN03059 beta-galactosidase; Provisional
Probab=39.71 E-value=6.4e+02 Score=29.85 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=42.2
Q ss_pred CCCCCCCCC--CCCCCHHHHHHHHHhhhccCceEE-------------E------------ccCCCCCCCCCHHHHHHHH
Q 011170 284 RKGWFWHKS--ETPKKLSELLEIYYNSVGRNCVML-------------L------------NVPPNTTGLISETDVQRLR 336 (492)
Q Consensus 284 ~~~Wfy~~~--~~~ks~~~Li~~l~~~V~rngnlL-------------L------------NigP~~dG~Ip~~~~~~L~ 336 (492)
-++||=+=+ ...++++++...+.+.+++|+.++ . +.|.+..|.+.+.--..|+
T Consensus 257 w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr 336 (840)
T PLN03059 257 WTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLR 336 (840)
T ss_pred CchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHH
Confidence 467874433 356799999999988888887742 1 4456677888776667777
Q ss_pred HHHHHHH
Q 011170 337 EFGTAID 343 (492)
Q Consensus 337 e~G~wl~ 343 (492)
++-+.++
T Consensus 337 ~l~~~~~ 343 (840)
T PLN03059 337 DLHKAIK 343 (840)
T ss_pred HHHHHHH
Confidence 7777764
No 146
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=39.69 E-value=2.3e+02 Score=26.72 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHH-HHHHhccCCceeEEecCCCCCCCCCccccHHH
Q 011170 130 RGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQL-QELLTRYGDVREIWFDGAKGSNAPNMSYYFTD 208 (492)
Q Consensus 130 krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql-~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~ 208 (492)
.-|++.++.+.|.++|+++.++=+. ++ ..+++ +-|..+|..+...-.+|.-.. -+-++
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~-----------~~----v~~~~~~~l~~~yP~l~i~g~~g~f~~------~~~~~ 91 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGK-----------PD----VLQQLKVKLIKEYPKLKIVGAFGPLEP------EERKA 91 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCC-----------HH----HHHHHHHHHHHHCCCCEEEEECCCCCh------HHHHH
Confidence 3599999999999999988887442 11 23333 335568877766655544211 12356
Q ss_pred HHHHHHhhCCCeeEec
Q 011170 209 WFAMVKELQSSINIFS 224 (492)
Q Consensus 209 ~~~~i~~~qP~~vi~~ 224 (492)
+.+.|++.+||.|+..
T Consensus 92 i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 92 ALAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 7888999999988754
No 147
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=39.61 E-value=34 Score=35.77 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCee-EEEeCCCCCCC----CCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCC-CCC---Ccccc
Q 011170 135 QELVNAAKARGVDV-GLYLSPWDRHD----PRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGS-NAP---NMSYY 205 (492)
Q Consensus 135 ~El~~Acrk~Glk~-G~Y~S~wD~~~----~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~-~~~---~~~~~ 205 (492)
.++.+|++|+|+|+ |..+-.|+-.. ..-.++++-...+.++|-||+..||= |++-+|--... +.. ...-.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGf-DGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGF-DGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCC-CceEeeeeccCCcHHHHHHHHHH
Confidence 67889999999999 44444454000 00111133345567899999999993 66656543322 111 01112
Q ss_pred HHHHHHHHHhhCCCee
Q 011170 206 FTDWFAMVKELQSSIN 221 (492)
Q Consensus 206 ~~~~~~~i~~~qP~~v 221 (492)
...+.+.+++..|+..
T Consensus 128 ~~~L~~~~~~~~~~~~ 143 (339)
T cd06547 128 LRYLKAKLHENVPGSL 143 (339)
T ss_pred HHHHHHHHhhcCCCcE
Confidence 3444555555566653
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.46 E-value=34 Score=33.70 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
.++.++++++.|+++|++.. |. .+...++-.. |. --.+-++++++.++++|+++++=.
T Consensus 87 ~~~~i~~a~~lga~~i~~~~----g~--~~~~~~~~~~----~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLV----GK--TPAGFSSEQI----HA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHhCCCEEEECC----CC--CCCCCCHHHH----HH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 47888999999999987632 32 1222111000 00 013777899999999999998854
No 149
>TIGR03586 PseI pseudaminic acid synthase.
Probab=39.16 E-value=51 Score=34.28 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC-----------CCCChHHHHHHHHHHcCCeeEE
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH-----------GRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~-----------~krDiV~El~~Acrk~Glk~G~ 150 (492)
+.+.++.|++|||.-|=|-+-.-|-+.. ++....|......|.+ -..|..++|.+.|++.||.|..
T Consensus 19 A~~lI~~A~~aGAdavKFQ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 19 ALAMIEAAKAAGADAIKLQTYTPDTITL-DSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHhCCCEEEeeeccHHHhhc-cccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEE
Confidence 7789999999999987776644444431 1111112211122211 1136678999999999999875
No 150
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=39.09 E-value=46 Score=36.40 Aligned_cols=61 Identities=18% Similarity=0.412 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCCCC--CchhhHHHHHHHHHHHhccCCceeEEe
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRH---DPRYGH--DLQYNEYYLAQLQELLTRYGDVREIWF 191 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~yg~--~~~y~~~~~~Ql~EL~t~YG~i~~lWf 191 (492)
-|.-.+++++|+++||++.+-+..||-- ...||. ..+..+++..=.+-+.++||+....|+
T Consensus 107 l~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 172 (476)
T PRK09589 107 LQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWM 172 (476)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 4778899999999999999999998832 122442 123333333334556777787454554
No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.54 E-value=48 Score=32.76 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
.++++.|++.|++++++. |+..+.+.-+.-.... -.+-++++++-++++||++++=..
T Consensus 97 ~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQR------FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHH------HHHHHHHHHHHHHHhCCEEEEEec
Confidence 589999999999999862 3322211101000000 024577788888999999997544
No 152
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.23 E-value=74 Score=36.53 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCcEEEEEe--eecCCccc------CC-CCCCCCccc----cCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 84 ANQWVNTAAEAGVSLMILTA--KHHDGFCL------WP-SKFTEHSVA----HSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTa--KHHDGF~l------Wp-S~~t~~~v~----~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
-.+.++-+++.|+..|-|+. +|.+|..- +| ..++.|.+. ..|.- |.-+-+++|+++|+++|||+.+
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~-Gt~~dfk~Lv~~aH~~Gi~Vil 310 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANM-GTEADLRTLVDEAHQRGIRILF 310 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCC-CCHHHHHHHHHHHHHCCCEEEE
Confidence 45678899999999998864 44333210 11 123333221 12322 3357799999999999999876
No 153
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=38.07 E-value=3e+02 Score=29.36 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCC-CCCC--CCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWP-SKFT--EHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDR- 157 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWp-S~~t--~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~- 157 (492)
|..+++....|++|++.|=+. ||.|- +.++ +..+...+ .. . .|.+.++.++++||++-+=+|....
T Consensus 73 ~~~~~~~~~ik~~G~n~VRiP------i~~~~~~~~~~~~p~~~~~~--~~-~-~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 73 FITEEDFDQIKSAGFNAVRIP------IGYWALQATDGDNPYLIGLT--QL-K-ILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred hhhhhHHHHHHHcCCcEEEcc------cchhhhhccCCCCCCeecch--HH-H-HHHHHHHHHHhcCeeEEEEecccCCC
Confidence 567999999999999998654 44444 3322 11121100 11 2 8899999999999999998875431
Q ss_pred -C-------CCCCCCCchhhHHHHHHHHHHHhccCCceeEE-ecCCCCC
Q 011170 158 -H-------DPRYGHDLQYNEYYLAQLQELLTRYGDVREIW-FDGAKGS 197 (492)
Q Consensus 158 -~-------~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lW-fDg~~~~ 197 (492)
. ...|.......+.+.+-++.+..+|++-..+- ||-.+.+
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP 191 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEP 191 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCC
Confidence 1 11233323445677788899999999855554 6655443
No 154
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=37.65 E-value=71 Score=37.63 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecC-CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHD-GFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHD-GF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
..+.+.-+++.|++.+.+.--+.. .-..+.=...+|..-+ |.-| ..|=+++|+++|+++||++.+=+-
T Consensus 22 ~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-p~lG-t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 22 AAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-PELG-GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-CCCC-CHHHHHHHHHHHHHCCCEEEEEec
Confidence 566777889999999988875431 1112222234554222 3233 358899999999999999988554
No 155
>PLN02591 tryptophan synthase
Probab=37.50 E-value=62 Score=32.36 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=44.4
Q ss_pred CCCC-CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 76 IFNP-LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 76 ~F~p-~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
-+|| -++..+.+++.++++|++.+++. | -|+ +=..++.++|+++||.+-+..||
T Consensus 86 Y~N~i~~~G~~~F~~~~~~aGv~Gviip---------------D-----LP~-----ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 86 YYNPILKRGIDKFMATIKEAGVHGLVVP---------------D-----LPL-----EETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred cccHHHHhHHHHHHHHHHHcCCCEEEeC---------------C-----CCH-----HHHHHHHHHHHHcCCeEEEEeCC
Confidence 3455 35678999999999999999997 1 231 66789999999999999999986
No 156
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=37.31 E-value=1.2e+02 Score=30.85 Aligned_cols=63 Identities=24% Similarity=0.494 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
+..++++.|++.|..|+++ -+|...|-.. ..+++.. ++ ...=|.||++=+|+.|+++-|+++.
T Consensus 33 ~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~-~~~d~~~-~~---~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLV----DAGWYGWEKD-DDFDFTK-PI---PDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEE----BTTCCGS--T-TT--TT--B----TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEe----cccccccccc-ccccccc-cC---CccCHHHHHHHHHHcCCCEEEEEeC
Confidence 4678999999999999999 6676653221 2222221 11 1477899999999999999999873
No 157
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=37.13 E-value=52 Score=25.03 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCcEEEEEeeec
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH 106 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH 106 (492)
++.++.|.++||+|..+|.-+-
T Consensus 22 ~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 22 EALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 5788999999999999998876
No 158
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=36.94 E-value=71 Score=34.86 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC--CC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP--RY 162 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~--~y 162 (492)
++=++++|++|++..=+.---.- +.|.-....|- -.-|.-.+++++|+++||++-+-+..||--.. .+
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsR---I~P~G~g~vN~-------~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~ 126 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSR---IFPDGYGEVNP-------KGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN 126 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhh---cCcCCCCCcCH-------HHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc
Confidence 34478999999986544321100 11111111111 11478889999999999999999998873210 12
Q ss_pred CC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 163 GH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 163 g~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
|. ..+..+++..=.+-+.++||+ ...|+=
T Consensus 127 GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T 157 (469)
T PRK13511 127 GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTT 157 (469)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 21 224444554445777889999 777864
No 159
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=36.80 E-value=76 Score=31.92 Aligned_cols=54 Identities=22% Similarity=0.532 Sum_probs=43.6
Q ss_pred CCCC-CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 76 IFNP-LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 76 ~F~p-~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
-+|| -++..+.+++.++++|++.+++. | -|. +=..++.++|+++||.+.+..+|
T Consensus 99 Y~N~i~~~G~e~F~~~~~~aGvdgviip---------------D-----LP~-----ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLIIP---------------D-----LPY-----EESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred cccHHHHhCHHHHHHHHHHcCCeEEEec---------------C-----CCH-----HHHHHHHHHHHHcCCCEEEEECC
Confidence 3455 45678999999999999999873 1 121 44789999999999999999997
No 160
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.70 E-value=2.9e+02 Score=27.17 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
|..++.++-++.++++|.++|=+.... .+. ... ...|. ..-++++.++|+++||++...
T Consensus 13 ~~~~~~~e~~~~~~~~G~~~iEl~~~~------~~~---~~~--~~~~~---~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 13 PKHLSWEERLVFAKELGFDFVEMSVDE------SDE---RLA--RLDWS---KEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCC------ccc---ccc--cccCC---HHHHHHHHHHHHHcCCCceEE
Confidence 566899999999999999999885321 000 000 00111 234889999999999998654
No 161
>PLN02334 ribulose-phosphate 3-epimerase
Probab=36.37 E-value=92 Score=30.27 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
||+.+++.+.++||.++.+-..- . ..|...+.++.++++|+++|+..++
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~~q------------~-----------~~d~~~~~~~~i~~~g~~iGls~~~ 124 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHIEQ------------A-----------STIHLHRLIQQIKSAGMKAGVVLNP 124 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEeecc------------c-----------cchhHHHHHHHHHHCCCeEEEEECC
Confidence 68999999999999998763320 0 0266678889999999999999864
No 162
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=36.04 E-value=49 Score=32.85 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcc
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFC 110 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~ 110 (492)
++.+|+=+|++.+.+.||.-++||.--.||-.
T Consensus 152 ~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk 183 (256)
T COG0107 152 DTGLDAVEWAKEVEELGAGEILLTSMDRDGTK 183 (256)
T ss_pred CCCcCHHHHHHHHHHcCCceEEEeeecccccc
Confidence 48899999999999999999999999999954
No 163
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=35.78 E-value=2.2e+02 Score=31.15 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWF 210 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~ 210 (492)
-|.+--++..+.+-||.+-.=-++. + +..|.+--.+.+.+++..||+-..+-.|+. ++.++.
T Consensus 323 p~~~i~LarfL~elGmevV~vgt~~-------~-~~~~~~~d~~~l~~~~~~~~~~~~vive~~----------D~~el~ 384 (457)
T CHL00073 323 NLLEISLARFLIRCGMIVYEIGIPY-------M-DKRYQAAELALLEDTCRKMNVPMPRIVEKP----------DNYNQI 384 (457)
T ss_pred CcHHHHHHHHHHHCCCEEEEEEeCC-------C-ChhhhHHHHHHHHHHhhhcCCCCcEEEeCC----------CHHHHH
Confidence 3677888888888888765443321 1 224444445668888888987333434442 456778
Q ss_pred HHHHhhCCCeeEe
Q 011170 211 AMVKELQSSINIF 223 (492)
Q Consensus 211 ~~i~~~qP~~vi~ 223 (492)
+.+++.+||.+|-
T Consensus 385 ~~i~~~~pDLlIg 397 (457)
T CHL00073 385 QRIRELQPDLAIT 397 (457)
T ss_pred HHHhhCCCCEEEc
Confidence 8999999999984
No 164
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=35.39 E-value=1.6e+02 Score=29.47 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPR 161 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~ 161 (492)
=++=+.++.++++||..++++.-++- +.+ ..+++.=+.+-|..-++.+.+|..|--.
T Consensus 83 ~~~i~~a~~a~~~Gad~v~v~~P~~~-------~~s------------~~~l~~y~~~ia~~~~~pi~iYn~P~~t---- 139 (289)
T PF00701_consen 83 EEAIELARHAQDAGADAVLVIPPYYF-------KPS------------QEELIDYFRAIADATDLPIIIYNNPART---- 139 (289)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTSS-------SCC------------HHHHHHHHHHHHHHSSSEEEEEEBHHHH----
T ss_pred HHHHHHHHHHhhcCceEEEEeccccc-------cch------------hhHHHHHHHHHHhhcCCCEEEEECCCcc----
Confidence 45678899999999999999886542 111 1478888888888889999999886110
Q ss_pred CCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 162 YGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 162 yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
|. .+-.+.+.+|.. ..+|..+ |....++.++.+.++...|+..|+.
