BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011171
(492 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana
GN=At4g02110 PE=1 SV=3
Length = 1329
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 62/91 (68%), Gaps = 3/91 (3%)
Query: 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTM-SKSTTHLVCWKFEGEKHSLAKKFRTI 60
+++V ++GY G +R ++++++ G + + + THL+C+KFEGEK+ LAK+ + I
Sbjct: 110 KALVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRI 169
Query: 61 -IVNHQWVEDCIKQHRRLPERPYMLQSGQEI 90
+VNH+W+EDC+K + LPE Y + SG E+
Sbjct: 170 KLVNHRWLEDCLKNWKLLPEVDYEI-SGYEL 199
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 326 TDRIEHVNRSSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCP 385
T +++ + S + C IC F + + C H+FC+ C+Q W+ + A CP
Sbjct: 86 TSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAE------CP 139
Query: 386 LCKASFMSI 394
LCK F SI
Sbjct: 140 LCKQPFDSI 148
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 326 TDRIEHVNRSSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCP 385
T +++ + S + C IC F + + C H+FC+ C+Q W+ + A CP
Sbjct: 87 TSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAE------CP 140
Query: 386 LCKASFMSI 394
LCK F SI
Sbjct: 141 LCKQPFDSI 149
>sp|Q60596|XRCC1_MOUSE DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2
Length = 631
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI 60
++ VV +SG+ R L GA Y + +THL+C K+S
Sbjct: 320 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGR 379
Query: 61 IVNHQWVEDCIKQHRRLPERPYML 84
IV +WV DC RRLP R Y++
Sbjct: 380 IVRKEWVLDCHHMRRRLPSRRYLM 403
>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus GN=RNF166 PE=2 SV=1
Length = 244
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVE 398
+ SC IC F G+ CGH FC C+Q + + CPLC+ F KVE
Sbjct: 36 AQFSCPICLEVFHRAVGIAGCGHTFCGECLQPCLQVPSPL-----CPLCRMPF-DPKKVE 89
Query: 399 DAATSDQKIYSQTIPCAWSTRDV 421
A++ ++++ S PC ++ V
Sbjct: 90 KASSVEKQLSSYKAPCRGCSKKV 112
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1
Length = 984
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 5 VATVSGYHGTERFNLIKLISY-SGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVN 63
+ +V+G+ +R +L KL++Y +GA Y G + +S T L+C + G K+ AK++R VN
Sbjct: 625 IISVTGFVDNDRDDL-KLMAYLAGAKYTGYLCRSNTVLICREPTGLKYEKAKEWRIPCVN 683
Query: 64 HQWVEDCI 71
QW+ D +
Sbjct: 684 AQWLGDIL 691
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI-IV 62
+ A +S +R L ++++ G +++ THLV + +GEK+ A + +I IV
Sbjct: 102 ITACLSQVSPEDRSALWAMLTFHGGGCQLNLNRKCTHLVVPEPKGEKYECALRRASIKIV 161
Query: 63 NHQWVEDCIKQHRRLPERPY 82
WV DCI + R E Y
Sbjct: 162 TPDWVLDCISEKTRKDEALY 181
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
Length = 1069
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 5 VATVSGYHGTERFNLIKLISY-SGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVN 63
+ +V+G+ ++R +L KL++Y +GA Y G + +S T L+C + G K+ AK++R VN
Sbjct: 710 IISVTGFVDSDRDDL-KLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVN 768
Query: 64 HQWVEDCI 71
QW+ D +
Sbjct: 769 AQWLGDIL 776
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI-IV 62
+ A +S +R L L+++ G T++K THL+ + +GEK+ A K +I IV
Sbjct: 102 ITACLSQVSSEDRSALWALVTFYGGDCQLTLNKKCTHLIVPEPKGEKYECALKRASIKIV 161
Query: 63 NHQWVEDCIKQHRRLPERPY 82
WV DC+ + + E Y
Sbjct: 162 TPDWVLDCVSEKTKKDEAFY 181
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1
Length = 1056
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 5 VATVSGYHGTERFNLIKLISY-SGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVN 63
+ +V+G+ +R +L KL++Y +GA Y G + +S T L+C + G K+ AK++R VN
