Query 011171
Match_columns 492
No_of_seqs 523 out of 3417
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l46_A Protein ECT2; alternati 99.8 4.6E-22 1.6E-26 172.6 4.4 85 1-85 22-106 (112)
2 2cou_A ECT2 protein; BRCT doma 99.8 1.4E-21 4.8E-26 168.8 3.8 85 1-85 13-97 (109)
3 2d8m_A DNA-repair protein XRCC 99.8 4.8E-20 1.6E-24 163.8 11.0 88 1-88 23-110 (129)
4 3l3e_A DNA topoisomerase 2-bin 99.8 4.1E-20 1.4E-24 158.7 9.7 86 1-86 16-104 (107)
5 4id3_A DNA repair protein REV1 99.8 1.3E-18 4.3E-23 144.5 8.4 82 1-84 8-91 (92)
6 3pa6_A Microcephalin; BRCT dom 99.7 2.5E-18 8.4E-23 148.0 9.0 88 1-88 8-99 (107)
7 2ebw_A DNA repair protein REV1 99.7 2.6E-18 8.9E-23 144.5 8.0 83 1-85 13-96 (97)
8 3olc_X DNA topoisomerase 2-bin 99.7 1.9E-17 6.6E-22 166.8 9.6 88 1-88 200-288 (298)
9 3ef1_A RNA polymerase II subun 99.6 1.3E-16 4.5E-21 167.6 7.8 84 1-84 353-441 (442)
10 3ef0_A RNA polymerase II subun 99.6 2.5E-16 8.4E-21 163.1 8.4 84 1-84 283-371 (372)
11 1l0b_A BRCA1; TANDEM-BRCT, thr 99.6 2.3E-15 7.9E-20 145.0 9.5 85 1-85 5-95 (229)
12 3pc6_A DNA repair protein XRCC 99.6 3.8E-15 1.3E-19 127.3 9.6 85 1-85 8-95 (104)
13 1wf6_A Similar to S.pombe -RAD 99.6 3.7E-15 1.3E-19 132.7 9.9 83 1-84 41-126 (132)
14 2nte_A BARD-1, BRCA1-associate 99.6 5.4E-15 1.9E-19 141.0 9.7 84 2-85 1-87 (210)
15 1t15_A Breast cancer type 1 su 99.6 5.4E-15 1.8E-19 140.6 8.8 84 2-85 3-92 (214)
16 3sqd_A PAX-interacting protein 99.5 1.3E-14 4.3E-19 140.0 7.4 84 1-85 14-98 (219)
17 3olc_X DNA topoisomerase 2-bin 99.5 3.3E-14 1.1E-18 143.2 8.9 82 1-82 106-187 (298)
18 3al2_A DNA topoisomerase 2-bin 99.5 1E-13 3.5E-18 135.1 9.7 85 2-86 8-95 (235)
19 2etx_A Mediator of DNA damage 99.4 1.4E-13 4.9E-18 131.4 8.6 81 1-85 10-91 (209)
20 3u3z_A Microcephalin; DNA repa 99.4 1.8E-13 6.1E-18 130.0 9.1 83 4-86 12-96 (199)
21 2vxb_A DNA repair protein RHP9 99.4 8.8E-13 3E-17 128.9 8.5 88 1-88 3-120 (241)
22 1kzy_C Tumor suppressor P53-bi 99.3 1.2E-12 4.1E-17 129.2 8.6 88 1-88 16-139 (259)
23 3ii6_X DNA ligase 4; XRCC4, NH 99.3 2.4E-12 8.1E-17 127.3 9.2 83 1-84 11-95 (263)
24 1l7b_A DNA ligase; BRCT, autos 99.3 3.6E-12 1.2E-16 106.5 7.0 73 1-73 8-80 (92)
25 3l41_A BRCT-containing protein 99.3 1.7E-12 5.7E-17 125.3 4.9 80 2-85 7-87 (220)
26 2k6g_A Replication factor C su 99.2 5.5E-11 1.9E-15 102.3 9.0 74 1-74 33-108 (109)
27 2yur_A Retinoblastoma-binding 99.2 2.2E-11 7.6E-16 97.1 5.2 55 335-394 10-65 (74)
28 2cok_A Poly [ADP-ribose] polym 99.2 9.3E-11 3.2E-15 101.5 9.0 81 1-81 11-104 (113)
29 2djb_A Polycomb group ring fin 99.1 3.2E-11 1.1E-15 95.5 5.6 53 335-394 10-63 (72)
30 2ebu_A Replication factor C su 99.1 9.6E-11 3.3E-15 101.2 8.8 73 1-73 23-97 (112)
31 3ztg_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 99.1 5.6 54 335-393 8-62 (92)
32 2ecw_A Tripartite motif-contai 99.1 6E-11 2.1E-15 96.0 5.9 58 335-393 14-71 (85)
33 1t1h_A Gspef-atpub14, armadill 99.1 4E-11 1.4E-15 96.2 4.6 53 336-394 4-56 (78)
34 2csy_A Zinc finger protein 183 99.1 7E-11 2.4E-15 95.6 5.3 49 337-392 12-60 (81)
35 4ayc_A E3 ubiquitin-protein li 99.1 2E-11 7E-16 109.0 2.2 50 338-394 51-100 (138)
36 2ecy_A TNF receptor-associated 99.1 5.8E-11 2E-15 92.3 4.5 53 335-393 10-62 (66)
37 2d8t_A Dactylidin, ring finger 99.1 4E-11 1.4E-15 94.7 3.3 50 337-393 12-61 (71)
38 3ii6_X DNA ligase 4; XRCC4, NH 99.1 1.5E-10 5.2E-15 114.4 8.0 84 1-84 165-263 (263)
39 2ep8_A Pescadillo homolog 1; A 99.1 1.9E-10 6.6E-15 97.5 7.4 77 1-83 13-100 (100)
40 2ysl_A Tripartite motif-contai 99.1 8.7E-11 3E-15 92.8 4.6 55 335-393 15-69 (73)
41 2ea6_A Ring finger protein 4; 99.1 8.3E-11 2.8E-15 91.6 4.4 52 336-393 11-68 (69)
42 2ecv_A Tripartite motif-contai 99.1 7.9E-11 2.7E-15 95.3 4.3 58 335-393 14-71 (85)
43 2jw5_A DNA polymerase lambda; 99.1 1.1E-10 3.8E-15 99.9 5.5 85 1-85 12-104 (106)
44 3ng2_A RNF4, snurf, ring finge 99.0 8.1E-11 2.8E-15 92.3 3.7 51 337-393 7-63 (71)
45 2ct2_A Tripartite motif protei 99.0 1.5E-10 5.1E-15 94.6 5.3 55 335-393 10-68 (88)
46 3lrq_A E3 ubiquitin-protein li 99.0 8.9E-11 3E-15 99.1 3.7 52 336-393 18-70 (100)
47 2kr4_A Ubiquitin conjugation f 99.0 1.7E-10 6E-15 94.7 5.1 52 336-394 10-61 (85)
48 2ysj_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 88.5 4.8 49 335-387 15-63 (63)
49 3fl2_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 101.9 3.8 50 338-393 50-99 (124)
50 2egp_A Tripartite motif-contai 99.0 6E-11 2E-15 95.1 1.6 58 335-393 7-65 (79)
51 1chc_A Equine herpes virus-1 r 99.0 1.4E-10 4.8E-15 90.4 3.5 50 339-394 4-53 (68)
52 4ap4_A E3 ubiquitin ligase RNF 99.0 3.2E-11 1.1E-15 105.6 -0.4 50 338-393 5-60 (133)
53 1x4j_A Ring finger protein 38; 99.0 3.3E-10 1.1E-14 90.2 4.6 51 337-393 20-72 (75)
54 2xeu_A Ring finger protein 4; 99.0 2.2E-10 7.4E-15 87.8 3.4 49 339-393 2-56 (64)
55 2ckl_A Polycomb group ring fin 99.0 2E-10 6.7E-15 98.1 3.4 51 337-394 12-63 (108)
56 1g25_A CDK-activating kinase a 99.0 3E-10 1E-14 87.9 4.2 50 339-393 2-55 (65)
57 1iym_A EL5; ring-H2 finger, ub 99.0 2.2E-10 7.6E-15 85.5 3.3 48 338-392 3-54 (55)
58 2kiz_A E3 ubiquitin-protein li 99.0 5E-10 1.7E-14 87.5 5.4 51 338-394 12-64 (69)
59 2ecm_A Ring finger and CHY zin 99.0 2.8E-10 9.6E-15 84.8 3.7 48 339-392 4-54 (55)
60 2ep4_A Ring finger protein 24; 99.0 3.7E-10 1.3E-14 89.5 4.5 54 336-395 11-66 (74)
61 3l11_A E3 ubiquitin-protein li 99.0 8.6E-11 2.9E-15 101.4 0.7 53 335-393 10-62 (115)
62 2ect_A Ring finger protein 126 99.0 2.7E-10 9.2E-15 91.3 3.5 53 336-394 11-65 (78)
63 2y43_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 95.4 3.5 49 338-393 20-69 (99)
64 1wgm_A Ubiquitin conjugation f 98.9 8E-10 2.7E-14 93.2 6.0 52 336-394 18-70 (98)
65 2kre_A Ubiquitin conjugation f 98.9 3.5E-10 1.2E-14 95.8 3.6 51 336-393 25-75 (100)
66 2l0b_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 93.2 3.8 51 337-393 37-89 (91)
67 2ecj_A Tripartite motif-contai 98.9 4.2E-10 1.4E-14 84.7 3.2 49 335-387 10-58 (58)
68 3hct_A TNF receptor-associated 98.9 7E-10 2.4E-14 96.3 5.0 54 335-394 13-66 (118)
69 1z6u_A NP95-like ring finger p 98.9 5.5E-10 1.9E-14 101.4 3.8 51 338-394 76-126 (150)
70 3u3z_A Microcephalin; DNA repa 98.9 7.4E-10 2.5E-14 105.0 4.9 77 1-84 120-197 (199)
71 1z56_C DNA ligase IV; DNA repa 98.9 1.1E-10 3.8E-15 114.8 -0.9 83 1-84 6-100 (264)
72 1e4u_A Transcriptional repress 98.9 9.1E-10 3.1E-14 89.1 4.2 55 335-394 6-63 (78)
73 2yu4_A E3 SUMO-protein ligase 98.9 1.9E-09 6.4E-14 90.1 6.0 53 337-390 4-59 (94)
74 1z56_C DNA ligase IV; DNA repa 98.9 6.7E-10 2.3E-14 109.3 3.7 84 1-84 161-261 (264)
75 2ckl_B Ubiquitin ligase protei 98.9 1E-09 3.4E-14 100.7 4.0 55 336-395 50-104 (165)
76 1rmd_A RAG1; V(D)J recombinati 98.9 6.4E-10 2.2E-14 96.0 2.5 51 338-394 21-71 (116)
77 1l0b_A BRCA1; TANDEM-BRCT, thr 98.9 3.2E-09 1.1E-13 101.8 7.4 85 1-85 118-213 (229)
78 2ecn_A Ring finger protein 141 98.9 4E-10 1.4E-14 88.4 0.9 51 336-394 11-61 (70)
79 2coe_A Deoxynucleotidyltransfe 98.8 1.1E-08 3.7E-13 89.3 9.9 84 1-84 21-113 (120)
80 1jm7_A BRCA1, breast cancer ty 98.8 8.7E-10 3E-14 94.2 2.6 53 338-394 19-71 (112)
81 1v87_A Deltex protein 2; ring- 98.8 1.5E-09 5E-14 93.3 3.5 55 339-394 24-95 (114)
82 1t15_A Breast cancer type 1 su 98.8 2.8E-09 9.5E-14 100.9 5.6 84 1-84 116-210 (214)
83 2ecl_A Ring-box protein 2; RNF 98.8 1.9E-09 6.6E-14 87.5 3.8 49 339-393 14-76 (81)
84 3knv_A TNF receptor-associated 98.8 9.3E-10 3.2E-14 98.9 1.4 53 335-393 26-78 (141)
85 1bor_A Transcription factor PM 98.8 1.2E-09 4E-14 82.5 1.3 47 338-394 4-50 (56)
86 2c2l_A CHIP, carboxy terminus 98.8 4.4E-09 1.5E-13 103.2 5.0 52 337-394 205-256 (281)
87 3dpl_R Ring-box protein 1; ubi 98.7 5.4E-09 1.8E-13 89.5 4.3 49 339-393 36-101 (106)
88 3pc7_A DNA ligase 3; DNA repai 98.7 1.4E-08 4.7E-13 83.8 6.1 69 1-79 17-87 (88)
89 1jm7_B BARD1, BRCA1-associated 98.7 2.1E-09 7.1E-14 93.1 0.9 48 337-393 19-67 (117)
90 3hcs_A TNF receptor-associated 98.7 7.5E-09 2.6E-13 95.2 4.6 54 335-394 13-66 (170)
91 2f42_A STIP1 homology and U-bo 98.7 1.1E-08 3.6E-13 95.5 5.4 54 335-394 101-154 (179)
92 4ic3_A E3 ubiquitin-protein li 98.6 7.3E-09 2.5E-13 82.6 1.9 46 338-394 22-68 (74)
93 2nte_A BARD-1, BRCA1-associate 98.6 2.7E-08 9.3E-13 94.4 4.8 79 1-80 105-209 (210)
94 2vje_A E3 ubiquitin-protein li 98.6 1.8E-08 6.1E-13 78.2 2.7 49 338-393 6-57 (64)
95 2etx_A Mediator of DNA damage 98.6 1.1E-07 3.6E-12 90.6 7.9 85 1-86 116-203 (209)
96 4ap4_A E3 ubiquitin ligase RNF 98.5 3.1E-08 1.1E-12 86.4 3.5 51 338-394 70-126 (133)
97 3htk_C E3 SUMO-protein ligase 98.5 2.9E-08 1E-12 97.2 3.5 55 336-394 177-233 (267)
98 2d8s_A Cellular modulator of i 98.5 6.4E-08 2.2E-12 78.6 4.7 53 338-395 13-72 (80)
99 2y1n_A E3 ubiquitin-protein li 98.5 4.5E-08 1.5E-12 101.3 4.5 50 339-394 331-380 (389)
100 2dun_A POL MU, DNA polymerase 98.5 3E-07 1E-11 81.0 9.1 83 1-83 11-105 (133)
101 4a0k_B E3 ubiquitin-protein li 98.5 1.4E-08 4.8E-13 88.3 0.2 49 339-393 47-112 (117)
102 2vje_B MDM4 protein; proto-onc 98.5 4.9E-08 1.7E-12 75.4 2.7 48 339-393 6-56 (63)
103 2ecg_A Baculoviral IAP repeat- 98.5 5.1E-08 1.8E-12 77.7 2.8 46 338-394 23-69 (75)
104 1kzy_C Tumor suppressor P53-bi 98.4 3.9E-07 1.3E-11 89.7 6.5 82 1-82 156-249 (259)
105 1wim_A KIAA0161 protein; ring 98.3 2.1E-07 7.1E-12 77.3 2.8 52 339-390 4-61 (94)
106 2ea5_A Cell growth regulator w 98.3 4.2E-07 1.4E-11 71.3 3.6 46 338-394 13-59 (68)
107 2yho_A E3 ubiquitin-protein li 98.2 2E-07 7E-12 75.2 1.0 46 338-394 16-62 (79)
108 2bay_A PRE-mRNA splicing facto 98.2 6.4E-07 2.2E-11 68.8 3.4 47 340-393 3-50 (61)
109 2ct0_A Non-SMC element 1 homol 98.1 1.6E-06 5.4E-11 69.3 3.5 51 339-393 14-64 (74)
110 3t6p_A Baculoviral IAP repeat- 98.1 7E-07 2.4E-11 91.4 1.4 46 338-394 293-339 (345)
111 1dgs_A DNA ligase; AMP complex 98.1 4.8E-07 1.6E-11 99.6 0.0 74 1-74 588-661 (667)
112 2owo_A DNA ligase; protein-DNA 98.0 5.7E-07 2E-11 99.1 0.0 72 1-72 598-670 (671)
113 3sqd_A PAX-interacting protein 98.0 1.5E-05 5.2E-10 76.4 8.7 83 1-84 123-218 (219)
114 2kwj_A Zinc finger protein DPF 97.9 4.2E-06 1.4E-10 72.3 2.8 43 440-483 61-108 (114)
115 1vyx_A ORF K3, K3RING; zinc-bi 97.9 9.5E-06 3.3E-10 62.0 4.1 51 338-393 4-59 (60)
116 2ysm_A Myeloid/lymphoid or mix 97.9 5.9E-06 2E-10 70.8 3.2 92 338-482 5-103 (111)
117 3vk6_A E3 ubiquitin-protein li 97.8 1.7E-05 5.8E-10 66.3 3.9 50 342-396 3-52 (101)
118 2vxb_A DNA repair protein RHP9 97.7 3.6E-05 1.2E-09 74.8 6.2 74 1-78 152-240 (241)
119 3v43_A Histone acetyltransfera 97.7 6.8E-05 2.3E-09 64.4 7.0 92 339-482 4-111 (112)
120 4gns_A Chitin biosynthesis pro 97.5 0.00038 1.3E-08 63.6 9.5 90 1-90 162-259 (290)
121 3al2_A DNA topoisomerase 2-bin 97.5 0.00012 4.2E-09 70.8 6.1 83 1-84 136-228 (235)
122 2e6r_A Jumonji/ARID domain-con 97.5 7.3E-05 2.5E-09 62.1 3.7 46 437-483 16-66 (92)
123 2yt5_A Metal-response element- 97.4 6.8E-05 2.3E-09 58.1 3.2 47 436-483 5-61 (66)
124 1f62_A Transcription factor WS 97.4 5.3E-05 1.8E-09 55.7 2.0 43 439-482 2-49 (51)
125 3k1l_B Fancl; UBC, ring, RWD, 97.4 5.8E-05 2E-09 76.4 2.8 55 339-393 307-373 (381)
126 1wev_A Riken cDNA 1110020M19; 97.4 7.2E-05 2.5E-09 61.6 2.9 47 437-484 16-73 (88)
127 3t7k_A RTT107, regulator of TY 97.4 0.00033 1.1E-08 67.8 7.7 83 3-85 22-119 (256)
128 2ku3_A Bromodomain-containing 97.4 6.6E-05 2.2E-09 59.4 2.1 48 435-483 14-66 (71)
129 2e6s_A E3 ubiquitin-protein li 97.3 0.00012 4E-09 58.8 3.1 42 439-481 28-75 (77)
130 3asl_A E3 ubiquitin-protein li 97.2 0.00016 5.4E-09 56.9 3.2 42 439-481 20-67 (70)
131 3shb_A E3 ubiquitin-protein li 97.2 0.00016 5.4E-09 58.1 3.0 42 439-481 28-75 (77)
132 2l43_A N-teminal domain from h 97.2 0.00015 5.1E-09 59.7 2.4 47 436-483 24-75 (88)
133 1mm2_A MI2-beta; PHD, zinc fin 97.1 0.00042 1.4E-08 53.0 4.5 44 436-483 8-56 (61)
134 2k16_A Transcription initiatio 97.1 0.00018 6E-09 57.2 2.4 48 435-483 16-68 (75)
135 2lri_C Autoimmune regulator; Z 97.1 0.00029 9.8E-09 54.9 3.2 42 437-482 12-58 (66)
136 2yql_A PHD finger protein 21A; 97.0 0.00032 1.1E-08 52.6 3.0 43 436-482 8-55 (56)
137 1xwh_A Autoimmune regulator; P 97.0 0.0004 1.4E-08 53.9 3.0 44 436-483 7-55 (66)
138 1fp0_A KAP-1 corepressor; PHD 96.9 0.00071 2.4E-08 55.5 4.4 45 435-483 23-72 (88)
139 3ask_A E3 ubiquitin-protein li 96.9 0.00037 1.3E-08 66.8 3.0 43 438-481 175-223 (226)
140 3huf_A DNA repair and telomere 96.9 0.0011 3.7E-08 66.5 6.4 67 4-73 116-187 (325)
141 2puy_A PHD finger protein 21A; 96.9 0.00052 1.8E-08 52.2 2.9 43 437-483 5-52 (60)
142 2l5u_A Chromodomain-helicase-D 96.8 0.00074 2.5E-08 51.6 3.5 43 436-482 10-57 (61)
143 2l42_A DNA-binding protein RAP 96.8 0.0012 4.1E-08 54.8 4.4 77 1-85 12-95 (106)
144 2jmi_A Protein YNG1, ING1 homo 96.5 0.0015 5.1E-08 53.9 3.2 47 435-483 24-76 (90)
145 2lv9_A Histone-lysine N-methyl 96.4 0.0019 6.5E-08 54.0 3.7 43 437-481 28-74 (98)
146 1wen_A Inhibitor of growth fam 96.3 0.0037 1.3E-07 49.2 4.6 47 435-483 14-65 (71)
147 1weu_A Inhibitor of growth fam 96.3 0.004 1.4E-07 51.4 5.0 48 434-483 33-85 (91)
148 2vnf_A ING 4, P29ING4, inhibit 96.3 0.0014 4.8E-08 49.9 1.8 46 435-482 8-58 (60)
149 2g6q_A Inhibitor of growth pro 96.1 0.0021 7.3E-08 49.2 1.9 47 435-483 9-60 (62)
150 3c6w_A P28ING5, inhibitor of g 96.0 0.0023 7.9E-08 48.5 1.8 46 435-482 7-57 (59)
151 3nw0_A Non-structural maintena 95.7 0.0055 1.9E-07 59.3 3.6 49 340-392 180-228 (238)
152 3o70_A PHD finger protein 13; 95.3 0.0097 3.3E-07 46.4 3.0 46 435-482 17-66 (68)
153 1x4i_A Inhibitor of growth pro 95.2 0.008 2.7E-07 47.1 2.2 46 436-483 5-55 (70)
154 2ysm_A Myeloid/lymphoid or mix 95.0 0.018 6.2E-07 48.8 4.0 45 436-481 6-55 (111)
155 3qbz_A DDK kinase regulatory s 94.8 0.048 1.6E-06 49.1 6.4 65 3-67 62-146 (160)
156 4gne_A Histone-lysine N-methyl 94.8 0.019 6.4E-07 48.8 3.4 43 435-481 13-60 (107)
157 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.012 4.2E-07 48.6 1.6 32 339-371 2-36 (101)
158 1we9_A PHD finger family prote 94.4 0.02 6.8E-07 43.7 2.6 47 436-483 5-58 (64)
159 3oq4_A DBF4, protein DNA52; DD 94.4 0.07 2.4E-06 46.8 6.3 58 16-73 32-97 (134)
160 2rsd_A E3 SUMO-protein ligase 94.1 0.029 9.9E-07 43.5 2.9 47 435-483 8-65 (68)
161 3l41_A BRCT-containing protein 94.0 0.035 1.2E-06 52.9 4.0 81 1-83 114-212 (220)
162 1wew_A DNA-binding family prot 93.7 0.032 1.1E-06 44.4 2.7 47 435-483 14-72 (78)
163 1wem_A Death associated transc 93.3 0.034 1.2E-06 43.9 2.1 45 437-483 16-70 (76)
164 3oq0_A DBF4, protein DNA52; DD 93.2 0.15 5.1E-06 45.6 6.2 57 17-73 50-114 (151)
165 1wee_A PHD finger family prote 93.1 0.048 1.6E-06 42.7 2.7 47 435-483 14-66 (72)
166 1wep_A PHF8; structural genomi 92.2 0.055 1.9E-06 43.1 1.9 45 437-483 12-63 (79)
167 2ri7_A Nucleosome-remodeling f 91.7 0.043 1.5E-06 50.1 0.9 47 435-483 6-59 (174)
168 2xb1_A Pygopus homolog 2, B-ce 91.7 0.04 1.4E-06 46.5 0.6 45 438-483 4-61 (105)
169 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.065 2.2E-06 44.2 1.8 51 437-491 3-77 (101)
170 3o7a_A PHD finger protein 13 v 91.2 0.088 3E-06 38.5 1.9 40 442-482 8-51 (52)
171 2vpb_A Hpygo1, pygopus homolog 91.0 0.037 1.3E-06 42.6 -0.2 43 438-481 9-64 (65)
172 2kwj_A Zinc finger protein DPF 90.7 0.077 2.6E-06 45.3 1.4 43 438-481 2-59 (114)
173 1wil_A KIAA1045 protein; ring 90.6 0.14 4.9E-06 41.2 2.7 46 436-483 14-76 (89)
174 2kgg_A Histone demethylase jar 90.4 0.073 2.5E-06 38.9 0.9 43 438-481 3-52 (52)
175 2aq4_A DNA repair protein REV1 90.2 0.025 8.4E-07 59.3 -2.6 29 132-165 8-36 (434)
176 3v43_A Histone acetyltransfera 89.9 0.073 2.5E-06 45.3 0.6 43 438-481 6-62 (112)
177 3kqi_A GRC5, PHD finger protei 88.9 0.085 2.9E-06 41.6 0.2 44 438-483 11-61 (75)
178 2ko5_A Ring finger protein Z; 88.8 0.18 6.1E-06 41.5 2.1 51 336-395 24-75 (99)
179 2ffw_A Midline-1; B-BOX, ring 87.4 0.37 1.3E-05 38.2 3.1 31 434-468 27-57 (78)
180 2cs3_A Protein C14ORF4, MY039 87.2 0.52 1.8E-05 37.6 3.7 47 338-386 13-63 (93)
181 3gqc_A DNA repair protein REV1 86.0 0.054 1.8E-06 57.9 -3.4 31 131-166 15-45 (504)
182 2lbm_A Transcriptional regulat 84.8 0.32 1.1E-05 43.2 1.6 42 437-482 63-116 (142)
183 4gne_A Histone-lysine N-methyl 79.4 1.6 5.6E-05 36.7 3.9 45 338-387 13-59 (107)
184 4b2u_A S67; toxin, ICK; NMR {S 78.2 0.53 1.8E-05 30.5 0.4 21 470-490 14-35 (36)
185 3m62_A Ubiquitin conjugation f 77.8 1.5 5E-05 50.1 4.1 53 335-394 886-939 (968)
186 3kv5_D JMJC domain-containing 74.2 0.68 2.3E-05 49.2 0.2 46 436-483 36-88 (488)
187 3ql9_A Transcriptional regulat 74.2 0.83 2.8E-05 39.9 0.7 43 436-482 56-110 (129)
188 2lri_C Autoimmune regulator; Z 74.1 1.8 6.2E-05 33.1 2.5 49 340-391 12-60 (66)
189 3i2d_A E3 SUMO-protein ligase 72.8 3 0.0001 42.6 4.5 53 340-394 249-301 (371)
190 3pur_A Lysine-specific demethy 70.8 1.5 5.2E-05 46.7 1.9 34 449-483 55-94 (528)
191 4fo9_A E3 SUMO-protein ligase 70.8 3.7 0.00013 41.8 4.6 54 339-394 214-267 (360)
192 1wil_A KIAA1045 protein; ring 58.5 9.3 0.00032 30.8 3.8 48 339-388 14-74 (89)
193 1weo_A Cellulose synthase, cat 57.5 11 0.00037 30.6 4.1 49 340-393 16-70 (93)
194 2jrp_A Putative cytoplasmic pr 56.5 4.2 0.00014 32.5 1.5 12 382-393 3-14 (81)
195 3lqh_A Histone-lysine N-methyl 53.3 5.8 0.0002 36.5 2.1 32 451-483 20-63 (183)
196 1weq_A PHD finger protein 7; s 51.7 7.1 0.00024 31.5 2.1 34 450-483 44-79 (85)
197 2l5u_A Chromodomain-helicase-D 49.4 6.5 0.00022 29.3 1.5 49 338-389 9-57 (61)
