Query 011171
Match_columns 492
No_of_seqs 523 out of 3417
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12738 PTCB-BRCT: twin BRCT 99.7 1.4E-17 3E-22 130.5 4.3 63 4-66 1-63 (63)
2 KOG3226 DNA repair protein [Re 99.6 3.6E-15 7.8E-20 150.0 6.7 88 1-88 318-405 (508)
3 PF00533 BRCT: BRCA1 C Terminu 99.5 4.7E-14 1E-18 113.5 8.8 71 1-71 6-78 (78)
4 KOG0825 PHD Zn-finger protein 99.5 1.1E-14 2.4E-19 157.0 1.6 142 340-490 123-273 (1134)
5 cd00027 BRCT Breast Cancer Sup 99.4 1.3E-12 2.9E-17 101.5 7.5 70 3-72 1-72 (72)
6 smart00292 BRCT breast cancer 99.3 3.2E-12 6.9E-17 101.5 7.3 74 1-74 3-80 (80)
7 PF15227 zf-C3HC4_4: zinc fing 99.0 1.5E-10 3.2E-15 83.7 2.8 42 343-387 1-42 (42)
8 PF13639 zf-RING_2: Ring finge 98.8 1.4E-09 3.1E-14 79.1 2.7 41 342-388 2-44 (44)
9 PLN03122 Poly [ADP-ribose] pol 98.8 7.2E-09 1.6E-13 117.0 8.4 86 1-87 190-280 (815)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.7E-09 5.8E-14 75.7 2.5 39 343-387 1-39 (39)
11 PLN03208 E3 ubiquitin-protein 98.8 5.6E-09 1.2E-13 98.8 4.6 56 337-393 15-80 (193)
12 PLN03123 poly [ADP-ribose] pol 98.8 1E-08 2.2E-13 118.0 7.2 86 1-86 394-482 (981)
13 PF13920 zf-C3HC4_3: Zinc fing 98.7 9.4E-09 2E-13 76.9 3.4 48 339-393 1-49 (50)
14 KOG1929 Nucleotide excision re 98.7 1.8E-08 3.8E-13 113.3 6.1 86 1-86 104-190 (811)
15 smart00504 Ubox Modified RING 98.6 2.7E-08 5.9E-13 77.4 4.2 47 340-393 1-47 (63)
16 PHA02929 N1R/p28-like protein; 98.6 1.8E-08 3.9E-13 98.9 3.7 53 338-396 172-231 (238)
17 PF00097 zf-C3HC4: Zinc finger 98.6 2.1E-08 4.5E-13 71.6 3.1 41 343-387 1-41 (41)
18 PHA02926 zinc finger-like prot 98.6 3.8E-08 8.2E-13 94.2 3.8 58 338-395 168-233 (242)
19 KOG0823 Predicted E3 ubiquitin 98.6 3.2E-08 7E-13 95.3 3.3 54 338-395 45-98 (230)
20 KOG0317 Predicted E3 ubiquitin 98.6 3.1E-08 6.6E-13 98.1 3.1 50 338-394 237-286 (293)
21 cd00162 RING RING-finger (Real 98.5 7.3E-08 1.6E-12 68.8 3.6 44 342-390 1-44 (45)
22 TIGR00599 rad18 DNA repair pro 98.5 6.1E-08 1.3E-12 101.6 3.8 53 334-393 20-72 (397)
23 PF12678 zf-rbx1: RING-H2 zinc 98.4 1.3E-07 2.9E-12 76.5 3.2 42 341-388 20-73 (73)
24 KOG1929 Nucleotide excision re 98.4 2.7E-07 5.9E-12 103.9 6.3 85 1-85 494-578 (811)
25 KOG0320 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 87.6 2.9 50 338-393 129-179 (187)
26 PF13445 zf-RING_UBOX: RING-ty 98.4 1.8E-07 3.9E-12 67.9 2.9 39 343-385 1-43 (43)
27 KOG4628 Predicted E3 ubiquitin 98.3 2.3E-07 5.1E-12 95.2 2.5 51 341-396 230-282 (348)
28 smart00184 RING Ring finger. E 98.3 6.6E-07 1.4E-11 61.5 3.6 39 343-387 1-39 (39)
29 PF14634 zf-RING_5: zinc-RING 98.3 5E-07 1.1E-11 65.8 2.5 42 342-389 1-44 (44)
30 KOG0287 Postreplication repair 98.3 2.4E-07 5.1E-12 93.2 0.9 51 336-393 19-69 (442)
31 PF04564 U-box: U-box domain; 98.2 9.6E-07 2.1E-11 71.4 3.2 50 339-394 3-52 (73)
32 COG5432 RAD18 RING-finger-cont 98.2 8.5E-07 1.9E-11 87.6 2.6 51 336-393 21-71 (391)
33 PRK14350 ligA NAD-dependent DN 98.1 4.4E-06 9.6E-11 93.5 7.7 70 1-70 594-664 (669)
34 KOG4367 Predicted Zn-finger pr 98.1 8.7E-07 1.9E-11 91.6 1.0 36 338-374 2-37 (699)
35 PF12861 zf-Apc11: Anaphase-pr 98.1 3.3E-06 7.1E-11 69.8 3.4 52 339-393 20-83 (85)
36 KOG2177 Predicted E3 ubiquitin 98.0 1.4E-06 3.1E-11 85.7 1.2 48 335-389 8-55 (386)
37 COG5540 RING-finger-containing 98.0 2.7E-06 5.8E-11 84.7 3.0 49 340-393 323-373 (374)
38 KOG2164 Predicted E3 ubiquitin 98.0 2.7E-06 5.9E-11 90.2 3.0 52 340-393 186-237 (513)
39 KOG3524 Predicted guanine nucl 98.0 1.9E-06 4E-11 93.8 1.7 74 1-76 119-192 (850)
40 COG5243 HRD1 HRD ubiquitin lig 98.0 3.3E-06 7.2E-11 86.0 3.2 50 338-393 285-346 (491)
41 PRK07956 ligA NAD-dependent DN 98.0 1.5E-05 3.2E-10 89.6 8.5 73 1-73 591-664 (665)
42 PRK06195 DNA polymerase III su 98.0 1.8E-05 4E-10 81.1 7.8 69 1-69 221-304 (309)
43 COG0272 Lig NAD-dependent DNA 98.0 1.6E-05 3.5E-10 87.6 7.5 69 1-69 595-664 (667)
44 PRK06063 DNA polymerase III su 97.9 2.1E-05 4.7E-10 80.8 7.6 71 1-71 233-305 (313)
45 PRK14351 ligA NAD-dependent DN 97.9 2.6E-05 5.7E-10 87.7 8.6 73 1-73 610-684 (689)
46 COG5574 PEX10 RING-finger-cont 97.9 5.6E-06 1.2E-10 81.3 2.6 50 338-393 213-263 (271)
47 TIGR00575 dnlj DNA ligase, NAD 97.9 2.2E-05 4.7E-10 88.1 7.6 66 1-66 585-651 (652)
48 KOG0804 Cytoplasmic Zn-finger 97.8 3.7E-06 7.9E-11 87.7 0.0 47 335-389 170-219 (493)
49 KOG0311 Predicted E3 ubiquitin 97.8 3.9E-06 8.5E-11 85.3 -0.9 58 336-398 39-96 (381)
50 PF14835 zf-RING_6: zf-RING of 97.7 7.1E-06 1.5E-10 64.1 0.2 46 338-391 5-50 (65)
51 KOG0323 TFIIF-interacting CTD 97.7 1.2E-05 2.7E-10 88.5 2.1 86 1-86 442-532 (635)
52 KOG0802 E3 ubiquitin ligase [P 97.7 1.3E-05 2.9E-10 88.2 2.3 46 339-391 290-340 (543)
53 TIGR00570 cdk7 CDK-activating 97.7 2.2E-05 4.7E-10 79.7 3.6 50 340-394 3-56 (309)
54 KOG0966 ATP-dependent DNA liga 97.7 6.8E-05 1.5E-09 83.2 7.4 84 1-84 634-721 (881)
55 KOG3548 DNA damage checkpoint 97.6 4.8E-05 1E-09 85.3 4.2 88 1-89 926-1040(1176)
56 KOG0978 E3 ubiquitin ligase in 97.5 2.5E-05 5.4E-10 86.6 1.0 52 336-393 639-690 (698)
57 KOG2879 Predicted E3 ubiquitin 97.4 9E-05 1.9E-09 73.3 3.4 55 337-395 236-290 (298)
58 KOG2043 Signaling protein SWIF 97.4 0.00018 3.8E-09 82.8 5.1 78 5-85 661-739 (896)
59 KOG2660 Locus-specific chromos 97.4 5.5E-05 1.2E-09 76.6 0.9 54 336-395 11-64 (331)
60 KOG4362 Transcriptional regula 97.3 0.0003 6.6E-09 77.8 5.7 81 4-87 479-565 (684)
61 KOG0824 Predicted E3 ubiquitin 97.3 9.5E-05 2.1E-09 74.0 1.6 48 340-393 7-54 (324)
62 KOG1244 Predicted transcriptio 97.2 0.00014 3.1E-09 71.6 1.5 46 438-484 282-332 (336)
63 PF11789 zf-Nse: Zinc-finger o 97.2 0.0002 4.3E-09 55.3 1.8 44 339-386 10-53 (57)
64 KOG4159 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 75.2 2.4 51 337-394 81-131 (398)
65 COG5152 Uncharacterized conser 97.0 0.00022 4.8E-09 67.3 0.8 47 340-393 196-242 (259)
66 COG5275 BRCT domain type II [G 97.0 0.0018 3.9E-08 62.2 6.4 68 1-68 157-226 (276)
67 PF11793 FANCL_C: FANCL C-term 96.9 0.00048 1E-08 55.3 2.0 55 340-394 2-68 (70)
68 COG5163 NOP7 Protein required 96.9 0.0012 2.7E-08 68.3 4.8 77 1-84 351-439 (591)
69 PF00628 PHD: PHD-finger; Int 96.8 0.00051 1.1E-08 51.2 1.5 43 439-482 1-50 (51)
70 KOG4443 Putative transcription 96.7 0.001 2.3E-08 72.7 3.5 94 338-483 16-118 (694)
71 smart00744 RINGv The RING-vari 96.7 0.0015 3.3E-08 48.8 3.3 42 342-388 1-49 (49)
72 KOG0297 TNF receptor-associate 96.7 0.00076 1.7E-08 71.5 2.3 56 337-398 18-73 (391)
73 KOG2481 Protein required for n 96.7 0.0011 2.4E-08 70.7 3.3 77 1-84 328-415 (570)
74 KOG4265 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 68.0 3.0 48 340-394 290-338 (349)
75 COG5194 APC11 Component of SCF 96.7 0.0014 3E-08 53.3 2.9 30 358-393 53-82 (88)
76 KOG1493 Anaphase-promoting com 96.6 0.00052 1.1E-08 55.3 -0.3 50 340-393 20-82 (84)
77 COG5219 Uncharacterized conser 96.4 0.0013 2.9E-08 74.1 1.9 53 337-393 1466-1524(1525)
78 KOG1734 Predicted RING-contain 96.4 0.00085 1.8E-08 66.2 0.3 53 339-395 223-284 (328)
79 KOG1039 Predicted E3 ubiquitin 96.4 0.0024 5.1E-08 66.3 3.0 60 335-394 156-223 (344)
80 KOG4172 Predicted E3 ubiquitin 96.4 0.00094 2E-08 50.4 0.1 47 341-393 8-55 (62)
81 KOG0828 Predicted E3 ubiquitin 96.1 0.0024 5.2E-08 67.8 1.6 49 340-393 571-635 (636)
82 KOG1813 Predicted E3 ubiquitin 96.1 0.0019 4E-08 64.8 0.6 47 341-394 242-288 (313)
83 KOG0825 PHD Zn-finger protein 95.9 0.0052 1.1E-07 68.4 2.8 78 340-417 96-179 (1134)
84 KOG1512 PHD Zn-finger protein 95.8 0.0041 8.8E-08 61.9 1.6 40 438-478 315-357 (381)
85 KOG1785 Tyrosine kinase negati 95.7 0.0043 9.4E-08 64.3 1.5 51 341-396 370-420 (563)
86 KOG1645 RING-finger-containing 95.7 0.0063 1.4E-07 63.4 2.5 49 340-392 4-56 (463)
87 KOG2930 SCF ubiquitin ligase, 95.7 0.0067 1.5E-07 51.7 2.2 27 358-390 80-106 (114)
88 KOG4692 Predicted E3 ubiquitin 95.6 0.0072 1.6E-07 61.8 2.6 52 335-393 417-468 (489)
89 COG5222 Uncharacterized conser 95.3 0.0091 2E-07 59.9 2.2 44 341-389 275-318 (427)
90 KOG0827 Predicted E3 ubiquitin 95.3 0.0086 1.9E-07 62.0 1.8 45 341-388 5-52 (465)
91 KOG1814 Predicted E3 ubiquitin 95.3 0.0093 2E-07 62.3 2.0 52 339-390 183-238 (445)
92 KOG1428 Inhibitor of type V ad 95.2 0.011 2.4E-07 69.3 2.6 57 338-394 3484-3546(3738)
93 smart00249 PHD PHD zinc finger 95.0 0.015 3.3E-07 41.4 2.1 40 440-480 2-47 (47)
94 KOG1002 Nucleotide excision re 95.0 0.011 2.5E-07 63.2 1.6 54 338-393 534-587 (791)
95 KOG1812 Predicted E3 ubiquitin 94.9 0.017 3.6E-07 61.2 2.8 54 340-393 146-204 (384)
96 KOG3524 Predicted guanine nucl 94.8 0.022 4.7E-07 63.0 3.3 86 1-87 211-296 (850)
97 KOG1941 Acetylcholine receptor 94.2 0.018 4E-07 59.7 1.0 51 338-392 363-416 (518)
98 KOG4275 Predicted E3 ubiquitin 94.2 0.0081 1.7E-07 60.1 -1.5 44 339-393 299-343 (350)
99 PF14447 Prok-RING_4: Prokaryo 94.0 0.023 5.1E-07 43.2 1.1 46 339-393 6-51 (55)
100 KOG4185 Predicted E3 ubiquitin 93.4 0.046 9.9E-07 55.6 2.2 46 340-391 3-54 (296)
101 PF04641 Rtf2: Rtf2 RING-finge 93.3 0.064 1.4E-06 53.8 3.2 51 337-394 110-163 (260)
102 KOG2093 Translesion DNA polyme 92.9 0.023 5E-07 64.3 -0.8 146 1-164 162-339 (1016)
103 PF14570 zf-RING_4: RING/Ubox 92.7 0.064 1.4E-06 39.9 1.5 44 343-391 1-47 (48)
104 PRK05601 DNA polymerase III su 92.7 0.22 4.7E-06 52.4 6.0 71 2-72 296-368 (377)
105 KOG3039 Uncharacterized conser 92.6 0.089 1.9E-06 51.7 2.8 50 339-394 220-272 (303)
106 KOG1571 Predicted E3 ubiquitin 92.2 0.07 1.5E-06 55.2 1.7 47 338-394 303-349 (355)
107 KOG4739 Uncharacterized protei 92.0 0.055 1.2E-06 53.1 0.6 50 341-398 4-54 (233)
108 PF05290 Baculo_IE-1: Baculovi 91.9 0.13 2.9E-06 46.0 2.9 54 339-395 79-135 (140)
109 KOG1815 Predicted E3 ubiquitin 91.8 0.21 4.6E-06 53.9 4.9 57 338-394 68-128 (444)
110 PF02891 zf-MIZ: MIZ/SP-RING z 91.8 0.082 1.8E-06 39.6 1.2 48 341-390 3-50 (50)
111 KOG0955 PHD finger protein BR1 91.5 0.085 1.8E-06 61.9 1.6 46 435-481 217-267 (1051)
112 KOG0954 PHD finger protein [Ge 91.3 0.074 1.6E-06 59.3 0.8 46 435-481 269-319 (893)
113 KOG2114 Vacuolar assembly/sort 90.8 0.1 2.2E-06 59.2 1.2 48 340-396 840-887 (933)
114 KOG4299 PHD Zn-finger protein 90.6 0.1 2.3E-06 57.3 1.1 45 438-483 254-305 (613)
115 PF07800 DUF1644: Protein of u 90.5 0.3 6.4E-06 45.2 3.7 57 339-396 1-95 (162)
116 KOG0957 PHD finger protein [Ge 90.5 0.13 2.8E-06 55.1 1.6 44 437-481 544-596 (707)
117 KOG1973 Chromatin remodeling p 90.2 0.16 3.5E-06 51.4 2.0 34 450-483 230-268 (274)
118 KOG4445 Uncharacterized conser 90.2 0.1 2.2E-06 52.6 0.5 55 339-393 114-187 (368)
119 KOG0826 Predicted E3 ubiquitin 90.1 0.3 6.6E-06 49.9 3.8 48 338-391 298-345 (357)
120 KOG1001 Helicase-like transcri 90.0 0.12 2.7E-06 58.4 1.1 48 341-394 455-502 (674)
121 PF10367 Vps39_2: Vacuolar sor 89.7 0.12 2.6E-06 44.0 0.5 33 337-369 75-108 (109)
122 COG5141 PHD zinc finger-contai 89.0 0.16 3.5E-06 54.3 0.9 54 437-491 193-256 (669)
123 COG5236 Uncharacterized conser 88.8 0.38 8.3E-06 49.5 3.4 54 335-393 56-109 (493)
124 PHA02825 LAP/PHD finger-like p 88.5 0.46 9.9E-06 44.0 3.4 53 338-396 6-63 (162)
125 KOG3161 Predicted E3 ubiquitin 88.1 0.17 3.6E-06 55.8 0.4 38 336-374 7-48 (861)
126 PHA03096 p28-like protein; Pro 87.9 0.28 6.1E-06 49.9 1.9 49 341-389 179-234 (284)
127 PHA02862 5L protein; Provision 87.7 0.47 1E-05 43.2 2.9 50 341-396 3-57 (156)
128 KOG3800 Predicted E3 ubiquitin 87.2 0.44 9.6E-06 48.1 2.7 46 342-392 2-51 (300)
129 KOG0956 PHD finger protein AF1 87.1 0.29 6.3E-06 54.4 1.4 44 438-482 6-56 (900)
130 KOG2932 E3 ubiquitin ligase in 86.9 0.24 5.1E-06 50.3 0.6 49 340-396 90-138 (389)
131 KOG2034 Vacuolar sorting prote 86.8 0.35 7.5E-06 55.3 1.9 38 337-374 814-852 (911)
132 COG5034 TNG2 Chromatin remodel 86.5 0.34 7.4E-06 47.9 1.5 42 441-483 224-270 (271)
133 KOG1245 Chromatin remodeling c 86.1 0.22 4.7E-06 60.6 -0.2 47 437-484 1108-1159(1404)
134 KOG1952 Transcription factor N 85.8 0.6 1.3E-05 53.2 3.1 56 337-392 188-247 (950)
135 KOG4323 Polycomb-like PHD Zn-f 85.6 0.37 8E-06 51.8 1.3 128 338-483 81-224 (464)
136 KOG3268 Predicted E3 ubiquitin 84.1 0.87 1.9E-05 42.9 2.8 57 339-395 164-231 (234)
137 PF12906 RINGv: RING-variant d 84.0 0.75 1.6E-05 33.9 2.0 41 343-387 1-47 (47)
138 KOG2817 Predicted E3 ubiquitin 83.5 0.87 1.9E-05 47.8 2.9 51 337-390 331-383 (394)
139 KOG3970 Predicted E3 ubiquitin 83.3 0.96 2.1E-05 44.1 2.9 54 340-393 50-106 (299)
140 KOG2093 Translesion DNA polyme 83.1 0.87 1.9E-05 52.1 2.9 85 1-88 48-134 (1016)
141 KOG3002 Zn finger protein [Gen 82.9 0.76 1.7E-05 47.1 2.2 48 336-394 44-93 (299)
142 COG5220 TFB3 Cdk activating ki 82.7 0.48 1E-05 46.5 0.6 49 339-392 9-64 (314)
143 PF08746 zf-RING-like: RING-li 82.5 1.3 2.7E-05 32.2 2.6 41 343-387 1-43 (43)
144 KOG0298 DEAD box-containing he 82.2 0.49 1.1E-05 56.1 0.5 46 338-389 1151-1196(1394)
145 COG5175 MOT2 Transcriptional r 81.7 0.99 2.1E-05 46.4 2.4 47 341-392 15-64 (480)
146 KOG1940 Zn-finger protein [Gen 80.6 0.89 1.9E-05 46.0 1.7 44 340-389 158-204 (276)
147 PF03854 zf-P11: P-11 zinc fin 80.5 0.82 1.8E-05 33.8 1.0 44 341-393 3-47 (50)
148 PF05883 Baculo_RING: Baculovi 79.8 0.82 1.8E-05 41.3 1.0 35 340-374 26-68 (134)
149 KOG0966 ATP-dependent DNA liga 78.8 3.4 7.4E-05 47.1 5.6 75 9-83 795-881 (881)
150 KOG4362 Transcriptional regula 78.3 0.58 1.3E-05 52.5 -0.5 52 338-393 19-70 (684)
151 PF10272 Tmpp129: Putative tra 74.8 2.1 4.6E-05 44.9 2.5 35 359-393 311-352 (358)
152 KOG3579 Predicted E3 ubiquitin 74.7 1.7 3.7E-05 43.8 1.7 45 339-385 267-315 (352)
153 KOG0956 PHD finger protein AF1 69.0 2.7 5.9E-05 47.0 1.8 105 355-468 42-154 (900)
154 KOG2807 RNA polymerase II tran 68.7 3.7 8E-05 42.2 2.5 41 437-481 330-374 (378)
155 PF13831 PHD_2: PHD-finger; PD 67.9 1.1 2.4E-05 31.2 -0.9 31 450-481 2-36 (36)
156 KOG1701 Focal adhesion adaptor 64.3 2.3 5.1E-05 45.1 0.2 36 339-374 301-336 (468)
157 KOG3548 DNA damage checkpoint 64.3 10 0.00022 44.1 5.1 64 15-78 1084-1159(1176)
158 PF05605 zf-Di19: Drought indu 64.1 3.3 7E-05 31.2 0.9 40 339-390 1-40 (54)
159 KOG1100 Predicted E3 ubiquitin 64.0 3.8 8.1E-05 39.9 1.5 40 343-393 161-201 (207)
160 PF07191 zinc-ribbons_6: zinc- 60.0 0.87 1.9E-05 36.6 -3.0 43 340-394 1-43 (70)
