Your job contains 1 sequence.
>011171
MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI
IVNHQWVEDCIKQHRRLPERPYMLQSGQEIGPLLLEVPLFNMNSDRSNLDDNSKNEETDM
RFEVSELAGWKGSFLLNENLLPKFGKSENTSHKCKSKSFKRASKQEQRSSARNCFQDPPL
SGLIRMEYEESSSDSSIHSVRGKRKISKHEESSTHSSLRSLREKTKISKGIGSSSSAKPS
TKGRRLAKCIGRNGLESMLLDSDQDRAPVIRIAETSDDGFHKDGGINEGSEVIKEIEERD
FPALLQRESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVLACG
HRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRD
VFILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPLDPWTCIHC
KDLQMLYNRSNF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011171
(492 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2033691 - symbol:AT1G67180 species:3702 "Arabi... 526 1.5e-91 2
TAIR|locus:2132198 - symbol:AT4G02110 "AT4G02110" species... 195 1.0e-11 1
TAIR|locus:2078092 - symbol:AT3G05670 "AT3G05670" species... 159 5.2e-08 1
FB|FBgn0037344 - symbol:CG2926 species:7227 "Drosophila m... 160 1.3e-07 1
RGD|708360 - symbol:Phrf1 "PHD and ring finger domains 1"... 156 2.4e-07 1
UNIPROTKB|Q63625 - symbol:Phrf1 "PHD and RING finger doma... 156 2.4e-07 1
UNIPROTKB|I3LUY7 - symbol:I3LUY7 "Uncharacterized protein... 114 5.7e-06 1
TAIR|locus:2034934 - symbol:AT1G18770 species:3702 "Arabi... 106 4.1e-05 1
ASPGD|ASPL0000016982 - symbol:AN10434 species:162425 "Eme... 131 5.5e-05 1
UNIPROTKB|C9IZE0 - symbol:TRIM59 "Tripartite motif-contai... 87 5.9e-05 2
UNIPROTKB|C9J9F0 - symbol:TRIM59 "Tripartite motif-contai... 87 5.9e-05 2
TAIR|locus:2123446 - symbol:AT4G10940 "AT4G10940" species... 116 0.00012 1
UNIPROTKB|Q5F3B2 - symbol:RNF166 "RING finger protein 166... 117 0.00023 1
FB|FBgn0085337 - symbol:CG34308 species:7227 "Drosophila ... 99 0.00023 1
UNIPROTKB|E2RKD8 - symbol:RNF8 "Uncharacterized protein" ... 122 0.00025 1
UNIPROTKB|J9P6M8 - symbol:RNF8 "Uncharacterized protein" ... 122 0.00025 1
UNIPROTKB|Q1LZH3 - symbol:LOC526787 "LOC526787 protein" s... 123 0.00027 1
TAIR|locus:2122348 - symbol:AT4G09100 species:3702 "Arabi... 98 0.00030 1
UNIPROTKB|O76064 - symbol:RNF8 "E3 ubiquitin-protein liga... 118 0.00033 2
UNIPROTKB|Q5R4I2 - symbol:RNF8 "E3 ubiquitin-protein liga... 116 0.00034 2
ZFIN|ZDB-GENE-030131-5958 - symbol:wu:fi27d05 "wu:fi27d05... 122 0.00065 1
TAIR|locus:2096264 - symbol:AT3G05250 species:3702 "Arabi... 114 0.00070 1
UNIPROTKB|C9IZ30 - symbol:RNF182 "E3 ubiquitin-protein li... 94 0.00081 1
>TAIR|locus:2033691 [details] [associations]
symbol:AT1G67180 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] InterPro:IPR001841 InterPro:IPR018957
PROSITE:PS50089 SMART:SM00184 InterPro:IPR001357 Pfam:PF00097
Prosite:PS00518 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR017907
HSSP:P28990 EMBL:AC004146 IPI:IPI00547741 PIR:G96695
RefSeq:NP_176889.1 UniGene:At.50009 ProteinModelPortal:Q9ZW89
SMR:Q9ZW89 PRIDE:Q9ZW89 EnsemblPlants:AT1G67180.1 GeneID:843038
KEGG:ath:AT1G67180 TAIR:At1g67180 eggNOG:NOG311812
HOGENOM:HOG000077557 InParanoid:Q9ZW89 OMA:ICWTEFS PhylomeDB:Q9ZW89
ProtClustDB:CLSN2681961 Genevestigator:Q9ZW89 Uniprot:Q9ZW89
Length = 453
Score = 526 (190.2 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 91/157 (57%), Positives = 119/157 (75%)
Query: 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVED 399
++SC+ICWTEFSS+RG+L CGHRFCYSCIQ WAD + S RK +TCPLCK++F++ITK+ED
Sbjct: 297 QVSCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITITKIED 356
Query: 400 AATSDQKIYSQTIPCAWSTRDVFI-LPDGDSA--SVQP-SLLEACIECRSQEPQDLLIRC 455
A +SDQKIYSQT+P ST ++ + LP+ + ++ P + C C EP++LLIRC
Sbjct: 357 ADSSDQKIYSQTVPDLSSTNNILVVLPEEEEQRQTLNPLTRASGCSRCYLTEPEELLIRC 416
Query: 456 HLCQSRCIHCYCMDPPLDPWTCIHCKDLQMLYNRSNF 492
HLC R IH YC+DP L PWTC HC DLQM+Y+R N+
Sbjct: 417 HLCNFRRIHSYCLDPYLLPWTCNHCNDLQMMYHRRNY 453
Score = 406 (148.0 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 77/138 (55%), Positives = 99/138 (71%)
Query: 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI 60
ME+VVATVSGYHG++RF LIKLIS+SGASYVG MS+S THLVCWKFEG+K+ LAKKF T+
Sbjct: 1 MENVVATVSGYHGSDRFKLIKLISHSGASYVGAMSRSITHLVCWKFEGKKYDLAKKFGTV 60
Query: 61 IVNHQWVEDCIKQHRRLPERPYMLQSGQEIGPLLLEVPLFN--------MNSDRSNLDDN 112
