BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011172
(492 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 997
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 288/481 (59%), Positives = 353/481 (73%), Gaps = 17/481 (3%)
Query: 1 MWRNLARQSSTR----NFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWRN AR++S NF ++++Q + L+K+ E QTLL S LG RR S LS
Sbjct: 1 MWRNFARRTSLSSKKLNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLS 60
Query: 57 SQKSNLGQSNFTQSIYPFGV--LTSRSYASAA-EAIAS--ESELSGSEEVQELIDQFNE- 110
SQ + +FT PFG + YA+AA + IAS ES+ SG +E+QE I++ N+
Sbjct: 61 SQNHEFIKPSFTNLTNPFGFSHFLFKGYATAAAQVIASTDESDFSGCDELQEQIEEINKH 120
Query: 111 -KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
K + +Q KK GMG KY +LK+RQIK+ETEAWE+AA+EYQ+LL DMCE
Sbjct: 121 HKKMDAHFRQQQQQQQRKKTIAGMGIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCE 180
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRDAIAK+Q +++K +++ PYF+ LPADMMAVITMHK
Sbjct: 181 QKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHK 240
Query: 230 LVGLLMT---NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL--EGDSEPL 284
L+GLLMT G VRVVQAAC +GEAIE+EARI F + TKKK + N EG EP+
Sbjct: 241 LMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPV 300
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T+D EKL KEQEKL+K+VT L+KKQK+QQVRG+ KGH DS PWGQ+A VKVGCRLIQLL+
Sbjct: 301 TSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLI 360
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRH 403
ETAYIQPPV+QLGD PDIRPAF+HTLK+ K+ K RRYGVIECDP+VR GLEK+ RH
Sbjct: 361 ETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARH 420
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRV 463
M+IPYMPMLVPPLNW GY++G + FLPSYVMRTHGA+QQR +K TP QLEPV++
Sbjct: 421 MVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNT 480
Query: 464 L 464
L
Sbjct: 481 L 481
>gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/478 (60%), Positives = 346/478 (72%), Gaps = 30/478 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTN-------FLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRNLA+ + TR + S S + + F K +LE+Q ++S P+ G RR
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
LS Q+ LG+ F + P FG+ + YASAAEAIASE ++SG +EVQEL+++ N
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ L+KQPK G G+ K+ +L+RRQIK+ETEAWE+AAKEY++LL+DMCE
Sbjct: 121 K--------GDKLEKQPKLIG-GVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVITMHK
Sbjct: 172 QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231
Query: 230 LVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+T
Sbjct: 232 LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT-- 289
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+ETA
Sbjct: 290 -----KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMII 406
YIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RHM+I
Sbjct: 345 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVI 404
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
PYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+ L
Sbjct: 405 PYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTL 462
>gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 968
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/482 (55%), Positives = 338/482 (70%), Gaps = 37/482 (7%)
Query: 1 MWRNLARQSSTRNFK----FSPS---KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRN+ + +++R K FS S KV++ FL +I S + L++ C G R
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVL-TSRSYASAAEAIASESELSGSEEVQELIDQFN 109
FL QK SNF S P +GVL ++ YA+AAEA E +LSGSEE+QE+++ N
Sbjct: 61 FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
++ D + KQPK G KY ML++RQIKIETEAWE+AAKEYQDL+AD+CE
Sbjct: 121 KQ-----DKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICE 175
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWF+PLRDAI +Q + + K ++A YF+ LPADMMAVITMHK
Sbjct: 176 QKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVITMHK 235
Query: 230 LVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
L+GLLM++ G VRV QAA IGEAIENE RI++FF+ TKK+
Sbjct: 236 LMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFEKTKKQ---------------- 279
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
PE+L + +KL+K++T L+K+QKLQ+V IVK H DSKPWG DA VKVGCRLIQLL+ET
Sbjct: 280 -PEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWGTDAHVKVGCRLIQLLIET 338
Query: 347 AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMI 405
AYIQPPVDQ+GD+PPD+RPAFVH+LK+ KE+ + G+RYGVIECDPLV +G+ KT HMI
Sbjct: 339 AYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRYGVIECDPLVYRGMVKTAGHMI 398
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLY 465
IPYMPMLVPP W GY++G HFFLPSYVMR GARQQRE +K + QL PVF+ +L
Sbjct: 399 IPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAVKRASKKQLGPVFKALDILG 458
Query: 466 SS 467
S+
Sbjct: 459 ST 460
>gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/456 (58%), Positives = 324/456 (71%), Gaps = 19/456 (4%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE ++E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDTDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQ 245
EPLRDAIA +Q + AP+F+ LPA+MMAVITMHKL+G LMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQ
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482
>gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/489 (54%), Positives = 336/489 (68%), Gaps = 34/489 (6%)
Query: 1 MWRNLARQSSTR-------------NFKFSPSKVSQTTNF--LKKITSLETQTLLDSSCP 45
MWRN+A+++ R + ++S SQ F + K + E + S
Sbjct: 40 MWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFS 99
Query: 46 LLGFRRTSFLSSQKSNLGQSNFT--QSIYPFGVLTSRSYASAAEAIAS---ESELSGSEE 100
+GFRR +SS++ +G+ +F ++ F +SYAS AEA++S E ++S S+E
Sbjct: 100 EMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDE 159
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
+QEL+ + ++ ++ ++ K GM +Y L+RRQ+KIETEAWE AAKEY
Sbjct: 160 IQELLGEMKKEEKRQVNFKR---REKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEY 216
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPAD 220
++LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAI K+Q + YAPYF+ LPAD
Sbjct: 217 KELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPAD 276
Query: 221 MMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKN-ATDNNL 277
MM+VITMHKLVGLLMT G RVVQAAC IG+AIE E RI +F + TK+K D N+
Sbjct: 277 MMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNV 336
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
EG DP +I EQEKL+K+VT+L+KKQKL R IVKGH +SKPWG +A KVG
Sbjct: 337 EGGG----FDP--VIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGS 390
Query: 338 RLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRK 395
RLI+LLM+TAYIQPPVD QL D+PPDIRPAFVHT K+ +EA K GRR+GVIECDPLV+K
Sbjct: 391 RLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKK 450
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPY+PMLVPPL W GY++G H FLPSYVMRTHGARQQRE +K PR+QLE
Sbjct: 451 GLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLE 510
Query: 456 PVFQVSRVL 464
PVF+ L
Sbjct: 511 PVFEALNTL 519
>gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/456 (58%), Positives = 320/456 (70%), Gaps = 19/456 (4%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHK + + G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+L+K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERLRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQ
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482
>gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
AltName: Full=NsRpoT-A; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1;
Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/456 (57%), Positives = 320/456 (70%), Gaps = 19/456 (4%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHK + + G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQ
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482
>gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
AltName: Full=NictaRpoT1-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1B;
Flags: Precursor
Length = 1002
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/495 (53%), Positives = 329/495 (66%), Gaps = 48/495 (9%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHK + + G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQV 460
+K P+ QLEPVFQ
Sbjct: 468 VKRVPKKQLEPVFQA 482
>gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/495 (53%), Positives = 329/495 (66%), Gaps = 48/495 (9%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHK + + G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQV 460
+K P+ QLEPVFQ
Sbjct: 468 VKRVPKKQLEPVFQA 482
>gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa]
gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/341 (67%), Positives = 276/341 (80%), Gaps = 6/341 (1%)
Query: 125 QPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFL 184
Q KK GMG KY +LKRRQIK+ETEAWEQAA+EYQ++L DMCEQKLAPNLPYVKSLFL
Sbjct: 18 QEKKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFL 77
Query: 185 GWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EV 241
GWFEPLRDAI +Q + + +++ +F++LPADMMAVITMHKL+GLLMT G +
Sbjct: 78 GWFEPLRDAIVAEQELCKRNLR-VSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASI 136
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL-EGDSEPLTNDPEKLIKEQEKLKK 300
RVVQAA +GEAIE+E RI F + TKK+ + + EG+S+ + EKL KEQEKL+K
Sbjct: 137 RVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLRK 196
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
+VT+LIKKQK+QQVR IVKGH DS+PWGQ+ VKVG RLIQL++ETAYIQPP+DQ+GD P
Sbjct: 197 KVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGP 256
Query: 361 PDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
PDIRPAFVHTLK+ TK+ K RRYGVIECDPLVRKGLEK+ RHM+IPYMPMLVPPLNW
Sbjct: 257 PDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWT 316
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
GY++G H FLPSYVMR HG++QQR+ +K R+QLEPVF+
Sbjct: 317 GYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKA 357
>gi|1865721|emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/460 (53%), Positives = 314/460 (68%), Gaps = 28/460 (6%)
Query: 19 SKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVL- 77
S+ +++ KI Q ++ P+LGF R L + S +G SNF PFG+
Sbjct: 27 SRWKESSQDSAKIRQFLGQNSVNPRFPMLGFGRNGELLCRNSEMGGSNFMFYANPFGIFG 86
Query: 78 -----TSRSYASAA---EAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKK 129
TS SYA+AA E + + SE +E++EL+D+ N+ + + S+ K+P
Sbjct: 87 FYAQSTSCSYATAAAAEEIVTASSE--EDDEIRELVDEINK--LERVKPQSIRRKEPINM 142
Query: 130 GTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEP 189
GM +Y +L++RQIK+ETEAW +AA+EYQ+LLADMCEQKLAPNLPY+KSLFLGWFEP
Sbjct: 143 VAGMTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEP 202
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAA 247
L+DAI Q + Y F+ LPADMMAVITMHKL+GLLMT +G V+QAA
Sbjct: 203 LKDAIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNGGTTVIQAA 262
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
QIGEA+E EA+I+ F + +KKK AT+NN E DS K Q++L K+VT+L+K
Sbjct: 263 TQIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDS----------AKAQQRLAKKVTTLMK 312
Query: 308 KQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF 367
KQK+ QVR IV+G DSKPW QD VKVGC+LIQLL ETAYIQPP DQL D PPDIRPAF
Sbjct: 313 KQKISQVREIVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPAF 372
Query: 368 VHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
+HT K+ KE+ KG RRYGVIECDPLVR+GLEKT RHM+IPYMPML+PPLNW GY++G
Sbjct: 373 IHTQKTVCKESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGA 432
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPR-SQLEPVFQVSRVL 464
+ +LPSY+MRTHG +QQR+ IK R + L VF+ L
Sbjct: 433 YLYLPSYIMRTHGVKQQRDAIKRVARDNNLCTVFEALDTL 472
>gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa]
gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/332 (68%), Positives = 268/332 (80%), Gaps = 6/332 (1%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
MG KY +LKRRQ+K+ETEAWEQ A+EYQ++L DMCEQKLAPNLPYVKSLFLGWFEPLRD
Sbjct: 1 MGIGKYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRD 60
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EVRVVQAACQ 249
AI +Q + + + YFN+LPADMMAVITMHKL+GLLMT G +RVVQAA
Sbjct: 61 AILAEQELCKVN-SRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASV 119
Query: 250 IGEAIENEARIQSFFKSTKK-KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+GEAIENEA+I F + TKK KN + EG+S + EKL KEQEKL+K+VT+L+KK
Sbjct: 120 VGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKK 179
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
QK+ QVR IVKGH DS PWGQ+A +KVG RLIQL++ETAYIQPP+DQ+GD PPDIRPAFV
Sbjct: 180 QKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFV 239
Query: 369 HTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
HTLK+ TK+ K RRYGVIECDPLVRKGLEK+ RHM+IPYMPMLVPPLNW GY++G +F
Sbjct: 240 HTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYF 299
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
FLPSYVMR HGA+QQR IK R+QLEPVF+
Sbjct: 300 FLPSYVMRIHGAKQQRVAIKRASRNQLEPVFK 331
>gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags:
Precursor
gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase
[Arabidopsis thaliana]
gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 976
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 245/473 (51%), Positives = 317/473 (67%), Gaps = 22/473 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ L
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTL 460
>gi|2330568|emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 976
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 245/473 (51%), Positives = 317/473 (67%), Gaps = 22/473 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ L
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTL 460
>gi|308026305|emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/392 (58%), Positives = 288/392 (73%), Gaps = 13/392 (3%)
Query: 80 RSYASAAEAIASESE-LSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKY 138
+ +AS AEA++S E S EE++ L+++F+E+ + + + K +G AKY
Sbjct: 102 QGFASVAEAVSSTDEDTSAIEEIKGLVERFSEE--VFKEKEGEFRGKRRTKFGNLGYAKY 159
Query: 139 YMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ 198
LKRRQIKIETEAWEQAAKEY++L+ DMC+ KLA NLPY+KSLFLGWFEPLRD IA +Q
Sbjct: 160 NALKRRQIKIETEAWEQAAKEYKELMMDMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQ 219
Query: 199 ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIEN 256
+ Y PY N LPA+MMAVITMHKLVGL+MT+ G RVVQAAC+IG+AIEN
Sbjct: 220 EACRRGKCRAAYGPYLNRLPAEMMAVITMHKLVGLMMTSGDHGCARVVQAACRIGDAIEN 279
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
E+RI SF + TKKK+A N E +PE + KE+E L+K+VT+LIKKQKL+QV
Sbjct: 280 ESRIHSFLEKTKKKHARGNMAE-------EEPETVTKEKEFLRKKVTNLIKKQKLRQVTK 332
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
+VKG DS PWG +A KVGC LI+LL+ETAYIQPP+DQ D PPDIRPAF H+L++ +K
Sbjct: 333 LVKGKDDSAPWGVEAHAKVGCHLIELLIETAYIQPPLDQTVDGPPDIRPAFRHSLRNVSK 392
Query: 377 E-ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
E + RRYGVIECDPLVRKGL+KT RH +IPYMPMLVPPL W GY++G H FLPSY+MR
Sbjct: 393 EQSSNSRRYGVIECDPLVRKGLDKTARHTVIPYMPMLVPPLCWTGYDKGAHLFLPSYIMR 452
Query: 436 THGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
THG+RQQRE +K TP QL+ +F+ L S+
Sbjct: 453 THGSRQQREAVKRTPTQQLQSIFEALDTLGST 484
>gi|334183757|ref|NP_001185355.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/480 (51%), Positives = 317/480 (66%), Gaps = 29/480 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKT-------GRHM 404
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHM 407
Query: 405 IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
+IPY+PML+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ L
Sbjct: 408 VIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTL 467
>gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/484 (50%), Positives = 317/484 (65%), Gaps = 27/484 (5%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGSEEVQELID 106
L + + +SYAS AEA+A +E ++S +EVQEL+
Sbjct: 95 LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLT 154
Query: 107 QFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLAD 166
+ ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL D
Sbjct: 155 ELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFD 211
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA Y LPADMMAVIT
Sbjct: 212 MCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVIT 271
Query: 227 MHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT + G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +
Sbjct: 272 MHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV 331
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI+LL+
Sbjct: 332 T-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLL 384
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
+TAYIQPP +QL PPDIRPAF+H++++ KE RRYG+I+CD LV KGLE+T RH
Sbjct: 385 QTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARH 444
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRV 463
M+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+
Sbjct: 445 MVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDT 504
Query: 464 LYSS 467
L S+
Sbjct: 505 LGST 508
>gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
Length = 1020
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 249/485 (51%), Positives = 317/485 (65%), Gaps = 44/485 (9%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 -------TSFLSSQK-SNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT + G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQV 460
PVF+
Sbjct: 496 PVFEA 500
>gi|48716693|dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 951
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/339 (62%), Positives = 267/339 (78%), Gaps = 8/339 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK +N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKK----SNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 345
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 346 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 405
Query: 370 TLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 406 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 465
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
LPSYVMRTHGARQQR+ ++ PR Q++ VF+ L S+
Sbjct: 466 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGST 504
>gi|222641119|gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/339 (62%), Positives = 267/339 (78%), Gaps = 8/339 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 137 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 196
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 197 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 256
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK +N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 257 IGEAIEHEVRIHKFLEKTKKK----SNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 311
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 312 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 371
Query: 370 TLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 372 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 431
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
LPSYVMRTHGARQQR+ ++ PR Q++ VF+ L S+
Sbjct: 432 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGST 470
>gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1020
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/485 (51%), Positives = 316/485 (65%), Gaps = 44/485 (9%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 -------TSFLSSQK-SNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT + G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDI PAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQV 460
PVF+
Sbjct: 496 PVFEA 500
>gi|195970381|gb|ACG60670.1| hypothetical protein BoB028L01.020 [Brassica oleracea var.
alboglabra]
Length = 951
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/464 (53%), Positives = 310/464 (66%), Gaps = 23/464 (4%)
Query: 1 MWRNLARQSSTRNFK-FSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ +++ R K FS S + T+F I+S+ L G R ++
Sbjct: 1 MWRNIFGRATLRKIKPFSDS--TSATHFRGFISSIN----------LSGGVRNQLATNPV 48
Query: 60 SNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSS 119
+ LG+ +PF R A+AA+ I S+ SGS+EV EL+ ++ + +
Sbjct: 49 NELGRLTSVLHNHPFAF---RGLATAAQTIDSDDSSSGSDEVNELMSAMEKETERVRKKA 105
Query: 120 SMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYV 179
+ KQP K GMG KYY LK+RQ+K+ETE WE+AAKE Q+++ DMCEQKLAPNLPYV
Sbjct: 106 RLAAKQPMKVVAGMGAQKYYSLKQRQVKLETEEWEKAAKECQEIIEDMCEQKLAPNLPYV 165
Query: 180 KSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA- 238
KSLFLGWFEPLRDAI D + K + YA Y LPADMMAVITMHK++GLLMTNA
Sbjct: 166 KSLFLGWFEPLRDAIQADLDGFKVKKGKIPYASYMEQLPADMMAVITMHKMMGLLMTNAE 225
Query: 239 --GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
G V+VV AA QIGEAIE EARI SF K K N ++ +SE + E KE
Sbjct: 226 GVGVVKVVNAATQIGEAIEQEARITSFMKKAK---KKKNVVDDESEAVNASGEVETKETL 282
Query: 297 KLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL 356
KLKK++ +L+KK K++QVR IVK H K WGQ+A VKVG RLIQLLMETAYIQPP +Q
Sbjct: 283 KLKKQINTLLKKHKVRQVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQF 342
Query: 357 GDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPP 415
D PP+IRPAF + + T E K R+YG IECDPL+RKGL+K+ RHM+IPY+PML+PP
Sbjct: 343 DDGPPEIRPAFKQSSRIVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPP 402
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
NW GY++G HFFLPSY+MRTHGA+QQR IK TP++QLEPVFQ
Sbjct: 403 QNWTGYDQGAHFFLPSYIMRTHGAKQQRIAIKRTPKAQLEPVFQ 446
>gi|115478128|ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group]
gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group]
Length = 1017
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/339 (62%), Positives = 267/339 (78%), Gaps = 8/339 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 171 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 230
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 231 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 290
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + TKKK +N E D+E D + + KEQE+L+K+VT L+KKQ
Sbjct: 291 IGEAIEHEVRIHKFLEKTKKK----SNKEMDNEEEGGDSD-IAKEQERLRKKVTDLMKKQ 345
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR IVK +SKPWGQDA KVG RLI+L++ETAYIQPP Q D PPDIRPAF H
Sbjct: 346 KIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTH 405
Query: 370 TLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP++W GY++G H F
Sbjct: 406 EMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLF 465
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
LPSYVMRTHGARQQR+ ++ PR Q++ VF+ L S+
Sbjct: 466 LPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGST 504
>gi|90657592|gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/483 (50%), Positives = 311/483 (64%), Gaps = 37/483 (7%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLL---------------DSSCP 45
MWRN+A+Q+ +R SP ++S + + ++++ S
Sbjct: 40 MWRNIAKQTISR----SPVRLSVCRQS-RGLLGFSSESIFPEIFIFRPSVIGPISSSGFH 94
Query: 46 LLGFRRTSFLSSQKSNLGQSNF--TQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEE 100
+G+ RT + + G+ F + F + RSY +AAEA++S E + S +E
Sbjct: 95 DMGYSRTCEIPAPGDFSGRPGFGFLKDECCFHRFSPRSYVNAAEAVSSTDIEEDASVVDE 154
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQEL+ E L + +++ GM KY LKRRQ+KIETEAWE+AA EY
Sbjct: 155 VQELL---REMKKEEKKEKVHLRRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEY 211
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPAD 220
++LL DMCEQKLAPNLPYVKSLFLGWFEPLR+AIAKDQ + YA Y + LPAD
Sbjct: 212 KELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPAD 271
Query: 221 MMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLE 278
M+AVITMHKL+GLLMT G V+V+ AAC +G+AIE E RI F + TKKK E
Sbjct: 272 MIAVITMHKLMGLLMTGGDNGCVKVIMAACTVGDAIEQEIRICRFLEKTKKKK------E 325
Query: 279 GDSEPLTN-DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
SE + N + E +KE++ LK++V+ LIKKQKL VR I+ H SKPW D KVG
Sbjct: 326 NISEGVENVEKETTVKEEDWLKRKVSELIKKQKLPAVRQILNSHDASKPWSTDVRAKVGS 385
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL 397
RLI+L M+TAYIQPP +Q GD PPDIRPAFVHT K+ GRRYGVIECDPLVRKGL
Sbjct: 386 RLIELFMKTAYIQPPTNQRGDDPPDIRPAFVHTFKTVKNSKKSGRRYGVIECDPLVRKGL 445
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
EKTG HM++PYMPMLVPP+NW GY+RG +FFLPSY+MR HGA+QQRE +K TPR QL+ V
Sbjct: 446 EKTGWHMVMPYMPMLVPPVNWSGYDRGAYFFLPSYLMRIHGAKQQREALKSTPRKQLQLV 505
Query: 458 FQV 460
F+
Sbjct: 506 FEA 508
>gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/398 (56%), Positives = 286/398 (71%), Gaps = 23/398 (5%)
Query: 72 YPFGVLTSRSYASAAEAIAS----ESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
+ FG ++ Y+ AEA++S E E + + +QEL+ +G+ ++ + K
Sbjct: 87 FQFG---AKGYSGVAEAVSSTDVEEDEAAPVDGIQELL-----QGMKKEKQKKVVGYRWK 138
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
+G G+G ++Y L+RRQ+KIETE WE+AAKEY++LL DMCE KLAPNLPY+KSLFLGWF
Sbjct: 139 NQGKGVGQSRYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWF 198
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN-----AGEVR 242
EPLRDAI K+Q + M YAPYF LPAD MAVI MHKL+GLLMT G R
Sbjct: 199 EPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTAR 258
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
VVQAAC IG+AIENE RI F + TKKK +N E + + IKE++KL+K+V
Sbjct: 259 VVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVAD-----IKEEQKLRKKV 313
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L+KKQKL VRG+VKG D+KPWG KVG RLI+LL++TAYIQPP DQL D+ PD
Sbjct: 314 IDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPD 373
Query: 363 IRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGY 421
IRPAFVH+ K+ TKE++K RRYG+I+CDPL+ KGLE+T ++M+IPYMPMLVPP+NW GY
Sbjct: 374 IRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGY 433
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
++GGH FLPSYVMRTHG RQQRE +K PR QLEPVF+
Sbjct: 434 DKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVFE 471
>gi|297841627|ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
gi|297334536|gb|EFH64954.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
Length = 975
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/468 (50%), Positives = 308/468 (65%), Gaps = 21/468 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKS 60
MWRN+ ++S R KF S T + ++ + SS L+G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSGTHFQVNRVRGIL------SSVNLIGVRNGLSINPIDE 54
Query: 61 NLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSIL 116
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 FGGLSSFRYGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERIR 109
Query: 117 DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL 176
+ + PK+ GMG KYYML++RQ+K+ETE WE+AA+E +++LADMCEQKLAPNL
Sbjct: 110 KKARLAATPPKRVIAGMGAQKYYMLRQRQVKMETEEWERAARECREILADMCEQKLAPNL 169
Query: 177 PYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236
PY+K+LFLGWFEP+R+AI D + K + YAP+ LPAD MAVITM+K++GLLMT
Sbjct: 170 PYMKTLFLGWFEPVRNAIQADLDLFKIKKGKIPYAPFMEQLPADKMAVITMNKMMGLLMT 229
Query: 237 N---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
N G V++V AA QIGEA+E E RI SF + KKNAT + ++E + E + K
Sbjct: 230 NVEGVGIVKLVNAATQIGEAVEQEVRINSFLQKNNKKNATGKTI--NTEAVHVSEETVAK 287
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV 353
E EK +KR T L++K KL++V+ +V+ H KPWGQ+A VKVG RLIQLL+E AYIQPP
Sbjct: 288 ETEKARKRATVLMEKNKLREVKVLVRKHDSFKPWGQEAQVKVGARLIQLLIENAYIQPPA 347
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PML
Sbjct: 348 EQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPML 407
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+PP NW GY++G H FLPS++MRTHGA QQR ++ TP+ QLEPVF+
Sbjct: 408 IPPQNWTGYDQGAHLFLPSFIMRTHGAIQQRTVMRRTPKEQLEPVFEA 455
>gi|356560775|ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 955
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/470 (50%), Positives = 309/470 (65%), Gaps = 37/470 (7%)
Query: 1 MWRNLARQSST---RNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSS 57
MW NLA+++S+ NF+ S S + F K T Q P +G ++ F+
Sbjct: 1 MWTNLAKRASSTLRNNFRVS----SLSPRFCKPQTCKTFQGF-----PEVGVSQSKFVFH 51
Query: 58 QKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILD 117
+ + S + + R +AS AEAI S +EVQ+L+++ K +D
Sbjct: 52 EGFSCSSSWSWSWM-----VLGRGHASVAEAIESTDTEDDYDEVQKLLEEM-AKAEHKVD 105
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
SSS KY +LKRRQI+ ETEAW +AA+EY +LL DM ++KLAPNLP
Sbjct: 106 SSSY---------------KYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLP 150
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEPLR+AI DQ +D M++APYFN+LPADMMAV+TMHKL+ LLMTN
Sbjct: 151 YMKSLFLGWFEPLRNAILADQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTN 210
Query: 238 A---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A G RV+QAACQIGEA+ENEARI F K K+ ++ S LT + ++ ++
Sbjct: 211 ANGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQK 270
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
Q +L+KRV L+KKQK Q GI+ D K WGQ+A VKVG RL+QLL+ETAYIQPP +
Sbjct: 271 QSRLRKRVAGLMKKQKKLQAMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTN 330
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414
Q+GD PPDI PAF HTL++ + E + RRYGVIECDPLV+ GLEK+ RHM+IPYMPMLVP
Sbjct: 331 QIGDGPPDIHPAFRHTLRTLSNER-ETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVP 389
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
P+NW GY++G + FLPSYVMR HGA+QQRE +K P+SQL+PVF+ L
Sbjct: 390 PINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTL 439
>gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/301 (71%), Positives = 238/301 (79%), Gaps = 10/301 (3%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVIT
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+
Sbjct: 121 T-------KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLI 173
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
ETAYIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RH
Sbjct: 174 ETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARH 233
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRV 463
M+IPYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+
Sbjct: 234 MVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNT 293
Query: 464 L 464
L
Sbjct: 294 L 294
>gi|357155565|ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/342 (61%), Positives = 265/342 (77%), Gaps = 14/342 (4%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GMG++KY L++RQ++IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFLGWFEPLR
Sbjct: 146 GMGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLR 205
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 206 DQIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 265
Query: 250 IGEAIENEARIQSFF--KSTKKKNATDNNLE-GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F K DN +E GDS+ + KEQ++L+K+VT L+
Sbjct: 266 IGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSD--------IAKEQQRLRKKVTDLM 317
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQK++QVR IVK ++PWGQDA KVG RLI+LL+ETA+IQPPV Q DS PDIRPA
Sbjct: 318 KKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPA 377
Query: 367 FVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ T+E K RRYGVI+CDPL+R+GL++T +HM+IPYMPML+PP++W GY++G
Sbjct: 378 FTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGA 437
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
H FLPSYVMRTHGARQQRE +K P+ Q++ +F+ L S+
Sbjct: 438 HLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGST 479
>gi|356526655|ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 949
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 245/474 (51%), Positives = 309/474 (65%), Gaps = 45/474 (9%)
Query: 1 MWRNLARQSST--RN-FKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSS 57
MW NLA+++S+ RN F+ S S F K TS + P G R+ FL
Sbjct: 1 MWTNLAKRASSTLRNTFRVS----SLYPRFCKPQTSKTINPYPFQAFPKAGVSRSKFLFY 56
Query: 58 QKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILD 117
+ ++S AEAI S +EVQ+L+ Q K +D
Sbjct: 57 E----------------------GFSSVAEAIESTDTEDDYDEVQKLLQQM-AKAEHKVD 93
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
+SS + KY +LKRRQIK ETEAW +AA+EY++LL DM EQKLAPNLP
Sbjct: 94 NSSS-----------SSSYKYKLLKRRQIKSETEAWAEAAREYEELLEDMREQKLAPNLP 142
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEPLR+AI DQ +D M++APYFN+LPADMMAV+TMHKL+ LLMTN
Sbjct: 143 YMKSLFLGWFEPLRNAILADQELCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTN 202
Query: 238 ---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G RV+QAACQIGEA+ENEARI F K K+ ++ LT + ++ K+
Sbjct: 203 TNGVGTARVIQAACQIGEAVENEARIYQFMKREKENKSSHVVPVEQRGELTEENGEMDKK 262
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
Q +L+KRV +L+KKQK Q GIV+G D K WGQ+A VKVG RL+QLL+ETAYIQPP +
Sbjct: 263 QSRLRKRVAALMKKQKKLQAMGIVRGQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPAN 322
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLV 413
+GD PPDIRPAF HTLK+ + E+ K RRYGVIECDPLV+ GLEK+ RHM+IPYMPMLV
Sbjct: 323 LIGDGPPDIRPAFKHTLKTLSSESQKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLV 382
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
PP+NW GY++G + FLPSYVMR HGA+QQRE +K P+SQL+PVF+ L S+
Sbjct: 383 PPINWTGYDKGAYLFLPSYVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGST 436
>gi|6958204|gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/330 (61%), Positives = 260/330 (78%), Gaps = 7/330 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G +KY L++RQI+IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFL WFEPLR
Sbjct: 160 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLR 219
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 220 DQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 279
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEA+E+E RI F + TKKKN ++ E + D + KEQE+L+K+VT L+KKQ
Sbjct: 280 IGEAVEHEVRIHKFLEKTKKKNTK--EVDKVVEAVDAD---IAKEQERLRKKVTDLMKKQ 334
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
K++QVR +VK ++PWGQDA KVG RLI+L +ETA+IQPP Q GDS P+IRPAF H
Sbjct: 335 KIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTH 394
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+NW GY++G H FL
Sbjct: 395 EMRTVAREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 454
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
PSYVMRTHGARQQRE +K P+ Q++ +F+
Sbjct: 455 PSYVMRTHGARQQREAVKKAPKEQMQTIFE 484
>gi|242046328|ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/339 (61%), Positives = 259/339 (76%), Gaps = 7/339 (2%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI++ETEAWEQAAKEY++LLADMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q D ++ PYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
IGEAIE+E RI F + T+KK+ + E ++ T+ + KEQ++L+K+VT L+KKQ
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTD----IAKEQQRLRKKVTDLMKKQ 304
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
KL+QVR IVK +S+PWGQD KVG RLI+L M+TA+IQPP Q D PDIRPAF H
Sbjct: 305 KLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRH 364
Query: 370 TLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
+++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G H F
Sbjct: 365 EMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLF 424
Query: 429 LPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
LPSYVMRTHGARQQRE +K PR Q++ VF+ L S+
Sbjct: 425 LPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGST 463
>gi|40255318|emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/333 (60%), Positives = 257/333 (77%), Gaps = 14/333 (4%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G +KY L++RQI+IETEAWEQAAKEY++LLADMCE KLAPNLPYVKSLFLGWFEPLR
Sbjct: 18 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLR 77
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++APYFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 78 DQIIAEQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 137
Query: 250 IGEAIENEARIQSFF--KSTKKKNATDNNLE-GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEA+E+E RI F K D +E GDS+ + KEQ+ L+K+VT L+
Sbjct: 138 IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSD--------IAKEQQLLRKKVTDLM 189
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQK++QVR +VK ++PWGQDA KVG RLI+L +ETA+IQPP Q GDS P+IRPA
Sbjct: 190 KKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPA 249
Query: 367 FVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGH 426
F H +++ +E K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+NW GY++G H
Sbjct: 250 FTHEMRTVAREQ-KSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAH 308
Query: 427 FFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
FLPSYVMRTHGARQQRE +K P+ Q++ +F+
Sbjct: 309 LFLPSYVMRTHGARQQREAVKKAPKEQMQTIFE 341
>gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa]
gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/335 (62%), Positives = 254/335 (75%), Gaps = 14/335 (4%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
MG+ KY L+RRQ+KIE EAWEQAAKEY++LL DMCE KLAPNLPY+K LFLGWFEPLRD
Sbjct: 1 MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQI 250
AIAK+Q + + Y+PYF+ LPADMM+VITMHKL ++M G RVV AAC I
Sbjct: 61 AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120
Query: 251 GEAIENEARIQSFFKSTKKK----NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
G+AIE E RI +F + T+KK + + N++EG+S + N E+EKL+K+VT LI
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMN-------EEEKLRKKVTDLI 173
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL VR IVKGH DSK W DA KVG RLI+LL++TAYIQPP DQL DSPPD+RPA
Sbjct: 174 KKQKLPAVRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPA 233
Query: 367 FVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
FVHT ++ + E K R+YGVI+CD LV KGLE+T RH++IPYMPMLVPPL WRGY++G
Sbjct: 234 FVHTFRTVSYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGA 293
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
H FLPSYVMR HGA+QQRE +K TP+ QL+ VF+
Sbjct: 294 HLFLPSYVMRIHGAKQQREAVKRTPKKQLQLVFEA 328
>gi|356523672|ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/377 (57%), Positives = 266/377 (70%), Gaps = 21/377 (5%)
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKK----------GTGMGTAKYYMLKRRQIKI 148
EE EL+++ G I + K+ +KK G G+G +Y L+RRQ+KI
Sbjct: 123 EERNELVEEQAAPGDGIRGLFQGMKKEKQKKVVGYNRWQNEGKGVGQCRYQELRRRQVKI 182
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETE WE+AAKEY++LL DMCE KLAPNLPY+KSLFLGWFEPLRDAI K+Q +
Sbjct: 183 ETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYGEGKNRT 242
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTN-----AGEVRVVQAACQIGEAIENEARIQSF 263
Y PYF LPAD MAVI MHKL+GLLMT G RVVQAAC IG+AIENE RI F
Sbjct: 243 AYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATVGTARVVQAACGIGDAIENEVRIHKF 302
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ TKKK + SE + + IKE++KL+K+V L+KKQKL VRG+VKG D
Sbjct: 303 LEKTKKKKGDRSKKNKASESVAD-----IKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDD 357
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-R 382
+KPWG KVG RLI+LLM+TAYIQPP DQL D+ PDIRPAFVH+ ++ K + K +
Sbjct: 358 TKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAKVSAKASK 417
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
RYG+++CDPL+ KGLE+T ++M+IPYMPMLVPP+NW GY++GGH FLPSYVMRTHGARQQ
Sbjct: 418 RYGIVQCDPLILKGLERTAKNMVIPYMPMLVPPVNWSGYDKGGHLFLPSYVMRTHGARQQ 477
Query: 443 RETIKMTPRSQLEPVFQ 459
RE +K PR QLEPVF+
Sbjct: 478 REAVKRAPRKQLEPVFE 494
>gi|308026128|emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/405 (55%), Positives = 279/405 (68%), Gaps = 15/405 (3%)
Query: 67 FTQSIYPFGVLTSRSYASAAEAIASESE-LSGSEEVQELIDQFNEKGVSILDSSSMLDKQ 125
F + + V + + A+ AEA+AS E +S EE+Q L+++ +E+ + D +
Sbjct: 91 FMNASFRCRVGSVQGLANVAEAVASTDEDVSAIEEIQGLLEELSEEVAR--QKTGEFDAK 148
Query: 126 PKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG 185
K +G KY KRRQIKIETEAWEQAA+EY++L DMC+QKLAPNLPY+KSLFLG
Sbjct: 149 NKPNFGDLGFGKYKAQKRRQIKIETEAWEQAAREYRELFVDMCKQKLAPNLPYMKSLFLG 208
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRV 243
WFEPLRD IA +Q + + YA Y ++LPADM+AVITMHKL+GL+MT + G RV
Sbjct: 209 WFEPLRDRIAAEQESYRKGKSRAAYARYIDHLPADMVAVITMHKLMGLMMTSNDNGCARV 268
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
VQAACQIGEAIENEARI F + TKKK A N E +PE + KE+E L+K+VT
Sbjct: 269 VQAACQIGEAIENEARIHRFLEKTKKKPANANKAEA-------EPEAVTKEKEFLRKKVT 321
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLIKKQKL+QV IVKG DS+PWG + KVGCRLI+LLM+ I P+DQ D
Sbjct: 322 SLIKKQKLRQVTKIVKGKDDSEPWGTEGHAKVGCRLIELLMKP-LISAPLDQTADGHL-Y 379
Query: 364 RPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYN 422
AF H+L+S + RRYGVIECDPLVRKGL++T RHM+IPYMPMLVPPL W GY+
Sbjct: 380 SSAFRHSLRSPSNHQQNNSRRYGVIECDPLVRKGLDRTARHMVIPYMPMLVPPLGWTGYD 439
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+G H FLPSYVMRTHGARQQRE +K PR QL+ VF+ L S+
Sbjct: 440 KGAHLFLPSYVMRTHGARQQREAVKSAPRKQLQSVFEALDTLGST 484
>gi|414887624|tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 255/342 (74%), Gaps = 14/342 (4%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI+IETEAWEQAA EY++LLADMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D IA +Q D ++ P+F+ LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLE---GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F + T+KKN + E GD+ + EQ++L+K+VT L+
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDT--------NIAIEQQRLRKKVTDLM 300
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL+QVR IVK S+PWGQDA KVG RLI L + TA+IQPP Q D PDIRPA
Sbjct: 301 KKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPA 360
Query: 367 FVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G
Sbjct: 361 FRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGA 420
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
H FLPSYVMRTHGARQQR+ +K PR Q++ VF+ L S+
Sbjct: 421 HLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGST 462
>gi|162457737|ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 255/342 (74%), Gaps = 14/342 (4%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
GM +Y L+RRQI+IETEAWEQAA EY++LLADMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 129 GMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLR 188
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D IA +Q D ++ P+F+ LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 189 DQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLE---GDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IGEAIE+E RI F + T+KKN + E GD+ + EQ++L+K+VT L+
Sbjct: 249 IGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDT--------NIAVEQQRLRKKVTDLM 300
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366
KKQKL+QVR IVK S+PWGQDA KVG RLI L + TA+IQPP Q D PDIRPA
Sbjct: 301 KKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPA 360
Query: 367 FVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H +++ KE K RRYGVI+CDPLVR+GL++T +HM+IPYMPML+PP+ W GY++G
Sbjct: 361 FRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGA 420
Query: 426 HFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
H FLPSYVMRTHGARQQR+ +K PR Q++ VF+ L S+
Sbjct: 421 HLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGST 462
>gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 984
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/484 (47%), Positives = 307/484 (63%), Gaps = 44/484 (9%)
Query: 1 MWRNLARQSSTRNFKFSPSK--VSQTTNFLKKITS------LETQTLLDSSCPLLGFRRT 52
MW+ +A++ RN +F P +S+ L + L + + SS P G
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 53 SFLSSQKSNLGQSNFTQSIYPFGVLTSR---------SYASAAEAIAS---ESELSGSEE 100
S+ L Q ++ +S + FG + +R Y+S AEA++S + + S +
Sbjct: 61 GVGRSEI--LSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGK 118
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQE + + ++ +++ K GMG KY ML+RRQ+ IE EAWE AAKEY