Sbjct: 697 IISVTGFVDNDRDDL-KLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVN 755
Query: 64 HQWVEDCI 71
QW+ D +
Sbjct: 756 AQWLGDIL 763
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI-IV 62
+ A +S +R L L+++ G S ++K THL+ + +GEK+ A K +I IV
Sbjct: 102 LTACLSQVSSEDRSALWALVTFHGGSCQLNLNKKCTHLIVPEPKGEKYERAVKRTSIKIV 161
Query: 63 NHQWVEDCIKQHRR 76
WV DC+ + RR
Sbjct: 162 TPDWVLDCVSEKRR 175
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C IC + S+ L C H FCY CI W +R+ TCPLCK S+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRW------IRQNPTCPLCKVPVESVV 54
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C IC + S+ L C H FCY CI W +R+ TCPLCK S+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRW------IRQNPTCPLCKVPVESVV 54
>sp|Q5XIY8|PAXI1_DANRE PAX-interacting protein 1 OS=Danio rerio GN=paxip1 PE=2 SV=1
Length = 943
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 5 VATVSGYHGTERFNLIKLISY-SGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVN 63
+ +V+G+ ++R +L KL++Y +GA Y G + +S T L+C + G K+ AK++R VN
Sbjct: 772 IISVTGFVDSDRDDL-KLMAYLAGARYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVN 830
Query: 64 HQWVEDCI 71
QW+ D +
Sbjct: 831 AQWLCDIL 838
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 299 RDFPALLQRESQDGCSGIENSNGM-VKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL 357
+DF A++Q ++++ E M + + + H+N EL C+IC +E+ L
Sbjct: 359 KDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVTL 416
Query: 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C H FC CI W RKI CP+C+ S T
Sbjct: 417 NCAHSFCSYCINEWMK-----RKIE-CPICRKDIKSKT 448
>sp|P47732|VF193_IIV6 Apoptosis inhibitor 193R OS=Invertebrate iridescent virus 6
GN=IIV6-193R PE=3 SV=2
Length = 208
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 14/77 (18%)
Query: 324 KNTDRIEHVNRSSTSGE---LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRK 380
++ D + ++++ST+ + L+C IC+T T+ ++ CGH CY C V K
Sbjct: 141 QDLDHNQDLDQNSTTSDCDVLTCKICFTN-KITKVLIPCGHSSCYEC----------VFK 189
Query: 381 ISTCPLCKASFMSITKV 397
+ TCP+CK +F+ I +
Sbjct: 190 LQTCPICKNNFIKINNL 206
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKV 397
LSC IC E ++ CGH FC SCI W +R S CP+CK F SI++V
Sbjct: 1237 LSCSICLGEVE-IGAIIKCGHYFCKSCILTW------LRAHSKCPICKG-FCSISEV 1285
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 35/183 (19%)
Query: 309 SQDGCSGIENSNGMVKNTDRIE--HVNRSSTSGELSCVICWTEF--SSTRGVLACGHRFC 364
S+D G+E + ++ ++E V S E SC IC F + C H FC
Sbjct: 74 SEDSEDGVEMATAAIETQGKLEASSVPNSDDDAE-SCPICLNAFRDQAVGTPETCAHYFC 132
Query: 365 YSCIQNWADHMASVRKISTCPLCKASFMSI-TKVEDAATSDQKI-YSQTIPCAWSTRDVF 422
CI W+ R ++CP+ + F I + + +KI T C D
Sbjct: 133 LDCIIEWS------RNANSCPVDRTVFKCICIRAQFNGKILKKIPVENTKACEAEEED-- 184
Query: 423 ILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTC 477
P+ E C RS +D L+ C C + H C+DPPL D W C
Sbjct: 185 -----------PTFCEVC--GRSDR-EDRLLLCDGCDA-GYHMECLDPPLQEVPVDEWFC 229
Query: 478 IHC 480
C
Sbjct: 230 PEC 232
>sp|P38850|RT107_YEAST Regulator of Ty1 transposition protein 107 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1
SV=1
Length = 1070
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFR----- 58
+ + Y G++RF + +L+ G +++ THL+ G+K +AKK+
Sbjct: 380 LTVAYTNYFGSQRFYIQRLVEILGGLSTPELTRKNTHLITKSTIGKKFKVAKKWSLDPQN 439
Query: 59 -TIIVNHQWVEDCIKQHRRL 77
I+ NH W+E C + +L
Sbjct: 440 AIIVTNHMWLEQCYMNNSKL 459
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
SC IC + L C H FC +CI+ W + TCPLCKA S+
Sbjct: 12 SCCICLDAITGAARALPCLHAFCLACIRRWLEGR------PTCPLCKAPVQSL 58
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 299 RDFPALLQRESQD-GCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL 357
