Your job contains 1 sequence.
>011172
MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKS
NLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSS
MLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVK
SLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE
VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK
RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP
PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRG
YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLII
NFLMCSFCGISS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011172
(492 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q93Y94 - symbol:RPOT1 "DNA-directed RNA polymer... 1192 2.7e-124 2
UNIPROTKB|Q8VWF8 - symbol:RPOT2 "DNA-directed RNA polymer... 1057 7.2e-107 1
UNIPROTKB|P69242 - symbol:RPOT3 "DNA-directed RNA polymer... 869 6.0e-87 1
TAIR|locus:2047515 - symbol:SCA3 "SCABRA 3" species:3702 ... 801 9.7e-80 1
POMBASE|SPAC26H5.12 - symbol:rpo41 "mitochondrial RNA pol... 161 4.3e-08 1
CGD|CAL0005126 - symbol:RPO41 species:5476 "Candida albic... 120 1.2e-06 2
UNIPROTKB|F1PCF7 - symbol:POLRMT "DNA-directed RNA polyme... 118 7.4e-05 2
UNIPROTKB|J9P8Y8 - symbol:POLRMT "DNA-directed RNA polyme... 118 0.00010 2
ASPGD|ASPL0000068622 - symbol:AN7609 species:162425 "Emer... 105 0.00048 3
>UNIPROTKB|Q93Y94 [details] [associations]
symbol:RPOT1 "DNA-directed RNA polymerase 1, mitochondrial"
species:4096 "Nicotiana sylvestris" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
EMBL:AB058956 EMBL:AB058954 EMBL:AJ416568 ProteinModelPortal:Q93Y94
Uniprot:Q93Y94
Length = 1002
Score = 1192 (424.7 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 254/455 (55%), Positives = 301/455 (66%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L +QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS----GSLGFLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSL 305
AA IGEAIE+EARI F + TKK NA L GD E + P +V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNA----LSGDLE---DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQ
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQ 481
Score = 50 (22.7 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++Q+ +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
>UNIPROTKB|Q8VWF8 [details] [associations]
symbol:RPOT2 "DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial" species:4096 "Nicotiana sylvestris"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AB058957 EMBL:AB058958
EMBL:AJ302019 ProteinModelPortal:Q8VWF8 Uniprot:Q8VWF8
Length = 1020
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 230/472 (48%), Positives = 290/472 (61%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL----KKITSLETQ--TLLDSSCP--LLGFRR 51
MWRN+ +Q S+R K S ++T +FL I T+ +L+ SC ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYP-FGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNE 110
L + + F V E+ + E
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154
Query: 111 KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQ 170
+ ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL DMCEQ
Sbjct: 155 LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQ 214
Query: 171 KLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKL 230
KLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LPADMMAVITMHKL
Sbjct: 215 KLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKL 274
Query: 231 VGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +T +
Sbjct: 275 MGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQ 334
Query: 289 XXXXXXXXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI LL++TAY
Sbjct: 335 EKLRK-------KVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAY 387
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIP 407
IQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV KGLE+T RHM+IP
Sbjct: 388 IQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIP 447
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
YMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+
Sbjct: 448 YMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFE 499
>UNIPROTKB|P69242 [details] [associations]
symbol:RPOT3 "DNA-directed RNA polymerase 3, chloroplastic"
species:4096 "Nicotiana sylvestris" [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:AB084950 EMBL:AB084951 EMBL:AJ302020
ProteinModelPortal:P69242 Uniprot:P69242
Length = 977
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 172/337 (51%), Positives = 234/337 (69%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
+Y ML+RRQIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K
Sbjct: 139 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 198