Sbjct: 119 VQESVQEMSK------------EEKRLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEY 166
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLPA 219
++LL DMC+QKLAPNLPYVKSLFLGWFEP +DAI K+Q Q+ K YAPYF LPA
Sbjct: 167 RELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPA 226
Query: 220 DMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277
D M+VITMHKL+GLLM + G VRVVQAAC IG+AIE E RI F + K++ +N
Sbjct: 227 DKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDN- 285
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
E + +P D E+ KEQE+L+K+VT+LIKK+K I K DS+PWG++ KVG
Sbjct: 286 ENNDQP---DIER--KEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGA 340
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR-RYGVIECDPLVRKG 396
RLI+LL++TAYIQPP DQL D PPD RPAFVH+LK+ K+ R GVIECDPLV KG
Sbjct: 341 RLIELLIQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKG 400
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP 456
L+ T R ++IPYMPML+PP+ WRGY++GGH LPS+ MRTHGA+QQR+ K TP+ QL P
Sbjct: 401 LDWTARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTP 460
Query: 457 VFQV 460
VF+
Sbjct: 461 VFEA 464
>gi|297811707|ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1009
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/479 (49%), Positives = 302/479 (63%), Gaps = 34/479 (7%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLL----------DSSCPLLGFR 50
MWRN+A+Q+ R+ S + S+T FL +S E++ L S C +GFR
Sbjct: 40 MWRNIAKQAILRSATRS-NVGSKTRGFLG--SSPESKNLSFRFPVFGSISGSPCYEMGFR 96
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ + F++S +R YAS AE + S + EE E+ + E
Sbjct: 97 SLSGITRR------DEFSKSERCLNGTLARGYASVAEEVLS----TDVEEEPEVHELLKE 146
Query: 111 KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQ 170
S + K++ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCEQ
Sbjct: 147 MKKEKKRESHRSWRMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQ 206
Query: 171 KLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKL 230
KLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHKL
Sbjct: 207 KLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKL 266
Query: 231 VGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+G LMT G V+VV AAC +G+AIE E RI +F T+KK +N G+ E T+
Sbjct: 267 MGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLDKTRKKKGDENEESGEVENGTS-- 324
Query: 289 EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TAY
Sbjct: 325 ---MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAY 381
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
IQ P DQ + PD+RPAFVHT + A GR+YGVIECDPLVRKGLEK+GR+ +IPY
Sbjct: 382 IQSPADQQDNDLPDVRPAFVHTFRI----ANSGRKYGVIECDPLVRKGLEKSGRYAVIPY 437
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
MPMLVPPL W GY++G + FL SY+M+THG++QQRE +K P+ QL PVF+ L S+
Sbjct: 438 MPMLVPPLKWSGYDKGAYLFLASYIMKTHGSKQQREALKSAPKGQLLPVFEALDTLGST 496
>gi|2326363|emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/480 (49%), Positives = 302/480 (62%), Gaps = 34/480 (7%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
YMPMLVPPL W GY++G + FL SY+MRTHGA+QQRE +K P+ QL+PVF+ L S+
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
>gi|334187707|ref|NP_001190318.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|332004811|gb|AED92194.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1051
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/480 (49%), Positives = 302/480 (62%), Gaps = 34/480 (7%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ L S+
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
>gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; Flags: Precursor
gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]
gi|332004810|gb|AED92193.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1011
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/480 (49%), Positives = 302/480 (62%), Gaps = 34/480 (7%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ L S+
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
>gi|224116234|ref|XP_002331994.1| predicted protein [Populus trichocarpa]
gi|222832118|gb|EEE70595.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 266/415 (64%), Gaps = 51/415 (12%)
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQF 108
T S+LG +N + G SR Y S AEA++S E +SG++EVQEL +
Sbjct: 4 TQLTDFSHSSLGSTNGNRC----GGFCSRGYVSVAEALSSTDVEDNVSGADEVQELQPEM 59
Query: 109 NEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMC 168
++ ++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DMC
Sbjct: 60 RKE-------EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMC 112
Query: 169 EQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
E KLAPNLPY+KSLFLGWFEP RDAIAK+Q + YA YF+ LPAD M+VI MH
Sbjct: 113 EHKLAPNLPYMKSLFLGWFEPFRDAIAKEQELIRTGKSRQGYALYFDLLPADKMSVIAMH 172
Query: 229 KLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+L ++MT G RVV AAC IG+AIE E K N PL +
Sbjct: 173 QLAAMVMTGGQHGCARVVTAACMIGDAIEQE-----------KVN-----------PLLS 210
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
+K+VT LIKKQKL VR IVKG DSKPW DA KVG RLI+LL++T
Sbjct: 211 ------------RKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQT 258
Query: 347 AYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMI 405
AYIQPP DQL D+ + RPAFVHT ++ + E KG ++YGVI+CDPLV KGLEKT RHM+
Sbjct: 259 AYIQPPCDQLADTSSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVLKGLEKTARHMV 318
Query: 406 IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
IPYMPMLVPPL WRGY++G H FLPSYVMR HGA+QQRE +K PR QL+PVF+
Sbjct: 319 IPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQPVFEA 373
>gi|449482235|ref|XP_004156222.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 958
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/484 (46%), Positives = 298/484 (61%), Gaps = 44/484 (9%)
Query: 1 MWRNLARQSSTRNFKFSPSK--VSQTTNFLKKITS------LETQTLLDSSCPLLGFRRT 52
MW+ +A++ RN +F P +S+ L + L + + SS P G
Sbjct: 1 MWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFGSFEM 60
Query: 53 SFLSSQKSNLGQSNFTQSIYPFGVLTSR---------SYASAAEAIAS---ESELSGSEE 100
S+ L Q ++ +S + FG + +R Y+S AEA++S + + S +
Sbjct: 61 GVGRSEI--LSQEDYYRSRFCFGSMGARIGLNGLCPKGYSSVAEAVSSTDVDEDASVDGK 118
Query: 101 VQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEY 160
VQE + + ++ +++ K GMG KY ML+RRQ+ IE EAWE AAKEY
Sbjct: 119 VQESVQEMSK------------EEKRLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEY 166
Query: 161 QDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLPA 219
++LL DMC+QKLAPNLPYVKSLFLGWFEP +DAI K+Q Q+ K YAPYF LPA
Sbjct: 167 RELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPA 226
Query: 220 DMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277
D M+VITMHKL+GLLM + G VRVVQAAC IG+AIE E RI F + K++ +N
Sbjct: 227 DKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNE 286
Query: 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGC 337
D P+ KEQE+L+K+ L K+K I K DS+PWG++ KVG
Sbjct: 287 NNDQ------PDSERKEQERLRKKXDQLDXKKKHLAAGQIAKRADDSRPWGRELKAKVGA 340
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR-RYGVIECDPLVRKG 396
RLI+LL++TAYIQPP DQL D PPD RPAFVH+LK+ K+ R GVIECDPLV KG
Sbjct: 341 RLIELLIQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKG 400
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEP 456
L+ T R ++IPYMPML+PP+ WRGY++GGH LPS+ MRTHGA+QQR+ K TP+ QL P
Sbjct: 401 LDWTARQIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTP 460
Query: 457 VFQV 460
VF+
Sbjct: 461 VFEA 464
>gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/486 (46%), Positives = 298/486 (61%), Gaps = 36/486 (7%)
Query: 1 MWRNLARQSSTR--NFKFSPSKVSQTTNFLK-----------KITSLETQTLLDSSCPLL 47
MWRN A+Q+ +R N +S++ +FL K E + S +
Sbjct: 41 MWRNFAKQAISRTPNLCLRKFSISRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSFSEV 100
Query: 48 GFRRTSFLSSQKSNLGQSNFTQSI---YPFGVLTSRSYASAAEAIAS-----ESELSGSE 99
GF R S K +G+ + + F V+ + YAS EA E ++S +
Sbjct: 101 GFCREGG-SLVKEGIGERPVSGCLGNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSVFD 159
Query: 100 EVQELIDQF--NEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAA 157
E+QEL+++ EK +S ++ +K GM KY L+ RQIK+ETE+W+QAA
Sbjct: 160 EIQELVEEMRKEEKRAKWRESH----QRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAA 215
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNL 217
EY++LLADMC+ KLAPNLPYVKSLFLGWFEP RD+I +DQ + Y YF+ L
Sbjct: 216 NEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQL 275
Query: 218 PADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDN 275
PADMMA+ITMHKL+G+LMT +G V+VVQAAC +GEAIE E RI +F + KKK +
Sbjct: 276 PADMMAIITMHKLMGMLMTGSGHGSVKVVQAACALGEAIEQEVRIHTFLEKAKKKKGDRS 335
Query: 276 NLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKV 335
D+ +D E I+EQ+ L+K V +LIKKQK +Q IV D KPWG + KV
Sbjct: 336 KKPDDA---ASDAE--IQEQQHLRKNVNNLIKKQKRRQALKIVDSQGDLKPWGSETRAKV 390
Query: 336 GCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVR 394
G RLI+LL++TAYIQPP Q PPD+RPAFVH+LKS E K GRR+G+IECDPL+
Sbjct: 391 GSRLIELLIQTAYIQPPASQSACDPPDLRPAFVHSLKSVGPENKKTGRRFGMIECDPLII 450
Query: 395 KGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
KGLEKT RH++IPYMPMLVPP W GY++G + L S+VMRTHG++ QR ++ QL
Sbjct: 451 KGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRSFVMRTHGSKHQRVAVRRASEEQL 510
Query: 455 EPVFQV 460
+ VF+
Sbjct: 511 KSVFEA 516
>gi|308026130|emb|CBL69150.1| RNA polymerase [Nuphar advena]
Length = 985
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/338 (54%), Positives = 252/338 (74%), Gaps = 13/338 (3%)
Query: 135 TAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI 194
++KY +L+RRQ+K+ETEAWE AA+EY++L+ +MCE+KLAP+LPYVKSLFLGWFEP RDAI
Sbjct: 143 SSKYNLLRRRQVKMETEAWEDAAREYRELIKEMCEKKLAPHLPYVKSLFLGWFEPFRDAI 202
Query: 195 AKDQATAQDKWKHMT--YAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQI 250
+DQ + + K++ YAP+ +LPADMMAVI MHK++ LLM + G VR+V AAC I
Sbjct: 203 KEDQELQRRRKKNLAAAYAPFIGHLPADMMAVIVMHKMMVLLMNGQDDGCVRLVHAACHI 262
Query: 251 GEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
GEAIE E RI +FF+ KK +++ L+ + E K QE L+KRVT+L+KK+K
Sbjct: 263 GEAIEQEVRIYNFFQKIKKSTR-------ENQILSENHENESKNQEALRKRVTNLLKKKK 315
Query: 311 LQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHT 370
++ V+ +V+ D +PWG+D+ K+G R I LL++T Y+QPP++QL + PP+IRPAF HT
Sbjct: 316 IRDVQLLVEAD-DVEPWGRDSHAKLGSRXIDLLIQTXYVQPPLNQLAZGPPEIRPAFRHT 374
Query: 371 LKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
K+ KE +RYG+IECDPLVRKGL+ T RH++IPYMPML+PP W GY++GGH FL
Sbjct: 375 FKTXKKEXDNSVKRYGIIECDPLVRKGLDATARHLVIPYMPMLIPPKKWTGYDKGGHLFL 434
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
PSYVMRTHGA+QQR+ +K P+ QL+ VF+ L S+
Sbjct: 435 PSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLGST 472
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 239/326 (73%), Gaps = 14/326 (4%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y +L+RRQ+K ETEAWE+ +EY+++ +MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+
Sbjct: 143 YGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKE 202
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIE 255
Q + K + YAP+ LPAD MAVI MHK++GL+M G VRVVQAA QIG AIE
Sbjct: 203 QRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIE 262
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E RI SF + T KN + G S ++ ++E+E L+KRV S I+K+K+ +V+
Sbjct: 263 QEVRIHSFLEKT--KNFERHKTVGHS-------QEGLREKEILRKRVKSFIRKKKIIEVQ 313
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
+VK + PWG+D K+G RLI+LL ETAY+Q PV+Q D PPD+RPAF HT K+ T
Sbjct: 314 KLVKNE-EITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVT 372
Query: 376 KEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV 433
KE+ + R+YGVIECDPLV GL++T +HM+IPY+PML+PP W+GY++GG+ FLPSYV
Sbjct: 373 KESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYV 432
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQ 459
MRTHG+R+Q++ +K PR QL+ VF+
Sbjct: 433 MRTHGSRKQQDAVKSVPRRQLQKVFE 458
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa]
gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/329 (52%), Positives = 236/329 (71%), Gaps = 17/329 (5%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A+EY L+ +MCE+KLAPNLPYVKSLFLGWFEPL++AI +
Sbjct: 144 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 203
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GL+M G VRVVQAA QIG AI
Sbjct: 204 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 263
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E RI +F + TK ++ T ++++ E + KE+E L+KRV SLI++++L
Sbjct: 264 EQEVRIHNFLEKTKNHQRKKTMHDVQ----------ESMDKEKEMLRKRVNSLIRRKRLM 313
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+V+ +V ++KPW +D K+G RLI+LL ETAY+QPPVDQ PPD+RPAF H K
Sbjct: 314 EVQNLVIQD-ETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFK 372
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
S TK + ++YGVIECDPL+ GL+ T +HM+IPY PMLVPP WRGY++GGH FLP
Sbjct: 373 SVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLP 432
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
SY+MRTHG+RQQ++ ++ P Q++ VF+
Sbjct: 433 SYIMRTHGSRQQQDAVRSVPGKQMQKVFE 461
>gi|224120774|ref|XP_002330948.1| predicted protein [Populus trichocarpa]
gi|222873142|gb|EEF10273.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 205/446 (45%), Positives = 259/446 (58%), Gaps = 89/446 (19%)
Query: 1 MWRNLARQSSTR------NFKFSPSKVSQTTNFL---KKITSLETQTL--LDSSCPLLGF 49
MWRN+A+Q++ + NF P +T +FL K+ E L+++ P L F
Sbjct: 1 MWRNVAKQATLKSQSKSLNFPSFP----RTYSFLGASKEPIFFEKLKFHSLNNTSPRLSF 56
Query: 50 RRTSFLSSQKSNLGQSNF--------TQSIYPFGVLTSRSYASAAEAIAS---ESELSGS 98
R +S+ + +G+ +F T + G R Y S AEA++S E +SG+
Sbjct: 57 RAIGEISTHEDFMGKPSFIFLRNSSSTNGNWCAG-FCPRGYVSVAEAVSSTDVEDNVSGA 115
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+E +E G+G+ K+ +L+RRQ+KIE EAWE A K
Sbjct: 116 DEEEEATCN-----------------------PGIGSRKHRVLRRRQVKIEAEAWELATK 152
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCE KLAPNLPY+KSLFLGWFEP DAIAK+Q + YAPYF+ LP
Sbjct: 153 EYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRTGKSRQGYAPYFDLLP 212
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
AD M+VI MH+L ++MT G RVV AAC IG+AIE E
Sbjct: 213 ADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDAIEQE------------------- 253
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
EQE L+K+VT LIKKQKL VR IVKG DSKPW DA KVG
Sbjct: 254 -----------------EQENLRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVG 296
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++ + E KG ++YGVI+CDPLV K
Sbjct: 297 SRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQCDPLVLK 356
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGY 421
GLEKT RHM+IPYMPMLVPPL WRGY
Sbjct: 357 GLEKTARHMVIPYMPMLVPPLRWRGY 382
>gi|255574998|ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
Length = 1000
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 230/327 (70%), Gaps = 13/327 (3%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ +EY+ L+ +MCE+KLAPNLPYVK LFLGWFEPL++ I
Sbjct: 149 KYNLLRRRQIREETEAWERMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIKS 208
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K +AP+ LPAD MAVI MHK+VGLLM G V +VQAA QIG AI
Sbjct: 209 EQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVGLLMVGHEDGCVPLVQAAVQIGMAI 268
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RI +F + TK + ++ E L KE+E L+KRV SLI+++KL +V
Sbjct: 269 EQEVRIHNFLEKTKNYQR--------KKTISGAQESLGKEKEILRKRVNSLIRRKKLIEV 320
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ +VK + KPWG+D K+G RLI+LL ETA++QPPV+Q D PPD+RPAF H +
Sbjct: 321 QKLVKNE-EMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADVPPDVRPAFRHRFRIV 379
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ ++YGVIEC+PLV KGL+ + +HM+IPY PMLVPP W+GYN+GGHFFLPSY
Sbjct: 380 KNNPGQKIVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKKWKGYNKGGHFFLPSY 439
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQ 459
+MRTHG+R+Q++ +K PR+ ++ VF+
Sbjct: 440 IMRTHGSRKQQDALKNVPRNHMQKVFE 466
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa]
Length = 882
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 173/329 (52%), Positives = 233/329 (70%), Gaps = 17/329 (5%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A EY+ L+ +MCE+KLAPNLPYVK L LGWFEPL++AI K
Sbjct: 44 KYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEK 103
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GLLM G VRVVQAA QIG AI
Sbjct: 104 EQKMEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAI 163
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E RI +F + TK ++ T + ++ E + KE+E L+KRV SLI++++L
Sbjct: 164 EQEVRIHNFLEKTKNYQRKKTMHEVQ----------ETMDKEKEVLRKRVNSLIRRKRLM 213
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+V+ +VK ++KPW + K+G RLI+LL ETAY+QPPV+Q D PPD+RPAF H K
Sbjct: 214 EVQNLVKQD-ETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFK 272
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
+ TK + ++YGVIECDPL+ GL+ T +HM+IPY PMLVPP W+GY++GGH FLP
Sbjct: 273 TLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLP 332
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
SYVMRTHG+RQQ+ ++ P Q++ VF+
Sbjct: 333 SYVMRTHGSRQQQVAVRSVPGKQMQKVFE 361
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 174/335 (51%), Positives = 239/335 (71%), Gaps = 14/335 (4%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE+ +EY++L +MCE+KLAPNLPYVK LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q T + K + +AP+ L AD MAVI M+K++GLLM A G V+VVQAA QIG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RIQS + + T + D+E LT KE+E L+K+V LI+++KL++V
Sbjct: 259 EQEVRIQSILEKARSNQRT--KVRADTECLT-------KEKEVLRKQVNGLIRRRKLKEV 309
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ ++K + K WG+D K+G RLI+LL+E+A+IQPPV Q DSPPDIRPAF H K
Sbjct: 310 QKLLKKE-EFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPV 368
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K + ++YGV+ECDP+V GL++T +HM+IPY+PMLVPP W+GY++GGHFFLPSY
Sbjct: 369 AKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSY 428
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
VMRTHG+ +Q++ +K Q++ VF+ +L S+
Sbjct: 429 VMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGST 463
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 173/335 (51%), Positives = 238/335 (71%), Gaps = 14/335 (4%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE+ +EY++L +MCE+KLAPNLPYVK LFLGWFEPL++AI +
Sbjct: 139 KYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEE 198
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q T + K + +AP+ L AD MA I M+K++GLLM A G V+VVQAA QIG AI
Sbjct: 199 EQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAI 258
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E RIQS + + T + D+E LT KE+E L+K+V LI+++KL++V
Sbjct: 259 EQEVRIQSILEKARSNQRT--KVRADTECLT-------KEKEVLRKQVNGLIRRRKLKEV 309
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
+ ++K + K WG+D K+G RLI+LL+E+A+IQPPV Q DSPPDIRPAF H K
Sbjct: 310 QKLLKKE-EFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPV 368
Query: 375 TKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K + ++YGV+ECDP+V GL++T +HM+IPY+PMLVPP W+GY++GGHFFLPSY
Sbjct: 369 AKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSY 428
Query: 433 VMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
VMRTHG+ +Q++ +K Q++ VF+ +L S+
Sbjct: 429 VMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGST 463
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 989
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/334 (51%), Positives = 234/334 (70%), Gaps = 19/334 (5%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQIK ETEAWE +EY++ + +M ++KLAPNLP VK+LFLGWFEPL+ AI K
Sbjct: 153 KYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEK 212
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAI 254
+Q + + + + Y + + LPAD MAVI MHK++ LLM +AG VR+VQAA QIG AI
Sbjct: 213 EQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAI 272
Query: 255 ENEARIQSFFKSTK--KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
E E +I SF + TK +KNA+D PE L+KE+E + RV SLIK+++L
Sbjct: 273 EQEIKIHSFLEKTKNIRKNASDL------------PEDLLKEKEIQRNRVKSLIKRKRLF 320
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+ +V DSK W QD K+G RLI+LL++TAYIQ P Q D+PPD+RPAF H K
Sbjct: 321 EAAKLVTSE-DSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFK 379
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
E + +RYGVIECDPLV KG++++ R+MIIPY+PML+PP NW+GY++GG+ FLP
Sbjct: 380 ILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLP 439
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
SYVMRTHG+R+Q++ ++ TP Q++ VF+ L
Sbjct: 440 SYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTL 473
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
AltName: Full=NsRpoT-C; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3;
Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor
gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum]
gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 977
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/329 (51%), Positives = 232/329 (70%), Gaps = 16/329 (4%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+R+Q++ ++ P Q++ V++ L S+
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGST 465
>gi|357123259|ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/326 (51%), Positives = 226/326 (69%), Gaps = 15/326 (4%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
+RQ+K ETEAW +AA+EY+ L +M ++ LAP+LPYVKSLFLGWFEPLRDAIA+DQ +
Sbjct: 113 QRQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAIARDQEVQR 172
Query: 203 DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEAR 259
K YA Y LPA+ ++VI MHK++GLLM+N G VRVVQAA IGEA+E E +
Sbjct: 173 RKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMSNKDGCGSVRVVQAAHSIGEAVEREFK 232
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
+Q+FF+ T+KK NDP L KEQ K +K V SL+K++KL + + +V+
Sbjct: 233 VQAFFQKTRKKGKNGE----------NDP-ALGKEQAKCRKLVKSLVKRRKLTEAQKLVQ 281
Query: 320 GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL-KSFTKEA 378
++ + WG +A VK+G RLI+LL+++A++Q P DQ+ DS PD RPAF H L K +
Sbjct: 282 QEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQIPDSSPDFRPAFKHVLRKPIVENG 341
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSYVMRTHG
Sbjct: 342 RLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHG 401
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVL 464
+ Q+E IK PR QL VF+ +L
Sbjct: 402 VKDQKEAIKSVPRKQLRKVFEALDIL 427
>gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
AltName: Full=NictaRpoT3-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3B;
Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 172/329 (52%), Positives = 231/329 (70%), Gaps = 16/329 (4%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 204
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 205 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 264
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + KE L+KRV SLIK+ ++ +VR ++K
Sbjct: 265 HNFLEKTKK---LQKHMTG-----AQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS 316
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+Q PVDQ D+PPDIRPAF H K T++ K
Sbjct: 317 E-EPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGK 375
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 376 NIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 435
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+R+Q++ ++ P Q++ V++ L S+
Sbjct: 436 SRRQQDAVRGVPTKQMQQVYEALDTLGST 464
>gi|242093768|ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
gi|241915597|gb|EER88741.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
Length = 960
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 166/331 (50%), Positives = 234/331 (70%), Gaps = 15/331 (4%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++RQ+K ETEAW +AA+EY+++ +M +++LAP LPYVKSLF+GWFEPLRDAIA+DQ
Sbjct: 127 LRQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKSLFVGWFEPLRDAIARDQDV 186
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENE 257
+ K YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E
Sbjct: 187 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVERE 246
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
++QSFF+ ++KK +G+++P L KEQ K +KRV +L+K++K+ + + +
Sbjct: 247 FKVQSFFQKSRKKKD-----QGENDP------ALEKEQAKCRKRVKTLVKRRKMSEAQKL 295
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTK 376
V+ ++ + WG +A VK+G RLI+LL+++A++QPP DQ+ DS PDIRPAF H L+ +
Sbjct: 296 VQQELELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQIPDSSPDIRPAFKHVLRQPIIE 355
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+++ VIECD LV G E T RH+ IPY+PMLVPP W+GYN+GGH FLPSY+MRT
Sbjct: 356 NGRLKKKHWVIECDHLVHDGFESTARHVDIPYLPMLVPPKKWKGYNKGGHLFLPSYIMRT 415
Query: 437 HGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
HG + Q++ I PR QL VF+ +L S+
Sbjct: 416 HGVKDQKDAINSVPRKQLRKVFEALDILGST 446
>gi|5292165|gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
Length = 949
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 229/333 (68%), Gaps = 12/333 (3%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 109 ADHRRLRQRQVKAETEAWARAAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVA 168
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPA+ +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 169 RDQDVQRRKRVKHVYAKYLLLLPAEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 228
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + E NDP L KEQ K +K V SL++++K
Sbjct: 229 AVEREYKVQAFFQKTRRKTRSKTESE-------NDP-GLDKEQAKCRKLVKSLVRRRKST 280
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P DQ DS PD RPAF H L
Sbjct: 281 EAQKLVQQEIELEEWGTEAQVKLGTRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLR 340
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 341 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 400
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
YVMRTHG + Q+E IK PR QL VF+ +L
Sbjct: 401 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDIL 433
>gi|30698496|dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group]
gi|37360971|dbj|BAC98394.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
Length = 953
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 233/336 (69%), Gaps = 16/336 (4%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA
Sbjct: 117 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 176
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGE
Sbjct: 177 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 236
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T+KK+A +N+L L KEQ K +KRV SL++++KL
Sbjct: 237 AVEREFKVQTFFQKTRKKSAGENDL------------ALEKEQAKCRKRVKSLVRRRKLT 284
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+ + IV+ ++ + WG ++ VK+G RLI+LL+++A++Q P DQ +S PDIRPAF H L+
Sbjct: 285 EAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLR 344
Query: 373 S-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ +++ VIECDPLV +G E T RH+ IPY+PMLV P W+GY+ GG+ FLPS
Sbjct: 345 QPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPS 404
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
Y+MRTHG + Q+E IK PR QL VF+ L S+
Sbjct: 405 YIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGST 440
>gi|34481849|emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 230/333 (69%), Gaps = 12/333 (3%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 108 AGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVA 167
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LP + +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + N E NDP L KEQ K +K V SL++++KL
Sbjct: 228 AVEREYKVQAFFQKTRRKTRSKNESE-------NDP-ALDKEQAKCRKLVKSLVRRRKLT 279
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P +Q D+ PD RPAF H L
Sbjct: 280 EAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLR 339
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 340 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 399
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
YVMRTHG + Q+E IK PR QL VF+ +L
Sbjct: 400 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDIL 432
>gi|34481851|emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 230/333 (69%), Gaps = 12/333 (3%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A + L++RQ+K ETEAW +AA+EY+ L +M ++ LAP LPYVKSLFLGWFEPLRDA+A
Sbjct: 108 AGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVA 167
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LP + +AVI MHK++GLLM++ G VRVVQAA IGE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQ 312
A+E E ++Q+FF+ T++K + N E NDP L KEQ K +K V SL++++KL
Sbjct: 228 AVEREYKVQAFFQKTRRKTRSKNESE-------NDP-ALDKEQAKCRKLVKSLVRRRKLT 279
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTL- 371
+ + +V+ ++ + WG +A VK+G RLI+LL+++A++Q P +Q D+ PD RPAF H L
Sbjct: 280 EAQKLVQQEIELEEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLR 339
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
K + +++ VIECDPLV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPS
Sbjct: 340 KPIVENGRLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPS 399
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
YVMRTHG + Q+E IK PR QL VF+ +L
Sbjct: 400 YVMRTHGVKDQKEAIKSVPRKQLRKVFEALDIL 432
>gi|110740738|dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 786
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 233/348 (66%), Gaps = 20/348 (5%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEA 473
>gi|449493526|ref|XP_004159332.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 764
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 163/263 (61%), Positives = 200/263 (76%), Gaps = 21/263 (7%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFK 265
++A YF+ LPADMMAVITMHKL+GLLM++ G VRV QAA IGEAIENE RI++FF+
Sbjct: 6 SHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRIRNFFE 65
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
TKK+ PE+L + +KL+K++T L+K+QKLQ+V IVK H DSK
Sbjct: 66 KTKKQ-----------------PEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSK 108
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRY 384
PWG DA VKVGCRLIQLL+ETAYIQPPVDQ+GD+PPD+RPAFVH+LK+ KE+ + G+RY
Sbjct: 109 PWGTDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKESQRLGKRY 168
Query: 385 GVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
GVIECDPLV +G+ KT HMIIPYMPMLVPP W GY++G HFFLPSYVMR GARQQRE
Sbjct: 169 GVIECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQRE 228
Query: 445 TIKMTPRSQLEPVFQVSRVLYSS 467
+K + QL PVF+ +L S+
Sbjct: 229 AVKRASKKQLGPVFKALDILGST 251
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 216/297 (72%), Gaps = 14/297 (4%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+Q + K + YAP+ LPAD MAVI
Sbjct: 1 MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60
Query: 227 MHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHK++GL+M G VRVVQAA QIG AIE E RI SF + TK N + G S+
Sbjct: 61 MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTK--NFERHKTVGHSQ-- 116
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
+ ++E+E L+KRV S I+K+K+ +V+ +VK + PWG+D K+G RLI+LL
Sbjct: 117 -----EGLREKEILRKRVKSFIRKKKIIEVQKLVKNE-EITPWGRDTQAKLGSRLIELLT 170
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGR 402
ETAY+Q PV+Q D PPD+RPAF HT K+ TKE+ + R+YGVIECDPLV GL++T +
Sbjct: 171 ETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAK 230
Query: 403 HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
HM+IPY+PML+PP W+GY++GG+ FLPSYVMRTHG+R+Q++ +K PR QL+ VF+
Sbjct: 231 HMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFE 287
>gi|79602097|ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 895
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 233/348 (66%), Gaps = 20/348 (5%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEA 473
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor
gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 233/348 (66%), Gaps = 20/348 (5%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEA 473
>gi|3341648|emb|CAA06488.1| DNA directed RNA polymerase [Zea mays]
gi|413954906|gb|AFW87555.1| DNA-directed RNA polymerase isoform 1 [Zea mays]
gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase isoform 2 [Zea mays]
Length = 952
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/326 (49%), Positives = 230/326 (70%), Gaps = 15/326 (4%)
Query: 146 IKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKW 205
+K ETEAW +AA+EY+++ +M +++LAP LPYVK+LF+GWFEPLRDAIA+DQ + K
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQS 262
YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E ++QS
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 263 FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
FF+ ++KK ++G+++P L KEQ K +KRV SL+K++K+ + + +V+ +
Sbjct: 245 FFQKSRKK-----KIQGENDP------ALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQEL 293
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKG 381
+ + WG +A VK+G RLI+LL+++A++QPP DQ DS PDIRPAF H L+ +
Sbjct: 294 ELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLK 353
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
+++ VIECD LV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSY+MRTHG +
Sbjct: 354 KKHWVIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKD 413
Query: 442 QRETIKMTPRSQLEPVFQVSRVLYSS 467
Q++ I PR QL VF+ +L S+
Sbjct: 414 QKDAINSVPRKQLRKVFEALDILGST 439
>gi|162457867|ref|NP_001104932.1| RNA polymerase2 [Zea mays]
gi|4559306|gb|AAD22977.1|AF127022_1 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/326 (49%), Positives = 230/326 (70%), Gaps = 15/326 (4%)
Query: 146 IKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKW 205
+K ETEAW +AA+EY+++ +M +++LAP LPYVK+LF+GWFEPLRDAIA+DQ + K
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQS 262
YA Y LPAD +AVI MHK++GLLM++ G VRVVQAA IGEA+E E ++QS
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 263 FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
FF+ ++KK ++G+++P L KEQ K +KRV SL+K++K+ + + +V+ +
Sbjct: 245 FFQKSRKK-----KIQGENDP------ALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQEL 293
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKG 381
+ + WG +A VK+G RLI+LL+++A++QPP DQ DS PDIRPAF H L+ +
Sbjct: 294 ELEEWGTEAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLK 353
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
+++ VIECD LV +G E T RH+ IPY+PMLVPP W+GY++GGH FLPSY+MRTHG +
Sbjct: 354 KKHWVIECDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKD 413
Query: 442 QRETIKMTPRSQLEPVFQVSRVLYSS 467
Q++ I PR QL VF+ +L S+
Sbjct: 414 QKDAINSVPRKQLRKVFEALDILGST 439
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
Length = 990
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/347 (47%), Positives = 234/347 (67%), Gaps = 20/347 (5%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 137 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 196
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 197 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 256
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 257 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 303
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 304 KQLLRKRVNSLIRRKRIIDALKVVKTE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 362
Query: 355 QLGDSPPDIRPAFVHTLKSFTK--EALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK + RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 363 QSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 422
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ ++ VF+
Sbjct: 423 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRVFE 469
>gi|125556302|gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
Length = 950
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 233/361 (64%), Gaps = 41/361 (11%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA
Sbjct: 89 AEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIA 148
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGE 252
+DQ + K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGE
Sbjct: 149 RDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGE 208
Query: 253 AIENEAR-------------------------IQSFFKSTKKKNATDNNLEGDSEPLTND 287
A+E E R +Q+FF+ T+KK+A +N+L
Sbjct: 209 AVERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSAGENDL---------- 258
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
L KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL+++A
Sbjct: 259 --ALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSA 316
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
++Q P DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T RH+ I
Sbjct: 317 FVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEI 376
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYS 466
PY+PMLV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+ L S
Sbjct: 377 PYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGS 436
Query: 467 S 467
+
Sbjct: 437 T 437
>gi|222636003|gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
Length = 946
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 230/356 (64%), Gaps = 41/356 (11%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++RQ+K ETEAW +AA EY++L +M +++LAP LPYVKSLFLGWFEPLRDAIA+DQ
Sbjct: 90 LRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEV 149
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEAIENE 257
+ K YA Y LPAD +AVI MHK++GLLM++ VRVVQAA IGEA+E E
Sbjct: 150 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVERE 209
Query: 258 AR-------------------------IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
R +Q+FF+ T+KK+A +N+L L
Sbjct: 210 NRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKTRKKSAGENDL------------ALE 257
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL+++A++Q P
Sbjct: 258 KEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSP 317
Query: 353 VDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T RH+ IPY+PM
Sbjct: 318 ADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTARHVEIPYLPM 377
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
LV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+ L S+
Sbjct: 378 LVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGST 433
>gi|255585837|ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 188/400 (47%), Positives = 244/400 (61%), Gaps = 32/400 (8%)
Query: 1 MWRNLARQSSTR--NFKFSPSKVSQTTNFLK-----KITSLETQTLLDSSCPLLGFRRTS 53
MWRN+A+Q+ +R + S +S T +FL T + L + L+GF R
Sbjct: 1 MWRNVAKQTISRAQSKSLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYACSSLVGFCRLG 60
Query: 54 FLSSQKSNLGQ-----------SNFTQSIYPFGVLTS----RSYASAAEAIASESELSGS 98
+ + +G+ SN + G L S R Y S AEA++S +++
Sbjct: 61 EIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVSSSTDVEED 120
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
V E + + ++ + + + ++K GMG+ KY MLK+RQ+KIETEAWE A K
Sbjct: 121 VSVVEEVQELLQE---MRREEAREKELIRRKERGMGSKKYQMLKKRQVKIETEAWEWAVK 177
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCE+KLAPNLPY+KSLFLGWFEP RDAI K+Q + +APYF+ LP
Sbjct: 178 EYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNRTAFAPYFDQLP 237
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKLV L+MT G RVV AAC IG AIE E RI F + TKK+N+ D+
Sbjct: 238 ADMMAVITMHKLVALVMTGGEHGCARVVAAACLIGAAIEQEVRIHKFLEKTKKRNSNDSK 297
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ E +KEQEKL+K+VT LIKKQKL VR IVKGH DS+ W QD KVG
Sbjct: 298 KNEEDE-----SNGAVKEQEKLRKKVTDLIKKQKLPAVRQIVKGHDDSQSWTQDTKAKVG 352
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
RLI+LL++TAYIQPP DQL D PPDIRPAF HT ++ T+
Sbjct: 353 SRLIELLIQTAYIQPPADQLADGPPDIRPAFAHTFRNVTQ 392
>gi|356562547|ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 951
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/329 (47%), Positives = 227/329 (68%), Gaps = 14/329 (4%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
K +L+RRQIK ETEA E+ +EY++L +M E+ L PNLP+VK+LFLGWF+PL++AI
Sbjct: 111 KLNLLRRRQIKAETEALEKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEA 170
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---AGEVRVVQAACQIGEA 253
+Q + + K +AP+ ++LPA +AVI MHK++GL+ AG V +V AA QIG A
Sbjct: 171 EQKSKRSKKHKAAFAPHIDSLPAAKLAVIVMHKVMGLVTQEYRRAGCVLLVDAAVQIGMA 230
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E RI F + T+ + GD + + ND ++KL+K V LIK+++L+Q
Sbjct: 231 VEQEVRIHKFLEKTRSHQSKKTE-AGDEDSMDND-------KQKLRKHVNGLIKRRRLKQ 282
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ ++K +S PWG+D K+G RLI+LL+ETA++ PV+Q D+PPDIRPAF H K+
Sbjct: 283 VQMLLK-EKESGPWGRDTQAKLGSRLIELLIETAFVHSPVNQSADTPPDIRPAFRHKFKA 341
Query: 374 FTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+K + + YGVIECDPLV G++K+ +HM++PYMPMLVPP W+GY +GGH FLPS
Sbjct: 342 ISKNPEQKILKNYGVIECDPLVLAGMDKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPS 401
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQV 460
Y+MRTHG+++Q++ +K R Q++ VF+
Sbjct: 402 YIMRTHGSKKQQDVMKNVERKQMQKVFEA 430
>gi|356510622|ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 1043
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 234/350 (66%), Gaps = 14/350 (4%)
Query: 120 SMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYV 179
+L ++ + + G KY +L+RRQI+ ETEAWE+ +EY++L +M E+ LAPNLP+V
Sbjct: 187 GLLMQEEEMRQKGKEREKYNLLRRRQIEAETEAWERMVEEYRELEREMREKMLAPNLPHV 246
Query: 180 KSLFLGWFEPLRDAIAKDQAT--AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM-T 236
K+L LGWFEP R A+ +Q A+ K + + AP+ ++LPAD +AVI MHK++ ++M +
Sbjct: 247 KALLLGWFEPFRAAVEAEQTAHHARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMES 306
Query: 237 NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
G V++V AA IG A+E E RI F + K + EGD+E + L ++E
Sbjct: 307 EEGCVQLVHAAIHIGLALEQEVRIHKFIEGNKSNRSKKT--EGDAE------DSLDSDKE 358
Query: 297 KLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL 356
K + + SL+KK +L++V+ I++ + PW QD K+G RLI+LL++TAY+ PV+Q
Sbjct: 359 KQRNYLNSLLKKNRLREVQMILRKE-ECSPWSQDTQAKLGSRLIELLIDTAYVHSPVNQS 417
Query: 357 GDSPPDIRPAFVHTLKSFTKEALK--GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVP 414
D+PPDIRPAF H K+ + ++YGVI+CDPLV GLEK +HM+IPYMPML+P
Sbjct: 418 ADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGVIQCDPLVLVGLEKCAKHMLIPYMPMLIP 477
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
P W+GY++GGH FLPSY+MRTHG+R+Q++ +K +Q++ VF+ +L
Sbjct: 478 PKKWKGYDKGGHLFLPSYIMRTHGSRKQQDVMKNVNGAQMQKVFETLDIL 527
>gi|356514404|ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 973
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 228/333 (68%), Gaps = 14/333 (4%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ +EY++L +M E+ LAPNLP+VKSL LGWFEP R A+
Sbjct: 134 KYNLLRRRQIEAETEAWEKMVEEYRELEREMREKMLAPNLPHVKSLLLGWFEPFRAAVEA 193
Query: 197 DQAT--AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA-GEVRVVQAACQIGEA 253
+Q A+ K + + AP+ ++LPAD +AVI MHK++ ++M N G V++V AA IG A
Sbjct: 194 EQTAHRARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMENEEGCVQLVHAAVHIGMA 253
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E RI F + K ++ EGD+E + L ++EK + + SL+KK +L++
Sbjct: 254 LEQEVRIHKFVEGNK--SSQSKKTEGDAE------DSLDSDKEKQRNYLNSLLKKNRLRE 305
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ I++ + PW +D K+G RL++LL++TAY+ PV+Q D+PPDIRPAF H K+
Sbjct: 306 VQMILRKE-ECSPWSRDTQAKLGSRLVELLIDTAYVHSPVNQSADTPPDIRPAFRHGFKA 364
Query: 374 FTKEALK--GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ ++YG+I+CDPLV GLEK +HM+IPYMPML+PP W+GY++GGH FLPS
Sbjct: 365 VPWHPGQKFSKKYGIIQCDPLVLVGLEKCAKHMLIPYMPMLIPPKKWKGYDKGGHLFLPS 424
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
Y+MRTHG+++Q++ +K +Q++ VF+ +L
Sbjct: 425 YIMRTHGSKKQQDVMKNVDGAQMQKVFEALDIL 457
>gi|297606283|ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