161 KOG3039 Uncharacterized conser 59.3 7.6 0.00016 38.6 2.7 38 335-373 38-75 (303)
162 KOG0383 Predicted helicase [Ge 57.6 3.3 7.2E-05 47.1 -0.1 42 436-481 46-92 (696)
163 KOG0309 Conserved WD40 repeat- 54.5 8.3 0.00018 43.8 2.3 43 341-389 1029-1073(1081)
164 KOG3899 Uncharacterized conser 53.5 8.6 0.00019 39.1 2.0 35 359-393 325-366 (381)
165 COG5109 Uncharacterized conser 51.0 11 0.00023 38.8 2.3 51 336-389 332-384 (396)
166 COG5183 SSM4 Protein involved 50.1 14 0.0003 42.5 3.1 53 339-396 11-70 (1175)
167 KOG3113 Uncharacterized conser 47.9 16 0.00034 36.6 2.8 48 339-394 110-160 (293)
168 PF14569 zf-UDP: Zinc-binding 47.0 21 0.00046 29.3 3.0 49 340-394 9-64 (80)
169 PF14446 Prok-RING_1: Prokaryo 45.8 11 0.00024 28.8 1.2 31 438-469 6-37 (54)
170 COG5067 DBF4 Protein kinase es 42.5 16 0.00035 38.6 2.1 59 3-61 125-191 (468)
171 KOG0827 Predicted E3 ubiquitin 42.0 3.4 7.3E-05 43.5 -2.9 50 341-396 197-249 (465)
172 KOG0801 Predicted E3 ubiquitin 41.8 9.6 0.00021 35.5 0.3 30 336-365 173-204 (205)
173 KOG0957 PHD finger protein [Ge 41.5 20 0.00044 39.0 2.7 57 435-492 117-192 (707)
174 PF06906 DUF1272: Protein of u 40.0 20 0.00044 27.6 1.7 47 341-395 6-55 (57)
175 KOG4718 Non-SMC (structural ma 39.9 14 0.0003 35.9 1.1 45 340-390 181-225 (235)
176 PF14446 Prok-RING_1: Prokaryo 39.5 25 0.00054 26.9 2.2 30 340-369 5-37 (54)
177 KOG3053 Uncharacterized conser 38.7 22 0.00047 35.7 2.2 57 337-393 17-83 (293)
178 PF14605 Nup35_RRM_2: Nup53/35 37.4 73 0.0016 23.9 4.5 39 5-43 3-41 (53)
179 KOG1244 Predicted transcriptio 37.4 11 0.00024 38.0 -0.0 20 239-258 111-130 (336)
180 PF10235 Cript: Microtubule-as 36.5 19 0.00041 30.4 1.3 37 340-392 44-80 (90)
181 COG3813 Uncharacterized protei 33.4 25 0.00055 28.4 1.4 47 342-396 7-56 (84)
182 KOG1812 Predicted E3 ubiquitin 31.5 22 0.00048 37.9 1.1 34 340-374 306-344 (384)
183 PF10497 zf-4CXXC_R1: Zinc-fin 31.1 54 0.0012 28.4 3.2 31 360-390 37-70 (105)
184 PF12773 DZR: Double zinc ribb 30.2 48 0.001 24.1 2.4 23 438-460 13-37 (50)
185 COG4306 Uncharacterized protei 28.5 48 0.001 29.8 2.5 24 361-393 28-51 (160)
186 TIGR00622 ssl1 transcription f 27.6 51 0.0011 29.1 2.4 42 341-388 56-110 (112)
187 KOG2169 Zn-finger transcriptio 27.2 39 0.00085 38.4 2.2 58 335-394 301-358 (636)
188 PF14353 CpXC: CpXC protein 27.2 49 0.0011 29.2 2.4 53 340-396 1-53 (128)
189 COG5574 PEX10 RING-finger-cont 27.1 99 0.0021 31.2 4.7 39 335-373 90-132 (271)
190 cd00350 rubredoxin_like Rubred 26.5 43 0.00094 22.6 1.5 27 454-486 3-29 (33)
191 PF06844 DUF1244: Protein of u 26.3 40 0.00086 26.9 1.4 14 362-375 11-24 (68)
192 COG5242 TFB4 RNA polymerase II 26.2 32 0.0007 33.9 1.1 14 340-353 260-273 (296)
193 KOG1512 PHD Zn-finger protein 26.1 24 0.00053 35.8 0.3 18 451-469 278-295 (381)
194 PF07649 C1_3: C1-like domain; 25.8 24 0.00052 23.2 0.1 28 439-467 2-29 (30)
195 PF13922 PHD_3: PHD domain of 25.2 20 0.00043 28.5 -0.4 21 450-471 41-61 (69)
196 PF07975 C1_4: TFIIH C1-like d 25.0 44 0.00095 25.3 1.4 25 358-388 26-50 (51)
197 KOG0824 Predicted E3 ubiquitin 24.7 30 0.00066 35.5 0.6 52 336-393 101-152 (324)
198 PF10571 UPF0547: Uncharacteri 24.6 20 0.00044 23.1 -0.4 11 381-391 14-24 (26)
199 PF10083 DUF2321: Uncharacteri 24.5 66 0.0014 29.9 2.7 26 360-394 27-52 (158)
200 KOG4185 Predicted E3 ubiquitin 23.8 18 0.00039 36.6 -1.2 45 340-390 207-265 (296)
201 PF10497 zf-4CXXC_R1: Zinc-fin 23.8 49 0.0011 28.6 1.7 41 438-483 8-70 (105)
202 COG0068 HypF Hydrogenase matur 21.5 45 0.00097 38.1 1.2 56 339-394 100-186 (750)
203 PF10146 zf-C4H2: Zinc finger- 21.0 57 0.0012 32.3 1.7 26 363-394 196-221 (230)
204 PF04216 FdhE: Protein involve 20.6 17 0.00037 36.9 -2.1 45 340-390 172-220 (290)
No 1
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.69 E-value=1.4e-17 Score=130.50 Aligned_cols=63 Identities=41% Similarity=0.644 Sum_probs=56.4
Q ss_pred cEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEecccc
Q 011171 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQW 66 (492)
Q Consensus 4 ~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~W 66 (492)
|+||+|||.+.++..|.++|++|||+|+++|++++|||||..+.+.||++|.+|||+||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999
No 2
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.56 E-value=3.6e-15 Score=149.97 Aligned_cols=88 Identities=30% Similarity=0.505 Sum_probs=85.6
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|+|||+++|||.+.+|..|...+..|||+|..+++..+|||||+.++++||.+..-.|..||+..||.+|+++.++||..
T Consensus 318 L~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~lp~r 397 (508)
T KOG3226|consen 318 LEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKKLLPIR 397 (508)
T ss_pred hhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHhhccHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCC
Q 011171 81 PYMLQSGQ 88 (492)
Q Consensus 81 ~Y~l~s~~ 88 (492)
.|+|..+.
T Consensus 398 rYlm~~~~ 405 (508)
T KOG3226|consen 398 RYLMHAGK 405 (508)
T ss_pred HHHhcCCC
Confidence 99997764
No 3
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.52 E-value=4.7e-14 Score=113.52 Aligned_cols=71 Identities=32% Similarity=0.476 Sum_probs=68.9
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC--CChhHHHHHhcCCeEeccccHHHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF--EGEKHSLAKKFRTIIVNHQWVEDCI 71 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~--~~~K~~~A~~~~i~IVs~~WL~dc~ 71 (492)
|+|+.|+++++...++..|..+|..+||++...+++.+||||+... .+.|+..|..++++||+++||.||+
T Consensus 6 F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 6 FEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 7999999999999999999999999999999999999999999987 8999999999999999999999996
No 4
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.46 E-value=1.1e-14 Score=157.01 Aligned_cols=142 Identities=24% Similarity=0.541 Sum_probs=101.3
Q ss_pred cccccccccccccccE--eecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccccccC
Q 011171 340 ELSCVICWTEFSSTRG--VLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWS 417 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~--~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~~~~s 417 (492)
.-.||+|+.-+.+..+ ..+|+|.||..||..|-+. ..+||+||..|..+........ ..+|. .+|...+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~------aqTCPiDR~EF~~v~V~eS~~~--~~~vR-~lP~EEs 193 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC------AQTCPVDRGEFGEVKVLESTGI--EANVR-CLPSEES 193 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh------cccCchhhhhhheeeeeccccc--cceeE-ecchhhh
Confidence 4589999998886522 3579999999999999998 7899999999987644332111 11121 1222333
Q ss_pred CCcccccCCCCC--CCCCCcccccccccCccCCcccccccccCCCCccccccCCC-----CCCCCCCccchhhhcccccc
Q 011171 418 TRDVFILPDGDS--ASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDP-----PLDPWTCIHCKDLQMLYNRS 490 (492)
Q Consensus 418 ~~~~~~~~~~~~--~~~~~~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~-----pl~~w~C~~C~e~~~~yCr~ 490 (492)
+..+....++.. ..........|.+|...+.|+++++|+.|....||.||++| |+.+|||..|..+..+|.++
T Consensus 194 ~~~~e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~~eh~~ 273 (1134)
T KOG0825|consen 194 ENILEKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEITEHKD 273 (1134)
T ss_pred hhhhhhccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhhhhhhhH
Confidence 332333333221 12233556889999999999999999999986699999998 56789999999988777653
No 5
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.38 E-value=1.3e-12 Score=101.45 Aligned_cols=70 Identities=31% Similarity=0.427 Sum_probs=65.3
Q ss_pred CcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChh-HHHHHhcCCeEeccccHHHHHh
Q 011171 3 SVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEK-HSLAKKFRTIIVNHQWVEDCIK 72 (492)
Q Consensus 3 g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K-~~~A~~~~i~IVs~~WL~dc~~ 72 (492)
|+.|+++|+. +.++..|.++|..+||++...++..+||||+......+ +..|..++++||+++||.||++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 6899999987 89999999999999999999999999999999877766 8999999999999999999974
No 6
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.33 E-value=3.2e-12 Score=101.52 Aligned_cols=74 Identities=31% Similarity=0.481 Sum_probs=67.7
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCC-CCcEEEecCCCChh--HHHHHhcCCeEeccccHHHHHhhc
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSK-STTHLVCWKFEGEK--HSLAKKFRTIIVNHQWVEDCIKQH 74 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~-~vTHLV~~~~~~~K--~~~A~~~~i~IVs~~WL~dc~~~~ 74 (492)
|+|++|+++| +....+..+..+|..+||++...++. ++||+|+......+ +..|...+++||+++||.+|++.+
T Consensus 3 f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 3 FKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred cCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 7899999999 88999999999999999999999998 99999999866655 577888899999999999999864
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.02 E-value=1.5e-10 Score=83.69 Aligned_cols=42 Identities=36% Similarity=0.832 Sum_probs=32.1
Q ss_pred ccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
||||+++|.+| ++|+|||+||..||..|+.... +....||+|
T Consensus 1 CpiC~~~~~~P-v~l~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP-VSLPCGHSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE-EE-SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCccchhhCCc-cccCCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 89999999999 8999999999999999998742 222689988
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.85 E-value=1.4e-09 Score=79.07 Aligned_cols=41 Identities=41% Similarity=1.039 Sum_probs=35.5
Q ss_pred cccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 342 SCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 342 ~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
.|+||++.|. +.++.++|||.||..||.+|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH------SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh------CCcCCccC
Confidence 6999999996 34578899999999999999998 56999996
No 9
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.82 E-value=7.2e-09 Score=117.00 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCC-----ChhHHHHHhcCCeEeccccHHHHHhhcC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFE-----GEKHSLAKKFRTIIVNHQWVEDCIKQHR 75 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~-----~~K~~~A~~~~i~IVs~~WL~dc~~~~~ 75 (492)
|.|.+|+|||-.+..|.+++.+|+.+||+|+..+ ..+||||++... +.|+++|.++||+||+.+||.+|+..++
T Consensus 190 L~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~~~k 268 (815)
T PLN03122 190 FSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSIEKQE 268 (815)
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHHhcCC
Confidence 6899999999666699999999999999999999 667799987633 4899999999999999999999999999
Q ss_pred CCCCCCcccCCC
Q 011171 76 RLPERPYMLQSG 87 (492)
Q Consensus 76 ~l~e~~Y~l~s~ 87 (492)
.+++..|.+.+.
T Consensus 269 ~~~~~~y~l~~~ 280 (815)
T PLN03122 269 AQPLEAYDVVSD 280 (815)
T ss_pred cccchhhhhccc
Confidence 999999998533
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.80 E-value=2.7e-09 Score=75.74 Aligned_cols=39 Identities=38% Similarity=1.045 Sum_probs=34.2
Q ss_pred ccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
|+||++.+.+|++.++|||.||..||.+|++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC------cCCCcCC
Confidence 89999999999678999999999999999998 5799987
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.77 E-value=5.6e-09 Score=98.76 Aligned_cols=56 Identities=32% Similarity=0.884 Sum_probs=45.3
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhcc----------CCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMAS----------VRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~----------~~~~~~CP~Cr~~~~~ 393 (492)
..+++.|+||++.+.+| ++++|||.||..||..|+..... .+....||+||..+..
T Consensus 15 ~~~~~~CpICld~~~dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34578999999999999 78999999999999999864210 1235689999998875
No 12
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.76 E-value=1e-08 Score=117.97 Aligned_cols=86 Identities=22% Similarity=0.372 Sum_probs=78.8
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC---CCChhHHHHHhcCCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK---FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~---~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l 77 (492)
|.|++|+++|-.+....+++++|+.+||+|+..++..+||||+.. ..+.|+++|++.+||||+.+||.||+....++
T Consensus 394 l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~~~~ 473 (981)
T PLN03123 394 LGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKKKKL 473 (981)
T ss_pred cCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhccccC
Confidence 689999999966777799999999999999999999999999984 45688999999999999999999999999999
Q ss_pred CCCCcccCC
Q 011171 78 PERPYMLQS 86 (492)
Q Consensus 78 ~e~~Y~l~s 86 (492)
|+..|.+.+
T Consensus 474 p~~~y~~~~ 482 (981)
T PLN03123 474 PFDKYKLEA 482 (981)
T ss_pred cchhhhhcc
Confidence 999998754
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=9.4e-09 Score=76.88 Aligned_cols=48 Identities=29% Similarity=0.789 Sum_probs=40.9
Q ss_pred CcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++..|+||++...++ +.+||||. ||..|+..|+.. ...||+||+++..
T Consensus 1 ~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRDV-VLLPCGHLCFCEECAERLLKR------KKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSSE-EEETTCEEEEEHHHHHHHHHT------TSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCce-EEeCCCChHHHHHHhHHhccc------CCCCCcCChhhcC
Confidence 357899999999987 88999999 999999999996 7899999998754
No 14
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.69 E-value=1.8e-08 Score=113.25 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=80.6
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC-hhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG-EKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~-~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
|.|+.||+|||.+.++.+|..+|..+||++...|+..++||+...... .||++|++|+++||+.+|+++|+.++..++.