198 2k16_A Transcription initiatio 46.0 6.7 0.00023 30.3 1.2 53 338-392 16-70 (75)
199 4bbq_A Lysine-specific demethy 45.7 8.5 0.00029 32.2 1.9 32 450-482 73-113 (117)
200 3mjh_B Early endosome antigen 42.1 6.7 0.00023 26.1 0.5 16 338-353 3-18 (34)
201 2did_A Tripartite motif protei 38.9 11 0.00036 26.9 1.2 20 472-491 6-25 (53)
202 3o36_A Transcription intermedi 36.2 6.5 0.00022 35.7 -0.4 50 339-391 3-52 (184)
203 3u5n_A E3 ubiquitin-protein li 34.0 6.7 0.00023 36.4 -0.7 50 339-391 6-55 (207)
204 1z60_A TFIIH basal transcripti 34.0 20 0.00068 26.8 2.0 40 341-387 16-58 (59)
205 2lbm_A Transcriptional regulat 33.8 26 0.00088 30.9 3.1 50 339-389 62-116 (142)
206 1fre_A Nuclear factor XNF7; zi 31.9 15 0.00052 24.6 1.0 17 475-491 4-20 (42)
207 3ql9_A Transcriptional regulat 30.3 46 0.0016 28.7 4.0 49 340-389 57-110 (129)
208 1fp0_A KAP-1 corepressor; PHD 30.1 11 0.00039 30.5 0.1 49 338-389 23-71 (88)
209 2d8v_A Zinc finger FYVE domain 29.5 21 0.00072 27.3 1.5 21 436-460 7-27 (67)
210 2yrg_A Tripartite motif-contai 29.4 16 0.00055 26.8 0.9 19 473-491 13-31 (59)
211 2jne_A Hypothetical protein YF 29.2 11 0.00037 31.2 -0.2 12 382-393 33-44 (101)
212 1wwh_A Nucleoporin 35, nucleop 29.1 1.2E+02 0.0041 25.8 6.4 62 3-66 24-87 (119)
213 2csv_A Tripartite motif protei 28.0 19 0.00066 27.3 1.1 20 472-491 16-35 (72)
214 2egm_A Tripartite motif-contai 28.0 19 0.00065 26.2 1.0 19 473-491 17-35 (57)
215 1x4w_A Hypothetical protein FL 25.2 73 0.0025 24.4 3.8 21 437-460 15-39 (67)
216 1vfy_A Phosphatidylinositol-3- 25.0 33 0.0011 26.3 1.9 30 340-369 11-43 (73)
217 2d8u_A Ubiquitin ligase TRIM63 23.3 31 0.0011 25.2 1.4 18 473-490 7-25 (64)
218 2ro1_A Transcription intermedi 23.2 14 0.00048 33.9 -0.6 47 341-390 3-49 (189)
219 2yw8_A RUN and FYVE domain-con 23.1 33 0.0011 26.9 1.7 32 338-369 17-51 (82)
220 1y02_A CARP2, FYVE-ring finger 22.9 27 0.00092 29.8 1.1 48 336-389 15-65 (120)
221 1z2q_A LM5-1; membrane protein 22.0 40 0.0014 26.6 1.9 32 338-369 19-53 (84)
222 1wd2_A Ariadne-1 protein homol 21.9 8.2 0.00028 28.9 -2.1 34 341-374 7-47 (60)
223 2ct7_A Ring finger protein 31; 21.6 13 0.00043 29.6 -1.1 30 342-371 27-61 (86)
224 1dvp_A HRS, hepatocyte growth 21.6 33 0.0011 31.9 1.6 31 338-368 159-192 (220)
225 1joc_A EEA1, early endosomal a 21.4 33 0.0011 29.3 1.4 30 339-368 68-100 (125)
226 2eps_A POZ-, at HOOK-, and zin 21.3 1.2E+02 0.0042 20.4 4.3 42 339-393 11-53 (54)
227 2xqn_T Testin, TESS; metal-bin 21.0 45 0.0015 27.7 2.2 47 339-393 29-75 (126)
228 2jmo_A Parkin; IBR, E3 ligase, 21.0 9.9 0.00034 29.9 -1.9 15 358-372 55-69 (80)
229 3nw0_A Non-structural maintena 20.6 28 0.00097 33.1 0.9 43 438-483 181-226 (238)
230 2yvr_A Transcription intermedi 20.6 31 0.001 24.0 0.9 17 474-490 6-23 (50)
231 3ttc_A HYPF, transcriptional r 20.2 40 0.0014 36.9 2.1 53 339-391 16-99 (657)
No 1
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.84 E-value=4.6e-22 Score=172.55 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=83.1
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|.||+||+|||++.+|.+|+++|+.+||+|+..+++++||||+..+.+.||..|.+|+|+||+++||+||++.|.++||.
T Consensus 22 F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ldE~ 101 (112)
T 3l46_A 22 FQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGET 101 (112)
T ss_dssp TTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSCCCGG
T ss_pred cCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCccChh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC
Q 011171 81 PYMLQ 85 (492)
Q Consensus 81 ~Y~l~ 85 (492)
.|.+.
T Consensus 102 ~Y~~~ 106 (112)
T 3l46_A 102 MYLYE 106 (112)
T ss_dssp GSBCC
T ss_pred hceec
Confidence 99983
No 2
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=1.4e-21 Score=168.81 Aligned_cols=85 Identities=16% Similarity=0.350 Sum_probs=83.0
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|+|++||++||.+.+|..|+++|+.+||+|+..++++|||||+..+.+.||++|.+|+|+||+++||+||++.|+++||.
T Consensus 13 F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ldE~ 92 (109)
T 2cou_A 13 FQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAGET 92 (109)
T ss_dssp TTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTSCCCGG
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCCcCChh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC
Q 011171 81 PYMLQ 85 (492)
Q Consensus 81 ~Y~l~ 85 (492)
+|.+.
T Consensus 93 ~Y~~~ 97 (109)
T 2cou_A 93 MYLYE 97 (109)
T ss_dssp GTBCC
T ss_pred ccCCC
Confidence 99984
No 3
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=163.79 Aligned_cols=88 Identities=30% Similarity=0.478 Sum_probs=84.5
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|+|++|+|||+.+.+|..|+.+|+.+||+|+..+++.||||||....+.||++|++|||+||+++||++|+++|+++||.
T Consensus 23 f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~l~e~ 102 (129)
T 2d8m_A 23 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQ 102 (129)
T ss_dssp STTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTSCCCGG
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCCcCChH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCC
Q 011171 81 PYMLQSGQ 88 (492)
Q Consensus 81 ~Y~l~s~~ 88 (492)
+|++....
T Consensus 103 ~Y~l~~~~ 110 (129)
T 2d8m_A 103 RYLMAGPG 110 (129)
T ss_dssp GGBCSSSS
T ss_pred hcccCCCC
Confidence 99986544
No 4
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.81 E-value=4.1e-20 Score=158.72 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=81.4
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEe---cCCCChhHHHHHhcCCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVC---WKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~---~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l 77 (492)
|+|++|++||+.+..|..|+++|..+||+|+..++++|||||| ....+.||++|+++||+||+++||++|+++|+++
T Consensus 16 l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~~~l 95 (107)
T 3l3e_A 16 LHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHL 95 (107)
T ss_dssp TTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHhCCCC
Confidence 7899999999988999999999999999999999999999999 4556899999999999999999999999999999
Q ss_pred CCCCcccCC
Q 011171 78 PERPYMLQS 86 (492)
Q Consensus 78 ~e~~Y~l~s 86 (492)
||.+|.+..
T Consensus 96 ~e~~Y~~~~ 104 (107)
T 3l3e_A 96 PESLYPHTY 104 (107)
T ss_dssp CGGGCCTTC
T ss_pred chhhCCCCC
Confidence 999999744
No 5
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.3e-18 Score=144.49 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=76.6
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccC--CCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMS--KSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt--~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~ 78 (492)
|+|++|+++|+....+..|+.+|..+||+|+..++ ..+||||+....+.|+..+ .+++||+++||+||+++|+++|
T Consensus 8 f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci~~~~~l~ 85 (92)
T 4id3_A 8 FKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSVKEARLLP 85 (92)
T ss_dssp TTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHHHHTSCCC
T ss_pred cCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHHHcCCcCC
Confidence 79999999999888899999999999999999999 8999999999888885543 6999999999999999999999
Q ss_pred CCCccc
Q 011171 79 ERPYML 84 (492)
Q Consensus 79 e~~Y~l 84 (492)
|++|+|
T Consensus 86 e~~Y~l 91 (92)
T 4id3_A 86 WQNYSL 91 (92)
T ss_dssp GGGGBC
T ss_pred hhhccc
Confidence 999987
No 6
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.75 E-value=2.5e-18 Score=148.00 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCcEEEecCCCc--c--hHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCC
Q 011171 1 MESVVATVSGYHG--T--ERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRR 76 (492)
Q Consensus 1 ~~g~~I~vSG~~~--~--er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~ 76 (492)
|+|++|+|.++.+ . ....+..++..+||+++..+++.+||||+..+.+.||++|++|+|+||+++||++|+++|++
T Consensus 8 f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~~~ 87 (107)
T 3pa6_A 8 LKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAGAH 87 (107)
T ss_dssp TTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHTSC
T ss_pred cCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhCcc
Confidence 7899999998853 2 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCC
Q 011171 77 LPERPYMLQSGQ 88 (492)
Q Consensus 77 l~e~~Y~l~s~~ 88 (492)
+||.+|.+....
T Consensus 88 vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 88 IDESLFPAANMN 99 (107)
T ss_dssp CCGGGSBCCCTT
T ss_pred CChhcccCCCCc
Confidence 999999985443
No 7
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=144.55 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccC-CCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMS-KSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt-~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
|+|++|+++|+...++..|+.+|..+||+|...++ ..+||||+....+.|++.|. +++||+++||+||+++|+++|+
T Consensus 13 F~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci~~~~~l~~ 90 (97)
T 2ebw_A 13 FSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESIKAGRLLSY 90 (97)
T ss_dssp TTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHHHHTSCCCS
T ss_pred CCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHHHcCCccCc
Confidence 89999999999988999999999999999999887 68999999999899998775 9999999999999999999999
Q ss_pred CCcccC
Q 011171 80 RPYMLQ 85 (492)
Q Consensus 80 ~~Y~l~ 85 (492)
++|.+-
T Consensus 91 ~~Y~l~ 96 (97)
T 2ebw_A 91 IPYQLY 96 (97)
T ss_dssp GGGBSC
T ss_pred hHcEec
Confidence 999873
No 8
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.70 E-value=1.9e-17 Score=166.83 Aligned_cols=88 Identities=25% Similarity=0.395 Sum_probs=83.6
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccC-CCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMS-KSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt-~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
|+|++|++|||.+.+|..|+.+|+.+||+|+..++ +++||||+..+.+.||++|++|||+||+++||+||+++|+++||
T Consensus 200 f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde 279 (298)
T 3olc_X 200 FLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDE 279 (298)
T ss_dssp TTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCG
T ss_pred cCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCc
Confidence 78999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CCcccCCCC
Q 011171 80 RPYMLQSGQ 88 (492)
Q Consensus 80 ~~Y~l~s~~ 88 (492)
.+|.+....
T Consensus 280 ~~Y~l~~~~ 288 (298)
T 3olc_X 280 SIYKTEPRP 288 (298)
T ss_dssp GGSBSCC--
T ss_pred hhcCCCCCc
Confidence 999985443
No 9
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.3e-16 Score=167.59 Aligned_cols=84 Identities=27% Similarity=0.368 Sum_probs=79.5
Q ss_pred CCCcEEEecCCCc----chHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhc-CCeEeccccHHHHHhhcC
Q 011171 1 MESVVATVSGYHG----TERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKF-RTIIVNHQWVEDCIKQHR 75 (492)
Q Consensus 1 ~~g~~I~vSG~~~----~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~-~i~IVs~~WL~dc~~~~~ 75 (492)
|+||+|++||+.. .++..|+.+|+.+||+|+..++++||||||..+.|.||++|+++ ||+||+++||++|+++|+
T Consensus 353 L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~k 432 (442)
T 3ef1_A 353 LKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWK 432 (442)
T ss_dssp STTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHTS
T ss_pred cCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHHcCC
Confidence 7899999999763 35789999999999999999999999999999999999999999 599999999999999999
Q ss_pred CCCCCCccc
Q 011171 76 RLPERPYML 84 (492)
Q Consensus 76 ~l~e~~Y~l 84 (492)
++||.+|+|
T Consensus 433 rldE~~YlL 441 (442)
T 3ef1_A 433 RLPESDYLL 441 (442)
T ss_dssp CCCGGGTBC
T ss_pred cCChhcccc
Confidence 999999986
No 10
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.63 E-value=2.5e-16 Score=163.09 Aligned_cols=84 Identities=27% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCc----chHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhc-CCeEeccccHHHHHhhcC
Q 011171 1 MESVVATVSGYHG----TERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKF-RTIIVNHQWVEDCIKQHR 75 (492)
Q Consensus 1 ~~g~~I~vSG~~~----~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~-~i~IVs~~WL~dc~~~~~ 75 (492)
|+|++|++||+.. .++..|+.+|+.+||+|+..++++||||||..+.|.||++|+++ ||+||+++||++|+++|+
T Consensus 283 L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~~~ 362 (372)
T 3ef0_A 283 LKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWK 362 (372)
T ss_dssp STTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHHTTS
T ss_pred cCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHHhCC
Confidence 7899999999853 35689999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCCCccc
Q 011171 76 RLPERPYML 84 (492)
Q Consensus 76 ~l~e~~Y~l 84 (492)
++||.+|+|
T Consensus 363 ~vdE~~Y~l 371 (372)
T 3ef0_A 363 RLPESDYLL 371 (372)
T ss_dssp CCCGGGGBC
T ss_pred cCChhhcee
Confidence 999999986
No 11
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.59 E-value=2.3e-15 Score=144.98 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=81.3
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC------CChhHHHHHhcCCeEeccccHHHHHhhc
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF------EGEKHSLAKKFRTIIVNHQWVEDCIKQH 74 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~------~~~K~~~A~~~~i~IVs~~WL~dc~~~~ 74 (492)
|++++|++|||...++..|.+++..+||.|+..++..|||||+... .+.||..|+++|++||+++||.+|+++|
T Consensus 5 ~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~~~ 84 (229)
T 1l0b_A 5 ERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQER 84 (229)
T ss_dssp CCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHTTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHHCC
Confidence 6799999999999999999999999999999999999999999974 6899999999999999999999999999
Q ss_pred CCCCCCCcccC
Q 011171 75 RRLPERPYMLQ 85 (492)
Q Consensus 75 ~~l~e~~Y~l~ 85 (492)
+++||++|.+.
T Consensus 85 ~~~~e~~y~~~ 95 (229)
T 1l0b_A 85 KLLSVHEFEVK 95 (229)
T ss_dssp SCCCSGGGBCC
T ss_pred CcCChHHeEec
Confidence 99999999984
No 12
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.59 E-value=3.8e-15 Score=127.27 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=80.4
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhc--CCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKF--RTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~--~i~IVs~~WL~dc~~~~~~l 77 (492)
|.|++++++|.. ..++..|+.+|.++||.+...++.+|||+|+..+.+.+++.|++. ++++|+|+||++|+++++++
T Consensus 8 F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~klv 87 (104)
T 3pc6_A 8 FEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQKLL 87 (104)
T ss_dssp TTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHTSCC
T ss_pred hCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcCccC
Confidence 789999999977 689999999999999999999999999999999999999999864 79999999999999999999
Q ss_pred CCCCcccC
Q 011171 78 PERPYMLQ 85 (492)
Q Consensus 78 ~e~~Y~l~ 85 (492)
|+++|.+.
T Consensus 88 p~~~y~~~ 95 (104)
T 3pc6_A 88 PHQLYGVV 95 (104)
T ss_dssp CGGGGBCC
T ss_pred Ccccceec
Confidence 99999973
No 13
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.58 E-value=3.7e-15 Score=132.66 Aligned_cols=83 Identities=19% Similarity=0.447 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHh---cCCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKK---FRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~---~~i~IVs~~WL~dc~~~~~~l 77 (492)
|+||+|+++||.+..+..|..+|..+||+++..++..+||||+..+. .+++.+.+ .+++||+++||+||+++|+++
T Consensus 41 F~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~-~~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~ll 119 (132)
T 1wf6_A 41 LDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD-DELKQFWNKSAHRPHVVGAKWLLECFSKGYML 119 (132)
T ss_dssp TTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC-SHHHHHHHHSCCCCCEEEHHHHHHHHHHSSCC
T ss_pred cCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch-HHHHHHHHhhCCCCeEechHHHHHHHHcCCcC
Confidence 78999999999999999999999999999999999999999998753 44444432 489999999999999999999
Q ss_pred CCCCccc
Q 011171 78 PERPYML 84 (492)
Q Consensus 78 ~e~~Y~l 84 (492)
||++|.+
T Consensus 120 ~e~~Y~~ 126 (132)
T 1wf6_A 120 SEEPYIH 126 (132)
T ss_dssp CSGGGBC
T ss_pred CHhhccC
Confidence 9999976
No 14
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.56 E-value=5.4e-15 Score=141.00 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC---CCChhHHHHHhcCCeEeccccHHHHHhhcCCCC
Q 011171 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK---FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 2 ~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~---~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~ 78 (492)
.+++|++|||...++..|.+++..+||++..+++..+||||+.. ..+.||..|.+.|++||+++||.+|+++++.+|
T Consensus 1 ~~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 1 GPLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 47999999999999999999999999999999999999999986 779999999999999999999999999999999
Q ss_pred CCCcccC
Q 011171 79 ERPYMLQ 85 (492)
Q Consensus 79 e~~Y~l~ 85 (492)
|++|.+.