gi|51534999|dbj|BAD38123.1| putative T7 bacteriophage-type single subunit RNA polymerase [Oryza
sativa Japonica Group]
gi|255677283|dbj|BAF20145.2| Os06g0652000 [Oryza sativa Japonica Group]
Length = 806
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/305 (50%), Positives = 209/305 (68%), Gaps = 16/305 (5%)
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
M +++LAP LPYVKSLFLGWFEPLRDAIA+DQ + K YA Y LPAD +AVI
Sbjct: 1 MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIV 60
Query: 227 MHKLVGLLMTN---AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEP 283
MHK++GLLM++ VRVVQAA IGEA+E E ++Q+FF+ T+KK+A +N+L
Sbjct: 61 MHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKTRKKSAGENDL------ 114
Query: 284 LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLL 343
L KEQ K +KRV SL++++KL + + IV+ ++ + WG ++ VK+G RLI+LL
Sbjct: 115 ------ALEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELL 168
Query: 344 METAYIQPPVDQLGDSPPDIRPAFVHTLKS-FTKEALKGRRYGVIECDPLVRKGLEKTGR 402
+++A++Q P DQ +S PDIRPAF H L+ + +++ VIECDPLV +G E T R
Sbjct: 169 LDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDPLVHEGFESTAR 228
Query: 403 HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSR 462
H+ IPY+PMLV P W+GY+ GG+ FLPSY+MRTHG + Q+E IK PR QL VF+
Sbjct: 229 HVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALD 288
Query: 463 VLYSS 467
L S+
Sbjct: 289 TLGST 293
>gi|168052876|ref|XP_001778865.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669734|gb|EDQ56315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1065
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 248/412 (60%), Gaps = 35/412 (8%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN-- 237
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKK-KNATDN-NLEGD---SEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK K+A N N GD +E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V + VL
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVL 546
>gi|18642494|dbj|BAB84520.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 248/412 (60%), Gaps = 35/412 (8%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN-- 237
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKK-KNATDN-NLEGD---SEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK K+A N N GD +E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V + VL
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVL 546
>gi|18077583|emb|CAC95164.1| RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 248/412 (60%), Gaps = 35/412 (8%)
Query: 73 PFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSIL----------DSSSML 122
P V SR+Y+SA E E EL +++I + NE L D+ S+L
Sbjct: 150 PLQVFDSRAYSSALE----EDELCD----EDIIGKENEHAREALPNGSNWDTGLDADSLL 201
Query: 123 DKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL 182
+++ +K+ K L +RQ+KIETEAW+QAA EY++L+ +MC + LAPNLP+ +SL
Sbjct: 202 EQKSRKR-------KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSL 254
Query: 183 FLGWFEPLRDAIAKDQ---ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN-- 237
L WFEPLRD I ++Q + + Y PY LPADM+AVITMH+L+GLLM +
Sbjct: 255 LLSWFEPLRDGILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQE 314
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKK-KNATDN-NLEGD---SEPLTNDPEKLI 292
G V+V+ AA IGEA+E E RI S KK K+A N N GD +E L + +
Sbjct: 315 HGCVKVIHAAVVIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADL 374
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
K ++ ++ +V L+K+ KL++V I+K +PW VK+G RL++L++ET++++ P
Sbjct: 375 KSKKVVRDKVKKLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAP 434
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GD ++RPAF H K+ R YGVIECD LV ++++ +HM++PYMPML
Sbjct: 435 ACQDGDDFGELRPAFQHKFKNHVLRQNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPML 494
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
V PL W+G+N GG+ +L S +MRT GA++QR + TPR ++ V + VL
Sbjct: 495 VKPLPWKGFNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVL 546
>gi|21425669|emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 715
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/204 (67%), Positives = 160/204 (78%), Gaps = 10/204 (4%)
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
ARI F + TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR I
Sbjct: 1 ARIHRFLEKTKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKI 53
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
VK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E
Sbjct: 54 VKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVE 111
Query: 378 ALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
+KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRT
Sbjct: 112 TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRT 171
Query: 437 HGARQQRETIKMTPRSQLEPVFQV 460
HGA+QQRE +K P+ QLEPVFQ
Sbjct: 172 HGAKQQREAVKRVPKKQLEPVFQA 195
>gi|224116192|ref|XP_002331984.1| predicted protein [Populus trichocarpa]
gi|222832108|gb|EEE70585.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 173/272 (63%), Gaps = 47/272 (17%)
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFN 215
A KEY++LL DMCE KLAPNLPY KSLFLGWFEP DAIAK+Q + YAPYF+
Sbjct: 2 ATKEYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFD 61
Query: 216 NLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKK--- 270
LPAD M+VI MH+L ++MT G RVV AAC IG+AIE E RI + + T+KK
Sbjct: 62 LLPADKMSVIAMHQLGAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTRKKKEK 121
Query: 271 -NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQ 329
N + N +EG+S ++KEQE L+K
Sbjct: 122 ANDSKNGVEGES-------PAVMKEQENLRK----------------------------- 145
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIE 388
KVG RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++ + E KG ++YGVI+
Sbjct: 146 ----KVGSRLIELLLQTAYIQPPSDQLADSPSEPRPAFVHTFRTVSYENKKGAKKYGVIQ 201
Query: 389 CDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRG 420
CDPLV KGLEKT RHM+IPYMPMLVPPL WRG
Sbjct: 202 CDPLVLKGLEKTARHMVIPYMPMLVPPLRWRG 233
>gi|18077581|emb|CAC95163.1| RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/408 (40%), Positives = 240/408 (58%), Gaps = 30/408 (7%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIG 251
+Q ++ + Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKS-------TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL---KKR 301
EA+E E I +S K K + D + D+ + ++ KL K++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
G+ GG+ L S +MRTHGA++ R+TI T R + + Q L S+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGST 572
>gi|168053868|ref|XP_001779356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669272|gb|EDQ55863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1088
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/408 (40%), Positives = 240/408 (58%), Gaps = 30/408 (7%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIG 251
+Q ++ + Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKS-------TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL---KKR 301
EA+E E I +S K K + D + D+ + ++ KL K++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
G+ GG+ L S +MRTHGA++ R+TI T R + + Q L S+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGST 572
>gi|18642493|dbj|BAB84519.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/408 (40%), Positives = 240/408 (58%), Gaps = 30/408 (7%)
Query: 80 RSYASAAEAIASESELSGSEEVQELIDQ---FNEKGVSILDSSSMLDKQPKKKGTGMGTA 136
R+YASAAEA+ + + S E E Q FN+ + ++ + K+K
Sbjct: 175 RTYASAAEAVIDDDDESEEECAPEEPPQSVDFNKAKTAKERAAESRKARWKEKA------ 228
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
L+ RQ KIETEAW QAA EY++L+A+MC++ LAPNLP +SL LGWFEPLRDAIA+
Sbjct: 229 ----LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQ 284
Query: 197 DQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIG 251
+Q ++ + Y P+ LPADM+AVITMH+L+ LLM++ G V+VV AA QIG
Sbjct: 285 EQKDYEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIG 344
Query: 252 EAIENEARIQSFFKS-------TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL---KKR 301
EA+E E I +S K K + D + D+ + ++ KL K++
Sbjct: 345 EAVEQEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEK 404
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
V L+K+QKL+ V +V+ +PWG VKVG RL++L++ET+ ++ P DQ
Sbjct: 405 VKKLVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMT 464
Query: 362 DIRPAFVHTLKSF--TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
++RPAF HTL+++ + R YGVIECDP V L+K+ +HM++PYMPMLV P W
Sbjct: 465 ELRPAFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWT 524
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
G+ GG+ L S +MRTHGA++ R+TI T R + + Q L S+
Sbjct: 525 GFYDGGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGST 572
>gi|21425673|emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/210 (58%), Positives = 157/210 (74%), Gaps = 8/210 (3%)
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
RI +F + TKK+ A + + D E +T +EQEKL+K+VT+L+KKQKL+ V IV
Sbjct: 2 RIHNFLEKTKKQKAEKDKQKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIV 54
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
+ DSKPWGQDA KVG RLI+LL++TAYIQPP +QL PPDIRPAF+H++++ KE
Sbjct: 55 RRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET 114
Query: 379 LKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
RRYG+I+CD LV KGLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTH
Sbjct: 115 KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 174
Query: 438 GARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
GARQQRE +K R+QL+PVF+ L S+
Sbjct: 175 GARQQREAVKRASRNQLQPVFEALDTLGST 204
>gi|168052257|ref|XP_001778567.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670021|gb|EDQ56597.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 861
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 203/351 (57%), Gaps = 33/351 (9%)
Query: 134 GTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDA 193
G K L++RQI ETEAW A +Y++ +A+MC +KLAPNLP + L LGW+EPLRDA
Sbjct: 6 GHNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDA 65
Query: 194 IAKDQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAAC 248
IA++Q + + + +Y P+ LP +AVITMH L+ L+M+N G V+V+QAA
Sbjct: 66 IAEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQAAL 125
Query: 249 QIGEAIENEARIQSFFKSTKKKNATD----------NNLEGDSEPLTNDPEKLIKEQEKL 298
IGEA+E E I+ KKN T + +E LT PE L
Sbjct: 126 HIGEAVEQEVLIRKLRIGKAKKNETKRKGITKDDGISTIESGKVELTTSPE--------L 177
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD 358
+ T + K +KL+ R +++ S PWG KVG RL++L META I+ P D D
Sbjct: 178 PTQATGMQKLRKLRLWRSMLQKASGSDPWGPTIYAKVGSRLLELFMETAVIRVPSD---D 234
Query: 359 SPPD--IRPAFVHTLKSFTKEALKGRR---YGVIECDPLVRKGLEKTGRHMIIPYMPMLV 413
D P F HT K F GR +GV+EC+PLV + ++K+ +++I+PYMPM+
Sbjct: 235 PHVDASFEPVFQHTNKKFV--CTNGRSSTGFGVVECNPLVLEQIDKSVKYVIMPYMPMVS 292
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
P +W+G++ GG+ FL S +MRTHG+++Q + K TPR ++ +FQ VL
Sbjct: 293 KPKHWKGFHDGGYLFLKSSIMRTHGSKEQYDIFKNTPRENMKKIFQALNVL 343
>gi|19547987|gb|AAL87357.1| At1g68990/T6L1_17 [Arabidopsis thaliana]
Length = 305
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/316 (45%), Positives = 197/316 (62%), Gaps = 21/316 (6%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKK 308
KE EK +K+VT L++K
Sbjct: 288 KETEKARKQVTVLMEK 303
>gi|357516853|ref|XP_003628715.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522737|gb|AET03191.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 251
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 153/210 (72%), Gaps = 9/210 (4%)
Query: 264 FKSTKKKNATDNNLEGDSEP--------LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
+ TK K AT + + DS P + EKL KE+++L+ +V SLIKKQK QQ
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
GIVKG +KPWGQ+A VKVG RLIQLL+ETAY++PP ++ GD PDI PAF HTLK+ +
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 376 KEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
++ G RRYGVIECDP+++KGLEKT R+M+IPYMPMLVPP NW GY++G + FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
R HGA+QQR+ +K P++QL+ +F+ L
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTL 210
>gi|357516849|ref|XP_003628713.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522735|gb|AET03189.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 727
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 153/210 (72%), Gaps = 9/210 (4%)
Query: 264 FKSTKKKNATDNNLEGDSEP--------LTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
+ TK K AT + + DS P + EKL KE+++L+ +V SLIKKQK QQ
Sbjct: 1 MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFT 375
GIVKG +KPWGQ+A VKVG RLIQLL+ETAY++PP ++ GD PDI PAF HTLK+ +
Sbjct: 61 GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120
Query: 376 KEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
++ G RRYGVIECDP+++KGLEKT R+M+IPYMPMLVPP NW GY++G + FLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
R HGA+QQR+ +K P++QL+ +F+ L
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTL 210
>gi|188529544|emb|CAP70041.1| RNA polymerase [Selaginella moellendorffii]
Length = 1002
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 198/327 (60%), Gaps = 25/327 (7%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------ 197
RQ K+E +AW+ A +EY+ +L +MC +KLAPNLP+ KSL + WFEP+RD IAK+
Sbjct: 175 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 234
Query: 198 QATAQDKWKHMTYAPYFNN--LPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEA 253
+ +D+ Y P L AD++AVITMH+LV L+M ++G +R+ A IG+A
Sbjct: 235 EEPGEDR---SHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDA 291
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E +I+ K K K L ++EP T + EK ++KL++ + ++ +
Sbjct: 292 VEQEIKIRRALKKRKPKE-----LAEEAEPPTPEEEKKEYLKDKLRRAII-----ERPRN 341
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ I+K S+PW K+GCRLI ++M ++I PV + +IRPAF H LK
Sbjct: 342 VKEILKSLDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRHVLKV 401
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV 433
L R YG I CDP +R ++ + + +++PYMPML+PP W+GY+ G + L S +
Sbjct: 402 PKGGLL--RSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVI 459
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQV 460
MRTHG++QQRE ++ TPR+QL+ VF+
Sbjct: 460 MRTHGSKQQREAVRNTPRAQLQQVFRA 486
>gi|302766019|ref|XP_002966430.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
gi|302792739|ref|XP_002978135.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300154156|gb|EFJ20792.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300165850|gb|EFJ32457.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
Length = 831
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 198/326 (60%), Gaps = 25/326 (7%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------ 197
RQ K+E +AW+ A +EY+ +L +MC +KLAPNLP+ KSL + WFEP+RD IAK+
Sbjct: 4 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 63
Query: 198 QATAQDKWKHMTYAPYFNN--LPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEA 253
+ +D+ Y P L AD++AVITMH+LV L+M ++G +R+ A IG+A
Sbjct: 64 EEPGEDR---SHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDA 120
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+E E +I+ K K K L ++EP T + EK ++KL++ + ++ +
Sbjct: 121 VEQEIKIRRALKKRKPKE-----LAEEAEPPTPEEEKKEYLKDKLRRAII-----ERPRN 170
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ I+K S+PW K+GCRLI ++M ++I PV + +IRPAF H LK
Sbjct: 171 VKEILKSLDPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRHVLKV 230
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV 433
L R YG I CDP +R ++ + + +++PYMPML+PP W+GY+ G + L S +
Sbjct: 231 PKGGLL--RSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVI 288
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQ 459
MRTHG++QQRE ++ TPR+QL+ VF+
Sbjct: 289 MRTHGSKQQREAVRNTPRAQLQQVFR 314
>gi|357516855|ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 259
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 176/276 (63%), Gaps = 37/276 (13%)
Query: 1 MWRNLARQSSTRNFKFSPS------KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSF 54
MW LA+++S+R F PS + S NF +KI P F +
Sbjct: 1 MWSKLAKRASSRRFIL-PSQSSTSLRFSHQHNFPEKILR----------HPFSRFSQVGI 49
Query: 55 LSSQKSNLGQSNFTQSIYPFGVLTS-----RSYAS-AAEAIAS---ESELSGSEEV-QEL 104
+S+ LG+SNF+ S +PF + R+Y S AAEAI S E + SGSEEV Q+L
Sbjct: 50 FTSEY-KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKL 108
Query: 105 IDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLL 164
+DQ +++ + +KK + KY ML+RRQIKIETEAWE+AA+EYQ+LL
Sbjct: 109 LDQM------VIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELL 162
Query: 165 ADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAV 224
DM EQKLAPNLPY+KSLFLGWFEPL++AIA DQ +D +++APYFN LP DMMAV
Sbjct: 163 EDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAV 222
Query: 225 ITMHKLVGLLMTNA---GEVRVVQAACQIGEAIENE 257
ITMHKL+GLLMTN+ G RV+QAACQIGEAIE+E
Sbjct: 223 ITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHE 258
>gi|147820783|emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
Length = 1312
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 147/208 (70%), Gaps = 12/208 (5%)
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
+ + RI SF + TK N + G S+ + ++E+E L+KRV S I+K+K+ +
Sbjct: 586 VNEKVRIHSFLEKTK--NFERHKTVGHSQ-------EGLREKEILRKRVKSFIRKKKIIE 636
Query: 314 VRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
V+ +VK + PWG+D K+G RLI+LL ETAY+Q PV Q D PPD+RPAF HT K+
Sbjct: 637 VQKLVKNE-EITPWGRDTQAKLGSRLIELLTETAYVQTPVXQSADCPPDVRPAFRHTFKT 695
Query: 374 FTKEALK--GRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
TKE+ + R+YGVIECDPLV GL++T +HM+IPY+PML+PP W+GY++GG+ FLPS
Sbjct: 696 VTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPS 755
Query: 432 YVMRTHGARQQRETIKMTPRSQLEPVFQ 459
YVMRTHG+R+Q++ +K PR QL+ VF+
Sbjct: 756 YVMRTHGSRKQQDAVKSVPRRQLQKVFE 783
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y +L+RRQ+K ETEAWE+ +EY+++ +MCE+KLAPNLPYVK+LFLGWFEPLR+AI K+
Sbjct: 143 YGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKE 202
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIE 255
Q + K + YAP+ LPAD MAVI MHK++GL+M G VRVVQAA QIG AIE
Sbjct: 203 QRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIE 262
Query: 256 NEAR 259
EA+
Sbjct: 263 QEAK 266
>gi|449531519|ref|XP_004172733.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like,
partial [Cucumis sativus]
Length = 234
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/239 (50%), Positives = 156/239 (65%), Gaps = 16/239 (6%)
Query: 1 MWRNLARQSSTRNFK----FSPS---KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRN+ + +++R K FS S KV++ FL +I S + L++ C G R
Sbjct: 1 MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVL-TSRSYASAAEAIASESELSGSEEVQELIDQFN 109
FL QK SNF S P +GVL ++ YA+AAEA E +LSGSEE+QE+++ N
Sbjct: 61 FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
++ D + KQPK G KY ML++RQIKIETEAWE+AAKEYQDL+AD+CE
Sbjct: 121 KQ-----DKVELHFKQPKGMVDGNRDTKYDMLRKRQIKIETEAWEEAAKEYQDLIADICE 175
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
QKLAPNLPY+KSLFLGWF+PLRDAI +Q + + K ++A YF+ LPADMMAVITMH
Sbjct: 176 QKLAPNLPYMKSLFLGWFQPLRDAIVAEQESVKFKRSSPSHALYFHLLPADMMAVITMH 234
>gi|125562883|gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
Length = 845
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 109/128 (85%), Gaps = 2/128 (1%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR 191
G+G KY ML+RRQI+IETEAWEQAA+EY++LLADMC+QKLAPNLPYVKSLFLGWFEPLR
Sbjct: 113 GVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLR 172
Query: 192 DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D I +Q ++ ++A YFN LPADMMAVITMHKL+GLLMT +G+ VRV+QAACQ
Sbjct: 173 DQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 232
Query: 250 IGEAIENE 257
IGEAIE+E
Sbjct: 233 IGEAIEHE 240
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 70/134 (52%), Gaps = 41/134 (30%)
Query: 334 KVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
+VG RLI+L++ETAYIQPP Q D PPDIRPAF H +++ +E
Sbjct: 240 EVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE---------------- 283
Query: 394 RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ 453
+ Y++G H FLPSYVMRTHGARQQR+ ++ PR Q
Sbjct: 284 -------------------------QQYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQ 318
Query: 454 LEPVFQVSRVLYSS 467
++ VF+ L S+
Sbjct: 319 MQSVFEALNTLGST 332
>gi|224108381|ref|XP_002333403.1| predicted protein [Populus trichocarpa]
gi|222836443|gb|EEE74850.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 16/202 (7%)
Query: 61 NLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSILD 117
N G +N + G R Y S AEA++S E +SG++EVQEL + ++
Sbjct: 11 NSGSTNGNRC----GGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE------ 60
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DMCE KLAPNLP
Sbjct: 61 -EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLP 119
Query: 178 YVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
Y+KSLFLGWFEP DAIAK+Q + YAPYF+ LPAD M+VI MH+L ++MT
Sbjct: 120 YMKSLFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTG 179
Query: 238 A--GEVRVVQAACQIGEAIENE 257
G RVV AAC IG+AIE E
Sbjct: 180 GEHGCARVVTAACMIGDAIELE 201
>gi|224116184|ref|XP_002331982.1| predicted protein [Populus trichocarpa]
gi|222832106|gb|EEE70583.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 95/128 (74%), Gaps = 2/128 (1%)
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
+G+ KY +L+RRQ+KIE EAWEQA KEY++LL DMCE KLAPNLPY+KSLFLGWFEP D
Sbjct: 5 LGSGKYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTD 64
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQI 250
AIAK+Q + YA YF+ LPAD M+VI MH+L +++T G RVV AAC I
Sbjct: 65 AIAKEQELIRTGKSRQGYASYFDLLPADKMSVIAMHQLAAMVVTGGEHGCARVVTAACMI 124
Query: 251 GEAIENEA 258
G+AIE +A
Sbjct: 125 GDAIEQDA 132
>gi|224102445|ref|XP_002334173.1| predicted protein [Populus trichocarpa]
gi|222869927|gb|EEF07058.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
KY +L+RRQI+ ETEAWE+ A+EY L+ +MCE+KLAPNLPYVKSLFLGWFEPL++AI +
Sbjct: 38 KYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIER 97
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAI 254
+Q + K + ++P LPAD MAVI MHK++GL+M G VRVVQAA QIG AI
Sbjct: 98 EQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAI 157
Query: 255 ENE 257
E E
Sbjct: 158 EQE 160
>gi|2330562|emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 282
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENE 257
G ++VVQAA IG AIE E
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQE 282
>gi|224105535|ref|XP_002333804.1| predicted protein [Populus trichocarpa]
gi|222838549|gb|EEE76914.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 292 IKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQP 351
++EQE L+K+VT LIKKQKL VR IVK DSKP DA KVG RLI+LL++TAYIQP
Sbjct: 1 MEEQENLRKKVTDLIKKQKLPAVRKIVKWKDDSKPCNADARAKVGSRLIELLLQTAYIQP 60
Query: 352 PVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKT 400
P DQL DSP + RPAFVHT ++ + KG ++Y VI+CDPLV KGLEKT
Sbjct: 61 PCDQLADSPSEPRPAFVHTFRNVSYVNKKGVKKYVVIQCDPLVLKGLEKT 110
>gi|224114299|ref|XP_002332393.1| predicted protein [Populus trichocarpa]
gi|222832716|gb|EEE71193.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Query: 92 ESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETE 151
E +SG++EVQEL + ++ ++ + G+G+ K+ +L+RRQ+KIE E
Sbjct: 62 EDNVSGADEVQELQPEMRKE-------EEHFRRRRLRANPGIGSRKHRVLRRRQVKIEAE 114
Query: 152 AWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
AWE A KEY++LL DMCE LAPNLPY+KSLFLGWFEP DAI ++ + +K++
Sbjct: 115 AWELATKEYKELLKDMCEHNLAPNLPYMKSLFLGWFEPFTDAIEQETEDNECPYKNI 171
>gi|224072667|ref|XP_002335917.1| predicted protein [Populus trichocarpa]
gi|222836347|gb|EEE74754.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD 358
+K+VT LIKKQKL VR IVKG DSKPW DA KVG RLI+LL++TAYIQPP DQL D
Sbjct: 14 RKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLAD 73
Query: 359 SPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
+ + RPAFVHT ++ + E +YGVI
Sbjct: 74 TSSEPRPAFVHTFRTVSYE----NKYGVI 98
>gi|224110560|ref|XP_002333067.1| predicted protein [Populus trichocarpa]
gi|222838328|gb|EEE76693.1| predicted protein [Populus trichocarpa]
Length = 82
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 50/59 (84%)
Query: 401 GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQ 459
RHM+IPYMPMLVPPL WRGY++G H FLPSYVMR HGA+QQRE +K TPR QL+ VF+
Sbjct: 3 ARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRTPRKQLQAVFE 61
>gi|412990986|emb|CCO18358.1| predicted protein [Bathycoccus prasinos]
Length = 1109
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 159/369 (43%), Gaps = 65/369 (17%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
++ + RQ ++E E+ K Y+++ M + NLP V+ L ++EPL + +
Sbjct: 164 EFVARRERQRRVENESVNDEIKRYREMSEQMAQVGAGANLPAVRQLLTSFYEPLMVGVER 223
Query: 197 DQATAQD---KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN---------------- 237
+Q + + Y PY L AD +AVI++H ++ +LM
Sbjct: 224 EQNMISEGVPGFDRRVYGPYLQLLGADKIAVISLHTIISMLMRGVEKTRGDVFRDHSREH 283
Query: 238 --AGEVRVVQAACQIGEAIENE---ARIQSFFK-STKKKNATDNNLEGDSEPLTND---- 287
AG V+ V+ A +G IE E +R+Q+ K + + A N+E E +
Sbjct: 284 GEAGSVKFVRLASSLGRVIEAEVNLSRLQTREKLLSARYRAGLINMEDIVETFNQERHAG 343
Query: 288 PEKLIKEQEKLKK--------RVTSLIKK-------------QKLQQVRGI---VKGHVD 323
++I E+E+ +K R +LIK+ +KL+ VR + K +D
Sbjct: 344 ENEMIAEREREEKIANIDREIREKNLIKESDIRSTMLQRDSTKKLKSVRAVSEQAKKALD 403
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR-PAFVH-------TLKSFT 375
+ WG +KVG +I ++++ I+ P + ++ I PAF H + +
Sbjct: 404 NADWGSVLHLKVGAAIIAIVLDVCKIKVPGPETAETGEKIEVPAFYHDYSLEPNAYQGWK 463
Query: 376 KEALKGRRYGVIECDP----LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
++A R G + V R I + PM+VPP W YN+GG+ S
Sbjct: 464 QKASPNNRSGTVHWHDSFFRFVHSATLARARSAITRHKPMIVPPRPWESYNKGGYLNSNS 523
Query: 432 YVMRTHGAR 440
VMR + +R
Sbjct: 524 VVMRGNYSR 532
>gi|224114325|ref|XP_002332398.1| predicted protein [Populus trichocarpa]
gi|222832721|gb|EEE71198.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 13/125 (10%)
Query: 222 MAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKK----NATDN 275
M+VI MH+L ++MT G RV AAC IG+AIE E RI + + T+KK N + N
Sbjct: 1 MSVIAMHQLAAMVMTGGEHGCARVGTAACMIGDAIEQEIRIHNILEKTRKKKEKANDSKN 60
Query: 276 NLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKV 335
+EG+S + +KEQE L+K+VT LIKKQKL VR IVK DSKPW DA KV
Sbjct: 61 GVEGESPAV-------MKEQENLRKKVTDLIKKQKLPAVRKIVKAKDDSKPWNADARAKV 113
Query: 336 GCRLI 340
LI
Sbjct: 114 ITILI 118
>gi|149940226|emb|CAJ13817.1| DNA-directed RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 174
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 163 LLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMM 222
++ DMCEQKLAPNLPYVKSLFLGWFEPL++AI+ +Q ++ YAP F+ LPADMM
Sbjct: 106 MMTDMCEQKLAPNLPYVKSLFLGWFEPLKNAISGEQDLCKEGKNRGAYAPQFDQLPADMM 165
Query: 223 AVITMHKLV 231
+ITMHKL+
Sbjct: 166 TIITMHKLM 174
>gi|224157115|ref|XP_002337803.1| predicted protein [Populus trichocarpa]
gi|222869831|gb|EEF06962.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 74/133 (55%), Gaps = 33/133 (24%)
Query: 259 RIQSFFKSTKKK----NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
RI + + T+KK N + N +EG+S ++KEQE L+K
Sbjct: 5 RIHNILEKTRKKKEKANDSKNGVEGESP-------AVMKEQENLRK-------------- 43
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
K DSKPW DA KVG RLI+LL++TAYIQPP DQL DSP + RPAFVHT ++
Sbjct: 44 ----KAKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV 99
Query: 375 TKEALKGRRYGVI 387
+ E +YGVI
Sbjct: 100 SYE----NKYGVI 108
>gi|401883409|gb|EJT47618.1| Rpo41 [Trichosporon asahii var. asahii CBS 2479]
Length = 1321
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 26/285 (9%)
Query: 213 YFNNLPADMMAVIT---MHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y + LP +A+IT + +++G N G +++++ +G AIE E R +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDG-MKLLRGVMGVGRAIEAEYRADMIRSIAGE 491
Query: 270 KNATDNNLEGDSEPLTNDPEKLI---------KEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
K+ + +P T P +L +E+EK K + Q ++
Sbjct: 492 KSRLWQKV---IDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLR 548
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETA-YIQPPVDQL-GDSPPDIRPAFVHTLKSFTKEA 378
V + PW + +G L++ L++TA ++ D L G+ + +PAF H+ E
Sbjct: 549 AVWTPPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSF-----EY 603
Query: 379 LKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
++GR+ GVI+ +P+V K L R +I P ++PMLVPP +W+ +N+G + +P+ +MR
Sbjct: 604 VRGRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNSWKAWNQGPYLTIPTTMMRF 663
Query: 437 HGARQQRETIKMTPRS-QLEPVFQVSRVLYSSIFYDLFNLYRLII 480
+ +Q+ ++ +S LEPVF VL S+ + N++ +++
Sbjct: 664 KDSVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVL 708
>gi|406698149|gb|EKD01391.1| Rpo41 [Trichosporon asahii var. asahii CBS 8904]
Length = 1321
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 141/285 (49%), Gaps = 26/285 (9%)
Query: 213 YFNNLPADMMAVIT---MHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y + LP +A+IT + +++G N G +++++ +G AIE E R +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDG-MKLLRGVMGVGRAIEAEYRADMIRSIAGE 491
Query: 270 KNATDNNLEGDSEPLTNDPEKLI---------KEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
K+ + +P T P +L +E+EK K + Q ++
Sbjct: 492 KSRLWQKV---IDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLR 548
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETA-YIQPPVDQL-GDSPPDIRPAFVHTLKSFTKEA 378
V + PW + +G L++ L++TA ++ D L G+ + +PAF H+ E
Sbjct: 549 AVWTPPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSF-----EY 603
Query: 379 LKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
++GR+ GVI+ +P+V K L R +I P ++PMLVPP W+ +N+G + +P+ +MR
Sbjct: 604 VRGRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNPWKAWNQGPYLTIPTTMMRF 663
Query: 437 HGARQQRETIKMTPRS-QLEPVFQVSRVLYSSIFYDLFNLYRLII 480
+ +Q+ ++ +S LEPVF VL S+ + N++ +++
Sbjct: 664 KDSVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVL 708
>gi|303279985|ref|XP_003059285.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459121|gb|EEH56417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 838
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 128/282 (45%), Gaps = 41/282 (14%)
Query: 180 KSLFLGWFEPLRDAIAKDQATAQDK---WKHMTYAPYFNNLPADMMAVITMHKLVGLLMT 236
++ + EPL AI K+QA + K Y P+ L D +AVIT+H ++ LM
Sbjct: 22 RNFLHNFLEPLSRAIEKEQAEIRKKVPGADRTNYGPFMLMLNPDKLAVITLHAVISQLMM 81
Query: 237 N------------AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
G+ + V+ ++GEA++ E + + K +
Sbjct: 82 GDDRVKFSGDNGQVGKSKFVRVVERLGEAVQAEVNLSRLKQRGKVR-------------- 127
Query: 285 TNDPEKLIKEQEKLKKRVT--SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQL 342
DP + + + V+ SL K ++ V + ++ WG A VK+G L +L
Sbjct: 128 PKDPSERERRFREETAGVSAKSLSKLTTVRSVAKFARRALNDSDWGMTARVKLGSVLAKL 187
Query: 343 LMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG- 401
L+ETA I+ P + G+ +I+PAF H + ++ +RYG++ P +E
Sbjct: 188 LVETAKIEVPDPESGEL--EIKPAFEHHYEYVNRQ----QRYGMVSWHPAFFDYIEHEDM 241
Query: 402 RHM---IIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
RH ++ YMPM+ PP W +++GG+ ++VMR + R
Sbjct: 242 RHAQMSLVRYMPMVTPPRPWSRFDQGGYLCSETFVMRGNYTR 283
>gi|255080246|ref|XP_002503703.1| predicted protein [Micromonas sp. RCC299]
gi|226518970|gb|ACO64961.1| predicted protein [Micromonas sp. RCC299]
Length = 899
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 62/328 (18%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+ RQ + E A ++ + Y++ + LP + L G+F PL AI +Q
Sbjct: 27 LEERQRRNEILAVDREVERYKEEARITRRRGGGAELPLGRRLLQGFFAPLTSAIRLEQEH 86
Query: 201 AQDKWKHM---TYAPYFNNLPADMMAVITMHKLVGLLM-----------TNAGEVRVVQA 246
+ K + + Y P+ L D +AVIT+H ++ LM AG + V+A
Sbjct: 87 VRLKVRGVDRSNYGPFLLMLNPDKLAVITLHTVISQLMKGEQMFGEPNEAQAGMCKFVRA 146
Query: 247 ACQIGEAIENE---ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+G++++ E AR++ + TKK+ LE + P +D +K +
Sbjct: 147 VEMLGQSVQAEVNLARLRQRARLTKKRY-----LESKNGPHVHD--------RFMKVNME 193
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SL ++ V + + ++ WG KVG L++LL+ TA I+ P PD
Sbjct: 194 SLKTLTTVRGVARLARTALNDSDWGGVTRSKVGAALVKLLLTTARIRVP-------GPDG 246
Query: 364 R----PAFVHTLKSFTKEALKGRRYGVI----------ECDPLVRKGLEKTGRHMIIPYM 409
PAF H + K K RYGVI + + ++R L + YM
Sbjct: 247 ELIEVPAFYH---DYVKH--KAHRYGVISWHDAFFTFMDDEAMIRATLSP------VRYM 295
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
PM+ PP W +N GG+ S VMR H
Sbjct: 296 PMVTPPRPWTRFNAGGYLRTESIVMRGH 323
>gi|145350935|ref|XP_001419848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580080|gb|ABO98141.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 922
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
R+Q + E A E+ Y++L + LP V+ L ++ PL +A+ ++Q +
Sbjct: 63 RKQREAENLAVEREVMRYKELARKTFAAGIGAQLPVVQKLLASFYVPLVEALTEEQEKIR 122
Query: 203 DKW---KHMTYAPYFNNLPADMMAVITMHKLVGLLMT----NAGEVRVVQAACQIGEAIE 255
Y Y L D +AV+T+H + LM N G + + A Q+G A++
Sbjct: 123 GNVPGVDRRVYGHYLGLLEPDKLAVLTLHATLSTLMKGDGRNNGAAKFISVADQVGSAVQ 182
Query: 256 NEA---RIQSFFKSTKK--KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
E R++S K+ K+ + + N EG+ + + + E R+ + K
Sbjct: 183 AEVNLERMRSAEKAAKEAFRRSRLVNTEGNVKEIDDAAEH----------RINLALDTSK 232
Query: 311 LQQVRGIVKGH---VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF 367
+ ++ + K +++ WG++ +K+G L+ LM TA I P D+ G+ PAF
Sbjct: 233 MNTIKSVSKHARQALENAEWGREIRLKIGTVLLTALMNTAKIGVP-DEKGELL--TLPAF 289
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIP--YMPMLVPPLNWRGYNR 423
H K YG++ + + + E R ++P + PM++PP W YN+
Sbjct: 290 YHDYKEAG--------YGMLHWHDSIYRFINTETMTRAALVPVRHFPMVIPPRYWERYNK 341
Query: 424 GGHFFLPSYVMR 435
GG+ + MR
Sbjct: 342 GGYLRADNLCMR 353
>gi|290976388|ref|XP_002670922.1| predicted protein [Naegleria gruberi]
gi|284084486|gb|EFC38178.1| predicted protein [Naegleria gruberi]
Length = 933
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 142/326 (43%), Gaps = 66/326 (20%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ----- 198
+Q ++ET + + A Y+ L + + LP K + L W+EPL I + Q
Sbjct: 130 KQKELETRSMDIAKARYRKDLKSATSRNQSACLPPAKKIMLEWYEPLTKIIREKQDEVNF 189
Query: 199 --------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVV 244
T+QD + Y ++ A+ +A+IT+H+L+ + G V
Sbjct: 190 SCSKKKSSSTNTTTTTSQDNF---AIPLYLTSISAEKLAIITLHELLASCLKERGGSPVS 246
Query: 245 QAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS 304
+ QIG+AI+ E ++ K+ N KLI + + + +
Sbjct: 247 SISYQIGDAIQAEINVEKL----KRTNYF----------------KLIIKNQMIYHNINK 286
Query: 305 LIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR 364
I K KL + K + LV++G LIQL + TA++ L +P +
Sbjct: 287 -ISKLKLNEYVTFTK----------EELVQLGSYLIQLALSTAHVP-----LISNPKETV 330
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKTGRHMIIP-YMPMLVPPLNWRGY 421
PAF+H ++ T+ + + GV+E D L G E + ++ P ++PMLVPP W
Sbjct: 331 PAFIH--RNITRNS---KIIGVVEPDDNLLHLIGREHVAQEILYPNHLPMLVPPNPWTSS 385
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIK 447
GG+ L +MRT G+ Q T+K
Sbjct: 386 TAGGYIALKVLIMRTRGSHLQAYTLK 411
>gi|449016962|dbj|BAM80364.1| single subunit mitochondrial RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 1252
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 132/319 (41%), Gaps = 42/319 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--- 200
R+ +E A E A Y+ E+ +L + L L WF P+ AI ++Q
Sbjct: 420 REFNLEERAVEAAVARYRSFTQSALERGDINSLQPSQRLLLSWFFPVTMAIHQEQERIRR 479
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+ + P+ L +++AVI +H+ +G ++ + V ++ A +G +++ E +
Sbjct: 480 GELSYDGNVCGPHLLRLKPEVLAVIALHETLGRVLQDRAGVAFIRVASAVGRSVQAEINL 539
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK--LQQVRGI- 317
Q + L ++ Q++ +R +L + V I
Sbjct: 540 QRLRE------------------LHSEQRHRQLPQDRALRRTLALASTGSGGSRAVAAIN 581
Query: 318 ---VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP--AFVHTLK 372
+ +D+ W +KVG LI +M+ A I D+P + AF H +
Sbjct: 582 LAAKRMELDTATWDDSVTIKVGSVLISFVMKHALIHI------DTPTGKQAVQAFRHGYR 635
Query: 373 SFTKEALKGRRYGVIECDPLVRKGL---EKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFF 428
+E R+ GVIE V L E R I+P + PMLVPP W YN GG+
Sbjct: 636 PLQREP---RKVGVIELHKSVLNLLLANESDLRETILPRFQPMLVPPRPWTAYNSGGYLR 692
Query: 429 LPSYVMRTHGARQQRETIK 447
VMR G+R Q E +K
Sbjct: 693 PRGLVMRVRGSRLQLEALK 711
>gi|270358663|gb|ACZ81452.1| Rpo41 [Cryptococcus heveanensis]
Length = 1256
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 145/311 (46%), Gaps = 52/311 (16%)
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIE 255
+A K K Y LP + +A+IT+ ++ + M+ +G + + ++ +G+A+E
Sbjct: 308 SASSKMKRSVLVMYLQLLPVEKLALITILEV--MRMSGSGGISDGMKALRGMLAVGKAVE 365
Query: 256 NEARIQSFFKSTKKKNATDNNLEG-DS-------EPLTNDPEKLIKEQEKLKKRVTSLIK 307
E R ++ N+ G DS +P T P + + + +R+ +K
Sbjct: 366 TEFRAETI-----------KNIAGVDSHHWLRTIDPQTQKPSRQLVG--SVWRRIGEQVK 412
Query: 308 KQKLQQVRGIVKG--HVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
KL++ + H D + PW Q A + VG L+ L++ A V+++G +P
Sbjct: 413 TSKLEETSDSLSTATHDDLHQVWTPPWSQMAQLGVGSELVDALLKVA----KVERVGRNP 468
Query: 361 P------DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
+ +PAF H E ++G++ GVI+ +P+V L + ++I ++PML
Sbjct: 469 ETGEEVVEEQPAFTHAY-----EYIRGKKLGVIKHNPVVAARLARDSVGVVIHPKHLPML 523
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQVSRVLYSSIFYD 471
V P W +N GG+ +MR + +Q+ +K + + LEPVF VL S+ +
Sbjct: 524 VEPKPWTSHNNGGYLLHSVPIMRYKESAEQQSYLKTASEQGHLEPVFHGLDVLSSTAWSI 583
Query: 472 LFNLYRLIINF 482
++ +I+N
Sbjct: 584 NRKVFDVILNV 594
>gi|75706720|gb|ABA25911.1| putative mitochondrial T-odd phage-like single-subunit RNA
polymerase [Naegleria sp. TES-2005]
Length = 968
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 66/329 (20%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ----- 198
+Q ++ET + + A + Y+ L + LP K + L W+EPL I + Q
Sbjct: 159 KQKELETRSMDIAKERYRKDLKSATNRNQGACLPPAKKILLEWYEPLTKLIREKQDEVNF 218
Query: 199 -----------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV 241
T H + + ++ A+ +A+IT+H+L+ +
Sbjct: 219 SAKKKSTISAADSASAANTTSGAVDHFSIPLHLTSISAEKLAIITLHELLASCLRERAGS 278
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
V + +G+AI+ E ++ K+ N KLI + + +
Sbjct: 279 AVSSLSYVVGDAIQAEINMEKL----KRTNHF----------------KLILKNQMVYHN 318
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
+ L K KL + K + L+++G LIQL ++TA + L D+P
Sbjct: 319 INKL-SKLKLNEYVSFSK----------EELIRLGSYLIQLTLDTAKVP-----LVDNPK 362
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRK--GLEKTGRHMIIP-YMPMLVPPLNW 418
+ PAF+H K+ ++ G+ G+IE D + + G E + ++ P ++PMLVPP W
Sbjct: 363 ESVPAFIH--KNVSR---AGKVIGMIEPDENLIQLVGREHLTQEILFPNHLPMLVPPNPW 417
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIK 447
GG+ L +MRT G+ Q +K
Sbjct: 418 TSSVSGGYIALKVMIMRTRGSHLQSYILK 446
>gi|56566235|gb|AAN75149.2| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1202
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV K + R + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVG------KNEGGRILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|46403038|gb|AAS92533.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 32/296 (10%)
Query: 191 RDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQA 246
+ A+A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 266 KAAVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRG 323
Query: 247 ACQIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
+G+A+E E R ++ S D + S L K I EQ KR
Sbjct: 324 MVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKR 383
Query: 302 VTSLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD-- 354
+ K + R + H D + W + + VG L+ L++ A ++
Sbjct: 384 LG------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDR 437
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPML 412
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PML
Sbjct: 438 NTGEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPML 492
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
V P W +N+GG+ VMR + +Q++ +K + LEPVF VL S+
Sbjct: 493 VEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|25573208|gb|AAN75176.1| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1180
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 34/275 (12%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV + GI+ + D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGK-------NEGGGILPPNHD 398
Query: 324 ------SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFT 375
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 399 DMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAY---- 454
Query: 376 KEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYV 433
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ V
Sbjct: 455 -EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPV 513
Query: 434 MRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
MR + +Q++ +K + LEPVF VL S+
Sbjct: 514 MRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|25777802|gb|AAN75608.1| RPO41 [Cryptococcus neoformans var. neoformans]
Length = 1202
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV K + + + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVG------KNEGDKILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|58266656|ref|XP_570484.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110362|ref|XP_776008.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|25956307|gb|AAN75721.1| RPO41 [Cryptococcus neoformans var. neoformans]
gi|50258676|gb|EAL21361.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226717|gb|AAW43177.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1180
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV K + + + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVG------KNEGDKILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|58266658|ref|XP_570485.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110360|ref|XP_776007.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258675|gb|EAL21360.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226718|gb|AAW43178.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1202
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV K + + + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVG------KNEGDKILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEMITELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|54112152|gb|AAV28755.1| RPO41p [Cryptococcus gattii]
Length = 1180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KR+ K + R + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLG------KGEAERILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|334362790|gb|AEG78585.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KR+ K + R + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLG------KGEAERILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|334362824|gb|AEG78618.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 288 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 345
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KR+ K + R + H D
Sbjct: 346 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLG------KGEAERILPPNHDD 399
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTK 376
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 400 MQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTARDRNTGEIVMELQPAFTHAY----- 454
Query: 377 EALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ VM
Sbjct: 455 EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVM 514
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R + +Q++ +K + LEPVF VL S+
Sbjct: 515 RYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|405119910|gb|AFR94681.1| mitochondrial-related RNA polymerase [Cryptococcus neoformans var.