T Consensus 140 -g~-----~ls~~~l~~L~~-~~nv~gi----------K~s~~~~~~~~~~~~~~~~~~~v~~ 185 (289)
T PF00701_consen 140 -GN-----DLSPETLARLAK-IPNVVGI----------KDSSGDLERLIQLLRAVGPDFSVFC 185 (289)
T ss_dssp -SS-----TSHHHHHHHHHT-STTEEEE----------EESSSBHHHHHHHHHHSSTTSEEEE
T ss_pred -cc-----CCCHHHHHHHhc-CCcEEEE----------EcCchhHHHHHHHhhhcccCeeeec
Confidence 11 223456777777 6665544 2222356777788888888887764
No 165
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.00 E-value=1.1e+02 Score=28.65 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
|++.+++.++++|+..+++ |++- .|-..+.++.+|++|+++++-+|+
T Consensus 67 ~~~~~~~~~~~~gadgv~v----h~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~ 113 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITV----HPEA---------------------SEHIHRLLQLIKDLGAKAGIVLNP 113 (210)
T ss_pred CHHHHHHHHHHcCCCEEEE----ccCC---------------------chhHHHHHHHHHHcCCcEEEEECC
Confidence 6788999999999999887 3310 133456779999999999998874
No 166
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.97 E-value=1.9e+02 Score=29.60 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc-CCeeEEEeCCCCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKAR-GVDVGLYLSPWDRHDP 160 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~-Glk~G~Y~S~wD~~~~ 160 (492)
-++-++++.|+++||..+++++=+ |... ....++.=|.+-|++- +|.+.+|--|.--
T Consensus 90 ~~ai~~a~~A~~~Gad~vlv~~P~----------y~~~---------~~~~l~~yf~~va~a~~~lPv~iYn~P~~t--- 147 (309)
T cd00952 90 RDTIARTRALLDLGADGTMLGRPM----------WLPL---------DVDTAVQFYRDVAEAVPEMAIAIYANPEAF--- 147 (309)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCc----------CCCC---------CHHHHHHHHHHHHHhCCCCcEEEEcCchhc---
Confidence 457788999999999999998754 1111 1134555555556667 6999999765321
Q ss_pred CCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 161 RYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 161 ~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
|. ++-.+.+.+|. +...|..+ |... +..++.+.++..+++..|+.
T Consensus 148 --g~-----~l~~~~l~~L~-~~pnivgi----------Kdss-d~~~~~~~i~~~~~~~~v~~ 192 (309)
T cd00952 148 --KF-----DFPRAAWAELA-QIPQVVAA----------KYLG-DIGALLSDLAAVKGRMRLLP 192 (309)
T ss_pred --CC-----CCCHHHHHHHh-cCCCEEEE----------EecC-ChHHHHHHHHHcCCCeEEee
Confidence 11 22246677886 55665444 3334 56677777777788887764
No 167
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=34.95 E-value=19 Score=23.06 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHHh
Q 011170 1 MPKLCCFVCLITILFQ 16 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (492)
|+|+.+.++++++|..
T Consensus 7 mKkil~~l~a~~~Lag 22 (25)
T PF08139_consen 7 MKKILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3777777666665554
No 168
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.90 E-value=4.8e+02 Score=26.14 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=40.3
Q ss_pred CCCCCCC-HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 77 FNPLGLD-ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 77 F~p~~fD-~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
|.|--.| -+++++.+.++|++.+-+...=+| -|.+.+.++.+|++|+++.++++.
T Consensus 85 ~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~-----------------------~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 85 YRHYPDDVVELFVEKAAKNGIDIFRIFDALND-----------------------VRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh-----------------------HHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3344444 367888899999888766543333 277999999999999999887763
No 169
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=34.84 E-value=1.4e+02 Score=31.87 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHcCCeeEEEeC-------CCCCCCCCCCC-CchhhHHHHHHHHHHHhccCCceeE------EecCCCC
Q 011170 131 GDVVQELVNAAKARGVDVGLYLS-------PWDRHDPRYGH-DLQYNEYYLAQLQELLTRYGDVREI------WFDGAKG 196 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S-------~wD~~~~~yg~-~~~y~~~~~~Ql~EL~t~YG~i~~l------WfDg~~~ 196 (492)
-|. .++++++|+.|+|..+-.+ .||-....|.. ...+.+-+...+.+-+.++|=-..+ |++-.+.
T Consensus 81 fD~-~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~ 159 (384)
T smart00812 81 FDP-EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYA 159 (384)
T ss_pred CCH-HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccc
Confidence 454 8999999999999999865 34433222221 1122222334444444555421122 3322211
Q ss_pred C----------CCCCcccc---HHHHHHHHHhhCCCeeEecC
Q 011170 197 S----------NAPNMSYY---FTDWFAMVKELQSSINIFSD 225 (492)
Q Consensus 197 ~----------~~~~~~~~---~~~~~~~i~~~qP~~vi~~~ 225 (492)
. ......|. +.++.+++.+|.|+.+ +.|
T Consensus 160 ~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~l-WfD 200 (384)
T smart00812 160 GPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLL-WFD 200 (384)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhcCCCceE-EEe
Confidence 0 00112333 6788899999999554 555
No 170
>PLN02877 alpha-amylase/limit dextrinase
Probab=34.81 E-value=1.7e+02 Score=35.07 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCCeeEE---EeCCC-----------CCCCCCC-------C--------CC-----chhhHHHHHHHHH
Q 011170 133 VVQELVNAAKARGVDVGL---YLSPW-----------DRHDPRY-------G--------HD-----LQYNEYYLAQLQE 178 (492)
Q Consensus 133 iV~El~~Acrk~Glk~G~---Y~S~w-----------D~~~~~y-------g--------~~-----~~y~~~~~~Ql~E 178 (492)
=+++|+++|+++||++-+ |-|.. |...|.| | ++ ....+|+.+-++-
T Consensus 467 efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~y 546 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLN 546 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHH
Confidence 379999999999999965 43321 1111211 1 11 1334778888888
Q ss_pred HHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhC--------CCeeEec
Q 011170 179 LLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQ--------SSINIFS 224 (492)
Q Consensus 179 L~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~q--------P~~vi~~ 224 (492)
.++.|| ||++=||-+.-.+. -.+.++.+.++++. |+++++.
T Consensus 547 W~~ey~-VDGFRFDlmg~i~~----~tm~~~~~~L~~i~~~~~~~dg~~i~lyG 595 (970)
T PLN02877 547 WAVNYK-VDGFRFDLMGHLMK----RTMVRAKDALQSLTLERDGVDGSSIYLYG 595 (970)
T ss_pred HHHHhC-CCEEEEEccccccH----HHHHHHHHHHHHHhhhhcccCCCceEEEE
Confidence 999998 79999996643321 13567777888875 6677654
No 171
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=65 Score=35.29 Aligned_cols=66 Identities=30% Similarity=0.650 Sum_probs=47.1
Q ss_pred CcEEEEEeeecC-CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHH-H
Q 011170 96 VSLMILTAKHHD-GFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYY-L 173 (492)
Q Consensus 96 akyvvlTaKHHD-GF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~-~ 173 (492)
|.+||.|+||.| -=.+|-|+...|+|..-|| ++-+ ++|-.+-+|+-- +-.+|. .
T Consensus 205 AD~vvVtsKhNdD~QyiWESdan~FsvseDpr----g~tL--------~RGt~ItL~Lke------------EA~dyLE~ 260 (785)
T KOG0020|consen 205 ADRVVVTSKHNDDSQYIWESDANSFSVSEDPR----GNTL--------GRGTEITLYLKE------------EAGDYLEE 260 (785)
T ss_pred cceEEEEeccCCccceeeeccCcceeeecCCC----CCcc--------cCccEEEEEehh------------hhhhhcch
Confidence 679999999985 5569999999999887554 3433 367777777641 112232 3
Q ss_pred HHHHHHHhccCC
Q 011170 174 AQLQELLTRYGD 185 (492)
Q Consensus 174 ~Ql~EL~t~YG~ 185 (492)
.-|+||..+|..
T Consensus 261 dtlkeLvkkYSq 272 (785)
T KOG0020|consen 261 DTLKELVKKYSQ 272 (785)
T ss_pred hHHHHHHHHHHH
Confidence 578999999985
No 172
>TIGR03356 BGL beta-galactosidase.
Probab=34.52 E-value=66 Score=34.61 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-----C
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHD-----P 160 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~-----~ 160 (492)
+=++++|++|++.+=+.-.-+- +.|.-...+|- ..-+...+++++|+++||++.+-+++||.-. .
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsr---i~p~g~~~~n~-------~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~g 127 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPR---IFPEGTGPVNP-------KGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRG 127 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhh---cccCCCCCcCH-------HHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcC
Confidence 4478999999987755432211 11210011110 1137888999999999999999999877311 1
Q ss_pred CCCCCchhhHHHHHHHHHHHhccCCceeEEe
Q 011170 161 RYGHDLQYNEYYLAQLQELLTRYGDVREIWF 191 (492)
Q Consensus 161 ~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWf 191 (492)
.+. ..+..+++..=.+.+.++||+....|.
T Consensus 128 Gw~-~~~~~~~f~~ya~~~~~~~~d~v~~w~ 157 (427)
T TIGR03356 128 GWL-NRDTAEWFAEYAAVVAERLGDRVKHWI 157 (427)
T ss_pred CCC-ChHHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 122 234455555556778888887444443
No 173
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=34.11 E-value=81 Score=32.96 Aligned_cols=67 Identities=7% Similarity=0.239 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCcEEEEEeeec---------CCcccCCCCCCCCc---------------------c--ccCCCCCCCCC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH---------DGFCLWPSKFTEHS---------------------V--AHSPWKHGRGD 132 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH---------DGF~lWpS~~t~~~---------------------v--~~sp~~~~krD 132 (492)
++..+.++++...-+|+++-|| +.||+...+.-.-+ . ....+ .+..+
T Consensus 78 ~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~gd~e 156 (335)
T PRK13363 78 ERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY-PVVPE 156 (335)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC-CCCHH
Confidence 5778889999999999999999 77777766543211 0 00111 13468
Q ss_pred hHHHHHHHHHHcCCeeEEEe
Q 011170 133 VVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 133 iV~El~~Acrk~Glk~G~Y~ 152 (492)
+..++++.+++.|+.+..-.
T Consensus 157 LA~~I~~~l~~~G~d~~~~~ 176 (335)
T PRK13363 157 LARHMIRRLVDDGFDITALD 176 (335)
T ss_pred HHHHHHHHHHHcCCCeeeec
Confidence 99999999999999987544
No 174
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.94 E-value=2.8e+02 Score=27.01 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEe-cCCCCCCCCCccccHHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWF-DGAKGSNAPNMSYYFTDW 209 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWf-Dg~~~~~~~~~~~~~~~~ 209 (492)
-|-+.+.++.++++|+.+.++++..-.. .++.-+..++-+.+..+|. +.+-+ |-.... ...+..++
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~----~P~~v~~l 180 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFGC--------KTDPEYVLEVAKALEEAGA-DEISLKDTVGLA----TPEEVAEL 180 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCC--------CCCHHHHHHHHHHHHHcCC-CEEEechhcCCc----CHHHHHHH
Confidence 4678899999999999999998643320 1222223455555667786 44433 422111 12245677
Q ss_pred HHHHHhhCCCeeE
Q 011170 210 FAMVKELQSSINI 222 (492)
Q Consensus 210 ~~~i~~~qP~~vi 222 (492)
++.+++.-|++.+
T Consensus 181 i~~l~~~~~~~~~ 193 (265)
T cd03174 181 VKALREALPDVPL 193 (265)
T ss_pred HHHHHHhCCCCeE
Confidence 7888887776443
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.70 E-value=51 Score=32.76 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
.+.++++++.|++++++- |...++...+.-...+ -.+-++++++.++++|+++++=.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLA-----GYDVYYEEHDEETRRR------FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHhCCCEEEec-----CcccccCcCCHHHHHH------HHHHHHHHHHHHHHcCCEEEEee
Confidence 688999999999998762 2111111111100000 02567899999999999999854
No 176
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=33.26 E-value=3.9e+02 Score=30.73 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcEEEEEeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHH-HHHcCCeeEEEeCC
Q 011170 85 NQWVNTAAEAGVSLMILTAKH-HDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNA-AKARGVDVGLYLSP 154 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKH-HDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~A-crk~Glk~G~Y~S~ 154 (492)
++.++.+|+.|..-|+|-+-+ .||=.+|+|.|-++ +.-|-+ -|+.-.++=. ..++|+++-.-+-+
T Consensus 337 ~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~--~~lp~r---~d~f~~~aw~l~~r~~v~v~AWmp~ 403 (671)
T PRK14582 337 DVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN--RLLPMR---ADLFNRVAWQLRTRAGVNVYAWMPV 403 (671)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc--cccccc---cCCcCHHHHHHHHhhCCEEEEeccc
Confidence 468889999999999999954 47888999988776 334434 4555554433 55779998877654
No 177
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.07 E-value=2.1e+02 Score=28.95 Aligned_cols=201 Identities=14% Similarity=0.173 Sum_probs=105.0
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHD 165 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~ 165 (492)
.=++.++++|++.+.+...=.|-++.- ++..++ ..--+.++++++.||++|+++.++.+. +..| |..+
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~-------~~~~t~--~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~~~-~r~~ 145 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTE-------QLRKTP--EEHFADIREVIEYAIKNGIEVNIYLED--WSNG-MRDS 145 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHH-------HHCcCH--HHHHHHHHHHHHHHHhCCCEEEEEEEe--CCCC-CcCC
Confidence 347889999999998887444433321 121221 111355788899999999999999883 2222 2222
Q ss_pred chhhHHHHHHHHHHHhccCCceeE-EecCCCCCCCCCccccHHHHHHHHHhhCCCeeEecCCCCCcccccCCCCCCCcce
Q 011170 166 LQYNEYYLAQLQELLTRYGDVREI-WFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTC 244 (492)
Q Consensus 166 ~~y~~~~~~Ql~EL~t~YG~i~~l-WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~d~rw~gne~G~~~~~~ 244 (492)
+ +++...++++. .+|. +.+ --|...-. ......+++..+++.-|+.-+--++. |..|.+....