T Consensus 81 e~~y~~~ 87 (210)
T 2nte_A 81 EEKYEIP 87 (210)
T ss_dssp GGGTBCT
T ss_pred hhhccCC
Confidence 9999984
No 15
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.56 E-value=5.4e-15 Score=140.59 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=79.6
Q ss_pred CCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC------CChhHHHHHhcCCeEeccccHHHHHhhcC
Q 011171 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF------EGEKHSLAKKFRTIIVNHQWVEDCIKQHR 75 (492)
Q Consensus 2 ~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~------~~~K~~~A~~~~i~IVs~~WL~dc~~~~~ 75 (492)
++++|++||+...++..|.+++..+||+++..++..+||||+... .+.||..|.+.|++||+++||.||+++++
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~~ 82 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERK 82 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTS
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCCC
Confidence 689999999999999999999999999999999999999999975 58999999999999999999999999999
Q ss_pred CCCCCCcccC
Q 011171 76 RLPERPYMLQ 85 (492)
Q Consensus 76 ~l~e~~Y~l~ 85 (492)
++||++|.+.
T Consensus 83 ~~~e~~y~~~ 92 (214)
T 1t15_A 83 MLNEHDFEVR 92 (214)
T ss_dssp CCCGGGGBCC
T ss_pred cCChHHeEee
Confidence 9999999984
No 16
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=140.00 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC-CChhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF-EGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~-~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
+.+++|++|||...++..+.++|..+||.|+.++ ..+||||+... .+.||..|.++|++||+++||.+|+++|+.+||
T Consensus 14 ~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~e 92 (219)
T 3sqd_A 14 ELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDE 92 (219)
T ss_dssp GGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCCS
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCCCh
Confidence 4689999999999999999999999999999997 89999999874 567999999999999999999999999999999
Q ss_pred CCcccC
Q 011171 80 RPYMLQ 85 (492)
Q Consensus 80 ~~Y~l~ 85 (492)
++|.+.
T Consensus 93 ~~y~l~ 98 (219)
T 3sqd_A 93 QNYILR 98 (219)
T ss_dssp GGGBCC
T ss_pred HhccCC
Confidence 999984
No 17
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.49 E-value=3.3e-14 Score=143.20 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=78.5
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
|+|++||+||+...++..|.++|+.+||+++.+++.+|||||+....+.||..|.++||+||+++||.+|+..++.++..
T Consensus 106 l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~~~ 185 (298)
T 3olc_X 106 MSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKIT 185 (298)
T ss_dssp TTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHTTCCS
T ss_pred cCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCcCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred Cc
Q 011171 81 PY 82 (492)
Q Consensus 81 ~Y 82 (492)
.|
T Consensus 186 ~~ 187 (298)
T 3olc_X 186 RY 187 (298)
T ss_dssp SG
T ss_pred cc
Confidence 55
No 18
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.46 E-value=1e-13 Score=135.05 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=79.3
Q ss_pred CCcEEEecCCCcchHHHHHHHHHhcCCEEec--ccCCCCcEEEecCC-CChhHHHHHhcCCeEeccccHHHHHhhcCCCC
Q 011171 2 ESVVATVSGYHGTERFNLIKLISYSGASYVG--TMSKSTTHLVCWKF-EGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 2 ~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~--~lt~~vTHLV~~~~-~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~ 78 (492)
++.+|++|||.+.++..+.++|..+||.|.. .++..|||||+..+ .+.||..|++.|++||+++||.+|+++++.+|
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l~ 87 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQ 87 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCCC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCCC
Confidence 5789999999999999999999999999976 58899999999986 59999999999999999999999999999999
Q ss_pred CCCcccCC
Q 011171 79 ERPYMLQS 86 (492)
Q Consensus 79 e~~Y~l~s 86 (492)
|++|.+..
T Consensus 88 E~~ye~~~ 95 (235)
T 3al2_A 88 EEDYEWGS 95 (235)
T ss_dssp SGGGBTTS
T ss_pred hhceeecC
Confidence 99999843
No 19
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.44 E-value=1.4e-13 Score=131.38 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=73.0
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC-CChhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF-EGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~-~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
+.+++|++|||...+ +.++|..+||.++.++++ +||||+... .+.||..|.+.|++||+++||.+|+++++.+||
T Consensus 10 ~~~~~v~~sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~l~e 85 (209)
T 2etx_A 10 STAPKVLFTGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPP 85 (209)
T ss_dssp --CCEEEECSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSCCCS
T ss_pred CCCcEEEEeCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCCCCh
Confidence 368999999998654 589999999999999984 999999874 699999999999999999999999999999999
Q ss_pred CCcccC
Q 011171 80 RPYMLQ 85 (492)
Q Consensus 80 ~~Y~l~ 85 (492)
++|.+.
T Consensus 86 ~~y~~~ 91 (209)
T 2etx_A 86 DEYVVT 91 (209)
T ss_dssp GGGBCC
T ss_pred hhcccc
Confidence 999983
No 20
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.44 E-value=1.8e-13 Score=130.03 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=78.0
Q ss_pred cEEEecCCCcchHHHHHHHHHhcCC-EEecccCCCCcEEEecCC-CChhHHHHHhcCCeEeccccHHHHHhhcCCCCCCC
Q 011171 4 VVATVSGYHGTERFNLIKLISYSGA-SYVGTMSKSTTHLVCWKF-EGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPERP 81 (492)
Q Consensus 4 ~~I~vSG~~~~er~~i~~li~~~Gg-~~~~~lt~~vTHLV~~~~-~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~~ 81 (492)
-+|++||++..++..|.++|..+|| .++..++..+||||+..+ .+.||..|++.|++||+++||.+|++.++.+||++
T Consensus 12 ~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~ 91 (199)
T 3u3z_A 12 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEP 91 (199)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGG
T ss_pred eEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhh
Confidence 4799999999999999999999987 788999999999999884 78999999999999999999999999999999999
Q ss_pred cccCC
Q 011171 82 YMLQS 86 (492)
Q Consensus 82 Y~l~s 86 (492)
|.+..
T Consensus 92 y~~~~ 96 (199)
T 3u3z_A 92 FELSH 96 (199)
T ss_dssp GBCTT
T ss_pred ccccC
Confidence 99854
No 21
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.36 E-value=8.8e-13 Score=128.88 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=77.9
Q ss_pred CCCcEEEecCC---CcchHHHHHHHHHhcCCEEecc-----c--CC-------------------CCcEEEecC-CCChh
Q 011171 1 MESVVATVSGY---HGTERFNLIKLISYSGASYVGT-----M--SK-------------------STTHLVCWK-FEGEK 50 (492)
Q Consensus 1 ~~g~~I~vSG~---~~~er~~i~~li~~~Gg~~~~~-----l--t~-------------------~vTHLV~~~-~~~~K 50 (492)
|+|++|++||. .+..+.+|.++|+.+||++..+ + .. ..||||+.. ..+.|
T Consensus 3 F~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~K 82 (241)
T 2vxb_A 3 FDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVK 82 (241)
T ss_dssp TTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCHH
T ss_pred CCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcHH
Confidence 89999999998 5678999999999999999887 2 11 249999996 45899
Q ss_pred HHHHHhcCCeEeccccHHHHHhhcCCCCCCCcccCCCC
Q 011171 51 HSLAKKFRTIIVNHQWVEDCIKQHRRLPERPYMLQSGQ 88 (492)
Q Consensus 51 ~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~~Y~l~s~~ 88 (492)
|.+|.++||+||+++||.||+++++.+|+.+|+|..+.
T Consensus 83 ~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~ 120 (241)
T 2vxb_A 83 YLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGY 120 (241)
T ss_dssp HHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEE
T ss_pred HHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCc
Confidence 99999999999999999999999999999999996544
No 22
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.35 E-value=1.2e-12 Score=129.22 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCcc-----------------------------hHHHHHHHHHhcCCEEecccCCC------CcEEEecC
Q 011171 1 MESVVATVSGYHGT-----------------------------ERFNLIKLISYSGASYVGTMSKS------TTHLVCWK 45 (492)
Q Consensus 1 ~~g~~I~vSG~~~~-----------------------------er~~i~~li~~~Gg~~~~~lt~~------vTHLV~~~ 45 (492)
|.|+.+++|++... .+.+|+++|+.+||+|..+++.. +||||+..
T Consensus 16 F~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa~~ 95 (259)
T 1kzy_C 16 FLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQ 95 (259)
T ss_dssp TTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEESS
T ss_pred cCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEEcCC
Confidence 78999999998553 66899999999999999999755 79999986
Q ss_pred -CCChhHHHHHhcCCeEeccccHHHHHhhcCCCCCCCcccCCCC
Q 011171 46 -FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPERPYMLQSGQ 88 (492)
Q Consensus 46 -~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~~Y~l~s~~ 88 (492)
..+.||..|.+.|++||+++||.||+++++.+|+.+|++..|.
T Consensus 96 ~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~ 139 (259)
T 1kzy_C 96 HCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGY 139 (259)
T ss_dssp CCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEE
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCc
Confidence 7789999999999999999999999999999999999996544
No 23
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.32 E-value=2.4e-12 Score=127.35 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=74.4
Q ss_pred CCCcEEEe-cCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcC-CeEeccccHHHHHhhcCCCC
Q 011171 1 MESVVATV-SGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFR-TIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 1 ~~g~~I~v-SG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~-i~IVs~~WL~dc~~~~~~l~ 78 (492)
|+|++|+| +|+....+.+|.++|..+||++..++++.+||+|+... +.|++.|.++| ++||+|+||.||+++++.||
T Consensus 11 F~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~-~~k~~~~~~~g~~~IV~p~Wv~Dci~~~~llp 89 (263)
T 3ii6_X 11 FEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSE-NIRVKNIILSNKHDVVKPAWLLECFKTKSFVP 89 (263)
T ss_dssp TTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSC-CHHHHHHHHSCSCCEECHHHHHHHHHHTSCCC
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCC-CHHHHHHHhcCCCCEeehHHHHHHHhcCCcCC
Confidence 89999998 68888999999999999999999999888888788765 49999999997 99999999999999999999
Q ss_pred CCCccc
Q 011171 79 ERPYML 84 (492)
Q Consensus 79 e~~Y~l 84 (492)
.++|.+
T Consensus 90 ~~p~~~ 95 (263)
T 3ii6_X 90 WQPRFM 95 (263)
T ss_dssp CCGGGE
T ss_pred CCHHHH
Confidence 999965
No 24
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.29 E-value=3.6e-12 Score=106.53 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=68.7
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhh
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
|.|.+|+|||.....|.+++.+|+.+||+|+..+++++||||+....+.|+++|.++||+||+.+|+.+.+..
T Consensus 8 l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 8 LKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp STTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 6899999999665599999999999999999999999999999998899999999999999999999999863
No 25
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.28 E-value=1.7e-12 Score=125.28 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=73.6
Q ss_pred CCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCC-CChhHHHHHhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 2 ESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKF-EGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 2 ~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~-~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
++++|++|||...+. .++|..+||.++.+++ .+||||+... .+.||..|+++|++||+++||.+|+++|+.+||+
T Consensus 7 ~~~~v~fSG~~~~~~---~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~ 82 (220)
T 3l41_A 7 KRVYITFTGYDKKPS---IDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEE 82 (220)
T ss_dssp CCEEEEECSCSSCCC---CGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSG
T ss_pred ceEEEEEeccCCCCC---cchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccC
Confidence 578999999987753 8999999999999986 6999999975 6999999999999999999999999999999999
Q ss_pred CcccC
Q 011171 81 PYMLQ 85 (492)
Q Consensus 81 ~Y~l~ 85 (492)
+|.+.
T Consensus 83 ~y~l~ 87 (220)
T 3l41_A 83 PYLLN 87 (220)
T ss_dssp GGBCC
T ss_pred ccccC
Confidence 99984
No 26
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.18 E-value=5.5e-11 Score=102.35 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC-hhHHHHHhcCCeEeccccHHHHHhhc
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG-EKHSLAKKFRTIIVNHQWVEDCIKQH 74 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~-~K~~~A~~~~i~IVs~~WL~dc~~~~ 74 (492)
|.|.+|+|||.. ...|.+++.+|+.+||+|+..++++++|||+....+ .|+++|.++||+||+.+||.+.+..+
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 679999999955 569999999999999999999999999999998777 99999999999999999999998764
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=97.07 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=46.4
Q ss_pred CCCCCcccccccccccccccEeec-CCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLA-CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~-CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.+.|+||++.|.+| ++++ |||.||..||..|+... ....||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLES----DEHTCPTCHQNDVSP 65 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHS----SSSCCSSSCCSSCCT
T ss_pred ccCCCCCCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhc----CCCcCCCCCCcCCCc
Confidence 4456789999999999999 7899 99999999999999972 247999999975543
No 28
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.15 E-value=9.3e-11 Score=101.49 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=70.9
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecC---CCChhHHHHHhcCCeEecccc----------H
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWK---FEGEKHSLAKKFRTIIVNHQW----------V 67 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~---~~~~K~~~A~~~~i~IVs~~W----------L 67 (492)
|.|.+|+|||-....|.+++++|+.+||+|+..+++++||||+.. ..+.|+++|.++||+||+.+| +
T Consensus 11 l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~~~~ 90 (113)
T 2cok_A 11 LSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSASTKSL 90 (113)
T ss_dssp SSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCCSCH
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhchhH
Confidence 689999999955559999999999999999999999999999983 368999999999999999999 5
Q ss_pred HHHHhhcCCCCCCC
Q 011171 68 EDCIKQHRRLPERP 81 (492)
Q Consensus 68 ~dc~~~~~~l~e~~ 81 (492)
.+|+....++|+..
T Consensus 91 ~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 91 QELFLAHILSSWGA 104 (113)
T ss_dssp HHHHHHTBCSSCCC
T ss_pred HHHHHHhcCCCCCC
Confidence 56677777777655
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.2e-11 Score=95.47 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccccccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.+.|+||++.+.+| +++ +|||.||..||..|+.. ...||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCSS
T ss_pred hhcCCCCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCcc
Confidence 4456789999999999999 555 99999999999999987 67999999987654
No 30
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.6e-11 Score=101.20 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC-hhHHHHHhcCCeEeccccHHHHHhh
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG-EKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~-~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
|.|.+|+|||.. ...|.+++.+|+.+||+|+..++++++|||+....+ .|+++|.++||+||+.+||.+.+..
T Consensus 23 l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 23 LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp STTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred cCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 679999999965 569999999999999999999999999999997666 9999999999999999999999974
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=99.13 Aligned_cols=54 Identities=30% Similarity=0.661 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccccccEeec-CCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLA-CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~-CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.|.+| ++++ |||+||..||..|+... +...||+||..+..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLES----DEHTCPTCHQNDVS 62 (92)
T ss_dssp CCCCTTTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHC----TTCCCTTTCCSSCC
T ss_pred ccCCcCCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhc----CCCcCcCCCCcCCC
Confidence 3456789999999999999 7899 99999999999999862 35799999998743
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=6e-11 Score=95.95 Aligned_cols=58 Identities=22% Similarity=0.566 Sum_probs=48.4
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||..|+......+....||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4456788999999999999 789999999999999999883222346799999998764
No 33
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.11 E-value=4e-11 Score=96.19 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=46.3
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+.+.|+||++.|.+| ++++|||+||..||..|+.. +...||+||+.+...
T Consensus 4 ~~~~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~-----~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLHA 56 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTT-----TCCBCTTTCCBCSSC
T ss_pred CCcccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHH-----CcCCCCCCcCCCChh
Confidence 346689999999999999 78999999999999999986 367899999987653
No 34
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7e-11 Score=95.58 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=44.2
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
..+.+.|+||++.|.+| ++++|||.||..||..|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP-VVTKCRHYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 34568999999999999 78999999999999999987 679999999876
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=2e-11 Score=109.02 Aligned_cols=50 Identities=36% Similarity=0.899 Sum_probs=44.9
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
++++.|+||++.|.+| ++++|||.||..||..|+.. ...||+||+++...
T Consensus 51 ~~~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR------KIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSE-EEETTSCEEEHHHHHHHTTT------CSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCc-eECCCCCCccHHHHHHHHHc------CCcCCCCCCcCCCC
Confidence 4567899999999999 78999999999999999987 67899999988654
No 36
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.8e-11 Score=92.31 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=45.4
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||..|+.. ....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSS-----SSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTT-----SSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHh-----CcCCCCCCCcCCCh
Confidence 3446679999999999999 67999999999999999964 26789999998764
No 37
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4e-11 Score=94.70 Aligned_cols=50 Identities=26% Similarity=0.590 Sum_probs=44.6
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.|+||++.+.+| +.++|||.||..||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWL------GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTC------SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHC------CCcCcCcCchhCH
Confidence 34578999999999999 78999999999999999987 5799999998764
No 38
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.08 E-value=1.5e-10 Score=114.36 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=66.4
Q ss_pred CCCcEEEecCCC----------cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCCh--hHHHHHh---cCCeEeccc
Q 011171 1 MESVVATVSGYH----------GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGE--KHSLAKK---FRTIIVNHQ 65 (492)
Q Consensus 1 ~~g~~I~vSG~~----------~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~--K~~~A~~---~~i~IVs~~ 65 (492)
|+||+|.+.++. +.....++.+|..+||+++..++..+||+|+..+... .++...+ .+++||+++
T Consensus 165 F~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~iV~~~ 244 (263)
T 3ii6_X 165 FRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKES 244 (263)
T ss_dssp TTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEEEETH
T ss_pred hCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEEeChH
Confidence 789999997763 1122345889999999999999999999999875431 1222222 278999999
Q ss_pred cHHHHHhhcCCCCCCCccc
Q 011171 66 WVEDCIKQHRRLPERPYML 84 (492)
Q Consensus 66 WL~dc~~~~~~l~e~~Y~l 84 (492)
||++|+++|+++||++|.|
T Consensus 245 Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 245 WVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp HHHHHHHTTSCCCGGGTBC
T ss_pred HHHHHHHcCCcCCHhhCCC
Confidence 9999999999999999975
No 39
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=97.45 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=64.2
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecc-----------cCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGT-----------MSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVED 69 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~-----------lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~d 69 (492)
|+|+++++++- ..+..|..+|..+||++..+ ....+||+|+..+...+ +..+..+|.|+||+|
T Consensus 13 F~g~~F~i~~e--~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~----~~~~r~~VqPqWV~D 86 (100)
T 2ep8_A 13 FEGLKFFLNRE--VPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT----SVIGRCYVQPQWVFD 86 (100)
T ss_dssp TSSCEEECCSS--SCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC----CBTTBEEECTHHHHH
T ss_pred cCCcEEEEecC--CCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh----hcCCCeEEcchHHHH
Confidence 78999999873 45788999999999999876 35789999998764322 123779999999999
Q ss_pred HHhhcCCCCCCCcc
Q 011171 70 CIKQHRRLPERPYM 83 (492)
Q Consensus 70 c~~~~~~l~e~~Y~ 83 (492)
|+.++++||+++|.
T Consensus 87 cin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 87 SVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHTSCCCTTTCC
T ss_pred HHhcCCcCChhhcC
Confidence 99999999999994
No 40
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.7e-11 Score=92.79 Aligned_cols=55 Identities=31% Similarity=0.722 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||..|+... +....||+||+.+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence 4456788999999999999 778999999999999999731 236799999998764
No 41
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.3e-11 Score=91.56 Aligned_cols=52 Identities=33% Similarity=0.784 Sum_probs=44.5
Q ss_pred CCCCccccccccccccccc------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTR------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...+...|+||++.|.+|. ++++|||.||..||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccCc
Confidence 3456789999999998762 67899999999999999998 6799999998753
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7.9e-11 Score=95.27 Aligned_cols=58 Identities=28% Similarity=0.683 Sum_probs=48.2
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.+.+| +.++|||.||..||..|+...........||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4456788999999999999 678999999999999999873222347799999998765
No 43
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=99.93 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCCcEEEec--CCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHH-h-----cCCeEeccccHHHHHh
Q 011171 1 MESVVATVS--GYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAK-K-----FRTIIVNHQWVEDCIK 72 (492)
Q Consensus 1 ~~g~~I~vS--G~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~-~-----~~i~IVs~~WL~dc~~ 72 (492)
|+|++|.+- |.....+.....++..+||+++..++..+||+|+.+..+.+-..+. + .+++||+++|+.||++
T Consensus 12 F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~ 91 (106)
T 2jw5_A 12 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQ 91 (106)
T ss_dssp GGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHH
T ss_pred eCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHHHHh
Confidence 567777774 3334445566779999999999999999999999854433322111 1 2678999999999999
Q ss_pred hcCCCCCCCcccC
Q 011171 73 QHRRLPERPYMLQ 85 (492)
Q Consensus 73 ~~~~l~e~~Y~l~ 85 (492)
+|++|||+.|.+.
T Consensus 92 ~~~llde~~y~~~ 104 (106)
T 2jw5_A 92 ERRLVDVAGFSIF 104 (106)
T ss_dssp TCSCCCGGGTBCS
T ss_pred cCcccCccccccc
Confidence 9999999999873
No 44
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.05 E-value=8.1e-11 Score=92.35 Aligned_cols=51 Identities=33% Similarity=0.800 Sum_probs=44.3
Q ss_pred CCCccccccccccccccc------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSSTR------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.|+||++.+.+|+ +.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc------CCCCCCCCCccCh
Confidence 356789999999998762 67899999999999999988 5799999998764
No 45
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=94.59 Aligned_cols=55 Identities=25% Similarity=0.630 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccc----ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSS----TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~----p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.|.+ | ++++|||.||..||..|+... .....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRP-KLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCE-EECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCe-EECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccc
Confidence 445677899999999998 8 789999999999999999872 135799999998764
No 46
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=8.9e-11 Score=99.14 Aligned_cols=52 Identities=27% Similarity=0.765 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccccEe-ecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGV-LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~-l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+.+.|+||++.|.+| +. ++|||.||..||..|+... ...||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCc-cccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcCCH
Confidence 446789999999999999 66 9999999999999999982 3799999999865
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.03 E-value=1.7e-10 Score=94.69 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=46.3
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+++.||||++.|.+| ++++|||+||..||..|+.. ...||+|+.++...