T Consensus 104 ~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~ 183 (811)
T KOG1929|consen 104 FFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLET 183 (811)
T ss_pred ccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccHHHHhhhhcccccccc
Confidence 578999999999999999999999999999999999999988887555 9999999999999999999999999999999
Q ss_pred CCcccCC
Q 011171 80 RPYMLQS 86 (492)
Q Consensus 80 ~~Y~l~s 86 (492)
.+|.+..
T Consensus 184 ~~~e~~~ 190 (811)
T KOG1929|consen 184 KPYEGAP 190 (811)
T ss_pred ccccccc
Confidence 9998743
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.64 E-value=2.7e-08 Score=77.42 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=42.2
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++.||||++.+.+| ++++|||.||..||.+|+.. ...||+|+..+..
T Consensus 1 ~~~Cpi~~~~~~~P-v~~~~G~v~~~~~i~~~~~~------~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDP-VILPSGQTYERRAIEKWLLS------HGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCC-EECCCCCEEeHHHHHHHHHH------CCCCCCCcCCCCh
Confidence 36899999999999 78999999999999999987 5689999987753
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.64 E-value=1.8e-08 Score=98.89 Aligned_cols=53 Identities=34% Similarity=0.881 Sum_probs=43.1
Q ss_pred CCccccccccccccccc-------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 338 SGELSCVICWTEFSSTR-------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~-------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
.++..|+||++.+.++. ++++|+|.||..||.+|+.. ..+||+||..+..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEeeEEee
Confidence 34679999999877531 35689999999999999987 6799999998876543
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.64 E-value=2.1e-08 Score=71.62 Aligned_cols=41 Identities=39% Similarity=1.108 Sum_probs=36.5
Q ss_pred ccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
|+||++.+.+|..+++|||.||..||.+|+.. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 89999999999448999999999999999996 247789998
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=3.8e-08 Score=94.24 Aligned_cols=58 Identities=33% Similarity=0.738 Sum_probs=45.0
Q ss_pred CCcccccccccccccc--------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 338 SGELSCVICWTEFSST--------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p--------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
.++..|+||++...++ .++.+|+|.||..||..|.......+....||+||..+..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 4568999999986432 145589999999999999987444455678999999887654
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.2e-08 Score=95.28 Aligned_cols=54 Identities=33% Similarity=0.771 Sum_probs=46.9
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
...+.|.||++.-.+| +++.|||-||..||.+|+... .....||+|+..++...
T Consensus 45 ~~~FdCNICLd~akdP-VvTlCGHLFCWpClyqWl~~~---~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP-VVTLCGHLFCWPCLYQWLQTR---PNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCceeeeeeccccCCC-EEeecccceehHHHHHHHhhc---CCCeeCCccccccccce
Confidence 3468999999999999 789999999999999999984 35678999999887643
No 20
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.1e-08 Score=98.08 Aligned_cols=50 Identities=34% Similarity=0.937 Sum_probs=44.7
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
+....|.+|++...+| ..+||||.||..||..|... ...||+||..++..
T Consensus 237 ~a~~kC~LCLe~~~~p-SaTpCGHiFCWsCI~~w~~e------k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP-SATPCGHIFCWSCILEWCSE------KAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCC-CcCcCcchHHHHHHHHHHcc------ccCCCcccccCCCc
Confidence 4567999999999999 89999999999999999998 55699999987753
No 21
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.53 E-value=7.3e-08 Score=68.75 Aligned_cols=44 Identities=45% Similarity=1.106 Sum_probs=37.4
Q ss_pred cccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 342 ~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
.|+||++.+.+++.+++|||.||..|+..|+.. ....||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence 499999999877555569999999999999987 36689999875
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=6.1e-08 Score=101.64 Aligned_cols=53 Identities=30% Similarity=0.649 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 334 RSSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 334 ~~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...++..+.|+||++.|.+| ++++|||.||..||..|+.. ...||+|+..+..
T Consensus 20 l~~Le~~l~C~IC~d~~~~P-vitpCgH~FCs~CI~~~l~~------~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVP-VLTSCSHTFCSLCIRRCLSN------QPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccCCCcCchhhhCc-cCCCCCCchhHHHHHHHHhC------CCCCCCCCCcccc
Confidence 35567789999999999999 68999999999999999987 4589999998764
No 23
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.44 E-value=1.3e-07 Score=76.47 Aligned_cols=42 Identities=36% Similarity=0.900 Sum_probs=33.9
Q ss_pred cccccccccccc------------ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 341 LSCVICWTEFSS------------TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 341 l~C~IC~e~~~~------------p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
..|+||++.|.+ ++...+|||.||..||.+|+.. ..+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ------NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT------SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc------CCcCCCCC
Confidence 359999999942 2345689999999999999998 66999997
No 24
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.42 E-value=2.7e-07 Score=103.86 Aligned_cols=85 Identities=26% Similarity=0.386 Sum_probs=82.3
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|+|++|++++....++..|..++..+|+++..+|.+..||||++++.+.||..|.+|+||||+++||..|.++++..+..
T Consensus 494 ~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~~wL~e~~rq~~~~~~e 573 (811)
T KOG1929|consen 494 FENLTISNSQSAEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVTPDWLYECVRQNKGERNE 573 (811)
T ss_pred ccCceEEeeechHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccChhHHHhhccccCcccce
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CcccC
Q 011171 81 PYMLQ 85 (492)
Q Consensus 81 ~Y~l~ 85 (492)
-|+..
T Consensus 574 ~~l~~ 578 (811)
T KOG1929|consen 574 GFLNG 578 (811)
T ss_pred eeccc
Confidence 99874
No 25
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-07 Score=87.58 Aligned_cols=50 Identities=30% Similarity=0.756 Sum_probs=42.5
Q ss_pred CCccccccccccccccc-EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTR-GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~-~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+..+.||||++.+...+ +.+.|||.||..||...+.. ...||+|++.++.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~------~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN------TNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh------CCCCCCcccccch
Confidence 34589999999999653 56899999999999999998 7899999986554
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=1.8e-07 Score=67.88 Aligned_cols=39 Identities=44% Similarity=0.962 Sum_probs=23.3
Q ss_pred cccccccccc----ccEeecCCCcccHHhHHHHHHhhccCCCccCCC
Q 011171 343 CVICWTEFSS----TRGVLACGHRFCYSCIQNWADHMASVRKISTCP 385 (492)
Q Consensus 343 C~IC~e~~~~----p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP 385 (492)
||||.+ |.+ | ++|+|||+||..||.+++.... +....||
T Consensus 1 CpIc~e-~~~~~n~P-~~L~CGH~~c~~cl~~l~~~~~--~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPP-MVLPCGHVFCKDCLQKLSKKSD--RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-E-EE-SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred CCcccc-ccCCCCCC-EEEeCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence 899999 876 7 7899999999999999998721 2466787
No 27
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.3e-07 Score=95.15 Aligned_cols=51 Identities=27% Similarity=0.799 Sum_probs=43.1
Q ss_pred ccccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 341 LSCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 341 l~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
..|+||++.|. +.+.+|||.|.||..||..|+.. ....||+|++.+.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~-----~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ-----TRTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh-----cCccCCCCCCcCCCCCC
Confidence 49999999999 44678999999999999999998 24569999997766443
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.30 E-value=6.6e-07 Score=61.50 Aligned_cols=39 Identities=49% Similarity=1.211 Sum_probs=34.1
Q ss_pred ccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
|+||++....+ +.++|+|.||..|+..|+.. ....||+|
T Consensus 1 C~iC~~~~~~~-~~~~C~H~~c~~C~~~~~~~-----~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP-VVLPCGHTFCRSCIRKWLKS-----GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc-EEecCCChHHHHHHHHHHHh-----CcCCCCCC
Confidence 88999997777 78999999999999999984 26679987
No 29
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.27 E-value=5e-07 Score=65.82 Aligned_cols=42 Identities=33% Similarity=0.994 Sum_probs=34.8
Q ss_pred cccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 342 SCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 342 ~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
.|+||.+.|. .+..+++|||.||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC------CCCCCcCCCC
Confidence 4899999993 3347899999999999999882 3779999985
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.26 E-value=2.4e-07 Score=93.22 Aligned_cols=51 Identities=27% Similarity=0.705 Sum_probs=45.8
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+..-+.|-||.++|..| +++||+|+||.-||..++.. ...||.|..+|+.
T Consensus 19 ~lD~lLRC~IC~eyf~ip-~itpCsHtfCSlCIR~~L~~------~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIP-MITPCSHTFCSLCIRKFLSY------KPQCPTCCVTVTE 69 (442)
T ss_pred hhHHHHHHhHHHHHhcCc-eeccccchHHHHHHHHHhcc------CCCCCceecccch
Confidence 345668999999999999 78999999999999999998 7899999988774
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.21 E-value=9.6e-07 Score=71.40 Aligned_cols=50 Identities=22% Similarity=0.410 Sum_probs=40.5
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
+.+.|||+.+.+.+| +++++||+|+..||..|+.. ....||+|+..+...
T Consensus 3 ~~f~CpIt~~lM~dP-Vi~~~G~tyer~~I~~~l~~-----~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP-VILPSGHTYERSAIERWLEQ-----NGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE-EEETTSEEEEHHHHHHHHCT-----TSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc-eeCCcCCEEcHHHHHHHHHc-----CCCCCCCCCCcCCcc
Confidence 578999999999999 88999999999999999998 378999999887753
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.17 E-value=8.5e-07 Score=87.61 Aligned_cols=51 Identities=29% Similarity=0.649 Sum_probs=45.4
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+...+.|-||.+.|..| +.++|||.||.-||..++.. ...||+||..+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip-~~TtCgHtFCslCIR~hL~~------qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIP-CETTCGHTFCSLCIRRHLGT------QPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecc-eecccccchhHHHHHHHhcC------CCCCccccccHHh
Confidence 445568999999999999 89999999999999999998 7799999988764
No 33
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.14 E-value=4.4e-06 Score=93.50 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHH
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDC 70 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc 70 (492)
|.|.+|+||| |.+..|.+++++|+.+||+++..++++++.||+....|.|.++|.++||+|++.+.+.+=
T Consensus 594 l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~ 664 (669)
T PRK14350 594 LFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSY 664 (669)
T ss_pred cCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHH
Confidence 5789999999 778899999999999999999999999999999987789999999999999999888763
No 34
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.10 E-value=8.7e-07 Score=91.60 Aligned_cols=36 Identities=28% Similarity=0.699 Sum_probs=32.0
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHh
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADH 374 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~ 374 (492)
++++.|+||...|.+| ++|+|+|+.|..|-...+.+
T Consensus 2 eeelkc~vc~~f~~ep-iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP-IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc-eEeecccHHHHHHHHhhccc
Confidence 5789999999999999 89999999999998766543
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.05 E-value=3.3e-06 Score=69.83 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=40.0
Q ss_pred Cccccccccccccc------------ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSS------------TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~------------p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++..|.||...|.. |++.-.|+|.||..||.+|+..+ +....||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~---~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ---SSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc---cCCCCCCCcCCeeee
Confidence 46678888877761 33444799999999999999984 235799999998754
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.4e-06 Score=85.71 Aligned_cols=48 Identities=33% Similarity=0.843 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
....+.+.|+||++.|..| .+++|||+||..||..++.. ...||.||.
T Consensus 8 ~~~~~~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~~------~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREP-VLLPCGHNFCRACLTRSWEG------PLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhcC-ccccccchHhHHHHHHhcCC------CcCCcccCC
Confidence 3456789999999999999 89999999999999998882 689999994
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.7e-06 Score=84.69 Aligned_cols=49 Identities=31% Similarity=0.842 Sum_probs=42.1
Q ss_pred cccccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...|+||++.|. +.++++||.|.||..|+.+|+.. -...||+||.++.+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-----y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-----YSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-----hcccCCccCCCCCC
Confidence 478999999997 34578999999999999999996 27899999987754
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.7e-06 Score=90.22 Aligned_cols=52 Identities=27% Similarity=0.720 Sum_probs=44.0
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+..||||++...-| +.+.|||.||..||.++|... ...+-..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p-~~t~CGHiFC~~CiLqy~~~s-~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-VRTNCGHIFCGPCILQYWNYS-AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-cccccCceeeHHHHHHHHhhh-cccCCccCCchhhhccc
Confidence 78999999999988 667799999999999998873 23345689999988876
No 39
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=98.02 E-value=1.9e-06 Score=93.81 Aligned_cols=74 Identities=31% Similarity=0.467 Sum_probs=68.7
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRR 76 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~ 76 (492)
|.+++.|+||+-..+. .+..+++.|||.+..+++.++|||||.+.++.||..|.-. ++++.++||..|+....-
T Consensus 119 m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~aw~~rn~ 192 (850)
T KOG3524|consen 119 MKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEAWKHRND 192 (850)
T ss_pred hcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhhhcCcch
Confidence 7899999999988777 9999999999999999999999999999999999999986 999999999999886543
No 40
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.3e-06 Score=86.04 Aligned_cols=50 Identities=30% Similarity=0.847 Sum_probs=41.3
Q ss_pred CCccccccccccccccc------------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTR------------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~------------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+-.|.||++.+..|- ..|||||.+|..|++.|+++ ..+||+||.++-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER------qQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER------QQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh------ccCCCcccCcccc
Confidence 35679999999954321 67999999999999999999 6799999998544
No 41
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=98.00 E-value=1.5e-05 Score=89.55 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhh
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
|.|.+|+|||.. ...|.+++.+|+.+||.++..++++++.||+....|.|.++|.++||+|++.+-+.+-+.+
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 578999999965 5699999999999999999999999999999987789999999999999999888876654
No 42
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.96 E-value=1.8e-05 Score=81.13 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC---------CCChhHHHHHhc-----CCeEeccc
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK---------FEGEKHSLAKKF-----RTIIVNHQ 65 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~---------~~~~K~~~A~~~-----~i~IVs~~ 65 (492)
|.|.+|+||| |..-.|.++.++|+.+||+++..++++++.||+.. ..+.|.++|.++ +|+|++.+
T Consensus 221 l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E~ 300 (309)
T PRK06195 221 FKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEE 300 (309)
T ss_pred ccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecHH
Confidence 6789999999 66789999999999999999999999999999984 357899999998 99999875
Q ss_pred cHHH
Q 011171 66 WVED 69 (492)
Q Consensus 66 WL~d 69 (492)
=+.+
T Consensus 301 ~f~~ 304 (309)
T PRK06195 301 EFLQ 304 (309)
T ss_pred HHHH
Confidence 4444
No 43
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.96 E-value=1.6e-05 Score=87.60 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=65.0
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHH
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVED 69 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~d 69 (492)
|.|-+|++|| +.+-.|.+++.+|+.+||++++.+++++..||+....|.|+.+|.++||+|.+.+++..
T Consensus 595 l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 595 LAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 5789999999 77799999999999999999999999999999999889999999999999999988765
No 44
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.93 E-value=2.1e-05 Score=80.81 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC--hhHHHHHhcCCeEeccccHHHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG--EKHSLAKKFRTIIVNHQWVEDCI 71 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~--~K~~~A~~~~i~IVs~~WL~dc~ 71 (492)
|.|.+|+|||=....|.+++++|+.+||+|++.++++++.||+....+ .|.++|.++||+|++.+=+.+=+
T Consensus 233 ~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 233 VQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 468999999944479999999999999999999999999999997656 79999999999999987665543
No 45
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.92 E-value=2.6e-05 Score=87.74 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=65.9
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC-hhHHHHHhcCCeEeccccHHHHHhh
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG-EKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~-~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
|.|.+|+|||.. ...|.+++++|+.+||+++..++++++.||+....| .|.++|.++||+|++.+-|.+=+..
T Consensus 610 l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 610 LDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 678999999954 569999999999999999999999999999997666 7999999999999999888876654
No 46
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.6e-06 Score=81.34 Aligned_cols=50 Identities=34% Similarity=0.891 Sum_probs=42.6
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHH-HHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQN-WADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~-~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..++.|+||++....| ..++|||.||..||.. |-.. ..-.||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~p-s~t~CgHlFC~~Cl~~~~t~~-----k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP-SCTPCGHLFCLSCLLISWTKK-----KYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc-ccccccchhhHHHHHHHHHhh-----ccccCchhhhhccc
Confidence 4578999999999999 8999999999999999 7666 25569999986654
No 47
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.90 E-value=2.2e-05 Score=88.07 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=60.6
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEecccc
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQW 66 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~W 66 (492)
|.|.+|+||| |....|.++..+|+.+||+++..++++++.||+....|.|.++|.++||+|++.+.
T Consensus 585 l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 585 LAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred ccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 5788999999 55679999999999999999999999999999998778899999999999998754
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.83 E-value=3.7e-06 Score=87.71 Aligned_cols=47 Identities=28% Similarity=0.802 Sum_probs=39.7
Q ss_pred CCCCCccccccccccccccc---EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 335 SSTSGELSCVICWTEFSSTR---GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~---~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
..+.+-.+||||++.+...+ +++.|.|+|+..|+..|+.. +||+||.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--------scpvcR~ 219 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--------SCPVCRY 219 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--------cChhhhh
Confidence 44556789999999998653 56789999999999999887 7999985
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.9e-06 Score=85.26 Aligned_cols=58 Identities=26% Similarity=0.585 Sum_probs=47.2
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVE 398 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~ 398 (492)
.+..++.|+||+.++...+.+..|+|.||..||..-+.. +.+.||.||+.+.....+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-----gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-----GNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-----cCCCCchHHhhccccccCC
Confidence 345578999999999988556679999999999888887 5889999999876644433
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.74 E-value=7.1e-06 Score=64.09 Aligned_cols=46 Identities=30% Similarity=0.765 Sum_probs=24.5
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
++-+.|++|.+.+.+|+.+..|.|.||..||..-+.. .||+|..+.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--------~CPvC~~Pa 50 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--------ECPVCHTPA 50 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--------B-SSS--B-
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--------CCCCcCChH
Confidence 3457999999999999556789999999999764433 599998764
No 51
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.73 E-value=1.2e-05 Score=88.50 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=77.3
Q ss_pred CCCcEEEecCCC----cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcC-CeEeccccHHHHHhhcC
Q 011171 1 MESVVATVSGYH----GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFR-TIIVNHQWVEDCIKQHR 75 (492)
Q Consensus 1 ~~g~~I~vSG~~----~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~-i~IVs~~WL~dc~~~~~ 75 (492)
|+|+.+.+||+. ..++..+..+...+|+....+++..+||||+.++++.|..+|...+ ++||++.||+.|+.+|.
T Consensus 442 ~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~ 521 (635)
T KOG0323|consen 442 LKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWG 521 (635)
T ss_pred hhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHHhc
Confidence 568889999954 3456788889999999999999999999999999999999998875 99999999999999999
Q ss_pred CCCCCCcccCC
Q 011171 76 RLPERPYMLQS 86 (492)
Q Consensus 76 ~l~e~~Y~l~s 86 (492)
.++|..|.+..