grubii H99]
Length = 1324
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 34/275 (12%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSF----- 263
Y + LP D +A+IT+ ++ + M+ +G + +V++ +G+A+E E R ++
Sbjct: 410 YLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAG 467
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S D + S L K I EQ KRV + GI+ + D
Sbjct: 468 VDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRVGK-------NEGGGILPPNHD 520
Query: 324 ------SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFT 375
+ W + + VG L+ L++ A ++ G+ +++PAF H
Sbjct: 521 DMQDIWTPAWSRMIQLGVGSELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAY---- 576
Query: 376 KEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYV 433
E ++G++ GVI+ +P+V L K ++I ++PMLV P W +N+GG+ V
Sbjct: 577 -EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPV 635
Query: 434 MRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
MR + +Q++ +K + LEPVF VL S+
Sbjct: 636 MRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 670
>gi|440790817|gb|ELR12085.1| DNAdependent RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 965
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 150/372 (40%), Gaps = 76/372 (20%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI------ 194
L+ + + ET++ E+A + Y+ + + + LA L + WFEPL AI
Sbjct: 126 LENLEYEWETKSVEKAVERYKKISKSLKQLGLAFELLQGNQILGHWFEPLCAAIRAEQNA 185
Query: 195 ------AKDQATAQDKWKHMT-------YAPYFNNLPADMMAVITMHK-LVGLLMTNAGE 240
A D A + K K T + Y +P + +AVIT+H+ + +L ++ E
Sbjct: 186 ALLKTSAADAAASPTKGKKKTQKAEDRELSAYLVTIPPEKLAVITIHETMCEILKSHHPE 245
Query: 241 VRVVQA-ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE--QEK 297
A +G A+E E E+L KE + +
Sbjct: 246 GAPFAALVVAVGRAVEYEYNC----------------------------ERLAKEGWKPQ 277
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI-------- 349
L+ R + K+Q +R + + WG K+G L+Q L+ TA I
Sbjct: 278 LRNRSATPTKQQICSLIRTQSRAQFEDASWGAALHAKIGSLLVQQLLGTATIARKAEEAD 337
Query: 350 ----QPPVDQLGDSPPDIRPAFVHTLKSFTKEA-------LKGRRYGVIECDPLVRKGLE 398
Q +L P RPAFV ++ + A L+G+ G + C V +E
Sbjct: 338 VAAAQSSPARLLSGAPRKRPAFVTKEEALLEPAFNHHQAMLRGKLTGFLGCHEQVLALME 397
Query: 399 KTGRH---MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
M YMPMLV P W N+GG+ + V+R G+R Q E ++ + ++
Sbjct: 398 HEEVQRGVMQARYMPMLVEPQPWVAPNQGGYLVARTQVLRAKGSRMQTEVLR---SASMD 454
Query: 456 PVFQVSRVLYSS 467
V++ +L S+
Sbjct: 455 KVYECLNLLSST 466
>gi|321262647|ref|XP_003196042.1| RPO41p [Cryptococcus gattii WM276]
gi|54112187|gb|AAV28789.1| RPO41p [Cryptococcus gattii]
gi|317462517|gb|ADV24255.1| RPO41p [Cryptococcus gattii WM276]
Length = 1180
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 32/294 (10%)
Query: 193 AIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAAC 248
++A + +A + K Y + LP D +A+IT+ ++ + M+ +G + +V++
Sbjct: 268 SVAPPKYSATARMKPQVLLMYLSLLPVDKLALITILEI--MRMSGSGGIADGMKVLRGMV 325
Query: 249 QIGEAIENEARIQSF-----FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+G+A+E E R ++ S D + S L K I EQ KR+
Sbjct: 326 AVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQKPSRQLIGSVWKKIGEQANQAKRLG 385
Query: 304 SLIKKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVD--QL 356
K + R + H D + W + + VG L+ L++ ++
Sbjct: 386 ------KGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSELVDALLKVTKVERTARDRNT 439
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVP 414
G+ +++PAF H E ++G++ GVI+ +P+V L K ++I ++PMLV
Sbjct: 440 GEIVMELQPAFTHAY-----EYVRGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVE 494
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
P W +N+GG+ VMR + +Q++ +K + LEPVF VL S+
Sbjct: 495 PRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGHLEPVFHGLDVLSST 548
>gi|81373966|gb|ABB71761.1| mitochondrial DNA-directed RNA polymerase [Physarum polycephalum]
Length = 997
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 137/332 (41%), Gaps = 58/332 (17%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
AKY + Q +E A +QA + Y+ L + + +L + + W+ P RD+I
Sbjct: 173 AKYQL----QADLELNAIDQATEYYRKALDGILRARQGASLGPTRRIIDSWYGPFRDSIN 228
Query: 196 KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIE 255
+ + L +D + VIT+H+ +G+L+ N V +Q A +G A++
Sbjct: 229 AAVRKMSARASSHSLVANLKLLSSDKLPVITLHQTLGMLLANTEGVPFMQVAFAVGRAVQ 288
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E + K+ + L+K + + + ++ K L++
Sbjct: 289 AEVNFERMKAEDKQAFRS-----------------LLKSKSGITVTLVNIKAKYTLKK-- 329
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----------------QLGDS 359
W +V++G L++ LM +A I+ VD QL D
Sbjct: 330 ---------HDWDSKTIVQLGAFLLKHLMLSAKIEKNVDKVLSKANNLAVSSSERQLADD 380
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-----IPYMPMLVP 414
+ AFVH K F ++ RR G+++C + K ++ H+I +PM+V
Sbjct: 381 --EYVSAFVHYYK-FYRQGSTTRRQGLLKCHENIFKYVDDG--HVIKEVLDARLLPMVVK 435
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
P+ W GG+ ++PS +MR + Q ++
Sbjct: 436 PVPWVSPTVGGYLYVPSVLMRAQEHQAQYASL 467
>gi|298708570|emb|CBJ30655.1| mitochondrial DNA-directed RNA polymerase [Ectocarpus siliculosus]
Length = 1167
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 152/367 (41%), Gaps = 79/367 (21%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y L + Q+ E ++ ++A ++Y ++ ++ + ++ L W+ L+++I ++
Sbjct: 281 YSTLYQMQLDREDQSHQEACEKYGKMVKELMTMGKGTQMKPIERLLTTWYPALKESIERE 340
Query: 198 Q----ATAQDKWKHM-----------TYAPYFNNLPADMMAVITMHKLVGLLMTNAGE-V 241
Q A D K TY + L AD AV+ MH++V L++ + + V
Sbjct: 341 QEAVWANVTDDNKGTVKTSGSFGGRGTYGAFLVMLKADKQAVLVMHEVVNLILASGNKGV 400
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
V+A ++ E ++ E + K KK + +
Sbjct: 401 STVRACTRVAELVQAEVNLMRMKKDGKKGQ---------------------------RVQ 433
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA-------------- 347
V+SL +++ + ++ W A VK+G LI+LL+ETA
Sbjct: 434 VSSLRHVREVNKQAQDALDMLEDTHWPIGAQVKLGAALIKLLIETACWTYDKESGVVTAW 493
Query: 348 ------YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR--RYGVIECDP-LVRKGLE 398
D G P + AFVH + +KG+ R G + P + K ++
Sbjct: 494 DKGGAERGGGERDTEGFPMP--KAAFVHDI-------IKGKNSRKGSLTMAPEIFSKMVD 544
Query: 399 KTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
+ + P ++PMLVPPL+W NRGG L + +MRT G Q+ ++ R+ L V
Sbjct: 545 EDISRLATPRFVPMLVPPLDWIKPNRGGFLRLRAQIMRTKGEAAQKHALR---RADLRQV 601
Query: 458 FQVSRVL 464
++ L
Sbjct: 602 YKALNCL 608
>gi|255585835|ref|XP_002533595.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
gi|223526524|gb|EEF28786.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 589
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
Y++G H FLPSYVMRTHGARQQRE +K+TPR QL+PVF+ L S+
Sbjct: 30 YDKGAHLFLPSYVMRTHGARQQREAVKITPREQLQPVFEALDTLGST 76
>gi|270356866|gb|ACZ80653.1| putative DNA-dependent RNA polymerase RPO41 [Filobasidiella
depauperata]
Length = 1181
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 45/279 (16%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTK 268
Y + LP D +A+IT+ ++ + M +G + +V++ +G+A+E E F++
Sbjct: 411 YLSLLPVDKLALITILEI--MRMAGSGGIIDGMKVLRGMVAVGKAVETE------FRAET 462
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK--- 325
KN ++ T DP+ Q+ ++ ++S+ KK Q G + H+ S
Sbjct: 463 IKNVA--GIDSYHWMRTIDPQT----QKPSRQLISSVWKKIGNQA--GESQRHISSSSNS 514
Query: 326 ---------PWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPAFVHTLKSF 374
W + + VG L+ L++ A ++ G+ + +PAF H
Sbjct: 515 EDMKDLWTPAWSRMIQLGVGSELVDALLKVAKVKREATNAVTGEKVVEEQPAFTHAY--- 571
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGG---HFFL 429
E ++G+ GVI+ +P+V + L ++I ++PMLVPPL WR ++ GG H L
Sbjct: 572 --EYVRGKCLGVIKLNPVVAERLANDDIGVVIHPKHLPMLVPPLPWRAHDNGGYLMHSGL 629
Query: 430 PSYVMRTHGARQQRETIKMTPRS-QLEPVFQVSRVLYSS 467
VMR + +Q++ +K + LEPVF VL S+
Sbjct: 630 TVPVMRYKESLEQQKWLKAAAEAGHLEPVFHGLDVLSST 668
>gi|358055118|dbj|GAA98887.1| hypothetical protein E5Q_05575 [Mixia osmundae IAM 14324]
Length = 1375
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 136/344 (39%), Gaps = 45/344 (13%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADM---CEQKLAPNLPYVKSLFLGWFEPL------- 190
L RQ ++E A + A ++Q M Q+++ ++SL GW E L
Sbjct: 396 LYERQRQLEDSAMQAAVVQFQTEREKMNTEVAQRVSMQQRSLQSLMTGWIEELTVVLTRV 455
Query: 191 ----RDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
R I D T ++ YF LP D +A +T+ L+
Sbjct: 456 QEQMRLLIDSDAVTTKETVIEGCKIFATDRAADDIYFLLLPPDKLAYLTVSVLLSHNTPG 515
Query: 238 AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK 297
A +V + IG+A+E E +S + + A D ++E E
Sbjct: 516 AAMQKVTRCVMAIGKAVEVEHYAMKLQESHRLELA--------------DALHAVREAEA 561
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
S + + + VR W ++G + L ETA IQ G
Sbjct: 562 ANGVTESRVVARIWRDVRARQGDSSREVFWSHQTRARIGAMCLHFLCETAKIQRSAVIDG 621
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIP-YMPMLVPP 415
+I+PAFV T + F+ G++ G+I+ + V + L+K + P Y+PMLVPP
Sbjct: 622 QEIIEIQPAFVQTYQ-FSA----GQKIGIIKFNAAVTERLDKDSMLSTLTPRYLPMLVPP 676
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVF 458
W +N+G + P V+R + +Q +K S QL+ F
Sbjct: 677 RPWTAHNKGAYLMHPVSVLRIKDSMEQTAYLKQASDSGQLDEAF 720
>gi|170097643|ref|XP_001880041.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645444|gb|EDR09692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 960
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 48/360 (13%)
Query: 144 RQIKIETEAWEQAAK------EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD----- 192
RQ +ET +E A + EY + L E +L + ++S W + L+
Sbjct: 1 RQKHLETSVYEIARERMKEEHEYLESLGINAENRLKDST--LQSWMWQWHQNLKSRLESE 58
Query: 193 --AIAKDQATAQDKWKHMT--YAPYFNNLPADMMAVITMHKLV---GLLMTNAGEVRVVQ 245
IA +A ++ T +PY + AD ++ IT+ +L+ G N G ++ +
Sbjct: 59 IKLIAAFEAKMLNRHDQTTQLLSPYLALVKADRLSYITILELMRLQGSGGVNHG-MKTTR 117
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A IG+A+E E + Q + + + G S TN L S
Sbjct: 118 ALIAIGKAVEMEYKAQM----CRTNDIAIPTMTGHS---TNFFSVL----------GYSN 160
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDI 363
++K+++ R + G + PW Q K+G L++ LM+ AY++ D G S +
Sbjct: 161 LQKRRMAAARHMQDGEAWTTPWSQAVRSKIGGILVECLMDVAYVRRQRDDQVTGKSVTED 220
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGY 421
+PAF H E ++G + G+++ +P V + L R I P ++PMLVPP W
Sbjct: 221 QPAFYHAY-----EYVRGTKLGILKLNPAVAERLSTDRLRETIHPRHLPMLVPPKPWMHI 275
Query: 422 NRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLII 480
+GG+ + + VMR + +Q + K ++E V VL S+ + N+Y +++
Sbjct: 276 RQGGYLYNKTSVMRFKESIEQETYLQKAIDDGKMELVLAGLDVLGSTPWRINKNVYEVVL 335
>gi|213406824|ref|XP_002174183.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
gi|212002230|gb|EEB07890.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
Length = 1169
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 137/318 (43%), Gaps = 41/318 (12%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKDQAT 200
RQ +E +A E + E++ ++ + N P+ +SL W+E L I ++
Sbjct: 294 RQRLMEKKALESSIAEWRHSYNEILRR--GENPPHSRSLNALLYVWYEKLEALIQEEFRQ 351
Query: 201 AQDK-------WKHMT---YAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAAC 248
+D +K T YA Y L +A IT+ +++ + VR A
Sbjct: 352 IEDSENNKASPYKSRTRAEYAQYLKLLSPSKLAAITVLEMLTFVTNKRYCTGVRSTFALM 411
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+G A E E +F +K + NL P + D +KL + S +KK
Sbjct: 412 SVGRAFEKE-----YFSEQLQKIEAEGNL-----PKSVDSKKLFSS----PRLFNSFVKK 457
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
+ + GIV+ + +PW + LVKV + LL+ +A I+ D D P+ +
Sbjct: 458 IRDNEDNGIVQSSL-YQPWSPNILVKVASVTVSLLINSAKIR---DSALD--PETKSTVF 511
Query: 369 HTLKSFTK--EALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRG 424
+F L GR+ GVI P++ L E +G H+ +PMLV P W +N G
Sbjct: 512 QDSSAFQHGYRYLAGRKVGVIVAHPVLYDILASELSGAHLPPYRLPMLVKPRPWLMWNSG 571
Query: 425 GHFFLPSYVMRTHGARQQ 442
G+++ V+R + +Q
Sbjct: 572 GYYYSSESVLRFKESHEQ 589
>gi|302676686|ref|XP_003028026.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
gi|300101714|gb|EFI93123.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
Length = 1086
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 28/274 (10%)
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEA 258
A K++ +PY + A+ ++++T+ +L+ L T ++ +A +G+A+E E
Sbjct: 157 AHLKYQAEMISPYLALVNAERLSLLTIMELMTLHDTGGVTDGMKTARAVIAVGKAVEAEY 216
Query: 259 RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIV 318
+ Q + N++ S ++D S ++++++ R +
Sbjct: 217 KAQMCKR---------NHIAVPSSTRSSD-------VSVFSNLGYSNLQERRVAAARLME 260
Query: 319 KGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQ-LGDSPPDIRPAFVHTLKSFTK 376
G + PW +VG LI LM+TA +Q VD+ G + +PAF H+
Sbjct: 261 DGEAWTAPWSVHTRARVGGVLIDCLMDTAKVQRTAVDKNDGKILTEEQPAFYHSY----- 315
Query: 377 EALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G+R GVI+ + V + E T + ++PMLV P W YN GG+ + +Y M
Sbjct: 316 EYVQGQRLGVIKLNQEVAAHMANEWTIDTVHPRHLPMLVKPKPWLNYNDGGYLYHKTYAM 375
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
R G+R+Q+ +K + Q E V+ VL S+
Sbjct: 376 RFKGSREQQAYLKHASDAGQCELVYAGLDVLGST 409
>gi|255730283|ref|XP_002550066.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
gi|240132023|gb|EER31581.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
Length = 1293
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 164/403 (40%), Gaps = 67/403 (16%)
Query: 90 ASESELSGSEEVQELIDQFNEKGV---------SILDSSSMLDKQPKKKGTGMGTAKYYM 140
++ES + S +V+E+ID +++ V + + S L ++ +
Sbjct: 317 STESVVQFSRQVKEIIDGLDDEQVKEDIKAGKFNHFEVYSKLQTDEQRSAFSEALETFNY 376
Query: 141 LKRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKSLFLGWF 187
+++QI+I E W+ +E Q DL L C + + +P ++
Sbjct: 377 ERQKQIEIRGIEGAKEKWKHDFEEQQKRGDLNLTKGLNAQCYEWVQEMVPIIQKELEACK 436
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQ 245
E L D D+A+ K + YAP+F + + AVIT+ +L+ L T R +
Sbjct: 437 ELLNDG---DKAS-DAKSERALYAPFFIKVDPEKAAVITILELLKLHSTGGVVNGFRAYK 492
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A +G+AIE E R+ + K +++ NN +LK +
Sbjct: 493 AVVGVGKAIEGEFRMNLQVQQENKLSSSKNN------------------SPRLKNLIRET 534
Query: 306 IKKQKLQQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR 364
IKK + D P W +VG L+ LM + ++ D+
Sbjct: 535 IKKDE------------DEIPEWDNVTRSRVGGVLVSALMTVSKVRVVKKTPEGVIKDLH 582
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYN 422
PAF H + + + G+R GVI+ + K L T + P Y+PML+ P W ++
Sbjct: 583 PAFYHGV-----QFIGGQRVGVIKVHAEISKLLTGTSFAESVQPQYLPMLIRPKPWTSFH 637
Query: 423 RGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
GG F S ++R A + +K + R L+ VF VL
Sbjct: 638 GGGSLFSKSPLVRMKDAPETEAYVKAASKRGNLDQVFDGLNVL 680
>gi|323456523|gb|EGB12390.1| hypothetical protein AURANDRAFT_20280 [Aureococcus anophagefferens]
Length = 902
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 51/308 (16%)
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKH---MTYAP 212
A +Y+ ++ D+ L V+ L W+EPL I ++ D K Y P
Sbjct: 88 ACADYEAMIEDLLSLGKGAELKPVQRLMAQWYEPLVTRITAERKATLDGDKGGDLRIYGP 147
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAG-EVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
LP + +AV+TMH +GL + + + +GE ++ EAR+ +++
Sbjct: 148 LLLLLPPEQLAVLTMHTTIGLCLKHGPLGAKYSNLVTTLGETVQAEARVLKLRNLRRERL 207
Query: 272 ATDNNLEG---------DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHV 322
+ EG D+ L P ++ + K R + +G
Sbjct: 208 KAAEDAEGKRAVPKTFLDARALARLPTHVVNSRAK-----------------RALEEG-- 248
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D W K+G L+ L++ A D G P HT+ R
Sbjct: 249 DDTDWPTITRAKLGSALVMALLDVAK-----DDAGS------PLLEHTIVYSN-----AR 292
Query: 383 RYGVIEC-DPLVRKG-LEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ G+I D L+ +T R +P ++PMLV P WR Y+ GG L + MRTHG
Sbjct: 293 KIGIIRAKDELLSHARCPETIRRAAMPRFLPMLVEPRRWRAYDEGGFLRLRAVAMRTHGC 352
Query: 440 RQQRETIK 447
Q E +
Sbjct: 353 ALQMEAFR 360
>gi|308808155|ref|XP_003081388.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
gi|116059850|emb|CAL55557.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
Length = 973
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 51/327 (15%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
R+Q + E A E+ Y++ + LP V+ L ++ PL DAI ++ +
Sbjct: 79 RKQREAENLACEREVARYKEFARKTFAAGIGAQLPVVQKLLASFYVPLVDAIKEEHEKIK 138
Query: 203 DKWKHM---TYAPYFNNLPADMMAVITMHKLVGLLMTN-----------------AGEVR 242
+ Y Y L + +AV+T+H + LM +G +
Sbjct: 139 SNVPGVDRRVYGHYLALLEPEKLAVLTLHTTLSTLMKGDLRLDVPIFRGDDDTAASGSAK 198
Query: 243 VVQAACQIGEAIENEARI------QSFFKSTKKKNATDNNLEGDS-EPLTNDPEKLIKEQ 295
+ A Q+G ++ E + + K KK+ L D + D E+L+++
Sbjct: 199 FITVAEQVGIVVQAEVNLGRMRAAEKIAKEAYKKSRQQTTLTADGGNAASKDVEELVEQ- 257
Query: 296 EKLKKRVTSLIKKQKLQQVRGIVK---GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
R+ + K+ ++ + K +++ WG++ VKVG L+ LM TA I P
Sbjct: 258 -----RINLTLDTSKMNTIKSVSKHARNALENAEWGREIRVKVGTVLLNALMNTAKIGVP 312
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIP--Y 408
+ G V TL +F + +G YG++ + + + E R ++P +
Sbjct: 313 EENGG----------VLTLPAFYHDYREGG-YGMLHWHDSIYRFINTETMTRAALVPVKH 361
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMR 435
PM+VPP W YN GG+ + MR
Sbjct: 362 FPMIVPPREWVRYNNGGYLRANTLCMR 388
>gi|212530466|ref|XP_002145390.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
gi|210074788|gb|EEA28875.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
Length = 1378
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 137/315 (43%), Gaps = 43/315 (13%)
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKL--APNLPYVKSLFLGWFEPLRDAIAKD-- 197
++RQ ++E +A + A K +Q + M + + + SL W+ L + ++
Sbjct: 340 RKRQAELEGKAVDTAKKRWQREMETMRSAGIDTSGGGKTIASLLEQWYNDLVIKVKEEIN 399
Query: 198 ---------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQA 246
+ + DK + YA + LP D +A IT+ ++ L E ++V
Sbjct: 400 TFGSSEKSSKLSPDDKTRE--YADFLRLLPPDTLAAITVMHIIQLFARAGVEKGLKVPTI 457
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
+G+ ++NE QS +++ + +K IK+ + +K+ I
Sbjct: 458 MTSLGQEVQNEFIAQSMIAKSERDSRH---------------QKFIKQVVENRKKKAGRI 502
Query: 307 KKQKLQQVRGIVKGHVDSK-PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI-- 363
K +KL +DS+ W D KVG L+ LL + A P V + ++ I
Sbjct: 503 KFKKLLTEMKCDSRQIDSELNWPIDVHAKVGGALLSLLFDCAKT-PVVQEDPETKKRITI 561
Query: 364 -RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGY 421
PAF H+ E +GR++G++ P V + L + + + +MPML P W G+
Sbjct: 562 MEPAFQHSY-----EINRGRKFGLLHAHPEVTRRLIREAPNAVHARHMPMLSEPQPWTGF 616
Query: 422 NRGGHFFLPSYVMRT 436
++GG S ++RT
Sbjct: 617 DKGGFLAQRSSIIRT 631
>gi|294656558|ref|XP_002770286.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
gi|199431562|emb|CAR65641.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
Length = 1312
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 142/352 (40%), Gaps = 51/352 (14%)
Query: 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQA 199
M KR I + Q K Y DLL + E+ + L +P + KD+A
Sbjct: 400 MQKRGAINLHKSLNVQLFKWYSDLLPYVEEEVNQCKKILDGEISLDNVKPDAKNLMKDRA 459
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENE 257
YAPY +P M VIT+ +L+ L T +R +A +G+A+E E
Sbjct: 460 Y---------YAPYLTLIPPKKMCVITILELLKLNSTGGIVDGMRTARAVISVGKALELE 510
Query: 258 ARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI 317
+ Q+ K+ EG S KK T+ K+ L+Q R
Sbjct: 511 YKSQNLMKA-----------EGRSLS---------------KKLKTTSQWKKLLRQRRDY 544
Query: 318 VKGH-VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLK 372
K + + W KVG L LL+ A + PV G ++PAF HT
Sbjct: 545 NKQDPIANNEWDYPIYAKVGSVLTSLLIHVAKV--PVKGTDPTTGKEVKGMQPAFHHTY- 601
Query: 373 SFTKEALKGRRYGVIECD-PLVRKGLEKTGRHMIIPYM-PMLVPPLNWRGYNRGGHFFLP 430
+ L+G+R GV++ LVR+ + + P M PMLVPP W YN GG+ F
Sbjct: 602 ----QYLQGQRLGVLKVHKSLVRQLAGNVLGNSVQPQMLPMLVPPRPWTSYNDGGYLFSQ 657
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLIINF 482
+ ++R + + +K ++ VL + + N++ +I F
Sbjct: 658 NSLVRIKDSAETNAYLKAASDLDNLEIYDGLNVLGDTAWTVNRNVFNIISKF 709
>gi|150865988|ref|XP_001385433.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
gi|149387244|gb|ABN67404.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
Length = 1251
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 44/236 (18%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P + M VIT+ +L+ L T +R +A +G+A+E E + QS KS
Sbjct: 405 YAPYMVLVPPEKMCVITILELLKLNSTGGIVDGMRAARALISVGKAVELEYKSQSLLKSE 464
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K + K +K + K+ +++ + I++ DS W
Sbjct: 465 IKAFS-----------------KKVKSTNQWKRILSN--------KKNNIIENPDDSTDW 499
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVDQ----LGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L LL+ A + PV G + +PAF HT + L G++
Sbjct: 500 SYTVYAKLGAVLTNLLLFVAKV--PVKAHNPTTGKTITGSQPAFFHTY-----QFLNGQK 552
Query: 384 YGVIECDPLVRKGLEKTGRHM---IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
GVI+ + K L GR + + P +PMLV P W YN GG+ + S ++R
Sbjct: 553 LGVIKLHKEIIKQL--AGRSLSNAVQPQLLPMLVAPREWHSYNDGGYLYSRSTLVR 606
>gi|363748672|ref|XP_003644554.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888186|gb|AET37737.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1298
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 46/279 (16%)
Query: 198 QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIE 255
Q + +DK + M YAPY L + M+VIT+ +L+ L T +R +A IG+A+E
Sbjct: 439 QHSPKDKAR-MEYAPYLTLLNPEKMSVITILELLSLNSTGGVSEGMRTARAVMAIGKAVE 497
Query: 256 NEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR 315
E R ++ KS + + D K E +KL + + + K++Q +
Sbjct: 498 MEFRSEALLKSENQ--------------MFKDVSKKSPEFKKLLQMAKTTFRNTKIEQSK 543
Query: 316 GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIRPAFV 368
W K+G LI +L+ A ++ PV + G++P A
Sbjct: 544 VF---------WPYQIRAKIGSLLISMLINVARVEVTGIDPVTKEAVYGEAP-----AIC 589
Query: 369 HTLKSFTKEALKGRRYGVIECDPLV--RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGH 426
HT + T G + GV++ + + G E+ + ++PMLV P W +N GG+
Sbjct: 590 HTFQYRT-----GSKIGVLKLHRSLTYQLGGERLNASVQPQHLPMLVKPRPWTSWNSGGY 644
Query: 427 FFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
++ S ++R+ + +Q IK +T + + ++Q VL
Sbjct: 645 YYSQSTLIRSKDSPEQLAYIKAVTGKGAVNNIYQGLNVL 683
>gi|149244242|ref|XP_001526664.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449058|gb|EDK43314.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1307
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 160/401 (39%), Gaps = 68/401 (16%)
Query: 98 SEEVQELIDQFNEKGVSILDSSSM--------LDKQPKKKGTGMGTAKYYMLKRRQIKIE 149
++EV+++++ +E S ++S + L+ +KK ++ ++RQI E
Sbjct: 332 AKEVEKIVEDLDEDVKSEINSGKLDYYEIYNKLETAEQKKQFNRALDEFNHDRQRQI--E 389
Query: 150 TEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPL-----------RDAIA 195
E A ++++ D E +L K L WF+ L RD I
Sbjct: 390 VRGMEGAREKWKH---DFEEATKRGDLNMSKGLNAKCYEWFQELMPLIKREQDLCRDLIN 446
Query: 196 KD----QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
D Q + +D + YAPY +PA+ AVIT+ ++ N +R+ Q
Sbjct: 447 GDKSAKQGSTEDARERALYAPYLIQVPAERAAVITILDVLRQHAANTSNKGMRISQTMAG 506
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G++ E E+++ K K A+ K +L++ + ++K
Sbjct: 507 VGKSFEAESKVSKLAKKDAKLFAS----------------KKFAGSTQLQRVIRKSLEK- 549
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
Q +G+V W K+G L+ LM +A ++ D G I PAF H
Sbjct: 550 --QDDKGLV--------WDPLIRSKIGGVLLSFLMSSAKVKVTRDVDGKKESAIHPAFFH 599
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGYNRGGHF 427
++ + G + G+ VRK L I+P MPMLV P W Y GG
Sbjct: 600 SVTVNS-----GSKSGMFNIHSEVRKVLSGNQFSDTIMPQSMPMLVEPKPWSSYYGGGSL 654
Query: 428 FLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQVSRVLYSS 467
+ ++R + + +K R L VF VL S+
Sbjct: 655 YSEESLIRLKESPETSAYVKAAAKRGNLTEVFDGLNVLGST 695
>gi|224171355|ref|XP_002339484.1| predicted protein [Populus trichocarpa]
gi|222875221|gb|EEF12352.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 61 NLGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSILD 117
N G +N + G R Y S AEA++S E +SG++EVQEL + ++
Sbjct: 11 NSGSTNGNRC----GGFCPRGYVSVAEALSSTDVEDNVSGADEVQELQPEMRKE------ 60
Query: 118 SSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADM 167
++ + G+G+ K+ +L+RRQ+KIE EAWE A KEY++LL DM
Sbjct: 61 -EEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM 109
>gi|367000748|ref|XP_003685109.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
gi|357523407|emb|CCE62675.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
Length = 1322
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 133/309 (43%), Gaps = 57/309 (18%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPYVK E + K + Q++ + M YAPYF + + M VIT+ +L+ L
Sbjct: 438 LPYVKQEIEKCKEVMNSTEKKSTVSRQNRLR-MEYAPYFTLVDPEKMCVITILELLKLNS 496
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + K+ +S K IK
Sbjct: 497 TGGIIEGMRTARAVIAVGKAIEMEFRSEQLLKN-------------ESHIF-----KEIK 538
Query: 294 EQEKLKKRVTSL---IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ 350
+ + LK+ V S + K++Q + I W Q A K+G +I L+ A I+
Sbjct: 539 QSQNLKRFVRSAKSRFRSIKIEQSKII---------WSQPARAKIGSIMISNLINVAKIE 589
Query: 351 PPVDQLGDSPPDIR-------PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH 403
+G P + PAF H+ + G + GV++ + L G
Sbjct: 590 -----VGGMDPVTKEKVYGEVPAFSHSYQYHN-----GLKLGVLKIHKSLVHQL--NGER 637
Query: 404 MIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVF 458
M+ +PMLV P W+ + GG+++ S ++R+ + +Q +K ++ ++ V+
Sbjct: 638 MVAAVQPQLLPMLVAPREWKNWKCGGYYYTQSTLIRSKDSPEQVAYLKAVSDAGAIDRVY 697
Query: 459 QVSRVLYSS 467
VL S+
Sbjct: 698 HGLNVLGST 706
>gi|409043331|gb|EKM52814.1| hypothetical protein PHACADRAFT_261459 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1324
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 9/142 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W Q V+VG L+ LM+ A + + +D+ G+ + +PAF H+ E L+G++ G
Sbjct: 552 WTQTIRVRVGSFLVDALMDVATVSRTAIDKHGELHTEEQPAFYHSY-----EYLRGQKLG 606
Query: 386 VIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQR 443
VI+ +P+V L K R + P ++PMLV P W +++GG+ + + VMR +R+Q+
Sbjct: 607 VIKLNPVVADRLAKDQVRETLHPRHLPMLVRPKPWLSHDQGGYLYNKTSVMRYKDSREQQ 666
Query: 444 ETIK-MTPRSQLEPVFQVSRVL 464
++ + + LE V+ VL
Sbjct: 667 SYVREASSQGALELVYASLDVL 688
>gi|392563654|gb|EIW56833.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1130
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 122/264 (46%), Gaps = 26/264 (9%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+P+ L + +++IT+ +L+ L + + ++ +A +G A+E E + + K+
Sbjct: 255 SPFLKLLKPEKLSLITVLELMHLHGSGGVQDGMKTARALLAVGRAVEGEHKAEMCKKNNI 314
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
+ GD TN + ++ +RVT+ + ++ + W
Sbjct: 315 SVPNANPARSGDQNVFTN-----LGYRDLHARRVTARKYMEDSEEW---------TSDWS 360
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGV 386
Q VK+G L+ LM+ A +Q + + G+ + +PAF H+ E +G + GV
Sbjct: 361 QLVRVKIGSFLVDCLMDVATVQRSIKDPRTGEKLTEEQPAFFHSY-----EYQRGHKLGV 415
Query: 387 IECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
I+ +P V + + K + ++PMLV P W YN GG+ + ++ MR +R+Q
Sbjct: 416 IKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGYLYSRTWAMRFKESREQEL 475
Query: 445 TIK-MTPRSQLEPVFQVSRVLYSS 467
++ + +LE VF VL S+
Sbjct: 476 YLRHASDAGRLELVFAGLDVLSST 499
>gi|190348218|gb|EDK40635.2| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 51/269 (18%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P MAVIT+ +L+ L T +R +A +G+A+E E + Q+ ++
Sbjct: 451 YAPYMILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA- 509
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
E+ L K++ + + +K+ + R K + P
Sbjct: 510 --------------------------ERRSLSKKLKTTNQWKKILRTR---KDYSKENPN 540
Query: 327 ----WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
W KVG L LLM A + PV G ++PAF HT +
Sbjct: 541 ATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGTDPV--TGKQVKTMQPAFHHTY-----QF 593
Query: 379 LKGRRYGVIECD-PLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
L+G+R GV++ L+R+ + + P +PMLVPP W YN GG+ F + ++R
Sbjct: 594 LQGQRLGVLKVHKSLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRI 653
Query: 437 HGARQQRETIK-MTPRSQLEPVFQVSRVL 464
+ + +K + L+ V++ VL
Sbjct: 654 KDSAETNAYLKAASDMGNLDQVYEGLNVL 682
>gi|342319535|gb|EGU11483.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1343
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 156/359 (43%), Gaps = 28/359 (7%)
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYM-LKRRQIKIETEAWEQAA 157
E V E+ +KG ++ S ML +G + T + + L RQ +E +++ A
Sbjct: 318 ENVAEVAPVQGDKGENV--SLGMLKHN--LRGLAVNTGRDGLPLSARQRLLEESSYDAAR 373
Query: 158 KEY---QDLLADMCEQKLAPNLPYVKSLFLGW----FEPLRDAIAKDQATAQDKWKHMTY 210
+ Y ++ LA + + + +++ + W + L D A + ++
Sbjct: 374 QLYIHSREQLAQIGKDEGGLQSNWIQQIMFDWHKKLVKTLEDIAAGKRKDIDSGFRDREL 433
Query: 211 APYFNNLPADMMAVITM---HKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKST 267
P+ LP D +A+IT+ ++ G A ++ + +G A+ENE ++ S
Sbjct: 434 EPFLQLLPVDKLALITIVEVMRMCGSGTFAADGMKTTRVVLNVGRAVENEHHAEALRDSL 493
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K + + +S N P+ + + + + ++ ++ G H + W
Sbjct: 494 STKKLQEELAKVESRGTIN-PDGTVTPRRQTESLGILWRRELAKREEDGDSTWHPN---W 549
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
Q +VG L+ LME A ++ + + G+ + +PAF H + ++G + G
Sbjct: 550 TQTIRARVGSVLVSALMEIAEVERTIKHPKTGEQVSEKQPAFSHAY-----QYMRGTKLG 604
Query: 386 VIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
+I+ +P V + L+K + + ++PMLV P W +N G + + +MRT + +Q
Sbjct: 605 IIKLNPAVSERLDKDPLDITLHPRFLPMLVKPKPWLTWNSGAYLLHQTPMMRTKESEEQ 663
>gi|146413615|ref|XP_001482778.1| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 51/269 (18%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P MAVIT+ +L+ L T +R +A +G+A+E E + Q+ ++
Sbjct: 451 YAPYMILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA- 509
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
E+ L K++ + + +K+ + R K + P
Sbjct: 510 --------------------------ERRSLSKKLKTTNQWKKILRTR---KDYSKENPN 540
Query: 327 ----WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEA 378
W KVG L LLM A + PV G ++PAF HT +
Sbjct: 541 ATNEWDYPIYAKVGSVLTSLLMHVAKVSVKGTDPV--TGKQVKTMQPAFHHTY-----QF 593
Query: 379 LKGRRYGVIECD-PLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
L+G+R GV++ L+R+ + + P +PMLVPP W YN GG+ F + ++R
Sbjct: 594 LQGQRLGVLKVHKSLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRI 653
Query: 437 HGARQQRETIK-MTPRSQLEPVFQVSRVL 464
+ + +K + L+ V++ VL
Sbjct: 654 KDSAETNAYLKAASDMGNLDQVYEGLNVL 682
>gi|409082678|gb|EKM83036.1| hypothetical protein AGABI1DRAFT_69188 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 967
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 30/263 (11%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + + + +++IT+ +++ L ++ A ++ +A +G+A+E E + Q K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKAQMI---KK 146
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
N D+ G + L + K V ++G S W
Sbjct: 147 PDNVADSKSAGGN----------------LYSHAAYKNLRDKRLAVSKEIEGEERSLGWS 190
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
Q K+G L+ LME A ++ + G+ +++PAF H E L+G R GVI
Sbjct: 191 QVTRSKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSRLGVI 245
Query: 388 ECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
+P+V + L + + P ++PMLV P W +N GG+ + + VMR + +Q+
Sbjct: 246 RLNPVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIY 305
Query: 446 IK-MTPRSQLEPVFQVSRVLYSS 467
+K + Q+E V+ VL S+
Sbjct: 306 LKEASKHGQMELVYAGLDVLAST 328
>gi|448517808|ref|XP_003867858.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis Co
90-125]
gi|380352197|emb|CCG22421.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis]
Length = 1291
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 50/278 (17%)
Query: 197 DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM--TNAGEVRVVQAACQIGEAI 254
D T +D+ YAP+ + A+ AVIT+ +L+ L +N G +R V+A +G AI
Sbjct: 439 DTTTTKDR---AFYAPFLTKVGAEKAAVITILELLKLNASGSNNGGMRAVKAITSVGRAI 495
Query: 255 ENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
E E R S + K + + G S Q+
Sbjct: 496 EMEYRT-SNLADQEYKMSVSRKVAGSS-------------------------------QM 523
Query: 315 RGIVKGHVDSK-----PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH 369
+ IV+ +DS+ W +VG L+ LM A ++ + D PAF H
Sbjct: 524 KKIVRNSIDSQEEADPEWDHATRSRVGGVLVSFLMAIAKVKVRRQTPKGTIEDYHPAFFH 583
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGYNRGGHF 427
++ + + G+R+GVI+ + K L T I P +PMLV P W + G
Sbjct: 584 SM-----QFVGGQRFGVIKIHNEISKNLSGTSFMETIQPQSLPMLVKPKPWDSFYGGIGL 638
Query: 428 FLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQVSRVL 464
+ + ++R A + +K R L+ VF VL
Sbjct: 639 YSKNALVRMKDAPETEAYVKAAAKRGNLQEVFDGLNVL 676
>gi|357502599|ref|XP_003621588.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355496603|gb|AES77806.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 895
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+++GG+ FLPSYVMRTHG +QQRE +K PR QLEPVF+
Sbjct: 334 FDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEA 373
>gi|448089097|ref|XP_004196715.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|448093284|ref|XP_004197746.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359378137|emb|CCE84396.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359379168|emb|CCE83365.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
Length = 1317
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 49/270 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFF- 264
+ YAPY +P M VIT+ +L+ L T +R +A +G A+E E + Q
Sbjct: 463 LYYAPYLILVPPKKMCVITILELLKLNSTGGIIDGMRTARAVISVGRALELEYKSQRLMQ 522
Query: 265 ---KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+S KK T TN ++ +++++ K +
Sbjct: 523 AEGRSLSKKLKT-----------TNQWKRFLRQRKDYNK------------------EDP 553
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKE 377
+ + W KVG L LL+ A + PV G + ++PAF HT + F
Sbjct: 554 IANNEWDYPIYAKVGSVLASLLIHVAKV--PVKGTDPTTGKTVRGMQPAFHHTYQFF--- 608
Query: 378 ALKGRRYGVIECD-PLVRK-GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
+G++ GV++ LVR+ + G + +PMLVPP WR YN GG+ F + ++R
Sbjct: 609 --QGQKLGVLKVHKSLVRQLAGNELGNSVQPQLLPMLVPPRPWRSYNDGGYLFSQNNIVR 666
Query: 436 THGARQQRETIK-MTPRSQLEPVFQVSRVL 464
+ + ++ + + L+P++ VL
Sbjct: 667 IKDSAETTAYLRAASDMNNLDPIYDGLNVL 696
>gi|426200546|gb|EKV50470.1| hypothetical protein AGABI2DRAFT_200200 [Agaricus bisporus var.