+VNH+WVE+C+K+ RR+ E PYM SG+E+GPL++E+P + +N D
Sbjct: 61 VVNHRWVEECVKEGRRVSETPYMFDSGEEVGPLMIELPAVSEEAKVTKKVNKASETFDKY 120
Query: 113 SKNEETDMRFEVSELAGW 130
N + SELA W
Sbjct: 121 FSNGGENRSGSTSELATW 138
>TAIR|locus:2132198 [details] [associations]
symbol:AT4G02110 "AT4G02110" species:3702 "Arabidopsis
thaliana" [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] InterPro:IPR001357
Pfam:PF00533 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161493
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AF001308
KO:K10728 IPI:IPI00534436 IPI:IPI01020132 PIR:T01512
RefSeq:NP_192120.4 UniGene:At.54093 ProteinModelPortal:O04251
SMR:O04251 PaxDb:O04251 PRIDE:O04251 GeneID:828135
KEGG:ath:AT4G02110 TAIR:At4g02110 eggNOG:KOG1929
HOGENOM:HOG000176902 InParanoid:O04251 OMA:CISADYL
Genevestigator:O04251 Uniprot:O04251
Length = 1329
Score = 195 (73.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTM-SKSTTHLVCWKFEGEKHSLAKKFRTI 60
+++V ++GY G +R ++++++ G + + + THL+C+KFEGEK+ LAK+ + I
Sbjct: 110 KALVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRI 169
Query: 61 -IVNHQWVEDCIKQHRRLPERPYMLQSGQEI 90
+VNH+W+EDC+K + LPE Y + SG E+
Sbjct: 170 KLVNHRWLEDCLKNWKLLPEVDYEI-SGYEL 199
>TAIR|locus:2078092 [details] [associations]
symbol:AT3G05670 "AT3G05670" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 SMART:SM00184 SMART:SM00249 Prosite:PS00518
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR017907 EMBL:AC011620 HSSP:Q14839
eggNOG:NOG300312 EMBL:AY120751 EMBL:BT002568 IPI:IPI00528739
RefSeq:NP_187218.1 UniGene:At.18633 ProteinModelPortal:Q9M9X2
SMR:Q9M9X2 EnsemblPlants:AT3G05670.1 GeneID:819734
KEGG:ath:AT3G05670 TAIR:At3g05670 HOGENOM:HOG000093083
InParanoid:Q9M9X2 OMA:CKQRFRT ProtClustDB:CLSN2684496
Genevestigator:Q9M9X2 Uniprot:Q9M9X2
Length = 883
Score = 159 (61.0 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 57/209 (27%), Positives = 87/209 (41%)
Query: 286 INEGSEVIKEIEERDFPALLQRESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVI 345
+N S + + +D P L + + G +E +VK D I++V C I
Sbjct: 371 VNHASSIRQTTVNKDLPQLRKSPVKKGEKKVE----LVKR-DVIKNV----------CGI 415
Query: 346 CWTEFSSTR--GVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAAT 402
C +E R G L C H FC++CI W+ + S CPLCK F +I+K +T
Sbjct: 416 CLSEEDMRRLKGTLDCCSHYFCFTCIMEWS------KVESRCPLCKQRFRTISKPA-RST 468
Query: 403 SDQKIYSQTIPCAWSTRDVFILPDGDS--ASVQPSLLEACIECRSQEPQDLLIRCHLCQS 460
+ IP RD P + + + P C EC + L++ C LC S
Sbjct: 469 PGVDLREVVIPVP--ERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDS 526
Query: 461 RCIHCYCM----DPPLDPWTCIHCKDLQM 485
H YC+ + P W C C+ + +
Sbjct: 527 SA-HTYCVGLGREVPEGNWYCEGCRPVAL 554
>FB|FBgn0037344 [details] [associations]
symbol:CG2926 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR001841
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50016 PROSITE:PS50089 SMART:SM00184 SMART:SM00249
Prosite:PS00518 EMBL:AE014297 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR017907 GO:GO:0000381 HSSP:Q9UIG0
GeneTree:ENSGT00530000063661 FlyBase:FBgn0037344 RefSeq:NP_649554.1
ProteinModelPortal:Q9VNE0 SMR:Q9VNE0 IntAct:Q9VNE0 MINT:MINT-746219
STRING:Q9VNE0 PRIDE:Q9VNE0 EnsemblMetazoa:FBtr0078752 GeneID:40676
KEGG:dme:Dmel_CG2926 UCSC:CG2926-RA InParanoid:Q9VNE0 OMA:YEDLFEP
PhylomeDB:Q9VNE0 GenomeRNAi:40676 NextBio:819988
ArrayExpress:Q9VNE0 Bgee:Q9VNE0 Uniprot:Q9VNE0
Length = 2296
Score = 160 (61.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 41/147 (27%), Positives = 68/147 (46%)
Query: 343 CVICWTEFSSTR-GVLA-CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDA 400
C IC F G A C H FC +CI W+ R + TCP+ + F I V D+
Sbjct: 155 CPICLLTFRQQEIGTPATCEHIFCAACIDAWS------RNVQTCPIDRIEFDRII-VRDS 207
Query: 401 ATSDQKIYSQTIPCAWSTRDVFILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQS 460
S + + + + S ++ + + D+A++ + C C S + +D+++ C C +
Sbjct: 208 YASRRVVREVRLDLSKSNTELVVDDEADTAALSEEEVTNCEICESPDREDVMLLCDSC-N 266
Query: 461 RCIHCYCMDPPL-----DPWTCIHCKD 482
+ H C+DPPL W C +C D
Sbjct: 267 QGYHMDCLDPPLYEIPAGSWYCDNCID 293
>RGD|708360 [details] [associations]
symbol:Phrf1 "PHD and ring finger domains 1" species:10116