+DF A++Q ++++ + E + + + H+N EL C+IC +E+ L
Sbjct: 360 KDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVTL 417
Query: 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C H FC CI W RKI CP+C+ S T
Sbjct: 418 NCAHSFCSYCINEWMK-----RKIE-CPICRKDIKSKT 449
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
SC IC + L C H FC +CI+ W + TCPLCKA S+
Sbjct: 12 SCCICLDAITGAARALPCLHAFCLACIRRWLEGR------PTCPLCKAPVQSL 58
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 339 GELSCVICWTEF---SSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389
GEL CV+C EF + R V C H F C+ W H STCP+C+A
Sbjct: 81 GELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHS------STCPICRA 128
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 309 SQDGCSGIENSNGMVKNTDRIEHVNRSSTSGEL-SCVICWTEF--SSTRGVLACGHRFCY 365
S+D GIE V+ ++E + ++ + SC IC F + C H FC
Sbjct: 74 SEDSEDGIEVPTAAVETQRKLEASSTPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCL 133
Query: 366 SCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILP 425
CI W+ R ++CP+ + F I A + KI + IP +TR
Sbjct: 134 DCIIEWS------RNANSCPVDRTIFKCICI---RAQFNGKILKK-IPVE-NTRACEDE- 181
Query: 426 DGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHC 480
++ P+ E C RS +D L+ C C + H C+DPPL D W C C
Sbjct: 182 --EAEEEDPTFCEVC--GRSDR-EDRLLLCDGCDA-GYHMECLDPPLQEVPVDEWFCPEC 235
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 285 GINEGSEVIKEIE--ERDFPALLQRESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELS 342
+ E +++++E+ + DF ++Q ++++ E + + + + EL
Sbjct: 317 ALQEHTQLMQELNRNKNDFEQIIQAKNKELQETKEEKEKVCAQKEEVLNHMNDVLDNELQ 376
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396
C+IC F L C H FC CI++W ++ CP+C+ +S T+
Sbjct: 377 CIICSEHFIEA-VTLNCAHSFCSYCIKSWR------KRKEECPICRQEILSETR 423
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT-KVEDAA 401
C +C E T + C H FCY CI W + CP+CK I K D
Sbjct: 41 CSVCKNEIIDTTSLSDCCHEFCYDCIVGWLTKGSG----PFCPMCKTPVSFIQRKGTDEK 96
Query: 402 TSDQKIYSQTIPCAWSTRDV 421
+ Q+I S+ P A ++ D+
Sbjct: 97 ITVQQIKSEGEPAATASEDL 116
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
Length = 1256
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 5 VATVSGYHGTERFNLIKLISY-SGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVN 63
+ +V+G+ ++R +L KL+ Y +GA Y G + +S T L+C + G K+ AK++R VN
Sbjct: 899 IISVTGFVDSDRDDL-KLMGYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVN 957
Query: 64 HQWVEDCI 71
W+ D +
Sbjct: 958 ALWLCDIL 965
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 299 RDFPALLQRESQD-GCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL 357
++F A++Q + ++ + E + + + H+N EL C+IC +E+ L
Sbjct: 361 KNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHMN-DVLENELQCIIC-SEYFVEAVTL 418
Query: 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396
C H FC CI W RK+ CP+C+ S T+
Sbjct: 419 NCAHSFCSYCINEWMK-----RKVE-CPICRKDIKSKTR 451
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
S + C IC + + +CGH FC C+Q + + CPLC+ F
Sbjct: 30 SLETQFGCPICLEVYYKPVAIGSCGHTFCGECLQPCLQVSSPL-----CPLCRMPF-DPK 83
Query: 396 KVEDAATSDQKIYSQTIPCAWSTRDVFI 423
KV+ A+ D+++ S PC ++ V +
Sbjct: 84 KVDKASNVDKQLSSYKAPCRGCSKKVTL 111
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 285 GINEGSEVIKEIE--ERDFPALLQRESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELS 342
+ E +++++E+ + DF +++ ++++ E + + + + EL
Sbjct: 322 ALQEHTQLMQELNRSKNDFEQIIEAKNKELQETKEEKEKVFAQKEEVLNHMNDVLDNELQ 381
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396
C+IC F L C H FC CI++W ++ CP+C+ ++ T+