T Consensus 146 ~---~~~~~~~~~~~-~~G~-~~i~l~DT~G~~----~P~~v~~l~~~l~~~~~~~~i~~H~H-------nd~Gla~AN~ 209 (280)
T cd07945 146 P---DYVFQLVDFLS-DLPI-KRIMLPDTLGIL----SPFETYTYISDMVKRYPNLHFDFHAH-------NDYDLAVANV 209 (280)
T ss_pred H---HHHHHHHHHHH-HcCC-CEEEecCCCCCC----CHHHHHHHHHHHHhhCCCCeEEEEeC-------CCCCHHHHHH
Confidence 2 44544455554 4675 444 44533211 11234555666666556544321111 2223221100
Q ss_pred eeeccCCccccCCCccccccccCCCCCCCCccccceeecCCCCCCCCCCCCCCHHHHHHHHHhhhccCceEEEccCCCCC
Q 011170 245 WSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRKGWFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTT 324 (492)
Q Consensus 245 w~~~~~~~~~~G~~~~~~~~~~g~~~~~~w~P~E~d~~i~~~Wfy~~~~~~ks~~~Li~~l~~~V~rngnlLLNigP~~d 324 (492)
. .-+. .|-. ..|.++.+ =| ....--++++|+..|....+
T Consensus 210 l----------------aA~~----aGa~----~vd~s~~G-lG--e~aGN~~~E~~v~~L~~~~g-------------- 248 (280)
T cd07945 210 L----------------AAVK----AGIK----GLHTTVNG-LG--ERAGNAPLASVIAVLKDKLK-------------- 248 (280)
T ss_pred H----------------HHHH----hCCC----EEEEeccc-cc--ccccCccHHHHHHHHHHhcC--------------
Confidence 0 0001 1111 23444431 11 22223468888887743322
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccccccccc
Q 011170 325 GLISETDVQRLREFGTAIDTIFSKNLAENCFV 356 (492)
Q Consensus 325 G~Ip~~~~~~L~e~G~wl~~~f~~~la~~a~v 356 (492)
.-...+.+.|.++.++++++.+.++..++++
T Consensus 249 -~~t~idl~~l~~~~~~v~~~~g~~~~~~~pi 279 (280)
T cd07945 249 -VKTNIDEKRLNRASRLVETFSGKRIPANKPI 279 (280)
T ss_pred -CCcCcCHHHHHHHHHHHHHHhCcCCCCCCCc
Confidence 1123668899999999999888877766553
No 178
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=32.54 E-value=1e+02 Score=33.01 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCHHHH-HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-EeCCC
Q 011170 82 LDANQW-VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL-YLSPW 155 (492)
Q Consensus 82 fD~dqW-~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~-Y~S~w 155 (492)
.|+..+ ++.+.++|+.++++-+. +..+-+.+..+++|++|+++|+ =+++.
T Consensus 236 ~Di~~~vv~~~a~aGAD~vTVH~e------------------------a~~~ti~~ai~~akk~GikvgVD~lnp~ 287 (391)
T PRK13307 236 LDTGNLEARMAADATADAVVISGL------------------------APISTIEKAIHEAQKTGIYSILDMLNVE 287 (391)
T ss_pred cChhhHHHHHHHhcCCCEEEEecc------------------------CCHHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 467777 77888888888776322 0135688999999999999999 66654
No 179
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.40 E-value=39 Score=33.63 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=38.1
Q ss_pred HHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC----------CCCChHHHHHHHHHHcCCeeEEE
Q 011170 87 WVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH----------GRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~----------~krDiV~El~~Acrk~Glk~G~Y 151 (492)
.+++|++|||.-|=|....-|.+..=.....+|.+.+..... -..|-.++|.+.||+.||.|...
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~st 75 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFST 75 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 378999999999999988877766433222222222110000 11467789999999999998764
No 180
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=32.39 E-value=1.2e+02 Score=32.12 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
..|+.+.++.++++|++.|-+ |.+. +||-.... ..+...++++.++++++||++....
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~---~~~d--l~P~~~~~---------~e~~~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTF---HDDD--LIPFGAPP---------QERDQIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEe---cccc--cCCCCCCh---------hHHHHHHHHHHHHHHHhCCeEEEee
Confidence 379999999999999998865 3222 33322110 0112458999999999999976543
No 181
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=32.31 E-value=38 Score=35.47 Aligned_cols=93 Identities=22% Similarity=0.364 Sum_probs=55.7
Q ss_pred CCCCCCCHHHH---HHHHHHcCCcEEEEEeeecCCcccCC---CCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 77 FNPLGLDANQW---VNTAAEAGVSLMILTAKHHDGFCLWP---SKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 77 F~p~~fD~dqW---~~~ak~AGakyvvlTaKHHDGF~lWp---S~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
++|+.++.+.| ++++|++|+..|-|. ..-|. -.-..|+ -+.+-.+++.|+++||++.+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~------~~~W~~lEP~eG~yd----------F~~lD~~l~~a~~~Gi~viL 65 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIG------EFSWSWLEPEEGQYD----------FSWLDRVLDLAAKHGIKVIL 65 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-------CCEHHHH-SBTTB-------------HHHHHHHHHHHCTT-EEEE
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEE------EechhhccCCCCeee----------cHHHHHHHHHHHhccCeEEE
Confidence 45777776666 678899999998763 12231 1112221 46789999999999999988
Q ss_pred EeCC---CCCC---CCC------------CC-------CCchhhHHHHHHHHHHHhccCC
Q 011170 151 YLSP---WDRH---DPR------------YG-------HDLQYNEYYLAQLQELLTRYGD 185 (492)
Q Consensus 151 Y~S~---wD~~---~~~------------yg-------~~~~y~~~~~~Ql~EL~t~YG~ 185 (492)
-.+. -+|- +|. +| +.+.|.+++..-+++|..+|++
T Consensus 66 ~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~ 125 (374)
T PF02449_consen 66 GTPTAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD 125 (374)
T ss_dssp EECTTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 6642 1120 111 11 1247788888888999999986
No 182
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.16 E-value=4e+02 Score=24.66 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHH-HHHHhccCCceeEEecCCCCCCCCCccccHHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQL-QELLTRYGDVREIWFDGAKGSNAPNMSYYFTDW 209 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql-~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~ 209 (492)
-|++.++.+.|.+.|.++.++=+. ++. .+++ ..|..+|..+..+-..-+.- ..-+-+++
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~-----------~~~----~~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i 93 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGS-----------EEV----LEKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAI 93 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC-----------HHH----HHHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHH
Confidence 599999999999999999887652 222 2333 34556787776663322111 11245788
Q ss_pred HHHHHhhCCCeeEecC
Q 011170 210 FAMVKELQSSINIFSD 225 (492)
Q Consensus 210 ~~~i~~~qP~~vi~~~ 225 (492)
.+.|++.+||+|+..-
T Consensus 94 ~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 94 INRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHcCCCEEEEEC
Confidence 8999999999987653
No 183
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.03 E-value=98 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE-eCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY-LSP 154 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y-~S~ 154 (492)
.+++.++++|+.++++-+. + . .+-+.++.++||++|+++++= .++
T Consensus 68 ~~~~~~~~aGad~i~~h~~-------------------~---~--~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGA-------------------A---P--LSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEEEee-------------------C---C--HHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4579999999998887421 0 0 145688999999999999985 554
No 184
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=31.59 E-value=80 Score=27.79 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
-...++.++++|.+.+||--. || .| .--|+.|++++|+.||+|
T Consensus 72 G~~la~ra~~~gi~~vvfDrg---g~---------------~Y----hGrv~A~a~~aRe~Gl~F 114 (114)
T TIGR00060 72 GKLVAERLKEKGIKDVVFDRG---GY---------------KY----HGRVAALAEAAREAGLNF 114 (114)
T ss_pred HHHHHHHHHHCCCCEEEEeCC---CC---------------cc----hHHHHHHHHHHHHhCCCC
Confidence 456889999999999985421 22 11 246999999999999987
No 185
>PLN02361 alpha-amylase
Probab=31.52 E-value=99 Score=33.12 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCcEEEEEeeec--CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH--DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH--DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
.+-++-++++|+..|-|+--.. .+.-.|+..+. ++. +. -|..+=+++|+++|+++||++-+
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y--~~~-~~--~Gt~~el~~li~~~h~~gi~vi~ 94 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLY--SLN-SA--YGSEHLLKSLLRKMKQYNVRAMA 94 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCccccc--ccC-cc--cCCHHHHHHHHHHHHHcCCEEEE
Confidence 3446678999999998876432 22122333322 222 22 23357789999999999999866
No 186
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=31.51 E-value=43 Score=36.29 Aligned_cols=93 Identities=16% Similarity=0.352 Sum_probs=54.0
Q ss_pred HHHHHHcCCcEEEEEeeecCCcc-cCCCC-CCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CCCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFC-LWPSK-FTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH---DPRY 162 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~-lWpS~-~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~~y 162 (492)
++++|++|++..=+.-- .+ +.|.- ....|-. .-+--.+++++|+++||++.+-+..||-- +. +
T Consensus 64 i~l~~~lg~~~yRfsi~----W~Ri~P~g~~g~~n~~-------~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ 131 (455)
T PF00232_consen 64 IALMKELGVNAYRFSIS----WSRIFPDGFEGKVNEE-------GLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-Y 131 (455)
T ss_dssp HHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HH-------HHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-H
T ss_pred HHHHHhhccceeeeecc----hhheeecccccccCHh-------HhhhhHHHHHHHHhhccceeeeeeecccccceee-c
Confidence 78999999987755321 00 22221 1111110 13567899999999999999999988731 11 2
Q ss_pred CC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 163 GH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 163 g~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
|. ..+..+++..=.+-+.++||+..-+|+=
T Consensus 132 ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T 163 (455)
T PF00232_consen 132 GGWLNRETVDWFARYAEFVFERFGDRVKYWIT 163 (455)
T ss_dssp TGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCcceEEe
Confidence 31 2344455555557778888986677765
No 187
>PLN02635 disproportionating enzyme
Probab=31.21 E-value=1.4e+02 Score=33.28 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=45.0
Q ss_pred cCceEEEEEecccccCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHcCCcEEEEEeeecCCc--ccCCCCCCCCc
Q 011170 48 QRELIMFLHFGVNTFTDSEWGTGNENPEIFNPLGLD--ANQWVNTAAEAGVSLMILTAKHHDGF--CLWPSKFTEHS 120 (492)
Q Consensus 48 ~~kfG~FiHwG~~t~~~~EW~~g~~~p~~F~p~~fD--~dqW~~~ak~AGakyvvlTaKHHDGF--~lWpS~~t~~~ 120 (492)
+.+-|+.+| ++|+++ .||-|+ |. +.++++.++++|++++-+--=|..|+ ..=+|.|+..|
T Consensus 27 ~R~~Gvll~--l~SLps-~~GIGD----------fg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 27 RRRAGILLH--PTSLPG-PYGIGD----------LGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred CcceEEEEc--cccCCC-CCCCcc----------hHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 456799999 678874 588775 64 35799999999999999887788776 23366666554
No 188
>PLN02433 uroporphyrinogen decarboxylase
Probab=31.10 E-value=5.2e+02 Score=26.69 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhcc----CCceeEEecCCCCCCCCCccccHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRY----GDVREIWFDGAKGSNAPNMSYYFT 207 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~Y----G~i~~lWfDg~~~~~~~~~~~~~~ 207 (492)
|++.++++++.+.|..+...+=+|. ..-....|.+|..+-++++++.. +.+..+-|-.+. .
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~----~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~-----------~ 243 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWA----GHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGS-----------G 243 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcc----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC-----------H
Confidence 4466788888889998765543322 12234588888887777776643 222233343221 1
Q ss_pred HHHHHHHhhCCCee
Q 011170 208 DWFAMVKELQSSIN 221 (492)
Q Consensus 208 ~~~~~i~~~qP~~v 221 (492)
.+++.++++..+++
T Consensus 244 ~~~~~~~~~~~~~i 257 (345)
T PLN02433 244 GLLERLAGTGVDVI 257 (345)
T ss_pred HHHHHHHhcCCCEE
Confidence 34566777766754
No 189
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=31.05 E-value=2.2e+02 Score=29.58 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=46.8
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC---CCCChHHHHHHHHHHc-CC-eeEEEeCCCCCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH---GRGDVVQELVNAAKAR-GV-DVGLYLSPWDRH 158 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~---~krDiV~El~~Acrk~-Gl-k~G~Y~S~wD~~ 158 (492)
|+.+++||+..|=|-+-|.--++-+=|..++.-.+. |-| .+-.++.|+++|+|+. |- .+|+=+|..|+.
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~--yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDE--YGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCc--CCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 346677899999999888555555555544432221 111 2457889999999986 44 688889988764
No 190
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.92 E-value=3.1e+02 Score=27.99 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPR 161 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~ 161 (492)
-++-++++.|+++|++.+++++ +|=. +.+..-+..-|..-|.+-++.+.+|--|--
T Consensus 86 ~eai~lak~a~~~Gad~il~v~--------------PyY~-----k~~~~gl~~hf~~ia~a~~lPvilYN~P~~----- 141 (299)
T COG0329 86 AEAIELAKHAEKLGADGILVVP--------------PYYN-----KPSQEGLYAHFKAIAEAVDLPVILYNIPSR----- 141 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEeC--------------CCCc-----CCChHHHHHHHHHHHHhcCCCEEEEeCccc-----
Confidence 5678899999999999998863 3211 122357788888888888999999987521
Q ss_pred CCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCC-CeeEec
Q 011170 162 YGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQS-SINIFS 224 (492)
Q Consensus 162 yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP-~~vi~~ 224 (492)
.| .++-.+++.+|.. .++|..+ |...-+..++.++++.... +..+++
T Consensus 142 tg-----~~l~~e~i~~la~-~~nivgi----------Kd~~gd~~~~~~~~~~~~~~~f~v~~ 189 (299)
T COG0329 142 TG-----VDLSPETIARLAE-HPNIVGV----------KDSSGDLDRLEEIIAALGDRDFIVLS 189 (299)
T ss_pred cC-----CCCCHHHHHHHhc-CCCEEEE----------EeCCcCHHHHHHHHHhcCccCeeEEe
Confidence 11 1234577888888 6776554 2223356666666655554 566653
No 191
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=30.90 E-value=74 Score=31.07 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 80 LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 80 ~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
+=+||+| ++.+.+||++++| || -+-.|++++|+++||.+
T Consensus 71 TVL~~~q-~~~a~~aGa~fiV-----------------------sP------~~~~ev~~~a~~~~ip~ 109 (211)
T COG0800 71 TVLNPEQ-ARQAIAAGAQFIV-----------------------SP------GLNPEVAKAANRYGIPY 109 (211)
T ss_pred cccCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHhCCCcc
Confidence 5588888 4677899999987 44 34578999999999875
No 192
>PLN02899 alpha-galactosidase
Probab=30.71 E-value=2.6e+02 Score=31.72 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCC------CCCCC--------------------------------CCC---C--chh
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWD------RHDPR--------------------------------YGH---D--LQY 168 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD------~~~~~--------------------------------yg~---~--~~y 168 (492)
+=++.|++-++..|||||+|...-- .+.|- |+. + ...