"Rattus norvegicus" [GO:0006366 "transcription from RNA polymerase
II promoter" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IMP]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001841 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00628 Pfam:PF13639 PROSITE:PS50016 PROSITE:PS50089
SMART:SM00184 SMART:SM00249 RGD:708360 Prosite:PS00518
GO:GO:0019904 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0006366 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR017907 EMBL:AC118351 CTD:57661
eggNOG:NOG300312 HOVERGEN:HBG108250 OMA:YMKKLHM OrthoDB:EOG4MSD0F
GeneTree:ENSGT00530000063661 HOGENOM:HOG000082501 EMBL:U49057
IPI:IPI00211009 IPI:IPI00915115 PIR:T31422 RefSeq:NP_620793.1
UniGene:Rn.10530 ProteinModelPortal:Q63625 STRING:Q63625
PRIDE:Q63625 Ensembl:ENSRNOT00000023376 Ensembl:ENSRNOT00000051755
GeneID:245925 KEGG:rno:245925 UCSC:RGD:708360 InParanoid:Q63625
NextBio:623186 ArrayExpress:Q63625 Genevestigator:Q63625
Uniprot:Q63625
Length = 1685
Score = 156 (60.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 65/223 (29%), Positives = 93/223 (41%)
Query: 273 AETSDDGFHKDGGINEGSEVIKEIEERDFPALLQRESQDGCSGIENS-NGMVKNTDRIE- 330
AE S +G +D + GSE + + + L + E + SG E+S +G+ T +E
Sbjct: 31 AEESSNGHSEDSEDDTGSEQDDDTDGEETEGLSEEEDPEDRSGSEDSEDGIEVPTAAVET 90
Query: 331 --HVNRSSTSGE----LSCVICWTEFSSTR-GVL-ACGHRFCYSCIQNWADHMASVRKIS 382
+ SST SC IC F G C H FC CI W+ R +
Sbjct: 91 QRKLEASSTPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWS------RNAN 144
Query: 383 TCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILPDGDSASVQPSLLEACIE 442
+CP+ + F I A + KI + IP +TR D ++ P+ E C
Sbjct: 145 SCPVDRTIFKCICI---RAQFNGKILKK-IPVE-NTR---ACEDEEAEEEDPTFCEVC-- 194
Query: 443 CRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHC 480
RS +D L+ C C + H C+DPPL D W C C
Sbjct: 195 GRSDR-EDRLLLCDGCDAG-YHMECLDPPLQEVPVDEWFCPEC 235
>UNIPROTKB|Q63625 [details] [associations]
symbol:Phrf1 "PHD and RING finger domain-containing protein
1" species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 SMART:SM00184 SMART:SM00249 RGD:708360
Prosite:PS00518 GO:GO:0019904 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0006366 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR017907 EMBL:AC118351 CTD:57661
eggNOG:NOG300312 HOVERGEN:HBG108250 OMA:YMKKLHM OrthoDB:EOG4MSD0F
GeneTree:ENSGT00530000063661 HOGENOM:HOG000082501 EMBL:U49057
IPI:IPI00211009 IPI:IPI00915115 PIR:T31422 RefSeq:NP_620793.1
UniGene:Rn.10530 ProteinModelPortal:Q63625 STRING:Q63625
PRIDE:Q63625 Ensembl:ENSRNOT00000023376 Ensembl:ENSRNOT00000051755
GeneID:245925 KEGG:rno:245925 UCSC:RGD:708360 InParanoid:Q63625
NextBio:623186 ArrayExpress:Q63625 Genevestigator:Q63625
Uniprot:Q63625
Length = 1685
Score = 156 (60.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 65/223 (29%), Positives = 93/223 (41%)
Query: 273 AETSDDGFHKDGGINEGSEVIKEIEERDFPALLQRESQDGCSGIENS-NGMVKNTDRIE- 330
AE S +G +D + GSE + + + L + E + SG E+S +G+ T +E
Sbjct: 31 AEESSNGHSEDSEDDTGSEQDDDTDGEETEGLSEEEDPEDRSGSEDSEDGIEVPTAAVET 90
Query: 331 --HVNRSSTSGE----LSCVICWTEFSSTR-GVL-ACGHRFCYSCIQNWADHMASVRKIS 382
+ SST SC IC F G C H FC CI W+ R +
Sbjct: 91 QRKLEASSTPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWS------RNAN 144
Query: 383 TCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILPDGDSASVQPSLLEACIE 442
+CP+ + F I A + KI + IP +TR D ++ P+ E C
Sbjct: 145 SCPVDRTIFKCICI---RAQFNGKILKK-IPVE-NTR---ACEDEEAEEEDPTFCEVC-- 194
Query: 443 CRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHC 480
RS +D L+ C C + H C+DPPL D W C C
Sbjct: 195 GRSDR-EDRLLLCDGCDAG-YHMECLDPPLQEVPVDEWFCPEC 235
>UNIPROTKB|I3LUY7 [details] [associations]
symbol:I3LUY7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051301 "cell division" evidence=IEA] [GO:0016881
"acid-amino acid ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR017335 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00400000022349 PANTHER:PTHR15067:SF3 EMBL:CU855572
Ensembl:ENSSSCT00000029099 OMA:VEMKEHR Uniprot:I3LUY7
Length = 135
Score = 114 (45.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 299 RDFPALLQRESQD-GCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL 357