bisporus H97]
Length = 967
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 30/263 (11%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + + + +++IT+ +++ L ++ A ++ +A +G+A+E E + Q K
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEYKAQMI---KK 146
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
N D+ G + L + K V ++G S W
Sbjct: 147 LDNVADSKSAGGN----------------LYSHAAYKNLRDKRLAVSKEIEGEERSLGWS 190
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
Q K+G L+ LME A ++ + G+ +++PAF H E L+G R GVI
Sbjct: 191 QVTRSKIGGILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAY-----EYLRGSRLGVI 245
Query: 388 ECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
+P+V + L + + P ++PMLV P W +N GG+ + + VMR + +Q+
Sbjct: 246 RLNPVVSERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIY 305
Query: 446 IK-MTPRSQLEPVFQVSRVLYSS 467
+K + Q+E V+ VL S+
Sbjct: 306 LKEASKHGQMELVYAGLDVLAST 328
>gi|219127811|ref|XP_002184121.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404352|gb|EEC44299.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1188
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 153/373 (41%), Gaps = 80/373 (21%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+ Q+ +E EA +++ YQ ++ +K +L V+ L W++PL+ I Q
Sbjct: 260 LEELQLWLECEAQQESITRYQHVIDSARTRKDYASLSLVQRHVLQWYQPLKHEIESLQKA 319
Query: 201 ----AQD-------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG-----EVRVV 244
QD K Y P+ +LP + +AVI H+ + ++N G
Sbjct: 320 YIFKEQDPEGVVLTKRAANVYGPFICSLPPEKLAVICAHEAIMSGLSNPGVDGRDGTAFT 379
Query: 245 QAACQIGEAIENEARIQSF----FKSTKKKNAT----------DNNLEGDSE-------- 282
A +IG+A+E E IQ FK ++ +++T + +EGD E
Sbjct: 380 AVARRIGDAVEQEVVIQRMLHRRFKESQARHSTQDPNRILPKPEEEVEGDVELSTDKIDE 439
Query: 283 ----------------------------PLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQV 314
L N +++ + +KKR L+ + +++
Sbjct: 440 DMNDGNATTRSKSSTGTEDVHKWAYAASHLKNYLDEISYRKPSVKKR---LVIEYAIRRA 496
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
R I++ + + W + +++G L Q+L+ A ++ +D + ++ K
Sbjct: 497 RTILE---NDEAWTESQKIQLGAVLFQVLLNKANVR--IDGKQEKAFTYEKFWISKQKVQ 551
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
+ ++ R + ++ D L G T + PM+VPP W + GG+ L + ++
Sbjct: 552 SIVSMNDRLHKMLVSDKLQSFGTTTTRQK------PMIVPPKPWSRPDEGGYKMLRTELL 605
Query: 435 RTHGARQQRETIK 447
R HG Q+E ++
Sbjct: 606 RYHGCNMQKEVLQ 618
>gi|392575571|gb|EIW68704.1| hypothetical protein TREMEDRAFT_69156 [Tremella mesenterica DSM
1558]
Length = 1229
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 22/263 (8%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTK 268
Y LP + +A+IT+ ++ + M+ +G + + ++ +G+A+E E R ++ K
Sbjct: 293 YLTVLPPEKLALITILEV--MRMSGSGGIVDGMKALRGIMAVGKAVETEYRAETI----K 346
Query: 269 KKNATDNNLEGDS-EPLTNDPEK-LIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
D+ L + +P T P + LI + + K Q ++ V +
Sbjct: 347 SVGGVDSPLWLKTIDPQTQKPSRQLISQVWNQVGQSRHRPNKSTSQDLKDTGLEAVWTPA 406
Query: 327 WGQDALVKVGCRLIQLLMETA-YIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W +G L+ L+ TA ++ D G+ + +PAF H E L G++
Sbjct: 407 WSPLVHASLGGFLVDALLSTAKVVREATDPDTGEKIVEEQPAFAHEY-----EYLYGKKL 461
Query: 385 GVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQ 441
GVI+ +P+V L + H++I ++PMLVPP W + GG+ VMR A Q
Sbjct: 462 GVIKLNPVVAARLARDSLHVVIHPRHLPMLVPPKPWTSQDDGGYLVHRVPVMRYKESAEQ 521
Query: 442 QRETIKMTPRSQLEPVFQVSRVL 464
Q K LEPVF VL
Sbjct: 522 QIYLRKAFEAGHLEPVFHGLDVL 544
>gi|389743216|gb|EIM84401.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 1355
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ---PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
W Q +KVG L+ LME A ++ P G+ + +PAF H+ E ++G +
Sbjct: 494 WTQPVRIKVGSFLVDRLMECAMVERTAPDPKNPGNILREEQPAFFHSY-----EYIRGNK 548
Query: 384 YGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
GV++ + +V++ L + G R + P ++PMLV P W YN GG+ + S VMR +++
Sbjct: 549 LGVLKLNQVVQEKLGRDGVRETLHPRHLPMLVKPKPWLNYNDGGYIYNKSLVMRFKESKE 608
Query: 442 QRETIK 447
Q +K
Sbjct: 609 QETYLK 614
>gi|384499375|gb|EIE89866.1| hypothetical protein RO3G_14577 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 37/320 (11%)
Query: 173 APNLPYVKSLFLGWFEPLR----DAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
A +L +K + W + L + I + + A + Y P+ LP D ++++T+
Sbjct: 301 AMHLTPLKRIMWTWHQNLTLLIDEEIKRCEVAAPRDHERRAYGPFLKVLPKDTLSIVTIL 360
Query: 229 KLVGLLMTNA-GE-VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+L+ L ++ G+ ++ +A +G+A+E E K K + N L
Sbjct: 361 ELLRLHNSSGIGDGMKTARAILDVGKAVEMEHNAVQMKKHAKSQQNIQNVLSSG------ 414
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLME 345
R+ ++ + +++ + + P W KVG L LL+E
Sbjct: 415 --------------RLFNMAVNKAHKKIVNNDENSAEWNPVWPTTTRAKVGSVLTSLLLE 460
Query: 346 TAYIQPPV--DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIE-CDPLVRKGLEKTGR 402
A I P + G + PAF HT + + G+R G+I+ D L + R
Sbjct: 461 AAKIPVPSRDPETGKKIVENIPAFFHTY-----QYVLGKRVGIIKFADQLTEMLSREPIR 515
Query: 403 HMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQV 460
+ P +PMLVPP W YN GG+ S MR + +Q + K + R L+ V
Sbjct: 516 DTLHPRLLPMLVPPRPWLSYNSGGYLQTKSVCMRIKDSAEQLIYLHKASERDLLQDVLAG 575
Query: 461 SRVLYSSIFYDLFNLYRLII 480
VL S+ + N++++I+
Sbjct: 576 LDVLGSTRWKVNKNVFKIIL 595
>gi|403413111|emb|CCL99811.1| predicted protein [Fibroporia radiculosa]
Length = 1321
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q VKVG L+ LM+ A + + VD+ G++ + +PAF H+ E L+G +
Sbjct: 537 WTQVVRVKVGSFLVDALMDVATVMRTGVDKRTGEAISEEQPAFFHSY-----EYLRGYKL 591
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI+ +PL+ + + K R + P ++PMLV P W +++GG+ + ++VMR +++Q
Sbjct: 592 GVIKLNPLISEKMAKESIRETLHPRHLPMLVKPKPWLSHDQGGYLYNKTWVMRFKESQEQ 651
Query: 443 RETIK 447
+ ++
Sbjct: 652 QSYLR 656
>gi|71013602|ref|XP_758640.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
gi|46098298|gb|EAK83531.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
Length = 1566
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 46/254 (18%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ LPA +A+IT+ +L + M+ G+V + +A Q+G AIE
Sbjct: 637 PFLRLLPASKLALITILEL--MRMSGNGDVSDGMKTTRAVLQVGRAIE------------ 682
Query: 268 KKKNATDNNLEGDSEPLTNDP---EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK----- 319
+E S+ + +P + Q L+KR LI ++++ K
Sbjct: 683 ---------MEYHSDIVRKNPKIFQNAYTAQTTLRKR--GLIDLAARREIKAWQKQQEDE 731
Query: 320 GHVDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
G + S P W Q +VG L+Q LM A + + D+ G + +PAF T +
Sbjct: 732 GVLSSIPSWTQTVRARVGSYLVQHLMNVATVNRKATDRDGVLWEEDQPAFYSTY-----Q 786
Query: 378 ALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
L G++ GVI+ + ++ + L+K + + P ++PMLVPP W ++ GG++ + MR
Sbjct: 787 YLGGKKLGVIKLNEVIARRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMR 846
Query: 436 THGARQQRETIKMT 449
+ +Q +++
Sbjct: 847 YKDSAEQGSYLRVA 860
>gi|242086118|ref|XP_002443484.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
gi|241944177|gb|EES17322.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
Length = 118
Score = 65.1 bits (157), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L+ RQ+K+E EAWE+ +EY+++ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 196 KDQATAQDKWKHMTYA----PYFNNLPADMMAVITMHKLVGLLMT 236
D+ +WK + + Y L AD + VI MHK++GLLM+
Sbjct: 71 CDR--HMQRWKRVKHVYGLRQYLLLLLADKVVVIVMHKMMGLLMS 113
>gi|325187365|emb|CCA21903.1| DNAdependent RNA polymerase putative [Albugo laibachii Nc14]
Length = 1012
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 138/342 (40%), Gaps = 58/342 (16%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ---AT 200
RQI++E ++ A +++ + D+ + A + ++L +GW EP I+ +Q
Sbjct: 171 RQIRLECAIYDMAVEKHLAVRQDVGKLGRASQVNAAQNLVVGWMEPAIALISNEQRDVLA 230
Query: 201 AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARI 260
+ Y P L A ++A ++++ ++ + ++ R ++ A +G +
Sbjct: 231 GKRSLDSSIYGPALLLLDAKVLAALSINTMLNNCLVDSKGARFIKLALALGNI------V 284
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
Q K+K D EK L + + + + ++ ++ V
Sbjct: 285 QEHICENKRKR--------------KDSEKYFL---SLVRGIQNDVFRKHMENV------ 321
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG-------------DSPPDIRPAF 367
+ + W + +KVG LI + + Y+ + Q + PP AF
Sbjct: 322 YTTAGYWDKRLNLKVGAALIDFIQRSCYVPDRLLQAAGRKVHGTLEEHDPEKPPKKEQAF 381
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHM-IIP----YMPMLVPPLNWRGYN 422
VH + E + RR G+ + + + T M ++P Y+PMLVPP W N
Sbjct: 382 VHC---YYYE--RNRRSGMFKMHDTIFNLILNTDPGMNVLPWTARYLPMLVPPKRWENPN 436
Query: 423 RGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
GG+ L + +MR Q + +K P L+ VF +L
Sbjct: 437 NGGYLKLHTKIMRQRDIVWQMDCVKRAP---LQEVFTTLNLL 475
>gi|443922649|gb|ELU42059.1| Rpo41p [Rhizoctonia solani AG-1 IA]
Length = 1371
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 317 IVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPPDIRPAFVHTLKSF 374
IV S P W Q V+VG L+ +M +AYI+ ++ G++ + +PAF+H+
Sbjct: 556 IVANMESSMPEWTQVVRVRVGSFLVDSVMNSAYIKRNGTNESGENLCEEQPAFMHSY--- 612
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSY 432
E ++G++ GVI+ +P+V + + + R + P ++PMLV P W Y++GG+ LP+
Sbjct: 613 --EYVRGKKLGVIKLNPVVGEKMARDPIRETLHPRHLPMLVKPQPWEDYDKGGYLKLPT- 669
Query: 433 VMRTHGARQQRETIK 447
VMR + +Q +K
Sbjct: 670 VMRIKDSPEQLSYLK 684
>gi|241948027|ref|XP_002416736.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223640074|emb|CAX44320.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1300
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 159/404 (39%), Gaps = 67/404 (16%)
Query: 91 SESELSGSEEVQELIDQFNEKGV---------SILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L S +V+++I+ +++ + + + S L ++ Y +
Sbjct: 319 SEAALEFSNQVEKIIEDMDDEALKHDIMNGQMNYFEMYSKLKTDEQRHAFNEALNVYNLD 378
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKSLFL---G 185
+++QI+I E W+ +E DL L C + L LP ++ +
Sbjct: 379 RQKQIEIRGIEGAKEKWKHDFEESHKRGDLNLSKGLNAQCYEWLQDMLPVLEKEYKQCEA 438
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRV 243
I KD A+D+ YAP+ L D ++T+ +L L T R
Sbjct: 439 LINGNNAVIEKDDPNAKDR---AMYAPFLLKLSPDKAIIVTILELFKLHATGGVISGFRA 495
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+A +G+AIE E RI L+ K++ KL R
Sbjct: 496 YKAIQSVGKAIEAEYRI---------------GLQA-------------KKENKLFSRKH 527
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
+ QKL + R + KG+ + W ++G L+ +LM A ++ + D
Sbjct: 528 LSPQLQKLMR-RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKLKVTRETPQGLIEDS 586
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGY 421
PAF H++ + + G R GVI+ + L T I P +PMLV P W Y
Sbjct: 587 HPAFFHSM-----QFIGGNRVGVIKVHTEISNILSGTSLTESIQPQALPMLVEPKPWNSY 641
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
GG + + ++R + + IK R L+ VF+ VL
Sbjct: 642 YGGGGLYSKTPLVRVRDSPETEAYIKAANERGNLKAVFEGLNVL 685
>gi|390596373|gb|EIN05775.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 968
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 32/297 (10%)
Query: 200 TAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT---NAGEVRVVQAACQIGEAIEN 256
TA+ K P+ + L +++IT+ +L+ L + N+G ++ +A +G+A+E
Sbjct: 100 TAKRSRKDERLGPFLSLLKPSKLSLITILELMHLSGSGGVNSG-MKTARALLTVGKAVEL 158
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL----IKKQKLQ 312
E + + ++ + + SE ++K + T L + +++
Sbjct: 159 EYKAEMCRRNDIQIPQASSTFASKSEI-----------EKKQRGFFTGLGYRELHARRVA 207
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQL-GDSPPDIRPAFVHT 370
R + + + W Q+ V+VG L+ LM+ A ++ ++++ G + PAF H+
Sbjct: 208 AARYVQEAEEWTSEWTQELKVRVGSFLVDTLMDVATVERTAINKVTGQEVTEEHPAFYHS 267
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFF 428
E +KG + G+I +P+V + + K R + P ++PMLV P W +N+GG+ +
Sbjct: 268 Y-----EYMKGHKLGIIRLNPVVAERMAKDNLRDTLHPRHLPMLVKPKPWLDHNQGGYIY 322
Query: 429 LPSYVMRTHGARQQRETI-KMTPRSQLEPVFQVSRVLYSS---IFYDLFNLYRLIIN 481
+ MR +R+Q + + + +E V+ VL S+ I D+F++ + N
Sbjct: 323 NKTSAMRFKESREQEVYLAHASAQGHVELVYAGLDVLGSTPWVINRDVFDIVLQVWN 379
>gi|224127286|ref|XP_002329240.1| predicted protein [Populus trichocarpa]
gi|222870694|gb|EEF07825.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
Y++G H FLPSYVMR HGA+QQRE +K PR QL+ VF+
Sbjct: 1 YDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQAVFEA 40
>gi|388578906|gb|EIM19238.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 1136
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 166/381 (43%), Gaps = 53/381 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNL---PYVKSLFLGWFEPLRDAIAKDQ-- 198
RQ +E A+E A ++ + ++ + ++ L P K ++ W + D AK Q
Sbjct: 145 RQRLLEESAYETAKARFEHEMNELEKAGVSTALSGHPLQKLMWDWWKKVSVDIQAKLQKS 204
Query: 199 -ATAQDKWKHMTY----APYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIG 251
T K K + P+ + L ++ M++IT+ +++ L T A ++ +A +G
Sbjct: 205 METTNPKTKEEKFMNEITPFLSLLSSEKMSLITVLEILRLSGTGGIAEGMKTTRALLSVG 264
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN-----DPEKLIKEQEKLKKRVTSLI 306
+A+ENE + +K + +E D++ + D K KE + T LI
Sbjct: 265 KAVENEHHAEIL---KQKHGISLKGVEADAKQVKRKLRYFDHRKAEKELDLKSPEFTGLI 321
Query: 307 -------------KKQKLQQVRG---IVKGHVD---SKPWGQDALVKVGCRLIQLLMETA 347
+ R +V+ ++ + W Q +KVG L+ LME A
Sbjct: 322 DDAMGTSEQSPEAHSHDIASERAKARVVEERMNKAWTPNWSQIIRIKVGSFLVDSLMECA 381
Query: 348 YIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT--GRH 403
I + G+ + +PAF S + + ++G++ GVI+ + V L+K G
Sbjct: 382 TITRTAKHPESGEEMTEAQPAF-----SQSYQYVRGKKLGVIKVNTAVADRLDKDPLGST 436
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQVSR 462
+ ++PMLV P W Y+ GG+ F + MR + +Q+ I K + +EPV
Sbjct: 437 IHPRHLPMLVKPKPWLRYDSGGYLFHKNSAMRFKDSNEQQSYILKASSEGTMEPVLAGLD 496
Query: 463 VLYSSIFYDLFNLYRLIINFL 483
VL ++ +N+ R + N +
Sbjct: 497 VLGATP----WNINRKVFNVV 513
>gi|406868664|gb|EKD21701.1| DNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1461
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 55/345 (15%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLG 185
+G + TA M + Q ++E A E A ++D + + L +L KSL
Sbjct: 343 EGIDLSTASEEMKREVQQRLEKNAVESAIDRWRDESIHLSKMGLNTSL-QTKSLGARMWK 401
Query: 186 W---FEP-LRDAIAKDQA----TAQDKWKHM--------TYAPYFNNLPADMMAVITMHK 229
W FE L+D IAK A TA+ K M Y P+ LP D +A +T+
Sbjct: 402 WQTVFEQYLKDEIAKVDAAENITAEKVNKKMLPEDLDRVIYGPFLRLLPPDKLAAVTILS 461
Query: 230 LVGLLMTNAG---EVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+ M++ G + + A I +++E+E + K++KK ++N N
Sbjct: 462 AM-TTMSSMGLDKGIPLSNAIMAIAKSVEDECAFDTIQKASKKNIWPNSN---------N 511
Query: 287 DPEKLIKEQEKLKKRVTS--LIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
P+ I + ++ + TS LI + + + + + W KVG L+ L+
Sbjct: 512 RPD--IGQLKRATRFRTSKPLIDLDQSETAEAL-----EDRQWPLAMRAKVGAFLMSALI 564
Query: 345 ETAYIQPPV----DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400
E A + PV + G+ ++PAF H + G++ GVI + + L++
Sbjct: 565 EVAKV--PVALTHPETGEIVTQMQPAFCHA-----HQYKLGKKVGVIMANKSLVATLKRE 617
Query: 401 GRH-MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQR 443
H ++ ++PMLV P W +++GG PS +MR G + QR
Sbjct: 618 PVHSLLAKHLPMLVEPEPWSDFSKGGFLAHPSKIMRVKTGDKDQR 662
>gi|443897435|dbj|GAC74776.1| mitochondrial/chloroplast DNA-directed RNA polymerase RPO41
[Pseudozyma antarctica T-34]
Length = 1509
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 62/287 (21%)
Query: 186 WFEPLRDAIAKDQATAQDKWK---HMTYA---------PYFNNLPADMMAVITMHKLVGL 233
W+ L+ A+ KD K H + A P+ LP +A+IT+ +L +
Sbjct: 556 WYNKLQTALNKDLDRLDSDLKNDVHTSKAMLPIEQQMLPFLRLLPVSKLALITVLEL--M 613
Query: 234 LMTNAGEV----RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP- 288
M+ G V + +A Q+G AIE E SE + +P
Sbjct: 614 RMSGNGGVSDGMKTTRALLQVGRAIETEYH---------------------SEVIRKNPK 652
Query: 289 --EKLIKEQEKLKKR------VTSLIKK-QKLQQVRGIVKGHVDSKP-WGQDALVKVGCR 338
+ Q LKKR IK+ QK Q+ +G++ S P W Q +VG
Sbjct: 653 IFQNAQAAQAALKKRGLVDFAARREIKEWQKQQEEQGVIS----SIPKWTQITRARVGSY 708
Query: 339 LIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL 397
L+Q LM+ A + + D+ G + +PAF T + L G++ GVI+ + +V K L
Sbjct: 709 LVQHLMQVATVNRKATDRDGILWEEDQPAFYSTY-----QYLGGKKLGVIKLNEVVAKRL 763
Query: 398 EKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
+K + P ++PMLVPP W ++ GG++ + MR + +Q
Sbjct: 764 DKDSISETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQ 810
>gi|444322297|ref|XP_004181804.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
gi|387514849|emb|CCH62285.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
Length = 1352
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 133/338 (39%), Gaps = 56/338 (16%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------ 197
RQ +ET + E A + ++ D + AP + W+ + I K+
Sbjct: 423 RQRVLETRSTEAAKERWKHDFMDAKSRGEAPFEKKLNVKLWEWYSQMLPLIKKEVEQANE 482
Query: 198 --QATAQDKWK----HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQ 249
Q + DK K YAPY N + + M VIT+ +L+ L T +R +A
Sbjct: 483 LLQDSLIDKRKAGGISSDYAPYLNLVDPEKMCVITILELLKLNSTGGVFEGMRTARAVIS 542
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL-IKK 308
+G+AIE E R + + N + ++ P K KKR+ I+K
Sbjct: 543 VGKAIELEFRSEQLIR----------NEMHTFKNVSTKPHVFKKYVWSAKKRLRDHNIEK 592
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR---- 364
K++ W Q A ++G +I L+ A V+ G P +
Sbjct: 593 SKIE--------------WPQAARAQIGSIMISTLLHVA----KVNVRGHDPKTNKYVYG 634
Query: 365 --PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRG 420
PAF H+ + G + GV++ + K L E+ + MPM+V P W
Sbjct: 635 ELPAFSHSYQYHN-----GAKIGVLKIHKSLIKQLNGERLATSVQPQQMPMIVKPRKWVS 689
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVF 458
+N GG+ + S ++RT + +Q +K L P
Sbjct: 690 WNSGGYHYSQSILIRTRDSPEQVAYLKAVSEENLIPTI 727
>gi|395323448|gb|EJF55919.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 1273
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 42/280 (15%)
Query: 204 KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQ 261
K + + +P+ L + +++IT+ +++ L + + ++ +A +G A+E E + +
Sbjct: 382 KSEEILLSPFLRMLSPEKLSLITIMEMMNLHGSGGVQDGMKTARALLSVGRAVEAEHKAE 441
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE-------QEKLKKRVTSLIKKQKLQQV 314
KK N + P N P ++ ++ +RVT+ + ++
Sbjct: 442 I----CKKNNISI------PVPAVNAPRAGVQNIFTGDGYKDLYARRVTAAKYMEDAEEW 491
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY----IQPPVDQLGDSPPDIRPAFVHT 370
+ W Q VKVG L+ +M+ A IQ P + G+ + +PAF H+
Sbjct: 492 ---------TSDWSQLIRVKVGSFLLDCIMDVATVSRTIQDP--RTGEKFTEEQPAFSHS 540
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
E +GR+ GVI+ +P V + K + ++PMLV P W YN GG+ +
Sbjct: 541 Y-----EYQRGRKLGVIKFNPAVADRMSKDPIADTLHPRHLPMLVKPKPWLSYNNGGYLY 595
Query: 429 LPSYVMRTHGARQQRETIKMTPRS-QLEPVFQVSRVLYSS 467
S+ MR +R+Q ++ + +LE VF VL S+
Sbjct: 596 SRSWAMRFKDSREQEIYLRHASEAGRLELVFAGLDVLGST 635
>gi|89148146|gb|ABD62816.1| mitochondrial single-subunit RNA polymerase [Polysphondylium
pallidum]
Length = 862
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/382 (19%), Positives = 167/382 (43%), Gaps = 78/382 (20%)
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETE----AWEQAAKEYQDLLADMCEQK 171
LD+ ++ + Q +K+ +AKY L + IK+ET+ + A K Y+ LL D +
Sbjct: 14 LDAKTIAELQKQKEEE---SAKYKELYEK-IKLETDFEISVTDTARKAYRQLLNDTSMIQ 69
Query: 172 LAPNLPYVKSLFLGWFEPLRDA----------------IAKDQATAQDKWKHMTYAP--- 212
+ L +K++ W++PL +++D + ++ P
Sbjct: 70 RSTGLKSIKNVMFQWYDPLIKHTTQELKSFQQANASVLLSEDPEAEAEALNPLSRVPSHV 129
Query: 213 -YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ-IGEAIENEARIQSFFKSTKKK 270
LP + +I ++++V ++++ ++ + + IGE++ E ++Q
Sbjct: 130 EVLTRLPMKKLCLIALNQMVSEILSDPQRGTIMTSIVENIGESVLAEYQMQ--------- 180
Query: 271 NATDNNLEGDSEPLTNDPEKLIKEQEKLK-KRVTSLIKKQ--KLQQVRGIVKGHVDSKPW 327
L+K+ ++L+ KR+ ++ ++ ++ ++
Sbjct: 181 --------------------LLKKYDRLQYKRLMKPFNGAVATVRTIQNYMRRAHNNLEQ 220
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVI 387
D + KVG +++ +M++ I +D G+ + PAF + + ++YGVI
Sbjct: 221 ESDTITKVGSFMVKSIMDSCMINKYID--GEDIDEKVPAFYYKYRYNN-----NKKYGVI 273
Query: 388 ECDPLVRKGLEKTGRHMIIPYM-----PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
C V +++ H ++ M PM+VPP W N+G + P ++MRT+G++ Q
Sbjct: 274 SCHDNVYSLMDEG--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQ 331
Query: 443 RETIKMTPRSQLEPVFQVSRVL 464
+ ++ +S L +++ VL
Sbjct: 332 KTSLY---QSDLTNIYEGLNVL 350
>gi|406603686|emb|CCH44839.1| DNA-directed RNA polymerase, mitochondrial [Wickerhamomyces
ciferrii]
Length = 1332
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 66/352 (18%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFE---PL-RDAIA- 195
RQ +E ++ E A ++++ + E K +L KSL GWFE PL RD I
Sbjct: 363 RQTALENKSIEAAQEKWKH---EYEEIKKRGDLGMSKSLNARLWGWFEQMMPLVRDEIER 419
Query: 196 ------------KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEV 241
K++A AQ + YAPY L + VIT+ +++ T + +
Sbjct: 420 CKNVDDIQIKTLKNEAFAQHS-ERKKYAPYLRLLDPKKVTVITILEMLKNNSTGGISEGM 478
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR 301
R +A + +A+E E R + + +KN N D+ L+N P+ L K L
Sbjct: 479 RTARAVLSVSKALELEFRSEQILNT--EKNFVKN---FDNSKLSN-PKNLKKYSMSLSNF 532
Query: 302 VTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQL 356
+I K+ W QD VK+G LI +LM A ++ P QL
Sbjct: 533 KNDVISDMKVY--------------WPQDIKVKIGSVLISILMHVAKVEVSGVDPSTKQL 578
Query: 357 --GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPML 412
G++P AF H+ + G + G+++ ++ L +K + +PML
Sbjct: 579 VRGEAP-----AFYHSFQYHN-----GAKIGILKIHKVLSSQLSADKLVGAVQPQSLPML 628
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
+ P W +N G +++ + ++R + +Q IK + +L+ V+ VL
Sbjct: 629 IQPRPWTSWNNGAYYYSQNQIIRLRDSPEQLAYIKAS-SDKLDKVYDGLNVL 679
>gi|299740865|ref|XP_001834061.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404445|gb|EAU87753.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1341
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 35/271 (12%)
Query: 179 VKSLFLGWFEPLRDAIA-------KDQATAQDKWK-HMTYAPYFNNLPADMMAVITMHKL 230
++ + GW E L+ +A K++A + + K APY + + +++IT+ +
Sbjct: 383 LQEMMYGWHEKLKKRVAELVSQIEKEEAAGKYRLKPKAELAPYLALVQPERLSMITILEA 442
Query: 231 VGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+ L + A ++ +A IG+A+E E + + +K ++ S P T
Sbjct: 443 MRLCGSGGVASGMKSTRALVSIGKAVEMEYKA----RVCRKNRIVIPDV---SRPDT--- 492
Query: 289 EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
Q+ S + +++L + + G + PW Q ++G L+++LM+ A
Sbjct: 493 ------QDVFSSLGYSNLHERRLAAAKQMTAGESWTAPWSQTTRAQIGALLMEVLMQVAT 546
Query: 349 I-QPPV-DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEK-TGRHMI 405
+ Q V ++ G+ + PAF H+ E ++G + GVI+ + V + + K + I
Sbjct: 547 VPQTAVNEETGEVLTEEHPAFFHSY-----EYMRGTKLGVIKVNHAVSERIAKDVLKGTI 601
Query: 406 IP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
P ++PML PP W N GG+ + + +MR
Sbjct: 602 HPRHLPMLHPPKPWVRANEGGYLYTKTPLMR 632
>gi|45185910|ref|NP_983626.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|44981700|gb|AAS51450.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|374106832|gb|AEY95741.1| FACR224Cp [Ashbya gossypii FDAG1]
Length = 1295
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 39/281 (13%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFK 265
+ YAPY + + M VIT+ +L+ L T +R +A IG+A+E E R ++ K
Sbjct: 441 LEYAPYITLVNPEKMCVITILELLSLNSTGGVSEGMRTTRAVLAIGKAVEMEYRSEALLK 500
Query: 266 STKK--KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
S K K N+ E +KL +R + + ++++ + +
Sbjct: 501 SEKSIFKEVRANS----------------NEFKKLVQRAKTTFRNTQIEESKVL------ 538
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPPDIR-PAFVHTLKSFTKEALKG 381
W + KVG LI +L+ A + VD + + + PA HT + G
Sbjct: 539 ---WPHNIKAKVGSLLISMLIHVAKVNVKGVDPVTNKTVYGKAPAICHTF-----QYRMG 590
Query: 382 RRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ GV++ + + ++ + ++PMLV P W +N GG+ F S ++R+ +
Sbjct: 591 SKVGVLKLHRSLANQMSSDRLSANFQPQHLPMLVKPRPWTSWNSGGYLFTKSTLIRSKDS 650
Query: 440 RQQRETIK-MTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLI 479
+Q IK +T + ++ V++ VL + + N+ +I
Sbjct: 651 PEQSAYIKAVTGKGVVQNVYKGLNVLGETAWTVNKNMLHII 691
>gi|413947445|gb|AFW80094.1| hypothetical protein ZEAMMB73_281983 [Zea mays]
Length = 277
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 350 QPPVDQLGDSPPDIRPAFVHTL-KSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
+PP DQ DS P P F H L K + +++ VI D LV +G E T RH+ IPY
Sbjct: 181 KPPADQTPDSSP---PTFKHVLCKPIIENGRLKKKHWVI--DHLVHEGFESTARHVDIPY 235
Query: 409 MPMLVPPLNWRGYNRG 424
+PMLVPP W+G G
Sbjct: 236 LPMLVPPKKWKGVLHG 251
>gi|238879434|gb|EEQ43072.1| hypothetical protein CAWG_01309 [Candida albicans WO-1]
Length = 1280
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 163/405 (40%), Gaps = 69/405 (17%)
Query: 91 SESELSGSEEVQELIDQFNEK---------GVSILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L +++V+++I+ +++ ++ + S L + +++ + +
Sbjct: 299 SEAALKFADQVEKIIEDVDDEVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLE 358
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLG 185
+++QI+I E W+ +E Q DL L C + L LP ++ L
Sbjct: 359 RQKQIEIRGIEGAKEKWKHDFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEA 418
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--- 242
I KD A+D+ YAP+ + D +IT+ +L L T G VR
Sbjct: 419 LINGNNSVIEKDDPNAKDR---AMYAPFILKISPDKAIIITILELFKLHST-GGVVRGFR 474
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
+A +G+AIE E RI KK+N KL Q+ L ++
Sbjct: 475 AYKAIQSVGKAIEAEYRIGL---QAKKEN------------------KLFS-QKHLSPQL 512
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L++ R + KG+ + W ++G L+ +LM A + + D
Sbjct: 513 QKLMR-------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIED 565
Query: 363 IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRG 420
PAF H + + + G R GVI+ + L T I P +PMLV P W
Sbjct: 566 FHPAFYHGM-----QFIAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNS 620
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
+ GG + + ++R + + +K R L VF+ VL
Sbjct: 621 FYGGGSLYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVL 665
>gi|68473800|ref|XP_719003.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
gi|68474009|ref|XP_718901.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440694|gb|EAK99997.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440800|gb|EAL00102.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
Length = 1300
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 163/405 (40%), Gaps = 69/405 (17%)
Query: 91 SESELSGSEEVQELIDQFNEK---------GVSILDSSSMLDKQPKKKGTGMGTAKYYML 141
SE+ L +++V+++I+ +++ ++ + S L + +++ + +
Sbjct: 319 SEAALKFADQVEKIIEDVDDEVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLE 378
Query: 142 KRRQIKIE-----TEAWEQAAKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLG 185
+++QI+I E W+ +E Q DL L C + L LP ++ L
Sbjct: 379 RQKQIEIRGIEGAKEKWKHDFEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEA 438
Query: 186 WFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--- 242
I KD A+D+ YAP+ + D +IT+ +L L T G VR
Sbjct: 439 LINGNNSVIEKDDPNAKDR---AMYAPFILKISPDKAIIITILELFKLHST-GGVVRGFR 494
Query: 243 VVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV 302
+A +G+AIE E RI KK+N KL Q+ L ++
Sbjct: 495 AYKAIQSVGKAIEAEYRIGL---QAKKEN------------------KLFS-QKHLSPQL 532
Query: 303 TSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD 362
L++ R + KG+ + W ++G L+ +LM A + + D
Sbjct: 533 QKLMR-------RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIED 585
Query: 363 IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRG 420
PAF H + + + G R GVI+ + L T I P +PMLV P W
Sbjct: 586 FHPAFYHGM-----QFIAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNS 640
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
+ GG + + ++R + + +K R L VF+ VL
Sbjct: 641 FYGGGSLYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVL 685
>gi|344232068|gb|EGV63947.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1279
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 123/284 (43%), Gaps = 43/284 (15%)
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAA 247
+++A ++D+A +++ YAPY + + M +T+ +L+ L T A +R +A
Sbjct: 413 IQNAKSEDRALVKER---SYYAPYLTLVTPEKMCAVTILELLRLNSTGGIADGMRTARAL 469
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
+G+AIE E + Q +S KK + + +E K+ + + + K
Sbjct: 470 ISVGKAIELEYKSQKLMESEKKSISK--------------KSRSAREWNKIFRVMNNYSK 515
Query: 308 KQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDI 363
Q W K+G L LL+ A + PV G +
Sbjct: 516 DSDNQA----------HNEWDNTLHAKIGSILTSLLIHVAKV--PVKGTDPATGKTVTGS 563
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGY 421
+PAF HT + L+G++ GV++ + K L + G + ++PML PP W Y
Sbjct: 564 QPAFFHTY-----QYLQGQKLGVLKLHKNIIKQLSVDVDGSLLQPHFLPMLTPPRKWSSY 618
Query: 422 NRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVL 464
N GG+ F + ++RT + + +K + R L+ V+ VL
Sbjct: 619 NEGGYLFSQNTLVRTRDSPETLAYLKAASQRGDLDKVYDGLNVL 662
>gi|89148144|gb|ABD62815.1| mitochondrial single-subunit RNA polymerase [Vermamoeba
vermiformis]
Length = 992
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 129/330 (39%), Gaps = 45/330 (13%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEP------------- 189
+ Q+ +E EA E+ AK++++L+ D+ + L L WF+P
Sbjct: 149 KEQLYLEMEAVEREAKKFKELVDDVLKLNRGACLDPGTEFLLQWFQPLVKLLDLEKQLSL 208
Query: 190 --------LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV 241
LR ++ +++ H Y + N + +D +AVI +H+L+G +
Sbjct: 209 ADPGVHQELRASVEALGVLYNEQYLH-EYHAHTNEVASDKLAVIVIHELIGAAAGLKEQS 267
Query: 242 RVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLT-NDPEKLIKEQEKLKK 300
V QI EA++ E Q K+ +N E + P + +P + K KK
Sbjct: 268 PVRSVVQQISEAVQGEVNWQDL------KDELENPAESRATPDSAENPSGTVP--AKKKK 319
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI--QPPVDQLGD 358
RV + +L R +K W + +G RL+ LL+ A + + PV +
Sbjct: 320 RVVNFTSVNRLN--RRALKVLGSEALWSRGLKEFMGARLLALLLSVAQLREEDPVTGIFH 377
Query: 359 SPPDIRPAF-VHTLKSFTKEALKGRRYG---VIECDPLVRKGLEKTGRHM--IIPYMPML 412
+ RPAF V KE + + VR + H I PM
Sbjct: 378 A----RPAFEVSHRTQHRKEGMDSTHNPSRLSVSASEAVRARFDAMMTHFFHFIRQYPMQ 433
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
+PP W +RGG+ + + R +Q
Sbjct: 434 IPPRPWDSPDRGGYLAVQVPIFRYQSYEEQ 463
>gi|414090089|ref|YP_006990207.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
gi|409995511|gb|AFV51444.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
Length = 883
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 129/324 (39%), Gaps = 76/324 (23%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E EA+E ++ + +AD K +A LP + WFE
Sbjct: 32 LAREQLALEHEAYEMGEARFRKIFERQLKAGEVADNAAAKPLVATLLPKMIERIHAWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ + + K T + + + +A IT+ ++G L T+A + V AA
Sbjct: 92 V----------SAKRGKRPTAFKFLQEVKPEAIAYITIKTVLGTL-TSAEQTTVQAAASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
+G AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 VGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK LQ V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFLQVVEADMLSKGLMGGEAWSS-WHKEDSIHVGVRCIEMLIEATGLVVLERQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D A +L S +A+ R + P+ Y P +VPP W
Sbjct: 238 GAD---AETLSLASEYADAIATRAGALAGISPM---------------YQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHGAR 440
GG++ P ++RTHG +
Sbjct: 280 TVTGGGYWANGRRPLALVRTHGKK 303
>gi|164655881|ref|XP_001729069.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
gi|159102958|gb|EDP41855.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
Length = 1358
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 48/329 (14%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKD 197
L RQ +E A E A K + + E L + K+L W++ L A+ KD
Sbjct: 402 LYERQRWLEHSALEAARKRLEHDTEKLQELGLDSSRFQSKTLQAWMWDWYQKLEVALRKD 461
Query: 198 QATAQDKWKHMTYA-------PYFNNLPADMMAVITMHKLVGL--LMTNAGEVRVVQAAC 248
+ +H + P+ LPA MA+I + +++ + + A ++ +A
Sbjct: 462 IERLGRQTRHAVASSMDAQLYPFLCLLPASKMAMIVILEIMRMQGISGVADGIKTTRALI 521
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE---QEKLKKR-VTS 304
+G+AIE E + L PE ++ Q+ L KR +
Sbjct: 522 TVGKAIETEY---------------------SAVMLNKHPEIFVQARAAQQMLGKRSLID 560
Query: 305 LIKKQKLQ--QVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSP 360
L ++ L+ Q R + + P W Q +VG L+Q L++ A + D+ G+
Sbjct: 561 LAARRDLKAWQERCREENIETNVPKWTQIIRARVGSFLVQHLLDVATVHRKAYDRDGELW 620
Query: 361 PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNW 418
+ +PAF E ++G++ GVI + +V + L+K R + P ++PMLVPP W
Sbjct: 621 EEDQPAFYSAY-----EYIQGKKLGVIRLNEVVSQRLDKESVRETLHPRHLPMLVPPRPW 675
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIK 447
++ GG++ + + MR + +Q ++
Sbjct: 676 LSHDSGGYYSMKTSAMRYKDSVEQSSYLR 704
>gi|410730293|ref|XP_003671326.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
gi|401780144|emb|CCD26083.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Length = 1354
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 62/340 (18%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKDQAT 200
RQ +E+ A + A + ++ D E K +L KSL W+E + + K+
Sbjct: 429 RQRALESRAADAAKERWK---HDFEEAKERGDLSIRKSLNVKLWNWYELMLPILKKEIEK 485
Query: 201 AQDK-------WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
AQ K +K + PY + + M VIT+ +L+ L T +R +A +G
Sbjct: 486 AQLKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILELLKLNSTGGVIEGMRTARAVISVG 545
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
+AIE E R + K + + D K E +K+ +R S + +L
Sbjct: 546 KAIEMEFRSEQLLK--------------NESSIFKDINKKSAEFKKIVQRAKSNFRSTQL 591
Query: 312 QQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIR 364
++ + W Q ++G LI L+ A I P+ + G++P
Sbjct: 592 EKSKIF---------WPQAVRAQIGSILISTLIHVAKIDVEGFDPITKTKVYGEAP---- 638
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRG 420
AF H+ + G + GVI+ + L G ++ +PMLV P W+
Sbjct: 639 -AFAHSY-----QYCNGMKLGVIKIHKALINQL--NGERLVASVQPQLLPMLVEPREWKN 690
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQ 459
+ GG+F+ S ++R+ + +Q +K ++ + ++ V+
Sbjct: 691 WRSGGYFYTQSTLIRSKESPEQLAYLKAVSDKEAIDDVYN 730
>gi|242818630|ref|XP_002487156.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713621|gb|EED13045.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 26/237 (10%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
K+ +A + LP D +A IT+ ++ L E ++V +G+ ++NE QS
Sbjct: 418 KNREHADFLRILPPDTLAAITVMHVIQLFARAGVEKGLKVPTIMTSLGQEVQNEFIAQSM 477
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+++ + K IK+ + +K+ IK +KL V+
Sbjct: 478 IAKSERDSRH---------------HKFIKQVVENRKKKAGRIKFKKLLTEMKSNSRDVE 522
Query: 324 SK-PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF--TKEALK 380
S+ W D KVG L+ +L + A + PV Q PD + + +F + E +
Sbjct: 523 SEFTWPVDVHAKVGGALLSVLFDCA--KAPVIQ---EDPDTKKRIMVMESAFQHSYEINR 577
Query: 381 GRRYGVIECDPLVRKGLEKTGRHMI-IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
GR++G++ P V + L + + + +MPML P W +++GG S +MRT
Sbjct: 578 GRKFGLLHAHPEVTRRLIREAPNAVQARHMPMLSEPQPWTAFDKGGFLAQRSPIMRT 634
>gi|336379013|gb|EGO20169.1| hypothetical protein SERLADRAFT_363576 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1134
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V+VG L+ LM+ A + + +D+ ++ + +PAF H E ++G++
Sbjct: 356 WTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAY-----EYVRGQKL 410
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P+V + K G R + P ++PMLV P W Y++GG+ + S MR +++Q
Sbjct: 411 GVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQ 470
Query: 443 RETIKMTPR-SQLEPVFQVSRVLYSSIFYDLFNLYRLII 480
+ ++ +E V+ VL S+ + N++ +++
Sbjct: 471 QSYLQHASELGNVELVYAGLDVLGSTPWKINRNVFDVVL 509
>gi|301106056|ref|XP_002902111.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
gi|262098731|gb|EEY56783.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
Length = 1070
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/389 (20%), Positives = 152/389 (39%), Gaps = 64/389 (16%)
Query: 78 TSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAK 137
T +A + E S E+V + ++ F + S+ + Q ++ +
Sbjct: 110 TEEEFADSVELAKSARSFMSDEDVDKWLESFEIPNDELAKCSTPEETQNMRR-------R 162
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD 197
Y RQ+++E +E A +Y + + + + K L W + I +
Sbjct: 163 Y----ARQLRLECSVYEMAMDKYSASHDKVRQLGRSTSTNAAKDLITKWMPQAQKYIESE 218
Query: 198 QATAQDKWKHMT----YAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEA 253
Q + H T Y P L D++A I M+ ++ + + + + ++ A +G+A
Sbjct: 219 QKKIKSG-THSTDSNIYGPALMLLRHDILAAIGMNIMLNMCLMESKGPKFIKLALAMGKA 277
Query: 254 IENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQ 313
++ E + + E + K + K + K KL+
Sbjct: 278 VQEE--------------------------IISKKETISKRYQDDDKFYLQVSKNIKLES 311
Query: 314 VRGIVKGHVDS-KPWGQDALVKVGCRLIQLLMETAYIQPPVDQL---------GDSPPDI 363
++ +K +VDS W + +KVG ++ + T Y+ ++ G PP+
Sbjct: 312 LKMRMKEYVDSVGGWDKRLQLKVGAAVVDCIQRTCYVPNEYGEVSTPELCAAKGLPPPE- 370
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHM-IIP----YMPMLVPPLNW 418
PAF+H F + RR GVI+ + + T ++P Y+PMLVPP W
Sbjct: 371 -PAFIHNY-VFDR----NRRAGVIQIHQRMADTVLATNPDANVLPWTARYLPMLVPPRPW 424
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIK 447
GG+ L + +MR + Q + ++
Sbjct: 425 TSVINGGYLKLRTKIMRQRDSAWQMDCVQ 453
>gi|336366344|gb|EGN94691.1| hypothetical protein SERLA73DRAFT_114135 [Serpula lacrymans var.