T Consensus 113 ~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~ 192 (633)
T PLN02899 113 KGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLGA 192 (633)
T ss_pred CCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCCCCcccccccccc
Confidence 4589999999999999999976421 11110 000 0 011
Q ss_pred hHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeE
Q 011170 169 NEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINI 222 (492)
Q Consensus 169 ~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 222 (492)
.+-|.+.+.++...+| ||.|=.|...+... ..-.+.++-+.|++..-.+++
T Consensus 193 g~a~~~Sla~tfAsWG-VDyLKyD~c~~~~~--~~~ey~~ms~AL~aTGRPIvy 243 (633)
T PLN02899 193 GKAFLRSLYDQYAEWG-VDFVKHDCVFGDDF--DLEEITYVSEVLKELDRPIVY 243 (633)
T ss_pred hhhhhHHHHHHHHHhC-CCEEEEcCCCCCCC--ChHHHHHHHHHHHHhCCCeEE
Confidence 1234466667777788 58888886544221 112356777777775444443
No 193
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.68 E-value=59 Score=31.99 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=30.5
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCC
Q 011170 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDG 108 (492)
Q Consensus 75 ~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDG 108 (492)
+.|..+..++.+|++.+.+.|++.+++|.-..||
T Consensus 139 ~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dG 172 (232)
T PRK13586 139 RGWKEKSMEVIDGIKKVNELELLGIIFTYISNEG 172 (232)
T ss_pred cCCeeCCCCHHHHHHHHHhcCCCEEEEecccccc
Confidence 3455577899999999999999999999999999
No 194
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=30.54 E-value=72 Score=27.09 Aligned_cols=70 Identities=10% Similarity=0.190 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc
Q 011170 70 GNENPEIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKAR 144 (492)
Q Consensus 70 g~~~p~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~ 144 (492)
|.--|..+..+++-.++.+++++++|.++.+.--|-+=+ .-|.+. .-. +..+ .++|..+++.+++..++.
T Consensus 20 GRrvpk~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr-~~w~~~-g~v-ive~--~~~K~~~lk~ia~~lr~~ 89 (93)
T COG1400 20 GRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPR-LWWEIS-GRV-IVES--NGKKSKLLKAIAAKLREK 89 (93)
T ss_pred ccccchhhcccCCCHHHHHHHHHHcCCCeeechhhcCCC-chhhhC-ceE-EEec--CccHhHHHHHHHHHHHHh
Confidence 344678888999999999999999999998655555555 234443 222 2222 367899999999888764
No 195
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=30.16 E-value=83 Score=31.76 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHH
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAA 141 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Ac 141 (492)
-+.+++.+|+..+.+.|++.+++|.-.-||-. .|+..+++++++++|
T Consensus 160 ~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl----------------~G~d~el~~~l~~~~ 206 (262)
T PLN02446 160 FSDLAVDEETLEFLAAYCDEFLVHGVDVEGKR----------------LGIDEELVALLGEHS 206 (262)
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcc----------------cCCCHHHHHHHHhhC
Confidence 47899999999999999999999999999933 255568888888875
No 196
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.14 E-value=5.5e+02 Score=25.77 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc-CCeeEEEeCCCCCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKAR-GVDVGLYLSPWDRHDPR 161 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~-Glk~G~Y~S~wD~~~~~ 161 (492)
++-+.++.++++||..++++.=+. ... ....++.=|.+-|++- ++.+.+|.-|.--
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~P~y----------~~~---------~~~~i~~~~~~v~~a~~~lpi~iYn~P~~t---- 140 (288)
T cd00954 84 ESQELAKHAEELGYDAISAITPFY----------YKF---------SFEEIKDYYREIIAAAASLPMIIYHIPALT---- 140 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCC----------CCC---------CHHHHHHHHHHHHHhcCCCCEEEEeCcccc----
Confidence 456788899999999999885331 111 1135666666667777 8999999765311
Q ss_pred CCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 162 YGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 162 yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
|. .+-.+.+.+|.. ..+|..+ |...-+..++.++++...++..|+.
T Consensus 141 -g~-----~l~~~~~~~L~~-~pnivgi----------K~s~~d~~~~~~~~~~~~~~~~v~~ 186 (288)
T cd00954 141 -GV-----NLTLEQFLELFE-IPNVIGV----------KFTATDLYDLERIRAASPEDKLVLN 186 (288)
T ss_pred -CC-----CCCHHHHHHHhc-CCCEEEE----------EeCCCCHHHHHHHHHhCCCCcEEEE
Confidence 11 112356677774 6665443 2122245556666665555776663
No 197
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.97 E-value=71 Score=24.45 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
...|++.++.+++.|++.+.+|= ++.. .-+-++.+.|+++||++-
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTD---------------h~~~---------~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITD---------------HGNL---------FGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEee---------------CCcc---------cCHHHHHHHHHHcCCeEE
Confidence 46799999999999999998863 2211 113478888999999873
No 198
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=29.71 E-value=73 Score=33.06 Aligned_cols=70 Identities=27% Similarity=0.390 Sum_probs=42.7
Q ss_pred HHHHHHcCCcEEEEEeeecCCccc--CCCCCCCCccccCCCCC---CCCChHHHHHHHHHHc---CCeeEEEeCCCCCCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCL--WPSKFTEHSVAHSPWKH---GRGDVVQELVNAAKAR---GVDVGLYLSPWDRHD 159 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~l--WpS~~t~~~v~~sp~~~---~krDiV~El~~Acrk~---Glk~G~Y~S~wD~~~ 159 (492)
|+.|++||+..|=|-+-| ||-+ +=|..++. +.=-|-| .+-=++.|+++|+|+. +..+|+=+|+.|...
T Consensus 155 A~~A~~AGfDGVEIH~ah--GyLl~qFLSp~~N~--RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAH--GYLLSQFLSPLTNR--RTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHTT-SEEEEEEST--TSHHHHHHSTTT-----SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHhccCeEeecccc--hhhhhheeeeccCC--CchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 456789999999999988 5532 33333332 1111211 0123678888888887 566899999988765
Q ss_pred CC
Q 011170 160 PR 161 (492)
Q Consensus 160 ~~ 161 (492)
..
T Consensus 231 ~g 232 (341)
T PF00724_consen 231 GG 232 (341)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 199
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=29.64 E-value=2.2e+02 Score=29.55 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCeeEEEeCCCC-----------CC----------CCCC-CC------CchhhHHHHHHHHHHHhccCCce
Q 011170 136 ELVNAAKARGVDVGLYLSPWD-----------RH----------DPRY-GH------DLQYNEYYLAQLQELLTRYGDVR 187 (492)
Q Consensus 136 El~~Acrk~Glk~G~Y~S~wD-----------~~----------~~~y-g~------~~~y~~~~~~Ql~EL~t~YG~i~ 187 (492)
+-+++.|+.|-++-.|+|.-. |. ++.+ |. .+++.+++.+++..|+.+ | .+
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~k-G-fD 162 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQ-G-FD 162 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHc-C-CC
Confidence 445568889999999999621 11 0112 11 235667777787777654 5 47
Q ss_pred eEEecCCCCCC-----CC---Cccc----cHHHHHHHHHhhCCCeeEe
Q 011170 188 EIWFDGAKGSN-----AP---NMSY----YFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 188 ~lWfDg~~~~~-----~~---~~~~----~~~~~~~~i~~~qP~~vi~ 223 (492)
++.+|.--.-. .. .+.- ...++.+.+|+..|+++|.
T Consensus 163 GvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 163 GVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred eEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 88888542210 00 0000 1123334458889999875
No 200
>PF07461 NADase_NGA: Nicotine adenine dinucleotide glycohydrolase (NADase); InterPro: IPR010900 This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide [].; PDB: 3PNT_C.
Probab=29.63 E-value=18 Score=37.59 Aligned_cols=102 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeecC-CCCCCCCceE--EEecccCCceeeeEEEEEeecC-------CCceeeEEEEEE-CC-EEE-ee
Q 011170 372 ENVLDDDHLRTYWAPR-DGDGISDDHW--IEIRAADEGLRFNVIRIQEAIG-------LGQRIKRHEIFV-DG-KLV-AE 438 (492)
Q Consensus 372 ~~~~Dg~~~~TyWa~~-~~~~~~~~~w--i~l~~~~~~~~fn~v~l~E~i~-------~GQRV~~~~v~~-dG-~~v-~~ 438 (492)
-+++||++. |-|.-. ++... ++- ++|.. +..|+.|.|-.--. ...||++-.|.. +| +.| .+
T Consensus 70 ~n~lDg~~~-TsW~En~~G~GV--GE~Ls~kf~s---Pi~i~~IqIiNGfassKe~y~kNNRIaKlkI~~~~Gd~lVl~q 143 (446)
T PF07461_consen 70 MNTLDGDMK-TSWCENSPGGGV--GETLSYKFAS---PIKIDRIQIINGFASSKENYYKNNRIAKLKITFYNGDKLVLVQ 143 (446)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeecCCce-eeEeecCCCCCc--ceEEEEEecC---ceeeceEEEEecCCchhhhHhhhccceeeeeeEecCceEEEEE
Confidence 389999999 999844 22221 222 77777 67999998754322 347999999976 76 222 11
Q ss_pred eeee--cc-e--EEEeeecCceeeeEEEEEeecc-C----CCceEeEEEEEe
Q 011170 439 GTTV--GH-K--KLHRLENGVIDGHVVRIKIKES-R----AVPLISSIGLHF 480 (492)
Q Consensus 439 gttI--G~-k--ri~r~~~~~V~~~~lRi~I~~s-~----~~P~I~~~~vy~ 480 (492)
--+. +| + ..+-| +..+..++|.|.|++- + ..-+|+++..++
T Consensus 144 ~~eLkD~~t~kp~~Ie~-~kk~~vd~i~i~IqeV~kGtn~~~~alsEvtF~n 194 (446)
T PF07461_consen 144 KVELKDTYTKKPQHIEL-DKKFDVDRIDIEIQEVYKGTNKNITALSEVTFGN 194 (446)
T ss_dssp ----------------------------------------------------
T ss_pred EEEeccccccCcceeee-cceeeceeEEEEEeeeecCccccccchhhhhhhh
Confidence 1112 23 1 23446 3378889999999852 2 346778777664
No 201
>PLN00196 alpha-amylase; Provisional
Probab=29.28 E-value=1.1e+02 Score=33.09 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCcEEEEEeeec--CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 85 NQWVNTAAEAGVSLMILTAKHH--DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHH--DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
.+=++-++++|+.-|-|+--.+ .+--.|+..+ |++..+. -|..+-.++|+++|+++|||+.+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~--y~ld~~~--fGt~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRL--YDLDASK--YGNEAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcccc--CCCCccc--CCCHHHHHHHHHHHHHCCCEEEE
Confidence 3446788999999998875332 1111222222 2343222 23457789999999999999855
No 202
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.98 E-value=53 Score=32.05 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
-+++++.|++.|++++.+.+-.+ +-. .+.. -.|+ --.|-++++++-++++||++++=.
T Consensus 86 ~~~~i~~a~~lg~~~i~~~~g~~------~~~-~~~~---~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 86 VALAIAYARALGCPQVNCLAGKR------PAG-VSPE---EARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHhCCCEEEECcCCC------CCC-CCHH---HHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34789999999999987643211 000 0000 0000 013778999999999999999843
No 203
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.97 E-value=2.6e+02 Score=29.43 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC---CCCChHHHHHHHHHHc-C--CeeEEEeCCCCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH---GRGDVVQELVNAAKAR-G--VDVGLYLSPWDR 157 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~---~krDiV~El~~Acrk~-G--lk~G~Y~S~wD~ 157 (492)
|+.+++||+..|=|-+-|.--++-+=|..++.--+ -|.| .+..++.|+++|.|+. | +.+|+=+|+++.
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtD--eYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRAD--GYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 45677899999999998855555455544432111 1111 2468999999999997 4 789999998753
No 204
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=28.93 E-value=1e+02 Score=32.81 Aligned_cols=73 Identities=29% Similarity=0.538 Sum_probs=43.8
Q ss_pred CCCHHHHH---HHHHHcCCcEEEEEeeecCCcccCCCCCCCCccc-cCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 011170 81 GLDANQWV---NTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVA-HSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWD 156 (492)
Q Consensus 81 ~fD~dqW~---~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~-~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD 156 (492)
.+..+.|. ++|+++|. |||+| |+. ..+|. .+-|..+.+|+++.| |-|++|. |
T Consensus 13 ~yt~~dw~~di~~A~~~GI----------DgFaL--------Nig~~d~~~---~~~l~~a~~AA~~~g--FKlf~Sf-D 68 (386)
T PF03659_consen 13 NYTQEDWEADIRLAQAAGI----------DGFAL--------NIGSSDSWQ---PDQLADAYQAAEAVG--FKLFFSF-D 68 (386)
T ss_pred CCCHHHHHHHHHHHHHcCC----------CEEEE--------ecccCCccc---HHHHHHHHHHHHhcC--CEEEEEe-c
Confidence 35666665 56666655 66665 111 22333 488999999999999 6666663 2
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhccCC
Q 011170 157 RHDPRYGHDLQYNEYYLAQLQELLTRYGD 185 (492)
Q Consensus 157 ~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~ 185 (492)
..-. +... .++|..++.+|+.
T Consensus 69 ~~~~--~~~~------~~~~~~~i~~y~~ 89 (386)
T PF03659_consen 69 MNSL--GPWS------QDELIALIKKYAG 89 (386)
T ss_pred ccCC--CCCC------HHHHHHHHHHHcC
Confidence 2110 1000 1788888888875
No 205
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=28.90 E-value=1.6e+02 Score=30.62 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC---CCCChHHHHHHHHHHc-CCeeEEEeCCCCCCC
Q 011170 89 NTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH---GRGDVVQELVNAAKAR-GVDVGLYLSPWDRHD 159 (492)
Q Consensus 89 ~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~---~krDiV~El~~Acrk~-Glk~G~Y~S~wD~~~ 159 (492)
+.+++||+..|=|-+-|.--++-+=|..++.-.+. |.| .+-.++.|++++.|+. +..+++=+|+.|...
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~--yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDE--YGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCC--CCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 45677899999999988544444444444332111 111 1346788889888887 678899899877654
No 206
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=28.66 E-value=78 Score=32.26 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCCCC---HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcC
Q 011170 79 PLGLD---ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARG 145 (492)
Q Consensus 79 p~~fD---~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~G 145 (492)
|..+| |+..|+++++.|-||||+|+---|-. .+|.--...+.++|.|+..
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL-----------------~DGGA~hfa~~i~~Ire~~ 146 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL-----------------PDGGAQHFAECIRAIRELN 146 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccc-----------------cccchHHHHHHHHHHHhhC
Confidence 66677 66789999999999999998655421 2444567888888888886
No 207
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.63 E-value=35 Score=25.36 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHhhhhcccc
Q 011170 1 MPKLCCFVCLITILFQLTNLASS 23 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (492)
|+|...+++++++++...+.|+-
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnT 24 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNT 24 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Confidence 66766666665655555667875
No 208
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=28.55 E-value=1.2e+02 Score=27.19 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
...++.++++|.+-+| |-+ ++++ ..--|..+++++|+.||+|
T Consensus 84 ~lia~ra~~kgi~~vV--------fdr------------~g~~--yhgRV~Ala~~AreaGL~f 125 (125)
T COG0256 84 KLIAERALAKGIEEVV--------FDR------------GGYK--YHGRVAALADGAREAGLEF 125 (125)
T ss_pred HHHHHHHHHcCCcEEE--------EcC------------CCCC--cchHHHHHHHHHHHcCcCC
Confidence 4578899999999999 222 2211 1356999999999999986
No 209
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.40 E-value=60 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=19.7
Q ss_pred CCchhHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCHhhH
Q 011170 1 MPKLCCFVCLITILFQLTNLASSKRQQVPTPPLPLSPLPSFSQL 44 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~q~ 44 (492)
|+|++|+.+++++ +++..+....-......+...+..+.+|+
T Consensus 1 MKk~~ll~~~ll~--s~~a~A~~~~~~~~~~tl~~~~~~T~~~a 42 (114)
T PF11777_consen 1 MKKIILLASLLLL--SSSAFAGSYQSTQQQDTLSTDRYITKQQA 42 (114)
T ss_pred CchHHHHHHHHHH--HHHHhhhhccccccccccccCceecHHHH
Confidence 8888776633333 32222213222334444444555666543
No 210
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.89 E-value=70 Score=31.70 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 78 NPLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 78 ~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
+.+.++|.+|++.+.+.|++.+++|.-..||-. +|+..++++++++++ .+-++.|
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~----------------~G~d~el~~~l~~~~-----~~pvias 194 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL----------------QEHDFSLTRKIAIEA-----EVKVFAA 194 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC----------------CCcCHHHHHHHHHHC-----CCCEEEE
Confidence 357899999999999999999999999999943 255567777776553 3455555
No 211
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=27.80 E-value=6.7e+02 Score=25.58 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=66.7
Q ss_pred HHHHHHHcCCcEEEEEeeecC--CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCC
Q 011170 87 WVNTAAEAGVSLMILTAKHHD--GFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGH 164 (492)
Q Consensus 87 W~~~ak~AGakyvvlTaKHHD--GF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~ 164 (492)
..+.++++|.|.++|-=-+-+ |=..|..... . ....-+..-+++||+.|+|+.+.+-.|.- ..+..