T Consensus 522 ~v~ek~~~l~~ 532 (635)
T KOG0323|consen 522 KVEEKLEPLDD 532 (635)
T ss_pred chhcccccccc
Confidence 99999998743
No 52
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.3e-05 Score=88.22 Aligned_cols=46 Identities=37% Similarity=0.938 Sum_probs=41.4
Q ss_pred Cccccccccccccc-----ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 339 GELSCVICWTEFSS-----TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 339 e~l~C~IC~e~~~~-----p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
....|+||++.+.. | ..++|+|.||..|+..|+++ ..+||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~-~rL~C~Hifh~~CL~~W~er------~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITP-KRLPCGHIFHDSCLRSWFER------QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhcccccccc-ceeecccchHHHHHHHHHHH------hCcCCcchhhh
Confidence 36799999999997 6 78999999999999999999 77999999843
No 53
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=2.2e-05 Score=79.71 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=38.4
Q ss_pred cccccccccc-ccccc---EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 340 ELSCVICWTE-FSSTR---GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~-~~~p~---~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
+..||+|... +.+|. .+.+|||.||..||...+.. +...||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-----~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-----CCCCCCCCCCccchh
Confidence 4689999985 44552 22279999999999998765 356899999887764
No 54
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.71 E-value=6.8e-05 Score=83.21 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCcEEEe-cCCCcch-HHHHHHHHHhcCCEEecccCCCCcEEEe--cCCCChhHHHHHhcCCeEeccccHHHHHhhcCC
Q 011171 1 MESVVATV-SGYHGTE-RFNLIKLISYSGASYVGTMSKSTTHLVC--WKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRR 76 (492)
Q Consensus 1 ~~g~~I~v-SG~~~~e-r~~i~~li~~~Gg~~~~~lt~~vTHLV~--~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~ 76 (492)
|+|+-||+ +|..... +..+.++|..+||.++..+.+..||.|+ ....+.+-.+|.+.+..||+|.||.||....+.
T Consensus 634 f~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~~~~l 713 (881)
T KOG0966|consen 634 FDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCKKQRL 713 (881)
T ss_pred hcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHhhhhc
Confidence 56666665 6777665 6999999999999999999999999997 344555556666669999999999999999999
Q ss_pred CCCCCccc
Q 011171 77 LPERPYML 84 (492)
Q Consensus 77 l~e~~Y~l 84 (492)
+|..|+.+
T Consensus 714 ~p~~P~~~ 721 (881)
T KOG0966|consen 714 LPWLPRDL 721 (881)
T ss_pred cccccHHH
Confidence 99888866
No 55
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.60 E-value=4.8e-05 Score=85.32 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=65.9
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCC-C-------------------------cEEEec-CCCChhHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKS-T-------------------------THLVCW-KFEGEKHSL 53 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~-v-------------------------THLV~~-~~~~~K~~~ 53 (492)
|.||++.+|+... .+.+...-++.+||.+....-.. - -.||+. .-.+.||-.
T Consensus 926 Fd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KYLe 1004 (1176)
T KOG3548|consen 926 FDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKYLE 1004 (1176)
T ss_pred hcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHHHH
Confidence 7899999999533 33455555556787775443111 1 234443 246789999
Q ss_pred HHhcCCeEeccccHHHHHhhcCCCCCCCcccCCCCc
Q 011171 54 AKKFRTIIVNHQWVEDCIKQHRRLPERPYMLQSGQE 89 (492)
Q Consensus 54 A~~~~i~IVs~~WL~dc~~~~~~l~e~~Y~l~s~~~ 89 (492)
|+++|||.|++.||.+|+.+++.+|..+|+|.+|..
T Consensus 1005 aLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS 1040 (1176)
T KOG3548|consen 1005 ALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYS 1040 (1176)
T ss_pred HHHcCCCcccHHHHHHHHhccccccchhhcccCccc
Confidence 999999999999999999999999999999988864
No 56
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.5e-05 Score=86.62 Aligned_cols=52 Identities=31% Similarity=0.733 Sum_probs=45.1
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...+-+.||+|...+.+. +++.|+|.||..||...+... ...||.|...|..
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~-vI~kC~H~FC~~Cvq~r~etR-----qRKCP~Cn~aFga 690 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDA-VITKCGHVFCEECVQTRYETR-----QRKCPKCNAAFGA 690 (698)
T ss_pred HHHhceeCCCccCchhhH-HHHhcchHHHHHHHHHHHHHh-----cCCCCCCCCCCCc
Confidence 345679999999999887 789999999999999998883 7899999998864
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=9e-05 Score=73.25 Aligned_cols=55 Identities=25% Similarity=0.577 Sum_probs=45.3
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
...+..||+|.+....|.+..+|+|.||+.||..-.... ..+.||.|+.++..++
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~----asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD----ASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch----hhcccCccCCCCcchh
Confidence 345689999999999996677899999999998866652 3789999998877554
No 58
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.37 E-value=0.00018 Score=82.77 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=66.7
Q ss_pred EEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC-CCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCCCcc
Q 011171 5 VATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK-FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPERPYM 83 (492)
Q Consensus 5 ~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~-~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~~Y~ 83 (492)
.+.++++.. ...++..+..+||.+.... ...||+|+.. ..+.|.-.|+..|++||+++||.+|++.|..+++.+|.
T Consensus 661 ~~lfs~~~~--~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yi 737 (896)
T KOG2043|consen 661 EVLFSDKND--GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYI 737 (896)
T ss_pred eeeeeeccC--chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCcccc
Confidence 455666633 3468888999999988877 4889999986 67899999999999999999999999999999999999
Q ss_pred cC
Q 011171 84 LQ 85 (492)
Q Consensus 84 l~ 85 (492)
+.
T Consensus 738 l~ 739 (896)
T KOG2043|consen 738 LH 739 (896)
T ss_pred cc
Confidence 83
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.37 E-value=5.5e-05 Score=76.59 Aligned_cols=54 Identities=22% Similarity=0.595 Sum_probs=46.6
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
.+.....|.+|..+|.++..+.-|.|+||.+||..++.. ...||.|...+...+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~------~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE------SKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH------hccCCccceeccCcc
Confidence 345678999999999999566679999999999999998 889999998877644
No 60
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=97.30 E-value=0.0003 Score=77.85 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=72.4
Q ss_pred cEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC------CCChhHHHHHhcCCeEeccccHHHHHhhcCCC
Q 011171 4 VVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK------FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 4 ~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~------~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l 77 (492)
.+.+++|....+...+.+.+.. ++++.+...+||+|++- ..+.||..++..|.+|++++|+..|++.++.+
T Consensus 479 ~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~~ 555 (684)
T KOG4362|consen 479 LVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRKWV 555 (684)
T ss_pred eeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcCCC
Confidence 4678899999999999888887 78888999999999983 35789999999999999999999999999999
Q ss_pred CCCCcccCCC
Q 011171 78 PERPYMLQSG 87 (492)
Q Consensus 78 ~e~~Y~l~s~ 87 (492)
+|++|.|...
T Consensus 556 ~eepfEl~~d 565 (684)
T KOG4362|consen 556 SEEPFELQID 565 (684)
T ss_pred CCCCeeEeec
Confidence 9999998543
No 61
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=9.5e-05 Score=73.98 Aligned_cols=48 Identities=31% Similarity=0.729 Sum_probs=42.5
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...|+||+....-| +.++|+|.||+-||+..... ....|++||.+|..
T Consensus 7 ~~eC~IC~nt~n~P-v~l~C~HkFCyiCiKGsy~n-----dk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP-VNLYCFHKFCYICIKGSYKN-----DKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC-ccccccchhhhhhhcchhhc-----CCCCCceecCCCCc
Confidence 45899999999999 89999999999999987766 36789999999875
No 62
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.18 E-value=0.00014 Score=71.58 Aligned_cols=46 Identities=35% Similarity=0.885 Sum_probs=40.0
Q ss_pred ccccccCccCCcccccccccCCCCccccccCCCC-----CCCCCCccchhhh
Q 011171 438 EACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPP-----LDPWTCIHCKDLQ 484 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~p-----l~~w~C~~C~e~~ 484 (492)
-.|.+|+..++.+.+++|++|+ |+||.||+.|| .+.|-|..|-+.+
T Consensus 282 k~csicgtsenddqllfcddcd-rgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 282 KYCSICGTSENDDQLLFCDDCD-RGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ceeccccCcCCCceeEeecccC-CceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 5699999999989999999999 69999999955 5679999997654
No 63
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.17 E-value=0.0002 Score=55.26 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=31.7
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCC
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPL 386 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~ 386 (492)
-.+.|||.+..|.+|+....|+|.|....|.+|+.. .+...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~----~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR----NGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT----TS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh----cCCCCCCC
Confidence 458999999999999666799999999999999944 35789998
No 64
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00022 Score=75.22 Aligned_cols=51 Identities=29% Similarity=0.847 Sum_probs=44.7
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...++.|.||...+..| +++||||+||..||.+-+.. ...||.||.++...
T Consensus 81 ~~sef~c~vc~~~l~~p-v~tpcghs~c~~Cl~r~ld~------~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP-VVTPCGHSFCLECLDRSLDQ------ETECPLCRDELVEL 131 (398)
T ss_pred ccchhhhhhhHhhcCCC-ccccccccccHHHHHHHhcc------CCCCcccccccccc
Confidence 35689999999999999 67899999999999997775 78999999988753
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.00 E-value=0.00022 Score=67.31 Aligned_cols=47 Identities=28% Similarity=0.630 Sum_probs=40.7
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.|.||...|..| +++.|||+||..|...-.+. ...|-+|.+....
T Consensus 196 PF~C~iCKkdy~sp-vvt~CGH~FC~~Cai~~y~k------g~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESP-VVTECGHSFCSLCAIRKYQK------GDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccch-hhhhcchhHHHHHHHHHhcc------CCcceecchhhcc
Confidence 47899999999999 78999999999998877766 6789999886543
No 66
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.95 E-value=0.0018 Score=62.19 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCcEEEecCCCc-chHHHHHHHHHhcCCEEecccCCCCcEEEecC-CCChhHHHHHhcCCeEeccccHH
Q 011171 1 MESVVATVSGYHG-TERFNLIKLISYSGASYVGTMSKSTTHLVCWK-FEGEKHSLAKKFRTIIVNHQWVE 68 (492)
Q Consensus 1 ~~g~~I~vSG~~~-~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~-~~~~K~~~A~~~~i~IVs~~WL~ 68 (492)
|.|++|+|+|... .+|..-..+|..+||+++...+.++|.||... ++..|.+.+++++|+++..+=|.
T Consensus 157 L~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~ 226 (276)
T COG5275 157 LKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFD 226 (276)
T ss_pred ccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHH
Confidence 6799999999655 89999999999999999999999999999985 77789999999999998755443
No 67
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.92 E-value=0.00048 Score=55.32 Aligned_cols=55 Identities=27% Similarity=0.682 Sum_probs=26.9
Q ss_pred cccccccccccc-c---ccEe---ecCCCcccHHhHHHHHHhhccCCC-----ccCCCCCCcccccc
Q 011171 340 ELSCVICWTEFS-S---TRGV---LACGHRFCYSCIQNWADHMASVRK-----ISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~~~-~---p~~~---l~CgH~FC~~CI~~~l~~~~~~~~-----~~~CP~Cr~~~~~~ 394 (492)
+..|+||...+. + |.++ ..|+..||..||.+|+........ ...||.|+++++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999998765 2 3211 269999999999999987432211 23699999987653
No 68
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0012 Score=68.29 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecc-----------cCCCCcEEEecCCC-ChhHHHHHhcCCeEeccccHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGT-----------MSKSTTHLVCWKFE-GEKHSLAKKFRTIIVNHQWVE 68 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~-----------lt~~vTHLV~~~~~-~~K~~~A~~~~i~IVs~~WL~ 68 (492)
|+|+++.++.=.. +..|.-+|...||.|... +...+||-||..|. ..||. |..-|.|+||+
T Consensus 351 FS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kve-----grtYiQPQw~f 423 (591)
T COG5163 351 FSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVE-----GRTYIQPQWLF 423 (591)
T ss_pred hhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhhc-----ceeeechHHHH
Confidence 5667777765222 345778899999998543 34688999998763 23443 88999999999
Q ss_pred HHHhhcCCCCCCCccc
Q 011171 69 DCIKQHRRLPERPYML 84 (492)
Q Consensus 69 dc~~~~~~l~e~~Y~l 84 (492)
||+.+|.+.+.+.|..
T Consensus 424 DsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 424 DSINKGKLACVENYCV 439 (591)
T ss_pred hhhccccchhhhhccc
Confidence 9999999999999987
No 69
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=96.85 E-value=0.00051 Score=51.15 Aligned_cols=43 Identities=28% Similarity=0.813 Sum_probs=36.5
Q ss_pred cccccCccCCcccccccccCCCCccccccCCCCC-------CCCCCccchh
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-------DPWTCIHCKD 482 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-------~~w~C~~C~e 482 (492)
+|.+|+.......++.|+.|.. ++|.+|.+++. ..|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~-~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNR-WYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSC-EEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCCh-hhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4888998777789999999995 99999999763 2699999863
No 70
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.74 E-value=0.001 Score=72.69 Aligned_cols=94 Identities=30% Similarity=0.821 Sum_probs=70.3
Q ss_pred CCcccccccccccccccE-ee---cCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccc
Q 011171 338 SGELSCVICWTEFSSTRG-VL---ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIP 413 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~-~l---~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~ 413 (492)
...+.|+||...-..+.. ++ .|+-.||..|+..|+....- .+.+.||-|+.
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l-~~gWrC~~crv------------------------ 70 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVL-SGGWRCPSCRV------------------------ 70 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHh-cCCcccCCcee------------------------
Confidence 345678888876664322 23 57888999999999887421 22478999953
Q ss_pred cccCCCcccccCCCCCCCCCCcccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 414 CAWSTRDVFILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 414 ~~~s~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
|..|+......-.++|..|+. .||.||..|++ ++|+|+.|...
T Consensus 71 --------------------------Ce~c~~~gD~~kf~~Ck~cDv-syh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 71 --------------------------CEACGTTGDPKKFLLCKRCDV-SYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred --------------------------eeeccccCCcccccccccccc-cccccccCCccccccCcccccHHHHhh
Confidence 888886666678899999998 99999999775 47999888643
No 71
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.73 E-value=0.0015 Score=48.77 Aligned_cols=42 Identities=29% Similarity=0.675 Sum_probs=32.7
Q ss_pred cccccccc--cccccEeecCC-----CcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 342 SCVICWTE--FSSTRGVLACG-----HRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 342 ~C~IC~e~--~~~p~~~l~Cg-----H~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
.|-||++. -.++ .+.||. |.+|..|+.+|+... ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~-l~~PC~C~G~~~~vH~~Cl~~W~~~~----~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP-LVSPCRCKGSLKYVHQECLERWINES----GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe-eEeccccCCchhHHHHHHHHHHHHHc----CCCcCCCCC
Confidence 48899982 2345 678985 789999999999883 366999995
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.73 E-value=0.00076 Score=71.49 Aligned_cols=56 Identities=25% Similarity=0.693 Sum_probs=47.3
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVE 398 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~ 398 (492)
..+++.|++|...+.+|+..+.|||.||..|+..|+.. ...||.|+........+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~------~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN------HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc------CcCCcccccccchhhccC
Confidence 67789999999999999333599999999999999998 779999988877655443
No 73
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.72 E-value=0.0011 Score=70.74 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEeccc----------CCCCcEEEecCCC-ChhHHHHHhcCCeEeccccHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTM----------SKSTTHLVCWKFE-GEKHSLAKKFRTIIVNHQWVED 69 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~l----------t~~vTHLV~~~~~-~~K~~~A~~~~i~IVs~~WL~d 69 (492)
|+|+++.++.= --|..|.-+|...||.|+.+- ...+||=|+..|. +.+|. |..-|.|+||+|
T Consensus 328 F~glkFfl~re--VPresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~-----gR~YvQPQWvfD 400 (570)
T KOG2481|consen 328 FSGLKFFLNRE--VPRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVI-----GRTYVQPQWVFD 400 (570)
T ss_pred hhcceeeeecc--CchHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccceee-----eeeeecchhhhh
Confidence 56777777652 346688999999999999882 2357999998764 22332 778899999999
Q ss_pred HHhhcCCCCCCCccc
Q 011171 70 CIKQHRRLPERPYML 84 (492)
Q Consensus 70 c~~~~~~l~e~~Y~l 84 (492)
|+.++.++|.+.|.+
T Consensus 401 svNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 401 SVNARLLLPTEKYFP 415 (570)
T ss_pred hccchhhccHhhhCC
Confidence 999999999999987
No 74
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0011 Score=68.02 Aligned_cols=48 Identities=31% Similarity=0.778 Sum_probs=41.2
Q ss_pred cccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...|.||+....+. ++|||.|. .|..|.+...-+ .+.||+||+++...
T Consensus 290 gkeCVIClse~rdt-~vLPCRHLCLCs~Ca~~Lr~q------~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESRDT-VVLPCRHLCLCSGCAKSLRYQ------TNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCcce-EEecchhhehhHhHHHHHHHh------hcCCCccccchHhh
Confidence 56899999999998 89999996 699998877655 77899999987653
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.67 E-value=0.0014 Score=53.28 Aligned_cols=30 Identities=33% Similarity=0.854 Sum_probs=27.2
Q ss_pred cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 358 ~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
-|.|.||..||.+|+.. ...||++++++..
T Consensus 53 ~CnHaFH~HCI~rWL~T------k~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT------KGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhh------CCCCCCCCceeEE
Confidence 59999999999999998 7799999998764
No 76
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.00052 Score=55.27 Aligned_cols=50 Identities=28% Similarity=0.706 Sum_probs=38.1
Q ss_pred ccccccccccccc------------ccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSS------------TRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~------------p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+..|.||...|.. | .++ -|.|.|+..||.+|+..+. ....||+||+.+..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCP-Lv~G~C~h~fh~hCI~~wl~~~t---sq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCP-LVWGYCLHAFHAHCILKWLNTPT---SQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCc-cHHHHHHHHHHHHHHHHHhcCcc---ccccCCcchheeEe
Confidence 3478888877762 3 223 5999999999999999853 35689999998754
No 77
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.45 E-value=0.0013 Score=74.09 Aligned_cols=53 Identities=26% Similarity=0.742 Sum_probs=41.9
Q ss_pred CCCcccccccccccc--c---c-cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFS--S---T-RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~--~---p-~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
......|+||...+. + | .....|.|.||..|+.+|+.. ++..+||+||.+++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S----s~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS----SARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh----cCCCCCCcccccccc
Confidence 455678999998876 1 2 134469999999999999999 568899999987653
No 78
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.00085 Score=66.24 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=42.8
Q ss_pred Ccccccccccccccc---------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 339 GELSCVICWTEFSST---------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
++-.|.||...+... ...|.|+|.||..||..|--. |+..+||.|+..+....