lacrymans S7.3]
Length = 986
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V+VG L+ LM+ A + + +D+ ++ + +PAF H E ++G++
Sbjct: 208 WTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAY-----EYVRGQKL 262
Query: 385 GVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P+V + K G R + P ++PMLV P W Y++GG+ + S MR +++Q
Sbjct: 263 GVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQ 322
Query: 443 RETIKMTPR-SQLEPVFQVSRVLYSSIFYDLFNLYRLII 480
+ ++ +E V+ VL S+ + N++ +++
Sbjct: 323 QSYLQHASELGNVELVYAGLDVLGSTPWKINRNVFDVVL 361
>gi|453081581|gb|EMF09630.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 1450
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 208 MTYAPYFNNLPADMMAVIT----MHKLVGLLMTNA----GEVRVVQAACQIGEAIENE-- 257
+ Y PY LP +A T M ++ G T E ++ A + +A+E+E
Sbjct: 462 LVYGPYLELLPVKKVAANTILHVMTRMAGDKNTITEQFESETKLGTLAINLSKALESEWL 521
Query: 258 ARIQS-FFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQV 314
A + KS KK + NL + I+ EK K R +K+++Q
Sbjct: 522 ATVAGKGGKSASKKPHSTANLR----------RRAIRALEKGIEKSRPGKSKRKKEIQAA 571
Query: 315 RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----LGDSPPDIRPAFVHT 370
V+ W VK+G L+ LMETA Q PV + + ++PAF+H
Sbjct: 572 LAQVE-------WPVSVKVKLGAMLVSKLMETA--QLPVTREHPRTKEQVTQMQPAFMHR 622
Query: 371 LKSFTKEALKGRRYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+K + G+R GV +P L++K + ++ MPM+VPPL W G+ +GG+
Sbjct: 623 MKYY-----HGKRVGVFMPNPALIQKIKSEPVGSLLAKRMPMVVPPLPWTGWAKGGYLHY 677
Query: 430 PSYVMR 435
+ ++R
Sbjct: 678 SNPILR 683
>gi|154290650|ref|XP_001545917.1| hypothetical protein BC1G_15645 [Botryotinia fuckeliana B05.10]
Length = 1234
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 148/344 (43%), Gaps = 41/344 (11%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG-----WFEPLRDAIAKD-- 197
Q ++E +A + A ++D ++ L+ +L +S LG W L D + ++
Sbjct: 195 QAQLEEDAVQAAIDRWRDESVNLTRLGLSTSL---QSKSLGARMWKWHVALTDTLKEELK 251
Query: 198 --------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAA 247
Q + + Y P+ LPA+ +A +T+ + L ++ + + + +
Sbjct: 252 AIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGIDKGLTLSFSI 311
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
QI +++E+E+ ++ ++ K + +D+ + L +++K + +T
Sbjct: 312 LQIAKSVEDESIFETIQQNMAKPSWSDS-VADRVRTL-----RILKAKAHGNSELTDNTN 365
Query: 308 KQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDI 363
V + + W KVG L++ L++ A + PV + ++ +
Sbjct: 366 STSFSP-DAFVSSQIRAHEWSVGIKAKVGSFLLESLLKVAKV--PVTMVHPETNETVTQM 422
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPLNWRGYN 422
+PAF H ++ GR+ GVI + ++ + L++ H ++ ++PMLV P W G++
Sbjct: 423 QPAFSHA-----QQYRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPEPWTGFS 477
Query: 423 RGGHFFLPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQVSRVL 464
GG P VMR A Q+ R L VF+ +L
Sbjct: 478 SGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNIL 521
>gi|429243230|ref|NP_594459.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe
972h-]
gi|384872627|sp|O13993.2|RPOM_SCHPO RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|347834189|emb|CAB16197.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe]
Length = 1154
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 52/352 (14%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
RV +G + E E + + K K+ D + + L NDP K
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKD---KKRLKELFNDPRKF----- 443
Query: 297 KLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 444 ------RQAVKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTY-----QYSNGRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQ 459
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFK 600
>gi|378726279|gb|EHY52738.1| DNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1425
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 130/308 (42%), Gaps = 42/308 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVK--SLFLGWFEPLRDAIAKD---- 197
RQ K+E +A + A + ++ + +L + K +L W E L + I +
Sbjct: 353 RQRKLERDAIQSALQRWKTEYQKRARSGITGDLAHGKIGALLWQWHEILAEKITNEIKLA 412
Query: 198 --------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG---EVRVVQA 246
+ TAQ K + +P+ LPA+ +A +T L+ + M+ G + ++V+
Sbjct: 413 REEDATPGKKTAQQKLR-AECSPFLELLPAERLAAVTSVALMQI-MSKVGASKQAKLVRL 470
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
++G+AIE E + +K+NA E +E P K + + R +S
Sbjct: 471 VTELGQAIETE---YDATQVAQKRNAMLKAKEKLAETAPGAPLKWDETLDNTLHRRSS-- 525
Query: 307 KKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIR 364
+ K W + K+G L +L+ +TA I + G +
Sbjct: 526 --------HHAATPYAYKKNWSKTIHAKLGSVLCELMFDTAKIMITREDKTTGKKVSIAQ 577
Query: 365 PAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNR 423
P F+H+ S+ GRR G + + V+ + + H+I +PM+ PP W+G+
Sbjct: 578 PVFIHS-TSYQN----GRRVGTVSLHEDFVKILVSEPAEHLIAKQLPMVCPPRPWKGFYD 632
Query: 424 GGHFFLPS 431
GG FL S
Sbjct: 633 GG--FLES 638
>gi|347838129|emb|CCD52701.1| similar to mitochondrial DNA-directed RNA polymerase [Botryotinia
fuckeliana]
Length = 1399
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 148/344 (43%), Gaps = 41/344 (11%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG-----WFEPLRDAIAKD-- 197
Q ++E +A + A ++D ++ L+ +L +S LG W L D + ++
Sbjct: 360 QAQLEEDAVQAAIDRWRDESVNLTRLGLSTSL---QSKSLGARMWKWHVALTDTLKEELK 416
Query: 198 --------QATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAA 247
Q + + Y P+ LPA+ +A +T+ + L ++ + + + +
Sbjct: 417 AIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGIDKGLTLSFSI 476
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
QI +++E+E+ ++ ++ K + +D+ + L +++K + +T
Sbjct: 477 LQIAKSVEDESIFETIQQNMAKPSWSDS-VADRVRTL-----RILKAKAHGNSELTDNTN 530
Query: 308 KQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDI 363
V + + W KVG L++ L++ A + PV + ++ +
Sbjct: 531 STSFSP-DAFVSSQIRAHEWSVGIKAKVGSFLLESLLKVAKV--PVTMVHPETNETVTQM 587
Query: 364 RPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPLNWRGYN 422
+PAF H ++ GR+ GVI + ++ + L++ H ++ ++PMLV P W G++
Sbjct: 588 QPAFSHA-----QQYRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLVKPEPWTGFS 642
Query: 423 RGGHFFLPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQVSRVL 464
GG P VMR A Q+ R L VF+ +L
Sbjct: 643 SGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNIL 686
>gi|449541840|gb|EMD32822.1| hypothetical protein CERSUDRAFT_57977 [Ceriporiopsis subvermispora
B]
Length = 966
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 47/291 (16%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKS 266
+ +P+ L + +++IT+ +L+ L T + ++ +A +G A+E E + Q
Sbjct: 85 SLSPFLTLLKPEKLSLITILELMNLHGTGGVSDGMKTARALLGVGRAVELEHKAQM---- 140
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHVD 323
KK N + Q + ++ TSL + + LQ R + +++
Sbjct: 141 CKKNN-------------------IAIPQSQFARQDTSLFTRLGYRDLQARRVAARKYME 181
Query: 324 -----SKPWGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSP-PDIRPAFVHTLKSFTK 376
+ W Q VKVG L+ LM+ A I + D G+ + +PAF H+
Sbjct: 182 DAEDWTSDWSQLVRVKVGGFLVDCLMDVATITRSMTDPNGEEIYSEEQPAFFHSY----- 236
Query: 377 EALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVM 434
E ++G + GVI+ +P+V + + K ++ + P ++PMLV P W G ++GG+ + + M
Sbjct: 237 EYVRGHKLGVIKLNPVVAERMAKDRIKNTLHPRHLPMLVKPKPWLGPDQGGYMYNRTTAM 296
Query: 435 RTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLIINFLM 484
R + +Q ++ + LE V+ VL S+ +N+ R I + ++
Sbjct: 297 RYKDSVEQANYLRHASAAGNLELVYAALDVLGSTP----WNINRRIFDIVL 343
>gi|393219634|gb|EJD05121.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 1397
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 162/381 (42%), Gaps = 51/381 (13%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR---- 191
A Y L ++K E+E E+ Q L++ ++ + W E L+
Sbjct: 369 ASVYDLANERLKHESEKLEEVVGNEQKLMSAQLQKWM-----------FDWHEKLQRRLT 417
Query: 192 ---DAIAKDQATA----QDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VR 242
+ I +D+A+ +D M P+ + L +++IT+ +L+ L T ++
Sbjct: 418 AEIEIIIRDEASVGPSRKDSNTKMRMGPFLSLLKPSKLSLITILELMRLQGTGGVTEGMK 477
Query: 243 VVQAACQIGEAIENEARIQSFFKST------KKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
+A +G+AIE E + Q K+ + T G I
Sbjct: 478 TARALLTVGKAIEMEYKAQILKKNNVHVPVMSSFSLTAAGGAGAGGGGGGAGGGGIGGGG 537
Query: 297 KLKKRVTSLIKKQKLQQVR----GIVKGHVDSKPWGQD----ALVKVGCRLIQLLMETAY 348
+ + ++ +++R K DS+ W D V+V L+ LM+ A
Sbjct: 538 VGRINDSGFFTRRAYEELREWRKAASKHFEDSQEWASDWTHAIRVRVASFLVDCLMDVAT 597
Query: 349 I-QPPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMI 405
+ + V++ G+ + +PAF + E L+G R GVI +P+V + L+K R +
Sbjct: 598 VTRTAVNRRTGEEIFEQQPAFFQSY-----EYLRGHRLGVIRLNPVVAERLQKDDIRATL 652
Query: 406 IP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQVSRV 463
P ++PMLV P W ++ GG+ + + VMR ++Q ++ ++ +E VF V
Sbjct: 653 HPRHLPMLVKPKAWINHDEGGYIYNKNSVMRLKDTQEQLTYLRHAAQAGHMEHVFASLDV 712
Query: 464 LYSS---IFYDLFNLYRLIIN 481
L S+ I ++F++ + N
Sbjct: 713 LGSTPWVINREIFDVVLQVWN 733
>gi|296424611|ref|XP_002841841.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638090|emb|CAZ86032.1| unnamed protein product [Tuber melanosporum]
Length = 1416
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD 203
RQ +E A++ A + ++ + E+ + + SL W + L I ++ Q
Sbjct: 355 RQKLLEEHAFDSARERWKRDFESLSERGVIKQDAEINSLLWEWHQALVPLIHEELKRVQH 414
Query: 204 KWKHMT----------YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIG 251
+ T Y P+ + + +A IT+ +L+ N ++ +A Q+G
Sbjct: 415 AEESGTKAAGAVDRCFYGPFMRVIEPEKLAAITIIELLRTHTLNGVGAGLKASRAVLQLG 474
Query: 252 EAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKL 311
+E E + Q K + + N + + E + D + +LI K K
Sbjct: 475 REVELEYQAQEVAKQ-RGEGFFANMSKAELETIFRD-----------RSAFRNLISKSK- 521
Query: 312 QQVRGIVKGHVDSKP-WGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDI-- 363
+ P W VK+G LI +L+ A I P + + +S I
Sbjct: 522 ----SASDLDFEEIPEWPNTVKVKLGGVLISMLIHVARIPVEAAVPGLTEGTESSEKIVQ 577
Query: 364 -RPAFVHTLKSFTKEALKGRRYGVIECDP-LVRK-GLEKTGRHMIIPYMPMLVPPLNWRG 420
PAF H E +GR+ GV++ P LV++ G + I +PM+V PL W
Sbjct: 578 HLPAFQHCY-----EYQRGRKLGVVKLHPELVKRLGTDDLNFTAIGKSLPMVVRPLPWTD 632
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTP-RSQLEPVFQVSRVL 464
++ GG+F+ S V+R + +QR+ +K R L+ +F VL
Sbjct: 633 WDEGGYFYTRSKVVRIRESVEQRQYVKAAAERGHLDHLFAGLDVL 677
>gi|149940228|emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
Y+ GGHFFLPSY+MRTHG+RQQ++ ++ P SQ++ +++ L S+
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGST 47
>gi|156049831|ref|XP_001590882.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980]
gi|154693021|gb|EDN92759.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1392
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 123/272 (45%), Gaps = 36/272 (13%)
Query: 187 FEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVV 244
+ + +A AK +A D Y P+ LPA+ ++ +T+ + L ++ + + +
Sbjct: 416 LKAIDEAEAKQHRSAAD-ISRCEYGPFLRYLPAEKLSALTIISHMHALSSSGIDKGLTLS 474
Query: 245 QAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND-PEKLIKEQEKLKKRV- 302
A QI +++E+E S F+S ++ A +PL D P + LK R
Sbjct: 475 FAILQIAKSVEDE----SIFESIQQNKA---------KPLFRDSPADRARMLRILKSRAR 521
Query: 303 ----TSLIKKQKLQQV-RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD--- 354
S+ + V + S+ W KVG L++ L++ A + PV
Sbjct: 522 GASGESIDENHSTNHSSEEFVLSQIRSREWSIGIRAKVGSFLLESLLKVAKV--PVTLKH 579
Query: 355 -QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPML 412
+ ++ ++PAF H ++ G++ GVI + ++ + L++ H ++ ++PML
Sbjct: 580 PETNETVTQMQPAFSHG-----QQYRLGKKLGVINANKVIVELLKREPVHSLLAKHLPML 634
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRT-HGARQQR 443
V P W G++ GG P VMR +G + QR
Sbjct: 635 VKPEPWTGFSSGGFLRHPGKVMRVKNGDQDQR 666
>gi|258573307|ref|XP_002540835.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901101|gb|EEP75502.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1231
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 163/402 (40%), Gaps = 56/402 (13%)
Query: 91 SESELSGSEEVQELIDQFNEKGV---SILDSSSMLDK-----QPKKKGTGMGTAKYYMLK 142
SE LS E+ I ++KG+ S+ ++ S+ DK + + +G K L+
Sbjct: 161 SELNLSPPEDAIPEIRSVSQKGLGLQSLKEALSLFDKSKSFRELEAEGEISSVEKQRRLE 220
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAI-------- 194
+ I E W KE +D + + L P+ + +L W + L +I
Sbjct: 221 QDSIVAAMERWR---KESEDRAS---KTGLGPSEKKMGALLWDWQQCLLTSIQSEMQSAL 274
Query: 195 ---AKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQ 249
K++ T +D YAP+ + + A+ ++ IT+ + L + + +R+ +
Sbjct: 275 RAQEKERKTPEDN-DRCEYAPFLSTIGAEKLSAITILATMNALGRSGMDKGIRLTRLIMV 333
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+A++ E +S T++ + + EKLI ++ K R
Sbjct: 334 LGKAVQEEYLADRIRESAYDSAHTNSANSANRAKMV---EKLIASKDHSKWRYL------ 384
Query: 310 KLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI----RP 365
VR + H + W K+G L +L + + PV+ ++ +P
Sbjct: 385 ----VRKYNESH-EPVNWSAATEAKIGALLASMLFSSTKV--PVEHKNPETREVTVSKQP 437
Query: 366 AFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AF H + KG G ++ D +V K + H++ ++PM+ PP W Y+ G
Sbjct: 438 AFRHVY-----QLEKGFSIGYVQLHDSIVEKLGREPASHLLAKHLPMVSPPAPWSSYHHG 492
Query: 425 GHFFLPSYVMRTH--GARQQRETIKMTPRSQLEPVFQVSRVL 464
G PS V+R A Q + + R L+ +F VL
Sbjct: 493 GFLEQPSLVIRARPDNALQLQYVKAASRRGDLDEIFAGLNVL 534
>gi|50292665|ref|XP_448765.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528077|emb|CAG61728.1| unnamed protein product [Candida glabrata]
Length = 1326
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPYF + + M VIT+ +L+ L T +R +A + +AIE E R + S
Sbjct: 472 YAPYFTLVNPEKMCVITILELLKLNSTGGVIDGMRTARAVISVSKAIELEFRSEQLLNS- 530
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS---LIKKQKLQQVRGIVKGHVDS 324
+N T ++ K+ + K+ V S + ++++ R I
Sbjct: 531 --ENQTFKDIN--------------KKSHEFKRYVQSAKRTFRSMEIEKSRII------- 567
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---LGDSPPDIRPAFVHTLKSFTKE 377
W Q K+G LI L+ A + PV + GD+P AF HT
Sbjct: 568 --WPQTVRAKIGSTLISFLIHVAKVSVEGTDPVTKEKVYGDAP-----AFAHTYVYHN-- 618
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYV 433
G + G+I+ + L G ++ +PMLV P W+G+ GG+ + S +
Sbjct: 619 ---GSKLGIIKIHKALINRL--NGERLLASVQPQLLPMLVKPRPWKGWKSGGYLYTQSIL 673
Query: 434 MRTHGARQQ 442
+R+ + +Q
Sbjct: 674 VRSRDSPEQ 682
>gi|255719121|ref|XP_002555841.1| KLTH0G18744p [Lachancea thermotolerans]
gi|238937225|emb|CAR25404.1| KLTH0G18744p [Lachancea thermotolerans CBS 6340]
Length = 1289
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 134/333 (40%), Gaps = 62/333 (18%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG---WF--------EPLRD 192
RQ ++E A + A + ++ D E K +L K L + WF E +R
Sbjct: 353 RQHQLENRATDAAKERWRH---DFEEAKSRGDLSIQKKLNIKLWEWFNLMLPLVKEEVRR 409
Query: 193 AIAKDQATAQD----------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GE 240
A TAQD Y PY + + M VIT+ +L+ L T
Sbjct: 410 CAAVANKTAQDTSLSPQEKKQNKARQEYGPYLTLVDPEKMCVITILELLKLNSTGGIIEG 469
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK 300
+R +A +G+AIE E R + K + + D K E + + +
Sbjct: 470 MRTARAVISVGKAIEMEFRAEMLLK--------------NESHVFKDVNKKSHEFKLMVQ 515
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDS 359
R + + K+++ + + W Q+A K+G LI +L+ A ++ VD + +
Sbjct: 516 RARATFRSIKIEESKVL---------WPQEARAKIGSILISMLIHVAKVKVEGVDPVTNE 566
Query: 360 P-PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVP 414
PAF H + G + GV++ + L G ++ +PMLV
Sbjct: 567 KIKGEAPAFSHGYQYHN-----GSKLGVLKIHRSLIHQL--NGERLVAAVQPQLLPMLVK 619
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
P W +N GG+++ S ++R+ + +Q +K
Sbjct: 620 PRAWNSWNSGGYYYTQSTLIRSKDSPEQVAYLK 652
>gi|254583510|ref|XP_002497323.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
gi|238940216|emb|CAR28390.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
Length = 1311
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 58/292 (19%)
Query: 176 LPYVKS-------LFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMH 228
LP VK +F G+ ++A +D A+ + + Y PY + + + M VIT+
Sbjct: 420 LPLVKEEVKLCSQVFDGYANEKKNASKED---AKQERARLDYGPYLSLVDPEKMCVITIL 476
Query: 229 KLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286
+L+ L T +R +A +G+AIE E R + KS +
Sbjct: 477 ELLKLNSTGGIIEGMRTARAVISVGKAIEMEFRSEQLLKSESQA--------------FR 522
Query: 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMET 346
D K E +K +R S + K+++ + + W Q A K+G LI +L+
Sbjct: 523 DLGKNSHELKKYLQRAKSTFRSMKIEENKIM---------WPQAARAKIGSILISMLIHV 573
Query: 347 AYIQ----PPVDQ---LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEK 399
+ ++ PV + G++P AF H + G + GV++ + L
Sbjct: 574 SKVEVEGVDPVTKQKVYGEAP-----AFAHGYQYHN-----GSKLGVLKIHRSLVHQL-- 621
Query: 400 TGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
G ++ +PMLV P W+ + GG+++ S ++R+ + +Q +K
Sbjct: 622 NGERLVASVQPQLLPMLVKPRPWKNWKSGGYYYTQSTLIRSKDSPEQIAYLK 673
>gi|393232267|gb|EJD39851.1| DNA/RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1218
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W Q VK+G L+ LM A I+ PV G+ + + AF HT E +G+
Sbjct: 425 WSQITRVKLGAFLVDQLMAVAKIERTRTHPV--TGEKLTEEQAAFTHTY-----EYQRGQ 477
Query: 383 RYGVIECDPLVRKGL-EKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
+ GVI+ +PLV + L E R ++ P ++PM+V P W ++ GG+ F + VMR ++
Sbjct: 478 KLGVIKLNPLVTECLAEAPVRDLVHPRHLPMVVKPKPWIDHDNGGYLFSRASVMRIKDSQ 537
Query: 441 QQ 442
+Q
Sbjct: 538 EQ 539
>gi|367011305|ref|XP_003680153.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
gi|359747812|emb|CCE90942.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
Length = 1321
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/451 (21%), Positives = 183/451 (40%), Gaps = 71/451 (15%)
Query: 30 KITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF--TQSIYPFGVLTSRSYASAAE 87
K+T+++T + LLG + Q+ N+ Q +F +++ S +
Sbjct: 306 KLTAVDTLGMRVVRHTLLGL---NLNEQQRQNIAQFHFKADENLLNLDQKKSIDFFEVYR 362
Query: 88 AIASESELSGSEEVQELIDQFNEKGVSILDS-SSMLDKQPKKKGTGMGTAKYYMLKRRQI 146
++ S++E S E ++ +DQFN++ L+S ++ K+ K A+ + +++
Sbjct: 363 SLKSDAERS---EFEKSLDQFNQERQRALESRATDAAKERWKHDFEEARARGDISIEKRL 419
Query: 147 KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK 206
++ W A C + ++ P + L K T QD
Sbjct: 420 NVKLWKWYNAMLPLLKEEVKFCSEVMSGKPPSRR---------LSSGEIKQNKTRQD--- 467
Query: 207 HMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFF 264
Y Y + + + M VIT+ +L+ L T +R +A +G+AIE E R +
Sbjct: 468 ---YGAYLSLVDPEKMCVITILELLKLNSTGGVIEGMRTARAVIAVGKAIEMEFRSEQLL 524
Query: 265 KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDS 324
KS + + D + E +K +R + + K+++ + +
Sbjct: 525 KSELQ--------------IFKDVNRKSHEFKKYVQRAKNSFRSIKIEESKVV------- 563
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHTLKSFTKEA 378
W Q A K+G +I +L+ A VD G P + PAF H +
Sbjct: 564 --WPQAARAKIGSIMISMLIHVA----KVDLEGIDPVTKQKVHGEAPAFSHGYQYHN--- 614
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + L G ++ +PMLV P W+ +N GG+++ S ++
Sbjct: 615 --GSKLGVLKIHRSLIHQL--NGERLVASVQPQLLPMLVKPRPWKSWNSGGYYYTQSSLI 670
Query: 435 RTHGARQQRETIKMTPRS-QLEPVFQVSRVL 464
R+ + +Q +K + ++ V+Q VL
Sbjct: 671 RSKDSPEQMAYLKAVSNAGAIDTVYQGLNVL 701
>gi|392587510|gb|EIW76844.1| DNA/RNA polymerase [Coniophora puteana RWD-64-598 SS2]
Length = 1215
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ-PPVDQ-LGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
W Q V++G L+ LM+ A I+ VD+ G+ + +PAF H E ++G++
Sbjct: 422 WTQQLRVRIGGILVDCLMDVATIERQAVDKRTGEKISEQQPAFYHAY-----EYVRGQKL 476
Query: 385 GVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
GVI +P V + L K G + ++PMLV P W +GG+ + S MR + +Q
Sbjct: 477 GVIRINPFVAEHLAKDGMQGTLHPRHLPMLVQPKPWVNAEQGGYIYSKSSAMRYKDSIEQ 536
Query: 443 RETIK 447
++ ++
Sbjct: 537 QKYLQ 541
>gi|328350537|emb|CCA36937.1| DNA-directed RNA polymerase,mitochondrial [Komagataella pastoris
CBS 7435]
Length = 1329
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFK 265
+ YA Y + D M+ +T+ +L+ ++ T N +R +A +G+A+E E R +
Sbjct: 458 LEYANYLILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLL- 516
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHV 322
+K+ + N + +K ++ K+ VT+ K + LQQ R +
Sbjct: 517 -SKEIDVFKNF-------------RNMKNSKEFKRLVTTGSKNTFTKLLQQSRS---ASI 559
Query: 323 DSK------PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHT 370
D++ W + K+G LI LL+++A I D G P PA H
Sbjct: 560 DTELEETLFNWPNEIKAKIGSVLISLLLQSAKI----DVQGKDPITNEEVHGQVPAIFHQ 615
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFF 428
+ G + G+++ L K + Y+PMLV P W +N GG+++
Sbjct: 616 Y-----QYANGNKIGILKFHHDFTSKLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYY 670
Query: 429 LPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYS---SIFYDLFNLYRLIIN 481
+ ++RT + +Q +K + + ++ V+Q VL + +I ++FN+ + N
Sbjct: 671 TETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNTPWTINSEIFNVISEVWN 727
>gi|254566053|ref|XP_002490137.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
gi|238029933|emb|CAY67856.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
Length = 1321
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 50/297 (16%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFK 265
+ YA Y + D M+ +T+ +L+ ++ T N +R +A +G+A+E E R +
Sbjct: 450 LEYANYLILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLL- 508
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK---QKLQQVRGIVKGHV 322
+K+ + N + +K ++ K+ VT+ K + LQQ R +
Sbjct: 509 -SKEIDVFKNF-------------RNMKNSKEFKRLVTTGSKNTFTKLLQQSRS---ASI 551
Query: 323 DSK------PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHT 370
D++ W + K+G LI LL+++A I D G P PA H
Sbjct: 552 DTELEETLFNWPNEIKAKIGSVLISLLLQSAKI----DVQGKDPITNEEVHGQVPAIFHQ 607
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFF 428
+ G + G+++ L K + Y+PMLV P W +N GG+++
Sbjct: 608 Y-----QYANGNKIGILKFHHDFTSKLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYY 662
Query: 429 LPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYS---SIFYDLFNLYRLIIN 481
+ ++RT + +Q +K + + ++ V+Q VL + +I ++FN+ + N
Sbjct: 663 TETSLIRTKDSPEQLAYVKAASENNTIDKVYQGLTVLGNTPWTINSEIFNVISEVWN 719
>gi|343427710|emb|CBQ71237.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 1551
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 38/243 (15%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ + L +A+IT+ +L + M+ G V + +A +G AIE E + K+
Sbjct: 625 PFLHLLSPAKLALITILEL--MRMSGNGGVSDGMKTTRALLAVGRAIEMEYHSEVVRKNP 682
Query: 268 KK-KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR-VTSLIKKQKLQ--QVRGIVKGHVD 323
K NA Q L+KR + L +++++ Q++ +G +
Sbjct: 683 KIFSNAH-------------------AAQATLRKRGLIDLAARREIKAWQMQQEEEGVLS 723
Query: 324 SKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
S P W Q +VG L+Q LM A + + D+ G + +PAF T + L G
Sbjct: 724 SIPRWTQPVRARVGSYLVQHLMHVATVNRKATDRDGVLWEEDQPAFYSTY-----QYLGG 778
Query: 382 RRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
++ GVI+ + ++ K L+K + + P ++PMLVPP W ++ GG++ + MR +
Sbjct: 779 KKLGVIKLNEVIAKRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDS 838
Query: 440 RQQ 442
+Q
Sbjct: 839 AEQ 841
>gi|320582765|gb|EFW96982.1| mitochondrial RNA polymerase [Ogataea parapolymorpha DL-1]
Length = 1327
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 112/263 (42%), Gaps = 33/263 (12%)
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAA 247
L D + D+ +K KH PY L A+ T+ +++ +++ A V +
Sbjct: 452 LEDTSSFDKERYSEKLKH---GPYLTLLKPSKSAITTILEVIKTCVSSDLAHGAPVSKVV 508
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE--KLIKEQEKLKKRVTSL 305
IG A+E E + Q A D ++ + + PE K ++ + + L
Sbjct: 509 MAIGRAMELEFKAQRLL-------AADIDVNKNFRAIRKTPEFKKFVR-----GAKASQL 556
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPP 361
I++ + ++ + W D+ +VG ++ LL++ A + P+ GD+
Sbjct: 557 IREAE-KRAESSAGQSIAFVSWDTDSRCRVGSVMLSLLLQVAKVDVEGTDPI--TGDTKT 613
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
+ PAF HT + G + GVI+ + + G E+ + +MPM+ P W
Sbjct: 614 ALAPAFYHTY-----DYQNGSKVGVIKLNTKFASKLGTERVDNTLQPHFMPMIAKPRPWT 668
Query: 420 GYNRGGHFFLPSYVMRTHGARQQ 442
+N GG++ S V++ + +Q
Sbjct: 669 THNDGGYYLKKSAVLKAKNSPEQ 691
>gi|50306641|ref|XP_453294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642428|emb|CAH00390.1| KLLA0D05247p [Kluyveromyces lactis]
Length = 1263
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 57/311 (18%)
Query: 191 RDAIAKDQ-ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQ 245
+D + K+Q A + + Y PY + + M VIT+ +L+ L ++G V R +
Sbjct: 390 QDLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKL--QSSGGVTEGMRTAR 447
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
A +G +IE E R SE L K+ KE K
Sbjct: 448 AVLSVGRSIEMEFR---------------------SEKLLRSENKMFKEVNKRSHEFKMF 486
Query: 306 IKKQKLQQVRGIVKGHVDSK--PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQ---L 356
++ K + HV+ W D K+G LI +L+ + + P+ + +
Sbjct: 487 VQNAKT----ALRNMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVV 542
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD-PLVRK-GLEKTGRHMIIPYMPMLVP 414
G++P AF HT + + G + G+++ LV + E+ ++ ++PMLV
Sbjct: 543 GEAP-----AFCHTFQYRS-----GTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVR 592
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYS---SIFY 470
P W +N GG+ + S ++R+ + +Q IK ++ + ++ V++ VL + +I
Sbjct: 593 PRPWTNWNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINE 652
Query: 471 DLFNLYRLIIN 481
LFN+ + N
Sbjct: 653 KLFNIVSEVWN 663
>gi|388858367|emb|CCF48096.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Ustilago hordei]
Length = 1536
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 46/247 (18%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGEV----RVVQAACQIGEAIENEARIQSFFKST 267
P+ +P +A+IT+ ++ + M+ G V + +A +G AIE
Sbjct: 600 PFLRLVPVSKLALITILEI--MRMSGNGGVADGMKTTRALLAVGRAIE------------ 645
Query: 268 KKKNATDNNLEGDSEPLTNDP---EKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK----- 319
+E S+ + +P + Q L+KR LI ++R K
Sbjct: 646 ---------MEYHSDVVRKNPRIFQNAHTAQTVLRKR--GLINLAARNEIRAWQKQQEEE 694
Query: 320 GHVDSKP-WGQDALVKVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
G + S P W Q +VG L+Q LM A + + D+ G + +PAF T +
Sbjct: 695 GVLSSIPKWTQAVRARVGSYLVQHLMHVANVSRKATDRDGVLWEEDQPAFYSTY-----Q 749
Query: 378 ALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
L G++ GVI+ + ++ + L+K + + P ++PMLVPP W ++ GG++ + MR
Sbjct: 750 YLGGKKLGVIKLNEVIAQRLDKDSMQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMR 809
Query: 436 THGARQQ 442
+ +Q
Sbjct: 810 YKDSAEQ 816
>gi|338826814|ref|YP_004678728.1| RNA polymerase [Enterobacteria phage K30]
gi|335335277|gb|AEH41021.1| RNA polymerase [Enterobacteria phage K30]
Length = 906
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 139/338 (41%), Gaps = 75/338 (22%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQ-KLAPNLPYVKSLFLGWFEPLR---DAIAK 196
L R Q+ +E EA+E + + +L + + A N+ K L L L D +
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 197 DQATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTN 237
+QA A+ K K Y P + + +++ +A++T+ ++G L T+
Sbjct: 91 EQANARGK-KPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTL-TD 148
Query: 238 AGEVRVVQAACQIGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A + + Q + Q+G+A+E+EA RI+ S KKN D
Sbjct: 149 ASKATIQQVSSQLGKALEDEARFGRIREQEASYFKKNVAD-------------------- 188
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAY 348
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T
Sbjct: 189 --QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGL 246
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
++ +++ D D+ + L E L R + P+ Y
Sbjct: 247 VEMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------Y 291
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQR 443
P +VPP W GG++ + P ++RTH + R
Sbjct: 292 QPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKKALR 329
>gi|365760960|gb|EHN02641.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1357
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 40/249 (16%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 500 LDYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 559
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 560 SESQT--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 597
Query: 326 PWGQDALVKVGCRLIQLLMETA--YIQPPVDQLGDSPPDIR-PAFVHTLKSFTKEALKGR 382
W Q+ K+G LI +L+ A ++Q VD + + PAF H + G
Sbjct: 598 -WPQNIRAKIGSVLISMLIHVAKVFVQG-VDPITKAKVHGEAPAFAHGYQYHN-----GS 650
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ GV++ + L G +I +PMLV P W + GG+ + S ++RT
Sbjct: 651 KLGVLKIHKTLIHQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKD 708
Query: 439 ARQQRETIK 447
+ +Q +K
Sbjct: 709 SPEQVAYLK 717
>gi|340960508|gb|EGS21689.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1394
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 181/444 (40%), Gaps = 59/444 (13%)
Query: 38 TLLDSSCPLLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIAS----ES 93
+LL SS G + ++L S L Q + T+++ VLT A+ AE S +
Sbjct: 224 SLLTSS----GAKLKTYLERYMSVLPQDSATEALDLGDVLTDDDLAAIAENCPSLSLSQE 279
Query: 94 ELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAK-----YYML-- 141
L+ +E EK + +S S P+ +KGTG+ K +Y L
Sbjct: 280 VLAPAETEDAATTTIAEKFAADRESQSAPKSLPEVLATPQKGTGLEALKSTLALFYELPP 339
Query: 142 ----------KRR--QIKIETEAWEQAAKEYQDLLADMCEQKLAPNL--PYVKSLFLGWF 187
+RR Q ++E + E A +++++ + L P + P + S W
Sbjct: 340 GADVAALPLEQRREFQSRLERDVLEAALQKWREDNESLASMGLNPQISAPSLSSKLYQWH 399
Query: 188 EPLRDAIAKDQATAQ----------DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTN 237
+ L IA++QA + + Y P A +A T+ ++ LL +
Sbjct: 400 QALERRIAEEQAKVEASENVPKKSAEDLDRCLYGPLLLQGSATRLAAATIISILSLLSLH 459
Query: 238 AGEVRVVQ--AACQIGEAIENEARIQSFFKSTK-KKNATDNNLEGDSEPLTNDPEKLIKE 294
+ V A Q+ + E + R Q K+ K K+ T+ + +K
Sbjct: 460 GADKGVAASLAVQQVAKVAEEDIRFQIAEKTKKLPKHQTELQKRKARRLIRVKGNGSLKT 519
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K + V +L L + ++ W KVG L+ +META I D
Sbjct: 520 TDKKQLGVATL----PLATTGEMAPAITENTRWPTAIRAKVGALLLTAMMETAKIMVVRD 575
Query: 355 Q--LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIPYMPM 411
+ ++PAF H + + KG++ G+I+ +P + + L++ R ++ ++PM
Sbjct: 576 HPVTKEKVHQLQPAFSHAM-----QLRKGKKVGIIQANPELVEILKREPRAELLARHLPM 630
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMR 435
LV P W +++GG S ++R
Sbjct: 631 LVEPEPWTKFDKGGFLECQSPLIR 654
>gi|172490|gb|AAA35007.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae]
Length = 1351
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|190406539|gb|EDV09806.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae RM11-1a]
Length = 1351
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|259146153|emb|CAY79412.1| Rpo41p [Saccharomyces cerevisiae EC1118]
Length = 1351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|151940727|gb|EDN59114.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae YJM789]
Length = 1351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|365765907|gb|EHN07411.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|256268895|gb|EEU04244.1| Rpo41p [Saccharomyces cerevisiae JAY291]
Length = 1351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|14318482|ref|NP_116617.1| Rpo41p [Saccharomyces cerevisiae S288c]
gi|308153492|sp|P13433.2|RPOM_YEAST RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|836718|dbj|BAA09203.1| mithochondrial DNA-directed RNA polymerase [Saccharomyces
cerevisiae]
gi|285811859|tpg|DAA12404.1| TPA: Rpo41p [Saccharomyces cerevisiae S288c]
gi|349577881|dbj|GAA23048.1| K7_Rpo41p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299635|gb|EIW10728.1| Rpo41p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1589360|prf||2210408E RNA polymerase
Length = 1351
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>gi|281416282|ref|YP_003347522.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
gi|262410401|gb|ACY66666.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
Length = 906
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 139/338 (41%), Gaps = 75/338 (22%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQ-KLAPNLPYVKSLFLGWFEPLR---DAIAK 196
L R Q+ +E EA+E + + +L + + A N+ K L L L D +
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 197 DQATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTN 237
+QA A+ K K Y P + + +++ +A++T+ ++G L T+
Sbjct: 91 EQANARGK-KPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTL-TD 148
Query: 238 AGEVRVVQAACQIGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
A + + Q + Q+G+A+E+EA RI+ + KKN D
Sbjct: 149 ASKATIQQVSSQLGKALEDEARFGRIREQEATYFKKNVAD-------------------- 188
Query: 295 QEKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAY 348
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T
Sbjct: 189 --QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGL 246
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY 408
++ +++ D D+ + L E L R + P+ Y
Sbjct: 247 VEMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------Y 291
Query: 409 MPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQR 443
P +VPP W GG++ + P ++RTH + R
Sbjct: 292 QPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKKALR 329
>gi|207345730|gb|EDZ72453.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 671
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 116/285 (40%), Gaps = 48/285 (16%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ ++ + + Y PY + M VIT+ +L+ L
Sbjct: 341 LPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 400
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293
T +R +A +G+AIE E R + KS + D K
Sbjct: 401 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQA--------------FRDVNKKSP 446
Query: 294 EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ--- 350
E +KL + S+ + +++Q + + W Q ++G LI +L++ A +
Sbjct: 447 EFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIGSVLISMLIQVAKVSVQG 497
Query: 351 -PPVDQL---GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII 406
PV + G++P AF H + G + GV++ + + L G +I
Sbjct: 498 VDPVTKAKVHGEAP-----AFAHGYQYHN-----GSKLGVLKIHKTLIRQL--NGERLIA 545
Query: 407 PY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
+PMLV P W + GG+ + S ++RT + +Q +K
Sbjct: 546 SVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLK 590
>gi|401625948|gb|EJS43925.1| rpo41p [Saccharomyces arboricola H-6]
Length = 1351
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 38/248 (15%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQT--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPPDIR-PAFVHTLKSFTKEALKGRR 383
W Q+ ++G LI +L+ A + VD + + PAF H + G +
Sbjct: 592 -WPQNIRAQIGSVLISMLIHVAKVSVQGVDPITKAKVHGEAPAFAHGYQYHN-----GSK 645
Query: 384 YGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
GV++ + L G +I +PMLV P +W + GG+ + S ++RT +
Sbjct: 646 LGVLKIHKTLIHQL--NGERLIASVQPQLLPMLVEPKSWINWRSGGYHYTQSTLLRTKDS 703
Query: 440 RQQRETIK 447
+Q +K
Sbjct: 704 PEQVAYLK 711
>gi|344304552|gb|EGW34784.1| hypothetical protein SPAPADRAFT_47865 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 88/397 (22%), Positives = 165/397 (41%), Gaps = 73/397 (18%)
Query: 100 EVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAK------YYMLKRRQIKIETEAW 153
E QE DQFN + LD+Q + + G+ AK Y K+R + T
Sbjct: 353 ETQEQRDQFNHALANF-----NLDRQKQMEIRGVEGAKEKWKHEYEETKKRDSIMST--- 404
Query: 154 EQAAKEYQDLLADMCE--QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYA 211
++L A + E QKL P L + L L D A +Q ++++K + YA
Sbjct: 405 -------KNLNAQLYEWYQKLVPLLQKERQECLD----LIDDKATNQKSSENK-ERAVYA 452
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
P+F + + A+ T+ +++ L T + +R + A +G+A+E + Q K K
Sbjct: 453 PFFVKIDPEKAAMTTILEVMKLQSTGGISNGMRALTALQSVGKALEYDYITQKLSKKDLK 512
Query: 270 KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK-PWG 328
+ T K + + L+ L VR +G + W
Sbjct: 513 RTQTS------------------------KHKGSRLL----LNLVRNAAEGDPNEDFGWS 544
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIE 388
QD +++G + LME A ++ + + AF H++ + + G+R G I+
Sbjct: 545 QDISIRLGAVFVSFLMEVAKVRVSRHTVETE----QSAFFHSI-----QYIGGQRIGAIK 595
Query: 389 CDPLVRKGLEKTGRHMII--PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
+ K + ++ + +MPM V P +W GY G P ++R + + +
Sbjct: 596 LHSDLVKSINRSSLDSCVQPQHMPMPVKPKDWDGYYGRGQVMSP--LVRVRDSPETAAYV 653
Query: 447 KMTPRS-QLEPVFQVSRVLYSSIFYDLFNLYRLIINF 482
K R+ L+ V+ VL ++ + +++++I ++
Sbjct: 654 KTAARNGNLDQVYAGLNVLGNTAWTVNKDIFKVISHY 690
>gi|402220117|gb|EJU00189.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 988
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 143/340 (42%), Gaps = 42/340 (12%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAP-NLPY--VKSLFLGWFEPLRDAIAKDQAT 200
RQ +E A+ AA+ ++ +M +A N + +K W++ L++ + + T
Sbjct: 22 RQRLMEESAYMVAAQRWRHQAEEMTHHNVAGWNTQHMKLKKWMWNWYQALKERLDNEIPT 81
Query: 201 AQDKWKHM---------TYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIG 251
+++ K P+ L + MA +T+ +L+ ++ G VR + A +G
Sbjct: 82 LEEEEKLAQRRKPTDGDAIGPFLRLLSTEKMATMTISELLRYGTSDGG-VRTARTAITLG 140
Query: 252 EAIENEARIQ-SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQK 310
+E E + + + ++ + EG L I++Q + + T I
Sbjct: 141 RVVEQEYNAEVALAQRSRGPDPVVLTSEGSLTELA-----AIRQQARDSEDFTMAIPPDW 195
Query: 311 LQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHT 370
Q +RG V G + +A++ V + I+P G+ + +PAF H
Sbjct: 196 TQVIRGRVGGFL------LNAVIDVAT------ITRRGIRPST---GEEVSEEQPAFAHC 240
Query: 371 LKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFF 428
E L GR+ G+I+ +P + + L E + +PML+PP W RG + +
Sbjct: 241 Y-----EFLHGRKIGLIKFNPELTEQLSSEPIKDALHPRQLPMLIPPRPWIDVERGAYMY 295
Query: 429 LPSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSS 467
+ VMR + +Q ++ + LE ++ VL S+
Sbjct: 296 SRTSVMRYKDSLEQSSFLRSASSAGHLESMYAALDVLGST 335
>gi|366991923|ref|XP_003675727.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
gi|342301592|emb|CCC69362.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
Length = 1326
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 46/258 (17%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTK 268
APY + + M VI + +L+ L T +R +A +G+AIE E R + KS
Sbjct: 475 APYLLLVNPEKMCVIAILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKSES 534
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWG 328
+ + K E +KL +R + +++Q + + W
Sbjct: 535 N--------------IFKEVNKKSPEFKKLVQRARQSFRSNQVEQSKIV---------WP 571
Query: 329 QDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR------PAFVHTLKSFTKEALKGR 382
Q K+G LI L+ A VD G P + PAF H + KG
Sbjct: 572 QAIRAKIGSTLISTLIHVA----KVDVKGFDPVTKQEVYGKAPAFSHGY-----QYCKGS 622
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ GVI+ + L G +I +PMLV P WR + GG+F+ S ++R+
Sbjct: 623 KLGVIKIHRSLINQL--NGERLIASVQPQLLPMLVKPRPWRNWRSGGYFYSQSTLIRSKE 680
Query: 439 ARQQRETIKMTPRSQLEP 456
+ +Q +K + + P
Sbjct: 681 SPEQLAYLKAVSDADVIP 698
>gi|328769272|gb|EGF79316.1| hypothetical protein BATDEDRAFT_35464 [Batrachochytrium
dendrobatidis JAM81]
Length = 1404
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQ---PPVDQLGDSPPDIRPAFVH-TLKSFTKEALKGR 382
WG++A VK+G L+ LL++ I P ++ G PAF H L S+ G+
Sbjct: 598 WGEEAKVKIGTFLLHLLVQAGKIAVQVPDPNKPGHKMSMDVPAFEHKVLSSY------GK 651
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
YG I V + +E ++ ++PMLV P W NRGG+ S ++R +
Sbjct: 652 TYGYIIRHAAVMEMMENGCASVLPLHLPMLVQPRPWLSCNRGGYLQHGSQLVRILNNPEH 711
Query: 443 RETIKMTPRSQLEPV 457
RE +K + P+
Sbjct: 712 REYLKAADEANHLPL 726
>gi|440637074|gb|ELR06993.1| hypothetical protein GMDG_02315 [Geomyces destructans 20631-21]
Length = 1438
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 147/352 (41%), Gaps = 47/352 (13%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRD-------A 193
RQIK+E ++ A ++ A + + L +L KSL W E L +
Sbjct: 362 RQIKLEEDSIISAVDRWRKESASLSKMGLDTSL-QTKSLGARMWKWQEALEQRLNQELQS 420
Query: 194 IAKDQATAQDKWKHM-----TYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQA 246
I K +AT + + + Y P+ LP D +A +T+ + L ++ + + +
Sbjct: 421 IDKAEATPEKEKSQLDVERCIYGPFLRYLPTDKLAAVTILTSMQCLSSHGTDKGMPLASV 480
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG +E+E+ ++ +T K+ N + S ++IK + ++ SL
Sbjct: 481 IMSIGANLEDESITETIRNNTTKQGWQQLN-KSASAGKGLGLARVIKNKRTRQQLTDSLA 539
Query: 307 KKQKLQQVRGIVKGHVD-----SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP 361
K VRG D + W KVG L+ L++TA + PV
Sbjct: 540 K-----LVRGDSAAKHDLSDQWNTEWSATIKAKVGSYLLSALIDTAKV--PVTMENTKTQ 592
Query: 362 D----IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH-MIIPYMPMLVPPL 416
+ I+PAF HT + G++ G+I + + L++ H ++ ++PM+ P
Sbjct: 593 ELLTQIQPAFSHT-----HQYKIGKKTGMILANRALVASLKREPVHSLLAKHLPMVAEPE 647
Query: 417 NWRGYNRGGHFFLPSYVMRTHGA----RQQRETIKMTPRSQLEPVFQVSRVL 464
W +N+GG P+ +R G RQ +E R +E +F+ VL
Sbjct: 648 PWSEFNQGGFISHPAKAVRIKGGDKNQRQYQEA--AIRRGDMEQMFKGLDVL 697
>gi|430811134|emb|CCJ31388.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1054
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL-EKTGRHMIIP-YMPMLVP 414
GD+ PAF HT + KGR+ GVI+ + V K L + R I P +PMLV
Sbjct: 366 GDTISQKAPAFYHTY-----QYQKGRKLGVIKLNDQVMKQLGSQPLRGNIHPRLLPMLVE 420
Query: 415 PLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM-TPRSQLEPVFQVSRVLYSSIFYDLF 473
P W ++ GG++ S VMR+ + +Q + +K+ + R+ L+ +F+ VL S+ +
Sbjct: 421 PKPWISWDSGGYYLSKSTVMRSRDSIEQIQYLKIASERNNLKSIFEGLDVLGSTAWAINI 480
Query: 474 NLYRLIINFLMCS--FCGI 490
++ ++I F GI
Sbjct: 481 PVFNVVIEVWNSGLEFAGI 499
>gi|21425677|emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
Y++GG+ FLPSY+MRTHG+R+Q++ ++ P Q++ V++ L S+
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGST 47
>gi|89148148|gb|ABD62817.1| mitochondrial single-subunit RNA polymerase [Rosculus sp. ATCC
50888]
Length = 1285
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/391 (18%), Positives = 147/391 (37%), Gaps = 89/391 (22%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKD------- 197
Q+ +E + +A EY +L M + A +L ++ L WF+PL ++I K+
Sbjct: 109 QLNLEHTSITKAVDEYTELTEQMTKMGRASHLSPLQDHVLRWFKPLAESIEKEILDCRAK 168
Query: 198 -----------------------------QATAQDKWKHMT-------YAPYFNNLPADM 221
TAQ + + PY N L
Sbjct: 169 LAVLANNSGDGSSTNNDEDDNGDNEPTKGGNTAQQRQQLSAQLNDLKLILPYINQLKPTE 228
Query: 222 MAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEA-------------RIQSFFKSTK 268
+ I +H+ + ++ +RV+ + IG + EA R++ ++ K
Sbjct: 229 LGCIALHETLSRILNAPNGMRVIDLSISIGRVVNTEANFLQLRQDRANFQRLRRYYPGAK 288
Query: 269 K-----KNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG--- 320
+ A +N + +++ ++ +++ +++ + + QQ++ I
Sbjct: 289 LNEQVIRRAVNNQSKNNNDKDGDNNTSNNSNNQQMPNNMSTFNRYKDNQQLKSIGPNQPS 348
Query: 321 -------HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL--------GDSPPDIRP 365
+ ++ W KVG LI+ +++ + + Q P +
Sbjct: 349 DQYGYALNSENATWSDLVQAKVGSFLIKHMLQHHQLSKKLTQSLVHFTSVENQHQPRLPT 408
Query: 366 AFVHTLK-----SFTKEALK-GRRY-GVIECDPLVRKGLEKTGRH---MIIPYMPMLVPP 415
+ T++ +FT E G Y G I C VR L + + +PM++PP
Sbjct: 409 SANSTIQQIEVPAFTYEHRSVGNHYVGYITCHHDVRNVLNSAHTDVSTLAVRLLPMVIPP 468
Query: 416 LNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
WR GG+ +PS ++R+ G+R+Q + +
Sbjct: 469 RPWRSVRDGGYLSVPSSIIRSKGSRKQIDAV 499
>gi|385304971|gb|EIF48970.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 391
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 28/245 (11%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTN--AGEVRVVQAACQIGEAIENEARIQSFFK 265
M Y P+ + + +A+IT+ +++ +T+ A V V + + +++E E +
Sbjct: 1 MKYGPFIXLMKPEKVAIITILEVMKNCVTSDIARGVPVSKVVMSVSKSLELEYK------ 54
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
++K A+D + + + PE + K +++ +++ L+ ++
Sbjct: 55 -SEKVLASDVDXYXNFRAIRKTPEFKRFLRSKQAEKIIXAAERKSLRNXS--IETETSQL 111
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEAL 379