T Consensus 17 l~~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~---------~-~~~~~~~~~i~~lk~~G~kViiS~GG~~g--~~~~~ 84 (294)
T cd06543 17 LTTYAAATGVKAFTLAFIVASGGCKPAWGGSYP---------L-DQGGWIKSDIAALRAAGGDVIVSFGGASG--TPLAT 84 (294)
T ss_pred HHHHHHHcCCCEEEEEEEEcCCCCcccCCCCCC---------c-ccchhHHHHHHHHHHcCCeEEEEecCCCC--Ccccc
Confidence 337788999999997533322 2223331100 0 00233455677999999999998877652 22222
Q ss_pred CchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCcc-ccHHHHHHHHHhhCCCeeE
Q 011170 165 DLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMS-YYFTDWFAMVKELQSSINI 222 (492)
Q Consensus 165 ~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~-~~~~~~~~~i~~~qP~~vi 222 (492)
...-.+-+.+.+.+++++||- +.|=||--.+....... -.+.+..+.+++-.|+..|
T Consensus 85 ~~~~~~~~~~a~~~~i~~y~~-dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 85 SCTSADQLAAAYQKVIDAYGL-THLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred CcccHHHHHHHHHHHHHHhCC-CeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEE
Confidence 223334445666889999995 77767754432111000 1233334455554565544
No 212
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=27.74 E-value=6.6e+02 Score=25.53 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCC-ceeEEecCCCCCCCCCccccHHHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGD-VREIWFDGAKGSNAPNMSYYFTDWF 210 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~-i~~lWfDg~~~~~~~~~~~~~~~~~ 210 (492)
|++.++++++.+.|.....+.-+|- ...+-....|.+|..+-++++++.+.. ...+-+.|.. ..++
T Consensus 171 ~~~~~~~~~~~eaGad~i~i~d~~a--~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~-----------~~~l 237 (326)
T cd03307 171 EACIEYAKAQLEAGADIITIADPTA--SPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT-----------TPIL 237 (326)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCc--cccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC-----------hhHH
Confidence 5566788888888988654544332 222223468999998888888877643 1344445431 2245
Q ss_pred HHHHhhCCCee
Q 011170 211 AMVKELQSSIN 221 (492)
Q Consensus 211 ~~i~~~qP~~v 221 (492)
+.+.+...+++
T Consensus 238 ~~~~~~g~d~~ 248 (326)
T cd03307 238 EYIAQCGFDGI 248 (326)
T ss_pred HHHHHcCCCee
Confidence 55666666664
No 213
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=27.50 E-value=82 Score=31.22 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEEeeecCCcc
Q 011170 75 EIFNPLGLDANQWVNTAAEAGVSLMILTAKHHDGFC 110 (492)
Q Consensus 75 ~~F~p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~ 110 (492)
+-|+.+..++.+|++.+.+.|++.+++|.-..||-.
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~ 177 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLS 177 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccC
Confidence 345668899999999999999999999999999953
No 214
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=27.28 E-value=69 Score=35.67 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCc
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGF 109 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF 109 (492)
++.+|+-+|++.+.+.||..+++|.-..||-
T Consensus 435 ~~~~~~~~~~~~~~~~Gageil~t~id~DGt 465 (538)
T PLN02617 435 GRPIGAYELAKAVEELGAGEILLNCIDCDGQ 465 (538)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEeecccccc
Confidence 5789999999999999999999999999984
No 215
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=27.20 E-value=1.4e+02 Score=30.00 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCcEEEEEeeec-CC--------cccCCCC-CCCCccccCCC--CCCCCChHHHHHHHHHHcCCeeEEEeC
Q 011170 86 QWVNTAAEAGVSLMILTAKHH-DG--------FCLWPSK-FTEHSVAHSPW--KHGRGDVVQELVNAAKARGVDVGLYLS 153 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHH-DG--------F~lWpS~-~t~~~v~~sp~--~~~krDiV~El~~Acrk~Glk~G~Y~S 153 (492)
++.+.++++.-+-+|+.+-|| .. |++..++ +.+|.--..|. -.+..++..++++.|++.|+.+.....
T Consensus 33 ~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~LA~~i~~~l~~~g~~~~~~~~ 112 (268)
T cd07367 33 EIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELFPGHREFARAFVRQAAEDGFDLAQAEE 112 (268)
T ss_pred HHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccCCCCHHHHHHHHHHHHHcCCCeeeecC
Confidence 355566667889999999977 33 4544333 12221001121 124578999999999999999877643
No 216
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=27.13 E-value=1.3e+02 Score=32.75 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCC-CCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFT-EHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRH---DP 160 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t-~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~---~~ 160 (492)
++=++++|++|.|-+=+.--=- -+.|.... ..|-+ .-+.-.++.+.|.|+||.+-+-+++||-- ..
T Consensus 62 keDi~L~~emG~~~~R~SI~Ws---RIfP~g~~~e~N~~-------gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~ 131 (460)
T COG2723 62 KEDIALAKEMGLNAFRTSIEWS---RIFPNGDGGEVNEK-------GLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQK 131 (460)
T ss_pred HHHHHHHHHcCCCEEEeeeeEE---EeecCCCCCCcCHH-------HHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhh
Confidence 4558999999998765432110 02232222 22211 14778899999999999999999998832 23
Q ss_pred CCCC--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 161 RYGH--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 161 ~yg~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
.||. +.+-.+++..=.+-++++||+..-.|+=
T Consensus 132 ~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~T 165 (460)
T COG2723 132 PYGGWENRETVDAFARYAATVFERFGDKVKYWFT 165 (460)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEE
Confidence 3431 1122233333346677888875556654
No 217
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=26.85 E-value=70 Score=33.64 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCccc
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCL 111 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~l 111 (492)
+...+|++.+++++++++|.+|++ |+|-|.+
T Consensus 258 ~~hm~p~ea~~~a~~l~ak~vIpi--H~dtf~~ 288 (355)
T PRK11709 258 TDKMTSIDILRMAESLNAKVVIPV--HHDIWSN 288 (355)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE--Chhhccc
Confidence 357999999999999999988876 8886664
No 218
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.77 E-value=1.3e+02 Score=32.76 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC--CCC
Q 011170 86 QWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP--RYG 163 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~--~yg 163 (492)
+=++++|++|++..=+.----- +.|.-....| . ..-+.-.+++++|+++||++.+-+..||--.. .+|
T Consensus 57 eDi~L~~~lG~~~yRfSIsWsR---I~P~g~~~~N--~-----~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~G 126 (467)
T TIGR01233 57 VDLELAEEYGVNGIRISIAWSR---IFPTGYGEVN--E-----KGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNG 126 (467)
T ss_pred HHHHHHHHcCCCEEEEecchhh---ccCCCCCCcC--H-----HHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHcC
Confidence 3468999999987755432110 1111111111 1 11477889999999999999999998873210 122
Q ss_pred C--CchhhHHHHHHHHHHHhccCCceeEEec
Q 011170 164 H--DLQYNEYYLAQLQELLTRYGDVREIWFD 192 (492)
Q Consensus 164 ~--~~~y~~~~~~Ql~EL~t~YG~i~~lWfD 192 (492)
. ..+-.+++..=.+-+.++||+ ...|+=
T Consensus 127 GW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 127 DFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 1 123334444444667788888 556764
No 219
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=26.39 E-value=1.5e+02 Score=34.88 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecC-CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHD-GFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHD-GF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
..+-++-+++.|...|.++--... .-..|.-..++|...+ |.- |..+=+++|++||+++||++.+=+
T Consensus 18 ~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-p~l-Gt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 18 AAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-PEL-GGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-CCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 556667789999999988765421 1112222334553222 322 345779999999999999998854
No 220
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=26.06 E-value=1.7e+02 Score=29.25 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHH-cCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 81 GLDANQWVNTAAE-AGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 81 ~fD~dqW~~~ak~-AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
..|+++..+++++ -..|-+++|.-+.+|.+ -| ++++++.|+++|+.+-+
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~--------------------~d-l~~I~~~~~~~g~~liv 188 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGIC--------------------YN-LRKIVEEAHHRGLPVLV 188 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEe--------------------cC-HHHHHHHHHhcCCeEEE
Confidence 5899999998876 35677776532222222 14 68999999999987654
No 221
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.94 E-value=2.3e+02 Score=29.50 Aligned_cols=91 Identities=12% Similarity=0.237 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCeeEEEeC-------CCCCCCCCCCC-CchhhHHHHHHHHHHHhccCCceeEEecCC------CCCCC
Q 011170 134 VQELVNAAKARGVDVGLYLS-------PWDRHDPRYGH-DLQYNEYYLAQLQELLTRYGDVREIWFDGA------KGSNA 199 (492)
Q Consensus 134 V~El~~Acrk~Glk~G~Y~S-------~wD~~~~~yg~-~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~------~~~~~ 199 (492)
..++++++++.|+|..+--+ .||-....|.. ...+..-+...+.+-+.+||=-.++.+-.+ .....
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~ 172 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSC
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCc
Confidence 47999999999999999854 35433223321 112333334555555678884344443322 11111
Q ss_pred CC----------------ccccHHHHHHHHHhhCCCeeEec
Q 011170 200 PN----------------MSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 200 ~~----------------~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
.. ..+.+.++.+++.+|+|+.+-|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 173 EGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp HCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred cCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 00 11345677889999999887664
No 222
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=25.76 E-value=35 Score=29.21 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=17.6
Q ss_pred CCchhHHHHHHHHHHhhhhcccccCCCCCCCC
Q 011170 1 MPKLCCFVCLITILFQLTNLASSKRQQVPTPP 32 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (492)
|||+.++..++++|- -|+.-++....++
T Consensus 1 mKk~ll~~~lallLt----gCatqt~~~~~~~ 28 (97)
T PF06291_consen 1 MKKLLLAAALALLLT----GCATQTFTVGNQP 28 (97)
T ss_pred CcHHHHHHHHHHHHc----ccceeEEEeCCCC
Confidence 888887776665443 3777555554443
No 223
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.54 E-value=5.5e+02 Score=26.64 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeE-EecCCCCCCCCCccccHHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREI-WFDGAKGSNAPNMSYYFTDW 209 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~l-WfDg~~~~~~~~~~~~~~~~ 209 (492)
-|.+.+.++.+|+.|+++.+.++--.++. .+++.++.++ +..||. +.+ --|..... ...+..++
T Consensus 113 ~d~~~~~i~~ak~~G~~v~~~l~~s~~~~---------~e~l~~~a~~-~~~~Ga-~~i~i~DT~G~~----~P~~v~~~ 177 (333)
T TIGR03217 113 ADVSEQHIGMARELGMDTVGFLMMSHMTP---------PEKLAEQAKL-MESYGA-DCVYIVDSAGAM----LPDDVRDR 177 (333)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEcccCCC---------HHHHHHHHHH-HHhcCC-CEEEEccCCCCC----CHHHHHHH
Confidence 47899999999999999988776322211 2445555554 567997 444 44533211 11234555
Q ss_pred HHHHHh-hCCCeeE
Q 011170 210 FAMVKE-LQSSINI 222 (492)
Q Consensus 210 ~~~i~~-~qP~~vi 222 (492)
+..+++ +.|++-|
T Consensus 178 v~~l~~~l~~~i~i 191 (333)
T TIGR03217 178 VRALKAVLKPETQV 191 (333)
T ss_pred HHHHHHhCCCCceE
Confidence 566654 4455443
No 224
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=25.01 E-value=7.2e+02 Score=25.02 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhcc---CCceeEEecCCCCCCCCCccccHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRY---GDVREIWFDGAKGSNAPNMSYYFTD 208 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~Y---G~i~~lWfDg~~~~~~~~~~~~~~~ 208 (492)
|.+.++++++.+.|.....|.-+|- ...+-....|.+|..+-++++++.. |-...+-..|.. ..
T Consensus 168 ~~~~~~~~~~~~~G~d~i~i~d~~~--~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~~-----------~~ 234 (330)
T cd03465 168 EFIIRYADALIEAGADGIYISDPWA--SSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDT-----------AP 234 (330)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcc--ccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCCc-----------hh
Confidence 4567777888888986544443332 2222223578888887777766543 432344444421 13
Q ss_pred HHHHHHhhCCCeeEe
Q 011170 209 WFAMVKELQSSINIF 223 (492)
Q Consensus 209 ~~~~i~~~qP~~vi~ 223 (492)
.++.+.++..+++-+
T Consensus 235 ~~~~l~~~~~d~~~~ 249 (330)
T cd03465 235 ILELMADLGADVFSI 249 (330)
T ss_pred HHHHHHHhCCCeEee
Confidence 456677777777543
No 225
>PLN02801 beta-amylase
Probab=24.90 E-value=5.5e+02 Score=28.48 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCcEEEEEeeec------CCccc----CCC---------CCC--------CC---ccccCCCCCCCC--
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHH------DGFCL----WPS---------KFT--------EH---SVAHSPWKHGRG-- 131 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHH------DGF~l----WpS---------~~t--------~~---~v~~sp~~~~kr-- 131 (492)
=.+.+++++++|.|..++.+-|- |...+ |=. -+| +| -+++.|.-+|+.
T Consensus 76 Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpl 155 (517)
T PLN02801 76 YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAV 155 (517)
T ss_pred HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHH
Confidence 36789999999999999999994 44322 211 111 11 234457666664
Q ss_pred ----ChHHHHHHHHHHc---CCeeEEEeCC--------------CCCCCCCCCCCchhhHHHHHHHHHHHhccCC
Q 011170 132 ----DVVQELVNAAKAR---GVDVGLYLSP--------------WDRHDPRYGHDLQYNEYYLAQLQELLTRYGD 185 (492)
Q Consensus 132 ----DiV~El~~Acrk~---Glk~G~Y~S~--------------wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~ 185 (492)
|+++.|.++++.. |+-..|+.+. ..|..|.-|.-.-|++|.+..|+.-....|.