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv----GKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV----GKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee----cCCCCCchHHHHhhHhh
Confidence 356899999877632 257899999999999999887 56889999998877543
No 79
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0024 Score=66.29 Aligned_cols=60 Identities=27% Similarity=0.751 Sum_probs=43.8
Q ss_pred CCCCCccccccccccccccc------Ee-ecCCCcccHHhHHHHHHhhc-cCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTR------GV-LACGHRFCYSCIQNWADHMA-SVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~------~~-l~CgH~FC~~CI~~~l~~~~-~~~~~~~CP~Cr~~~~~~ 394 (492)
.....+..|.||++...++. .+ .+|.|.||..||..|-...+ .......||.||.....+
T Consensus 156 ~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 156 LQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 33356789999999988652 22 46999999999999985532 112257999999876653
No 80
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.00094 Score=50.43 Aligned_cols=47 Identities=28% Similarity=0.760 Sum_probs=39.2
Q ss_pred ccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 341 LSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..|.||.+...+. ++..|||. .|+.|-.+.+.. ....||+||+++.-
T Consensus 8 dECTICye~pvds-VlYtCGHMCmCy~Cg~rl~~~-----~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS-VLYTCGHMCMCYACGLRLKKA-----LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH-HHHHcchHHhHHHHHHHHHHc-----cCCcCcchhhHHHH
Confidence 5899999999988 67899996 699998877765 37799999998654
No 81
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0024 Score=67.76 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=37.9
Q ss_pred cccccccccccc-----cc-----------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFS-----ST-----------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~-----~p-----------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...|+||+.... .+ -..+||.|.||..|+.+|+... ...||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-----kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-----KLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-----cccCCccCCCCCC
Confidence 457999998654 11 1345999999999999999962 5689999987653
No 82
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0019 Score=64.76 Aligned_cols=47 Identities=28% Similarity=0.585 Sum_probs=41.0
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
+.|-||...|.+| +++.|+|.||..|-..-++. ...|++|.+.+..+
T Consensus 242 f~c~icr~~f~~p-Vvt~c~h~fc~~ca~~~~qk------~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRP-VVTKCGHYFCEVCALKPYQK------GEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccc-hhhcCCceeehhhhcccccc------CCcceecccccccc
Confidence 5799999999999 78999999999998877776 67899999876554
No 83
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.86 E-value=0.0052 Score=68.37 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=61.5
Q ss_pred ccccccccccccccc---Eeec---CCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccc
Q 011171 340 ELSCVICWTEFSSTR---GVLA---CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIP 413 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~---~~l~---CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~ 413 (492)
...|.+|...+.+|+ .+.| |+|.||..||..|..........-.|++|..-|....+.....+.++.+|.++++
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 458889988888742 3444 9999999999999988654455668999999999888888888888888988876
Q ss_pred cccC
Q 011171 414 CAWS 417 (492)
Q Consensus 414 ~~~s 417 (492)
....
T Consensus 176 ~eS~ 179 (1134)
T KOG0825|consen 176 LEST 179 (1134)
T ss_pred eccc
Confidence 4433
No 84
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.81 E-value=0.0041 Score=61.93 Aligned_cols=40 Identities=28% Similarity=0.665 Sum_probs=36.3
Q ss_pred ccccccCccCCcccccccccCCCCccccccCC---CCCCCCCCc
Q 011171 438 EACIECRSQEPQDLLIRCHLCQSRCIHCYCMD---PPLDPWTCI 478 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~---~pl~~w~C~ 478 (492)
-.|.+|.....|+-+++|+.|+ |++|+||.+ .|.+.|.|.
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CD-RG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCD-RGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred HhhhccCCcccchheecccccc-CCCCccccccccccCccchhh
Confidence 4599999999999999999999 699999998 678899996
No 85
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.73 E-value=0.0043 Score=64.30 Aligned_cols=51 Identities=29% Similarity=0.734 Sum_probs=42.7
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
..|-||-+.-.+- .+-||||-.|..|+..|.... ....||.||.++.....
T Consensus 370 eLCKICaendKdv-kIEPCGHLlCt~CLa~WQ~sd----~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDV-KIEPCGHLLCTSCLAAWQDSD----EGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCc-ccccccchHHHHHHHhhcccC----CCCCCCceeeEeccccc
Confidence 4799999988875 788999999999999998773 37799999998876433
No 86
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0063 Score=63.43 Aligned_cols=49 Identities=31% Similarity=0.806 Sum_probs=40.4
Q ss_pred cccccccccccccc----cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 340 ELSCVICWTEFSST----RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 340 ~l~C~IC~e~~~~p----~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
..+||||++.+.-| ++.+.|||-|-..||++|+.. .....||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k----~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK----KTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh----hhhhhCcccCChhH
Confidence 46899999999855 467899999999999999964 34779999976544
No 87
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0067 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.940 Sum_probs=24.9
Q ss_pred cCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 358 ~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
.|.|.||..||.+|++. ...||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt------r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT------RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh------cCcCCCcCcc
Confidence 59999999999999999 7899999775
No 88
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0072 Score=61.84 Aligned_cols=52 Identities=27% Similarity=0.632 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+..++..||||.-...+. +..||+|.-|..||.+++-+ ...|=.|+..+..
T Consensus 417 lp~sEd~lCpICyA~pi~A-vf~PC~H~SC~~CI~qHlmN------~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGPINA-VFAPCSHRSCYGCITQHLMN------CKRCFFCKTTVID 468 (489)
T ss_pred CCCcccccCcceecccchh-hccCCCCchHHHHHHHHHhc------CCeeeEecceeee
Confidence 4446788999999888887 78999999999999999998 7789999886654
No 89
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.34 E-value=0.0091 Score=59.85 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=37.9
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
+.|+.|..++.+|+.+--|+|.||..||...+.. ..+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-----sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-----SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-----ccccCCCccc
Confidence 8999999999999555468999999999987766 3789999976
No 90
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.0086 Score=62.04 Aligned_cols=45 Identities=29% Similarity=0.806 Sum_probs=33.5
Q ss_pred ccccccccccccc--cEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 341 LSCVICWTEFSST--RGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 341 l~C~IC~e~~~~p--~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
..|.||.+.+... +..+ .|||.||..|+.+|+...+ ....||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P---s~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP---SNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC---ccCCCCcee
Confidence 4799996655432 1223 4999999999999999853 125899998
No 91
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0093 Score=62.33 Aligned_cols=52 Identities=27% Similarity=0.581 Sum_probs=38.5
Q ss_pred Cccccccccccccc--ccEeecCCCcccHHhHHHHHHhhc--cCCCccCCCCCCcc
Q 011171 339 GELSCVICWTEFSS--TRGVLACGHRFCYSCIQNWADHMA--SVRKISTCPLCKAS 390 (492)
Q Consensus 339 e~l~C~IC~e~~~~--p~~~l~CgH~FC~~CI~~~l~~~~--~~~~~~~CP~Cr~~ 390 (492)
..+.|.||.+...- -.+.+||+|.||..|+..+..... .......||.++-.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 35789999998873 346789999999999999987642 22234588876543
No 92
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.24 E-value=0.011 Score=69.27 Aligned_cols=57 Identities=28% Similarity=0.575 Sum_probs=41.0
Q ss_pred CCcccccccccccc--cccEeecCCCcccHHhHHHHHHhhcc-CC---CccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMAS-VR---KISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~-~~---~~~~CP~Cr~~~~~~ 394 (492)
..+..|.||..+-- .|.+.|.|+|.||..|....+++.=. .+ +-..||+|+.++.-+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34678999987644 56678999999999999887776210 00 124799999887653
No 93
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.96 E-value=0.011 Score=63.24 Aligned_cols=54 Identities=26% Similarity=0.684 Sum_probs=44.0
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+..|.+|.+.-.++ +...|.|.||..||.+++..-. .+...+||+|...++.
T Consensus 534 k~~~~C~lc~d~aed~-i~s~ChH~FCrlCi~eyv~~f~-~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY-IESSCHHKFCRLCIKEYVESFM-ENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhh-HhhhhhHHHHHHHHHHHHHhhh-cccCCCCccccccccc
Confidence 4567899999999999 7899999999999999887632 2335899999877654
No 95
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.017 Score=61.24 Aligned_cols=54 Identities=30% Similarity=0.720 Sum_probs=39.0
Q ss_pred cccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCC--CCccccc
Q 011171 340 ELSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPL--CKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~--Cr~~~~~ 393 (492)
...|.||......+ ..+..|+|.||..|+.+++......+....||. |...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 56899999444432 125679999999999999987655566778985 6555443
No 96
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=94.78 E-value=0.022 Score=63.03 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=76.0
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|.|+.++|=||...+...+....+..||.+.. =...+||||.......---.|......+|..+|+|-++..|.+.-|.
T Consensus 211 feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~ 289 (850)
T KOG3524|consen 211 FEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIED 289 (850)
T ss_pred ccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeecccceEEEEecchhcccc
Confidence 68999999999999999999999999999999 45689999998766665566666688999999999999999999999
Q ss_pred CcccCCC
Q 011171 81 PYMLQSG 87 (492)
Q Consensus 81 ~Y~l~s~ 87 (492)
.|++..+
T Consensus 290 ~yl~~~~ 296 (850)
T KOG3524|consen 290 NYLLPTG 296 (850)
T ss_pred ceecccc
Confidence 9998655
No 97
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.18 E-value=0.018 Score=59.68 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=40.7
Q ss_pred CCccccccccccccc-c--cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 338 SGELSCVICWTEFSS-T--RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~-p--~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
+-++.|..|.+.+.- | .-.|||.|.||..|+..++.+ .+..+||-||+-.+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~----n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN----NGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh----CCCCCCccHHHHHh
Confidence 346899999998872 2 346899999999999999987 35789999995433
No 98
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.0081 Score=60.14 Aligned_cols=44 Identities=27% Similarity=0.748 Sum_probs=35.4
Q ss_pred CcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
....|.||++...+- +.|+|||. -|..|=. ....||+||+.+..
T Consensus 299 ~~~LC~ICmDaP~DC-vfLeCGHmVtCt~CGk----------rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDC-VFLECGHMVTCTKCGK----------RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCcce-EEeecCcEEeehhhcc----------ccccCchHHHHHHH
Confidence 367899999999998 89999996 5888842 25689999986544
No 99
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.02 E-value=0.023 Score=43.22 Aligned_cols=46 Identities=33% Similarity=0.696 Sum_probs=35.4
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
....|-.|...-... .++||||..|..|..-+- .+.||.|..+|..
T Consensus 6 ~~~~~~~~~~~~~~~-~~~pCgH~I~~~~f~~~r--------YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG-TVLPCGHLICDNCFPGER--------YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccc-ccccccceeeccccChhh--------ccCCCCCCCcccC
Confidence 345677787776666 689999999999975432 5689999998765
No 100
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.046 Score=55.57 Aligned_cols=46 Identities=33% Similarity=0.794 Sum_probs=39.0
Q ss_pred ccccccccccccc------ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 340 ELSCVICWTEFSS------TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 340 ~l~C~IC~e~~~~------p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
.+.|-||-+.|.. | ..|.|||+||..|+...+.. ....||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p-~~l~c~h~~c~~c~~~l~~~-----~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIP-RVLKCGHTICQNCASKLLGN-----SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCC-cccccCceehHhHHHHHhcC-----ceeeccCCCCcc
Confidence 3679999999983 5 67889999999999988887 467889999875
No 101
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.35 E-value=0.064 Score=53.83 Aligned_cols=51 Identities=22% Similarity=0.532 Sum_probs=40.6
Q ss_pred CCCccccccccccccc--c-cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 337 TSGELSCVICWTEFSS--T-RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~--p-~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
....+.|||....|.. + +.+.+|||.|+..+|.+.- . ...||+|..+|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~------~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K------SKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c------cccccccCCccccC
Confidence 3567899999999963 2 3456999999999998874 2 45799999999864
No 102
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=92.94 E-value=0.023 Score=64.32 Aligned_cols=146 Identities=11% Similarity=0.079 Sum_probs=85.6
Q ss_pred CCCcEEEecCCCcchHHHHH-HHHHhcCCEEec--ccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYHGTERFNLI-KLISYSGASYVG--TMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~-~li~~~Gg~~~~--~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l 77 (492)
|.+.+|.++|+..++...+. ..+..+++.... .+...|+|-++.+..-.|. .+ ++..++|+|+.+-+......
T Consensus 162 ~~~n~ikinG~~E~~~~dlepp~gv~~d~~~~~~~~~rd~v~~~l~~~~l~n~~-f~---n~~~~sP~~~~~k~~~a~~~ 237 (1016)
T KOG2093|consen 162 FKNNVIKINGYNEPESLDLEPPSGVLHDKAEDDSTSARDHVDHELAGNLLLNKR-FV---NIENTSPDWIVDKELTAHTG 237 (1016)
T ss_pred cccceeeecCCCCccccccCCCcccccchhhhhhhhHHHHHHHHhccccccccc-cc---eeeecCchhhhhhhhhhccC
Confidence 56789999999877764444 221222222222 2235678887765322222 22 89999999999999999888
Q ss_pred CCCCcc---cCCCCccCCC-ccCCCc---CCCC---------------------C-CCCccccCCCccccccchhhhhhh
Q 011171 78 PERPYM---LQSGQEIGPL-LLEVPL---FNMN---------------------S-DRSNLDDNSKNEETDMRFEVSELA 128 (492)
Q Consensus 78 ~e~~Y~---l~s~~~~~~~-~~~~p~---~~~~---------------------~-~r~~~k~~~~~~~~~~~~~~~~~~ 128 (492)
+...|. ..++-..... .+..|. ++.. + .|-..-.+...+-..-|.
T Consensus 238 ~~~~~Ss~~~TS~~~~~s~a~~~~~~~nfis~~~~ts~LH~~S~~k~~~~~~v~~~~r~~~gnn~~~kR~~~~d------ 311 (1016)
T KOG2093|consen 238 TGQNYSSEMNTSGLSTYSIAADNKPTVNFISEFYSTSRLHKGSDNKGVHAQFVNGLKRQANGNNSFTKRESLKD------ 311 (1016)
T ss_pred CcccccccccccccchhhhhcccCcccccccchhhhhhhhhcchhhhhHHhhhhccccccCCCCcccchhhhhc------
Confidence 888887 4444332222 112221 0000 0 011111111111112222
Q ss_pred ccccccccccccccccCCCCCcccccccchhhhhhh
Q 011171 129 GWKGSFLLNENLLPKFGKSENTSHKCKSKSFKRASK 164 (492)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (492)
+++|+.+|| +++|+||.|+|+.+.+..=
T Consensus 312 ---~~nf~~ny~-----a~sRlh~is~~~~dmk~fF 339 (1016)
T KOG2093|consen 312 ---DPNFVENYF-----ANSRLHFISTWHNDMKDFF 339 (1016)
T ss_pred ---CccHHHHHh-----cchhhhHHHHHHHhhhhhh
Confidence 788999999 9999999999999887653
No 103
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.68 E-value=0.064 Score=39.87 Aligned_cols=44 Identities=25% Similarity=0.789 Sum_probs=21.3
Q ss_pred ccccccccccc-cEee--cCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 343 CVICWTEFSST-RGVL--ACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 343 C~IC~e~~~~p-~~~l--~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
||+|.+.+... ...+ +||+.+|..|....+.. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-----~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-----EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-----S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-----cCCCCCCCCCCC
Confidence 78999888421 1234 57999999998887764 377999999865
No 104
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=92.66 E-value=0.22 Score=52.39 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=63.5
Q ss_pred CCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC--CCChhHHHHHhcCCeEeccccHHHHHh
Q 011171 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK--FEGEKHSLAKKFRTIIVNHQWVEDCIK 72 (492)
Q Consensus 2 ~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~--~~~~K~~~A~~~~i~IVs~~WL~dc~~ 72 (492)
.|+.|+|+|=..-++..|++.+...|=.|+..+++.+.-|||+. ...-|-..|...|||+|+-.=+.+.+.
T Consensus 296 ~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 296 AGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 58999999988889999999999999999999999999999996 456888889999999999877777665
No 105
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.089 Score=51.72 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=42.1
Q ss_pred Ccccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.||||.+.+.+. .++-+|||.||..|+++++.. -..||+|..++.-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~------D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK------DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc------cccccCCCCcCccc
Confidence 568999999999975 245589999999999999887 67999999876653
No 106
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.07 Score=55.15 Aligned_cols=47 Identities=28% Similarity=0.698 Sum_probs=36.3
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.....|.||++...+. +-+||||.-| |..-... ...||+||+.+...
T Consensus 303 ~~p~lcVVcl~e~~~~-~fvpcGh~cc--ct~cs~~-------l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSA-VFVPCGHVCC--CTLCSKH-------LPQCPVCRQRIRLV 349 (355)
T ss_pred CCCCceEEecCCccce-eeecCCcEEE--chHHHhh-------CCCCchhHHHHHHH
Confidence 3456899999999997 7899999877 7654333 45699999877653
No 107
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.00 E-value=0.055 Score=53.11 Aligned_cols=50 Identities=32% Similarity=0.610 Sum_probs=34.4
Q ss_pred ccccccccccc-cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcc
Q 011171 341 LSCVICWTEFS-STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVE 398 (492)
Q Consensus 341 l~C~IC~e~~~-~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~ 398 (492)
..|-.|..--. +|..++.|+|.||..|...- ....||+|++++..+....