+DF A++Q ++++ + E + + + H+N EL C+IC +E+ L
Sbjct: 9 KDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVTL 66
Query: 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C H FC CI W RK+ CP+C+ S T
Sbjct: 67 NCAHSFCSYCINEWMK-----RKVE-CPICRKDIKSKT 98
>TAIR|locus:2034934 [details] [associations]
symbol:AT1G18770 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC011809
eggNOG:NOG268870 IPI:IPI00542029 RefSeq:NP_173312.1
UniGene:At.51668 ProteinModelPortal:Q3ED97 SMR:Q3ED97
EnsemblPlants:AT1G18770.1 GeneID:838459 KEGG:ath:AT1G18770
TAIR:At1g18770 HOGENOM:HOG000131773 InParanoid:Q3ED97 OMA:NAKIDGY
PhylomeDB:Q3ED97 ProtClustDB:CLSN2914190 Genevestigator:Q3ED97
Uniprot:Q3ED97
Length = 106
Score = 106 (42.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 311 DGCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGV--LACGHRFCYSCI 368
DG + S +VK+ R + +S++GE+ C+IC EFS R V L CGH F C+
Sbjct: 28 DGYNPTPASKLVVKSLARKIYKMTTSSTGEM-CIICLEEFSEGRRVVTLPCGHDFDDECV 86
Query: 369 QNWADHMASVRKISTCPLCK 388
W + S CPLC+
Sbjct: 87 LKWFETNHS------CPLCR 100
>ASPGD|ASPL0000016982 [details] [associations]
symbol:AN10434 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000018 "regulation of DNA
recombination" evidence=IEA] [GO:0006301 "postreplication repair"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 EMBL:BN001302
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 OMA:DNTHLIT
ProteinModelPortal:C8V3U9 EnsemblFungi:CADANIAT00005074
Uniprot:C8V3U9
Length = 841
Score = 131 (51.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTII 61
E ++S Y G R L LI+ +GA T+ + THLV EK S A+++ +
Sbjct: 342 EKFKISLSNYVGEARSYLEHLITATGAECTKTLRQENTHLVTAHDNSEKCSAAREWNIHV 401
Query: 62 VNHQWVEDCIKQHRRLPE 79
VNH W+E+C Q R LPE
Sbjct: 402 VNHLWLEECYAQWRLLPE 419
>UNIPROTKB|C9IZE0 [details] [associations]
symbol:TRIM59 "Tripartite motif-containing protein 59"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB
cascade" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC024221 OrthoDB:EOG4K3KX1 HGNC:HGNC:30834
HOGENOM:HOG000199013 IPI:IPI00945336 ProteinModelPortal:C9IZE0
SMR:C9IZE0 STRING:C9IZE0 Ensembl:ENST00000471155
ArrayExpress:C9IZE0 Bgee:C9IZE0 Uniprot:C9IZE0
Length = 114
Score = 87 (35.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQN 370
EL+C IC++ F R VL C H FC +C++N
Sbjct: 7 ELTCPICYSIFEDPR-VLPCSHTFCRNCLEN 36
Score = 38 (18.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 423 ILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCM 468
I P G + L A IE QE ++ C + ++ YC+
Sbjct: 65 IAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCL 110
>UNIPROTKB|C9J9F0 [details] [associations]
symbol:TRIM59 "Tripartite motif-containing protein 59"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB
cascade" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC024221 HGNC:HGNC:30834 HOGENOM:HOG000199013 IPI:IPI00945495
ProteinModelPortal:C9J9F0 SMR:C9J9F0 STRING:C9J9F0
Ensembl:ENST00000494486 ArrayExpress:C9J9F0 Bgee:C9J9F0
Uniprot:C9J9F0
Length = 111
Score = 87 (35.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQN 370
EL+C IC++ F R VL C H FC +C++N
Sbjct: 7 ELTCPICYSIFEDPR-VLPCSHTFCRNCLEN 36
Score = 38 (18.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 423 ILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCM 468
I P G + L A IE QE ++ C + ++ YC+
Sbjct: 65 IAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCL 110
>TAIR|locus:2123446 [details] [associations]
symbol:AT4G10940 "AT4G10940" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50089 SMART:SM00184
SMART:SM00249 Prosite:PS00518 EMBL:CP002687 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR017907
IPI:IPI00519012 RefSeq:NP_567371.1 UniGene:At.54267
ProteinModelPortal:F4JN66 SMR:F4JN66 EnsemblPlants:AT4G10940.1
GeneID:826693 KEGG:ath:AT4G10940 OMA:DEDCCIE Uniprot:F4JN66
Length = 192
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 30/80 (37%), Positives = 38/80 (47%)
Query: 319 SNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMAS 377
SN + +EH + GE C IC + RGVL C H FC+ CI NW+ M