T Consensus 156 q~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~ 230 (517)
T PLN02801 156 EMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGH 230 (517)
T ss_pred HHHHHHHHHHHHHHHHhccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCC
Confidence 5555555554442 5666666653 1244444443357899999999998887785
No 226
>PLN02801 beta-amylase
Probab=24.89 E-value=1.7e+02 Score=32.30 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=41.9
Q ss_pred CCCCCCCH-HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 77 FNPLGLDA-NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 77 F~p~~fD~-dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
+|...-|- ...|+.+++-|+. ++|| +.-|=|++..... ..+| -.||+.+..||+++||.+.
T Consensus 321 YN~~~rDGY~pIa~m~~rh~~~-l~FT-----ClEM~D~eq~~~~-~s~P-----E~Lv~QV~~aa~~~Gv~va 382 (517)
T PLN02801 321 YNLKGRDGYRPIARMLSRHYGI-LNFT-----CLEMRDTEQPAEA-LSAP-----QELVQQVLSGAWREGIEVA 382 (517)
T ss_pred ccCCCccchHHHHHHHHHcCCe-EEEe-----ecccccCCCCccc-CCCH-----HHHHHHHHHHHHHcCCcEe
Confidence 34444443 5699999999984 4555 3456666643322 2334 4999999999999999985
No 227
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=24.88 E-value=96 Score=37.65 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
-.+++.++.||+.||+.+.|| |+++.. =+-+|.++|+++|||+-+
T Consensus 19 ~~i~~lv~~A~~~g~~alAlT---------------Dh~~m~---------Ga~~F~~~a~~~gIkPIi 63 (1107)
T PRK06920 19 CKIDELVVRAKELGYSSLAIT---------------DENVMY---------GVIPFYKACKKHGIHPII 63 (1107)
T ss_pred CCHHHHHHHHHHCCCCEEEEE---------------eCChHh---------HHHHHHHHHHHcCCCEee
Confidence 448999999999999999885 554332 156899999999999854
No 228
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=24.81 E-value=1.4e+02 Score=37.92 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHH-DGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHH-DGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
..+.++-+++.|++.+.++--.- ..-..+--.+++|.-. .|.-|+ .+=++.|+++|+++||++.+=+-+
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~i-dp~lG~-~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQI-NPEIGG-EEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCcc-CcccCC-HHHHHHHHHHHHHCCCEEEEEecc
Confidence 55666778999999999886543 1112222233455322 343444 455799999999999999886654
No 229
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=24.67 E-value=1.3e+02 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc--CCeeEEEeCC
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKAR--GVDVGLYLSP 154 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~--Glk~G~Y~S~ 154 (492)
++.++++|+.++.+-..|..+ .+.+.++++++|+. ++++++..++
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----------------------~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----------------------AREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----------------------HHHHHHHHHHHHHhcCCceEEEEECC
Confidence 469999999999998888765 15667888888887 9999999986
No 230
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.62 E-value=1.4e+02 Score=31.60 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
.+-|+.+|++|++++- + ..|+..+++|+ |+|...+=.++|.+.|++.||.+..-
T Consensus 135 ~~~A~~lk~~g~~~~r---~-----~~~kpRtsp~~-----f~g~~~e~l~~L~~~~~~~Gl~~~t~ 188 (360)
T PRK12595 135 EAVAKALKAKGLKLLR---G-----GAFKPRTSPYD-----FQGLGVEGLKILKQVADEYGLAVISE 188 (360)
T ss_pred HHHHHHHHHcCCcEEE---c-----cccCCCCCCcc-----ccCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4456666677776655 1 34555555553 56777799999999999999999874
No 231
>PLN02705 beta-amylase
Probab=24.49 E-value=1.6e+02 Score=33.22 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred EEecccccCCCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCC
Q 011170 55 LHFGVNTFTDSEWGTGNENPEIFNPLGLD------ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKH 128 (492)
Q Consensus 55 iHwG~~t~~~~EW~~g~~~p~~F~p~~fD------~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~ 128 (492)
||| |+....+|+.-++--+| =...++.+|+.|+.. .||+ .+|=++...+.....+|
T Consensus 533 IHW---------WY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l-~FTC-----~eMe~~d~~~~~a~s~P--- 594 (681)
T PLN02705 533 VYW---------WYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTV-KFVC-----SGLQMSPNENDEALADP--- 594 (681)
T ss_pred ccc---------cCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceE-EEEe-----ccccccCCCCCccCCCH---
Q ss_pred CCCChHHHHHHHHHHcCCeeE
Q 011170 129 GRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 129 ~krDiV~El~~Acrk~Glk~G 149 (492)
-.||+.+..||+++||.+.
T Consensus 595 --E~LV~QV~~aA~~~Gv~va 613 (681)
T PLN02705 595 --EGLSWQVLNSAWDRGLTVA 613 (681)
T ss_pred --HHHHHHHHHHHHHcCCcee
No 232
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.35 E-value=3.1e+02 Score=27.35 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCC
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDP 160 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~ 160 (492)
--++-+.++.|+++|++.++++.=+. .. ....+++.=+.+-|.+-++.+.+|.-|.-
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~----------~~---------~~~~~l~~~~~~ia~~~~~pi~lYn~P~~---- 137 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYY----------NK---------PSQEGLYAHFKAIAEATDLPVILYNVPGR---- 137 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccc----------CC---------CCHHHHHHHHHHHHhcCCCCEEEEEChhH----
Confidence 34778899999999999999984321 11 01135555555555667999999965411
Q ss_pred CCCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 161 RYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 161 ~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
-|. .+-.+.+.+|.+. ..+..+ |....+..++.++++...++..|+.
T Consensus 138 -~g~-----~ls~~~~~~L~~~-p~v~gi----------K~s~~~~~~~~~~~~~~~~~~~v~~ 184 (284)
T cd00950 138 -TGV-----NIEPETVLRLAEH-PNIVGI----------KEATGDLDRVSELIALCPDDFAVLS 184 (284)
T ss_pred -hCC-----CCCHHHHHHHhcC-CCEEEE----------EECCCCHHHHHHHHHhCCCCeEEEe
Confidence 111 1123556777753 444333 1112245566667777777877764
No 233
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.04 E-value=1.8e+02 Score=28.31 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYL 152 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~ 152 (492)
.++++.+++.|++.+||------||.+++-....+.... +. ..+.+..+.+.||++++-+.+=+
T Consensus 22 ~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~a~~~~i~i~~G~ 85 (258)
T cd07584 22 AELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE-PI---DGPTVRLFSELAKELGVYIVCGF 85 (258)
T ss_pred HHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhcc-CC---CCcHHHHHHHHHHHcCeEEEEee
Confidence 456777888899999988776778876432211111111 11 14688899999999987665443
No 234
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.99 E-value=1.5e+02 Score=29.28 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 79 PLGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 79 p~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
++.++.++-++.++++|+++|=+.....+. +. ..++ | ...-+.++.++++++||++.
T Consensus 18 ~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~---~~---~~~~-----~---~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 18 PAGECWLEKLAIAKTAGFDFVEMSVDESDE---RL---ARLD-----W---SREQRLALVNALVETGFRVN 74 (283)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCcccc---ch---hccC-----C---CHHHHHHHHHHHHHcCCcee
Confidence 466889999999999999999985322111 00 0000 0 12458899999999999984
No 235
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=23.65 E-value=2.4e+02 Score=26.32 Aligned_cols=47 Identities=21% Similarity=0.494 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
|+...++.+.++|+..+++ |++ ..|-..+..+.++++|+++|+-.++
T Consensus 68 d~~~~~~~~~~~g~dgv~v----h~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 68 NPERYIEAFAKAGADIITF----HAE---------------------ATDHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred CHHHHHHHHHHcCCCEEEE----Ccc---------------------chhhHHHHHHHHHHCCCeEEEEecC
Confidence 5677888888999888755 111 1255567899999999999998764
No 236
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.63 E-value=5.4e+02 Score=24.83 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 80 LGLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 80 ~~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
.+++-++.++.++++|.++|=+.. |+. .+ +.++.+.|+++||++..+
T Consensus 12 ~~~~l~e~~~~~~e~G~~~vEl~~---------------------~~~---~~-~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 12 TELPFLERFAAAAQAGFTGVEYLF---------------------PYD---WD-AEALKARLAAAGLEQVLF 58 (254)
T ss_pred cCCCHHHHHHHHHHcCCCEEEecC---------------------Ccc---CC-HHHHHHHHHHcCCeEEEE
Confidence 568899999999999999997621 111 13 788999999999998765
No 237
>PRK13792 lysozyme inhibitor; Provisional
Probab=23.35 E-value=53 Score=29.46 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHhhhhcccccCCCCCCC
Q 011170 1 MPKLCCFVCLITILFQLTNLASSKRQQVPTP 31 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (492)
|++.++++++.+.++-+ +|++ .++++
T Consensus 1 mk~~l~~ll~~~~~lLs--aCs~---~~~~~ 26 (127)
T PRK13792 1 MKKALWLLLAAVPVVLV--ACGG---SDDDK 26 (127)
T ss_pred ChhHHHHHHHHHHhhee--cccC---CCCCc
Confidence 88775555444443333 3898 55554
No 238
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.34 E-value=3.9e+02 Score=26.48 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 011170 82 LDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPR 161 (492)
Q Consensus 82 fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~ 161 (492)
-++-+.++.++++|+..++++.-+. ... + ...++.-+.+-|.+-++.+.+|..|.-.
T Consensus 79 ~~~i~~a~~a~~~Gad~v~v~pP~y----------~~~----~-----~~~~~~~~~~ia~~~~~pi~iYn~P~~t---- 135 (281)
T cd00408 79 REAIELARHAEEAGADGVLVVPPYY----------NKP----S-----QEGIVAHFKAVADASDLPVILYNIPGRT---- 135 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcC----------CCC----C-----HHHHHHHHHHHHhcCCCCEEEEECcccc----
Confidence 4577888999999999999966441 110 1 1356666666666679999999876321
Q ss_pred CCCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 162 YGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 162 yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
|. .+-.+.+.+|.. -..|..+ |....+..++.++++...|+..|+.
T Consensus 136 -g~-----~l~~~~~~~L~~-~~~v~gi----------K~s~~d~~~~~~~~~~~~~~~~v~~ 181 (281)
T cd00408 136 -GV-----DLSPETIARLAE-HPNIVGI----------KDSSGDLDRLTRLIALLGPDFAVLS 181 (281)
T ss_pred -CC-----CCCHHHHHHHhc-CCCEEEE----------EeCCCCHHHHHHHHHhcCCCeEEEE
Confidence 11 112355677764 3444333 2222355667777777777887764
No 239
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=23.26 E-value=1.4e+02 Score=26.27 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
-...++.++++|.+.+||--. || .| .--|+.+++++|+.||+|
T Consensus 75 G~~la~ra~~~gi~~vvfDrg---~~---------------~y----hGrV~a~a~~are~Gl~f 117 (117)
T PRK05593 75 GKLIAERAKAKGIKQVVFDRG---GY---------------KY----HGRVKALADAAREAGLKF 117 (117)
T ss_pred HHHHHHHHHHCCCCEEEEcCC---CC---------------cc----cHHHHHHHHHHHHhCCCC
Confidence 456788999999999876421 11 11 247999999999999986
No 240
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.03 E-value=3.9e+02 Score=25.75 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=44.5
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCch
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQ 167 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~ 167 (492)
++.+.++|+.|+-| -+++. ++..|. .+.++++.++++..-.++|++...-
T Consensus 16 a~~~~~~Gad~iGf--------I~~~~--S~R~V~--------~~~a~~i~~~~~~~i~~VgVf~~~~------------ 65 (210)
T PRK01222 16 AEAAAELGADAIGF--------VFYPK--SPRYVS--------PEQAAELAAALPPFVKVVGVFVNAS------------ 65 (210)
T ss_pred HHHHHHcCCCEEEE--------ccCCC--CCCcCC--------HHHHHHHHHhCCCCCCEEEEEeCCC------------
Confidence 67888999999966 33332 222221 3667777777765567889887741
Q ss_pred hhHHHHHHHHHHHhccCCceeEEecCC
Q 011170 168 YNEYYLAQLQELLTRYGDVREIWFDGA 194 (492)
Q Consensus 168 y~~~~~~Ql~EL~t~YG~i~~lWfDg~ 194 (492)
.+.+.+++..++. +.+.+-|.
T Consensus 66 -----~~~i~~~~~~~~~-d~vQLHg~ 86 (210)
T PRK01222 66 -----DEEIDEIVETVPL-DLLQLHGD 86 (210)
T ss_pred -----HHHHHHHHHhcCC-CEEEECCC
Confidence 2445566666665 66666553
No 241
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.81 E-value=88 Score=30.82 Aligned_cols=31 Identities=39% Similarity=0.752 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEeeecCC
Q 011170 78 NPLGLDANQWVNTAAEAGVSLMILTAKHHDG 108 (492)
Q Consensus 78 ~p~~fD~dqW~~~ak~AGakyvvlTaKHHDG 108 (492)
+++.+++.++++.+.++|+.++++|.-+.||
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 4678899999999999999999999877666
No 242
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=22.66 E-value=4.3e+02 Score=26.74 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEeeec-CCc--------ccCCC-CCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 011170 80 LGLDANQWVNTAAEAGVSLMILTAKHH-DGF--------CLWPS-KFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVG 149 (492)
Q Consensus 80 ~~fD~dqW~~~ak~AGakyvvlTaKHH-DGF--------~lWpS-~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G 149 (492)
+.=+.++..+.-|+.|+.-|-+.+-.+ |+. .-++- +-+.++.. .| ...--|=|...++.+.++||.++
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~-~~-N~~YF~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT-RP-NPAYFDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T-T-----HHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC-CC-CHHHHHHHHHHHHHHHHCCCeEE
Confidence 333456678889999999887776655 443 11100 00001110 00 01125678899999999999998
Q ss_pred EEeCC---C---CCCC--CCCCCCchhhHHHHHHHHHHHhccCCc-eeEEecCCCCCCCCCccccHHHHHHHHHhhCCCe
Q 011170 150 LYLSP---W---DRHD--PRYGHDLQYNEYYLAQLQELLTRYGDV-REIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSI 220 (492)
Q Consensus 150 ~Y~S~---w---D~~~--~~yg~~~~y~~~~~~Ql~EL~t~YG~i-~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~ 220 (492)
+=..- + .|.. ...+ .+-...=++-|..||+.. ..+|+=|+-........-.++++.+.|++..|..
T Consensus 106 lv~~wg~~~~~~~Wg~~~~~m~-----~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~ 180 (289)
T PF13204_consen 106 LVPFWGCPYVPGTWGFGPNIMP-----PENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDAMARGIKENDPYQ 180 (289)
T ss_dssp EESS-HHHHH-------TTSS------HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHHHHHHHHHH--SS
T ss_pred EEEEECCccccccccccccCCC-----HHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHHHHHHHHhhCCCC
Confidence 64431 1 1322 1111 122223347788899986 4788866543111122335788899999999976
Q ss_pred eEe
Q 011170 221 NIF 223 (492)
Q Consensus 221 vi~ 223 (492)
++.