T Consensus 10 ~~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLN------SPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcCC-eECCCCCEECHHHHHHHHhc------CCCCCCCcCCCChH
Confidence 345689999999999999 88999999999999999997 57899999987653
No 48
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=88.54 Aligned_cols=49 Identities=31% Similarity=0.779 Sum_probs=42.0
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||.+|+... +....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETS---CGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC-EECTTSSEECHHHHHHHHHHC---SSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe-EEeCCCCcchHHHHHHHHHcC---CCCCcCcCC
Confidence 4456789999999999999 788999999999999999852 236789998
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=101.87 Aligned_cols=50 Identities=18% Similarity=0.534 Sum_probs=44.8
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+.|+||++.|.+| ++++|||+||..||..|+.. ....||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFRA-----QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHhH-----CcCCCCCCCccCCC
Confidence 4678999999999999 78999999999999999985 25699999999876
No 50
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.01 E-value=6e-11 Score=95.09 Aligned_cols=58 Identities=29% Similarity=0.661 Sum_probs=47.2
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhc-cCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMA-SVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~-~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.|.+| ++++|||.||..||..|+.... ..+....||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456789999999999999 6799999999999999998621 11236789999998765
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.01 E-value=1.4e-10 Score=90.40 Aligned_cols=50 Identities=40% Similarity=0.857 Sum_probs=44.1
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
....|+||++.+.+|.+.++|||.||..||..|+.. ...||+||+.+...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ------NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH------SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC------cCcCcCCChhhHhh
Confidence 457899999999987678999999999999999987 67999999987653
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=3.2e-11 Score=105.61 Aligned_cols=50 Identities=34% Similarity=0.816 Sum_probs=43.8
Q ss_pred CCccccccccccccccc------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTR------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+.|+||++.|.+|+ +.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT------CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh------CCCCCCCCCcCcc
Confidence 45789999999998872 68999999999999999987 5699999998764
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=90.24 Aligned_cols=51 Identities=35% Similarity=0.834 Sum_probs=43.7
Q ss_pred CCCcccccccccccccc--cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSST--RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p--~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+...|+||++.|..+ +..++|+|.||..||.+|+.. ...||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCCC
Confidence 34667999999999865 467899999999999999988 6789999998764
No 54
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=87.83 Aligned_cols=49 Identities=31% Similarity=0.763 Sum_probs=42.8
Q ss_pred Cccccccccccccccc------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTR------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+.+.|+||++.+.+|. +.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCCc
Confidence 4678999999998762 67899999999999999998 6799999998765
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.97 E-value=2e-10 Score=98.11 Aligned_cols=51 Identities=27% Similarity=0.717 Sum_probs=45.2
Q ss_pred CCCcccccccccccccccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
+.+.+.|+||++.|.+| +++ +|||+||..||..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA-TTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc-CEeCCCCChhhHHHHHHHHHh------CCcCcCCCcccccc
Confidence 35678999999999999 566 99999999999999987 58999999988764
No 56
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=3e-10 Score=87.94 Aligned_cols=50 Identities=26% Similarity=0.630 Sum_probs=42.4
Q ss_pred Cccccccccc-cccccc---EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWT-EFSSTR---GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e-~~~~p~---~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+++.|+||++ .+.+|. ++++|||.||..||.+|+.. +...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----CCCcCCCCCCcccc
Confidence 4678999999 888884 46899999999999999876 25789999998765
No 57
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.97 E-value=2.2e-10 Score=85.46 Aligned_cols=48 Identities=33% Similarity=0.923 Sum_probs=41.3
Q ss_pred CCccccccccccccc---ccEeec-CCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 338 SGELSCVICWTEFSS---TRGVLA-CGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~---p~~~l~-CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
++...|+||++.|.+ + ..++ |||.||..||.+|+.. ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT------CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc------CCcCcCCCCEeE
Confidence 456799999999986 4 6676 9999999999999987 678999998764
No 58
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=5e-10 Score=87.55 Aligned_cols=51 Identities=25% Similarity=0.649 Sum_probs=42.7
Q ss_pred CCccccccccccccc--ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSS--TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~--p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+...|+||++.|.. +++.++|||.||..||..|+.. ...||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccCc
Confidence 456789999999863 3367999999999999999998 56799999987653
No 59
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.97 E-value=2.8e-10 Score=84.82 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=41.4
Q ss_pred Cccccccccccccc---ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 339 GELSCVICWTEFSS---TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 339 e~l~C~IC~e~~~~---p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
+...|+||++.+.+ +++.++|+|.||..||.+|+.. ...||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 45789999999965 2378999999999999999998 589999998764
No 60
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=89.53 Aligned_cols=54 Identities=24% Similarity=0.732 Sum_probs=44.5
Q ss_pred CCCCcccccccccccccc--cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 336 STSGELSCVICWTEFSST--RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p--~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
...+...|+||++.|..+ +.+++|+|.||..||.+|+.. ...||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc------CCcCCCcCccccccc
Confidence 345578999999999865 245699999999999999998 568999999876543
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.96 E-value=8.6e-11 Score=101.39 Aligned_cols=53 Identities=26% Similarity=0.623 Sum_probs=46.5
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
....+++.|+||++.|.+| ++++|||+||..||..|+.. +...||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEK-----ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCT-----TTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCce-eEcCCCCHHhHHHHHHHHhH-----CcCCCCCCCcccCc
Confidence 4456789999999999999 78899999999999999976 36789999998875
No 62
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.96 E-value=2.7e-10 Score=91.29 Aligned_cols=53 Identities=28% Similarity=0.740 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccc--cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSST--RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p--~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...+...|+||++.|..+ +..++|+|.||..||.+|+.. ...||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ------HDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT------TCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc------CCcCcCcCCccCCc
Confidence 345578999999999865 345799999999999999987 57999999987653
No 63
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.95 E-value=3e-10 Score=95.40 Aligned_cols=49 Identities=27% Similarity=0.758 Sum_probs=43.8
Q ss_pred CCcccccccccccccccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+.|+||++.|.+| +++ +|||.||..||..|+.. ...||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCCh
Confidence 4578999999999999 555 89999999999999987 6799999998875
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=8e-10 Score=93.24 Aligned_cols=52 Identities=17% Similarity=0.021 Sum_probs=46.2
Q ss_pred CCCCcccccccccccccccEeecCC-CcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACG-HRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~Cg-H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+++.||||+++|.+| ++++|| |+||..||..|+.. ...||+|+.++...
T Consensus 18 ~~p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~------~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTMD 70 (98)
T ss_dssp SCCTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCTT
T ss_pred cCcHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHh------CCCCCCCCCCCChh
Confidence 345689999999999999 889999 99999999999987 56899999988753
No 65
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.94 E-value=3.5e-10 Score=95.81 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=45.8
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.+.+.||||++.|.+| ++++|||+||..||..|+.. ...||+|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLN------SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTS------CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHc------CCCCCCCCCCCCh
Confidence 345689999999999999 88999999999999999986 5789999998775
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.93 E-value=4.4e-10 Score=93.19 Aligned_cols=51 Identities=31% Similarity=0.818 Sum_probs=42.9
Q ss_pred CCCccccccccccccc--ccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSS--TRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~--p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..++..|+||++.|.. .++.++|||.||..||..|+.. ...||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK------SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT------TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc------CCcCcCcCccCCC
Confidence 3456899999999985 2267899999999999999987 6699999998754
No 67
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.2e-10 Score=84.68 Aligned_cols=49 Identities=31% Similarity=0.891 Sum_probs=40.8
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||..|+... .....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP-VIIECGHNFCKACITRWWEDL---ERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc-EeCCCCCccCHHHHHHHHHhc---CCCCCCCCC
Confidence 3445678999999999999 679999999999999997641 136789998
No 68
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=7e-10 Score=96.28 Aligned_cols=54 Identities=24% Similarity=0.572 Sum_probs=47.2
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.+.|+||++.+.+| ++++|||.||..||..|+... ...||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 13 PPLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN 66 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCHH
Confidence 4567789999999999999 789999999999999999982 34899999988753
No 69
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=5.5e-10 Score=101.35 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=45.1
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+.|+||++.|.+| ++++|||+||..||..|+.. ....||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKA-----QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC-EEcCCCCchhHHHHHHHHHh-----CCCcCCCCCccCCCC
Confidence 3568999999999999 78999999999999999987 256899999988765
No 70
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.90 E-value=7.4e-10 Score=105.00 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCCc-EEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCCC
Q 011171 1 MESV-VATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLPE 79 (492)
Q Consensus 1 ~~g~-~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~e 79 (492)
|+|+ +++++++....+..|..+|+..||++...+. .++++|+.... ++.++++||+++||+||+.+++.+|+
T Consensus 120 F~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~~------~~~~~~~~V~p~Wi~DsI~~~~llp~ 192 (199)
T 3u3z_A 120 FADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVIGPYSG------KKKATVKYLSEKWVLDSITQHKVCAP 192 (199)
T ss_dssp TTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESCCCS------CCCTTCEEECHHHHHHHHHHTSCCCG
T ss_pred hCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeCCch------hccCCCcEEChhHHHHHHHcCCcCCh
Confidence 7889 6899999998999999999999999999985 56777765432 34679999999999999999999999
Q ss_pred CCccc
Q 011171 80 RPYML 84 (492)
Q Consensus 80 ~~Y~l 84 (492)
++|++
T Consensus 193 ~~Y~~ 197 (199)
T 3u3z_A 193 ENYLL 197 (199)
T ss_dssp GGGBC
T ss_pred HhccC
Confidence 99987
No 71
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.1e-10 Score=114.84 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCCcEEEe-cCCCc------chHHHHHHHHHhcCCEEecccCCC-----CcEEEecCCCChhHHHHHhcCCeEeccccHH
Q 011171 1 MESVVATV-SGYHG------TERFNLIKLISYSGASYVGTMSKS-----TTHLVCWKFEGEKHSLAKKFRTIIVNHQWVE 68 (492)
Q Consensus 1 ~~g~~I~v-SG~~~------~er~~i~~li~~~Gg~~~~~lt~~-----vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~ 68 (492)
|+|++|+| +|+.. ..+..|..+|..+||++....... +||+|+.. .+.|++.+.++|++||+|+||.
T Consensus 6 F~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~~~~~~~vV~p~Wv~ 84 (264)
T 1z56_C 6 FAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKALIDRGYDILHPNWVL 84 (264)
T ss_dssp CCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGGTTTTCCCBCSSTTH
T ss_pred CCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHHHhCCCCEEechHHH
Confidence 78999987 66532 378899999999999987654332 47777765 5789988888899999999999
Q ss_pred HHHhhcCCCCCCCccc
Q 011171 69 DCIKQHRRLPERPYML 84 (492)
Q Consensus 69 dc~~~~~~l~e~~Y~l 84 (492)
||+.+++++|..+|.+
T Consensus 85 dci~~~~llp~~~y~~ 100 (264)
T 1z56_C 85 DCIAYKRLILIEPNYC 100 (264)
T ss_dssp HHHSSCSCCCCCSCBS
T ss_pred HHhhcCCCCCCChHHh
Confidence 9999999999999866
No 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.89 E-value=9.1e-10 Score=89.07 Aligned_cols=55 Identities=16% Similarity=0.545 Sum_probs=43.5
Q ss_pred CCCCCccccccccccccc-ccEeec--CCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSS-TRGVLA--CGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~-p~~~l~--CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+++++.||||++.+.. ++..++ |||.||..|+..++.. ....||.||+.+...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----SCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----CCCCCCCCCCccCCC
Confidence 456778999999998852 224455 9999999999998765 367999999988764
No 73
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.9e-09 Score=90.06 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=43.5
Q ss_pred CCCcccccccccccccccEeec-CCCcccHHhHHHHHHhhccCCCccCCCC--CCcc
Q 011171 337 TSGELSCVICWTEFSSTRGVLA-CGHRFCYSCIQNWADHMASVRKISTCPL--CKAS 390 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~-CgH~FC~~CI~~~l~~~~~~~~~~~CP~--Cr~~ 390 (492)
..+.+.||||++.|.+| ++++ |||+||..||..|+......+....||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45679999999999999 7785 9999999999999987311123579999 8876
No 74
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.88 E-value=6.7e-10 Score=109.26 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCCcEEEecCCCcc-hHHHHHHHHHhcCCEEecccCCCCcEEEecCCCC--hh----HHHHHhc---------CC-eEec
Q 011171 1 MESVVATVSGYHGT-ERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEG--EK----HSLAKKF---------RT-IIVN 63 (492)
Q Consensus 1 ~~g~~I~vSG~~~~-er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~--~K----~~~A~~~---------~i-~IVs 63 (492)
|+|++|+++|+... .+..+..+|..+||+++..++..+||+|+..... .+ .+.+... ++ +||+
T Consensus 161 F~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~ 240 (264)
T 1z56_C 161 FSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVA 240 (264)
T ss_dssp -------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEEC
T ss_pred hCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEec
Confidence 78999999998544 4445678899999999999998888888853221 22 2222221 34 9999
Q ss_pred cccHHHHHhhcCCCCCCCccc
Q 011171 64 HQWVEDCIKQHRRLPERPYML 84 (492)
Q Consensus 64 ~~WL~dc~~~~~~l~e~~Y~l 84 (492)
++||++|++.|+++||++|.+
T Consensus 241 ~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 241 PEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp THHHHHHHTTSCCCSSCCC--
T ss_pred HHHHHHHHHcCCcCCHHHcCC
Confidence 999999999999999999976
No 75
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.86 E-value=1e-09 Score=100.70 Aligned_cols=55 Identities=33% Similarity=0.637 Sum_probs=45.9
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
.+.+.+.|+||++.|.+|+.+++|||.||..||..|+.. +...||+||..+....
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-----GNKECPTCRKKLVSKR 104 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCCSGG
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-----CcCCCCCCCCcCCCcc
Confidence 445678999999999999433499999999999999986 3678999999986543
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.86 E-value=6.4e-10 Score=96.03 Aligned_cols=51 Identities=29% Similarity=0.584 Sum_probs=45.0
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+.|+||++.+.+| +.++|||.||..||..|+... ...||+||..+...
T Consensus 21 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILADP-VETSCKHLFCRICILRCLKVM-----GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHT-----CSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHC-----cCcCCCCCCCCCHh
Confidence 4578999999999999 779999999999999999872 56899999987764
No 77
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.85 E-value=3.2e-09 Score=101.84 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=63.1
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCC-----CcEEEecCC----CChhHHHH-HhcCCeEeccccHHH
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKS-----TTHLVCWKF----EGEKHSLA-KKFRTIIVNHQWVED 69 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~-----vTHLV~~~~----~~~K~~~A-~~~~i~IVs~~WL~d 69 (492)
|.|+.|+++| |....+..|..+|+..||++...+... +||+|...+ ...+++.+ ...+++||+++||+|
T Consensus 118 F~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wlld 197 (229)
T 1l0b_A 118 FEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLD 197 (229)
T ss_dssp CTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHHHH
T ss_pred hcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHH
Confidence 7899999987 777889999999999999999999653 688655432 34556543 457999999999999
Q ss_pred HHhhcCCCCCCCcccC
Q 011171 70 CIKQHRRLPERPYMLQ 85 (492)
Q Consensus 70 c~~~~~~l~e~~Y~l~ 85 (492)
|+.+++.+|+++|++.
T Consensus 198 sI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 198 SISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHTTSCCCGGGGBCC
T ss_pred HHhcCCcCCccceEcc
Confidence 9999999999999884
No 78
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=4e-10 Score=88.39 Aligned_cols=51 Identities=31% Similarity=0.878 Sum_probs=44.2
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...+...|+||++.+.+ ++++|||.||..||..|+.. ...||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDR------HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCC------CSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHC------cCcCCCcCCcccCC
Confidence 34567899999999988 68999999999999999986 78999999887643
No 79
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-08 Score=89.28 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCCcEEEecCC--CcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHh-------cCCeEeccccHHHHH
Q 011171 1 MESVVATVSGY--HGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKK-------FRTIIVNHQWVEDCI 71 (492)
Q Consensus 1 ~~g~~I~vSG~--~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~-------~~i~IVs~~WL~dc~ 71 (492)
|.|++|.+-.+ ...-+..+.+++..+||++.+.++..|||+|+.+...+.+..-++ .+.+||+..||.+|+
T Consensus 21 F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~esm 100 (120)
T 2coe_A 21 FQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWLIECI 100 (120)
T ss_dssp CTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHHHHHH
Confidence 78999999654 334567789999999999999999999999997554333332222 268999999999999
Q ss_pred hhcCCCCCCCccc
Q 011171 72 KQHRRLPERPYML 84 (492)
Q Consensus 72 ~~~~~l~e~~Y~l 84 (492)
++++++||+.|..
T Consensus 101 k~g~lv~ee~~~~ 113 (120)
T 2coe_A 101 GAGKPVEMTGKHQ 113 (120)
T ss_dssp HTTSCCCCSSSSB
T ss_pred HcCCccCcccceE
Confidence 9999999976654
No 80
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.84 E-value=8.7e-10 Score=94.16 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=45.0
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+.|+||++.+.+| ++++|||.||..||..|+... .+...||+||..+...
T Consensus 19 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCHh
Confidence 4568999999999999 679999999999999999872 1246899999988753
No 81
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=1.5e-09 Score=93.30 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=42.5
Q ss_pred Cccccccccccccccc-----------------EeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSSTR-----------------GVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~-----------------~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+..|+||++.|..+. .+++|+|.||..||..|+.... ......||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCCC
Confidence 3468999999997641 2689999999999999996421 11367999999987654
No 82
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.82 E-value=2.8e-09 Score=100.92 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCCC----CcE-EEecCC----CChhHH-HHHhcCCeEeccccHHH
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSKS----TTH-LVCWKF----EGEKHS-LAKKFRTIIVNHQWVED 69 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~~----vTH-LV~~~~----~~~K~~-~A~~~~i~IVs~~WL~d 69 (492)
|+|+.|+++| |....+..|..+|+..||++...+... .+| +|...+ ...++. .|.+++++||+++||.|
T Consensus 116 F~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~d 195 (214)
T 1t15_A 116 FRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLD 195 (214)
T ss_dssp TTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHH
T ss_pred cCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHH
Confidence 7899999988 777789999999999999999988652 234 544432 222443 45678999999999999
Q ss_pred HHhhcCCCCCCCccc
Q 011171 70 CIKQHRRLPERPYML 84 (492)
Q Consensus 70 c~~~~~~l~e~~Y~l 84 (492)
|+.+++.+|+++|.+
T Consensus 196 si~~~~~l~~~~Y~l 210 (214)
T 1t15_A 196 SVALYQCQELDTYLI 210 (214)
T ss_dssp HHHHTSCCCSGGGBC
T ss_pred hHhhcCcCCCcceee
Confidence 999999999999987
No 83
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=87.46 Aligned_cols=49 Identities=27% Similarity=0.721 Sum_probs=39.4
Q ss_pred Ccccccccccccccc-------------cEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSST-------------RGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p-------------~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++..|+||++.|.++ ++.+ +|+|.||..||.+|+.. ..+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ------NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT------CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh------CCCCCCcCCCcch
Confidence 456788888888652 2445 59999999999999998 5699999998764
No 84
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79 E-value=9.3e-10 Score=98.87 Aligned_cols=53 Identities=19% Similarity=0.486 Sum_probs=45.8
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.+.+.|+||++.|.+| ++++|||.||..||..|+.. +...||+||.++..
T Consensus 26 ~~l~~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSS-----GPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGG-----SCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhc-----CCCCCCCCCCcccc
Confidence 3557789999999999999 78999999999999999986 25689999997643
No 85
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.2e-09 Score=82.46 Aligned_cols=47 Identities=28% Similarity=0.595 Sum_probs=40.3
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.+.|+||++.|.+| ++++|||+||..||..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~---------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-KLLPCLHTLCSGCLEAS---------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC-SCSTTSCCSBTTTCSSS---------SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe-EEcCCCCcccHHHHccC---------CCCCCcCCcEeecC
Confidence 4578999999999999 78999999999998762 56899999987653
No 86
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=4.4e-09 Score=103.24 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=44.8
Q ss_pred CCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.||||++.|.+| ++++|||+||..||..|+... ...||+|+.++...
T Consensus 205 ~~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~-----~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRV-----GHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHT-----CSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHC-----CCCCcCCCCCCchh
Confidence 34678999999999999 889999999999999999872 34599999988653
No 87
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.74 E-value=5.4e-09 Score=89.45 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=41.8
Q ss_pred Ccccccccccccccc-----------------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSST-----------------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p-----------------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++..|+||++.|..+ ++.++|+|.||..||.+|+.. ..+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcCCCCccee
Confidence 457899999998854 456899999999999999998 6799999998653
No 88
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.72 E-value=1.4e-08 Score=83.84 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccCC-CCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhcCCCC
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMSK-STTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRLP 78 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt~-~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l~ 78 (492)
|.|+++.+.+ +.. ...|...|.+.||.+...+.. ++||+|+... ...+.++|+|+||+||++++++||
T Consensus 17 Fsg~~~~l~~~v~~--~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~~Ll~ 86 (88)
T 3pc7_A 17 FTGVRLYLPPSTPD--FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKRRLVA 86 (88)
T ss_dssp STTCEECCCTTSTT--HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHTSCCS
T ss_pred hcCeEEEccCCcCc--hhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCCcccC
Confidence 7889999965 533 368889999999999887764 9999998663 233999999999999999999998
Q ss_pred C
Q 011171 79 E 79 (492)
Q Consensus 79 e 79 (492)
.
T Consensus 87 ~ 87 (88)
T 3pc7_A 87 P 87 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 89
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.1e-09 Score=93.13 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=42.1
Q ss_pred CCCcccccccccccccccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 337 TSGELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 337 ~~e~l~C~IC~e~~~~p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+.+.+.|+||++.|.+| +++ +|||+||..||..|+. ..||+||..+..
T Consensus 19 l~~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWI 67 (117)
T ss_dssp HHHTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSC
T ss_pred chhCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCcc
Confidence 35679999999999999 667 9999999999999986 379999998753
No 90
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=7.5e-09 Score=95.24 Aligned_cols=54 Identities=24% Similarity=0.572 Sum_probs=47.4
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.+.|+||++.|.+| ++++|||+||..||..|+... ...||+||..+...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN 66 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcchh
Confidence 4567889999999999999 779999999999999999872 45999999988763
No 91
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.70 E-value=1.1e-08 Score=95.45 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
..+.+.+.||||++.|.+| ++++|||+||..||..|+... ..+||+|+.++...
T Consensus 101 ~~ip~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~-----~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRV-----GHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHT-----CSBCTTTCCBCCGG
T ss_pred cCCcHhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhC-----CCCCCCCcCCCChh
Confidence 3445789999999999999 789999999999999999872 23799999987653
No 92
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=7.3e-09 Score=82.57 Aligned_cols=46 Identities=26% Similarity=0.608 Sum_probs=40.4
Q ss_pred CCcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+++.|+||++.+.+| +.+||||. ||..|+..| ..||+||+.+...