Sbjct: 8 SNLVEDEAVEVEHNGMTEIEGE-RCGICM-DIIIDRGVLDCCQHWFCFECIDNWSTIM-- 63
Query: 378 VRKISTCPLCKASFMSITKV 397
+ CPLC+ F IT V
Sbjct: 64 ----NLCPLCQREFQLITCV 79
>UNIPROTKB|Q5F3B2 [details] [associations]
symbol:RNF166 "RING finger protein 166" species:9031
"Gallus gallus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR015880 PROSITE:PS50089 SMART:SM00184 SMART:SM00355
Prosite:PS00518 Pfam:PF05605 GO:GO:0046872 GO:GO:0008270
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR003903 PROSITE:PS50330 InterPro:IPR017907
InterPro:IPR008598 HOGENOM:HOG000230946 HOVERGEN:HBG074331
EMBL:AJ851738 IPI:IPI00589511 RefSeq:NP_001012953.1
UniGene:Gga.8507 ProteinModelPortal:Q5F3B2 GeneID:425360
KEGG:gga:425360 CTD:115992 eggNOG:NOG149065 InParanoid:Q5F3B2
OrthoDB:EOG4DJJX8 NextBio:20827453 ArrayExpress:Q5F3B2
Uniprot:Q5F3B2
Length = 244
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 38/148 (25%), Positives = 58/148 (39%)
Query: 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVED 399
+ SC IC F G+ CGH FC C+Q + + CPLC+ F KVE
Sbjct: 37 QFSCPICLEVFHRAVGIAGCGHTFCGECLQPCLQVPSPL-----CPLCRMPF-DPKKVEK 90
Query: 400 AATSDQKIYSQTIPCAWSTRDVFILPDGDSASVQPSLLEACIECRS---QEPQDLLIRCH 456
A++ ++++ S PC ++ V + S + E C P I +
Sbjct: 91 ASSVEKQLSSYKAPCRGCSKKVTLAKMRSHVSSCAKVQEQMANCPKFVPVVPTSQPIPSN 150
Query: 457 LCQSRCIHC-YCMDPPLDPWTCI-HCKD 482
+ C YC LD + HC +
Sbjct: 151 IPNRSTFVCPYCGARNLDQQELVKHCME 178
>FB|FBgn0085337 [details] [associations]
symbol:CG34308 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000014107 EMBL:BT029722
RefSeq:NP_001097770.1 UniGene:Dm.36040 SMR:A1A749
EnsemblMetazoa:FBtr0112504 GeneID:5740483 KEGG:dme:Dmel_CG34308
UCSC:CG34308-RA FlyBase:FBgn0085337 InParanoid:A1A749
NextBio:20891521 Uniprot:A1A749
Length = 108
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 24/77 (31%), Positives = 36/77 (46%)
Query: 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAA 401
+C++C S R V CGH FC CI NW + S + + CP C++ T +
Sbjct: 33 TCLVCMQTAESPR-VSFCGHHFCSQCIYNW---IRSQKYQAKCPYCQSLIGENTLIT-IT 87
Query: 402 TSDQKIYSQTIPCAWST 418
++ Y + P WST
Sbjct: 88 MRRRRTYFRANPL-WST 103
>UNIPROTKB|E2RKD8 [details] [associations]
symbol:RNF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070936 "protein K48-linked ubiquitination"
evidence=IEA] [GO:0070535 "histone H2A K63-linked ubiquitination"
evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=IEA] [GO:0045900 "negative regulation of translational
elongation" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0033523 "histone H2B ubiquitination"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000253
InterPro:IPR008984 InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639
PIRSF:PIRSF037950 PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184
SMART:SM00240 Prosite:PS00518 GO:GO:0005634 GO:GO:0051301
GO:GO:0046872 GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006302 GO:GO:0016881 GO:GO:0045739 GO:GO:0000151
InterPro:IPR017907 GO:GO:0033523 GeneTree:ENSGT00400000022349
PANTHER:PTHR15067:SF3 EMBL:AAEX03008298 Ensembl:ENSCAFT00000002283
Uniprot:E2RKD8
Length = 487
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 32/113 (28%), Positives = 53/113 (46%)
Query: 286 INEGSEVIKEIE--ERDFPALLQRESQDGCSGIENSNGMVKNTDRI-EHVNRSSTSGELS 342
+ E +++E+ ++DF A++Q ++++ E M + + HVN EL
Sbjct: 346 LQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHVN-DVLENELQ 404
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C+IC +E+ L C H FC CI W RK+ CP+C+ S T
Sbjct: 405 CIIC-SEYFIEAVTLNCAHSFCSYCINEWMK-----RKVE-CPICRKDIKSKT 450
>UNIPROTKB|J9P6M8 [details] [associations]
symbol:RNF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051301 "cell division" evidence=IEA]
[GO:0016881 "acid-amino acid ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR017335 Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950
PROSITE:PS50006 PROSITE:PS50089 SMART:SM00184 SMART:SM00240
Prosite:PS00518 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006974 GO:GO:0016567 Gene3D:2.60.200.20
SUPFAM:SSF49879 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016881