W D+ +VG LI +L++ A VD G P + PAF HT +
Sbjct: 112 LWDADSHCRVGSALISMLLQIA----KVDVEGVDPKTXEVKKALAPAFYHTY-----DFQ 162
Query: 380 KGRRYGVIECDPLV--RKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + GVI+ + + G ++ + + Y+PM+ P W YN GG++ V+R+
Sbjct: 163 NGGKVGVIKVNQRFSSKLGKDRLDQSIQAQYLPMIARPRPWTTYNDGGYYLKRCLVLRSK 222
Query: 438 GARQQ 442
A +Q
Sbjct: 223 NAPEQ 227
>gi|9633997|ref|NP_052071.1| RNA polymerase [Yersinia phage phiYeO3-12]
gi|6598988|emb|CAB63592.1| RNA polymerase [Yersinia phage phiYeO3-12]
Length = 884
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 137/326 (42%), Gaps = 80/326 (24%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAREQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ AT + + K + YAP +L + A IT+ K++ +T+ + AA
Sbjct: 92 -------EYATKKGR-KPVAYAP-LQSLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
+G+AIE+EA RI+ KK+ +E+L KR +
Sbjct: 142 LGKAIEDEARFGRIRDLEAKHFKKHV----------------------EEQLNKRHGQVY 179
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V RG++ G S W ++ + VG RLI++L+E T ++ G++
Sbjct: 180 KKAFMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNA 238
Query: 360 PPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLN 417
D EAL+ + Y D L ++ G I P + P +VPP
Sbjct: 239 GSD-------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKP 278
Query: 418 WRGYNRGGHFF---LPSYVMRTHGAR 440
W GG++ P ++RTH +
Sbjct: 279 WVAITGGGYWANGRRPLALVRTHSKK 304
>gi|428185822|gb|EKX54674.1| RNA polymerase, single subunit, mitochondrial [Guillardia theta
CCMP2712]
Length = 1194
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 113/255 (44%), Gaps = 45/255 (17%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKK 270
P +LPA +AVIT+H+L+ L++ G+V V+AA +GE I+ E ++ K+ +
Sbjct: 457 GPILMSLPASKIAVITIHELLSSLLSGGGQVHFVRAARTVGEGIQAELGLEHVKKAKNRF 516
Query: 271 NATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-WGQ 329
+ +R+++L K ++++ ++ ++S+P W
Sbjct: 517 LLS-------------------------SRRLSALCKAHDVRKLNKLL-SRLESQPLWDA 550
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIE 388
VKVG +LIQ+LM +A + A H +++ + + KG R+ G +
Sbjct: 551 RMQVKVGAKLIQILMNSAKYKGSA------------AVTHVVQA--QMSNKGMRKKGFLA 596
Query: 389 CDPLVRKGLEKTGRHMIIP---YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
D + + LEK + +PM++ P W ++ G + + VMR Q E+
Sbjct: 597 LDQEILQDLEKQHDSVAAHNPLLLPMIIRPFPWMSFDVGCYIQARTKVMRIVDKGLQEES 656
Query: 446 IKMTPRSQLEPVFQV 460
+ S++ V
Sbjct: 657 CRNHDLSRIYAALDV 671
>gi|328851510|gb|EGG00664.1| hypothetical protein MELLADRAFT_50335 [Melampsora larici-populina
98AG31]
Length = 854
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 20/250 (8%)
Query: 215 NNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATD 274
N+L A + V + ++ +T+ + + +G++IENE QS KS + N
Sbjct: 24 NSLLAKVAVVEVIREMTNSTITDGA--KSIGLFIAMGKSIENEWYAQSV-KSIPELNKKL 80
Query: 275 NNLEGDSEPLTND-PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALV 333
+ S+P D P+ L K +L KR L V+G H D W +
Sbjct: 81 LHTIKSSQPEVGDVPKSLDKIVRQLWKREIGKYAGD-LAAVQG---EHTD---WTINQRA 133
Query: 334 KVGCRLIQLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPL 392
KVG L++ L++TA I + V G + +PAF T + F G+R GV + +
Sbjct: 134 KVGAMLMKGLLQTAKITRSQVMPDGSIYKEEQPAFYQTTQYF-----DGKRVGVTKLNEA 188
Query: 393 VRKGLEKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTP 450
V + L++ ++ + Y+PM+ PPL W G + + MRT + +Q +
Sbjct: 189 VAERLDRDPANVTLHPRYLPMISPPLPWTSPKNGAYLVHAAPFMRTKDSPEQHLHVMEAH 248
Query: 451 R-SQLEPVFQ 459
R + L+ +FQ
Sbjct: 249 RLNGLDDIFQ 258
>gi|194100420|ref|YP_002003793.1| gp1 [Klebsiella phage K11]
gi|193201359|gb|ACF15837.1| gp1 [Klebsiella phage K11]
Length = 906
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 73/337 (21%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLR---DAIAKD 197
L R Q+ +E EA+E + + +L + + K L L L D ++
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNAAAKPLVLTLHPQLTKRIDDWKEE 91
Query: 198 QATAQDKWKHMTYAPYFNNLPADM-------------------MAVITMHKLVGLLMTNA 238
QA A+ K K Y P + + + + +A++T+ ++G L T+A
Sbjct: 92 QANARGK-KPRAYYPIKHGVASKLAVSMGAEVLKEKRGVSSEAIALLTIKVVLGTL-TDA 149
Query: 239 GEVRVVQAACQIGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQ 295
+ + Q + Q+G+A+E+EA RI+ + KKN D
Sbjct: 150 SKATIQQVSSQLGKALEDEARFGRIREQEAAYFKKNVAD--------------------- 188
Query: 296 EKLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAYI 349
+L KRV + KK +Q V I KG + W D + VG +L++LL+E T +
Sbjct: 189 -QLDKRVGHVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLV 247
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYM 409
+ +++ D D+ + L E L R + P+ +
Sbjct: 248 EMTKNKMADGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------HQ 292
Query: 410 PMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQQR 443
P +VPP W GG++ + P ++RTH + R
Sbjct: 293 PCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKKALR 329
>gi|121716567|ref|XP_001275845.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
gi|119404002|gb|EAW14419.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
Length = 1375
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 147/366 (40%), Gaps = 73/366 (19%)
Query: 117 DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIET-----EAWEQAAKEYQDLLADMCE-- 169
+SSS + P++K A Y L++RQ++ ++ + W Q + Q + D+
Sbjct: 333 ESSSAIPTDPEQK------AVYDELRQRQLESDSIRSAMDRWRQEFDDRQKMGLDVTAGG 386
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT---AQDKWKHMTYAPYFNNLPADMMAVIT 226
+KL + S + + D +A+ +A +D+ Y Y +L D +A +T
Sbjct: 387 KKLGSVMNQWHSSLVARIKEELDLVAEAEANPIRTRDQKGRCEYGVYLRSLDTDTLAALT 446
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
+ ++ E ++V IG+ +++E ++ K K+ A + E L
Sbjct: 447 ILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK--KQAGADARRAKALKEML 504
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
+ Q+ + R +++ K + Q+ IV W + KVG L+ LL
Sbjct: 505 AQ------RRQKDGRTRWQAMVYKMQ-QEDSTIV--------WPPRVIAKVGAVLMSLLF 549
Query: 345 ETAYIQPPVDQLGDSPPD------IRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE 398
E + PV + P + ++PAF H + GRR G + P + K +
Sbjct: 550 EVG--KAPVTM--EDPENKKKMVTMQPAFQHAY-----QITWGRRTGYLHLHPAIVKIIA 600
Query: 399 KT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS 452
K GRH+ PM+ P W+G GG S ++RT TP
Sbjct: 601 KEPTADLLGRHL-----PMVCKPRPWKGSKDGGFLLYQSDLVRT------------TPGE 643
Query: 453 QLEPVF 458
L+P +
Sbjct: 644 SLQPTY 649
>gi|392864271|gb|EAS34905.2| mitochondrial DNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1385
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 178/470 (37%), Gaps = 78/470 (16%)
Query: 46 LLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELI 105
LLG RR + ++N + + VL+ +E +S+ + + +V EL
Sbjct: 244 LLGPRRDRSVRRYWKMAKEANVEEEVLGLPVLSEADLGLLSEICSSDFQGAALGDVSELP 303
Query: 106 DQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAKYYM-------------------L 141
D K ++ L P+ +KG G+ + K + +
Sbjct: 304 DSTPPKPSELVSPLEDLPAMPEVRATLQKGFGLTSLKETLSLFNQSKTTTEPEAVSSESI 363
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY----VKSLFLGWFEPLRDAIA-- 195
+ RQ+++E ++ A + ++ + ++ P+ P + + W + L +I
Sbjct: 364 RERQLRLEQDSVIAAMERWRK---ESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGE 420
Query: 196 ---------KDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEVRV 243
K + T++D YAP+ N++ D +A IT+ +G N G +R+
Sbjct: 421 IQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-IRL 478
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ +G A++ E ++ K D+ G L D LI K
Sbjct: 479 TRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGVRE 532
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLI +K ++ +K W K+G L +L + + V Q +I
Sbjct: 533 SLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEI 581
Query: 364 ----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
+PAF H + KG G + D +V + + ++ ++PM+ PP W
Sbjct: 582 TFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPW 636
Query: 419 RGYNRGGHFFLPSYVMRTHGARQ---QRETIKMTP-RSQLEPVFQVSRVL 464
Y GG P+ +MR QR+ ++ R L+ +F VL
Sbjct: 637 TSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVL 686
>gi|119191788|ref|XP_001246500.1| hypothetical protein CIMG_00271 [Coccidioides immitis RS]
Length = 1363
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 178/470 (37%), Gaps = 78/470 (16%)
Query: 46 LLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELI 105
LLG RR + ++N + + VL+ +E +S+ + + +V EL
Sbjct: 222 LLGPRRDRSVRRYWKMAKEANVEEEVLGLPVLSEADLGLLSEICSSDFQGAALGDVSELP 281
Query: 106 DQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAKYYM-------------------L 141
D K ++ L P+ +KG G+ + K + +
Sbjct: 282 DSTPPKPSELVSPLEDLPAMPEVRATLQKGFGLTSLKETLSLFNQSKTTTEPEAVSSESI 341
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY----VKSLFLGWFEPLRDAIA-- 195
+ RQ+++E ++ A + ++ + ++ P+ P + + W + L +I
Sbjct: 342 RERQLRLEQDSVIAAMERWRK---ESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGE 398
Query: 196 ---------KDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEVRV 243
K + T++D YAP+ N++ D +A IT+ +G N G +R+
Sbjct: 399 IQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-IRL 456
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ +G A++ E ++ K D+ G L D LI K
Sbjct: 457 TRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGVRE 510
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLI +K ++ +K W K+G L +L + + V Q +I
Sbjct: 511 SLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEI 559
Query: 364 ----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
+PAF H + KG G + D +V + + ++ ++PM+ PP W
Sbjct: 560 TFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPW 614
Query: 419 RGYNRGGHFFLPSYVMRTHGARQ---QRETIKMTP-RSQLEPVFQVSRVL 464
Y GG P+ +MR QR+ ++ R L+ +F VL
Sbjct: 615 TSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVL 664
>gi|303313347|ref|XP_003066685.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106347|gb|EER24540.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1385
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 178/470 (37%), Gaps = 78/470 (16%)
Query: 46 LLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELI 105
LLG RR + ++N + + VL+ +E +S+ + + +V EL
Sbjct: 244 LLGPRRDRSVRRYWKMAKEANVEEEVLGLPVLSEADLGLLSEICSSDFQGAALGDVSELP 303
Query: 106 DQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAKYYM-------------------L 141
D K ++ L P+ +KG G+ + K + +
Sbjct: 304 DSTPPKPSELVSPLEDLPAMPEVRATLQKGFGLTSLKETLSLFNQSKTTTEPEAVSSESI 363
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY----VKSLFLGWFEPLRDAIA-- 195
+ RQ+++E ++ A + ++ + ++ P+ P + + W + L +I
Sbjct: 364 RERQLRLEQDSVIAAMERWRK---ESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGE 420
Query: 196 ---------KDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEVRV 243
K + T++D YAP+ N++ D +A IT+ +G N G +R+
Sbjct: 421 IQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-IRL 478
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ +G A++ E ++ K D+ G L D LI K
Sbjct: 479 TRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGVRE 532
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLI +K ++ +K W K+G L +L + + V Q +I
Sbjct: 533 SLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEI 581
Query: 364 ----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
+PAF H + KG G + D +V + + ++ ++PM+ PP W
Sbjct: 582 TFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPW 636
Query: 419 RGYNRGGHFFLPSYVMRTHGARQ---QRETIKMTP-RSQLEPVFQVSRVL 464
Y GG P+ +MR QR+ ++ R L+ +F VL
Sbjct: 637 TSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVL 686
>gi|320036385|gb|EFW18324.1| DNA-directed RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 1385
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 96/470 (20%), Positives = 178/470 (37%), Gaps = 78/470 (16%)
Query: 46 LLGFRRTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELI 105
LLG RR + ++N + + VL+ +E +S+ + + +V EL
Sbjct: 244 LLGPRRDRSVRRYWKMAKEANVEEEVLGLPVLSEAELGLLSEICSSDFQGAALGDVSELP 303
Query: 106 DQFNEKGVSILDSSSMLDKQPK-----KKGTGMGTAKYYM-------------------L 141
D K ++ L P+ +KG G+ + K + +
Sbjct: 304 DSTPPKPSELVSPLEDLPAMPEVRATLQKGFGLTSLKETLSLFNQSKTTTEPEAVSSESI 363
Query: 142 KRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY----VKSLFLGWFEPLRDAIA-- 195
+ RQ+++E ++ A + ++ + ++ P+ P + + W + L +I
Sbjct: 364 RERQLRLEQDSVIAAMERWRK---ESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGE 420
Query: 196 ---------KDQATAQDKWKHMTYAPYFNNLPADMMAVITM---HKLVGLLMTNAGEVRV 243
K + T++D YAP+ N++ D +A IT+ +G N G +R+
Sbjct: 421 IQSILKAQEKKRKTSEDN-DRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKG-IRL 478
Query: 244 VQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ +G A++ E ++ K D+ G L D LI K
Sbjct: 479 TRLIMLLGRAVQEEYVTDRIQETPSKSAPLDS---GRRAKLVQD---LIPSNRGRKGVRE 532
Query: 304 SLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI 363
SLI +K ++ +K W K+G L +L + + V Q +I
Sbjct: 533 SLI--EKYNEIHEPIK-------WSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEI 581
Query: 364 ----RPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNW 418
+PAF H + KG G + D +V + + ++ ++PM+ PP W
Sbjct: 582 TFVKQPAFRHVY-----QLEKGHSVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPW 636
Query: 419 RGYNRGGHFFLPSYVMRTHGARQ---QRETIKMTP-RSQLEPVFQVSRVL 464
Y GG P+ +MR QR+ ++ R L+ +F VL
Sbjct: 637 TSYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVL 686
>gi|367044972|ref|XP_003652866.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
gi|347000128|gb|AEO66530.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
Length = 1408
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 72/301 (23%)
Query: 177 PYVKSLFLGWFEPLRDAIAKDQAT----------AQDKWKHMTYAPYFNNLPADMMAVIT 226
P + S W L IA +QA +Q+ Y P+ PA +A +T
Sbjct: 397 PSLNSRLYDWHRALEARIAAEQAKVDKSESAPKKSQEDLDRCLYGPHLLQAPAKRLAAVT 456
Query: 227 MHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKS----------TKKKNAT- 273
+ + +L + + + V Q+ + E + R Q KS +++NA
Sbjct: 457 ILSALSILAMHGADKGIPVSNMVQQVAKIAEEDIRSQILAKSLPYARLKLKHRRQQNARQ 516
Query: 274 -----DNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-- 326
+ +E EP +N+PE + V + K +S P
Sbjct: 517 LIRQRERKIE---EPPSNEPET-----------------GARTLSVNAVSKEIGESPPDR 556
Query: 327 ----WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR-------PAFVHTLKSFT 375
W K G L+ L+++A I + PD + PAF+HT+
Sbjct: 557 LEARWPTVIRAKFGAVLLGALIDSAKIV-----VNREHPDTKQMVTQSMPAFIHTV---- 607
Query: 376 KEALKGRRYGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
+ KGR+ GVI+ + + +++ R + ++PM+V P+ W +++GG PS ++
Sbjct: 608 -QLKKGRKVGVIQPNRALVDLMKREPRGEALARHLPMVVEPVPWSRFDKGGFIGSPSPLI 666
Query: 435 R 435
R
Sbjct: 667 R 667
>gi|403216073|emb|CCK70571.1| hypothetical protein KNAG_0E03120 [Kazachstania naganishii CBS
8797]
Length = 1276
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 65/362 (17%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSL---FLGWFEPLRDAIAKD--- 197
RQ +E A + A + ++ D + K +L KSL W+ + + K+
Sbjct: 347 RQRALELRATDAAKERWKH---DFEDAKQRGDLAIQKSLNAKLWKWYSGMLPILKKEIEL 403
Query: 198 ----QATAQDKWKHMT---YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAAC 248
QATA H T YAPY + + M VIT+ +++ L T +R +A
Sbjct: 404 CRQMQATAAKG--HSTRAEYAPYLTLVTPEKMCVITILEILKLNSTGGITEGMRTARAVI 461
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
+G+A+E E R + K+ + N + + + + E I+K
Sbjct: 462 SVGQAVEMEFRSEQLLKNESRMFKEVNKKSNTFKKIVRSAKSAFRAME---------IEK 512
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQ----PPVDQLGDSPPDIR 364
QKL W Q KVG L+ +L+ A + P+ + +
Sbjct: 513 QKLL--------------WPQAIRAKVGSILVSMLIRIADVTVEGTDPITK--EKVYGKT 556
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPY----MPMLVPPLNW 418
PAF H+ + G + G+++ + K L + G ++ +PMLV P W
Sbjct: 557 PAFSHSYQYHN-----GVKLGIVK----IHKSLINQLNGERLVASVQPQLLPMLVKPREW 607
Query: 419 RGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ-LEPVFQVSRVLYSSIFYDLFNLYR 477
+ + GG+F+ S ++R+ +Q ++ S ++ V+ VL ++ + N++
Sbjct: 608 KNWKSGGYFYSQSTLVRSRDCPEQLAYLEAASNSNAIDKVYDGLNVLGNTAWTVNRNIFN 667
Query: 478 LI 479
++
Sbjct: 668 VV 669
>gi|67901244|ref|XP_680878.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|40742605|gb|EAA61795.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|259483938|tpe|CBF79737.1| TPA: Putative DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q70TF3] [Aspergillus
nidulans FGSC A4]
Length = 1391
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 56/271 (20%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSF 263
+ + Y PY + + +A +T+ + L N + +++ A IG + E +Q
Sbjct: 424 ERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQRM 483
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGI-----V 318
+ KK+ + + + KLIK+ + ++ +++GI +
Sbjct: 484 VERRKKEMNSAHRV------------KLIKQ---------IFLGRKDRDKLKGINWKNAL 522
Query: 319 KGHVDSKP---WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR-------PAFV 368
K +P W KVG L+ LL + A + PV++ + R P F
Sbjct: 523 KSMEQEEPDIVWATAIKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQ 582
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHF 427
H+ + GRR G I +P + K L + ++ +PML P W+GY G +F
Sbjct: 583 HSY-----QITWGRRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYF 637
Query: 428 FLPSYVMRTHGARQQRETIKMTPRSQLEPVF 458
+ Q ++ TP L+P +
Sbjct: 638 Y------------HQNLFVRSTPGESLQPTY 656
>gi|410077803|ref|XP_003956483.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
gi|372463067|emb|CCF57348.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
Length = 1284
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 39/268 (14%)
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSF 263
K + YAPY + + M VI + +++ L T +R +A +G+AIE E R +
Sbjct: 424 KRLEYAPYLALVNPEKMCVIAILEILKLNSTGGIIEGMRTARALISVGKAIEMEFRSEQL 483
Query: 264 FKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
K + + D K E + ++ + K++Q + +
Sbjct: 484 LK--------------NESYIFKDVNKKSPEFKTYLRKAKKSFRSSKIEQAKIV------ 523
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQ-PPVDQLGDSPP-DIRPAFVHTLKSFTKEALKG 381
W Q KVG L+ +L+ A ++ +D + PAF H+ + G
Sbjct: 524 ---WPQSIRAKVGSILVSILIHVAKVEIEGIDPITHQKIFGTAPAFSHSYQYHN-----G 575
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
+ GVI + + L+ G ++ +PMLV P W + GG+++ S ++R+
Sbjct: 576 SKLGVIRIHKSLVQQLD--GERLMASVQPQLLPMLVEPRPWVNWKSGGYYYTQSTLVRSK 633
Query: 438 GARQQRETIKMTPRSQ-LEPVFQVSRVL 464
+ +Q ++ Q L+ V+ VL
Sbjct: 634 DSPEQIAYLEAASNVQALDKVYDGLNVL 661
>gi|367034009|ref|XP_003666287.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
gi|347013559|gb|AEO61042.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
Length = 1402
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 56/369 (15%)
Query: 96 SGSEEVQELIDQFNEKGV---SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQI--KIET 150
SG+ EV+E +KG+ S+ + S+L + P+ G+ A + +RR++ ++E
Sbjct: 317 SGTPEVRET----PQKGMGLKSLKTALSLLSELPE----GLDIASLPLSQRREVQARLER 368
Query: 151 EAWEQAAKEYQDLLADMCEQKLAPNL--PYVKSLFLGWFEPLRDAIAKDQAT-------- 200
+ + A +++ + L L P + S W + L + ++QA
Sbjct: 369 DCVDAAIARWREENEQLMSMGLNTQLSTPSLNSKLYDWHQALEARLIQEQAKVEASLSAP 428
Query: 201 --AQDKWKHMTYAPYFNNLPADMMAVIT-MHKLVGLLMTNAGE-VRVVQAACQIGEAIEN 256
+++ + Y P+ PA+ +A + + L L M A + + V Q+ + E
Sbjct: 429 RKSREDMERCVYGPHLLQSPANRLAAVAILSALSSLAMHGADKGIPVSNMVQQLAKIAEE 488
Query: 257 EARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRV-TSLIKKQKLQQVR 315
+ R Q+ K+ K S+P +K ++ +L T+ K
Sbjct: 489 DIRAQAIAKNLPK-----------SKPRK---QKSARQLMRLHDAAPTATTKSSPTATAS 534
Query: 316 GIVKGHVDSKP------WGQDALVKVGCRLIQLLMETAYI--QPPVDQLGDSPPDIRPAF 367
+ +S+P W K G ++ LM+TA I + + + ++PAF
Sbjct: 535 PASQPATNSEPSEFASRWPIAIKAKFGAVILGALMDTAKIVVEREHPETKEKVTQVQPAF 594
Query: 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGH 426
HT+ + KGRR GVI+ + + + +++ R + ++PM+V P W +++GG
Sbjct: 595 THTV-----QLKKGRRVGVIQPNRSLIELMKREPRGEALARHLPMVVEPEPWSKFDKGGF 649
Query: 427 FFLPSYVMR 435
PS ++R
Sbjct: 650 ITSPSPLVR 658
>gi|449295533|gb|EMC91554.1| hypothetical protein BAUCODRAFT_38669 [Baudoinia compniacensis UAMH
10762]
Length = 1478
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 46/242 (19%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAG--------EVRVVQAACQIGEAIENEARIQ 261
YAPY LP D +A T+ +V E+++ +G+ +E EA
Sbjct: 462 YAPYLELLPMDKVAANTILFVVSRFAGGKDRHTKKYEVEMKLSHLTTSLGKQLEAEADAS 521
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH 321
+ K E+ + K KR + K L+ +G
Sbjct: 522 RSVEQMK--------------------ERRQGGKIKASKRRQGMFAK-GLKHKKGANSTL 560
Query: 322 VDSKP-WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP------PDIRPAFVHTLKSF 374
V+S W DA VK+ LIQ L E+A Q PV + + P ++PAF+H +K
Sbjct: 561 VESDDKWPLDAKVKLCAMLIQKLKESA--QLPVTR--EHPRTKQKITQLQPAFLHRIKYV 616
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRGYNRGGHFFLPSYV 433
G++ G++ +P + LE +I MPM+V P W G++ GG+ + V
Sbjct: 617 L-----GKKVGIVAPNPALIDKLESEPMGSVIAKRMPMIVEPKPWTGWSVGGYIHYANDV 671
Query: 434 MR 435
+R
Sbjct: 672 LR 673
>gi|242092660|ref|XP_002436820.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
gi|241915043|gb|EER88187.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
Length = 115
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A++ L+ RQ+K ETEAWE+ +EY+++ + +++LA L KSLF+GWFE L + I
Sbjct: 11 AQHRRLRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETIT 70
Query: 196 KDQATAQDKWKHMTYAPYFNNLPA 219
D+ +WK + + +PA
Sbjct: 71 CDRHV--QRWKRVKHVYGLRQVPA 92
>gi|189427200|ref|YP_001949750.1| gp1 [Salmonella phage phiSG-JL2]
gi|189085853|gb|ACD75668.1| gp1 [Salmonella phage phiSG-JL2]
Length = 884
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 80/323 (24%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAREQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTARIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K + YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPVAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
+G+AIE+EA RI+ KK+ +E+L KR +
Sbjct: 142 LGKAIEDEARFGRIRDLEAKHFKKHV----------------------EEQLNKRHGQVY 179
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V RG++ G S W ++ + VG RLI++L+E T ++ G++
Sbjct: 180 KKAFMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNA 238
Query: 360 PPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLN 417
D EAL+ + Y D L ++ G I P + P +VPP
Sbjct: 239 GSD-------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKP 278
Query: 418 WRGYNRGGHFF---LPSYVMRTH 437
W GG++ P ++RTH
Sbjct: 279 WVAITGGGYWANGRRPLALVRTH 301
>gi|296806639|ref|XP_002844119.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
gi|238845421|gb|EEQ35083.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
Length = 1375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 36/261 (13%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTHIGRAVKDEYIIETTRQSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
+ T+N E L K + + R ++ H + +P
Sbjct: 503 VNEAETEN------------------EAYYLNKTFRQMKVYNSTGKFRSYMQKHTEGRPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR----PAFVHTLKSFTKEALK 380
W +K+G L +L TA I P ++R PAF H + K
Sbjct: 545 VHWPTSTEIKIGALLSSMLFSTAEI--PTSHKDPVTEEVRYVNEPAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ PP W +GG P V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSPPRPWVSNTQGGFLTQPVQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQ 459
Q + + R LE +++
Sbjct: 658 DAQNQYLQAASERGDLEELYK 678
>gi|398392013|ref|XP_003849466.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
gi|339469343|gb|EGP84442.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
Length = 1299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L+R +++ E W++A +E + Q + S+ W + L A+ ++
Sbjct: 255 LERTSVEVAVERWKKADEELRKKGISTAMQTKD-----MSSMMWQWHQQLLPALKQELEE 309
Query: 201 AQDKW--------KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG----------EVR 242
Q + +H+ Y P+ LP + +A T+ +V + G +V+
Sbjct: 310 VQKEMADPGREHDRHL-YGPFLELLPLEHIAATTI--MVAMSSIAHGKKDTSGQYETDVK 366
Query: 243 VVQAACQIGEAIENEARIQSFF----KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298
+ +G IE++ + + + KK + + + P P+ K
Sbjct: 367 LSHLVSALGNTIESDCKAEKAGSQSRRGAKKARSAGRLKKSAANPALEAPDADKTSASKG 426
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI-----QPPV 353
K + S K+ L ++ W K+G LI L+ETA + P
Sbjct: 427 KPKKPS--NKELLAELE-----------WSNPVKFKLGAMLISKLVETAKLACRREHPRT 473
Query: 354 DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD-PLVRKGLEKTGRHMIIPYMPML 412
++ + ++PA +H +K ++G+R G I + LV+K + +I MPM+
Sbjct: 474 KEMIEQ---MQPALLHQMK-----WIRGKRQGTIAPNVELVKKLSSEPIPALIAKRMPMV 525
Query: 413 VPPLNWRGYNRGGHFFLPSYVMR 435
V P W+G+ GG+ PS ++R
Sbjct: 526 VRPKPWKGWEDGGYLRFPSPILR 548
>gi|15505|emb|CAA24333.1| unnamed protein product [Enterobacteria phage T7]
Length = 883
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ + K T + + + +A IT+ + L T+A V A
Sbjct: 92 VK----------AKRGKRPTAFQFLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|350636444|gb|EHA24804.1| hypothetical protein ASPNIDRAFT_48810 [Aspergillus niger ATCC 1015]
Length = 1367
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAYQINW-----GRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRT-- 640
Query: 439 ARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 641 ----------TPGETLQPAY 650
>gi|216012|gb|AAA32569.1| RNA polymerase [Enterobacteria phage T7]
Length = 883
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|134082638|emb|CAK42532.1| unnamed protein product [Aspergillus niger]
Length = 1367
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAYQINW-----GRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRT-- 640
Query: 439 ARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 641 ----------TPGETLQPAY 650
>gi|9627432|ref|NP_041960.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|251784243|ref|YP_002998547.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253774277|ref|YP_003037108.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254287609|ref|YP_003053357.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|12643995|sp|P00573.2|RPOL_BPT7 RecName: Full=DNA-directed RNA polymerase
gi|2781155|pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781156|pdb|4RNP|B Chain B, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781157|pdb|4RNP|C Chain C, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|5107544|pdb|1CEZ|A Chain A, Crystal Structure Of A T7 Rna Polymerase-T7 Promoter
Complex
gi|7245970|pdb|1QLN|A Chain A, Structure Of A Transcribing T7 Rna Polymerase Initiation
Complex
gi|27065076|pdb|1H38|A Chain A, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065077|pdb|1H38|B Chain B, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065078|pdb|1H38|C Chain C, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065079|pdb|1H38|D Chain D, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065724|pdb|1MSW|D Chain D, Structural Basis For The Transition From Initiation To
Elongation Transcription In T7 Rna Polymerase
gi|46015618|pdb|1S0V|A Chain A, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015619|pdb|1S0V|B Chain B, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015620|pdb|1S0V|C Chain C, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015621|pdb|1S0V|D Chain D, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|47169080|pdb|1S76|D Chain D, T7 Rna Polymerase Alpha Beta Methylene Atp Elongation
Complex
gi|47169084|pdb|1S77|D Chain D, T7 Rnap Product Pyrophosphate Elongation Complex
gi|431189|emb|CAA24390.1| unnamed protein product [Enterobacteria phage T7]
gi|37956644|gb|AAP33914.1| gene 1 [Enterobacteria phage T7]
gi|45861229|gb|AAS78492.1| T7 RNA polymerase [Cloning vector pPRCG]
gi|45861242|gb|AAS78503.1| T7 RNA polymerase [Cloning vector pTCCR-Auto]
gi|71534851|gb|AAZ32820.1| protein 1 [Enterobacteria phage T7.1]
gi|125743113|gb|ABN54763.1| T7 RNA polymerase [Expression vector pR6K-lys-Gm]
gi|125743121|gb|ABN54770.1| T7 RNA polymerase [Expression vector pUC19-T7pol-lacI-lys]
gi|125743124|gb|ABN54772.1| T7 RNA polymerase [Expression vector pBT20-Dbla-T7pol]
gi|194021543|gb|ACF32352.1| T7 DNA-directed RNA polymerase [Enterobacteria phage DE3]
gi|226440714|gb|ACO57213.1| RNA polymerase [Enterobacteria phage T7]
gi|242376516|emb|CAQ31221.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253325321|gb|ACT29923.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976916|gb|ACT42586.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|265524972|gb|ACY75835.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|283825308|gb|ADB43112.1| T7 RNA polymerase [Expression vector pCAGGS-T7]
gi|299008115|gb|ADJ00046.1| T7 RNA polymerase [T7RNA polymerase vector pGemT7cat]
gi|299008117|gb|ADJ00047.1| T7 RNA polymerase [Mariner mini-transposon delivery vector
pMaT7cat]
Length = 883
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|317035455|ref|XP_001397108.2| DNA-dependent RNA polymerase family protein [Aspergillus niger CBS
513.88]
Length = 1640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 806 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAYQINW-----GRRA 860
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 861 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRT-- 913
Query: 439 ARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 914 ----------TPGETLQPAY 923
>gi|358373876|dbj|GAA90472.1| mitochondrial DNA-directed RNA polymerase [Aspergillus kawachii IFO
4308]
Length = 1367
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI--RPAFVHTLKSFTKEALKGRRY 384
W KVG L+ L E A +D P+I +PAF H + GRR
Sbjct: 533 WSARVKAKVGAALMSFLFEVAKAPVKIDNPETKKPEISMQPAFQHAYQINW-----GRRA 587
Query: 385 GVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
G I P + K + K GRH+ PML P W+G + GG+ S ++RT
Sbjct: 588 GFIHLHPEIVKIVTKEPTSDLLGRHL-----PMLSKPRPWKGVSDGGYHVYKSNLIRT-- 640
Query: 439 ARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 641 ----------TPGETLQPAY 650
>gi|387941914|gb|AFK13493.1| DNA-directed RNA polymerase [Yersinia phage YpsP-G]
Length = 903
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 120/321 (37%), Gaps = 76/321 (23%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 52 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 111
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 112 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 160
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 161 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 198
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 199 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 257
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 258 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 299
Query: 420 GYNRGGHFF---LPSYVMRTH 437
G GG++ P ++RTH
Sbjct: 300 GITGGGYWANGRRPLALVRTH 320
>gi|150261381|pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps.
gi|150261384|pdb|2PI5|A Chain A, T7 Rna Polymerase Complexed With A Phi10 Promoter
Length = 878
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 27 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 86
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 87 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 135
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 136 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 173
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 174 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 232
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 233 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 271
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 272 PWTGITGGGYWANGRRPLALVRTH 295
>gi|385663996|gb|AFI71020.1| T7* RNAP [Cloning vector SBa_000560]
Length = 885
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 34 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 93
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 94 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 142
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 143 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 180
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 181 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 239
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 240 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 278
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 279 PWTGITGGGYWANGRRPLALVRTH 302
>gi|3891671|pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|387941817|gb|AFK13398.1| DNA-directed RNA polymerase [Yersinia phage YpP-R]
Length = 883
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 76/324 (23%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 238 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHGAR 440
G GG++ P ++RTH +
Sbjct: 280 GITGGGYWANGRRPLALVRTHSKK 303
>gi|345571061|gb|EGX53876.1| hypothetical protein AOL_s00004g535 [Arthrobotrys oligospora ATCC
24927]
Length = 1466
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 122/281 (43%), Gaps = 28/281 (9%)
Query: 203 DKWKHMTYAPYFNNLPADMMAVITMHKLVGLL--MTNAGEVRVVQAACQIGEAIENEARI 260
D ++ Y PY L + +A IT+ ++ L ++ ++ + +G +E+E
Sbjct: 483 DNFERCQYGPYLRLLSPEKLAGITITSIIKLASGWQDSTAMKASASIISVGRNVEHEYIS 542
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK--KRVTSLIKKQ-KLQQVRGI 317
+ K+ + K EP + L K+ ++K K + LI +Q + ++
Sbjct: 543 EQLQKAFETKAG---------EPEYYKKKALQKQLAEVKNEKDLAMLIYRQNRRAEMEKD 593
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQP-PVDQ--LGDSPPDI---RPAFVHTL 371
G + ++ W Q KVG L+ LL + A I+ P ++ L D+ +PA VH
Sbjct: 594 GTGLLLNERWSQPVRAKVGSVLVSLLFQVAKIKVRPTNKKVLKHMDKDLAIDQPALVHGY 653
Query: 372 KSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFL 429
+ + G++ GVI K L E + +PM+ P W +N G ++F
Sbjct: 654 -----QFVGGKKIGVIRLHDEFSKKLMTEPLKGTTLAKQLPMIAKPRPWCAWNDGAYYFT 708
Query: 430 PSYVMRTHGARQQRETIK-MTPRSQLEPVFQVSRVLYSSIF 469
P+ ++R + +Q +K + L+ +F VL S+ +
Sbjct: 709 PTRMVRVKDSLEQTMYVKEASKHGNLDRLFTGLDVLGSTAW 749
>gi|223304|prf||0706231A polymerase,RNA
Length = 883
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSEGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSSHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIAIRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|30387455|ref|NP_848264.1| RNA polymerase [Yersinia phage phiA1122]
gi|30314092|gb|AAP20500.1| RNA polymerase [Yersinia phage phiA1122]
gi|432142747|gb|AGB07325.1| RNA polymerase [Yersinia phage R]
Length = 883
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 121/324 (37%), Gaps = 76/324 (23%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDS 359
KK +Q V +G++ G S W ++ + VG R I++L+E T + G
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVNLHRQNAGVV 237
Query: 360 PPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
D L EA+ R + P+ + P +VPP W
Sbjct: 238 GQDSETI---ELTPEYAEAIATRAGALAGISPM---------------FQPCVVPPKPWT 279
Query: 420 GYNRGGHFF---LPSYVMRTHGAR 440
G GG++ P ++RTH +
Sbjct: 280 GITGGGYWANGRRPLALVRTHSKK 303
>gi|50543664|ref|XP_499998.1| YALI0A12001p [Yarrowia lipolytica]
gi|49645863|emb|CAG83927.1| YALI0A12001p [Yarrowia lipolytica CLIB122]
Length = 1345
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 56/267 (20%)
Query: 212 PYFNNLPADMMAVITMHKLVGLLMTNAGE-----VRVVQAACQIGEAIENEARIQSFFKS 266
PY + M+++T+ +++ L T G V+ +G+A+E E R + +
Sbjct: 482 PYLKLMSPKTMSIVTIIEMMRL-QTTVGRSVESGVKTTNLVTSVGQALEIEYRCSQWSEK 540
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKR--VTSLIKKQKLQQVRGIVKGHVDS 324
KK L G LK+R V +I + L+ D+
Sbjct: 541 LGKKRTFLKKLTG------------------LKRRLKVMEMIHAEDLE----------DT 572
Query: 325 KP-WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
P W D KVG L+ +L++ A + + PV G S P F H+ + +
Sbjct: 573 VPAWAIDVRAKVGALLVDILIKVARMPVTAKDPV--TGASVTADVPVFCHSY-----QLV 625
Query: 380 KGRRYGVIEC-DPLVRK------GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
K +R G++ D +++K G E + + ++PML P W + GG++ +
Sbjct: 626 KRQRLGMVRMHDLMIQKVISTDIGAESSEAFVTPQFLPMLAEPKPWVAWKTGGYYVSQAS 685
Query: 433 VMRTHGARQQRETIKM-TPRSQLEPVF 458
VMR + +Q + + R L+ +F
Sbjct: 686 VMRARESSEQTAYLDTASERGDLDRLF 712
>gi|385867953|gb|AFI93668.1| T7 RNA polymerase [Binary vector pVCPGUS(I)23010]
gi|385867959|gb|AFI93673.1| T7 RNA polymerase [Binary vector pVCPGUS23010]
Length = 884
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 33 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 92
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 93 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 141
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 142 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 179
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 180 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 238
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 239 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 277
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 278 PWTGITGGGYWANGRRPLALVRTH 301
>gi|359322171|ref|XP_542220.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Canis lupus
familiaris]
Length = 1210
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G RL +LL+ET I P + P H + +SF R
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVYSFRSF-------R 603
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 439 ARQQRETIKMTPRSQLE 455
Q + + P ++L
Sbjct: 664 TMQHQRLLDSCPPAELH 680
>gi|145499932|ref|XP_001435950.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403087|emb|CAK68553.1| unnamed protein product [Paramecium tetraurelia]
Length = 1035
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/351 (19%), Positives = 137/351 (39%), Gaps = 46/351 (13%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L RQ+ IE + E A +Q + D+ + A +L + + WF L + ++Q
Sbjct: 181 LFERQLIIEQVSNELALDRFQQVFDDLQKMSKAQHLFAAQKYIVEWFPKLCALVQQEQIQ 240
Query: 199 ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMT------------NAGEVRVVQA 246
+ + Y Y + ++ +A+I + +L+ + N ++RV +
Sbjct: 241 CFSDPNKEQQGYHQYITAIQSEKLAIIALSELMKEFIEAAVLFHEEKTTLNCYQIRVTRL 300
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATD--NNLEGDSEPLTNDPEKLIKEQEKLKKRVT- 303
A +IGE I + + K+ ++K+ D +E + P E++ ++E K+
Sbjct: 301 ANRIGEQIMKQHLYEEEQKNLRRKSKEDIQKMIEEGTVPQDQSEEEIQNQKELFYKQAVV 360
Query: 304 ---SLIKKQKLQQVRGIVKGHVDSKPWGQ----DALVKVGCRLIQLLMETAYIQPPVDQL 356
L+K Q+ + I V +GQ D ++G L+ L+++ +
Sbjct: 361 KAGKLLKTQQEKLRERIRNNRVYLAKYGQAMPKDIAAQIGMVLVHFLVDSI-------KF 413
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-------M 409
+ P V K ++ + + L L G H Y +
Sbjct: 414 RNENNFWVPVLVQGYKKVKQDI----EVAIFNVNQLFLHHL-SAGMHKDNSYFMHLDRAL 468
Query: 410 PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
PM+ PP W GG++ P+ ++R Q E K R+ L+ ++ +
Sbjct: 469 PMIYPPAKWMDTQIGGYYLKPTNLIRIQDQSLQEEAAK---RANLQNLYDI 516
>gi|211939287|pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 7nt Of Rna
gi|211939296|pdb|3E3J|C Chain C, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
gi|211939297|pdb|3E3J|B Chain B, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
Length = 889
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 122/323 (37%), Gaps = 80/323 (24%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 38 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 97
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 98 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 146
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 147 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 184
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP 360
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q
Sbjct: 185 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQ----- 238
Query: 361 PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE-KTGRHMIIPYM--PMLVPPLN 417
+ G+ IE P + + + G I M P +VPP
Sbjct: 239 ---------------NAGVVGQDSETIELAPEYAEAIATRAGALAGISLMFQPCVVPPKP 283
Query: 418 WRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 284 WTGITGGGYWANGRRPLALVRTH 306
>gi|17570792|ref|NP_523301.1| RNA polymerase [Enterobacteria phage T3]
gi|133452|sp|P07659.1|RPOL_BPT3 RecName: Full=DNA-directed RNA polymerase
gi|15562|emb|CAA26719.1| unnamed protein product [Enterobacteria phage T3]
gi|15683|emb|CAA35121.1| 1 [Enterobacteria phage T3]
gi|17384276|emb|CAC86264.1| RNA polymerase [Enterobacteria phage T3]
Length = 884
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 74/323 (22%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L + Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAKEQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPSAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEAKHF------KKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR 440
GG++ P ++RTH +
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKK 304
>gi|301620987|ref|XP_002939816.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Xenopus
(Silurana) tropicalis]
Length = 1242
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-SPPDIRPAFVHTLKSFTKEALKGRRYG 385
W LV++G L+ L+++ I+ P D L P + P H + SF ++ G
Sbjct: 575 WPNSLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYH-MYSFRS----TKQIG 627
Query: 386 VIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQ 441
+I+ P+ + G + MPML PP+ W G + P+ +MR GA Q
Sbjct: 628 LIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQ 687
Query: 442 QRETIKMTPRSQLEPVF 458
+ ++ +P QL PV
Sbjct: 688 HQLLLEKSPPGQLYPVL 704
>gi|118360511|ref|XP_001013489.1| DNA-dependent RNA polymerase family protein [Tetrahymena
thermophila]
gi|89295256|gb|EAR93244.1| DNA-dependent RNA polymerase family protein [Tetrahymena
thermophila SB210]
Length = 1410
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 148/360 (41%), Gaps = 69/360 (19%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L RQ+ +E E+ QA ++ + D+ + LA N+ + K + WF L I ++Q
Sbjct: 405 LFERQLILEQESQSQAVNKFLKVYEDLNKFGLAVNIGFAKRYIMNWFPNLCKVIKEEQQQ 464
Query: 201 ---AQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVR--------------V 243
+ K + YA Y L A+ +A++++ +L+ ++ + + + +
Sbjct: 465 CLLGELKGERKYYATYLTKLSAERIAILSLTELMKQILRISNKFKESAENMENTIVDCSI 524
Query: 244 VQAAC--QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL-------------TNDP 288
V A IGEA+ + + K K+K D LE E + T
Sbjct: 525 VSKAIFSSIGEAVNLQYIYEQEEKLNKEKEKKD--LESLVEKINSNNTSNSSEEEVTQRA 582
Query: 289 EKLI--KEQEKLKKRVTSLIKKQ----KLQ-QVRGIVKGHVDSKPWGQDALVKVGCRLIQ 341
+K + K +E +K + SL KK+ KL Q GI K +K+G LI
Sbjct: 583 KKYLADKTKEANQKIMESLYKKKNSTSKLNYQEIGIPKT----------IQLKIGSLLIY 632
Query: 342 LLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY-GVIECDPLVRKGLEKT 400
L+ ET I+ + ++H L K++ Y GVI + L +
Sbjct: 633 LMKETIQIRNE-----------QNFWIHLLVPSYKKSKNNDGYVGVININEDFIISLYEQ 681
Query: 401 GRHMIIPYM------PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
P+M PM+ P W+ Y GG++ P+ +MR H + Q + + + S++
Sbjct: 682 SEKSESPFMHLERCLPMIYKPAPWQDYEIGGYYQRPTNLMRIHESPIQEKVLSYSDLSKM 741
>gi|334326802|ref|XP_001375862.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Monodelphis domestica]
Length = 1196
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
K W LV++G +LI++L+++ Y+ + SP F+ L L ++
Sbjct: 526 KVWPDVLLVRLGTQLIEILVQSIYMPNSL-----SPSQATKRFIPVL-YHVYSFLSIKQI 579
Query: 385 GVIECDPLVRKGLEKTGRHMI---IPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G I+ P + +++ + + MPML PP+ W N G + P+ +MR G
Sbjct: 580 GFIKPHPSFIQLVDEAAYTTLTFDVSVMPMLCPPIPWTSPNFGAYVLHPTKLMRCLDGTV 639
Query: 441 QQRETIKMTPRSQLEPVF 458