Query: 197 DQATAQDKWKHMT-YAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGE 252
+Q A+ KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG
Sbjct: 199 EQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGM 257
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSLIKKQKLQ 312
A+ENE RI +F + TKK + E ++ + RV SLIK+ ++
Sbjct: 258 AVENEVRIHNFLEKTKKLQKHMTGAQSQ-EDMSRE-------TMILRKRVKSLIKRNRVV 309
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+VR ++K + + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H +
Sbjct: 310 EVRKLMKSE-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFR 368
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
T++ K ++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLP
Sbjct: 369 IATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLP 428
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
SY+MRTHG+R+Q++ ++ P Q++ V++ L S+
Sbjct: 429 SYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGST 465
>TAIR|locus:2047515 [details] [associations]
symbol:SCA3 "SCABRA 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005967
GO:GO:0003899 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:Y08722 EMBL:Y08463 IPI:IPI00536028
PIR:G84632 RefSeq:NP_179989.1 UniGene:At.21683
ProteinModelPortal:O24600 SMR:O24600 IntAct:O24600 STRING:O24600
PRIDE:O24600 EnsemblPlants:AT2G24120.1 GeneID:816946
KEGG:ath:AT2G24120 GeneFarm:2877 TAIR:At2g24120
HOGENOM:HOG000241996 InParanoid:O24600 OMA:TQAKLGS PhylomeDB:O24600
ProtClustDB:CLSN2683020 Genevestigator:O24600 Uniprot:O24600
Length = 993
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 163/347 (46%), Positives = 228/347 (65%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXX 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E + L
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRK------- 312
Query: 295 XXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
RV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 313 ------RVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKE--ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK + RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFE 472
>POMBASE|SPAC26H5.12 [details] [associations]
symbol:rpo41 "mitochondrial RNA polymerase Rpo41"
species:4896 "Schizosaccharomyces pombe" [GO:0000002 "mitochondrial
genome maintenance" evidence=ISS] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 PomBase:SPAC26H5.12 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005759 GO:GO:0000002 GO:GO:0003899
GO:GO:0006390 eggNOG:COG5108 Gene3D:1.10.287.260 PANTHER:PTHR10102
PIR:T38431 RefSeq:NP_594459.2 STRING:O13993
EnsemblFungi:SPAC26H5.12.1 GeneID:2542687 OrthoDB:EOG4M0J8T
NextBio:20803735 GO:GO:0001044 Uniprot:O13993
Length = 1154
Score = 161 (61.7 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 84/352 (23%), Positives = 146/352 (41%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXX 296
RV +G + E E + + K K+ D + L NDP
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKKR---LKELFNDPR------- 441
Query: 297 XXXXRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+ +K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 442 ----KFRQAVKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + ++ GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTYQ-YSN----GRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQ 459
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFK 600
>CGD|CAL0005126 [details] [associations]
symbol:RPO41 species:5476 "Candida albicans" [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0005126 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0003899
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
RefSeq:XP_718901.1 RefSeq:XP_719003.1 STRING:Q5ABC9 GeneID:3639378
GeneID:3639479 KEGG:cal:CaO19.13462 KEGG:cal:CaO19.6041
Uniprot:Q5ABC9
Length = 1300
Score = 120 (47.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 43/159 (27%), Positives = 68/159 (42%)
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
QKL + R + KG+ + W ++G L+ +LM A + + D PAF
Sbjct: 533 QKLMR-RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAFY 591
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGYNRGGH 426
H ++ F + G R GVI+ + L T I P +PMLV P W + GG
Sbjct: 592 HGMQ-F----IAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNSFYGGGS 646
Query: 427 FFLPSYVMRTHGARQQRETIKMT-PRSQLEPVFQVSRVL 464
+ + ++R + + +K R L VF+ VL
Sbjct: 647 LYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVL 685
Score = 78 (32.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 47/178 (26%), Positives = 78/178 (43%)
Query: 103 ELIDQFNEKG-VSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIE-----TEAWEQA 156
E+++Q G ++ + S L + +++ + + +++QI+I E W+