InterPro:IPR017907 KO:K10667 CTD:9025 GeneTree:ENSGT00400000022349
OMA:EVTEEDW PANTHER:PTHR15067:SF3 EMBL:AAEX03008298
RefSeq:XP_864730.1 ProteinModelPortal:J9P6M8
Ensembl:ENSCAFT00000047572 GeneID:481775 KEGG:cfa:481775
Uniprot:J9P6M8
Length = 487
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 32/113 (28%), Positives = 53/113 (46%)
Query: 286 INEGSEVIKEIE--ERDFPALLQRESQDGCSGIENSNGMVKNTDRI-EHVNRSSTSGELS 342
+ E +++E+ ++DF A++Q ++++ E M + + HVN EL
Sbjct: 346 LQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHVN-DVLENELQ 404
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C+IC +E+ L C H FC CI W RK+ CP+C+ S T
Sbjct: 405 CIIC-SEYFIEAVTLNCAHSFCSYCINEWMK-----RKVE-CPICRKDIKSKT 450
>UNIPROTKB|Q1LZH3 [details] [associations]
symbol:LOC526787 "LOC526787 protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000315
InterPro:IPR003877 Pfam:PF00622 Pfam:PF00643 PROSITE:PS50089
PROSITE:PS50119 SMART:SM00184 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
InterPro:IPR003879 PRINTS:PR01407 GeneTree:ENSGT00700000104280
EMBL:DAAA02049532 OMA:RLCKNVI EMBL:BC115998 IPI:IPI00692594
UniGene:Bt.61444 Ensembl:ENSBTAT00000037969 eggNOG:NOG253021
HOGENOM:HOG000133081 HOVERGEN:HBG085919 InParanoid:Q1LZH3
OrthoDB:EOG4R23TJ Uniprot:Q1LZH3
Length = 616
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 41/160 (25%), Positives = 77/160 (48%)
Query: 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS---ITK 396
++ C +C F + ACGH FC SC+Q + D+ A++ + CP C+ SF + + K
Sbjct: 59 QVLCPVCLEVFRNPV-TTACGHNFCMSCLQGFWDYQATMGEPLYCPQCRESFPTRPRLCK 117
Query: 397 ---VEDAATSDQKIYSQTIPCAWSTRDVFILPDGDSASVQPSLLEACIECRSQEPQDLLI 453
+E+ T + QT+ + S +P A + +++C++C + + L
Sbjct: 118 NVILEEMVTCFTQAKGQTLGSSRSLAGPRDVPCDFCAPEKLKSVKSCLQCMASLCEKHL- 176
Query: 454 RCHLCQSRCIHCY-CMDPPLDPWT--CIHCKDLQMLYNRS 490
R HL + + H + ++P D + C + L+ LY R+
Sbjct: 177 RSHL-EDQVFHGHQLLEPVWDLKSRLCRKHRKLRRLYCRT 215
>TAIR|locus:2122348 [details] [associations]
symbol:AT4G09100 species:3702 "Arabidopsis thaliana"
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC005359 HOGENOM:HOG000237642 EMBL:AL161514 EMBL:DQ059117
EMBL:BT024815 IPI:IPI00531797 PIR:B85092 RefSeq:NP_192649.1
UniGene:At.54223 ProteinModelPortal:Q9M0R7 SMR:Q9M0R7
EnsemblPlants:AT4G09100.1 GeneID:826488 KEGG:ath:AT4G09100
TAIR:At4g09100 eggNOG:NOG246260 InParanoid:Q9M0R7 OMA:IGELECV
PhylomeDB:Q9M0R7 ProtClustDB:CLSN2915828 Genevestigator:Q9M0R7
GermOnline:AT4G09100 Uniprot:Q9M0R7
Length = 132
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 339 GELSCVICWTEFS---STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389
GEL CV+C EF + R V C H F C+ W H STCP+C+A
Sbjct: 81 GELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHS------STCPICRA 128
>UNIPROTKB|O76064 [details] [associations]
symbol:RNF8 "E3 ubiquitin-protein ligase RNF8" species:9606
"Homo sapiens" [GO:0007067 "mitosis" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0030496 "midbody" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010212 "response
to ionizing radiation" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0042393 "histone binding" evidence=IDA]
[GO:0045739 "positive regulation of DNA repair" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IDA] [GO:0033522
"histone H2A ubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000151 "ubiquitin ligase complex"
evidence=IDA] [GO:0045900 "negative regulation of translational
elongation" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IPI] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0000781 "chromosome, telomeric
region" evidence=ISS] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0036297 "interstrand cross-link repair"
evidence=TAS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0043486 "histone exchange"
evidence=ISS] [GO:0070535 "histone H2A K63-linked ubiquitination"
evidence=IMP;IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0033523 "histone H2B ubiquitination" evidence=ISS] [GO:0070534
"protein K63-linked ubiquitination" evidence=IDA] [GO:0045190
"isotype switching" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950 PROSITE:PS50006