T Consensus 181 L~T 183 (289)
T PF13204_consen 181 LIT 183 (289)
T ss_dssp -EE
T ss_pred cEE
Confidence 553
No 243
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=22.20 E-value=1.6e+02 Score=31.12 Aligned_cols=67 Identities=22% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHcCCcEEEEEeeecC-CcccCCCCCCCCccccCCCCC---CCCChHHHHHHHHHHc---CCeeEEEeCCCCC
Q 011170 89 NTAAEAGVSLMILTAKHHD-GFCLWPSKFTEHSVAHSPWKH---GRGDVVQELVNAAKAR---GVDVGLYLSPWDR 157 (492)
Q Consensus 89 ~~ak~AGakyvvlTaKHHD-GF~lWpS~~t~~~v~~sp~~~---~krDiV~El~~Acrk~---Glk~G~Y~S~wD~ 157 (492)
+.|++||+..|=|-+-||. -++-+=|..++.-.+ .|-| .+-.++.|++++.|++ ++.+|+=+|+.|+
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtD--eyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTD--KYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCC--cCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 3456899999998777753 223333433332111 1211 1468899999999986 6788998887654
No 244
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.16 E-value=1.1e+02 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
=++++| ++.+.++||+|+| || -+..|++++|+++||.+
T Consensus 75 V~~~~~-~~~a~~aGA~Fiv-----------------------sP------~~~~~v~~~~~~~~i~~ 112 (213)
T PRK06552 75 VLDAVT-ARLAILAGAQFIV-----------------------SP------SFNRETAKICNLYQIPY 112 (213)
T ss_pred CCCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHHcCCCE
Confidence 366776 4889999999987 33 34568899999999865
No 245
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.97 E-value=3.2e+02 Score=28.88 Aligned_cols=110 Identities=26% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCCCCCHHHH----------HHHHHHcCCcEEEEEeeecCCccc--CCCCCCCCccccCCCCC---CCCChHHHHHHHH
Q 011170 77 FNPLGLDANQW----------VNTAAEAGVSLMILTAKHHDGFCL--WPSKFTEHSVAHSPWKH---GRGDVVQELVNAA 141 (492)
Q Consensus 77 F~p~~fD~dqW----------~~~ak~AGakyvvlTaKHHDGF~l--WpS~~t~~~v~~sp~~~---~krDiV~El~~Ac 141 (492)
..|..++-++. ++.|++||+..|=+-+-|. |-| +=|..|+. +.=.|.| .+-=++.|+++|+
T Consensus 134 ~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhG--YLi~qFlsp~tN~--RtD~YGGSlENR~Rf~~EVv~aV 209 (363)
T COG1902 134 ATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHG--YLLSQFLSPLTNK--RTDEYGGSLENRARFLLEVVDAV 209 (363)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccc--hHHHHhcCCccCC--CCCccCCcHHHHHHHHHHHHHHH
Confidence 45667776655 4567899999999999885 433 12222221 1112211 1345889999999
Q ss_pred HHc-C--CeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEEecCCC
Q 011170 142 KAR-G--VDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAK 195 (492)
Q Consensus 142 rk~-G--lk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~ 195 (492)
|+. | ..+|+=+|+.|+.+ ..|.+ ..++ .++-+.+...|.++.+..-++.
T Consensus 210 r~~vg~~~~vg~Rls~~d~~~-~~g~~--~~e~--~~la~~L~~~G~~d~i~vs~~~ 261 (363)
T COG1902 210 REAVGADFPVGVRLSPDDFFD-GGGLT--IEEA--VELAKALEEAGLVDYIHVSEGG 261 (363)
T ss_pred HHHhCCCceEEEEECccccCC-CCCCC--HHHH--HHHHHHHHhcCCccEEEeeccc
Confidence 998 4 45899999999822 22321 1222 3445566677877888776653
No 246
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.90 E-value=1.7e+02 Score=29.77 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~y 162 (492)
.-...+.+|++.|||-+|-.+ +|...+ |.. . .--...+.++|++.||+|-.=-.| +|.-
T Consensus 118 ~G~~i~~~Ak~mGAktFVh~s--------fprhms-~~~-----l---~~Rr~~M~~~C~~lGi~fv~~taP----DP~s 176 (275)
T PF12683_consen 118 RGYTIVWAAKKMGAKTFVHYS--------FPRHMS-YEL-----L---ARRRDIMEEACKDLGIKFVEVTAP----DPTS 176 (275)
T ss_dssp HHHHHHHHHHHTT-S-EEEEE--------ETTGGG-SHH-----H---HHHHHHHHHHHHHCT--EEEEEE-------SS
T ss_pred ccHHHHHHHHHcCCceEEEEe--------chhhcc-hHH-----H---HHHHHHHHHHHHHcCCeEEEEeCC----CCCC
Confidence 355788999999999988653 122222 110 0 112345668999999999766554 1111
Q ss_pred CC-CchhhHHHHHHHHHHHhccCCceeEEe
Q 011170 163 GH-DLQYNEYYLAQLQELLTRYGDVREIWF 191 (492)
Q Consensus 163 g~-~~~y~~~~~~Ql~EL~t~YG~i~~lWf 191 (492)
+. ...=.+|.++.+...+.+||+ +.-.|
T Consensus 177 d~gv~gaqqfIlE~vp~~i~kYGk-dtaff 205 (275)
T PF12683_consen 177 DVGVAGAQQFILEDVPKWIKKYGK-DTAFF 205 (275)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-S---EEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCC-ceeEE
Confidence 11 125578999999999999999 66666
No 247
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=21.89 E-value=1.8e+02 Score=31.24 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCC-hHHHHHHHHHHcCCeeEE-EeCCC
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGD-VVQELVNAAKARGVDVGL-YLSPW 155 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krD-iV~El~~Acrk~Glk~G~-Y~S~w 155 (492)
|...++.+.++||.++++-...+ | -+.++.+.||++|+++++ -+|+.
T Consensus 70 g~~~v~~a~~aGAdgV~v~g~~~-------------------------~~~~~~~i~~a~~~G~~~~~g~~s~~ 118 (430)
T PRK07028 70 GAIEVEMAAKAGADIVCILGLAD-------------------------DSTIEDAVRAARKYGVRLMADLINVP 118 (430)
T ss_pred hHHHHHHHHHcCCCEEEEecCCC-------------------------hHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 56689999999999887642211 1 267889999999999987 46654
No 248
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.81 E-value=1.4e+02 Score=30.90 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCcEEEEEeee---cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 011170 86 QWVNTAAEAGVSLMILTAKH---HDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWD 156 (492)
Q Consensus 86 qW~~~ak~AGakyvvlTaKH---HDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD 156 (492)
..++.+.+-||...|...|. |-. -|-..|+. -.-+-++||+++|++.|++|+.=+||..
T Consensus 19 ~l~~f~~~~kmN~YiYAPKdDpyhr~--~Wre~Yp~----------~el~~l~~L~~~a~~~~V~Fv~aisPg~ 80 (306)
T PF07555_consen 19 DLIRFLGRYKMNTYIYAPKDDPYHRS--KWREPYPE----------EELAELKELADAAKANGVDFVYAISPGL 80 (306)
T ss_dssp HHHHHHHHTT--EEEE--TT-TTTTT--TTTS---H----------HHHHHHHHHHHHHHHTT-EEEEEEBGTT
T ss_pred HHHHHHHHcCCceEEECCCCChHHHh--hhcccCCH----------HHHHHHHHHHHHHHHcCCEEEEEECccc
Confidence 45677788899988888764 111 34433332 2357799999999999999999999843
No 249
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.79 E-value=68 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=12.3
Q ss_pred CCchhHHHHHHHHHHhhhhcccccC
Q 011170 1 MPKLCCFVCLITILFQLTNLASSKR 25 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (492)
|+|--+++.+++++..+.+.|+-|+
T Consensus 2 mk~t~l~i~~vll~s~llaaCNT~r 26 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACNTMR 26 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5663333433344444445687653
No 250
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=21.69 E-value=4.1e+02 Score=30.70 Aligned_cols=54 Identities=13% Similarity=0.356 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhccCC--ce-------eEEec-CCCCCCCCCccccHHHHHHHH--HhhCCCeeEe
Q 011170 170 EYYLAQLQELLTRYGD--VR-------EIWFD-GAKGSNAPNMSYYFTDWFAMV--KELQSSINIF 223 (492)
Q Consensus 170 ~~~~~Ql~EL~t~YG~--i~-------~lWfD-g~~~~~~~~~~~~~~~~~~~i--~~~qP~~vi~ 223 (492)
..+...|+..+..||= || .+|+- |..........|..++++..+ .+..++++|.
T Consensus 431 ~ww~~rlr~~~~~~g~lRIDH~~Gl~rlW~IP~g~~a~~G~yv~~P~~~ll~~lales~~~~~~vI 496 (695)
T PRK11052 431 QPFIDLLRANMQHCGALRIDHVMSLLRLWWIPYGETADQGAYVHYPVDDLLAILALESQRHRCMVI 496 (695)
T ss_pred HHHHHHHHHHHHhCCEEEecchhhhheeeecCCCCCCCCCeeEeCCHHHHHHHHHHHHhcCCCCEE
Confidence 3567888888888884 22 23433 221111112345678888866 7777888765
No 251
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.48 E-value=2.3e+02 Score=27.25 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCch
Q 011170 88 VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQ 167 (492)
Q Consensus 88 ~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~ 167 (492)
++++.++|+.|+-| -+++. ++-.|. .+..+++++++...--++|+....-
T Consensus 14 a~~~~~~GaD~iGf--------If~~~--SpR~V~--------~~~a~~i~~~~~~~~~~VgVf~~~~------------ 63 (207)
T PRK13958 14 VTAASQLPIDAIGF--------IHYEK--SKRHQT--------ITQIKKLASAVPNHIDKVCVVVNPD------------ 63 (207)
T ss_pred HHHHHHcCCCEEEE--------ecCCC--CcccCC--------HHHHHHHHHhCCCCCCEEEEEeCCC------------
Confidence 67889999999966 33342 222222 3777888887765445789987631
Q ss_pred hhHHHHHHHHHHHhccCCceeEEecC
Q 011170 168 YNEYYLAQLQELLTRYGDVREIWFDG 193 (492)
Q Consensus 168 y~~~~~~Ql~EL~t~YG~i~~lWfDg 193 (492)
...+.|++++++. +.+.+-|
T Consensus 64 -----~~~i~~~~~~~~~-d~vQLHG 83 (207)
T PRK13958 64 -----LTTIEHILSNTSI-NTIQLHG 83 (207)
T ss_pred -----HHHHHHHHHhCCC-CEEEECC
Confidence 2445556666665 6666655
No 252
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=21.46 E-value=99 Score=28.20 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=25.7
Q ss_pred CCCCCchhhHHHHHHHHHHHhccCC-ceeEEe
Q 011170 161 RYGHDLQYNEYYLAQLQELLTRYGD-VREIWF 191 (492)
Q Consensus 161 ~yg~~~~y~~~~~~Ql~EL~t~YG~-i~~lWf 191 (492)
.||+...+..+...|+..-..+||| +.+.||
T Consensus 88 ~FGd~~~h~~~~~~Q~~~Y~nrfGpG~VIyw~ 119 (139)
T PF14811_consen 88 YFGDERSHKHYLKKQFSSYWNRFGPGAVIYWF 119 (139)
T ss_pred hcCChHHHHHHHHHHHHHHHHHhCCceEEEec
Confidence 4777778888999999999999999 445576
No 253
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.44 E-value=83 Score=28.60 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=9.8
Q ss_pred CCchhHHHHHHHHHHh
Q 011170 1 MPKLCCFVCLITILFQ 16 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (492)
|+|.+++++++++|+.
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 6666666666555543
No 254
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=21.43 E-value=1.9e+02 Score=28.47 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHH----cC-CcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 011170 80 LGLDANQWVNTAAE----AG-VSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP 154 (492)
Q Consensus 80 ~~fD~dqW~~~ak~----AG-akyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~ 154 (492)
+-.|++.|.++++. .| +..+++.+-. .+ ...+.+..+++||++.|++--+|.|.
T Consensus 47 d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~------------------~~---~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 47 DWLDEDTWDNPFSSDDGMEPEISAVYLVAPP------------------IP---DLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred cCCCHHHHHHHHhcccCcCCceeEEEEeCCC------------------CC---ChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 33789999988853 46 7777654310 00 11367788999999999999999996
Q ss_pred C
Q 011170 155 W 155 (492)
Q Consensus 155 w 155 (492)
.
T Consensus 106 ~ 106 (285)
T TIGR03649 106 S 106 (285)
T ss_pred c
Confidence 4
No 255
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.41 E-value=1.5e+02 Score=31.18 Aligned_cols=79 Identities=20% Similarity=0.019 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeE-EecCCCCCCCCCccccHHHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREI-WFDGAKGSNAPNMSYYFTDWF 210 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~l-WfDg~~~~~~~~~~~~~~~~~ 210 (492)
+.++++++.+|++|+++.+|+|.-.- .|..+.. =.+++.+.++++. ..|- +.+ --|...-. ......+++
T Consensus 162 ~~~~~~v~~Ak~~Gl~v~~~is~~fg-~p~~~r~--~~~~l~~~~~~~~-~~Ga-d~I~l~DT~G~a----~P~~v~~lv 232 (347)
T PLN02746 162 VRYREVALAAKKHSIPVRGYVSCVVG-CPIEGPV--PPSKVAYVAKELY-DMGC-YEISLGDTIGVG----TPGTVVPML 232 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEeeec-CCccCCC--CHHHHHHHHHHHH-HcCC-CEEEecCCcCCc----CHHHHHHHH
Confidence 34458899999999999999874221 1111110 1345555556654 3575 444 44533211 112334455
Q ss_pred HHHHhhCCC
Q 011170 211 AMVKELQSS 219 (492)
Q Consensus 211 ~~i~~~qP~ 219 (492)
+.+++.-|.