T Consensus 22 ~~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV----------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC----------SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC----------ccCCCcCcCccCc
Confidence 4568999999999999 78999999 999999877 4799999987654
No 93
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.59 E-value=2.7e-08 Score=94.41 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCcEEEecC-CCcchHHHHHHHHHhcCCEEecccC-----------------------CCCcEEEecCCCChhH--HHH
Q 011171 1 MESVVATVSG-YHGTERFNLIKLISYSGASYVGTMS-----------------------KSTTHLVCWKFEGEKH--SLA 54 (492)
Q Consensus 1 ~~g~~I~vSG-~~~~er~~i~~li~~~Gg~~~~~lt-----------------------~~vTHLV~~~~~~~K~--~~A 54 (492)
|+|+.|+++| |....+..|..+|+..||++..... +.+||+|...+. .|+ ..|
T Consensus 105 F~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~~~~ 183 (210)
T 2nte_A 105 FDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHPERV 183 (210)
T ss_dssp TTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCCSCS
T ss_pred cCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCHHHH
Confidence 7899999998 7778899999999999999986221 456999988764 332 235
Q ss_pred HhcCCeEeccccHHHHHhhcCCCCCC
Q 011171 55 KKFRTIIVNHQWVEDCIKQHRRLPER 80 (492)
Q Consensus 55 ~~~~i~IVs~~WL~dc~~~~~~l~e~ 80 (492)
..++|++|+++||+||+..+++||.+
T Consensus 184 ~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 184 RQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp EETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred hccCcccccHHHHHHHHHhCeeccCC
Confidence 55789999999999999999999975
No 94
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.58 E-value=1.8e-08 Score=78.15 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=42.4
Q ss_pred CCcccccccccccccccEee--cCCCc-ccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVL--ACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l--~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.++..|+||++.+.++ +.+ ||||. ||..|+..|+.. ...||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKR------NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHT------TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHc------CCcCCCcCcchhc
Confidence 4567899999999998 555 99999 899999999976 5689999998764
No 95
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.56 E-value=1.1e-07 Score=90.58 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCC--CcEEEecC-CCChhHHHHHhcCCeEeccccHHHHHhhcCCC
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKS--TTHLVCWK-FEGEKHSLAKKFRTIIVNHQWVEDCIKQHRRL 77 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~--vTHLV~~~-~~~~K~~~A~~~~i~IVs~~WL~dc~~~~~~l 77 (492)
|.|+.|+++++....+..|..+|+..||++...+.+. .+|+|... ....++..+.++|++||+++||.+|+...+ +
T Consensus 116 F~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~-l 194 (209)
T 2etx_A 116 LEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQE-A 194 (209)
T ss_dssp TTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTC-C
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhcc-c
Confidence 7899999999888888999999999999999988754 26666643 444677888889999999999999999866 5
Q ss_pred CCCCcccCC
Q 011171 78 PERPYMLQS 86 (492)
Q Consensus 78 ~e~~Y~l~s 86 (492)
+++.|.|..
T Consensus 195 d~e~y~l~~ 203 (209)
T 2etx_A 195 KPEAFVLSP 203 (209)
T ss_dssp CGGGGBCCT
T ss_pred ChHHheecC
Confidence 999999843
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.54 E-value=3.1e-08 Score=86.35 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=43.9
Q ss_pred CCcccccccccccccc------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSST------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+...|+||++.|.++ ++.++|||.||..||.+|+.. ...||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc------CCCCCCCCCcCChh
Confidence 4568899999999875 267899999999999999998 67999999987653
No 97
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.9e-08 Score=97.17 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCC--CCcccccc
Q 011171 336 STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPL--CKASFMSI 394 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~--Cr~~~~~~ 394 (492)
.....+.||||++.|.+|+..+.|||+||..||..|+.. ++...||+ |++.+...
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECGG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCchh
Confidence 346689999999999999434599999999999999986 23578999 99987653
No 98
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.4e-08 Score=78.57 Aligned_cols=53 Identities=32% Similarity=0.611 Sum_probs=43.3
Q ss_pred CCcccccccccccc--cccEeecCC-----CcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 338 SGELSCVICWTEFS--STRGVLACG-----HRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 338 ~e~l~C~IC~e~~~--~p~~~l~Cg-----H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
.++..|.||++.|. ++ +++||. |.||..||.+|+... ....||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSS----DTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHH----CCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhC----CCCCCCCCCCeeecCc
Confidence 44678999999885 56 678996 999999999999983 2469999999887543
No 99
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.52 E-value=4.5e-08 Score=101.26 Aligned_cols=50 Identities=26% Similarity=0.717 Sum_probs=44.0
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
....|+||++.+.+| +.++|||.||..|+..|+.. ....||+||+.+...
T Consensus 331 ~~~~C~ICle~~~~p-v~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCE-EEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCe-EEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCCc
Confidence 347999999999999 88999999999999999984 267899999987764
No 100
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.52 E-value=3e-07 Score=80.97 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=65.5
Q ss_pred CCCcEEEecCC--CcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHH-----HH-----HhcCCeEeccccHH
Q 011171 1 MESVVATVSGY--HGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHS-----LA-----KKFRTIIVNHQWVE 68 (492)
Q Consensus 1 ~~g~~I~vSG~--~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~-----~A-----~~~~i~IVs~~WL~ 68 (492)
|.|++|.|-++ -..-|..|.+++...|+++.+.++..|||+|+-+...+-.. .. ...+..+|+..||.
T Consensus 11 F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWlt 90 (133)
T 2dun_A 11 FPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDISWLT 90 (133)
T ss_dssp EEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHHH
T ss_pred cCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccHHHH
Confidence 56788888764 34467889999999999999999999999999655442211 11 11468999999999
Q ss_pred HHHhhcCCCCCCCcc
Q 011171 69 DCIKQHRRLPERPYM 83 (492)
Q Consensus 69 dc~~~~~~l~e~~Y~ 83 (492)
+|++.++.+|++.|.
T Consensus 91 ecm~~g~pV~~e~~~ 105 (133)
T 2dun_A 91 ESLGAGQPVPVECRH 105 (133)
T ss_dssp HHHHHTSCCCCCTTT
T ss_pred HHHhcCCcCCcccce
Confidence 999999999995554
No 101
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.50 E-value=1.4e-08 Score=88.33 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=0.9
Q ss_pred Ccccccccccccccc-----------------cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSST-----------------RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p-----------------~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++..|+||++.|.++ ++.++|+|.||..||.+|+.. ...||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------CCcCCCCCCeeee
Confidence 456899999999753 233689999999999999998 6799999998653
No 102
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.48 E-value=4.9e-08 Score=75.38 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=41.3
Q ss_pred CcccccccccccccccEee--cCCCc-ccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVL--ACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l--~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
....|+||++.+.++ +++ ||||. ||..|+..|... ...||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA------GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT------TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh------CCcCCCcCchhhc
Confidence 356899999999998 566 99998 999999999876 5789999998764
No 103
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.1e-08 Score=77.71 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=39.2
Q ss_pred CCcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+...|+||++.+.+| +.+||||. ||..|+.. ...||+||..+...
T Consensus 23 ~~~~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEA----------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCB-CCSSSCCCCBCHHHHHH----------CSBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCE-EEecCCCHHHHHHHhhC----------CCCCccCCceecCc
Confidence 4567999999999999 78999999 99999942 46899999987653
No 104
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.36 E-value=3.9e-07 Score=89.67 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccC---------CCCcEEEecC--CCChhHHHHHhcCCeEeccccHH
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMS---------KSTTHLVCWK--FEGEKHSLAKKFRTIIVNHQWVE 68 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt---------~~vTHLV~~~--~~~~K~~~A~~~~i~IVs~~WL~ 68 (492)
|+|+.|++++.. +.-+..+..++..+||.+...+. ...+|+|... ....+++.|.+++++||+.+||.
T Consensus 156 F~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~ 235 (259)
T 1kzy_C 156 FQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVI 235 (259)
T ss_dssp TTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHH
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHHH
Confidence 789999998865 34556778899999999987774 1345555543 23477889999999999999999
Q ss_pred HHHhhcCCCCCCCc
Q 011171 69 DCIKQHRRLPERPY 82 (492)
Q Consensus 69 dc~~~~~~l~e~~Y 82 (492)
+|+..++++|++.+
T Consensus 236 ~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 236 QCLIVGERIGFKQH 249 (259)
T ss_dssp HHHHHTSCCCTTSS
T ss_pred HHHHhCCcCCCCcC
Confidence 99999999998755
No 105
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=2.1e-07 Score=77.29 Aligned_cols=52 Identities=21% Similarity=0.634 Sum_probs=40.8
Q ss_pred CcccccccccccccccEe--ecCCCcccHHhHHHHHHhhccCC--CccCCCC--CCcc
Q 011171 339 GELSCVICWTEFSSTRGV--LACGHRFCYSCIQNWADHMASVR--KISTCPL--CKAS 390 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~--l~CgH~FC~~CI~~~l~~~~~~~--~~~~CP~--Cr~~ 390 (492)
+.+.|+||++.+..|... .+|||.||..||..++......+ ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999987432 37999999999999998642222 2468999 9988
No 106
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4.2e-07 Score=71.27 Aligned_cols=46 Identities=24% Similarity=0.700 Sum_probs=39.3
Q ss_pred CCcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+...|+||++.+.++ +.+||||. ||..|+.. ...||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY----------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC-EETTTTBCCSCTTHHHH----------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE-EEECCCChhhhHHHHhc----------CCCCCCCCcchhce
Confidence 3467899999999998 88999999 99999872 46899999987664
No 107
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=2e-07 Score=75.23 Aligned_cols=46 Identities=26% Similarity=0.782 Sum_probs=39.3
Q ss_pred CCcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+...|+||++.+.++ +.+||||. ||..|+..| ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINS-TFCPCGHTVCCESCAAQL----------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCE-EEETTCBCCBCHHHHTTC----------SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcE-EEECCCCHHHHHHHHHhc----------CcCCCCCchhhCe
Confidence 3467899999999999 78999999 999998754 3799999987764
No 108
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.22 E-value=6.4e-07 Score=68.81 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=41.1
Q ss_pred cccccccccccccccEee-cCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFSSTRGVL-ACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l-~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
.+.||||++.+.+| +++ +|||.|+..||.+|+.. ...||+.+.++..
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~------~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKD------TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHH------HSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHh------CCCCcCCcCCCCh
Confidence 47899999999999 777 89999999999999987 3469999987764
No 109
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.6e-06 Score=69.27 Aligned_cols=51 Identities=20% Similarity=0.514 Sum_probs=40.8
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
....|+||.+.+..-.....|+|.||..||.+|++.. ....||+|++.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~----~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN----AEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC----SSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc----CCCCCCCCcCcCCC
Confidence 3468999999998543344899999999999999872 24799999987653
No 110
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.08 E-value=7e-07 Score=91.40 Aligned_cols=46 Identities=26% Similarity=0.731 Sum_probs=40.3
Q ss_pred CCcccccccccccccccEeecCCCc-ccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHR-FCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~-FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
++++.|+||++.+.+| +.+||||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~~~~-v~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV-VFIPCGHLVVCQECAPSL----------RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCE-EEETTCCEEECTTTGGGC----------SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCce-EEcCCCChhHhHHHHhcC----------CcCCCCCCCccCe
Confidence 4568999999999999 78999999 999999866 4799999987654
No 111
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=98.07 E-value=4.8e-07 Score=99.64 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHhhc
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQH 74 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~~ 74 (492)
|.|.+|++||.....|.+++.+|+.+||++++.+++++++||+....|.|+++|.++||+||+.+|+.+.+..+
T Consensus 588 l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 588 LSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 67999999995544999999999999999999999999999999888899999999999999999999998754
No 112
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=98.05 E-value=5.7e-07 Score=99.06 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCcEEEecCCC-cchHHHHHHHHHhcCCEEecccCCCCcEEEecCCCChhHHHHHhcCCeEeccccHHHHHh
Q 011171 1 MESVVATVSGYH-GTERFNLIKLISYSGASYVGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIK 72 (492)
Q Consensus 1 ~~g~~I~vSG~~-~~er~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~ 72 (492)
|.|.+|++||.. .-.|.+++.+|+.+||++++.++++|++||+....|.|+++|.++||+||+.+|+.+.+.
T Consensus 598 l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 598 FAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 578999999954 458999999999999999999999999999998888999999999999999999988763
No 113
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.98 E-value=1.5e-05 Score=76.36 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=68.4
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccCC-------------CCcEEEecCCCChhHHHHHhcCCeEeccccH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMSK-------------STTHLVCWKFEGEKHSLAKKFRTIIVNHQWV 67 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~-------------~vTHLV~~~~~~~K~~~A~~~~i~IVs~~WL 67 (492)
|+|+.|++++-....+..|..+|+..||++...+.. ....||........++.+.+.|++||+.+||
T Consensus 123 F~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~E~i 202 (219)
T 3sqd_A 123 FKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFV 202 (219)
T ss_dssp TTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEETHHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeHHHH
Confidence 789999999965666899999999999999998853 1245555556667788888899999999999
Q ss_pred HHHHhhcCCCCCCCccc
Q 011171 68 EDCIKQHRRLPERPYML 84 (492)
Q Consensus 68 ~dc~~~~~~l~e~~Y~l 84 (492)
.+|+-+.+ ++.+.|.+
T Consensus 203 l~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 203 LTGVLTQT-LDYESYKF 218 (219)
T ss_dssp HHHHHHTC-CCTTTSBC
T ss_pred HHHHHhee-ecchhccc
Confidence 99999655 58888875
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.90 E-value=4.2e-06 Score=72.26 Aligned_cols=43 Identities=40% Similarity=1.063 Sum_probs=36.6
Q ss_pred ccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 440 CIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 440 C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
|.+|........++.|+.|.. +||.+|++||+ +.|+|+.|...
T Consensus 61 C~~C~~~~~~~~ll~Cd~C~~-~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 61 CILCGTSENDDQLLFCDDCDR-GYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CTTTTCCTTTTTEEECSSSCC-EEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCcccccCCCCceEEcCCCCc-cccccccCCCccCCCCCCeECccccch
Confidence 888887766678999999995 99999999765 46999999754
No 115
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.88 E-value=9.5e-06 Score=62.03 Aligned_cols=51 Identities=24% Similarity=0.605 Sum_probs=41.2
Q ss_pred CCcccccccccccccccEeecCC--C---cccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 338 SGELSCVICWTEFSSTRGVLACG--H---RFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~Cg--H---~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
++...|.||++...++ .++||. + .||..||.+|+... +...||+|+..|..
T Consensus 4 ~~~~~CrIC~~~~~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~----~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE-RFRACGCTGELENVHRSCLSTWLTIS----RNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCC-CCCSCCCSSGGGSCCHHHHHHHHHHH----TCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCc-eecCcCCCCchhhhHHHHHHHHHHhC----CCCccCCCCCeeec
Confidence 3456899999987777 578865 4 89999999999873 36799999998764
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.87 E-value=5.9e-06 Score=70.82 Aligned_cols=92 Identities=23% Similarity=0.652 Sum_probs=66.4
Q ss_pred CCcccccccccccc-cc-cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchhcccccccchhhhhcccccc
Q 011171 338 SGELSCVICWTEFS-ST-RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCA 415 (492)
Q Consensus 338 ~e~l~C~IC~e~~~-~p-~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy~~~~~~~ 415 (492)
.++..|.||...-. .. +.-..|+..||..|+...+... ....+.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~--~~~~W~C~~C~--------------------------- 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPL--KRAGWQCPECK--------------------------- 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTT--TSTTCCCTTTC---------------------------
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccc--cccCccCCcCC---------------------------
Confidence 35678999987654 22 2234689999999986543321 12356666663
Q ss_pred cCCCcccccCCCCCCCCCCcccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 416 WSTRDVFILPDGDSASVQPSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 416 ~s~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
.|.+|.....+..++.|+.|.. +||.+|++||+ +.|+|+.|..
T Consensus 56 -----------------------~C~~C~~~~~~~~ll~Cd~C~~-~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 -----------------------VCQNCKQSGEDSKMLVCDTCDK-GYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp -----------------------CCTTTCCCSCCTTEEECSSSCC-EEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred -----------------------cccccCccCCCCCeeECCCCCc-HHhHHhcCCccccCCCCCcCCcCCcC
Confidence 3888988776678999999996 99999999765 4699999853
No 117
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.75 E-value=1.7e-05 Score=66.29 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=42.8
Q ss_pred cccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccchh
Q 011171 342 SCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSITK 396 (492)
Q Consensus 342 ~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~~ 396 (492)
.|++|.-.+..-..++||.|.||++|+..|... +...||.|+.++..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-----~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-----GDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-----cCCCCcCcCCeeeeeEE
Confidence 689999888865468999999999999999877 37899999999887655
No 118
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.71 E-value=3.6e-05 Score=74.85 Aligned_cols=74 Identities=8% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCCcEEEecCCCc-------------chHHHHHHHHHhcCCEE--ecccCCCCcEEEecCCCChhHHHHHhcCCeEeccc
Q 011171 1 MESVVATVSGYHG-------------TERFNLIKLISYSGASY--VGTMSKSTTHLVCWKFEGEKHSLAKKFRTIIVNHQ 65 (492)
Q Consensus 1 ~~g~~I~vSG~~~-------------~er~~i~~li~~~Gg~~--~~~lt~~vTHLV~~~~~~~K~~~A~~~~i~IVs~~ 65 (492)
|.|.+|.+++-.. +....+..++..+||++ ..++....+|+|...... .|.+++++||+++
T Consensus 152 f~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~----~~~~~~~~iV~~e 227 (241)
T 2vxb_A 152 LFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN----IVDETNCPVVDPE 227 (241)
T ss_dssp TTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC----CCSSCSSCEECHH
T ss_pred CCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc----ccccCCCCEecHH
Confidence 6889998764211 12478899999999999 544555678888874332 3667899999999
Q ss_pred cHHHHHhhcCCCC
Q 011171 66 WVEDCIKQHRRLP 78 (492)
Q Consensus 66 WL~dc~~~~~~l~ 78 (492)
||.+|+..+++++
T Consensus 228 Wv~~~i~~g~~l~ 240 (241)
T 2vxb_A 228 WIVECLISQSDIS 240 (241)
T ss_dssp HHHHHHHHTSCTT
T ss_pred HHHHHHHhceecC
Confidence 9999999999987
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.70 E-value=6.8e-05 Score=64.41 Aligned_cols=92 Identities=27% Similarity=0.567 Sum_probs=63.4
Q ss_pred Ccccccccccccc-------cc-cEeecCCCcccHHhHHHH--HHhhccCCCccCCCCCCcccccchhcccccccchhhh
Q 011171 339 GELSCVICWTEFS-------ST-RGVLACGHRFCYSCIQNW--ADHMASVRKISTCPLCKASFMSITKVEDAATSDQKIY 408 (492)
Q Consensus 339 e~l~C~IC~e~~~-------~p-~~~l~CgH~FC~~CI~~~--l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~iy 408 (492)
....|.+|+..-. .. +.-..|+..||..|+... +... -....+.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~-~~~~~W~C~~C~-------------------- 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVR-VKALRWQCIECK-------------------- 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHH-HHTSCCCCTTTC--------------------
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHH-hhccccccccCC--------------------
Confidence 3457999986521 12 122368999999999531 1110 012478899985
Q ss_pred hcccccccCCCcccccCCCCCCCCCCcccccccccCcc-CCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 409 SQTIPCAWSTRDVFILPDGDSASVQPSLLEACIECRSQ-EPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 409 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~C~~C~~~-~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
.|.+|... ..+..++.|+.|.. +||.+|++||+ +.|+|+.|..
T Consensus 63 ------------------------------~C~vC~~~~~~~~~ll~Cd~C~~-~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 ------------------------------TCSSCRDQGKNADNMLFCDSCDR-GFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp ------------------------------CBTTTCCCCCTTCCCEECTTTCC-EECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ------------------------------ccccccCcCCCccceEEcCCCCC-eeecccCCCCCCCCCCCCeECCCCCC
Confidence 28888864 34468999999995 99999998765 4699999963
No 120
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00038 Score=63.64 Aligned_cols=90 Identities=24% Similarity=0.376 Sum_probs=73.0
Q ss_pred CCCcEEEecCCCcc---hHHHHHHHHHhcCCEEecc-cCCCCcEEEecCC----CChhHHHHHhcCCeEeccccHHHHHh
Q 011171 1 MESVVATVSGYHGT---ERFNLIKLISYSGASYVGT-MSKSTTHLVCWKF----EGEKHSLAKKFRTIIVNHQWVEDCIK 72 (492)
Q Consensus 1 ~~g~~I~vSG~~~~---er~~i~~li~~~Gg~~~~~-lt~~vTHLV~~~~----~~~K~~~A~~~~i~IVs~~WL~dc~~ 72 (492)
|+|+++|+.-++.- .-.+|.+.+...||+-... +.-++||+||+.. .....-.|+-.+||||.|.|+..|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 67899999877643 3467889999999987554 4568999999853 34567778888999999999999999
Q ss_pred hcCCCCCCCcccCCCCcc
Q 011171 73 QHRRLPERPYMLQSGQEI 90 (492)
Q Consensus 73 ~~~~l~e~~Y~l~s~~~~ 90 (492)
..+.+....|.+..++..
T Consensus 242 ekrivgvrgfyldadqsi 259 (290)
T 4gns_A 242 EKRIVGVRGFYLDADQSI 259 (290)
T ss_dssp TTSCCCSGGGBTTSCGGG
T ss_pred hheeeeeeeEEEcccHHH
Confidence 999999999998776644
No 121
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.46 E-value=0.00012 Score=70.76 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=65.4
Q ss_pred CCCcEEEecCCCcchHHHHHHHHHhcCCEEecccC----CCCcEEEecCC----C--ChhHHHHHhcCCeEeccccHHHH
Q 011171 1 MESVVATVSGYHGTERFNLIKLISYSGASYVGTMS----KSTTHLVCWKF----E--GEKHSLAKKFRTIIVNHQWVEDC 70 (492)
Q Consensus 1 ~~g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt----~~vTHLV~~~~----~--~~K~~~A~~~~i~IVs~~WL~dc 70 (492)
|.|..|.+.+- ......+..+|+..||++..... ...||++.... . ..++..+.+.||+||+++||.|+
T Consensus 136 F~g~~v~l~~~-~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~ 214 (235)
T 3al2_A 136 FSGWKVILHVD-QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADY 214 (235)
T ss_dssp TTTCEEEEECC-HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHH
T ss_pred CCCcEEEEecC-CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHH
Confidence 67888888763 34457899999999999987653 34689877531 1 13577777779999999999999
Q ss_pred HhhcCCCCCCCccc
Q 011171 71 IKQHRRLPERPYML 84 (492)
Q Consensus 71 ~~~~~~l~e~~Y~l 84 (492)
+-+....+.+.|.+
T Consensus 215 i~~~~~~~~~~y~l 228 (235)
T 3al2_A 215 LMQESPPHVENYCL 228 (235)
T ss_dssp HHCSSCCCHHHHBC
T ss_pred HhcCCCCChhheEc
Confidence 99999999999987
No 122
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=7.3e-05 Score=62.06 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=39.1
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
...|.+|.....+..++.|+.|.. +||.+|++||+ +.|+|+.|...