PROSITE:PS50089 SMART:SM00184 SMART:SM00240 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005634 GO:GO:0042803 EMBL:CH471081
GO:GO:0051301 GO:GO:0007067 GO:GO:0007286 GO:GO:0046872
GO:GO:0008270 GO:GO:0003682 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0010212 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511
GO:GO:0043486 GO:GO:0045190 GO:GO:0004842 GO:GO:0030496
GO:GO:0042393 GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907
GO:GO:0070936 GO:GO:0051865 GO:GO:0000781 GO:GO:0006303
GO:GO:0033523 GO:GO:0036297 GO:GO:0045900 GO:GO:0035861
GO:GO:0070535 HOVERGEN:HBG023954 KO:K10667 CTD:9025
eggNOG:NOG242257 HOGENOM:HOG000154169 OMA:EVTEEDW OrthoDB:EOG4TF0KP
PANTHER:PTHR15067:SF3 EMBL:AB012770 EMBL:AF334675 EMBL:AB014546
EMBL:AK298319 EMBL:BT007446 EMBL:AK222765 EMBL:AL096712
EMBL:BC007517 IPI:IPI00022561 IPI:IPI00923427 RefSeq:NP_003949.1
RefSeq:NP_898901.1 UniGene:Hs.485278 PDB:2CSW PDB:2PIE PDB:4AYC
PDB:4EPO PDBsum:2CSW PDBsum:2PIE PDBsum:4AYC PDBsum:4EPO
ProteinModelPortal:O76064 SMR:O76064 DIP:DIP-31265N IntAct:O76064
MINT:MINT-1459889 STRING:O76064 PhosphoSite:O76064 PaxDb:O76064
PRIDE:O76064 DNASU:9025 Ensembl:ENST00000229866
Ensembl:ENST00000373479 Ensembl:ENST00000394443
Ensembl:ENST00000469731 GeneID:9025 KEGG:hsa:9025 UCSC:uc003onq.4
GeneCards:GC06P037321 HGNC:HGNC:10071 MIM:611685 neXtProt:NX_O76064
PharmGKB:PA34445 PhylomeDB:O76064 EvolutionaryTrace:O76064
GenomeRNAi:9025 NextBio:33813 ArrayExpress:O76064 Bgee:O76064
CleanEx:HS_RNF8 Genevestigator:O76064 GermOnline:ENSG00000112130
Uniprot:O76064
Length = 485
Score = 118 (46.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 298 ERDFPALLQRESQDGCSGIENSNGMVKNTDRI-EHVNRSSTSGELSCVICWTEFSSTRGV 356
++DF A++Q ++++ E M + + H+N EL C+IC +E+
Sbjct: 358 KKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVT 415
Query: 357 LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
L C H FC CI W RKI CP+C+ S T
Sbjct: 416 LNCAHSFCSYCINEWMK-----RKIE-CPICRKDIKSKT 448
Score = 46 (21.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 34/116 (29%), Positives = 52/116 (44%)
Query: 114 KNEE--TDMRFEVSELAGWKGSFLLNENLLPKFGKSENTSHKCKS-KSFKRASKQEQRSS 170
KN+E T +F + ELAG G+ E P KS+ C+S + K K E S+
Sbjct: 146 KNKELRTKRKFSLDELAG-PGA----EG--PSNLKSKINKVSCESGQPVKSQGKGEVAST 198
Query: 171 ARNCFQDPPLSGLIRMEYEEXXXXXXXXXVRGKRKISK--HEESSTHSSL--RSLR 222
+ DP L+ L E G K+++ HE+ +++SS RSL+
Sbjct: 199 PSDNL-DPKLTAL------EPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQ 247
>UNIPROTKB|Q5R4I2 [details] [associations]
symbol:RNF8 "E3 ubiquitin-protein ligase RNF8" species:9601
"Pongo abelii" [GO:0000151 "ubiquitin ligase complex" evidence=ISS]
[GO:0000781 "chromosome, telomeric region" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0008270 "zinc
ion binding" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0033522 "histone H2A ubiquitination"
evidence=ISS] [GO:0033523 "histone H2B ubiquitination"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0042393 "histone binding" evidence=ISS]
[GO:0042803 "protein homodimerization activity" evidence=ISS]
[GO:0043486 "histone exchange" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0045900 "negative regulation of
translational elongation" evidence=ISS] [GO:0070534 "protein
K63-linked ubiquitination" evidence=ISS] [GO:0070535 "histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0070936 "protein
K48-linked ubiquitination" evidence=ISS] InterPro:IPR001841
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR017335
Pfam:PF00498 Pfam:PF13639 PIRSF:PIRSF037950 PROSITE:PS50006
PROSITE:PS50089 SMART:SM00184 SMART:SM00240 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005634 GO:GO:0042803 GO:GO:0051301
GO:GO:0007067 GO:GO:0007286 GO:GO:0046872 GO:GO:0008270
GO:GO:0003682 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0010212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043486
GO:GO:0045190 GO:GO:0004842 GO:GO:0030496 GO:GO:0042393
GO:GO:0045739 GO:GO:0000151 InterPro:IPR017907 GO:GO:0070936
GO:GO:0000781 GO:GO:0006303 GO:GO:0033523 GO:GO:0045900