Sbjct: 382 CIICSEHFIEA-VTLNCAHSFCSYCIKSWK------KRKEECPICRQEIVTETR 428
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 285 GINEGSEVIKEIE--ERDFPALLQRESQDGCSGIENSNGM-VKNTDRIEHVNRSSTSGEL 341
+ E +++E+ ++DF ++Q ++++ E + + + + + H+N EL
Sbjct: 346 ALQEHQALMEELNCSKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSHMN-DLLENEL 404
Query: 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS-------- 393
C+IC +E+ L C H FC CI W RK+ CP+C+ S
Sbjct: 405 QCIIC-SEYFIEAVTLNCAHSFCSFCINEWMK-----RKVE-CPICRKDIESRTNSLVLD 457
Query: 394 --ITKVEDAATSDQK 406
I+K+ D +SD K
Sbjct: 458 NCISKMVDNLSSDVK 472
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.07c PE=4 SV=1
Length = 571
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 357 LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAW 416
+ CGH F C+++W R +TCPLC+ F+ + +E + Y P
Sbjct: 54 IPCGHYFHNHCLESWC------RVANTCPLCRTEFLKVDVLEFVKGPWYRAY----PVEE 103
Query: 417 STRDVFILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMD---PPLD 473
T+ V G+ + S C+ C + ++L+ C C H YC++ P++
Sbjct: 104 KTQSVANA--GEPFEDEGSETCRCVICGRSDHAEVLLLCDGCDD-AYHTYCLNMDAVPIE 160
Query: 474 PWTCIHCKDLQMLYNRS 490
+ C +C L N +
Sbjct: 161 EFYCPNCVLLNYQENET 177
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
+ C IC ++ L C H+FC CIQ W + CPLC A SI
Sbjct: 44 MDCPICLDVAATEAQTLPCMHKFCLDCIQRW------TLTSTACPLCNARVTSI 91
>sp|Q8QN38|P28_CWPXB E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain
Brighton Red) GN=p28 PE=3 SV=1
Length = 242
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E V R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 154 IIKILDKYEEVYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211
Query: 374 HMASVRKISTCPLCKASFMSIT 395
CP+C+ F +IT
Sbjct: 212 TRRETGASDNCPICRTRFRNIT 233
>sp|Q8V571|P28_MONPV E3 ubiquitin-protein ligase p28-like OS=Monkeypox virus GN=p28 PE=3
SV=1
Length = 242
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E + R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 154 IIKILDKYEDMYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211
Query: 374 HMASVRKISTCPLCKASFMSIT 395
+ CP+C+ F IT
Sbjct: 212 TRRETGALDNCPICRTRFRKIT 233
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E V R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 151 IIKILDKYEDVYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHK 208
Query: 374 HMASVRKISTCPLCKASFMSIT 395
CP+C+ F +IT
Sbjct: 209 TRRETGASDNCPICRTRFRNIT 230
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E V R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 151 IIKILDKYEDVYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHK 208
Query: 374 HMASVRKISTCPLCKASFMSIT 395
CP+C+ F +IT
Sbjct: 209 TRRETGASDNCPICRTRFRNIT 230
>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
S + SC IC + + +CGH FC C+Q + + CPLC+ F
Sbjct: 25 SGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPL-----CPLCRLPF-DP 78
Query: 395 TKVEDAATSDQKIYSQTIPCAWSTRDV 421
KV+ A ++++ S PC + V
Sbjct: 79 KKVDKATHVEKQLSSYKAPCRGCNKKV 105
>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
S + SC IC + + +CGH FC C+Q + + CPLC+ F
Sbjct: 25 SGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPL-----CPLCRLPF-DP 78
Query: 395 TKVEDAATSDQKIYSQTIPCAWSTRDV 421
KV+ A ++++ S PC + V
Sbjct: 79 KKVDKATHVEKQLSSYKAPCRGCNKKV 105
>sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis
GN=topbp1-A PE=1 SV=2
Length = 1513
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 5 VATVSGYHGTERFNLIKLISYSGASYVGTMSK---------STTHLVCWKFEGEKHSLAK 55
V +VS + G ER +L+ L GA + ++THLV EG K+ AK
Sbjct: 638 VLSVSQFMGAERDSLVYLAGLLGAKVQEFFVRKANPKKGMFASTHLVLKDAEGSKYEAAK 697