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--------~~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--------SPDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC--------Cccccccccceeeeeeccc
Confidence 35666665444 55568899999999997431 1238999999976654433
No 108
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.93 E-value=0.13 Score=46.03 Aligned_cols=54 Identities=30% Similarity=0.593 Sum_probs=43.2
Q ss_pred CcccccccccccccccEeec---CCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 339 GELSCVICWTEFSSTRGVLA---CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~---CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
.-..|-||.+...+....-| ||-+.|..|-...|+... ....||+|+.+|....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~---~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN---LYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc---cCCCCCcccccccccc
Confidence 46799999999988744433 999999999999888742 4679999999887643
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.21 Score=53.94 Aligned_cols=57 Identities=26% Similarity=0.575 Sum_probs=41.2
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCc--cCCCC--CCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKI--STCPL--CKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~--~~CP~--Cr~~~~~~ 394 (492)
.....|.||.+.+......+.|||.||..|+..++...-..+.. ..||. |.+.+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 34579999999998533678999999999999998875333323 46764 76665543
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.83 E-value=0.082 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.524 Sum_probs=25.5
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
+.|||....+..|+....|.|.-|++ +..|+..... ...+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~-~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQR-TPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHH-S---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhc-cCCeECcCCcCc
Confidence 68999999999997777899987765 4455554321 235899999863
No 111
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=91.55 E-value=0.085 Score=61.86 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=38.7
Q ss_pred cccccccccCccCCc--ccccccccCCCCccccccCC---CCCCCCCCccch
Q 011171 435 SLLEACIECRSQEPQ--DLLIRCHLCQSRCIHCYCMD---PPLDPWTCIHCK 481 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e--~~~~~C~~C~~~~~Hs~C~~---~pl~~w~C~~C~ 481 (492)
....+|.+|.+.+-. ++.++|+.|+. ++|.+|-+ +|.+.|+|-.|-
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl-~VHq~Cygi~~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNL-AVHQECYGIPFIPEGQWLCRRCL 267 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcc-hhhhhccCCCCCCCCcEeehhhc
Confidence 345789999987655 79999999998 99999999 456779999993
No 112
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.32 E-value=0.074 Score=59.29 Aligned_cols=46 Identities=30% Similarity=0.819 Sum_probs=39.0
Q ss_pred cccccccccCccCCc--ccccccccCCCCccccccCC---CCCCCCCCccch
Q 011171 435 SLLEACIECRSQEPQ--DLLIRCHLCQSRCIHCYCMD---PPLDPWTCIHCK 481 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e--~~~~~C~~C~~~~~Hs~C~~---~pl~~w~C~~C~ 481 (492)
...+.|++|...+.+ +.+++|+.|.. .+|.-|-+ .|.++|.|..|.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~-cVHqaCyGIle~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNI-CVHQACYGILEVPEGPWLCRTCA 319 (893)
T ss_pred cccceeceecCCCccccceeEEeccchh-HHHHhhhceeecCCCCeeehhcc
Confidence 356899999987544 47899999998 99999998 688999999995
No 113
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=0.1 Score=59.19 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=39.9
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
...|.+|...+.-|.+-..|||.||.+|+. + +...||.|+......+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~------~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D------KEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---c------CcccCCccchhhhhhHH
Confidence 468999999999998889999999999997 2 37789999886555433
No 114
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.60 E-value=0.1 Score=57.33 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=36.3
Q ss_pred ccccccCccCCcccccccccCCCCccccccCCCCC-------CCCCCccchhh
Q 011171 438 EACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-------DPWTCIHCKDL 483 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-------~~w~C~~C~e~ 483 (492)
.+|..|.....-.-.+.|+.|.. .+|.+|++||+ +.|+|+.|...
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~-sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPR-SFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccccceeecCCch-HHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 58999998754334589999995 99999999885 35999999754
No 115
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.51 E-value=0.3 Score=45.21 Aligned_cols=57 Identities=19% Similarity=0.542 Sum_probs=37.7
Q ss_pred CcccccccccccccccEeecC------------CCcc-cHHhHHHHHHhhcc-------------------------CCC
Q 011171 339 GELSCVICWTEFSSTRGVLAC------------GHRF-CYSCIQNWADHMAS-------------------------VRK 380 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~C------------gH~F-C~~CI~~~l~~~~~-------------------------~~~ 380 (492)
++..||||++...+. ++|-| +.+| +..|+.++.+.... ...
T Consensus 1 ed~~CpICme~PHNA-VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA-VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CCccCceeccCCCce-EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 457899999999998 66644 3222 56788887654211 112
Q ss_pred ccCCCCCCcccccchh
Q 011171 381 ISTCPLCKASFMSITK 396 (492)
Q Consensus 381 ~~~CP~Cr~~~~~~~~ 396 (492)
...||+||..+..-..
T Consensus 80 ~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTV 95 (162)
T ss_pred cccCccccCceeceEE
Confidence 4579999988775433
No 116
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=90.49 E-value=0.13 Score=55.10 Aligned_cols=44 Identities=34% Similarity=0.867 Sum_probs=38.8
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCCCCC---------CCCccch
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPLDP---------WTCIHCK 481 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl~~---------w~C~~C~ 481 (492)
...|.+|........+..|+.|.. -||--|++|||+. |.|.+|+
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~l-hYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHL-HYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhc-eeeccccCCccccCcccccCcceeecccc
Confidence 477999998877789999999998 9999999999852 9999994
No 117
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=90.22 E-value=0.16 Score=51.45 Aligned_cols=34 Identities=29% Similarity=0.754 Sum_probs=29.7
Q ss_pred cccccccc--CCCCccccccCC---CCCCCCCCccchhh
Q 011171 450 DLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 450 ~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
-.++-|+. |...|+|.-|.+ +|.+.|||+.|...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 57888997 996699999999 78889999999754
No 118
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=90.17 E-value=0.1 Score=52.61 Aligned_cols=55 Identities=25% Similarity=0.608 Sum_probs=39.6
Q ss_pred Cccccccccccccc-c-cEeecCCCcccHHhHHHHHHhh-----------------ccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSS-T-RGVLACGHRFCYSCIQNWADHM-----------------ASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~-p-~~~l~CgH~FC~~CI~~~l~~~-----------------~~~~~~~~CP~Cr~~~~~ 393 (492)
....|.||+--|.+ | ...++|-|-||..|+.+++... ........||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35689999999984 3 4678999999999998877431 001113479999987653
No 119
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.3 Score=49.94 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=39.2
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
.+...||||+..-.+|.+..--|-.||..||-.++.. ...||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~------~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN------YGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh------cCCCCccCCcc
Confidence 3456899999999999554556999999999999998 78999865543
No 120
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.04 E-value=0.12 Score=58.45 Aligned_cols=48 Identities=29% Similarity=0.737 Sum_probs=39.6
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..|.||.+ ...+ +..+|+|.||..|+...+... ....||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~-~it~c~h~~c~~c~~~~i~~~----~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSF-FITRCGHDFCVECLKKSIQQS----ENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccc-eeecccchHHHHHHHhccccc----cCCCCcHHHHHHHHH
Confidence 79999999 5555 889999999999999988874 244799999876643
No 121
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.69 E-value=0.12 Score=43.95 Aligned_cols=33 Identities=30% Similarity=0.724 Sum_probs=27.1
Q ss_pred CCCcccccccccccccc-cEeecCCCcccHHhHH
Q 011171 337 TSGELSCVICWTEFSST-RGVLACGHRFCYSCIQ 369 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p-~~~l~CgH~FC~~CI~ 369 (492)
+.+...|++|...+.+. ..+.||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35567899999999865 4577999999999975
No 122
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=89.02 E-value=0.16 Score=54.31 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=40.9
Q ss_pred cccccccCccCC--cccccccccCCCCccccccCC---CCCCCCCCccch--hh--h-ccccccC
Q 011171 437 LEACIECRSQEP--QDLLIRCHLCQSRCIHCYCMD---PPLDPWTCIHCK--DL--Q-MLYNRSN 491 (492)
Q Consensus 437 ~~~C~~C~~~~~--e~~~~~C~~C~~~~~Hs~C~~---~pl~~w~C~~C~--e~--~-~~yCr~~ 491 (492)
...|.+|.+.+. -++.++|+.|+. ++|..|-+ .|.+.|.|..|- +. + ..||.++
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i-~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~ 256 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEI-CVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSS 256 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcch-hhhhhcccceecCcchhhhhhhcccccceeEEEeccCC
Confidence 467999987644 468999999997 99999999 567789999983 22 2 5566554
No 123
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.82 E-value=0.38 Score=49.47 Aligned_cols=54 Identities=22% Similarity=0.607 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...++...|.||-+-+.-. .++||+|..|.-|-.+.-.-. ....||+||..-..
T Consensus 56 dtDEen~~C~ICA~~~TYs-~~~PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e~ 109 (493)
T COG5236 56 DTDEENMNCQICAGSTTYS-ARYPCGHQICHACAVRLRALY----MQKGCPLCRTETEA 109 (493)
T ss_pred ccccccceeEEecCCceEE-EeccCCchHHHHHHHHHHHHH----hccCCCccccccce
Confidence 3445678999999988865 689999999999986643331 26789999987554
No 124
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=88.52 E-value=0.46 Score=44.02 Aligned_cols=53 Identities=19% Similarity=0.520 Sum_probs=39.6
Q ss_pred CCcccccccccccccccEeecCCC-----cccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 338 SGELSCVICWTEFSSTRGVLACGH-----RFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH-----~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
..+..|=||.+... + ..-||.- .-|..|+++|+.. ++...|++|+.++.....
T Consensus 6 ~~~~~CRIC~~~~~-~-~~~PC~CkGs~k~VH~sCL~rWi~~----s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 6 LMDKCCWICKDEYD-V-VTNYCNCKNENKIVHKECLEEWINT----SKNKSCKICNGPYNIKKN 63 (162)
T ss_pred CCCCeeEecCCCCC-C-ccCCcccCCCchHHHHHHHHHHHhc----CCCCcccccCCeEEEEEe
Confidence 34568999998864 3 3457654 2399999999998 457899999999876533
No 125
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.13 E-value=0.17 Score=55.82 Aligned_cols=38 Identities=32% Similarity=0.546 Sum_probs=31.0
Q ss_pred CCCCcccccccccccc----cccEeecCCCcccHHhHHHHHHh
Q 011171 336 STSGELSCVICWTEFS----STRGVLACGHRFCYSCIQNWADH 374 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~----~p~~~l~CgH~FC~~CI~~~l~~ 374 (492)
.+.+.+.|+||+..|. .| +.+.|||+.|..|++.....
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~P-vsl~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEP-VSLQCGHTICGHCVQLLYNA 48 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCc-ccccccchHHHHHHHhHhhc
Confidence 3456789999988887 46 67899999999999876665
No 126
>PHA03096 p28-like protein; Provisional
Probab=87.95 E-value=0.28 Score=49.90 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=33.1
Q ss_pred ccccccccccccc------cEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 341 LSCVICWTEFSST------RGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 341 l~C~IC~e~~~~p------~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
-.|.||++..... -.+| .|.|.||..|+..|............||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~ 234 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNT 234 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhh
Confidence 5799999976631 1234 69999999999999987543222334444544
No 127
>PHA02862 5L protein; Provisional
Probab=87.68 E-value=0.47 Score=43.22 Aligned_cols=50 Identities=26% Similarity=0.504 Sum_probs=38.3
Q ss_pred ccccccccccccccEeecCCC-----cccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 341 LSCVICWTEFSSTRGVLACGH-----RFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH-----~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
..|=||.+.-.+. .-||.- --|..|+.+|+.. +....||+|+.++.....
T Consensus 3 diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~----S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 3 DICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINY----SKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhc----CCCcCccCCCCeEEEEEc
Confidence 4789999987554 367643 3599999999977 457899999999876544
No 128
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=0.44 Score=48.06 Aligned_cols=46 Identities=28% Similarity=0.701 Sum_probs=35.7
Q ss_pred cccccccc-ccccc---EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 342 SCVICWTE-FSSTR---GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 342 ~C~IC~e~-~~~p~---~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
.||+|... |.+|- .+-+|+|..|-+|+...+.. +...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-----g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-----GPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-----CCCCCCcccchhh
Confidence 59999864 44662 22389999999999999887 4789999977544
No 129
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=87.09 E-value=0.29 Score=54.39 Aligned_cols=44 Identities=27% Similarity=0.816 Sum_probs=36.7
Q ss_pred ccccccCcc--CCcccccccc--cCCCCccccccCC---CCCCCCCCccchh
Q 011171 438 EACIECRSQ--EPQDLLIRCH--LCQSRCIHCYCMD---PPLDPWTCIHCKD 482 (492)
Q Consensus 438 ~~C~~C~~~--~~e~~~~~C~--~C~~~~~Hs~C~~---~pl~~w~C~~C~e 482 (492)
.-|.||.+. =.|+.++||| .|.+ ++|.-|-+ +|.++|||..|..
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsV-AVHQaCYGIvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSV-AVHQACYGIVQVPTGPWFCRKCES 56 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCcee-eeehhcceeEecCCCchhhhhhhh
Confidence 349999854 4566899999 4998 99999998 8999999999953
No 130
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.24 Score=50.30 Aligned_cols=49 Identities=27% Similarity=0.610 Sum_probs=34.5
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
.-.|.-|-..+..--.++||.|.||++|-.. .. .+.||.|...+..+..
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~------dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS------DKICPLCDDRVQRIEQ 138 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--Cc------cccCcCcccHHHHHHH
Confidence 3567888765553225789999999999632 21 5689999888776544
No 131
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.81 E-value=0.35 Score=55.33 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCCcccccccccccc-cccEeecCCCcccHHhHHHHHHh
Q 011171 337 TSGELSCVICWTEFS-STRGVLACGHRFCYSCIQNWADH 374 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~-~p~~~l~CgH~FC~~CI~~~l~~ 374 (492)
++....|.+|...+. .|-.+.||||.||..||.+....
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 345679999998776 67678899999999999886543
No 132
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=86.53 E-value=0.34 Score=47.95 Aligned_cols=42 Identities=26% Similarity=0.737 Sum_probs=34.3
Q ss_pred cccCccCCcccccccc--cCCCCccccccCC---CCCCCCCCccchhh
Q 011171 441 IECRSQEPQDLLIRCH--LCQSRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 441 ~~C~~~~~e~~~~~C~--~C~~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
.+|..... -.++-|+ .|.-.|+|.-|.+ ||.+.|||++|.+.
T Consensus 224 CfCqqvSy-GqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 224 CFCQQVSY-GQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred EEeccccc-ccceecCCCCCchhheeccccccCCCCCCcEeCHHhHhc
Confidence 36765544 5788898 5999999999999 88999999999864
No 133
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=86.09 E-value=0.22 Score=60.64 Aligned_cols=47 Identities=26% Similarity=0.772 Sum_probs=40.9
Q ss_pred cccccccCccCCcccccccccCCCCccccccCC-----CCCCCCCCccchhhh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMD-----PPLDPWTCIHCKDLQ 484 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~-----~pl~~w~C~~C~e~~ 484 (492)
...|.+|........++.|+.|.. ++|.||.. +|...|+|+.|+..+
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~-~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLS-GFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhh-hHHHHhhhhhhccCCcCCccCCccchhh
Confidence 578999998877789999999997 99999998 455679999997765
No 134
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.84 E-value=0.6 Score=53.18 Aligned_cols=56 Identities=27% Similarity=0.612 Sum_probs=40.7
Q ss_pred CCCcccccccccccccccEee---cCCCcccHHhHHHHHHhhc-cCCCccCCCCCCcccc
Q 011171 337 TSGELSCVICWTEFSSTRGVL---ACGHRFCYSCIQNWADHMA-SVRKISTCPLCKASFM 392 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l---~CgH~FC~~CI~~~l~~~~-~~~~~~~CP~Cr~~~~ 392 (492)
....+.|.||.+.+.....+. .|-|.||..||..|..... .....+.||.|..+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345689999999987321234 4779999999999998732 2235789999985444
No 135
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=85.60 E-value=0.37 Score=51.83 Aligned_cols=128 Identities=16% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCcccccccccccccc---c-EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccc
Q 011171 338 SGELSCVICWTEFSST---R-GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIP 413 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p---~-~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~ 413 (492)
.+++.|.||......| + ..-.|++.++..|-..-+... ....+--|..+..............-+ ..++
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~----~~~~~~~c~~~~~~~~g~a~K~g~~a~---~~l~ 153 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSL----DIGESTECVFPIFSQEGGALKKGRLAR---PSLP 153 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcC----Ccccccccccccccccccccccccccc---cccc
Confidence 3567899999887765 1 233588889888865544331 123333366655443332211100000 0000
Q ss_pred cccCCCcccccCC-CCCCCCCCcccccccccCcc--CCcccccccccCCCCccccccCCCCCC---------CCCCccch
Q 011171 414 CAWSTRDVFILPD-GDSASVQPSLLEACIECRSQ--EPQDLLIRCHLCQSRCIHCYCMDPPLD---------PWTCIHCK 481 (492)
Q Consensus 414 ~~~s~~~~~~~~~-~~~~~~~~~~~~~C~~C~~~--~~e~~~~~C~~C~~~~~Hs~C~~~pl~---------~w~C~~C~ 481 (492)
+-... +.+. .......|.+|... ...+-++.|+.|.. |||.-|..|+.. .|+|..|.
T Consensus 154 --------y~~~~l~wD~--~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~-~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 154 --------YPEASLDWDS--GHKVNLQCSVCYCGGPGAGNRMLQCDKCRQ-WYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred --------CcccccccCc--cccccceeeeeecCCcCccceeeeeccccc-HHHHHhccCCCCHhhccCccceEeehhhc
Confidence 00000 0011 11223559999843 22347899999996 999999986632 59999996
Q ss_pred hh
Q 011171 482 DL 483 (492)
Q Consensus 482 e~ 483 (492)
.-
T Consensus 223 ~~ 224 (464)
T KOG4323|consen 223 RG 224 (464)
T ss_pred cc
Confidence 43
No 136
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.07 E-value=0.87 Score=42.85 Aligned_cols=57 Identities=21% Similarity=0.553 Sum_probs=38.5
Q ss_pred Cccccccccccccccc------EeecCCCcccHHhHHHHHHhhccCCCc-----cCCCCCCcccccch
Q 011171 339 GELSCVICWTEFSSTR------GVLACGHRFCYSCIQNWADHMASVRKI-----STCPLCKASFMSIT 395 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~------~~l~CgH~FC~~CI~~~l~~~~~~~~~-----~~CP~Cr~~~~~~~ 395 (492)
+..-|.||..+-.+-. -...||..||.-|+..|++.-...+.+ ..||.|..++...+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3457999986544320 134799999999999999863211112 37999998876543
No 137
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=83.97 E-value=0.75 Score=33.93 Aligned_cols=41 Identities=22% Similarity=0.588 Sum_probs=26.4
Q ss_pred ccccccccccc-cEeecCCC-----cccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSST-RGVLACGH-----RFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p-~~~l~CgH-----~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
|-||++...+. ..+.||.- ..|..|+.+|+... +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~----~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES----GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH----T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc----CCCcCCCC
Confidence 66888876632 25678753 45899999999983 46779987
No 138
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=0.87 Score=47.84 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCcccccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 337 TSGELSCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
....+.|||=.+.-. +|...|.|||..+..-|.+..... ...+.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng---~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNG---SQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCC---CeeeeCCCCCcc
Confidence 345689999777665 555899999999999998887762 114899999654
No 139
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=0.96 Score=44.07 Aligned_cols=54 Identities=24% Similarity=0.583 Sum_probs=40.7
Q ss_pred cccccccccccccc-cEeecCCCcccHHhHHHHHHhhcc--CCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSST-RGVLACGHRFCYSCIQNWADHMAS--VRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p-~~~l~CgH~FC~~CI~~~l~~~~~--~~~~~~CP~Cr~~~~~ 393 (492)
...|.+|...+..- .+.|-|-|.||..|+.+|...-.. ......||.|..++-.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 45799999988732 267899999999999999876321 1224689999987654
No 140
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=83.11 E-value=0.87 Score=52.13 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=67.2
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEe-cccCCCCcEEEecCCCChhHHHHHhcCC-eEeccccHHHHHhhcCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYV-GTMSKSTTHLVCWKFEGEKHSLAKKFRT-IIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~-~~lt~~vTHLV~~~~~~~K~~~A~~~~i-~IVs~~WL~dc~~~~~~l~ 78 (492)
|.++-|++.|.......+++..-..+||.+. .+....+||+|+......+.+ ...+ ...++.|+.+|.+.+..+.