GO:GO:0035861 GO:GO:0070535 HSSP:O76064 HOVERGEN:HBG023954
KO:K10667 CTD:9025 PANTHER:PTHR15067:SF3 EMBL:CR861266
RefSeq:NP_001126963.1 UniGene:Pab.1586 ProteinModelPortal:Q5R4I2
SMR:Q5R4I2 GeneID:100173982 KEGG:pon:100173982 InParanoid:Q5R4I2
Uniprot:Q5R4I2
Length = 486
Score = 116 (45.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 298 ERDFPALLQRESQD-GCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGV 356
++DF A++Q ++++ + E + + + H+N EL C+IC +E+
Sbjct: 359 KKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVT 416
Query: 357 LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
L C H FC CI W RKI CP+C+ S T
Sbjct: 417 LNCAHSFCSYCINEWMK-----RKIE-CPICRKDIKSKT 449
Score = 48 (22.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 32/109 (29%), Positives = 49/109 (44%)
Query: 114 KNEE--TDMRFEVSELAGWKGSFLLNENLLPKFGKSENTSHKCKS-KSFKRASKQEQRSS 170
KN+E T +F + ELAG G+ E P KS+ C+S +S K K E S+
Sbjct: 146 KNKELRTKRKFSLDELAG-PGA----EG--PSNLKSKINKVSCESGQSVKSQGKGEVSST 198
Query: 171 ARNCFQDPPLSGLIRMEYEEXXXXXXXXXVRGKRKISK--HEESSTHSS 217
DP L+ L E G K+++ HE+++++SS
Sbjct: 199 PSENL-DPKLTVL-----EPSKKTTGAPIYLGFPKVTEVHHEQTASNSS 241
>ZFIN|ZDB-GENE-030131-5958 [details] [associations]
symbol:wu:fi27d05 "wu:fi27d05" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-030131-5958 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00440000035370 EMBL:CR407597 IPI:IPI00489836
Ensembl:ENSDART00000112597 Bgee:E7FBY1 Uniprot:E7FBY1
Length = 1006
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 40/146 (27%), Positives = 68/146 (46%)
Query: 295 EIEER-DFPALLQRESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSST 353
+++ER +F ++RES S E+S G N+ H ++ + + E CVIC F+
Sbjct: 788 DLDERVNFREQIKRES----SFSEDSKG---NSG---HDSKDAAAEEDKCVICMDSFTD- 836
Query: 354 RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIP 413
+ L CGH FC C++ + M S+ CP+CK F + + T S ++P
Sbjct: 837 KEKLKCGHEFCRDCLKQSVESMGSI-----CPVCKEVFGKLEGNQPKGTMQVNKSSLSLP 891
Query: 414 ----CAWSTRDVFILPDGDSASVQPS 435
C S ++ +P G + P+
Sbjct: 892 GYPHCG-SIEILYNIPSGTQTNKHPN 916
>TAIR|locus:2096264 [details] [associations]
symbol:AT3G05250 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0007165 "signal transduction"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] InterPro:IPR001841 InterPro:IPR018957 PROSITE:PS50089
SMART:SM00184 Pfam:PF00097 Prosite:PS00518 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P28990
EMBL:BT008778 EMBL:DQ086839 EMBL:AK117770 IPI:IPI00545519
RefSeq:NP_187176.2 UniGene:At.40705 ProteinModelPortal:Q8GYA2
SMR:Q8GYA2 IntAct:Q8GYA2 PRIDE:Q8GYA2 EnsemblPlants:AT3G05250.1
GeneID:819689 KEGG:ath:AT3G05250 TAIR:At3g05250 eggNOG:NOG245952
HOGENOM:HOG000083472 InParanoid:Q8GYA2 OMA:PLCKTEN PhylomeDB:Q8GYA2
ProtClustDB:CLSN2690722 Genevestigator:Q8GYA2 Uniprot:Q8GYA2
Length = 278
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNW---ADHMASVRKIS-TCPLCKASFMSITKVE 398
C IC +F + C H+FC++CI+ W AS ++ S TCPLCK +SI
Sbjct: 22 CPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSIIHNY 81
Query: 399 DAATSDQKIYSQTIP 413
D + ++ IP
Sbjct: 82 DGCSFERHYIDPNIP 96
>UNIPROTKB|C9IZ30 [details] [associations]
symbol:RNF182 "E3 ubiquitin-protein ligase RNF182"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AL138718 HGNC:HGNC:28522
IPI:IPI00945038 ProteinModelPortal:C9IZ30 SMR:C9IZ30 STRING:C9IZ30
Ensembl:ENST00000423553 ArrayExpress:C9IZ30 Bgee:C9IZ30
Uniprot:C9IZ30
Length = 82
Score = 94 (38.1 bits), Expect = 0.00081, P = 0.00081
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 330 EHVNRSSTSGELSCVICWTEFSSTRG---VLACGHRFCYSCIQNWADHMASVRKISTCPL 386
E S S EL C IC+ ++ + VL C HR C C+ D S + + CP
Sbjct: 7 EDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPF 66
Query: 387 CK 388
C+
Sbjct: 67 CR 68
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 492 463 0.00096 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 619 (66 KB)
Total size of DFA: 317 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.70u 0.09s 40.79t Elapsed: 00:00:03
Total cpu time: 40.70u 0.09s 40.79t Elapsed: 00:00:03
Start: Tue May 21 01:00:35 2013 End: Tue May 21 01:00:38 2013