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~-~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDD-NYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCC-EECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCc-hhccccCCCCcccCCCCCcCCccCcCc
Confidence 467999998776678999999996 99999999765 47999999653
No 123
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=97.44 E-value=6.8e-05 Score=58.07 Aligned_cols=47 Identities=23% Similarity=0.675 Sum_probs=38.2
Q ss_pred ccccccccCcc--CCcccccccccCCCCccccccCCCCC--------CCCCCccchhh
Q 011171 436 LLEACIECRSQ--EPQDLLIRCHLCQSRCIHCYCMDPPL--------DPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~--~~e~~~~~C~~C~~~~~Hs~C~~~pl--------~~w~C~~C~e~ 483 (492)
....|.+|... .....+++|+.|.. +||.+|.+||+ +.|+|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~-~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQ-GYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCC-EEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCh-HHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 44679999976 33478999999996 99999999754 56999999653
No 124
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.40 E-value=5.3e-05 Score=55.71 Aligned_cols=43 Identities=35% Similarity=0.970 Sum_probs=36.3
Q ss_pred cccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
.|.+|+....+..++.|+.|.. +||.+|++||+ +.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~-~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNK-AFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCC-EECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCCh-hhCcccCCCCcCCCCCCcEECcCccc
Confidence 4999998766678999999995 99999998654 5799999964
No 125
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.39 E-value=5.8e-05 Score=76.44 Aligned_cols=55 Identities=24% Similarity=0.579 Sum_probs=40.4
Q ss_pred Cccccccccccccc----ccE---eecCCCcccHHhHHHHHHhhccCCC-----ccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSS----TRG---VLACGHRFCYSCIQNWADHMASVRK-----ISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~----p~~---~l~CgH~FC~~CI~~~l~~~~~~~~-----~~~CP~Cr~~~~~ 393 (492)
....|+||+..+.+ |.. ...|+|.||..||.+|+........ ...||.||++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45689999999886 211 2479999999999999987421111 1479999998764
No 126
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.39 E-value=7.2e-05 Score=61.57 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=38.3
Q ss_pred cccccccCccCC--cccccccccCCCCccccccCCCCCC---------CCCCccchhhh
Q 011171 437 LEACIECRSQEP--QDLLIRCHLCQSRCIHCYCMDPPLD---------PWTCIHCKDLQ 484 (492)
Q Consensus 437 ~~~C~~C~~~~~--e~~~~~C~~C~~~~~Hs~C~~~pl~---------~w~C~~C~e~~ 484 (492)
...|.+|..... ...+++|+.|.. +||.+|++||+. .|+|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHN-LYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCC-EEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCC-eEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 467999997643 358999999996 999999997753 59999997553
No 127
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.37 E-value=0.00033 Score=67.84 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=66.7
Q ss_pred CcEEEecCCCcchHHH-HHHHHHhcCCEEecccC--CCCcEEEecC-CCChhHHHHHhcCC--eEeccccHHHHHhh---
Q 011171 3 SVVATVSGYHGTERFN-LIKLISYSGASYVGTMS--KSTTHLVCWK-FEGEKHSLAKKFRT--IIVNHQWVEDCIKQ--- 73 (492)
Q Consensus 3 g~~I~vSG~~~~er~~-i~~li~~~Gg~~~~~lt--~~vTHLV~~~-~~~~K~~~A~~~~i--~IVs~~WL~dc~~~--- 73 (492)
.+.+.+||+...+... =.+.+..+|-++..+++ ..++||||.+ ..+.||-.|.+.+- .||+|+||.+|++.
T Consensus 22 ~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~ 101 (256)
T 3t7k_A 22 DLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHS 101 (256)
T ss_dssp CEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC-
T ss_pred eEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhc
Confidence 5788999998222222 24567888999999996 4899999997 78999999999865 49999999999998
Q ss_pred cC------CCCCCCcccC
Q 011171 74 HR------RLPERPYMLQ 85 (492)
Q Consensus 74 ~~------~l~e~~Y~l~ 85 (492)
++ .++.++|.+.
T Consensus 102 ~~~~~~~~~l~~~dY~L~ 119 (256)
T 3t7k_A 102 KKDKLSQININLFDYEIN 119 (256)
T ss_dssp ------CCCCCSSTTBCT
T ss_pred CCcccccccCChhhccCC
Confidence 77 8889999873
No 128
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.35 E-value=6.6e-05 Score=59.36 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=38.9
Q ss_pred cccccccccCccC--CcccccccccCCCCccccccCCCC---CCCCCCccchhh
Q 011171 435 SLLEACIECRSQE--PQDLLIRCHLCQSRCIHCYCMDPP---LDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~--~e~~~~~C~~C~~~~~Hs~C~~~p---l~~w~C~~C~e~ 483 (492)
.....|.+|.... .+..++.|+.|.. +||.+|.+++ .+.|+|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~-~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNL-AVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCC-EEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCC-ccccccCCCCcCCCCCcCCccCcCc
Confidence 3347799998764 5578999999996 9999999954 567999999653
No 129
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=58.83 Aligned_cols=42 Identities=33% Similarity=1.016 Sum_probs=36.6
Q ss_pred cccccCccCCcccccccccCCCCccccccCCCCC-----C-CCCCccch
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----D-PWTCIHCK 481 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~-~w~C~~C~ 481 (492)
.|.+|........++.|+.|.. +||.+|++||+ + .|+|+.|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNV-AYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCC-EEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCc-cccccccCCCccCCCCCCCcCCcCcc
Confidence 6999998766789999999996 99999999765 4 79999995
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.24 E-value=0.00016 Score=56.95 Aligned_cols=42 Identities=38% Similarity=1.068 Sum_probs=36.2
Q ss_pred cccccCccCCcccccccccCCCCccccccCCCCC-----C-CCCCccch
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----D-PWTCIHCK 481 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~-~w~C~~C~ 481 (492)
.|.+|+.......++.|+.|.. +||.+|++||+ + .|+|+.|.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred CCcCCCCcCCCCCEEEcCCCCC-ceecccCCCCcCCCCCCCCcCCcCcc
Confidence 5888987766789999999995 99999999765 4 89999996
No 131
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.22 E-value=0.00016 Score=58.05 Aligned_cols=42 Identities=38% Similarity=1.049 Sum_probs=36.8
Q ss_pred cccccCccCCcccccccccCCCCccccccCCCCCC-----C-CCCccch
Q 011171 439 ACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPLD-----P-WTCIHCK 481 (492)
Q Consensus 439 ~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl~-----~-w~C~~C~ 481 (492)
.|.+|.....+..++.|+.|.. +||.+|++||+. . |+|+.|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~-~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeCCCCC-ccCcccCCCcccCCCCCCceECcCcc
Confidence 5999998877789999999996 999999997753 4 9999996
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.17 E-value=0.00015 Score=59.69 Aligned_cols=47 Identities=26% Similarity=0.700 Sum_probs=38.8
Q ss_pred ccccccccCccC--CcccccccccCCCCccccccCCCC---CCCCCCccchhh
Q 011171 436 LLEACIECRSQE--PQDLLIRCHLCQSRCIHCYCMDPP---LDPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~--~e~~~~~C~~C~~~~~Hs~C~~~p---l~~w~C~~C~e~ 483 (492)
....|.+|.... .++.+++|+.|.. +||.+|.+|+ .+.|+|+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~-~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNL-AVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCC-CCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCc-hhhcccCCCCccCCCceECccccCc
Confidence 347799999764 5568999999996 9999999964 567999999654
No 133
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.14 E-value=0.00042 Score=52.99 Aligned_cols=44 Identities=34% Similarity=0.871 Sum_probs=35.9
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
....|.+|... ..++.|+.|.. +||.+|++||+ +.|+|+.|...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~-~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPS-SYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCC-CBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCH-HHcccccCCCcCcCCCCccCChhhcCc
Confidence 34679999865 36999999996 99999999764 46999999643
No 134
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.12 E-value=0.00018 Score=57.20 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=39.0
Q ss_pred cccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
.....|.+|........++.|+.|.. +||.+|+++++ ..|+|+.|...
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~-wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDD-WYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSS-EEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCc-ccccccCCCCccCCCCCCEEChhccCc
Confidence 34477999998776567999999995 99999999543 57999999654
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.09 E-value=0.00029 Score=54.86 Aligned_cols=42 Identities=24% Similarity=0.548 Sum_probs=34.4
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
...|.+|.... .++.|+.|.. .||.+|++||+ +.|+|+.|..
T Consensus 12 ~~~C~vC~~~~---~ll~Cd~C~~-~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDGT---DVLRCTHCAA-AFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCCT---TCEECSSSCC-EECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCCCC---eEEECCCCCC-ceecccCCCccCcCCCCCEECccccC
Confidence 35699998653 5899999995 99999998665 4699999964
No 136
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.00032 Score=52.62 Aligned_cols=43 Identities=37% Similarity=0.956 Sum_probs=35.5
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
....|.+|... ..++.|+.|.. +||.+|++||+ +.|+|+.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~-~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSR-VYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSC-EECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCc-ceECccCCCCcCCCCCCceEChhhhC
Confidence 34679999875 36899999995 99999999765 4699999964
No 137
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.96 E-value=0.0004 Score=53.87 Aligned_cols=44 Identities=34% Similarity=0.861 Sum_probs=36.2
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
....|.+|... ..++.|+.|.. +||.+|++||+ +.|+|+.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~-~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPR-AFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCC-EECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCCh-hhcccccCCCcCcCCCCCeECccccCc
Confidence 34679999875 36999999996 99999999764 47999999654
No 138
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.93 E-value=0.00071 Score=55.55 Aligned_cols=45 Identities=31% Similarity=0.812 Sum_probs=36.5
Q ss_pred cccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
.....|.+|.... .++.|+.|.. .||.+|+.||+ +.|+|+.|...
T Consensus 23 ~n~~~C~vC~~~g---~LL~CD~C~~-~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG---DLVMCNQCEF-CFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS---CCEECTTSSC-EECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC---CEEECCCCCC-ceecccCCCCCCCCcCCCcCCccccCC
Confidence 3446799999763 5899999996 99999998654 57999999744
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.93 E-value=0.00037 Score=66.83 Aligned_cols=43 Identities=37% Similarity=1.020 Sum_probs=33.7
Q ss_pred ccccccCccCCcccccccccCCCCccccccCCCCC-----C-CCCCccch
Q 011171 438 EACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----D-PWTCIHCK 481 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~-~w~C~~C~ 481 (492)
..|.+|+.......++.|+.|.. ++|.+|++||+ + .|+|+.|.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~-~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCC-EECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred CCCcCCCCCCCCCCeEEcCCCCc-ceeCccCCCCcccCCCCCCCCCcCCc
Confidence 35999998777779999999996 99999999765 4 79999995
No 140
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=96.91 E-value=0.0011 Score=66.52 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=53.4
Q ss_pred cEEEecCCCcchHHHHHHHHHhcCCEEeccc-CCCCcEEEecCCCC----hhHHHHHhcCCeEeccccHHHHHhh
Q 011171 4 VVATVSGYHGTERFNLIKLISYSGASYVGTM-SKSTTHLVCWKFEG----EKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 4 ~~I~vSG~~~~er~~i~~li~~~Gg~~~~~l-t~~vTHLV~~~~~~----~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
+++++++ ...+.++.+.++.+||.++ .+ +..|||||..+-.+ .|.-.|+-.|+|||+++||.+....
T Consensus 116 ~Vl~~Ss--ke~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 116 MCIQFDN--PEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp CCEEESC--HHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred eEEEecC--HHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 4566632 2246679999999999999 77 77899999975444 4599999999999999999997543
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.87 E-value=0.00052 Score=52.16 Aligned_cols=43 Identities=37% Similarity=0.958 Sum_probs=35.5
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchhh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKDL 483 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e~ 483 (492)
...|.+|+.. ..++.|+.|.. +||.+|++||+ +.|+|+.|...
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~-~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSR-VYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSC-EECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCc-CEECCcCCCCcCCCCCCceEChhccCh
Confidence 3569999875 36999999995 99999999765 46999999654
No 142
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.83 E-value=0.00074 Score=51.57 Aligned_cols=43 Identities=30% Similarity=0.895 Sum_probs=35.7
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccchh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCKD 482 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~e 482 (492)
....|.+|... ..++.|+.|.. +||.+|++||+ +.|+|+.|..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~-~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPR-AYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSC-EEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCCh-hhhhhccCCCCCCCCCCceECccccc
Confidence 34679999875 37999999996 99999999754 5699999975
No 143
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0012 Score=54.85 Aligned_cols=77 Identities=10% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCCcEEEecC----C-CcchHHHHHHHHHhcCCEEecccCCCC--cEEEecCCCChhHHHHHhcCCeEeccccHHHHHhh
Q 011171 1 MESVVATVSG----Y-HGTERFNLIKLISYSGASYVGTMSKST--THLVCWKFEGEKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 1 ~~g~~I~vSG----~-~~~er~~i~~li~~~Gg~~~~~lt~~v--THLV~~~~~~~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
|+|+.+.+.- + +..+..+|..+|...||.+...+.++. .+.|.+..+.. ++|.|++.+|.+|+.+
T Consensus 12 F~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t--------~LpTVtpTYI~aC~~~ 83 (106)
T 2l42_A 12 LSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT--------NLPTVTPTYIKACCQS 83 (106)
T ss_dssp SCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC--------SSSBCCTTHHHHHHHS
T ss_pred ccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC--------CCccccHHHHHHHHhc
Confidence 5566666643 2 234678999999999999999997544 35555543322 8999999999999999
Q ss_pred cCCCCCCCcccC
Q 011171 74 HRRLPERPYMLQ 85 (492)
Q Consensus 74 ~~~l~e~~Y~l~ 85 (492)
+.+|+..+|++.
T Consensus 84 nTLLnv~~YLvp 95 (106)
T 2l42_A 84 NSLLNMENYLVP 95 (106)
T ss_dssp TTSCGGGGCCBC
T ss_pred CceecccccccC
Confidence 999999999984
No 144
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=96.49 E-value=0.0015 Score=53.90 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=36.4
Q ss_pred cccccccccCccCCcccccccccCC--CCccccccCC---CCCCCCCCcc-chhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHLCQ--SRCIHCYCMD---PPLDPWTCIH-CKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~C~--~~~~Hs~C~~---~pl~~w~C~~-C~e~ 483 (492)
...++| +|...... .++.|+.|+ ..|+|..|++ +|.+.|+|+. |.++
T Consensus 24 ~~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp CCSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred CCCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcch
Confidence 445778 89876553 589999966 2399999999 4557899999 9765
No 145
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=96.44 E-value=0.0019 Score=54.05 Aligned_cols=43 Identities=26% Similarity=0.644 Sum_probs=35.3
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCCC----CCCCCccch
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL----DPWTCIHCK 481 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl----~~w~C~~C~ 481 (492)
.+.| +|+.......++.|+.|.. ++|..|.++++ ..|+|+.|.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~-w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSV-WQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCB-EEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCC-cCcCcCCCCCccCCCCCEECCCCc
Confidence 3667 7887766678999999995 99999999654 359999996
No 146
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=96.33 E-value=0.0037 Score=49.20 Aligned_cols=47 Identities=23% Similarity=0.597 Sum_probs=36.5
Q ss_pred cccccccccCccCCccccccccc--CCCCccccccCC---CCCCCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
.....| +|..... ..++.|+. |...++|..|++ +|.+.|+|+.|...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 445778 7988655 46999999 763499999999 45578999999654
No 147
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.33 E-value=0.004 Score=51.41 Aligned_cols=48 Identities=25% Similarity=0.637 Sum_probs=37.1
Q ss_pred CcccccccccCccCCccccccccc--CCCCccccccCC---CCCCCCCCccchhh
Q 011171 434 PSLLEACIECRSQEPQDLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 434 ~~~~~~C~~C~~~~~e~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
.....+| +|..... ..++.|+. |...|+|..|++ +|.+.|+|+.|...
T Consensus 33 ~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 3455778 9998655 46999999 663499999999 44578999999654
No 148
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=96.29 E-value=0.0014 Score=49.89 Aligned_cols=46 Identities=24% Similarity=0.630 Sum_probs=35.2
Q ss_pred cccccccccCccCCccccccccc--CCCCccccccCC---CCCCCCCCccchh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKD 482 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e 482 (492)
.....| +|+.... ..++.|+. |...++|..|++ +|.+.|+|+.|..
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 345778 8988655 47999999 653499999999 4557899999964
No 149
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=96.07 E-value=0.0021 Score=49.23 Aligned_cols=47 Identities=23% Similarity=0.604 Sum_probs=35.6
Q ss_pred cccccccccCccCCccccccccc--CCCCccccccCC---CCCCCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
.....| +|..... ..++.|+. |...++|..|++ +|.+.|+|+.|...
T Consensus 9 ~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 445778 8988655 46899999 553499999999 45678999999753
No 150
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=96.00 E-value=0.0023 Score=48.52 Aligned_cols=46 Identities=26% Similarity=0.648 Sum_probs=35.2
Q ss_pred cccccccccCccCCccccccccc--CCCCccccccCC---CCCCCCCCccchh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHL--CQSRCIHCYCMD---PPLDPWTCIHCKD 482 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~--C~~~~~Hs~C~~---~pl~~w~C~~C~e 482 (492)
.....| +|+.... ..++.|+. |...++|..|.+ +|.+.|+|+.|..
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 344778 8988655 46899999 763399999999 4557899999964
No 151
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.71 E-value=0.0055 Score=59.30 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=39.4
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
...|.||.+....-.....|+|.||..|+..|++.. ....||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~----~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN----AEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC----SSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC----CCCCCCCCCCCCC
Confidence 568999999998653344599999999999999872 3669999998654
No 152
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=95.31 E-value=0.0097 Score=46.37 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=37.0
Q ss_pred cccccccccCccCCcccccccccCCCCccccccCCCCC----CCCCCccchh
Q 011171 435 SLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL----DPWTCIHCKD 482 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl----~~w~C~~C~e 482 (492)
...+.| +|+.......++-|+.|.. |+|..|.+... +.|+|+.|..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~-WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHT-WIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCC-EEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCc-cccccccCcCcccCCCcEECCCCCC
Confidence 445778 9998766567999999996 99999999432 5699999964
No 153
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.19 E-value=0.008 Score=47.14 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=35.2
Q ss_pred ccccccccCccCCcccccccccCC--CCccccccCC---CCCCCCCCccchhh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQ--SRCIHCYCMD---PPLDPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~--~~~~Hs~C~~---~pl~~w~C~~C~e~ 483 (492)
..++| +|..... ..++.|+.|+ ..|+|..|.+ +|.+.|+|+.|...
T Consensus 5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 34667 4887655 3789999975 4599999999 45678999999654
No 154
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.97 E-value=0.018 Score=48.83 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.2
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCCC-----CCCCCccch
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPPL-----DPWTCIHCK 481 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~pl-----~~w~C~~C~ 481 (492)
....|.+|........++.|+.|.. .||.+|++++. ..|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~-~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQ-HYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCC-EECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCC-CcChHHhCCccccccccCccCCcCC
Confidence 4467999998765456799999996 99999999553 469999874
No 155
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.048 Score=49.13 Aligned_cols=65 Identities=12% Similarity=-0.062 Sum_probs=48.4
Q ss_pred CcEEEecCCCcc-----hH-------HHHHHHHHhcCCEEecccCCCCcEEEecCCCC--------hhHHHHHhcCCeEe
Q 011171 3 SVVATVSGYHGT-----ER-------FNLIKLISYSGASYVGTMSKSTTHLVCWKFEG--------EKHSLAKKFRTIIV 62 (492)
Q Consensus 3 g~~I~vSG~~~~-----er-------~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~~--------~K~~~A~~~~i~IV 62 (492)
+.+|+|-+.... .+ ..++..+..+||++..-|+..|||||+..+.. +-+..|.+.+++|=
T Consensus 62 ~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~~mKVW 141 (160)
T 3qbz_A 62 DSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW 141 (160)
T ss_dssp HCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHTTCEEE
T ss_pred CcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHcCceec
Confidence 578888876432 12 33556778999999999999999999986433 34788988899986
Q ss_pred ccccH
Q 011171 63 NHQWV 67 (492)
Q Consensus 63 s~~WL 67 (492)
+.+=+
T Consensus 142 ~yeK~ 146 (160)
T 3qbz_A 142 SYEKA 146 (160)
T ss_dssp EHHHH
T ss_pred chHHH
Confidence 55433
No 156
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=94.75 E-value=0.019 Score=48.81 Aligned_cols=43 Identities=26% Similarity=0.764 Sum_probs=34.9
Q ss_pred cccccccccCccCCcccccccc--cCCCCccccccCC---CCCCCCCCccch
Q 011171 435 SLLEACIECRSQEPQDLLIRCH--LCQSRCIHCYCMD---PPLDPWTCIHCK 481 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~--~C~~~~~Hs~C~~---~pl~~w~C~~C~ 481 (492)
.....|.+|... ..++.|+ .|.. +||.+|++ +|.+.|+|+.|.
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~-~fH~~Cl~L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPK-AYHLLCLNLTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCC-EECTGGGTCSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCc-ccccccCcCCcCCCCCEECCCCC
Confidence 345779999854 3699999 8996 99999998 667889999774
No 157
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.47 E-value=0.012 Score=48.65 Aligned_cols=32 Identities=16% Similarity=0.532 Sum_probs=26.4
Q ss_pred Ccccccccccc-cccccEe--ecCCCcccHHhHHHH
Q 011171 339 GELSCVICWTE-FSSTRGV--LACGHRFCYSCIQNW 371 (492)
Q Consensus 339 e~l~C~IC~e~-~~~p~~~--l~CgH~FC~~CI~~~ 371 (492)
+++.|+||.+. +..+ +. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~a-v~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-VKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBC-CEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCc-eEECCcCChHHhHHHCHHH
Confidence 46899999976 5566 44 899999999999873
No 158
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.41 E-value=0.02 Score=43.70 Aligned_cols=47 Identities=21% Similarity=0.606 Sum_probs=36.5
Q ss_pred ccccccccCccCC-cccccccccCCCCccccccCCCC------CCCCCCccchhh
Q 011171 436 LLEACIECRSQEP-QDLLIRCHLCQSRCIHCYCMDPP------LDPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~~-e~~~~~C~~C~~~~~Hs~C~~~p------l~~w~C~~C~e~ 483 (492)
....|.+|..... ...++-|+.|.. |+|..|.+.+ ...|+|+.|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEM-WFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCC-EEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCC-CCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3477999987642 357889999995 9999999943 357999999643
No 159
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.07 Score=46.81 Aligned_cols=58 Identities=17% Similarity=0.027 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCEEecccCCCCcEEEecCCC--------ChhHHHHHhcCCeEeccccHHHHHhh
Q 011171 16 RFNLIKLISYSGASYVGTMSKSTTHLVCWKFE--------GEKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 16 r~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~--------~~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
+..++..+..+||++++-|+..|||+|+..+. ..-...|.+.|++|=+.+=|..=+..
T Consensus 32 ~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 32 RDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 46688889999999999999999999998643 33468899999999887777655554
No 160
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=94.06 E-value=0.029 Score=43.49 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=35.0
Q ss_pred cccccccccCccCCcccccccc--cCCCCccccccCCCCC---------CCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCH--LCQSRCIHCYCMDPPL---------DPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~--~C~~~~~Hs~C~~~pl---------~~w~C~~C~e~ 483 (492)
...+.| +|+.......++.|+ .|.. |+|..|.+... ..|+|+.|+..