T Consensus 48 fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~~~~~~~ 124 (1016)
T KOG2093|consen 48 FSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCENGMDVG 124 (1016)
T ss_pred eeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHhccCccc
Confidence 5688888999888888889988899999998 566678999999876544432 2233 4568899999999999999
Q ss_pred CCCcccCCCC
Q 011171 79 ERPYMLQSGQ 88 (492)
Q Consensus 79 e~~Y~l~s~~ 88 (492)
..+|.+..+.
T Consensus 125 ~~~~~~~t~~ 134 (1016)
T KOG2093|consen 125 YYPYQLYTGQ 134 (1016)
T ss_pred cccceeeccc
Confidence 9999876554
No 141
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.92 E-value=0.76 Score=47.12 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=37.9
Q ss_pred CCCCcccccccccccccccEeecC--CCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLAC--GHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~C--gH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..-+-+.||||.+.+..|+ ..| ||.-|..|-.+ ....||.|+.++..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi--~QC~nGHlaCssC~~~---------~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPI--FQCDNGHLACSSCRTK---------VSNKCPTCRLPIGNI 93 (299)
T ss_pred cchhhccCchhhccCcccc--eecCCCcEehhhhhhh---------hcccCCccccccccH
Confidence 3345689999999999994 556 89999999652 256899999988754
No 142
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.67 E-value=0.48 Score=46.52 Aligned_cols=49 Identities=22% Similarity=0.610 Sum_probs=36.5
Q ss_pred Ccccccccccc-cccc-cE--eec-CCCcccHHhHHHHHHhhccCCCccCCC--CCCcccc
Q 011171 339 GELSCVICWTE-FSST-RG--VLA-CGHRFCYSCIQNWADHMASVRKISTCP--LCKASFM 392 (492)
Q Consensus 339 e~l~C~IC~e~-~~~p-~~--~l~-CgH~FC~~CI~~~l~~~~~~~~~~~CP--~Cr~~~~ 392 (492)
.+..||||... |-+| +. +-| |-|..|.+|+.+.+.. +...|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-----GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-----GPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-----CCCCCCCccHHHHHH
Confidence 34589999965 4466 22 225 9999999999999988 478899 6866443
No 143
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=82.52 E-value=1.3 Score=32.16 Aligned_cols=41 Identities=22% Similarity=0.584 Sum_probs=23.3
Q ss_pred ccccccccccccEee--cCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 343 CVICWTEFSSTRGVL--ACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 343 C~IC~e~~~~p~~~l--~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
|.+|.++...-+.-. .|+-.+|..|+..++... ....||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~----~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHR----SNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-----SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcC----CCCCCcCC
Confidence 678888887652222 598899999999999883 24479987
No 144
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.22 E-value=0.49 Score=56.14 Aligned_cols=46 Identities=37% Similarity=0.925 Sum_probs=40.1
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
.....|+||++.+.+-..+..|||.+|..|+..|+.. ...||.|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~------~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA------SSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH------hccCcchhh
Confidence 3456999999999955478899999999999999999 778999974
No 145
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.73 E-value=0.99 Score=46.43 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=34.2
Q ss_pred ccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 341 LSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 341 l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
.-||+|.+.+... ..--+||-..|.-|.....+. -...||.||..+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-----lngrcpacrr~y~ 64 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-----LNGRCPACRRKYD 64 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-----ccCCChHhhhhcc
Confidence 3499999987632 122468888899998766555 2668999998655
No 146
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=80.65 E-value=0.89 Score=45.98 Aligned_cols=44 Identities=34% Similarity=0.725 Sum_probs=35.5
Q ss_pred ccccccccccccc---ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 340 ELSCVICWTEFSS---TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 340 ~l~C~IC~e~~~~---p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
...||||.+.+.. .+..++|||.-+..|+...... ...||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~------~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE------GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc------CCCCCcccc
Confidence 3459999998762 2367899999999998887776 489999987
No 147
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.45 E-value=0.82 Score=33.84 Aligned_cols=44 Identities=25% Similarity=0.854 Sum_probs=25.5
Q ss_pred ccccccccccccccEeecCC-CcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 341 LSCVICWTEFSSTRGVLACG-HRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~Cg-H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+.|--|+-... ....|. |-.|..|+...+.. +..||+|+.+++.
T Consensus 3 ~nCKsCWf~~k---~Li~C~dHYLCl~CLt~ml~~------s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFANK---GLIKCSDHYLCLNCLTLMLSR------SDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S--S---SEEE-SS-EEEHHHHHHT-SS------SSEETTTTEE---
T ss_pred ccChhhhhcCC---CeeeecchhHHHHHHHHHhcc------ccCCCcccCcCcc
Confidence 45666765544 457886 77799999998887 7899999987654
No 148
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=79.82 E-value=0.82 Score=41.30 Aligned_cols=35 Identities=23% Similarity=0.676 Sum_probs=28.4
Q ss_pred ccccccccccccc--ccEeecCC------CcccHHhHHHHHHh
Q 011171 340 ELSCVICWTEFSS--TRGVLACG------HRFCYSCIQNWADH 374 (492)
Q Consensus 340 ~l~C~IC~e~~~~--p~~~l~Cg------H~FC~~CI~~~l~~ 374 (492)
...|.||++...+ -++.++|| |.||..|+.+|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 5789999999987 55666775 78999999999544
No 149
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=78.79 E-value=3.4 Score=47.13 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=52.1
Q ss_pred cCCCcchHHHHHHHHHhcCCEEeccc------CCCCcEEEecCCC--C--hhHHHHHhc--CCeEeccccHHHHHhhcCC
Q 011171 9 SGYHGTERFNLIKLISYSGASYVGTM------SKSTTHLVCWKFE--G--EKHSLAKKF--RTIIVNHQWVEDCIKQHRR 76 (492)
Q Consensus 9 SG~~~~er~~i~~li~~~Gg~~~~~l------t~~vTHLV~~~~~--~--~K~~~A~~~--~i~IVs~~WL~dc~~~~~~ 76 (492)
+++...+-..+.-++...||.++..- ....||+|..... . .+-..|..+ .-+||++.||.+|+.....
T Consensus 795 ~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~ 874 (881)
T KOG0966|consen 795 RRKLSSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCL 874 (881)
T ss_pred cccccHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhccccc
Confidence 44444455556677888899997654 3577999987221 1 222223232 2389999999999999999
Q ss_pred CCCCCcc
Q 011171 77 LPERPYM 83 (492)
Q Consensus 77 l~e~~Y~ 83 (492)
+||+.|.
T Consensus 875 ~~e~~~~ 881 (881)
T KOG0966|consen 875 LPEEDFP 881 (881)
T ss_pred CccccCC
Confidence 9999884
No 150
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.30 E-value=0.58 Score=52.54 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=42.7
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...+.|+||...+..| +.+.|-|.||..|+...+.... ....||+|+..+..
T Consensus 19 ~k~lEc~ic~~~~~~p-~~~kc~~~~l~~~~n~~f~~~~---~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP-SLLKCDHIFLKFCLNKLFESKK---GPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeecc-chhhhhHHHHhhhhhceeeccC---ccccchhhhhhhhh
Confidence 4568999999999999 8899999999999988776632 26789999865443
No 151
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.78 E-value=2.1 Score=44.92 Aligned_cols=35 Identities=26% Similarity=0.770 Sum_probs=25.8
Q ss_pred CCCcccHHhHHHHHHhhccC-------CCccCCCCCCccccc
Q 011171 359 CGHRFCYSCIQNWADHMASV-------RKISTCPLCKASFMS 393 (492)
Q Consensus 359 CgH~FC~~CI~~~l~~~~~~-------~~~~~CP~Cr~~~~~ 393 (492)
|....|.+|+-+|+...+.. ++...||+||+.|-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 34456999999999875422 335689999998764
No 152
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.73 E-value=1.7 Score=43.80 Aligned_cols=45 Identities=24% Similarity=0.750 Sum_probs=33.9
Q ss_pred CcccccccccccccccEeecC----CCcccHHhHHHHHHhhccCCCccCCC
Q 011171 339 GELSCVICWTEFSSTRGVLAC----GHRFCYSCIQNWADHMASVRKISTCP 385 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~C----gH~FC~~CI~~~l~~~~~~~~~~~CP 385 (492)
..+.|.+|.+.+.+. -...| .|.||+.|-.+.++.+...+ ...||
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg~sg-evYCP 315 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQGASG-EVYCP 315 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhcCCC-ceeCC
Confidence 358999999999987 44566 69999999999888754333 34444
No 153
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=68.98 E-value=2.7 Score=47.05 Aligned_cols=105 Identities=16% Similarity=0.317 Sum_probs=50.3
Q ss_pred EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccccccCCCcccccCC--CCCCCC
Q 011171 355 GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILPD--GDSASV 432 (492)
Q Consensus 355 ~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~~~~s~~~~~~~~~--~~~~~~ 432 (492)
+..|-|.-||..|-.+-... ...|-+|-..--...+.+..+- ..-|...|||.+..-+ +...+. ....+.
T Consensus 42 vqVPtGpWfCrKCesqeraa------rvrCeLCP~kdGALKkTDn~GW-AHVVCALYIPEVrFgN-V~TMEPIiLq~VP~ 113 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERAA------RVRCELCPHKDGALKKTDNGGW-AHVVCALYIPEVRFGN-VHTMEPIILQDVPH 113 (900)
T ss_pred EecCCCchhhhhhhhhhhhc------cceeecccCcccceecccCCCc-eEEEEEeeccceeecc-cccccceeeccCch
Confidence 56778899999997553333 5688888654333322221110 0112234455322111 111111 011111
Q ss_pred CCcccccccccCcc--CCcccccccccCCC----CccccccC
Q 011171 433 QPSLLEACIECRSQ--EPQDLLIRCHLCQS----RCIHCYCM 468 (492)
Q Consensus 433 ~~~~~~~C~~C~~~--~~e~~~~~C~~C~~----~~~Hs~C~ 468 (492)
....-.|++|.+. ++..+.--|..|.. +.+|--|.
T Consensus 114 -dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCA 154 (900)
T KOG0956|consen 114 -DRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCA 154 (900)
T ss_pred -hhhcceeeeecccCCccccccccceecccccchhhhhhhHh
Confidence 1123569999864 33335556777665 35555554
No 154
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=68.68 E-value=3.7 Score=42.24 Aligned_cols=41 Identities=22% Similarity=0.618 Sum_probs=27.2
Q ss_pred cccccccCccCCcccccccccCCCCccccccCC----CCCCCCCCccch
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMD----PPLDPWTCIHCK 481 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~----~pl~~w~C~~C~ 481 (492)
...|-.|...........|..|.. .||.+ .|..-..|+-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~----~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKN----VFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccc----eeeccchHHHHhhhhcCCCcC
Confidence 355999954444356778888887 67766 444456777775
No 155
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=67.89 E-value=1.1 Score=31.18 Aligned_cols=31 Identities=32% Similarity=0.860 Sum_probs=16.8
Q ss_pred ccccccccCCCCccccccCCC---CC-CCCCCccch
Q 011171 450 DLLIRCHLCQSRCIHCYCMDP---PL-DPWTCIHCK 481 (492)
Q Consensus 450 ~~~~~C~~C~~~~~Hs~C~~~---pl-~~w~C~~C~ 481 (492)
+.+++|..|.. .+|..|-+. +. ..|+|..|.
T Consensus 2 n~ll~C~~C~v-~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNV-AVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS---EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCC-cCChhhCCcccCCCCCcEECCcCC
Confidence 36889999998 999999983 22 369998773
No 156
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=64.29 E-value=2.3 Score=45.11 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=21.1
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHh
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADH 374 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~ 374 (492)
+-++|.+|...+.-.-+-.-=+-.||..|.+.-++.
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek 336 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK 336 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHHH
Confidence 457888888776632122223455777777665554
No 157
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=64.27 E-value=10 Score=44.14 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCEEeccc------------CCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCC
Q 011171 15 ERFNLIKLISYSGASYVGTM------------SKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 15 er~~i~~li~~~Gg~~~~~l------------t~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~ 78 (492)
.--+++.-|...||.-+-++ ..-.-||++......--+.|-+++.|||++.||.+|+-.+....
T Consensus 1084 ~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1084 TFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred chHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 34567777777777665444 12335666666666667777888999999999999999887654
No 158
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=64.09 E-value=3.3 Score=31.22 Aligned_cols=40 Identities=23% Similarity=0.610 Sum_probs=25.0
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
+.+.||.|.+.|... .+...|....... +....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~--------~L~~H~~~~H~~~----~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES--------SLVEHCEDEHRSE----SKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH--------HHHHHHHhHCcCC----CCCccCCCchhh
Confidence 357899999965543 1334444444333 346799999864
No 159
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.04 E-value=3.8 Score=39.90 Aligned_cols=40 Identities=28% Similarity=0.692 Sum_probs=30.2
Q ss_pred ccccccccccccEeecCCC-cccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 343 CVICWTEFSSTRGVLACGH-RFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 343 C~IC~e~~~~p~~~l~CgH-~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
|-+|.+.-.. +.++||.| .+|..|=. +...||+|+.....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~----------~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDE----------SLRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEecccccc----------cCccCCCCcChhhc
Confidence 9999888776 47899998 48999932 15679999876443
No 160
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=60.02 E-value=0.87 Score=36.58 Aligned_cols=43 Identities=28% Similarity=0.693 Sum_probs=24.2
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
++.||.|...+... . +|-+|..|-..+.. ...||.|.+++...
T Consensus 1 e~~CP~C~~~L~~~-~----~~~~C~~C~~~~~~-------~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ-G----GHYHCEACQKDYKK-------EAFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEEEE-T----TEEEETTT--EEEE-------EEE-TTT-SB-EEE
T ss_pred CCcCCCCCCccEEe-C----CEEECcccccccee-------cccCCCcccHHHHH
Confidence 36899999987533 1 77788889765433 46899999876653
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.27 E-value=7.6 Score=38.57 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=32.2
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHH
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWAD 373 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~ 373 (492)
....+...|++|+..+.+| ++.+=||.||..||.+++.
T Consensus 38 DsiK~FdcCsLtLqPc~dP-vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDP-VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCC-ccCCCCeeeeHHHHHHHHH
Confidence 3445566899999999999 7899999999999988763
No 162
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=57.58 E-value=3.3 Score=47.05 Aligned_cols=42 Identities=33% Similarity=0.813 Sum_probs=33.6
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCCC-----CCCCccch
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPLD-----PWTCIHCK 481 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl~-----~w~C~~C~ 481 (492)
....|.+|.+.. .++.|+.|-. .+|.+|+++|+. .|.|+.|.
T Consensus 46 ~~e~c~ic~~~g---~~l~c~tC~~-s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 46 EQEACRICADGG---ELLWCDTCPA-SFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhhcCCC---cEEEeccccH-HHHHHccCCCCCcCCccceeeeeec
Confidence 346799998874 4666999997 999999997653 49999884
No 163
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.46 E-value=8.3 Score=43.82 Aligned_cols=43 Identities=30% Similarity=0.675 Sum_probs=30.8
Q ss_pred ccccccccccc-cccEeecCCCcccHHhHHHHHHhhccCCCccCCCC-CCc
Q 011171 341 LSCVICWTEFS-STRGVLACGHRFCYSCIQNWADHMASVRKISTCPL-CKA 389 (492)
Q Consensus 341 l~C~IC~e~~~-~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~-Cr~ 389 (492)
+.|.||.-... ...+...|+|..|.+|...|++. .-.||. |+.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~------gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT------GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc------CCcCCCCCCc
Confidence 45666654444 22356689999999999999999 458986 543
No 164
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.55 E-value=8.6 Score=39.07 Aligned_cols=35 Identities=26% Similarity=0.615 Sum_probs=25.2
Q ss_pred CCCcccHHhHHHHHHhhcc-------CCCccCCCCCCccccc
Q 011171 359 CGHRFCYSCIQNWADHMAS-------VRKISTCPLCKASFMS 393 (492)
Q Consensus 359 CgH~FC~~CI~~~l~~~~~-------~~~~~~CP~Cr~~~~~ 393 (492)
|....|.+|+.+|+...++ ..++..||+||+.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4455789999999865331 1346799999998765
No 165
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=51.03 E-value=11 Score=38.82 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=38.3
Q ss_pred CCCCcccccccccccc--cccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 336 STSGELSCVICWTEFS--STRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~--~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
....-+.|||=.+.-. +|.+++.|||..-..-+....+.. .-.+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG---~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNG---VLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcC---cEEeeCCCCCc
Confidence 4566789998777665 455899999999988887776652 12679999954
No 166
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.06 E-value=14 Score=42.47 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=40.2
Q ss_pred Ccccccccccccc--cccEeecCCCc-----ccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 339 GELSCVICWTEFS--STRGVLACGHR-----FCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 339 e~l~C~IC~e~~~--~p~~~l~CgH~-----FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
+...|-||...-. +| .--||..+ .|..|+-+|+.. ++...|-+|..++.....
T Consensus 11 d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~----s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMEC----SGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhc----CCCcceeeecceeeeeee
Confidence 4579999987655 56 44566543 489999999997 568899999998876543
No 167
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.91 E-value=16 Score=36.59 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=36.2
Q ss_pred Ccccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..++|||=.-.+... ..+.+|||.|-..-+.+.- ...|++|.+.+...