Sbjct: 339 EVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLERQKQIEIRGIEGAKEKWKHD 398
Query: 157 AKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLGWFEPLRDAIAKDQATAQDKW 205
+E Q DL L C + L LP ++ L I KD A+D+
Sbjct: 399 FEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDR- 457
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQA--ACQ-IGEAIENEARI 260
YAP+ + D +IT+ +L L T G VR +A A Q +G+AIE E RI
Sbjct: 458 --AMYAPFILKISPDKAIIITILELFKLHSTG-GVVRGFRAYKAIQSVGKAIEAEYRI 512
>UNIPROTKB|F1PCF7 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 EMBL:AAEX03012675 EMBL:AAEX03012674
Ensembl:ENSCAFT00000031345 Uniprot:F1PCF7
Length = 1221
Score = 118 (46.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 38/134 (28%), Positives = 59/134 (44%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW LV++G RL +LL+ET I P + P H SF R+
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVY-SFRSF----RQI 605
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 606 GILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTM 665
Query: 441 QQRETIKMTPRSQL 454
Q + + P ++L
Sbjct: 666 QHQRLLDSCPPAEL 679
Score = 62 (26.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
GM +M++R+Q+ + +A +Q Y LLA Q AP+LP
Sbjct: 492 GMRVFNRHMVQRKQLSSQVQALQQRYYRYLHLLASDT-QVAAPHLP 536
>UNIPROTKB|J9P8Y8 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR006019
InterPro:IPR006020 InterPro:IPR024075 Pfam:PF00640 Pfam:PF00940
PRINTS:PR00629 PROSITE:PS00489 PROSITE:PS00900 PROSITE:PS01179
SMART:SM00462 InterPro:IPR002885 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AAEX03012675
EMBL:AAEX03012674 Ensembl:ENSCAFT00000046349 Uniprot:J9P8Y8
Length = 1414
Score = 118 (46.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 38/134 (28%), Positives = 59/134 (44%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW LV++G RL +LL+ET I P + P H SF R+
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVY-SFRSF----RQI 605
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 606 GILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTM 665
Query: 441 QQRETIKMTPRSQL 454
Q + + P ++L
Sbjct: 666 QHQRLLDSCPPAEL 679
Score = 62 (26.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
GM +M++R+Q+ + +A +Q Y LLA Q AP+LP
Sbjct: 492 GMRVFNRHMVQRKQLSSQVQALQQRYYRYLHLLASDT-QVAAPHLP 536
>ASPGD|ASPL0000068622 [details] [associations]
symbol:AN7609 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001044 "mitochondrial RNA polymerase regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0003677 GO:GO:0006351 EMBL:BN001304
EMBL:AACD01000130 GO:GO:0003899 eggNOG:COG5108 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 OrthoDB:EOG4M0J8T
RefSeq:XP_680878.1 STRING:Q5AVS1 EnsemblFungi:CADANIAT00000724
GeneID:2869348 KEGG:ani:AN7609.2 HOGENOM:HOG000167182 OMA:LQAEDPW
Uniprot:Q5AVS1
Length = 1391
Score = 105 (42.0 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 33/125 (26%), Positives = 55/125 (44%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR--PAFVHTLKSFTKEALKGRRY 384
W KVG L+ LL + A + PV++ + R + + + + GRR
Sbjct: 534 WATAIKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQHSYQITWGRRT 593
Query: 385 GVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS-YVMRTHGARQQ 442
G I +P + K L + ++ +PML P W+GY G +F+ + +V T G Q
Sbjct: 594 GYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYHQNLFVRSTPGESLQ 653
Query: 443 RETIK 447
+K
Sbjct: 654 PTYVK 658
Score = 71 (30.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 38/172 (22%), Positives = 71/172 (41%)
Query: 114 SILDSSSMLDKQPKKKGTGMG--TAKYYMLKRRQ------IKIETEAWEQAAKEYQDLLA 165
S+ DS S + KK M + + Y +R+Q +K W Q K Q
Sbjct: 319 SLKDSMSSVFADDAKKIPAMDEESREVYQQRRQQQLEADVMKSAVNRWRQENKIQQQFQP 378
Query: 166 DMCE--QKLAPNL-PYVKSLFLGWFEPLRDAI-AKDQATAQDKWKH-MTYAPYFNNLPAD 220
D+ E ++L P L + L + E ++ A+ + D+ + + Y PY + +
Sbjct: 379 DVFENGKQLGPLLRQWNADLVVRIEEEFKEIEKARTASMITDEVRERVDYGPYLRMVKPE 438
Query: 221 MMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKK 270
+A +T+ + L N + +++ A IG + E +Q + KK+
Sbjct: 439 ELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQRMVERRKKE 490
Score = 41 (19.5 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 30 KITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
++TSL++ S P RR+SF SS+K
Sbjct: 38 RLTSLQSSA--SRSSPENRSRRSSFQSSRK 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 492 458 0.00095 118 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 613 (65 KB)
Total size of DFA: 276 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.73u 0.14s 34.87t Elapsed: 00:00:02
Total cpu time: 34.73u 0.14s 34.87t Elapsed: 00:00:02
Start: Tue May 21 01:03:17 2013 End: Tue May 21 01:03:19 2013