T Consensus 8 e~~v~C-~C~~~~~~g~mI~CD~~~C~~-W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMIQCEDQRCQV-WQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp SCEECC-TTCCCSCCSCEEECSCTTTCE-EEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEEEECCCCCCC-eEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 344778 798765556889998 5995 99999998321 25999999743
No 161
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=94.01 E-value=0.035 Score=52.91 Aligned_cols=81 Identities=9% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCCcEEEecCCC--cchHHHHHHHHHhcCCEEecccC-----------CCCcEEEecCCCCh---hHHHHHh--cCCeEe
Q 011171 1 MESVVATVSGYH--GTERFNLIKLISYSGASYVGTMS-----------KSTTHLVCWKFEGE---KHSLAKK--FRTIIV 62 (492)
Q Consensus 1 ~~g~~I~vSG~~--~~er~~i~~li~~~Gg~~~~~lt-----------~~vTHLV~~~~~~~---K~~~A~~--~~i~IV 62 (492)
|+|+.|++++.. ...+..|..+|+..||++.. .. ..-.+||+...... ++..... .+++||
T Consensus 114 F~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~-~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~ 192 (220)
T 3l41_A 114 LEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST-LNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQ 192 (220)
T ss_dssp TTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE-ECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEE
T ss_pred hhheeEEEeccccCCCCCceEEEEEecCCcEech-hhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEEe
Confidence 789999999965 67789999999999999988 21 12256666632221 1222221 255699
Q ss_pred ccccHHHHHhhcCCCCCCCcc
Q 011171 63 NHQWVEDCIKQHRRLPERPYM 83 (492)
Q Consensus 63 s~~WL~dc~~~~~~l~e~~Y~ 83 (492)
+.+||.+++-+.+ ++.+++.
T Consensus 193 ~~e~ll~~il~q~-l~~~~~~ 212 (220)
T 3l41_A 193 NYDWLIKTVLRQE-IDVNDRI 212 (220)
T ss_dssp EHHHHHHHHHHTC-CCTTCCB
T ss_pred chhHHHHHHHHHH-cCcchHH
Confidence 9999999999666 4444444
No 162
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.75 E-value=0.032 Score=44.43 Aligned_cols=47 Identities=23% Similarity=0.570 Sum_probs=37.3
Q ss_pred cccccccccCccCCcccccccc--cCCCCccccccCCCC----------CCCCCCccchhh
Q 011171 435 SLLEACIECRSQEPQDLLIRCH--LCQSRCIHCYCMDPP----------LDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~e~~~~~C~--~C~~~~~Hs~C~~~p----------l~~w~C~~C~e~ 483 (492)
...+.| +|+.......++-|+ .|.. |+|..|.+.+ ...|+|+.|...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCc-cccCEEEccccccccccccCCCCEECCCCCcc
Confidence 455788 899875556899999 9997 9999999832 146999999754
No 163
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.28 E-value=0.034 Score=43.93 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=36.2
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCCC----------CCCCCCccchhh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPP----------LDPWTCIHCKDL 483 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~p----------l~~w~C~~C~e~ 483 (492)
.+.| +|........++-|+.|.. |+|..|.+.. ...|+|+.|...
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~-WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEE-WFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCC-EEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCC-cEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4778 8998766557899999995 9999999843 257999999754
No 164
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.15 Score=45.58 Aligned_cols=57 Identities=16% Similarity=0.000 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCEEecccCCCCcEEEecCCC--------ChhHHHHHhcCCeEeccccHHHHHhh
Q 011171 17 FNLIKLISYSGASYVGTMSKSTTHLVCWKFE--------GEKHSLAKKFRTIIVNHQWVEDCIKQ 73 (492)
Q Consensus 17 ~~i~~li~~~Gg~~~~~lt~~vTHLV~~~~~--------~~K~~~A~~~~i~IVs~~WL~dc~~~ 73 (492)
..|+..+..+||++++-|+..|||+|+..+. .+-...|++.|++|=+.+=|..=+..
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 4577888999999999999999999998543 34568899999999887777665554
No 165
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.14 E-value=0.048 Score=42.69 Aligned_cols=47 Identities=19% Similarity=0.609 Sum_probs=35.7
Q ss_pred cccccccccCccCC-cccccccccCCCCccccccCCCC-----CCCCCCccchhh
Q 011171 435 SLLEACIECRSQEP-QDLLIRCHLCQSRCIHCYCMDPP-----LDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~-e~~~~~C~~C~~~~~Hs~C~~~p-----l~~w~C~~C~e~ 483 (492)
...+.| +|..... ...++-|+.|.. |+|..|.+.. ...|+|+.|...
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~-W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGV-WHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCE-EEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCC-ccCCeeeccCccccCCCcEECCCccCC
Confidence 345788 6987643 347999999995 9999999843 356999999753
No 166
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.21 E-value=0.055 Score=43.10 Aligned_cols=45 Identities=29% Similarity=0.729 Sum_probs=35.1
Q ss_pred cccccccCccCC-cccccccccCCCCccccccCCCC------CCCCCCccchhh
Q 011171 437 LEACIECRSQEP-QDLLIRCHLCQSRCIHCYCMDPP------LDPWTCIHCKDL 483 (492)
Q Consensus 437 ~~~C~~C~~~~~-e~~~~~C~~C~~~~~Hs~C~~~p------l~~w~C~~C~e~ 483 (492)
.+.| +|....+ ...++-|+.|.. |+|..|.+.. ...|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQD-WFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCC-EEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCC-cEEeeecCcccccccCCCeEECCCcccc
Confidence 3667 8987643 467889999995 9999999832 367999999754
No 167
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=91.71 E-value=0.043 Score=50.06 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=35.9
Q ss_pred cccccccccCccCC-cccccccccCCCCccccccCCCC------CCCCCCccchhh
Q 011171 435 SLLEACIECRSQEP-QDLLIRCHLCQSRCIHCYCMDPP------LDPWTCIHCKDL 483 (492)
Q Consensus 435 ~~~~~C~~C~~~~~-e~~~~~C~~C~~~~~Hs~C~~~p------l~~w~C~~C~e~ 483 (492)
.....| +|+.... ...++-|+.|.. |+|..|.+.+ .+.|+|+.|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~-WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQN-WYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCC-EEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCc-hhChhhcCCchhhccCccCeecCCCcch
Confidence 345789 9987632 346889999995 9999999832 467999999754
No 168
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=91.69 E-value=0.04 Score=46.51 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=34.7
Q ss_pred ccccccCccC-Ccccccccc-cCCCCccccccCCCC-----------CCCCCCccchhh
Q 011171 438 EACIECRSQE-PQDLLIRCH-LCQSRCIHCYCMDPP-----------LDPWTCIHCKDL 483 (492)
Q Consensus 438 ~~C~~C~~~~-~e~~~~~C~-~C~~~~~Hs~C~~~p-----------l~~w~C~~C~e~ 483 (492)
-.|.+|...- +...++.|+ .|.. |+|.-|.+.. ...|+|+.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~-WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQK-WFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCC-EEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCccc-ccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 4599998762 224688898 9995 9999999944 267999999754
No 169
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.57 E-value=0.065 Score=44.15 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=37.4
Q ss_pred cccccccCccCCcccccccccCCCCccccccCC---C---------------C-----CCCCCCccc-hhhhccccccC
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMD---P---------------P-----LDPWTCIHC-KDLQMLYNRSN 491 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~---~---------------p-----l~~w~C~~C-~e~~~~yCr~~ 491 (492)
.+.|++|......+++.+|..|+. +||.. . | +....|+.| .+.+++||.+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~----~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~ 77 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEV----SYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTD 77 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTE----EECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTT
T ss_pred CCCCcCCCCCCCCCceEECCcCCh----HHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCC
Confidence 367999986433468999999997 66654 1 1 123689999 58899999864
No 170
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=91.21 E-value=0.088 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.622 Sum_probs=31.8
Q ss_pred ccCccCCcccccccccCCCCccccccCCCC----CCCCCCccchh
Q 011171 442 ECRSQEPQDLLIRCHLCQSRCIHCYCMDPP----LDPWTCIHCKD 482 (492)
Q Consensus 442 ~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~p----l~~w~C~~C~e 482 (492)
+|+.......++-|+.|.. ++|..|.+.. .+.|+|+.|.+
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~-W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHT-WIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCC-EEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCc-cccccccCCCcccCCCcEECcCCCC
Confidence 6776655558899999996 9999999933 25799999964
No 171
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.04 E-value=0.037 Score=42.65 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=34.3
Q ss_pred ccccccCccC-Ccccccccc-cCCCCccccccCCCC-----------CCCCCCccch
Q 011171 438 EACIECRSQE-PQDLLIRCH-LCQSRCIHCYCMDPP-----------LDPWTCIHCK 481 (492)
Q Consensus 438 ~~C~~C~~~~-~e~~~~~C~-~C~~~~~Hs~C~~~p-----------l~~w~C~~C~ 481 (492)
-.|.+|.... +...++.|+ .|.. |||..|.+.. ...|+|+.|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~-WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQK-WFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCC-EEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccc-cCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 5699999763 345788999 9995 9999999943 3379999985
No 172
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=90.67 E-value=0.077 Score=45.30 Aligned_cols=43 Identities=28% Similarity=0.633 Sum_probs=33.0
Q ss_pred ccccccCccCC-------cccccccccCCCCccccccCCCC--------CCCCCCccch
Q 011171 438 EACIECRSQEP-------QDLLIRCHLCQSRCIHCYCMDPP--------LDPWTCIHCK 481 (492)
Q Consensus 438 ~~C~~C~~~~~-------e~~~~~C~~C~~~~~Hs~C~~~p--------l~~w~C~~C~ 481 (492)
..|.+|..... ...++.|+.|.. .||.+|++++ ...|+|++|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~-~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGR-SGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCC-EECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCC-ccchhhCCChhhhhhccCCCccCccccC
Confidence 35888876542 248899999996 9999999865 2479988873
No 173
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.56 E-value=0.14 Score=41.24 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=35.7
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCCC-----------------CCCCCCccchhh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDPP-----------------LDPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~p-----------------l~~w~C~~C~e~ 483 (492)
....|.+|..-.. ..++-|..|. |.||..|+.++ ..-|.|..|..+
T Consensus 14 ~D~~C~VC~~~t~-~~l~pCRvC~-RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTA-ESLFPCRVCT-RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCS-SCCSSCSSSS-SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCcccCccccccc-cceecccccc-ccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 4578999985543 6889999999 59999999721 224999999766
No 174
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.45 E-value=0.073 Score=38.94 Aligned_cols=43 Identities=21% Similarity=0.552 Sum_probs=32.5
Q ss_pred ccccccCccCC-cccccccc-cCCCCccccccCCCC-----CCCCCCccch
Q 011171 438 EACIECRSQEP-QDLLIRCH-LCQSRCIHCYCMDPP-----LDPWTCIHCK 481 (492)
Q Consensus 438 ~~C~~C~~~~~-e~~~~~C~-~C~~~~~Hs~C~~~p-----l~~w~C~~C~ 481 (492)
..|.+|....+ ...++.|+ .|.. |+|..|.+.. ...|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~-WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDE-WFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCC-EEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCc-cCcccccCCCccccCCCCEECCCCC
Confidence 45788887643 35688999 8995 9999999943 2679999874
No 175
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=90.20 E-value=0.025 Score=59.31 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCCcccccccchhhhhhhH
Q 011171 132 GSFLLNENLLPKFGKSENTSHKCKSKSFKRASKQ 165 (492)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (492)
+|+||++|| ++|||||+|+||..+|++=.
T Consensus 8 ~~~f~~~~~-----~~srlh~~~~w~~~~~~~~~ 36 (434)
T 2aq4_A 8 DPDFLTSYF-----AHSRLHHLSAWKANLKDKFL 36 (434)
T ss_dssp STTHHHHHH-----HHCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHH-----HHhHHHHHHHHHHHHHHHHH
Confidence 899999999 99999999999999998643
No 176
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.91 E-value=0.073 Score=45.25 Aligned_cols=43 Identities=30% Similarity=0.668 Sum_probs=33.0
Q ss_pred ccccccCccC------CcccccccccCCCCccccccCCC--------CCCCCCCccch
Q 011171 438 EACIECRSQE------PQDLLIRCHLCQSRCIHCYCMDP--------PLDPWTCIHCK 481 (492)
Q Consensus 438 ~~C~~C~~~~------~e~~~~~C~~C~~~~~Hs~C~~~--------pl~~w~C~~C~ 481 (492)
..|.+|.... ..+.++.|+.|.. .||.+|++. +...|+|+.|.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~-~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGN-SGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCC-EECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCC-CCCCchhcCCHHHHHHhhccccccccCC
Confidence 4588887542 2357999999996 999999973 24579999884
No 177
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=88.86 E-value=0.085 Score=41.59 Aligned_cols=44 Identities=25% Similarity=0.661 Sum_probs=33.4
Q ss_pred ccccccCccCC-cccccccccCCCCccccccCCCCC------CCCCCccchhh
Q 011171 438 EACIECRSQEP-QDLLIRCHLCQSRCIHCYCMDPPL------DPWTCIHCKDL 483 (492)
Q Consensus 438 ~~C~~C~~~~~-e~~~~~C~~C~~~~~Hs~C~~~pl------~~w~C~~C~e~ 483 (492)
+.| +|..... ...++-|+.|.. |+|..|.+... ..|+|+.|...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~-WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKD-WFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCC-EEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCC-CEecccccccccccCCCCEEECCCCccc
Confidence 445 8886532 357899999995 99999998332 46999999754
No 178
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.80 E-value=0.18 Score=41.49 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=40.5
Q ss_pred CCCCcccccccccccccccEeecC-CCcccHHhHHHHHHhhccCCCccCCCCCCcccccch
Q 011171 336 STSGELSCVICWTEFSSTRGVLAC-GHRFCYSCIQNWADHMASVRKISTCPLCKASFMSIT 395 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p~~~l~C-gH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~~ 395 (492)
..-.-+.|-.|+..... .+.| .|-+|..|+...+.. +..||+|+.++...-
T Consensus 24 s~~G~~nCKsCWf~~k~---LV~C~dHYLCl~CLtlmL~~------SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG---LVECNNHYLCLNCLTLLLSV------SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCSCCCCCCSSCSCCSS---EEECSSCEEEHHHHHHTCSS------SSEETTTTEECCCCS
T ss_pred cccCcccChhhccccCC---eeeecchhhHHHHHHHHHhh------ccCCcccCCcCCcce
Confidence 33456899999988764 4566 588999999998887 789999999877643
No 179
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.44 E-value=0.37 Score=38.19 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=24.6
Q ss_pred CcccccccccCccCCcccccccccCCCCccccccC
Q 011171 434 PSLLEACIECRSQEPQDLLIRCHLCQSRCIHCYCM 468 (492)
Q Consensus 434 ~~~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~ 468 (492)
+...+.|++|.......++.+|..|.. +||.
T Consensus 27 ~~~~v~C~~C~~~~~~~A~ksCl~C~~----s~C~ 57 (78)
T 2ffw_A 27 SAEKVLCQFCDQDPAQDAVKTCVTCEV----SYCD 57 (78)
T ss_dssp SSCCCBCSSCCSSSCCBCCEEETTTTE----EECH
T ss_pred CCCCccCCcCCCCCCCCCeeEccCccc----hhhh
Confidence 345699999987553579999999999 6665
No 180
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.19 E-value=0.52 Score=37.60 Aligned_cols=47 Identities=30% Similarity=0.755 Sum_probs=34.5
Q ss_pred CCcccccccccccccccEeecC----CCcccHHhHHHHHHhhccCCCccCCCC
Q 011171 338 SGELSCVICWTEFSSTRGVLAC----GHRFCYSCIQNWADHMASVRKISTCPL 386 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~C----gH~FC~~CI~~~l~~~~~~~~~~~CP~ 386 (492)
...+.|.+|.+.+.+. --..| .|.||+.|-...++.+. .+....||.
T Consensus 13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~-~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQG-ATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHH-SSSCCCCTT
T ss_pred CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcC-CCCcEECCC
Confidence 3468999999999986 23444 79999999999988753 233455654
No 181
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=85.96 E-value=0.054 Score=57.92 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCCCcccccccchhhhhhhHh
Q 011171 131 KGSFLLNENLLPKFGKSENTSHKCKSKSFKRASKQE 166 (492)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (492)
.+|+||++|+ +++||||.||||...++.-++
T Consensus 15 ~~~~f~~~~~-----~~srlh~~~t~~~~~~~~~~~ 45 (504)
T 3gqc_A 15 SDCNFISNFY-----SHSRLHHISMWKCELTEFVNT 45 (504)
T ss_dssp CHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHH-----hhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999 999999999999999877664
No 182
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.78 E-value=0.32 Score=43.20 Aligned_cols=42 Identities=26% Similarity=0.627 Sum_probs=34.3
Q ss_pred cccccccCccCCcccccccccCCCCccccccCCC------------CCCCCCCccchh
Q 011171 437 LEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDP------------PLDPWTCIHCKD 482 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~------------pl~~w~C~~C~e 482 (492)
...|.+|..+. .++.|+.|-. .||..|+.| |.++|.|+.|..
T Consensus 63 ~d~C~vC~~GG---~LlcCD~Cpr-~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGG---NLICCDFCHN-AFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCS---SEEECSSSCC-EEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCC---cEEeCCCCCC-eeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46799999874 5889999995 999999983 456899999963
No 183
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.40 E-value=1.6 Score=36.74 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=25.9
Q ss_pred CCcccccccccccccccEee--cCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 338 SGELSCVICWTEFSSTRGVL--ACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l--~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
.++..|.+|.+. .+-+.-- .|-..||..|+. +.. . ..+.+.||.|
T Consensus 13 ~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~--L~~-~-P~g~W~Cp~c 59 (107)
T 4gne_A 13 MHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN--LTQ-P-PYGKWECPWH 59 (107)
T ss_dssp SSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT--CSS-C-CSSCCCCGGG
T ss_pred CCCCCCCcCCCC-CcEeEECCCCCCcccccccCc--CCc-C-CCCCEECCCC
Confidence 456789999842 2211111 366788899985 222 1 1246678776
No 184
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=78.22 E-value=0.53 Score=30.54 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=17.1
Q ss_pred CCCCCCCCccc-hhhhcccccc
Q 011171 470 PPLDPWTCIHC-KDLQMLYNRS 490 (492)
Q Consensus 470 ~pl~~w~C~~C-~e~~~~yCr~ 490 (492)
|-.++|.|..| .+-.++|||.
T Consensus 14 pregdwcchkcvpegkrfycrd 35 (36)
T 4b2u_A 14 PREGDWCCHKCVPEGKRFYCRD 35 (36)
T ss_dssp GGGCCSSSSEEEEETTEEEEEC
T ss_pred CCccCeeeecccccCceeeecC
Confidence 45678999999 5559999986
No 185
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.84 E-value=1.5 Score=50.13 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=45.4
Q ss_pred CCCCCcccccccccccccccEeecCC-CcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 335 SSTSGELSCVICWTEFSSTRGVLACG-HRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 335 ~~~~e~l~C~IC~e~~~~p~~~l~Cg-H~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
...-+++.|||-++.+.+| +++|-| ++|-..+|.+|+.. ..+||.=|.++...
T Consensus 886 ~~iP~~F~cPIs~~lM~DP-VilpsG~~TydR~~I~~wl~~------~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP-VILPASKMNIDRSTIKAHLLS------DSTDPFNRMPLKLE 939 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGG
T ss_pred cCCcHHhCCcchhhHHhCC-eEcCCCCEEECHHHHHHHHhc------CCCCCCCCCCCCcc
Confidence 3445789999999999999 889998 69999999999987 56899998887653
No 186
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=74.24 E-value=0.68 Score=49.19 Aligned_cols=46 Identities=26% Similarity=0.646 Sum_probs=35.0
Q ss_pred ccccccccCccC-CcccccccccCCCCccccccCCCCC------CCCCCccchhh
Q 011171 436 LLEACIECRSQE-PQDLLIRCHLCQSRCIHCYCMDPPL------DPWTCIHCKDL 483 (492)
Q Consensus 436 ~~~~C~~C~~~~-~e~~~~~C~~C~~~~~Hs~C~~~pl------~~w~C~~C~e~ 483 (492)
..+.| +|+... ....++-|+.|.. |+|..|.+... +.|+|+.|...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKD-WFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCC-EEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCC-ceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34666 998753 2467889999996 99999999432 45999999755
No 187
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.16 E-value=0.83 Score=39.87 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=34.1
Q ss_pred ccccccccCccCCcccccccccCCCCccccccCCC------------CCCCCCCccchh
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQSRCIHCYCMDP------------PLDPWTCIHCKD 482 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~------------pl~~w~C~~C~e 482 (492)
....|.+|..+. .++.|+.|-. .+|..|+.+ |.++|.|..|..
T Consensus 56 ~~~~C~vC~dGG---~LlcCd~Cpr-~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGG---NLICCDFCHN-AFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCS---EEEECSSSSC-EEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCC---eeEecCCCch-hhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 346799998773 5889999994 899999874 456799999954
No 188
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=74.05 E-value=1.8 Score=33.15 Aligned_cols=49 Identities=14% Similarity=0.298 Sum_probs=33.8
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
...|.||.+.- +-+.--.|...||..|+...+.... .+.+.||.|....
T Consensus 12 ~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P--~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRP--GTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCC--SSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCC--CCCEECccccCCC
Confidence 45799998642 2112236899999999987765522 3478999997643
No 189
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=72.81 E-value=3 Score=42.56 Aligned_cols=53 Identities=19% Similarity=0.438 Sum_probs=39.1
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
.+.||+=...+..|+....|.|.-|++- ..|+... .....+.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~-~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQ-LQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHH-HHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHh-hcCCceeCCCCCcccCHH
Confidence 4899999999999977788999976653 3333331 124589999999877654
No 190
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=70.76 E-value=1.5 Score=46.71 Aligned_cols=34 Identities=24% Similarity=0.527 Sum_probs=27.5
Q ss_pred cccccccccCCCCccccccCCCC------CCCCCCccchhh
Q 011171 449 QDLLIRCHLCQSRCIHCYCMDPP------LDPWTCIHCKDL 483 (492)
Q Consensus 449 e~~~~~C~~C~~~~~Hs~C~~~p------l~~w~C~~C~e~ 483 (492)
...++-|+.|.. |+|.-|.+.. .+.|+|+.|...
T Consensus 55 ~~~mI~CD~C~~-WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQT-WYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCC-EEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCc-CCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 357889999996 9999999943 256999999764
No 191
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.76 E-value=3.7 Score=41.78 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=39.4
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMSI 394 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~~ 394 (492)
-.+.|||=...+..|+....|.|.-|++- ..|+... .....+.||+|.+.+...