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--------as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--------ASVCHVCGAAYQED 160 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--------hccccccCCccccc
Confidence 468999988777643 2456899999988776543 45899999988764
No 168
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.98 E-value=21 Score=29.28 Aligned_cols=49 Identities=22% Similarity=0.514 Sum_probs=20.0
Q ss_pred cccccccccccc-----cccEe--ecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 340 ELSCVICWTEFS-----STRGV--LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~~~-----~p~~~--l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...|.||.+..- ++ ++ -.|+-..|..|.+-=.+. +...||.|+..+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~-FVAC~eC~fPvCr~CyEYErke-----g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEV-FVACHECAFPVCRPCYEYERKE-----GNQVCPQCKTRYKRH 64 (80)
T ss_dssp S-B-SSS--B--B-SSSSB---S-SSS-----HHHHHHHHHT-----S-SB-TTT--B----
T ss_pred CcccccccCccccCCCCCE-EEEEcccCCccchhHHHHHhhc-----CcccccccCCCcccc
Confidence 458999998765 23 22 358888899998654444 478999999876653
No 169
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=45.78 E-value=11 Score=28.77 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=25.2
Q ss_pred ccccccCccC-CcccccccccCCCCccccccCC
Q 011171 438 EACIECRSQE-PQDLLIRCHLCQSRCIHCYCMD 469 (492)
Q Consensus 438 ~~C~~C~~~~-~e~~~~~C~~C~~~~~Hs~C~~ 469 (492)
..|.+|+..- +.+..++|..|++ ++|--|-+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~Cga-pyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGA-PYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCC-cccHHHHh
Confidence 5699999764 2578999999998 89988864
No 170
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=42.52 E-value=16 Score=38.62 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=43.0
Q ss_pred CcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCC--------ChhHHHHHhcCCeE
Q 011171 3 SVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFE--------GEKHSLAKKFRTII 61 (492)
Q Consensus 3 g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~--------~~K~~~A~~~~i~I 61 (492)
++.+..-|-++..+..+++-+..+||.+..-|+..|||+|+.... .+-.-.|++.+.+|
T Consensus 125 ~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~~~d~s~~kk~Dvl~~ak~~nMKi 191 (468)
T COG5067 125 AFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRFAKDNSNYKKLDVLISAKAFNMKI 191 (468)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeeeccchhhcccchHHHhhhhhcccc
Confidence 344555566677777899999999999999999999999997432 22344455555555
No 171
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=3.4 Score=43.47 Aligned_cols=50 Identities=18% Similarity=0.424 Sum_probs=40.5
Q ss_pred ccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 341 LSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 341 l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
-.|+||..-+..- +..+.|||.++..||.+|+.. ...||.|+..+.....
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~------~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT------KRKLPSCRRELPKNGF 249 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH------HHHhHHHHhhhhhhhH
Confidence 4799999887732 346789999999999999998 6689999988776443
No 172
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=9.6 Score=35.53 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCCCcccccccccccc--cccEeecCCCcccH
Q 011171 336 STSGELSCVICWTEFS--STRGVLACGHRFCY 365 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~--~p~~~l~CgH~FC~ 365 (492)
...+.-.|.||++.+. +.+..|||...||.
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3345678999999998 44567899887764
No 173
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=41.49 E-value=20 Score=39.00 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=39.8
Q ss_pred cccccccccCccCCc--ccccccccCCCCccccccCCCC-------------CCCCCCccchhh----hccccccCC
Q 011171 435 SLLEACIECRSQEPQ--DLLIRCHLCQSRCIHCYCMDPP-------------LDPWTCIHCKDL----QMLYNRSNF 492 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e--~~~~~C~~C~~~~~Hs~C~~~p-------------l~~w~C~~C~e~----~~~yCr~~~ 492 (492)
...+.|.||-....+ .-.+-|+.|+. -+|--|-++. ..+|||.-|..- ..-+|.++|
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi-~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~ 192 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGI-NVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRF 192 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCc-eecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcC
Confidence 345789999865333 35678999998 8999998832 247999998643 345666553
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.00 E-value=20 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.598 Sum_probs=31.8
Q ss_pred cccccccccccccc-EeecCC--CcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 341 LSCVICWTEFSSTR-GVLACG--HRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 341 l~C~IC~e~~~~p~-~~l~Cg--H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
..|-.|...+.... -..-|. .+||..|....+.. .||-|+..+...+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~--------~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG--------VCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC--------cCcCCCCccccCC
Confidence 35777777776321 233454 47999999887755 7999998776543
No 175
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.86 E-value=14 Score=35.95 Aligned_cols=45 Identities=20% Similarity=0.487 Sum_probs=36.9
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
-..|.+|......-+..=.|+-.|+..|+..++.. ...||.|+--
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~------~~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR------RDICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc------cCcCCchhcc
Confidence 45899999998876445578888999999999998 7799999643
No 176
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.51 E-value=25 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=23.1
Q ss_pred cccccccccccc--cccE-eecCCCcccHHhHH
Q 011171 340 ELSCVICWTEFS--STRG-VLACGHRFCYSCIQ 369 (492)
Q Consensus 340 ~l~C~IC~e~~~--~p~~-~l~CgH~FC~~CI~ 369 (492)
...|++|.+.|. +.++ -..||-.||..|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 458999999994 5533 34699999999964
No 177
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.69 E-value=22 Score=35.66 Aligned_cols=57 Identities=25% Similarity=0.591 Sum_probs=39.4
Q ss_pred CCCccccccccccccccc---EeecCC-----CcccHHhHHHHHHhhc--cCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSSTR---GVLACG-----HRFCYSCIQNWADHMA--SVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~---~~l~Cg-----H~FC~~CI~~~l~~~~--~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+-.|=||...=.+-. -+-||. |-.|..|+..|+..++ +......||.|+.+...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 344567899998766431 134663 5579999999998854 22345689999987654
No 178
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=37.44 E-value=73 Score=23.86 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=30.7
Q ss_pred EEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEe
Q 011171 5 VATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVC 43 (492)
Q Consensus 5 ~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~ 43 (492)
-|+|+||.......+.......|-...-.++.....+..
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~~~~~l 41 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFASFGEIVDIYVPESTNWMYL 41 (53)
T ss_pred EEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCCcEEEE
Confidence 489999999999888888889999988888744433333
No 179
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=37.40 E-value=11 Score=37.96 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=13.0
Q ss_pred CCcchhhhhhhhcccccccc
Q 011171 239 PSTKGRRLAKCIGRNGLESM 258 (492)
Q Consensus 239 ~~~~~~~~~~~~~r~~le~~ 258 (492)
.++.+.-|+..+.=.+||++
T Consensus 111 ~~e~~~~leAll~seglekk 130 (336)
T KOG1244|consen 111 ASEHGACLEALLRSEGLEKK 130 (336)
T ss_pred cccccHHHHHHHhccccccc
Confidence 44556666667777777755
No 180
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=36.49 E-value=19 Score=30.44 Aligned_cols=37 Identities=24% Similarity=0.764 Sum_probs=28.8
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
.-.|-||..-..++ ||.||..|-.. ...|.+|++.+.
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~CAYk----------kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTCAYK----------KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC------CCccChhhhcc----------cCcccccCCeec
Confidence 34799999887776 78899999532 568999998763
No 181
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=25 Score=28.42 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=30.2
Q ss_pred cccccccccccc-cEeecC--CCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 342 SCVICWTEFSST-RGVLAC--GHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 342 ~C~IC~e~~~~p-~~~l~C--gH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
.|--|-..+... .-.+-| .|+||..|.+..+.. .||-|+..+...+.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g--------~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLHG--------LCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcC--------cCCCCCchhhcCcC
Confidence 466666665421 112334 478999998876654 79999988766443
No 182
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=22 Score=37.86 Aligned_cols=34 Identities=32% Similarity=0.782 Sum_probs=25.5
Q ss_pred cccccccccccc-----cccEeecCCCcccHHhHHHHHHh
Q 011171 340 ELSCVICWTEFS-----STRGVLACGHRFCYSCIQNWADH 374 (492)
Q Consensus 340 ~l~C~IC~e~~~-----~p~~~l~CgH~FC~~CI~~~l~~ 374 (492)
-..||.|...+. +. ++=.|||-||+.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnh-m~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNH-MTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcce-EEeeccccchhhcCcchhhC
Confidence 357888887765 23 23349999999999998876
No 183
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=31.12 E-value=54 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=22.1
Q ss_pred CCcccHHhHHHHHHhhc---cCCCccCCCCCCcc
Q 011171 360 GHRFCYSCIQNWADHMA---SVRKISTCPLCKAS 390 (492)
Q Consensus 360 gH~FC~~CI~~~l~~~~---~~~~~~~CP~Cr~~ 390 (492)
.-.||..||..+..... .....+.||.|+.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 66799999988765421 12347899999864
No 184
>PF12773 DZR: Double zinc ribbon
Probab=30.17 E-value=48 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=11.9
Q ss_pred ccccccCccCC--cccccccccCCC
Q 011171 438 EACIECRSQEP--QDLLIRCHLCQS 460 (492)
Q Consensus 438 ~~C~~C~~~~~--e~~~~~C~~C~~ 460 (492)
..|..|+.... ....++|..|+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~ 37 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGA 37 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcC
Confidence 44666655433 334455666655
No 185
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=48 Score=29.75 Aligned_cols=24 Identities=38% Similarity=0.898 Sum_probs=17.1
Q ss_pred CcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 361 HRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 361 H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
-.||..|=..- ...||.|..++..
T Consensus 28 eafcskcgeat---------i~qcp~csasirg 51 (160)
T COG4306 28 EAFCSKCGEAT---------ITQCPICSASIRG 51 (160)
T ss_pred HHHHhhhchHH---------HhcCCccCCcccc
Confidence 35898886543 3459999887664
No 186
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.55 E-value=51 Score=29.05 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=29.7
Q ss_pred cccccccccccccc-------------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 341 LSCVICWTEFSSTR-------------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 341 l~C~IC~e~~~~p~-------------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
..|--|+..|..+. .-..|.+.||.+|=.=+-+. ...||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~------Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES------LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh------ccCCcCCC
Confidence 35888988886531 13468999999995444444 67899985
No 187
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=27.18 E-value=39 Score=38.41 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=41.2
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.--+.|+|+.....-|..-..|.|.-|++=. |+.........+.||+|.+.+...
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e 358 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFE 358 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCcccccc
Confidence 3445568999999988877667788887776543 444444556789999998866543
No 188
>PF14353 CpXC: CpXC protein
Probab=27.15 E-value=49 Score=29.20 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=28.0
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
+++||.|...|.-. +-..-.-..-..=....+.. .--..+||.|+..+.....
T Consensus 1 ~itCP~C~~~~~~~-v~~~I~~~~~p~l~e~il~g---~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-VWTSINADEDPELKEKILDG---SLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred CcCCCCCCCeeEEE-EEeEEcCcCCHHHHHHHHcC---CcCEEECCCCCCceecCCC
Confidence 36899999988754 11111111112222333322 1125689999998876433
No 189
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=99 Score=31.23 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=28.6
Q ss_pred CCCCCccccccccc-ccc---cccEeecCCCcccHHhHHHHHH
Q 011171 335 SSTSGELSCVICWT-EFS---STRGVLACGHRFCYSCIQNWAD 373 (492)
Q Consensus 335 ~~~~e~l~C~IC~e-~~~---~p~~~l~CgH~FC~~CI~~~l~ 373 (492)
+.......++++.. .+. .+.+..+|+|.||..|..-|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 44556678888887 333 2225678999999999999887
No 190
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.52 E-value=43 Score=22.57 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=15.9
Q ss_pred ccccCCCCccccccCCCCCCCCCCccchhhhcc
Q 011171 454 RCHLCQSRCIHCYCMDPPLDPWTCIHCKDLQML 486 (492)
Q Consensus 454 ~C~~C~~~~~Hs~C~~~pl~~w~C~~C~e~~~~ 486 (492)
.|..|+- .| ++...+|.||.|..-...
T Consensus 3 ~C~~CGy----~y--~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 3 VCPVCGY----IY--DGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred ECCCCCC----EE--CCCcCCCcCcCCCCcHHH
Confidence 4666664 22 133467999999765443
No 191
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.26 E-value=40 Score=26.85 Aligned_cols=14 Identities=29% Similarity=1.030 Sum_probs=10.3
Q ss_pred cccHHhHHHHHHhh
Q 011171 362 RFCYSCIQNWADHM 375 (492)
Q Consensus 362 ~FC~~CI~~~l~~~ 375 (492)
.||..|+.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999873
No 192
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=26.20 E-value=32 Score=33.88 Aligned_cols=14 Identities=21% Similarity=0.743 Sum_probs=10.5
Q ss_pred cccccccccccccc
Q 011171 340 ELSCVICWTEFSST 353 (492)
Q Consensus 340 ~l~C~IC~e~~~~p 353 (492)
.+.|+||+..|..|
T Consensus 260 GfvCsVCLsvfc~p 273 (296)
T COG5242 260 GFVCSVCLSVFCRP 273 (296)
T ss_pred eeehhhhheeecCC
Confidence 57788888877666
No 193
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.13 E-value=24 Score=35.82 Aligned_cols=18 Identities=33% Similarity=0.750 Sum_probs=11.0
Q ss_pred cccccccCCCCccccccCC
Q 011171 451 LLIRCHLCQSRCIHCYCMD 469 (492)
Q Consensus 451 ~~~~C~~C~~~~~Hs~C~~ 469 (492)
.++.|..|.. .+|.+|++
T Consensus 278 S~I~C~~C~~-~~HP~Ci~ 295 (381)
T KOG1512|consen 278 SWIVCKPCAT-RPHPYCVA 295 (381)
T ss_pred cceeeccccc-CCCCcchh
Confidence 4555666664 66666666
No 194
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.78 E-value=24 Score=23.16 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=11.2
Q ss_pred cccccCccCCcccccccccCCCCcccccc
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYC 467 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C 467 (492)
.|..|+..........|..|+- ..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf-~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF-DLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT------HHH
T ss_pred cCCcCCCcCCCCceEECccCCC-ccChhc
Confidence 4888987755447888999995 777665
No 195
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=25.22 E-value=20 Score=28.48 Aligned_cols=21 Identities=29% Similarity=0.706 Sum_probs=18.6
Q ss_pred ccccccccCCCCccccccCCCC
Q 011171 450 DLLIRCHLCQSRCIHCYCMDPP 471 (492)
Q Consensus 450 ~~~~~C~~C~~~~~Hs~C~~~p 471 (492)
.+++.|..|++ ++|.-|.+|.
T Consensus 41 kAMi~Cq~CGA-FCHDDCIgps 61 (69)
T PF13922_consen 41 KAMIMCQGCGA-FCHDDCIGPS 61 (69)
T ss_pred HHHHHHhhccc-hhccccccHH
Confidence 49999999998 9999999765
No 196
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.96 E-value=44 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.930 Sum_probs=13.3
Q ss_pred cCCCcccHHhHHHHHHhhccCCCccCCCCCC
Q 011171 358 ACGHRFCYSCIQNWADHMASVRKISTCPLCK 388 (492)
Q Consensus 358 ~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr 388 (492)
.|++.||.+|= .++.. ....||-|-
T Consensus 26 ~C~~~FC~dCD-~fiHE-----~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD-VFIHE-----TLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH-HTTTT-----TS-SSSTT-
T ss_pred CCCCccccCcC-hhhhc-----cccCCcCCC
Confidence 58999999993 22222 267899883
No 197
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=30 Score=35.46 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=41.1
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...+...|-||...+.-|...-.|.|.||..|...|... ...||.|+.....
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~------~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM------GNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeeeEEecccccCceeeeeecCCchhhhh------hhccchhhcCcCc
Confidence 334567899999999987444569999999999999988 6789988765443
No 198
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.65 E-value=20 Score=23.13 Aligned_cols=11 Identities=36% Similarity=0.908 Sum_probs=5.3
Q ss_pred ccCCCCCCccc
Q 011171 381 ISTCPLCKASF 391 (492)
Q Consensus 381 ~~~CP~Cr~~~ 391 (492)
...||.|+..|
T Consensus 14 ~~~Cp~CG~~F 24 (26)
T PF10571_consen 14 AKFCPHCGYDF 24 (26)
T ss_pred cCcCCCCCCCC
Confidence 34455555443
No 199
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.52 E-value=66 Score=29.94 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=19.7
Q ss_pred CCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 360 GHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 360 gH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.||..|=.+-+.. ||.|..++...
T Consensus 27 ~~~fC~kCG~~tI~~---------Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTITS---------CPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHHH---------CcCCCCCCCCc
Confidence 467999997766554 99999876653
No 200
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.81 E-value=18 Score=36.60 Aligned_cols=45 Identities=36% Similarity=0.639 Sum_probs=35.6
Q ss_pred cccccccccccc-c-----ccEeec--------CCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 340 ELSCVICWTEFS-S-----TRGVLA--------CGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 340 ~l~C~IC~e~~~-~-----p~~~l~--------CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
...|.||...|. + | .++. |||..|..|+...+... ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p-~vl~~~~~~~~~c~htlc~~c~~~~l~~~-----~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAP-LVLSLSRLKEKIEGHTLCKECIDTILLQA-----GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccch-hHHHHHHHHHHHHHHHHHhcchHHHHHHh-----hhcCCcccce
Confidence 357999998887 2 4 3455 99999999999988873 3799999874
No 201
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.77 E-value=49 Score=28.64 Aligned_cols=41 Identities=24% Similarity=0.775 Sum_probs=25.6
Q ss_pred ccccccCccCCccccccc------ccC---CCCccccccCC-------------CCCCCCCCccchhh
Q 011171 438 EACIECRSQEPQDLLIRC------HLC---QSRCIHCYCMD-------------PPLDPWTCIHCKDL 483 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C------~~C---~~~~~Hs~C~~-------------~pl~~w~C~~C~e~ 483 (492)
..|..|..... +....| ..| .. .||-+ .....|.||.|+.+
T Consensus 8 ~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~----~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTL-DFKTICTGHWKNSSCRGCRG----KFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCchhhcCCCC-CCceEcCCCCCCCCCccCcc----eehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 55888876544 334556 566 54 45554 12356999999875
No 202
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=45 Score=38.13 Aligned_cols=56 Identities=23% Similarity=0.577 Sum_probs=38.8
Q ss_pred Ccccccccccccccc---------cEeecCCCcc--------------------cHHhHHHHHHhhcc--CCCccCCCCC
Q 011171 339 GELSCVICWTEFSST---------RGVLACGHRF--------------------CYSCIQNWADHMAS--VRKISTCPLC 387 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---------~~~l~CgH~F--------------------C~~CI~~~l~~~~~--~~~~~~CP~C 387 (492)
+-.+|+-|++++.+| +..+.||.+| |..|..++-..... ......||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 446899999988876 2356788888 99999877543210 1225689999
Q ss_pred Ccccccc
Q 011171 388 KASFMSI 394 (492)
Q Consensus 388 r~~~~~~ 394 (492)
+-.+...
T Consensus 180 GP~~~l~ 186 (750)
T COG0068 180 GPHLFLV 186 (750)
T ss_pred CCCeEEE
Confidence 8766554
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.98 E-value=57 Score=32.31 Aligned_cols=26 Identities=42% Similarity=0.710 Sum_probs=20.4
Q ss_pred ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 363 FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 363 FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
-|..|-+..-++ ...||+|++.....
T Consensus 196 ~C~sC~qqIHRN------APiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHRN------APICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhcC------CCCCcccccccccC
Confidence 588998887777 78999999865543
No 204
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.63 E-value=17 Score=36.93 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=21.1
Q ss_pred cccccccccccccccEeec----CCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 340 ELSCVICWTEFSSTRGVLA----CGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~----CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
.-.||||.....-.++.-. =.+-+|.-|-..|--. ...||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~------R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV------RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--------TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec------CCCCcCCCCC
Confidence 3689999987664311111 2356799999999766 6689999764
Done!