Query: 56 KFRTIIVNHQWVEDCIKQHRRLPERPYMLQSGQE 89
K+ V W+ C + R+ E Y++ + E
Sbjct: 698 KWNLPAVTMNWLLQCARTGRKADEDSYLVDNVPE 731
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 8 VSGYHGTERFNLIKLISYSGASYVGTMS-KSTTHLVCWKFEGEKHSLAKKFRTIIVNHQW 66
V+G +R + +L + G Y G + +THL+ + +G+K+ A+K+ ++ QW
Sbjct: 206 VTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWNVHCISVQW 265
Query: 67 VEDCIKQ 73
D I++
Sbjct: 266 FFDSIEK 272
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 27 GASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI-------IVNHQWVEDCIKQHRRLPE 79
GA Y +S TH + + G ++ ++++++++ IV+ W+ C +Q +R+PE
Sbjct: 923 GAEYRWCFDESVTHFI---YHGRQNDMSREYKSVKERSGIYIVSEHWLFACSEQQKRVPE 979
Query: 80 RPY 82
Y
Sbjct: 980 ALY 982
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 343 CVICWTEFS---STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVED 399
C +C +EF S R + C H F CI W ++ S CPLC+A ++ + VE
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTW------LKSHSNCPLCRAFIVTSSAVEI 212
Query: 400 AATSDQKIYSQ 410
++Q+I ++
Sbjct: 213 VDLTNQQIVTE 223
>sp|Q85318|P28_ECTVM E3 ubiquitin-protein ligase p28 OS=Ectromelia virus (strain Moscow)
GN=p28 PE=3 SV=1
Length = 241
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E V R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 153 IIKILDKYEDVYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 210
Query: 374 HMASVRKISTCPLCKASFMSIT 395
CP+C+ F +IT
Sbjct: 211 TRRETGASDNCPICRTRFRNIT 232
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 299 RDFPALLQRESQDGCSGIENSNGM-VKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVL 357
+DF ++Q ++++ E + + + + + H+N EL C+IC +E+ L
Sbjct: 361 KDFEKIIQAKNKELERTKEEKDKVQAQKEEVLSHMN-DVLENELQCIIC-SEYFIEAVTL 418
Query: 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395
C H FC CI W RK+ CP+C+ S T
Sbjct: 419 NCAHSFCSFCISEWMK-----RKVE-CPICRKDIESRT 450
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 335 SSTSGELSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391
++ SG L C +C EF+ + R + AC H F CI W + TCPLC+A+
Sbjct: 125 AAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPW------LAAAVTCPLCRANL 178
Query: 392 MS 393
+
Sbjct: 179 TA 180
>sp|P87607|P28_CWPXG E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain GRI-90
/ Grishak) GN=p28 PE=3 SV=1
Length = 242
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 322 MVKNTDRIEHVNRSSTSGELSCVICWTEFSSTR-------GVL-ACGHRFCYSCIQNWAD 373
++K D+ E V R S E C IC+ S R G+L +C H FC +CI W
Sbjct: 154 IIKILDKYEDVYRVSKEKE--CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211
Query: 374 HMASVRKISTCPLCKASFMSIT 395
CP+C+ F +IT
Sbjct: 212 TRRETGASDNCPICRTRFRNIT 233
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 15/166 (9%)
Query: 233 SSSSAKPSTKGRRLAKCIGRNGLESMLLDSDQDRAPVIRIAETSDDGFHKDGGINEGSEV 292
S S P L + + + L+S +A VI E S+ N V
Sbjct: 976 SDSLMPPPVSNISLNNYVKDDEKKQKFLNSVIIKASVILEKEISEKQDEASQTTNVAELV 1035
Query: 293 IKEIEERDFPAL--LQRESQDGCSGIENSNGMVKN-----TDRIEHVNRSSTSGELSCVI 345
++I E + P L RE ++ S + ++ T+ EH+ + S ++ C+I
Sbjct: 1036 NQKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQI-CII 1094
Query: 346 CWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391
C + + CGH +C C++ W H S+CP+CK
Sbjct: 1095 C-RDIIKQGFITTCGHLYCSFCLEAWLKHS------SSCPMCKTKL 1133
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain
Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394
+S + + +C IC + S + C H FC+ CI+ W SV+ CPLC+ SI
Sbjct: 11 TSDASDNTCTICMSTVSDLGKTMPCLHDFCFVCIRAWTS--TSVQ----CPLCRCPVQSI 64
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM-SITKVEDAA 401