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~-~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMN-EKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHH-HHSCCCBCTTTCSBCCGG
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHH-hhCCCeECCCCCcccCHH
Confidence 35799999999999977788999966653 3344332 124589999999987653
No 192
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=58.53 E-value=9.3 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=31.6
Q ss_pred CcccccccccccccccEeec---CCCcccHHhHHHHHHhh----------ccCCCccCCCCCC
Q 011171 339 GELSCVICWTEFSSTRGVLA---CGHRFCYSCIQNWADHM----------ASVRKISTCPLCK 388 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~---CgH~FC~~CI~~~l~~~----------~~~~~~~~CP~Cr 388 (492)
.+..|.||...-.+. .+| |+-.||..|+.+.-..+ ......+.||.|.
T Consensus 14 ~D~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCccccccccc--eeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 567899997554432 344 78999999998851110 1124467999994
No 193
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=57.54 E-value=11 Score=30.62 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=35.4
Q ss_pred cccccccccccc-----cc-cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 340 ELSCVICWTEFS-----ST-RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 340 ~l~C~IC~e~~~-----~p-~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
...|.||.+..- ++ +..-.|+-..|..|+.--... +...||.|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-----G~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-----GTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-----SCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-----cCccccccCCcccc
Confidence 458999999854 22 112368888999998654444 47899999988765
No 194
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.48 E-value=4.2 Score=32.55 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.2
Q ss_pred cCCCCCCccccc
Q 011171 382 STCPLCKASFMS 393 (492)
Q Consensus 382 ~~CP~Cr~~~~~ 393 (492)
..||.|.+++.+
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 579999887654
No 195
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=53.29 E-value=5.8 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=26.2
Q ss_pred cccccccCCCCccccccCCCCC------------CCCCCccchhh
Q 011171 451 LLIRCHLCQSRCIHCYCMDPPL------------DPWTCIHCKDL 483 (492)
Q Consensus 451 ~~~~C~~C~~~~~Hs~C~~~pl------------~~w~C~~C~e~ 483 (492)
.++-|+.|.. |+|..|.+... ..|.|+.|...
T Consensus 20 ~MIqCd~C~~-W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 20 KMMQCGKCDR-WVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CEEECTTTCC-EEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CeEECCCCCc-ccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 3889999996 99999999642 27999999654
No 196
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.72 E-value=7.1 Score=31.48 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=28.9
Q ss_pred ccccccccCCCCccccccCCC--CCCCCCCccchhh
Q 011171 450 DLLIRCHLCQSRCIHCYCMDP--PLDPWTCIHCKDL 483 (492)
Q Consensus 450 ~~~~~C~~C~~~~~Hs~C~~~--pl~~w~C~~C~e~ 483 (492)
..+++|..|++.+.|..|... ....|.|..|..+
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLRPNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCCTTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCcCCCCCEECCcCccc
Confidence 578999999999999999984 3567999999754
No 197
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.41 E-value=6.5 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
..+..|.||... .+-+.--.|...||..|+..-+... ..+...||.|..
T Consensus 9 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~--p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKA--PEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSC--CCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCC--CCCceECccccc
Confidence 346789999873 2211223688899999998644331 235789999965
No 198
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=46.03 E-value=6.7 Score=30.26 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=34.3
Q ss_pred CCcccccccccccccccEe--ecCCCcccHHhHHHHHHhhccCCCccCCCCCCcccc
Q 011171 338 SGELSCVICWTEFSSTRGV--LACGHRFCYSCIQNWADHMASVRKISTCPLCKASFM 392 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~--l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~ 392 (492)
.+...|+||.........+ -.|..-||..|+..-.... ....+.||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~--~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPP--EEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCC--SSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCC--CCCCEEChhccCchh
Confidence 3456899998876532122 2578899999986533321 124789999976543
No 199
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=45.73 E-value=8.5 Score=32.19 Aligned_cols=32 Identities=25% Similarity=0.758 Sum_probs=24.9
Q ss_pred ccccccccCCCCccccccCCCCCC---------CCCCccchh
Q 011171 450 DLLIRCHLCQSRCIHCYCMDPPLD---------PWTCIHCKD 482 (492)
Q Consensus 450 ~~~~~C~~C~~~~~Hs~C~~~pl~---------~w~C~~C~e 482 (492)
..++.|..|.. ++|..|++++.. .|.|+.|..
T Consensus 73 ~~m~~C~~C~~-~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 73 KKLMECCICNE-IVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp GSCEEETTTCC-EECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cceEEeeecCC-eEECCCCCCCccccccccCCCCeECCCCcC
Confidence 45778999996 999999985421 399999864
No 200
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=42.13 E-value=6.7 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.6
Q ss_pred CCcccccccccccccc
Q 011171 338 SGELSCVICWTEFSST 353 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p 353 (492)
.+.+.||||+..+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3568999999999876
No 201
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=38.91 E-value=11 Score=26.89 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=15.7
Q ss_pred CCCCCCccchhhhccccccC
Q 011171 472 LDPWTCIHCKDLQMLYNRSN 491 (492)
Q Consensus 472 l~~w~C~~C~e~~~~yCr~~ 491 (492)
+....|+.|.+.+++||.+.
T Consensus 6 ~~~~~C~~H~e~l~lfC~~d 25 (53)
T 2did_A 6 SGESLCPQHHEALSLFCYED 25 (53)
T ss_dssp CSCCBCTTTCCBCCEEESSS
T ss_pred cCCCcChhhCCeeeEEeCCC
Confidence 45578999988899998764
No 202
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=36.18 E-value=6.5 Score=35.73 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=33.1
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
++..|.||...- +-+..-.|...||..|+.+-+... ..+.+.||.|+..-
T Consensus 3 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~~--p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTNF--PSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSSC--CSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC-eeeecCCCCcccCccccCCCCCCC--CCCCEECccccCcc
Confidence 346799998552 211233688999999987655431 13478999998653
No 203
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=34.03 E-value=6.7 Score=36.42 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=33.1
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASF 391 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~ 391 (492)
.+..|.+|...-. -+..-.|...||..|+.+-+... ..+.+.||.|+..-
T Consensus 6 ~~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~~--p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLLSF--PSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE-EEECSSSSCEECTTTSSSCCSSC--CSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc-eEEcCCCCCccCCccCCCCCCCC--CCCCEEeCceeCcc
Confidence 3467999985432 11223688999999987655432 13478999998654
No 204
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=33.98 E-value=20 Score=26.81 Aligned_cols=40 Identities=25% Similarity=0.675 Sum_probs=28.4
Q ss_pred ccccccccccccccE---eecCCCcccHHhHHHHHHhhccCCCccCCCCC
Q 011171 341 LSCVICWTEFSSTRG---VLACGHRFCYSCIQNWADHMASVRKISTCPLC 387 (492)
Q Consensus 341 l~C~IC~e~~~~p~~---~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~C 387 (492)
..|--|+..|.+. . -..|++.||.+|=. ++.. ....||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~-fiHe-----~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDV-FVHD-----SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHH-TTTT-----TSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhH-HHHh-----hccCCcCC
Confidence 3599999999765 3 34689999999932 2222 26789988
No 205
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.77 E-value=26 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=33.0
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhh-----ccCCCccCCCCCCc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHM-----ASVRKISTCPLCKA 389 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~-----~~~~~~~~CP~Cr~ 389 (492)
.+..|.+|.+--.= +.--.|-..||..||.+-+... ....+.+.||.|..
T Consensus 62 ~~d~C~vC~~GG~L-lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNL-ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSE-EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcE-EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35679999875431 1233688999999998755310 01235889999974
No 206
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=31.94 E-value=15 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=12.3
Q ss_pred CCCccchhhhccccccC
Q 011171 475 WTCIHCKDLQMLYNRSN 491 (492)
Q Consensus 475 w~C~~C~e~~~~yCr~~ 491 (492)
..|..|.+.+++||...
T Consensus 4 ~~C~~H~e~l~lfC~~d 20 (42)
T 1fre_A 4 EKCSEHDERLKLYCKDD 20 (42)
T ss_dssp CCCCSSCSSCCCCCCSS
T ss_pred ccchhhCCeeeEEeCCC
Confidence 46777877788887653
No 207
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.27 E-value=46 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=31.2
Q ss_pred cccccccccccccccEeecCCCcccHHhHHHHH-----HhhccCCCccCCCCCCc
Q 011171 340 ELSCVICWTEFSSTRGVLACGHRFCYSCIQNWA-----DHMASVRKISTCPLCKA 389 (492)
Q Consensus 340 ~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l-----~~~~~~~~~~~CP~Cr~ 389 (492)
+..|.||.+--.-. .--.|-..||..||.+-+ .........+.|+.|..
T Consensus 57 ~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45688888653211 223688999999998752 22111235799999964
No 208
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.09 E-value=11 Score=30.46 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 338 SGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
.....|.||...- +-+.--.|.-.||..|+.+-+... ..+.+.||.|..
T Consensus 23 ~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~--P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDV--PGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCC--CSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCC--cCCCcCCccccC
Confidence 4456899999753 211223688899999997655432 235789999975
No 209
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.46 E-value=21 Score=27.31 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=16.6
Q ss_pred ccccccccCccCCcccccccccCCC
Q 011171 436 LLEACIECRSQEPQDLLIRCHLCQS 460 (492)
Q Consensus 436 ~~~~C~~C~~~~~e~~~~~C~~C~~ 460 (492)
....|.+|.. +|.+.|..|+.
T Consensus 7 e~pWC~ICne----DAtlrC~gCdg 27 (67)
T 2d8v_A 7 GLPWCCICNE----DATLRCAGCDG 27 (67)
T ss_dssp CCSSCTTTCS----CCCEEETTTTS
T ss_pred CCCeeEEeCC----CCeEEecCCCC
Confidence 3467999954 58999999975
No 210
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.37 E-value=16 Score=26.76 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=14.0
Q ss_pred CCCCCccchhhhccccccC
Q 011171 473 DPWTCIHCKDLQMLYNRSN 491 (492)
Q Consensus 473 ~~w~C~~C~e~~~~yCr~~ 491 (492)
....|+.|.+.+++||...
T Consensus 13 ~~~~C~~H~e~L~lfC~~d 31 (59)
T 2yrg_A 13 KVDHCARHGEKLLLFCQED 31 (59)
T ss_dssp CSSBCTTTCCBCCEEETTT
T ss_pred cCccChhhCceeeeecCCC
Confidence 3467888888888888753
No 211
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.23 E-value=11 Score=31.16 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.3
Q ss_pred cCCCCCCccccc
Q 011171 382 STCPLCKASFMS 393 (492)
Q Consensus 382 ~~CP~Cr~~~~~ 393 (492)
..||.|.+++.+
T Consensus 33 ~~CP~Cq~eL~~ 44 (101)
T 2jne_A 33 LHCPQCQHVLDQ 44 (101)
T ss_dssp CBCSSSCSBEEE
T ss_pred ccCccCCCccee
Confidence 589999887654
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=29.06 E-value=1.2e+02 Score=25.75 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=44.5
Q ss_pred CcEEEecCCCcchHHHHHHHHHhcCCEEecccCCC--CcEEEecCCCChhHHHHHhcCCeEecccc
Q 011171 3 SVVATVSGYHGTERFNLIKLISYSGASYVGTMSKS--TTHLVCWKFEGEKHSLAKKFRTIIVNHQW 66 (492)
Q Consensus 3 g~~I~vSG~~~~er~~i~~li~~~Gg~~~~~lt~~--vTHLV~~~~~~~K~~~A~~~~i~IVs~~W 66 (492)
..-|+|.||.......|.......|-.+....... --||-. ....-.++|+..+..|+.-.|
T Consensus 24 ~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y--~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 24 DTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRY--QSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp GGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECSSSSEEEEEE--SSHHHHHHHHTTTTCEETTTE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhCcEEEeccCCCCCeEEEEe--CCHHHHHHHHHhCCeEecCCE
Confidence 45689999999999999999999999887777433 344444 334556677777666665444
No 213
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=28.02 E-value=19 Score=27.26 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=14.5
Q ss_pred CCCCCCccchhhhccccccC
Q 011171 472 LDPWTCIHCKDLQMLYNRSN 491 (492)
Q Consensus 472 l~~w~C~~C~e~~~~yCr~~ 491 (492)
+....|+.|.+.+++||.+.
T Consensus 16 ~~~~~C~~H~e~l~lfC~~d 35 (72)
T 2csv_A 16 FEARKCPVHGKTMELFCQTD 35 (72)
T ss_dssp SSCCBCTTTCCBCCEEESSS
T ss_pred cccCcCcccCCceEEEeCCC
Confidence 34567888888888888753
No 214
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.01 E-value=19 Score=26.23 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=14.2
Q ss_pred CCCCCccchhhhccccccC
Q 011171 473 DPWTCIHCKDLQMLYNRSN 491 (492)
Q Consensus 473 ~~w~C~~C~e~~~~yCr~~ 491 (492)
....|..|.+.+++||...
T Consensus 17 ~~~~C~~H~e~L~lfC~~d 35 (57)
T 2egm_A 17 DQGICPKHQEALKLFCEVD 35 (57)
T ss_dssp TTSBCTTTCCBCCEEETTT
T ss_pred ccCcChhhCceeeEEcCCC
Confidence 3467888888888888753
No 215
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.16 E-value=73 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.690 Sum_probs=15.9
Q ss_pred cccccccCccCCcccc----cccccCCC
Q 011171 437 LEACIECRSQEPQDLL----IRCHLCQS 460 (492)
Q Consensus 437 ~~~C~~C~~~~~e~~~----~~C~~C~~ 460 (492)
...|..|..... ++ ..| .|+.
T Consensus 15 ~~rC~~C~kk~g--L~~~egf~C-rCg~ 39 (67)
T 1x4w_A 15 RRRCFQCQTKLE--LVQQELGSC-RCGY 39 (67)
T ss_dssp TTBCSSSCCBCC--HHHHHHHCC-SSSC
T ss_pred CCcchhhCCeec--ccccCceEe-cCCC
Confidence 467999988754 44 579 8998
No 216
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.01 E-value=33 Score=26.29 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=21.8
Q ss_pred cccccccccccccc---cEeecCCCcccHHhHH
Q 011171 340 ELSCVICWTEFSST---RGVLACGHRFCYSCIQ 369 (492)
Q Consensus 340 ~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~ 369 (492)
+..|.+|...|.-- ----.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35899999988732 1234799999999853
No 217
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=23.33 E-value=31 Score=25.24 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=12.5
Q ss_pred CCCCCccc-hhhhcccccc
Q 011171 473 DPWTCIHC-KDLQMLYNRS 490 (492)
Q Consensus 473 ~~w~C~~C-~e~~~~yCr~ 490 (492)
....|+.| .+.+.+||.+
T Consensus 7 ~~~~C~~H~~e~l~lfC~~ 25 (64)
T 2d8u_A 7 GHPMCKEHEDEKINIYCLT 25 (64)
T ss_dssp CCCCCSSCTTCCCCSEESS
T ss_pred CCCcCcCcCCCccceEcCc
Confidence 34577777 6777777765
No 218
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=23.22 E-value=14 Score=33.85 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=31.4
Q ss_pred ccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCcc
Q 011171 341 LSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKAS 390 (492)
Q Consensus 341 l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~ 390 (492)
..|.+|...-. -+....|...||..|+.+-+... ..+.+.||.|+..
T Consensus 3 ~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~~--p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQDV--PGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS-CCCCTTTCCBCCSTTSTTCCSSC--CCTTCCTTTTSCS
T ss_pred CcCccCCCCCc-eeECCCCCchhccccCCCCcccC--CCCCCCCcCccCC
Confidence 47999986532 22334688899999997644331 1357899999865
No 219
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.10 E-value=33 Score=26.89 Aligned_cols=32 Identities=34% Similarity=0.755 Sum_probs=23.2
Q ss_pred CCcccccccccccccc---cEeecCCCcccHHhHH
Q 011171 338 SGELSCVICWTEFSST---RGVLACGHRFCYSCIQ 369 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~ 369 (492)
.+...|.+|...|.-- ----.||..||..|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 4456899999998732 1234799999999964
No 220
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.90 E-value=27 Score=29.82 Aligned_cols=48 Identities=31% Similarity=0.670 Sum_probs=29.1
Q ss_pred CCCCcccccccccccccc---cEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCc
Q 011171 336 STSGELSCVICWTEFSST---RGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKA 389 (492)
Q Consensus 336 ~~~e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~ 389 (492)
+..+...|..|...|.-. -..-.||..||..|....... ...|-.|-.
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~------vRVC~~C~~ 65 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG------PRLCLLCQR 65 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC------ceECHHHHH
Confidence 444556899999998732 134589999999997554432 556777743
No 221
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.96 E-value=40 Score=26.55 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=23.4
Q ss_pred CCccccccccccccccc---EeecCCCcccHHhHH
Q 011171 338 SGELSCVICWTEFSSTR---GVLACGHRFCYSCIQ 369 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p~---~~l~CgH~FC~~CI~ 369 (492)
.+...|.+|...|.--. ---.||..||..|..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 44568999999987321 234799999999953
No 222
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.85 E-value=8.2 Score=28.85 Aligned_cols=34 Identities=24% Similarity=0.722 Sum_probs=23.3
Q ss_pred ccccccccccccc-----cEeec--CCCcccHHhHHHHHHh
Q 011171 341 LSCVICWTEFSST-----RGVLA--CGHRFCYSCIQNWADH 374 (492)
Q Consensus 341 l~C~IC~e~~~~p-----~~~l~--CgH~FC~~CI~~~l~~ 374 (492)
-.||-|...+... +.-.. |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4788888777632 22223 8888999888887655
No 223
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.63 E-value=13 Score=29.60 Aligned_cols=30 Identities=27% Similarity=0.743 Sum_probs=20.2
Q ss_pred ccccccccccc----ccEee-cCCCcccHHhHHHH
Q 011171 342 SCVICWTEFSS----TRGVL-ACGHRFCYSCIQNW 371 (492)
Q Consensus 342 ~C~IC~e~~~~----p~~~l-~CgH~FC~~CI~~~ 371 (492)
-||-|...+.. +.+.= .|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 37777765531 11333 49999999998877
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.60 E-value=33 Score=31.92 Aligned_cols=31 Identities=32% Similarity=0.705 Sum_probs=22.1
Q ss_pred CCcccccccccccccc---cEeecCCCcccHHhH
Q 011171 338 SGELSCVICWTEFSST---RGVLACGHRFCYSCI 368 (492)
Q Consensus 338 ~e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI 368 (492)
.+...|.+|...|.-- .-.-.||+.||..|.
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 3457999999988732 123468888888884
No 225
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.38 E-value=33 Score=29.26 Aligned_cols=30 Identities=33% Similarity=0.737 Sum_probs=22.1
Q ss_pred Ccccccccccccccc---cEeecCCCcccHHhH
Q 011171 339 GELSCVICWTEFSST---RGVLACGHRFCYSCI 368 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---~~~l~CgH~FC~~CI 368 (492)
+...|.+|...|.-- .-.-.||+.||..|.
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 346899999998732 123479999999985
No 226
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.28 E-value=1.2e+02 Score=20.43 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=25.6
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHH-hhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWAD-HMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~-~~~~~~~~~~CP~Cr~~~~~ 393 (492)
..+.|.+|...|... . -|...+. .. .......|+.|.+.|..
T Consensus 11 k~~~C~~C~k~f~~~-~-----------~L~~H~~~~H-~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRP-D-----------HLNGHIKQVH-TSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSH-H-----------HHHHHHHHTS-CCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCH-H-----------HHHHHHHHhc-CCCCCccCCCCCCCCCC
Confidence 457899999888764 1 2333332 11 11235789999987753
No 227
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.03 E-value=45 Score=27.67 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=34.9
Q ss_pred CcccccccccccccccEeecCCCcccHHhHHHHHHhhccCCCccCCCCCCccccc
Q 011171 339 GELSCVICWTEFSSTRGVLACGHRFCYSCIQNWADHMASVRKISTCPLCKASFMS 393 (492)
Q Consensus 339 e~l~C~IC~e~~~~p~~~l~CgH~FC~~CI~~~l~~~~~~~~~~~CP~Cr~~~~~ 393 (492)
+-+.|..|...+........=|..||..|..+.. ...|+.|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--------~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--------AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--------CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--------CccCcccCCcCCc
Confidence 4589999999887532455668889999976532 4579999987764
No 228
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.99 E-value=9.9 Score=29.91 Aligned_cols=15 Identities=33% Similarity=1.085 Sum_probs=12.6
Q ss_pred cCCCcccHHhHHHHH
Q 011171 358 ACGHRFCYSCIQNWA 372 (492)
Q Consensus 358 ~CgH~FC~~CI~~~l 372 (492)
.|++.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999987663
No 229
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.64 E-value=28 Score=33.07 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=32.2
Q ss_pred ccccccCccCCcccccccccCCCCccccccCCC---CCCCCCCccchhh
Q 011171 438 EACIECRSQEPQDLLIRCHLCQSRCIHCYCMDP---PLDPWTCIHCKDL 483 (492)
Q Consensus 438 ~~C~~C~~~~~e~~~~~C~~C~~~~~Hs~C~~~---pl~~w~C~~C~e~ 483 (492)
..|.+|..--. .-..|..|.. .+|.+|... ....-.||.|...
T Consensus 181 ~~C~iC~~iv~--~g~~C~~C~~-~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 181 KICNICHSLLI--QGQSCETCGI-RMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CBCTTTCSBCS--SCEECSSSCC-EECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CcCcchhhHHh--CCcccCccCh-HHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 56999987644 4578999997 999999962 2344689998764
No 230
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=20.58 E-value=31 Score=24.01 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.2
Q ss_pred CCCCccc-hhhhcccccc
Q 011171 474 PWTCIHC-KDLQMLYNRS 490 (492)
Q Consensus 474 ~w~C~~C-~e~~~~yCr~ 490 (492)
...|+.| .+.+++||.+
T Consensus 6 ~~~C~~H~~e~l~lfC~~ 23 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCES 23 (50)
T ss_dssp SCBCSSSTTCBCCEEETT
T ss_pred CCcCcCCCCCCEEEEeCC
Confidence 4578888 7888888875
No 231
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=20.23 E-value=40 Score=36.92 Aligned_cols=53 Identities=25% Similarity=0.661 Sum_probs=37.1
Q ss_pred Ccccccccccccccc---------cEeecCCCcc--------------------cHHhHHHHHHhhcc--CCCccCCCCC
Q 011171 339 GELSCVICWTEFSST---------RGVLACGHRF--------------------CYSCIQNWADHMAS--VRKISTCPLC 387 (492)
Q Consensus 339 e~l~C~IC~e~~~~p---------~~~l~CgH~F--------------------C~~CI~~~l~~~~~--~~~~~~CP~C 387 (492)
+--.|+-|+.++.+| +-.+.||.+| |..|..++-..... ......||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 456888888887765 1345677777 99999998754211 1235789999
Q ss_pred Cccc
Q 011171 388 KASF 391 (492)
Q Consensus 388 r~~~ 391 (492)
+=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 8776
Done!