T Consensus 233 ~~l~~~~~~ 241 (347)
T PLN02746 233 EAVMAVVPV 241 (347)
T ss_pred HHHHHhCCC
Confidence 555554454
No 256
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.23 E-value=1.8e+02 Score=29.13 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 011170 84 ANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLY 151 (492)
Q Consensus 84 ~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y 151 (492)
.-+-|+.+|++|++++-= .-|+-+++.|+ |+|..-+=+++|.++|++.||.+-.-
T Consensus 31 ~~~~a~~~~~~g~~~~r~--------g~~kpRts~~s-----f~G~G~~gl~~L~~~~~~~Gl~~~Te 85 (250)
T PRK13397 31 IRLAASSAKKLGYNYFRG--------GAYKPRTSAAS-----FQGLGLQGIRYLHEVCQEFGLLSVSE 85 (250)
T ss_pred HHHHHHHHHHcCCCEEEe--------cccCCCCCCcc-----cCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 345666788888876542 24565666553 45666789999999999999999774
No 257
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.02 E-value=8.4e+02 Score=25.34 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhccCCceeEE-ecCCCCCCCCCccccHHHH
Q 011170 131 GDVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIW-FDGAKGSNAPNMSYYFTDW 209 (492)
Q Consensus 131 rDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~YG~i~~lW-fDg~~~~~~~~~~~~~~~~ 209 (492)
-|.+.+.++.+|+.|+++.++++.-..+. .+++.+++++ +..||. +.+- -|..... ...+..++
T Consensus 114 ~~~~~~~i~~ak~~G~~v~~~l~~a~~~~---------~e~l~~~a~~-~~~~Ga-~~i~i~DT~G~~----~P~~v~~~ 178 (337)
T PRK08195 114 ADVSEQHIGLARELGMDTVGFLMMSHMAP---------PEKLAEQAKL-MESYGA-QCVYVVDSAGAL----LPEDVRDR 178 (337)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCCC---------HHHHHHHHHH-HHhCCC-CEEEeCCCCCCC----CHHHHHHH
Confidence 48899999999999999988876322111 2455555554 456897 5543 4433211 11234555
Q ss_pred HHHHHh-hCCCeeE
Q 011170 210 FAMVKE-LQSSINI 222 (492)
Q Consensus 210 ~~~i~~-~qP~~vi 222 (492)
+..+++ +.|++-|
T Consensus 179 v~~l~~~l~~~i~i 192 (337)
T PRK08195 179 VRALRAALKPDTQV 192 (337)
T ss_pred HHHHHHhcCCCCeE
Confidence 566654 3466544
No 258
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=20.98 E-value=4.2e+02 Score=26.52 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCHHHH---HHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC---C
Q 011170 82 LDANQW---VNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSP---W 155 (492)
Q Consensus 82 fD~dqW---~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~---w 155 (492)
++.+++ ++++|++|+..|=+ ||-- . + .++.++|-+.||-+-.=... .
T Consensus 33 ~~~~~~~~d~~l~k~~G~N~iR~---~h~p--------------~--------~--~~~~~~cD~~GilV~~e~~~~~~~ 85 (298)
T PF02836_consen 33 MPDEAMERDLELMKEMGFNAIRT---HHYP--------------P--------S--PRFYDLCDELGILVWQEIPLEGHG 85 (298)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---TTS------------------------S--HHHHHHHHHHT-EEEEE-S-BSCT
T ss_pred CCHHHHHHHHHHHHhcCcceEEc---cccc--------------C--------c--HHHHHHHhhcCCEEEEeccccccC
Confidence 444444 56799999998754 4411 0 1 47899999999987543221 1
Q ss_pred CCCCC----CCCCCchhhHHHHHHHHHHHhccC--CceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEe
Q 011170 156 DRHDP----RYGHDLQYNEYYLAQLQELLTRYG--DVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIF 223 (492)
Q Consensus 156 D~~~~----~yg~~~~y~~~~~~Ql~EL~t~YG--~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 223 (492)
-|... .+..++.+.+.+..+++|++.++- |--.+|.=|. .. .....+.+++++++++-|...|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gN-E~---~~~~~~~~l~~~~k~~DptRpv~ 155 (298)
T PF02836_consen 86 SWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGN-ES---DYREFLKELYDLVKKLDPTRPVT 155 (298)
T ss_dssp SSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEE-SS---HHHHHHHHHHHHHHHH-TTSEEE
T ss_pred ccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCc-cC---ccccchhHHHHHHHhcCCCCcee
Confidence 11111 123457888889999999998775 4345676442 22 22334678889999999987764
No 259
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.90 E-value=1.2e+02 Score=29.23 Aligned_cols=38 Identities=39% Similarity=0.539 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV 148 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~ 148 (492)
=+|++| ++.+.+|||+|+| || -+..|+.++|+++||.+
T Consensus 63 Vl~~e~-a~~ai~aGA~Fiv-----------------------SP------~~~~~vi~~a~~~~i~~ 100 (201)
T PRK06015 63 ILNAKQ-FEDAAKAGSRFIV-----------------------SP------GTTQELLAAANDSDVPL 100 (201)
T ss_pred CcCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHHcCCCE
Confidence 367776 5889999999987 44 35578999999999864
No 260
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=20.87 E-value=1.8e+02 Score=34.38 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 011170 81 GLDANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGL 150 (492)
Q Consensus 81 ~fD~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~ 150 (492)
...+++.++.|++.|++.+.+| ||+.. .=+-++.++|+++||++.+
T Consensus 18 ~~~~~elv~~A~~~G~~aiAiT---------------Dh~~~---------~g~~~f~~~~~~~gik~I~ 63 (874)
T PRK09532 18 ASQLPALVDRAIELGMPAIALT---------------DHGVM---------YGAIELLKVCRNKGIKPII 63 (874)
T ss_pred cCCHHHHHHHHHHCCCCEEEEe---------------cCCCh---------hhHHHHHHHHHHcCCeEEE
Confidence 3679999999999999988774 55322 2245899999999998754
No 261
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.82 E-value=7.2e+02 Score=25.40 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhc----cCCceeEEecCCCCCCCCCccccHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTR----YGDVREIWFDGAKGSNAPNMSYYFT 207 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~----YG~i~~lWfDg~~~~~~~~~~~~~~ 207 (492)
|.+.++++++.+.|.......=+| ..+-....|.+|+.+-++++++. ||.+..+-+=|+. .
T Consensus 180 ~~~~~~~~~~~eaGad~i~i~d~~----~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~~-----------~ 244 (338)
T TIGR01464 180 DATIEYLVEQVKAGAQAVQIFDSW----AGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKGA-----------G 244 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCc----cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCc-----------H
Confidence 345677777888898864443222 12223458888888777777664 3544456664421 2
Q ss_pred HHHHHHHhhCCCee
Q 011170 208 DWFAMVKELQSSIN 221 (492)
Q Consensus 208 ~~~~~i~~~qP~~v 221 (492)
.+++.+.++..+++
T Consensus 245 ~~~~~~~~~~~~~~ 258 (338)
T TIGR01464 245 HLLEELAETGADVV 258 (338)
T ss_pred HHHHHHHhcCCCEE
Confidence 34556666666665
No 262
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.73 E-value=8.9e+02 Score=24.52 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 011170 83 DANQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDVGLYLSPWDRHDPRY 162 (492)
Q Consensus 83 D~dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~G~Y~S~wD~~~~~y 162 (492)
++=+.++.++++|+..++++.-+ |.. .....++.=|.+-|++-++.+.+|-.+ .+
T Consensus 89 ~~i~~~~~a~~~Gadav~~~pP~----------y~~---------~~~~~i~~~f~~va~~~~lpi~lYn~~------g~ 143 (303)
T PRK03620 89 QAIEYAQAAERAGADGILLLPPY----------LTE---------APQEGLAAHVEAVCKSTDLGVIVYNRD------NA 143 (303)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC----------CCC---------CCHHHHHHHHHHHHHhCCCCEEEEcCC------CC
Confidence 45566778889999999985532 110 011356655666666678999999622 11
Q ss_pred CCCchhhHHHHHHHHHHHhccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCCCeeEec
Q 011170 163 GHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFS 224 (492)
Q Consensus 163 g~~~~y~~~~~~Ql~EL~t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 224 (492)
++-.+.+.+|..+...|..+ |...-+..++.++++...++..|++
T Consensus 144 -------~l~~~~l~~L~~~~pni~gi----------K~s~~d~~~~~~~~~~~~~~f~vl~ 188 (303)
T PRK03620 144 -------VLTADTLARLAERCPNLVGF----------KDGVGDIELMQRIVRALGDRLLYLG 188 (303)
T ss_pred -------CCCHHHHHHHHhhCCCEEEE----------EeCCCCHHHHHHHHHHcCCCeEEEe
Confidence 12246678887666665433 2222345667777777777777764
No 263
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=20.61 E-value=1.2e+02 Score=27.37 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=14.0
Q ss_pred CHHHH-HHHHHHcCCcEEEEEe
Q 011170 83 DANQW-VNTAAEAGVSLMILTA 103 (492)
Q Consensus 83 D~dqW-~~~ak~AGakyvvlTa 103 (492)
++..= -..|.+.||..|||.-
T Consensus 87 ~Ar~~~r~kAa~~gaN~Vvl~~ 108 (133)
T PRK10781 87 TARKRMQINASKMKANAVLLHS 108 (133)
T ss_pred HHHHHHHHHHHHcCCCEEEEEE
Confidence 44433 3457788999998854
No 264
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.55 E-value=1.3e+03 Score=26.41 Aligned_cols=199 Identities=17% Similarity=0.296 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCcEEEEEeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee----EEEeCCCCCCCC
Q 011170 85 NQWVNTAAEAGVSLMILTAKHHDGFCLWPSKFTEHSVAHSPWKHGRGDVVQELVNAAKARGVDV----GLYLSPWDRHDP 160 (492)
Q Consensus 85 dqW~~~ak~AGakyvvlTaKHHDGF~lWpS~~t~~~v~~sp~~~~krDiV~El~~Acrk~Glk~----G~Y~S~wD~~~~ 160 (492)
+.+.+.+|++|+.-|- |=---.+...+|-+| +| .|+.|+|+= +++|++.||-+ |=|.+. +|+..
T Consensus 52 ~~~i~k~k~~Gln~Iq-tYVfWn~Hep~~g~y-~F--------sG~~DlvkF-ikl~~~~GLyv~LRiGPyIca-Ew~~G 119 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQ-TYVFWNLHEPSPGKY-DF--------SGRYDLVKF-IKLIHKAGLYVILRIGPYICA-EWNFG 119 (649)
T ss_pred HHHHHHHHhcCCceee-eeeecccccCCCCcc-cc--------cchhHHHHH-HHHHHHCCeEEEecCCCeEEe-cccCC
Confidence 4678888999987442 211122445555555 44 356799985 99999999655 446553 33332
Q ss_pred C------------CC-CCchh---hHHHHHHHHH----HH-hccCCceeEEecCCCCCCCCCccccHHHHHHHHHhhCC-
Q 011170 161 R------------YG-HDLQY---NEYYLAQLQE----LL-TRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQS- 218 (492)
Q Consensus 161 ~------------yg-~~~~y---~~~~~~Ql~E----L~-t~YG~i~~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP- 218 (492)
. |. +++.| .+-+..+|-. |+ ++=|||=.+=...-.+. ....+.+..+++--
T Consensus 120 G~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~-------~~~~~~~~~k~y~~w 192 (649)
T KOG0496|consen 120 GLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGN-------YLRALGAEGKSYLKW 192 (649)
T ss_pred CcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhH-------HHHHHHHHHHHhhcc
Confidence 1 11 23333 2333344433 43 34467533322211110 12334456666554
Q ss_pred CeeEecCCCCCcccc--cCCCCCCCcceeeeccCCccccCCCccccccccCCCCC-CCCccccceeecCCCCCCC--CCC
Q 011170 219 SINIFSDAGPDVRWV--GNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKG-TDWLPAECDVSIRKGWFWH--KSE 293 (492)
Q Consensus 219 ~~vi~~~~g~d~rw~--gne~G~~~~~~w~~~~~~~~~~G~~~~~~~~~~g~~~~-~~w~P~E~d~~i~~~Wfy~--~~~ 293 (492)
+++++...++.+.|+ +... +.++.-++.|. ...++ .....-.+.+ ..| .|- -.|||=+ ...
T Consensus 193 ~a~m~~~l~~gvpw~mCk~~d--apd~~in~cng--~~c~~----~f~~pn~~~kP~~w--tE~----wtgwf~~wGg~~ 258 (649)
T KOG0496|consen 193 AAVLATSLGTGVPWVMCKQDD--APDPGINTCNG--FYCGD----TFKRPNSPNKPLVW--TEN----WTGWFTHWGGPH 258 (649)
T ss_pred ceEEEEecCCCCceeEecCCC--CCCccccccCC--ccchh----hhccCCCCCCCcee--ccc----ccchhhhhCCCC
Confidence 555555556666664 2221 22221111110 00000 0000001111 112 011 1467633 344
Q ss_pred CCCCHHHHHHHHHhhhccCceEE
Q 011170 294 TPKKLSELLEIYYNSVGRNCVML 316 (492)
Q Consensus 294 ~~ks~~~Li~~l~~~V~rngnlL 316 (492)
..+++++++-.++..+++||.+.
T Consensus 259 ~~R~~e~ia~~va~fls~ggs~v 281 (649)
T KOG0496|consen 259 PCRPVEDIALSVARFLSKGGSSV 281 (649)
T ss_pred CCCCHHHHHHHHHHHHhcCccce
Confidence 67899999999999999997655
No 265
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.21 E-value=1.6e+02 Score=30.99 Aligned_cols=52 Identities=40% Similarity=0.514 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHh--ccCCceeEEecCCCC
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLT--RYGDVREIWFDGAKG 196 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t--~YG~i~~lWfDg~~~ 196 (492)
+=+.++++|||++|+-|.. +.|-+|.|.| ..++||+. ..|+|..+-.++.-+
T Consensus 110 ~e~~~iveaA~~rgv~~me--g~~~R~~P~~-----------~~lke~l~~~~~Gdvk~v~~~~~f~ 163 (351)
T KOG2741|consen 110 AEAEEIVEAAEARGVFFME--GLWWRFFPRY-----------AKLKELLSSGVLGDVKSVEVEFGFP 163 (351)
T ss_pred HHHHHHHHHHHHcCcEEEe--eeeeecCcHH-----------HHHHHHHhccccccceEEEEecCCC
Confidence 6689999999999966543 4566777653 44566654 678887777765543
No 266
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=20.16 E-value=53 Score=23.94 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHHhhhhcccc
Q 011170 1 MPKLCCFVCLITILFQLTNLASS 23 (492)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (492)
|+|+.++.++++.++.+| |+.
T Consensus 1 MkKi~~~~i~~~~~~L~a--CQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAA--CQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHH--hhh
Confidence 777776665444433333 766
No 267
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=20.05 E-value=9e+02 Score=25.38 Aligned_cols=76 Identities=13% Similarity=0.305 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCCchhhHHHHHHHHHHHhcc---CCceeEEecCCCCCCCCCccccHHH
Q 011170 132 DVVQELVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRY---GDVREIWFDGAKGSNAPNMSYYFTD 208 (492)
Q Consensus 132 DiV~El~~Acrk~Glk~G~Y~S~wD~~~~~yg~~~~y~~~~~~Ql~EL~t~Y---G~i~~lWfDg~~~~~~~~~~~~~~~ 208 (492)
|++.+++++..+.|...-+++...+ +.+.+-....|.+|+.+-++++++.. |....+-..|. ...
T Consensus 214 d~~i~~~~~~ieaGa~~~i~i~~~~-s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~cG~-----------~~~ 281 (378)
T cd03308 214 PLMIKMGTATAPAPYPGPVFTPIPL-HLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFEGD-----------WER 281 (378)
T ss_pred HHHHHHHHHHHHhCCCCceEEEecc-cccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCC-----------cHH
Confidence 4455666777777877212232211 12223334588999888888877653 43234433332 123
Q ss_pred HHHHHHhhCCC
Q 011170 209 WFAMVKELQSS 219 (492)
Q Consensus 209 ~~~~i~~~qP~ 219 (492)
+++.+.++..+
T Consensus 282 ~l~~l~~~g~~ 292 (378)
T cd03308 282 YLEYLQELPKG 292 (378)
T ss_pred HHHHHHhcCCC
Confidence 45666676665
Done!