C IC +F R VL C H FC CI W + TCPLC+ + K +D A
Sbjct: 359 CPICQADFKQPR-VLVCQHIFCEECIAQWLNQE------RTCPLCRTVITDKVHKWKDGA 411
Query: 402 TSDQ-KIY 408
TS +IY
Sbjct: 412 TSAHLQIY 419
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 339 GELSCVICWTEFSSTRGVLA--CGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391
G L C +C FS+ + L CGH FC +C++ + +H K STCP C+ F
Sbjct: 635 GMLKCSVC--NFSNWKSKLIPNCGHAFCSNCMEPFYEH-----KTSTCPQCETPF 682
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKV 397
G C +C EF CGH FC+SCI W K S CPLC+A F S +K+
Sbjct: 252 GNRKCSLC-MEFIHCPAATECGHIFCWSCINGWTS------KKSECPLCRA-FSSPSKI 302
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 308 ESQDGCSGIENSNGMVKNTDRIEHVNRSSTSGELSCVICWTEFSSTRGVLACGHRFCYSC 367
E QD + + + +V N D +E V R + SC IC ++ + + CGH FC++C
Sbjct: 192 EDQDYTANFADPDTLV-NWDFVEQV-RICSHEVPSCPICLYPPTAAK-ITRCGHIFCWAC 248
Query: 368 IQNWADHMASVRKISTCPLCKASFMSITKVEDAAT-SDQKIYSQTIPCAWSTRDVFIL 424
I ++ S R S CP+C +S AT S Q + TI R+ +L
Sbjct: 249 ILHYLS--LSERTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVL 304
>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1
PE=1 SV=2
Length = 1515
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 8 VSGYHGTERFNLIKLISYSGASYVGTMSKST-THLVCWKFEGEKHSLAKKFRTIIVNHQW 66
V+G +G R + +L + G Y+G + + THL+ + +G+K+ A+++ V QW
Sbjct: 207 VTGLNGIHRKTVQQLTAKHGGQYMGQLKMNECTHLIVQEPKGQKYECARRWNVHCVTLQW 266
Query: 67 VEDCIKQ 73
D I++
Sbjct: 267 FHDSIEK 273
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 10 GYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKK--FRTIIVNHQWV 67
G+ G + L +LI+ G +++ TH++ ++ + K R +V +W+
Sbjct: 367 GFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDDVRQFWSKSSHRPHVVGAKWL 426
Query: 68 EDCIKQHRRLPERPYMLQSGQEIGPLLLEVPLFNMNSDRSNLDDNSKNEETDMRFEVSEL 127
+C + LPE Y+ + Q G + + P +++ + D S + F S L
Sbjct: 427 LECFTKGYILPEESYIHTNYQPAGIAVSDQP-----GNQTAVLDKSGS------FSKSAL 475
Query: 128 AGWKGSFLLNENLLPKFGKSENTSHKCK 155
+ +E+LL ++G ++T + K
Sbjct: 476 VPAERLQQADEDLLAQYGNDDSTMVEAK 503
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTI 60
++SVV VS ++ L + + GA Y + ++ TH + ++G + +++++
Sbjct: 907 LDSVVVCVSKKLSKKQSELNGVAASLGAEYRWSFDETVTHFI---YQGRANDSNREYKSA 963
Query: 61 ------IVNHQWVEDCIKQHRRLPERPY 82
IV+ W+ +C ++++ LPE Y
Sbjct: 964 KERGVHIVSEHWLLECAQEYKHLPESLY 991
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSK---------STTHLVCWKFEGEKH 51
+E V + S G ER +L+ L ++ GAS + ++THL+ + G K+
Sbjct: 649 LEDCVISFSQCVGAERDSLVFLANHLGASVQEFFVRKANAKKGMLASTHLIVKEPTGSKY 708
Query: 52 SLAKKFRTIIVNHQWVEDCIKQHRRLPERPYMLQSG 87
AKK+ VN W+ + + +R E +++ +
Sbjct: 709 EAAKKWSLPAVNISWLLETARIGKRADENHFLVDNA 744
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 325 NTDRIEHVNRSSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTC 384
+T +E + R EL C IC + ++S L+C H FC +CI + S++ +TC
Sbjct: 3 DTSHLERMGR-----ELKCPICLSLYNSAVS-LSCNHVFCNACI------VKSMKMDATC 50
Query: 385 PLCKASF 391
P+CK +
Sbjct: 51 PVCKIPY 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,042,961
Number of Sequences: 539616
Number of extensions: 7273068
Number of successful extensions: 21400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 565
Number of HSP's that attempted gapping in prelim test: 20989
Number of HSP's gapped (non-prelim): 863
length of query: 492
length of database: 191,569,459
effective HSP length: 122
effective length of query: 370
effective length of database: 125,736,307
effective search space: 46522433590
effective search space used: 46522433590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)