Q ++ ++ P+ QL V
Sbjct: 640 QHQQLLESCPQGQLNAVL 657
>gi|198475283|ref|XP_001356998.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
gi|198138752|gb|EAL34064.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
Length = 1363
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 56/353 (15%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWE-----QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW 186
G AK L R Q+K+E + + KE+ + AD C ++L K L W
Sbjct: 496 GYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFAN--ADKCRERL-------KELEQSW 546
Query: 187 FEPLRDAIAKDQAT--AQDKWK---HMTYAPYFNNLPADMMAVITMHKLVGL-LMTNAGE 240
+ + AI +D T AQ ++K +M Y Y +L A I + +L L +
Sbjct: 547 RKQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKLGEGSETFS 606
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN--DPEKLIKEQEKL 298
V Q ++GE ++ +I+ KK N T LE E ++ D Q+
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGT---LEKVGEIYSSYCDLWDSGNTQDNA 658
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV----- 353
++ L+ +Q+ + PW + L VG L +LM I P +
Sbjct: 659 RQAWQRLVHEQR----ESGPSMDLPEVPWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKS 714
Query: 354 DQLGDSPPDIRPAFVHTLKS---FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-- 408
S ++ PAF ++ KE +K P++ + L + R + +
Sbjct: 715 KSKTTSSQNLLPAFYTLFRNQGRLVKEEVKPH--------PVLSR-LLRGSRQQTLTFDS 765
Query: 409 --MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVF 458
+PML PP W + GG+ S ++R H A QQ E I+ + L P
Sbjct: 766 NLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPAL 818
>gi|195437825|ref|XP_002066840.1| GK24692 [Drosophila willistoni]
gi|194162925|gb|EDW77826.1| GK24692 [Drosophila willistoni]
Length = 1353
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 150/379 (39%), Gaps = 55/379 (14%)
Query: 103 ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----QAA 157
EL++ NE S L + D +G + L R Q+K+E + + +
Sbjct: 463 ELLNHLNE---STLKGENKPDYAIMNPKSGYTKDQLEQLAREQLKVELDGCITIKSIEKS 519
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTYAP 212
KE+ + A+ C ++L K L W + + AI +D T AQ ++K +M Y
Sbjct: 520 KEFAN--AEKCRERL-------KELEQNWRKQISVAIVRDMNTLRAQVRFKPHGYMNYYT 570
Query: 213 YFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
Y L I + +L L + V Q ++G+ ++ +I+ KK N
Sbjct: 571 YLKVLDTSHYTDIVIKELYKLAEGSETFSPTVGQLYKELGQKVQRRYQIEQ-----KKHN 625
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD--SKPWGQ 329
T + GD D + Q+ ++ L+ Q R I +D PW
Sbjct: 626 GTLEKI-GDIYSSYCDIWDSGRTQDNTRQIWQRLVHDQ-----REIGGPSMDLPEIPWPS 679
Query: 330 DALVKVGCRLIQLLMETAYIQPPVDQLGD--SPPDIRPAFVHTLKS---FTKEALKGRRY 384
+ L VG L +LM I + + + S ++ PAF ++ KE +K
Sbjct: 680 NVLTGVGRFLYNILMRDIKIDSHIMRQNNRQSTQNLMPAFYTLFRNQGRLVKEEVKPH-- 737
Query: 385 GVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
P++ + L + R + + +PML PP W + GG+ S ++R H A
Sbjct: 738 ------PVLSRLL-RASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQA 790
Query: 440 RQQRETIKMTPRSQLEPVF 458
QQ E I T Q+ P
Sbjct: 791 VQQWERINATNPEQIYPAL 809
>gi|452838720|gb|EME40660.1| hypothetical protein DOTSEDRAFT_74265 [Dothistroma septosporum
NZE10]
Length = 1467
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 154/383 (40%), Gaps = 76/383 (19%)
Query: 136 AKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA 195
A+ L++ + I + W +A +E + + Q + +L W++ L A+
Sbjct: 376 ARQERLEKTSVDIAIDRWRKADEELKKIGIHTAMQSRP-----IGALMWQWYDSLLPALE 430
Query: 196 KDQ------------ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLL---MTNAG- 239
K+ T + +H TY PY LP +A T+ + + N+G
Sbjct: 431 KELEEVKKTLGESVLGTPGEHDRH-TYGPYLELLPLKKVAANTILYTMAQMARGQRNSGD 489
Query: 240 -----EVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
E + Q + AIE+E K +K+ + +P +L K+
Sbjct: 490 TWKEQEAALGQITVGLANAIEDECTADMSSKQQGRKSVQN----------ARNPARLRKQ 539
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGH--------VDSKPWGQDALVKVGCRLIQLLMET 346
+ SL QK KG + W VK+G L L+ET
Sbjct: 540 A------LRSLQVAQKADSASKKKKGRSKETNQQILSQLEWPVSMKVKLGAMLTSKLIET 593
Query: 347 AYIQPPVDQLGDSP------PDIRPAFVHTLKSFTKEALKGRRYGVIECDP--LVRKGLE 398
A Q PV + + P ++PAF+H +K KG+R G++ +P LV+ E
Sbjct: 594 A--QLPVTR--EHPRTKQKITQMQPAFLHRMK-----WQKGKRVGMVTPNPALLVKMQSE 644
Query: 399 KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTP--RSQLEP 456
G ++ MPM+V P W+G+ GG+ + ++R + + M R +L+
Sbjct: 645 PLG-SLLAKRMPMVVEPKPWQGWKDGGYLHYSNDILRLPAGDKSGKDYFMAADRRKELDT 703
Query: 457 VFQ----VSRVLYSSIFYDLFNL 475
V++ +S+V + + +D+F +
Sbjct: 704 VYKGLTALSKVPW-KVNHDVFKV 725
>gi|429848594|gb|ELA24058.1| DNA-directed RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1383
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
PW VK+G L+ L+ETA I + PV Q +PAF H L+ +G
Sbjct: 541 PWPVAVKVKLGAMLLTALLETAKIKVVQEQPVTQTLIH--QYQPAFSHALR-----LKRG 593
Query: 382 RRYGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
++ G+I + + ++ R + ++PM+VPP W +N+GG S V+R G
Sbjct: 594 KKIGMILLNKTLVTIMKSEPRGDYLAKHLPMVVPPEPWTDFNKGGFLESSSAVVRVKQGD 653
Query: 440 RQQR 443
++Q+
Sbjct: 654 KEQK 657
>gi|194100364|ref|YP_002003938.1| gp1 [Enterobacteria phage 13a]
gi|193201411|gb|ACF15888.1| gp1 [Enterobacteria phage 13a]
Length = 883
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 122/327 (37%), Gaps = 82/327 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+ V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSVDNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHGAR 440
W G GG++ P ++RTH +
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKK 303
>gi|195575683|ref|XP_002077706.1| GD22928 [Drosophila simulans]
gi|194189715|gb|EDX03291.1| GD22928 [Drosophila simulans]
Length = 1369
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 156/386 (40%), Gaps = 61/386 (15%)
Query: 103 ELIDQFNEKGVSIL--DSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETE------AWE 154
EL+D NE + ++ + D G TA+ L R Q++IE + ++E
Sbjct: 469 ELLDHLNEHILPVVAKEEPGKADYAIMNSKRGYTTAQLEQLAREQLRIELDGSITIKSFE 528
Query: 155 QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMT 209
++ KE+ + ++ C ++L + L W + + AI +D T AQ ++K M
Sbjct: 529 KS-KEFAN--SEKCRERL-------RELEDTWRKQILAAIVRDLNTLRAQVRFKPHGFMN 578
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
Y Y L A A I + +L L + V Q ++G+ ++ +I+ K
Sbjct: 579 YYTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----K 633
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
K N T LE E ++ E Q+ ++ L+ +Q+ + P
Sbjct: 634 KHNGT---LEKIGEIYSSYCELWDSGMSQDNTRQAWQRLVHEQR----ESGPSMDLPEVP 686
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPV------DQLGDSPPDIRPAFVHTLKS---FTKE 377
W + L VG L +LM I + + P ++ PAF ++ F KE
Sbjct: 687 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKE 746
Query: 378 ALKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYV 433
+K P++ + L + R + + +PML PP W + GG+ S +
Sbjct: 747 EVKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 797
Query: 434 MRT-HGARQQRETIKMTPRSQLEPVF 458
+R H A QQ + I + QL P
Sbjct: 798 IRLPHQAIQQWDRIMASNPQQLYPAL 823
>gi|224116180|ref|XP_002331981.1| predicted protein [Populus trichocarpa]
gi|222832105|gb|EEE70582.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 401 GRHMIIPYMPMLVPPLNWRG 420
RHM+IPYMPMLVPPL WRG
Sbjct: 91 ARHMVIPYMPMLVPPLRWRG 110
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 38/115 (33%)
Query: 233 LLMTNA--GEVRVVQAACQIGEAIENE-------ARIQSFFKSTKKK----NATDNNLEG 279
++MT G RVV AAC IG+AIE E RI + + T+KK + + N +EG
Sbjct: 1 MVMTGGEHGCARVVTAACMIGDAIEQEIFSVMKQIRIHNILEKTRKKKERADDSKNGVEG 60
Query: 280 DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVK 334
+S ++KEQE L+K KG DSKP DA K
Sbjct: 61 ESPA-------VMKEQENLRK------------------KGKDDSKPRNADARAK 90
>gi|281210629|gb|EFA84795.1| DNA-dependent RNA polymerase [Polysphondylium pallidum PN500]
Length = 1010
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 339 LIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE 398
+ Q M YI G+ + PAF + + ++YGVI C V ++
Sbjct: 250 MFQCCMINKYID------GEDIDEKVPAFYYKYRYNN-----NKKYGVISCHDNVYSLMD 298
Query: 399 KTGRHMIIPYM-----PMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQ 453
+ H ++ M PM+VPP W N+G + P ++MRT+G++ Q+ ++ +S
Sbjct: 299 EG--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSLY---QSD 353
Query: 454 LEPVFQVSRVL 464
L +++ VL
Sbjct: 354 LTNIYEGLNVL 364
>gi|37956803|gb|AAP34070.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V AA
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAAASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +V P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVLPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|148235669|ref|NP_001080987.1| polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
gi|6625742|gb|AAF19376.1|AF200705_1 RNA polymerase [Xenopus laevis]
gi|213626594|gb|AAI69686.1| Polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
Length = 1235
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-SPPDIRPAFVHTLKSFTKEALKGRRYG 385
W LV++G L+ L+++ I+ P D L P + P H + SF ++ G
Sbjct: 568 WPNTLLVQLGTHLVDLMVQE--IKVPNDLLSSRDDPKLIPVLYH-MYSFRS----TKQIG 620
Query: 386 VIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
+I+ P+ + ++ R + + MPML PP+ W G + P+ +MR GA
Sbjct: 621 LIKPHPIFSQ-IQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGAV 679
Query: 441 QQRETIKMTPRSQLEPVF 458
Q + ++ +P QL PV
Sbjct: 680 QHQLLLEKSPPGQLYPVL 697
>gi|37956858|gb|AAP34124.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V AA
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAAASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +V P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVLPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|119481989|ref|XP_001261023.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
gi|119409177|gb|EAW19126.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
Length = 1376
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 96/261 (36%), Gaps = 53/261 (20%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+QQ + W
Sbjct: 488 -------NETGADSRRLKALKE-LLAGRKKKDGRAKWHALVQKMQQEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETA----YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
KVG L+ LL E I+ P + ++PAF H + GRR
Sbjct: 533 SPRVTAKVGAVLMSLLFEVGKAPVTIEDP--ETKKKTVTMQPAFQHAY-----QITWGRR 585
Query: 384 YGVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + P + + + K GRH+ PM+ P W+G GG S ++RT
Sbjct: 586 TGYLHLHPAIVQIIAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRT- 639
Query: 438 GARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 640 -----------TPGESLQPTY 649
>gi|195159574|ref|XP_002020653.1| GL15084 [Drosophila persimilis]
gi|194117603|gb|EDW39646.1| GL15084 [Drosophila persimilis]
Length = 1427
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 56/353 (15%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWE-----QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGW 186
G AK L R Q+K+E + + KE+ + AD C ++L K L W
Sbjct: 496 GYSKAKLEQLARDQLKVELDGCITIKSIEKTKEFAN--ADKCRERL-------KELEQSW 546
Query: 187 FEPLRDAIAKDQAT--AQDKWK---HMTYAPYFNNLPADMMAVITMHKLVGL-LMTNAGE 240
+ + AI +D T AQ ++K +M Y Y +L A I + +L L +
Sbjct: 547 RKQISTAIVRDLNTLRAQVRFKPHGYMNYYTYLKSLDTAHFADILIKELYKLGEGSETFS 606
Query: 241 VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN--DPEKLIKEQEKL 298
V Q ++GE ++ +I+ KK N T LE E ++ D Q+
Sbjct: 607 PTVGQLYKELGEKVQQRYQIEQ-----KKHNGT---LEKVGEIYSSYCDLWDSGNTQDNA 658
Query: 299 KKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPV----- 353
++ L+ +Q+ + PW + L VG L +LM I P +
Sbjct: 659 RQAWQRLVHEQR----ESGPSMDLPEVPWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKS 714
Query: 354 DQLGDSPPDIRPAFVHTLKS---FTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPY-- 408
S ++ PAF ++ KE +K P++ + L + R + +
Sbjct: 715 KSKTTSSQNLLPAFYTLFRNQGRLVKEEVKPH--------PVLSR-LLRGSRQQTLTFDS 765
Query: 409 --MPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVF 458
+PML PP W + GG+ S ++R H A QQ E I+ + L P
Sbjct: 766 NLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAIQQWERIRASNPQHLYPAL 818
>gi|255953185|ref|XP_002567345.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589056|emb|CAP95178.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1353
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 43/256 (16%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y + L D +A +T+ ++ + +++ A +G+ +++E ++ K
Sbjct: 416 YGVFLQALDPDRLAALTLLSVMSCFSRQGMDKGLKLSAIASIVGKELQDEIIADTYLK-- 473
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K K+ + L+ E L N +K Q +L+ R SL++K + +S W
Sbjct: 474 KNKSVDPSRLKALKETLANRKDK----QGRLRWR--SLVEKMNAED---------ESIIW 518
Query: 328 GQDALVKVGCRLIQLLMETA----YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
G + VKVG L+ +L+E A + + PV + +++PAF H+ + G+R
Sbjct: 519 GSRSQVKVGGVLMSMLVEVAKAPVWTEDPVTK--KRTLNMQPAFDHSYQIHF-----GKR 571
Query: 384 YGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
G I +V ++ ++ ++PM+ P W G GG+ S ++RT
Sbjct: 572 SGHIHMHSKIVDIVAKEPPAEVLARHLPMVCKPKPWTGPRSGGYKIYESSLVRT------ 625
Query: 443 RETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 626 ------TPGELLQPAY 635
>gi|37956700|gb|AAP33969.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A + V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P ++P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVIPSK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|37956752|gb|AAP34020.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A + V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNITVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P ++P
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVIPSK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>gi|452978725|gb|EME78488.1| hypothetical protein MYCFIDRAFT_205064 [Pseudocercospora fijiensis
CIRAD86]
Length = 1345
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTK 268
Y PY LP +A T + +MT R+ + +EA++ S +
Sbjct: 336 VYGPYLEMLPIKKVAANT----ILFIMT-----RMANGKDRSTGVYASEAKLNSLTVTLS 386
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVR-GIVKGHVDSKP- 326
K ++E L + + + K TS I++Q + ++ GI K + K
Sbjct: 387 KSI--------EAECLASVARQKASAPQNRKTNTTSHIRRQAVSALKKGIDKANTSPKTK 438
Query: 327 -------------WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDI----RPAFVH 369
W K+G L+ ++E A++ PV + ++ +PAF+H
Sbjct: 439 AKKASQAMLAEVEWPLVVHAKLGAMLVSKVLECAHL--PVTRQHPRTKEMITQMQPAFLH 496
Query: 370 TLKSFTKEALKGRRYGVIECDPLVRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
LK KG++ G+I +P + L E G +I MPM+V P W G++ GG+
Sbjct: 497 RLKYE-----KGKKTGIISPNPALLDKLQSEPVGS-LIAKRMPMVVEPKPWTGWSDGGYL 550
Query: 428 FLPSYVMR 435
+ V+R
Sbjct: 551 HYSNPVLR 558
>gi|456754161|gb|JAA74232.1| polymerase (RNA) mitochondrial (DNA directed) [Sus scrofa]
Length = 1219
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G RL ++L++ + + DS I P H + +SF R
Sbjct: 547 QPWSLSVLVQLGKRLAEMLVQAVRMPSNLATPRDSNTLI-PVLYHVYSFRSF-------R 598
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ G+++ P R+ LE + +PML PPL W + G P+ +MR+
Sbjct: 599 QIGILKPHPAFRQLLETAAEGTLTFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSVEG 658
Query: 440 RQQRETI 446
QQ + +
Sbjct: 659 TQQHQVL 665
>gi|300120042|emb|CBK19596.2| DNA-directed RNA polymerase [Blastocystis hominis]
Length = 276
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L +RQ+++E A + A ++YQ + A++ + +L + L WF+PL AI ++Q
Sbjct: 94 LLKRQLELEENAIDLAVQKYQAMKAEVEKIGQGVSLRPAQILLADWFDPLSTAIREEQLN 153
Query: 199 ----ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAI 254
+ + PY L + +++I +H+LV +LM + +G+ I
Sbjct: 154 IKYSSQGKGAISEKAIQPYLLLLKPEKISIIVLHELVHILMQSPAGNAYTFCCENVGKII 213
Query: 255 ENEA 258
++EA
Sbjct: 214 KSEA 217
>gi|241957393|ref|XP_002421416.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223644760|emb|CAX40751.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1211
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDSKPWGQ-------DALVKVGCRLIQLLMETAYI---Q 350
++T++I+K K ++ H S G+ DA +K+ +L++L+ME I
Sbjct: 394 KLTTIIEKMKYS-FPSVLSQHASSNLKGEIFQFIHDDAYIKLTHQLVKLIMENCKIAMTN 452
Query: 351 PPVDQLGDS----PPDIR------------PAFVHTLKSFTKEALKGRRYGVIECDPLVR 394
++QL +S DI PAF K T K + Y +E P +
Sbjct: 453 KQIEQLQNSLKLENKDIAQQFLISTGDGKYPAFCKETKRITS---KNKTYITVEVHPYIE 509
Query: 395 KGLE--KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS 452
L+ K G H+ Y+PML PP W GG+ + + + T+ + Q + R
Sbjct: 510 SKLQSLKLGTHL--HYLPMLHPPKPWVSPESGGYLTIKTNFVSTNDSIQVELLNRAGVRG 567
Query: 453 QLEPVF 458
QL+ +
Sbjct: 568 QLDNAY 573
>gi|223995603|ref|XP_002287475.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220976591|gb|EED94918.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 1217
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 95/445 (21%), Positives = 164/445 (36%), Gaps = 131/445 (29%)
Query: 131 TGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPL 190
T T KY L+R Q+++E E+ E+A + ++ +P ++ + W+ L
Sbjct: 239 TRHSTDKYKELRRLQLQLEIESTEEAVMKCLSTWNSARDRSDHTTIPAIRKVVTSWYGSL 298
Query: 191 RDAIAKDQ------------------------------------ATAQDKWKHMTYAPYF 214
+AI +Q A+D+ Y P
Sbjct: 299 TEAIELEQWLYLNGDNKTSSSSQLDTQSGEDGGESTNSNGLQKTDVARDR---TIYGPLL 355
Query: 215 NNLPADMMAVITMHKLVGLLMTNAGEV--RVVQAACQIGEAIENEARIQSFFK------- 265
LP A++ H + + GE+ +VV A I +A+E E + +
Sbjct: 356 CLLPPQKTAILLAHTALSCSVA-GGELGSKVVSLAIYIAQALETEVNVSRALRVRASQRK 414
Query: 266 -------------------STKKKNATD---NNLEGD-----------------SEPLTN 286
STK N +D +N+ D T+
Sbjct: 415 WKMNNLEDEGDEVDGVVQMSTKPPNGSDSLSDNITVDKWVYTATHLKRFLDELSGNGATS 474
Query: 287 DPEKLIKEQEKLKKRVTSLIKK--QKLQQVRGIV-KGHVDS-----KP--------WGQD 330
+K +K Q +L+ +L++K Q + G + +G D +P W
Sbjct: 475 GDQKPLKGQGRLRP---ALVRKRCQDILLAEGFMGEGDDDGTTAPKRPISLTDFAEWDPV 531
Query: 331 ALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECD 390
VK+G LI+LL+E + G SP PAF ++ K + G +
Sbjct: 532 LKVKLGAALIRLLLEHTSFS---KRRGSSP---EPAFFYSRKKTGEMKFNG----FVTIH 581
Query: 391 P-LVRKGLEKTGRH---MIIP-YM------PMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
P L++ +++ H I P YM PM+VPP +W+ + GG+ + + MRT
Sbjct: 582 PELLKIAMKEELSHDSSFISPRYMQNTRCQPMVVPPKDWKAVDDGGYETIKTEFMRTRHC 641
Query: 440 RQQRETIKMTPRSQLEPVFQVSRVL 464
+ Q++ I+ + L VF+ VL
Sbjct: 642 KTQKDAIR---HADLTQVFEGLNVL 663
>gi|345893809|ref|ZP_08844601.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045845|gb|EGW49744.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
Length = 898
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 67/379 (17%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQ-- 198
L RQ+ +E E Q + + E++ Y L EPL AI Q
Sbjct: 40 LINRQLALEEEMLTQGRARWLHTIQAAKERRNEAATSYGHMLLKRGVEPLAAAIRAFQEQ 99
Query: 199 -ATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENE 257
AT + +H + + ++ A I++ K + + T ++ + + I A+E E
Sbjct: 100 AATGRAGRRHASVG-LLAGIEPEVAAFISLRKALDRMTTP--DITMQAVSVDIARALELE 156
Query: 258 ARIQSFF-KSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRG 316
++ + + T + T +++G S +K ++ V S +
Sbjct: 157 KKVLALRDQDTPRYKMTKRHIQGHS-------------SQKYRRTVLSYAFGKS------ 197
Query: 317 IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK 376
G V +PW + + +G ++++L+ME+ I V RP + S
Sbjct: 198 ---GTVAFRPWSRPDCLHLGQKMLELIMESTGIFHLVR---------RPLPGRRISSAAD 245
Query: 377 EALKGRRYGVIECDPLVRKGLEK---TGRHMIIPYMPMLVPPLNWRGYNRGGHFFL---- 429
+ G Y +E P R L++ T M Y+P +VPP WRG GG++ L
Sbjct: 246 SS--GWVY-TLELSPSCRDWLQRHRETAGLMYPDYLPTIVPPKPWRGAGGGGYYSLDDTR 302
Query: 430 PSYVMRTHGARQQRETIKMTPRSQLE------------------PVFQVSRVLYSSIFYD 471
P +++ QR+ + +L+ PV +V+R L+ D
Sbjct: 303 PLSLVKLGDMDYQRDLDRRIQNGELKDVLMAVNAMQNTAWSINAPVLEVARRLWDVTGGD 362
Query: 472 LFNL-YRLIINFLMCSFCG 489
+ L R +C CG
Sbjct: 363 VAGLPKRDGWRLPLCPVCG 381
>gi|156402875|ref|XP_001639815.1| predicted protein [Nematostella vectensis]
gi|156226946|gb|EDO47752.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKE 377
+K +D PW L GC LI L+++ I + + P F H+ E
Sbjct: 169 LKQEIDDLPWATKLLC--GCTLIDFLIQSVKID--ANLFNAKSESLLPGFYHSY-----E 219
Query: 378 ALKGRRYGVIECDPLV---RKGLEKTGRHMIIPY--MPMLVPPLNWRGYNRGGHFFLPSY 432
+ R+ GVI+ +V KG + +P +PMLVPP WR GG P
Sbjct: 220 FRERRKIGVIKPHSVVCKLFKGYLADHGDIAMPTTSLPMLVPPRPWRDIRDGGFLIQPVQ 279
Query: 433 VMRT 436
+MR+
Sbjct: 280 LMRS 283
>gi|425767195|gb|EKV05770.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425769079|gb|EKV07586.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1288
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 49/259 (18%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y + L D +A +T+ ++ + +++ A +G+ +++E +F K
Sbjct: 329 YGVFLQALDPDRLAALTLLSVMSTFSRQGMDKGIKLSILASVVGKELQDELIADTFLKRN 388
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K +++ L+ + L N +K Q +L+ R SL++K + +S W
Sbjct: 389 KSMDSS--RLKALKQTLANRKDK----QGRLRWR--SLVEK---------INAENESILW 431
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPD------IRPAFVHTLK-SFTKEALK 380
G + VK+G L+ +L+E + + PV + P ++PAF H+ + +F
Sbjct: 432 GSRSQVKIGAVLMSMLVEVS--KAPV--WTEDPATKKRILTMQPAFDHSYQINF------ 481
Query: 381 GRRYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
G+R G I + LV + ++ ++PM+ P W G GG+ S ++RT
Sbjct: 482 GKRSGHIHMNSKLVEIVAREPPAELLARHLPMVCKPRPWTGPRSGGYKVYESNLVRT--- 538
Query: 440 RQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 539 ---------TPGELLQPAY 548
>gi|116195484|ref|XP_001223554.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
gi|88180253|gb|EAQ87721.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
Length = 1414
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 144/353 (40%), Gaps = 39/353 (11%)
Query: 114 SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLA 173
S+ + SML + P G +G+ + Q ++E + + A +++ + L
Sbjct: 335 SLKTALSMLSELPP--GLDIGSLPIAQRREVQARLEKDCVDAAVARWREENEALMGMGLN 392
Query: 174 PNL--PYVKSLFLGWFEPLRDAIAKDQAT----------AQDKWKHMTYAPYFNNLPADM 221
L P + S W + L A++QA +++ Y P+ PA
Sbjct: 393 TQLSTPTLNSKLYDWHQALEARFAEEQAKVEVSESATKKSKEDMDRCVYGPHLLQSPAKR 452
Query: 222 MAVIT-MHKLVGLLMTNAGE----VRVVQAACQIGEA---IENEARIQSFFKSTKKKNAT 273
+A +T + L L M A + +VQ +I E +N+A+ KS ++ +
Sbjct: 453 LAAVTILSALSSLAMHGADKGIPVSNMVQQLAKIAEEDIRAQNQAKRAPNAKSKPRRQQS 512
Query: 274 DNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGH--------VDSK 325
L + +P + + + + + + V + V+++
Sbjct: 513 ARQLIRLYDSTPGEPAAVPEAEPTAAAEAEPAAEPESMPPAPPAVTDNSFAYRADSVEAR 572
Query: 326 PWGQDALVKVGCRLIQLLMETAYI--QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
W KVG L+ LM+TA I Q + + +PAF H + + KGR+
Sbjct: 573 -WPMLIKAKVGAVLLAALMDTAKIVVQREHPETKEKLSQTQPAFTHAV-----QLKKGRK 626
Query: 384 YGVIECDPLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
GVI+ + + + +++ R + ++PM+V P+ W +++GG P+ ++R
Sbjct: 627 IGVIQPNRELIELMKREPRGEALARHLPMVVEPVPWSKFDKGGFISAPTPLIR 679
>gi|195350263|ref|XP_002041660.1| GM16628 [Drosophila sechellia]
gi|194123433|gb|EDW45476.1| GM16628 [Drosophila sechellia]
Length = 1364
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 151/383 (39%), Gaps = 59/383 (15%)
Query: 103 ELIDQFNEKGVSI--LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----Q 155
EL+D NE + + + D G TA+ L R Q++IE + +
Sbjct: 464 ELLDHLNEHIIPVGAKEEPGKADYAIMNSKRGYTTAQLEQLAREQLRIELDGSITIKSIE 523
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTY 210
+KE+ + ++ C ++L + L W + + AI +D T AQ ++K M Y
Sbjct: 524 KSKEFAN--SEKCRERL-------RELEDTWRKQILAAIVRDLNTLRAQVRFKPHGFMNY 574
Query: 211 APYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y L A A I + +L L + V Q ++G+ ++ +I+ KK
Sbjct: 575 YTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KK 629
Query: 270 KNATDNNLEGDSEPLTNDPEKLIK--EQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N T LE E ++ E Q+ ++ L+ +Q+ + PW
Sbjct: 630 HNGT---LEKIGEIYSSYCELWDSGMSQDNTRQAWQRLVHEQR----ESGPSMDLPEVPW 682
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPV------DQLGDSPPDIRPAFVHTLKS---FTKEA 378
+ L VG L +LM I + + P ++ PAF ++ F KE
Sbjct: 683 PSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEE 742
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
+K P++ + L + R + + +PML PP W + GG+ S ++
Sbjct: 743 VKPH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 435 RT-HGARQQRETIKMTPRSQLEP 456
R H A QQ + I + L P
Sbjct: 794 RLPHQAIQQWDRIMASNPQHLYP 816
>gi|403169890|ref|XP_003329308.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168465|gb|EFP84889.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1409
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 16/225 (7%)
Query: 222 MAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDS 281
+AV+ + + +G N G + + +G+AIENE Q+ K + N + +
Sbjct: 498 VAVVEVIREMGNSTINDG-AKSIGLFIALGKAIENEWYAQTI------KAIPELNQKLLA 550
Query: 282 EPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG-HVDSKPWGQDALVKVGCRLI 340
T + E L + I K +L+ + ++ H D+ W KVG ++
Sbjct: 551 AIKTLNQENLDATASRSVDHTVRKIWKSELKNYQADLQAIHGDNFDWTIQQRSKVGALVM 610
Query: 341 QLLMETAYI-QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV--RKGL 397
+ L+ET+ I + V + G +++PAF T + F G+R GV + + V R L
Sbjct: 611 RGLLETSKITRSTVLEDGSVYEEVQPAFYQTTQYF-----DGKRVGVTKMNEAVAERLDL 665
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQ 442
+ + Y+PM+ P+ W G + + +MRT + +Q
Sbjct: 666 DPANVSLHPRYLPMVCRPMPWTHPKNGAYLVHGAPLMRTRDSPEQ 710
>gi|302655337|ref|XP_003019459.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
gi|291183183|gb|EFE38814.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
Length = 1305
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 373 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 432
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 433 VEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 474
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 475 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 527
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 528 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 587
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 588 DAQSQYLQAASDRGDLDELYKGLTIL 613
>gi|302498776|ref|XP_003011385.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
gi|291174935|gb|EFE30745.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
Length = 1305
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 373 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 432
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 433 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 474
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 475 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 527
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 528 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 587
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 588 DAQSQYLQAASDRGDLDELYKGLTIL 613
>gi|326484447|gb|EGE08457.1| DNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1375
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 111/267 (41%), Gaps = 38/267 (14%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YTPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHAKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
W +K+G L +L TA I P +++ + PAF H +
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAK---EPAFQHVY-----QLQ 596
Query: 380 KGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
KG G ++ + +V K ++ +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 597 KGHNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRH 656
Query: 438 GARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 657 DDAQSQYLQAASDRGDLDELYKGLTIL 683
>gi|353240452|emb|CCA72321.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 1283
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 30/255 (11%)
Query: 217 LPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATD 274
LP + + +I M +L+ +L + E R + IG AIE E F+ KK +
Sbjct: 383 LPPEKLTLICMLELLNMLASGGYEDGARTTRVLLSIGAAIEAE----HHFQMAKKHDIPV 438
Query: 275 NNLEGDSE-PLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALV 333
+ + SE P + L +E++K R+ ++ + PW Q+
Sbjct: 439 PDFKSKSELPTYSVAGYLELHKERVKARLELEGRENWM-------------PPWTQEVRA 485
Query: 334 KVGCRLIQLLMETA-YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPL 392
+VG + LME A IQ V + D + + + + G + GVI+ + +
Sbjct: 486 RVGAFVADALMEQAKVIQTKV--INDVVHEEEQQAFYNAYRYER----GFKIGVIKMNDM 539
Query: 393 VRKGL--EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK-MT 449
+ L E + ++PM+V P W +N GG+ + VMR + +Q ++
Sbjct: 540 IIDKLSREPPRERLHARHLPMVVRPRPWLRHNAGGYLYSNLSVMRMKESNEQTSYLREAD 599
Query: 450 PRSQLEPVFQVSRVL 464
R +E V+ VL
Sbjct: 600 SRGAMELVYAGLDVL 614
>gi|224148781|ref|XP_002336713.1| predicted protein [Populus trichocarpa]
gi|222836570|gb|EEE74977.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 434 MRTHGARQQRETIKMTPRSQLEPVFQ 459
MR HGA+QQRE +K PR QL+PVF+
Sbjct: 1 MRIHGAKQQREAVKTAPRKQLQPVFE 26
>gi|327305697|ref|XP_003237540.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
gi|326460538|gb|EGD85991.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
Length = 1375
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YIPFLLAIGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHTKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVTEKVTYAKE--PAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 658 DAQSQYLQAASDRGDLDELYKGLTIL 683
>gi|317487306|ref|ZP_07946101.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316921496|gb|EFV42787.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 882
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 59/297 (19%)
Query: 144 RQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK--DQATA 201
RQI++E E ++ Y +A E+ N Y K L EP+ AI++ + A
Sbjct: 28 RQIELEKEMADRGRDRYYTTVARNTERNAEANTSYGKMLLKRGIEPMARAISEFMESAKQ 87
Query: 202 QDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQ 261
+ + ++A I + K++ + RV + +G +E E ++
Sbjct: 88 GGAGRRHKAVGMLEGMDVQVVAFIALRKVLDTFSQSMPYQRV---SILVGREVEMEKKLT 144
Query: 262 SFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTS-LIKKQKLQQVRGIVKG 320
+KEQ+ + R+T I K ++ R V
Sbjct: 145 E-----------------------------LKEQDPDRYRMTQRYIAGSKARKYRRTVLN 175
Query: 321 H-------VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373
+ V+ +PW + + +G +LI+L ME+ I V V + K
Sbjct: 176 YAFGKSTTVEYEPWAEADCLHLGQKLIELAMESCGIFHLVQ-------------VPSQKV 222
Query: 374 FTKEALKGRRYGVIECDPLVRKGLEKTGRH--MIIP-YMPMLVPPLNWRGYNRGGHF 427
K + Y +E P R+ +E+ H M+ P Y+P L+ P W G GG++
Sbjct: 223 KGKTMFQSTHYS-LEPTPSCREWVERHKDHASMMYPDYLPTLIEPKPWEGAGGGGYY 278
>gi|326471406|gb|EGD95415.1| DNA-directed RNA polymerase 1A [Trichophyton tonsurans CBS 112818]
Length = 1375
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 111/267 (41%), Gaps = 38/267 (14%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E I++ +S
Sbjct: 443 YTPFLLAVGPSKLAAVTILSVLGSIGSSGIDKGIKLSSLFTNIGRAVKDEYIIETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ ++N E L K + + R ++ H +P
Sbjct: 503 IEEAQSEN------------------EVYYLNKTFRQMKVYNSTGKFRSYMQKHAKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
W +K+G L +L TA I P +++ + PAF H +
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPITEKVTYAK---EPAFQHVY-----QLQ 596
Query: 380 KGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
KG G ++ + +V K ++ +++ ++PM+ P W N+GG P+ V+RT H
Sbjct: 597 KGHNVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRH 656
Query: 438 GARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 657 DDAQSQYLQAASDRGDLDELYKGLTIL 683
>gi|260942581|ref|XP_002615589.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
gi|238850879|gb|EEQ40343.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
Length = 1311
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 42/264 (15%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKST 267
YAPY +P ++VIT+ +L+ L T +R +A +G+AIE E + Q +
Sbjct: 460 YAPYLVLIPPKKLSVITILELLKLNSTGGIVDGMRTARAVISVGKAIELEYKSQGLVAAE 519
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
K+ G +N +K+++ ++ G+ S W
Sbjct: 520 KR-------FLGRKAKSSNQWKKILRNRKPSGDEA-------------GL------STEW 553
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L LL+ A + PV G +PAF HT + + G+R
Sbjct: 554 DYPVYAKLGSVLTSLLLHVAKV--PVTGTDPTTGKQVKGKQPAFHHTY-----QFVNGQR 606
Query: 384 YGVIECDPLVRKGLEKTG--RHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQ 441
G+I+ + K L + +PML+PP +W +N+GG+ F PS ++R + +
Sbjct: 607 LGIIKLHKNLVKQLASNTLINSVQPQLLPMLLPPSDWTSHNQGGYRFTPSTLVRIKDSAE 666
Query: 442 QRETIKMTPRS-QLEPVFQVSRVL 464
+K + L+ V++ VL
Sbjct: 667 TVAYVKAASEANNLDDVYRGLNVL 690
>gi|307103643|gb|EFN51901.1| hypothetical protein CHLNCDRAFT_27382 [Chlorella variabilis]
Length = 599
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI 446
Y+PML+PP+ W N GGH L + VMR G+R Q+E +
Sbjct: 9 YLPMLIPPVPWLRNNLGGHLTLRNTVMRIRGSRLQQEML 47
>gi|159129951|gb|EDP55065.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus A1163]
Length = 1376
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 53/261 (20%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+Q+ + W
Sbjct: 488 -------NEAGTDSRRLKALKE-LLAGRKKKGGRAKWHALVQKMQKEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L+ LL E + PV + ++PAF H + GRR
Sbjct: 533 SPRVTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAY-----QITWGRR 585
Query: 384 YGVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + P + + + K GRH+ PM+ P W+G GG S ++RT
Sbjct: 586 TGYLHLHPAIVQIVAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRT- 639
Query: 438 GARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 640 -----------TPGESLQPTY 649
>gi|71002430|ref|XP_755896.1| mitochondrial DNA-directed RNA polymerase [Aspergillus fumigatus
Af293]
gi|66853534|gb|EAL93858.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus Af293]
Length = 1375
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 53/261 (20%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y Y L D +A +T+ ++ E ++V IG+ +++E ++ K
Sbjct: 430 YGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAEAALK-- 487
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPW 327
N DS L E L+ ++K R QK+Q+ + W
Sbjct: 488 -------NEAGTDSRRLKALKE-LLAGRKKKGGRAKWHALVQKMQKEDATIM-------W 532
Query: 328 GQDALVKVGCRLIQLLMETAYIQPPVD----QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
K+G L+ LL E + PV + ++PAF H + GRR
Sbjct: 533 SPRVTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAY-----QITWGRR 585
Query: 384 YGVIECDPLVRKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH 437
G + P + + + K GRH+ PM+ P W+G GG S ++RT
Sbjct: 586 TGYLHLHPAIVQIVAKEPTADLLGRHL-----PMVCKPRPWKGMKDGGFLLYQSDIVRT- 639
Query: 438 GARQQRETIKMTPRSQLEPVF 458
TP L+P +
Sbjct: 640 -----------TPGESLQPTY 649
>gi|89148154|gb|ABD62820.1| mitochondrial single-subunit RNA polymerase [Stygamoeba sp.
ruffled]
Length = 661
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIECDP----LVRKG-LEKTGRHMIIPYMPMLVPPLNWRG 420
AF HT TK R+ G I C P +R G L + H + +PM+VPP W
Sbjct: 55 AFKHTYTYTTK-----RKVGAITCAPSVLQTIRDGHLAQEANHARM--LPMVVPPKPWTA 107
Query: 421 YNRGGHFFLPSYVMRTHGARQQRETIKMT 449
+ GG+ + S VMR +R Q + + T
Sbjct: 108 PDVGGYLVVKSNVMRVRDSRLQWDMLSKT 136
>gi|438813|gb|AAA33587.1| mitochondrial RNA polymerase [Neurospora crassa]
gi|1589165|prf||2210334A cyt-5 gene
Length = 1422
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 538 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 593
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 594 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 650
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQVSRVL 464
V+R +G R+QR T R ++ VF+ VL
Sbjct: 651 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVL 684
>gi|164425173|ref|XP_962570.2| hypothetical protein NCU06308 [Neurospora crassa OR74A]
gi|157070818|gb|EAA33334.2| predicted protein [Neurospora crassa OR74A]
Length = 1443
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQVSRVL 464
V+R +G R+QR T R ++ VF+ VL
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVL 685
>gi|67477377|sp|P38671.2|RPOM_NEUCR RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
Length = 1423
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQVSRVL 464
V+R +G R+QR T R ++ VF+ VL
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVL 685
>gi|167524739|ref|XP_001746705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774975|gb|EDQ88601.1| predicted protein [Monosiga brevicollis MX1]
Length = 1253
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 27/125 (21%)
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP-PDIRP--AFVHTLKSFTKEALKG- 381
PW L+ G L++++++T+ G P D +P AF H ++ L G
Sbjct: 168 PWPIPVLLACGTSLLEVVLQTS-------STGHLPNHDKKPVAAFYHMMQ------LDGV 214
Query: 382 RRYGVIECDPLV--RKGLEKTGRHMIIP--------YMPMLVPPLNWRGYNRGGHFFLPS 431
+R G I C LV R + + R +P +PM +PP W +G + PS
Sbjct: 215 KRVGYIRCHKLVLDRVSGQASDRGSCVPSKVAIDASQLPMTIPPRPWTSVRKGAYLICPS 274
Query: 432 YVMRT 436
+MRT
Sbjct: 275 AIMRT 279
>gi|336471080|gb|EGO59241.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2508]
gi|350292162|gb|EGZ73357.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2509]
Length = 1416
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 535 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 590
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 591 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 647
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQVSRVL 464
V+R +G R+QR T R ++ VF+ VL
Sbjct: 648 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVL 681
>gi|238604555|ref|XP_002396229.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
gi|215468398|gb|EEB97159.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
Length = 184
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 362 DIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIP-YMPMLVPPLNWR 419
+++PAF H ++ + +G++ GVI +P V + K R + P ++PML+ P W
Sbjct: 2 EVQPAFYH---AYVHQ--RGQKLGVIRLNPTVSDRMSKDAVRETLHPRHLPMLIKPKPWL 56
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIK 447
YN GG+ + MR + +Q+ ++
Sbjct: 57 NYNEGGYMYNRVSAMRYKDSVEQQSYLR 84
>gi|346319151|gb|EGX88753.1| mitochondrial DNA-directed RNA polymerase, putative [Cordyceps
militaris CM01]
Length = 1392
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQP----PVDQLGDSPPDIRPAFVHTLKSFTKEAL 379
S+PW +VG L++ L+++A ++ P G+ +PAF H ++
Sbjct: 537 SQPWSMQIKAQVGAFLVKALIDSAKVKAIKRHPTS--GELVSQYQPAFTHI-----QQPR 589
Query: 380 KGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH- 437
KG++ G +I + LV + + + ++PM+V P WR N GG + V+R
Sbjct: 590 KGKKVGMLIMHNTLVEQLKREPLGDFLAKHLPMIVEPKPWRNMNDGGFLESKTSVIRVQP 649
Query: 438 GARQQR 443
G +QR
Sbjct: 650 GNVEQR 655
>gi|322694289|gb|EFY86123.1| DNA-directed RNA polymerase [Metarhizium acridum CQMa 102]
Length = 1414
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPP--DIRPAFVHTLKSFTKEALKGR 382
+PW +VG L++ L++ A+++ ++ P +PAF H ++ +G+
Sbjct: 562 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKEPISQKQPAFTHM-----QQPRRGK 616
Query: 383 RYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ GV+ + + + L+K G + I ++PM+V P WR N GG FL S
Sbjct: 617 KVGVLHFNSNLVQQLKKEPVGDY-IAKHLPMIVEPKPWRQLNEGG--FLDS 664
>gi|302902552|ref|XP_003048669.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
gi|256729603|gb|EEU42956.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
Length = 1342
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQP-PVDQLG-DSPPDIRPAFVHTLKSFTKEALKGR 382
K W +++G L++ LMETA + +QL + ++PAF H KG+
Sbjct: 500 KVWSTTVRIRIGSILVKSLMETAEVNVIKQNQLTREKISQVQPAFSH-----MHAMRKGK 554
Query: 383 RYGVIECDP-LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRTH 437
+ GV +P LV + + + ++PM+ P W+ N GG FL S V +++
Sbjct: 555 KIGVFALNPFLVEQFKREPVGDFLAKHLPMIAEPQPWKNMNTGG--FLQSKVSLVRIKSG 612
Query: 438 GARQQRETIKMTPRSQLEPVFQVSRVL 464
Q+ T R ++ VF+ VL
Sbjct: 613 DDEQKLYTKAAIQRGDMDQVFKGLDVL 639
>gi|224116154|ref|XP_002331975.1| predicted protein [Populus trichocarpa]
gi|222832099|gb|EEE70576.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 27/129 (20%)
Query: 1 MWRNLARQSSTR------NFKFSPSKVSQTTNFLKK------ITSLETQTLLDSSCPLLG 48
MWRN+A+Q++ + NF P +T +FL L+ +L ++S P L
Sbjct: 31 MWRNVAKQATLKTQSKSLNFPSFP----RTYSFLGASKEPIFFEKLKFHSLYNTS-PRLS 85
Query: 49 FRRTSFLSSQKSNLGQSNF-------TQSIYPFGVLTSRSYASAAEAIAS---ESELSGS 98
FR +S+ + +G+ +F + + G R Y S AEA++S E ++SG+
Sbjct: 86 FRAIGEISTHEDFMGKPSFIFLRNSDSTNGNRCGGFCPRGYVSVAEAVSSTDVEDDVSGA 145
Query: 99 EEVQELIDQ 107
+EV+EL+ +
Sbjct: 146 DEVRELLPE 154
>gi|400595675|gb|EJP63467.1| DNA-dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1393
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 140/361 (38%), Gaps = 45/361 (12%)
Query: 141 LKRRQIKIETEAWEQAAKEYQD--LLADMCEQKLAPNLPYVKSLFLGWFEP-LRDAIA-- 195
L+R I E W +K+ Q + + K +L S +L E ++D IA
Sbjct: 361 LERDSISAALEKWRSQSKQLQKVGITPGLTGSKKEGSLSSYTSSWLSAMEVRIQDEIAQV 420
Query: 196 -----KDQATAQDKWKHMTYAPYFNNL-PADMMAVITMHKL-VGLLMTNAGEVRVVQAAC 248
KD T +D + Y P+ PA + AV + L G L+ + + +
Sbjct: 421 DVSEGKDVKTERD-IERCIYGPFIRQADPARLAAVTILSTLNAGALLGVDKGIAIQKIIN 479
Query: 249 QIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK 308
I + + +Q K T ++ + N ++ + QE K+ S
Sbjct: 480 TIAKQAHEDIELQKKQKKTTRRRKVTYDASKAKPKEANSVPQITESQEATKRIEDSA--- 536
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPA 366
SKPW +VG L++ L+++A + G+ +PA
Sbjct: 537 ---------------SKPWSIQIKAQVGSFLLKALIDSAKVNVITRHPTTGERVSQYQPA 581
Query: 367 FVHTLKSFTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGG 425
F H ++ KG++ G +I + LV + + + ++PM+V P W+ + GG
Sbjct: 582 FTHI-----QQPRKGKKVGMLIMHNTLVEQLKREPMGDFLAKHLPMIVEPKPWKSMHHGG 636
Query: 426 HFFLPSYVMRTH-GARQQRETIKMTPR-SQLEPVFQVSRVLYSSIFYDLFNLYRLIINFL 483
+ V+R G +QR K ++ VF+ VL + + + R ++N +
Sbjct: 637 FLESKTSVIRVQPGNVEQRLYAKAAVECGDMKQVFKGLDVLGQTA----WQINRDVLNVM 692
Query: 484 M 484
M
Sbjct: 693 M 693
>gi|402076916|gb|EJT72265.1| hypothetical protein GGTG_09131 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1501
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 334 KVGCRLIQLLMETAYIQPPVD--QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDP 391
+VG L+Q +++TA I + + G + +PAFVH ++ +G++ GV+ +
Sbjct: 612 QVGAALLQAIIQTATITVVKEHPETGSLVSESQPAFVHN-----QQYKRGKKVGVLVVNK 666
Query: 392 LVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTH-GARQQR 443
+ + L++ R + ++PM+ P W ++RGG P+ ++R G R Q+
Sbjct: 667 TLVEMLKREPRADFLARHLPMVCEPEPWTRFDRGGFIESPAQMVRVKPGERDQK 720
>gi|432101125|gb|ELK29409.1| DNA-directed RNA polymerase, mitochondrial [Myotis davidii]
Length = 1219
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW +V++G +L ++L++T + + Q D+ I P H + +SF R
Sbjct: 554 QPWPLTVVVQLGKQLAEVLVQTVKMPSNLAQQQDTQKLI-PVLYHVYSFQSF-------R 605
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
+ G+++ P + L++T + + +PML PPL W + G P+ +MR+
Sbjct: 606 QIGILKPHPAFIQ-LQETAAERTMTFESAEVPMLCPPLPWTSPHSGAFLLSPTKLMRSLE 664
Query: 438 GARQQRETIKMTPRSQLEPVFQVSRVLYSSIFY---DLFNLYRLIINFLMCSFCGISS 492
G Q + ++ P ++L L + + + +L I N C G+ S
Sbjct: 665 GTIQHQRLLEGCPPTELHGALDALTQLGNCAWRVNGRVLDLVLTIFNAKGCPRLGVPS 722
>gi|296485392|tpg|DAA27507.1| TPA: CG4644-like [Bos taurus]
Length = 1224
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G +L ++L+ + P P + P H + +SF R
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRAVQM-PSSLAAPRGPSTLIPVLYHVYSFRSF-------R 600
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + E +I +PML PPL W + G P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 439 ARQQRETIKMTPRSQLE 455
+Q + ++ P ++L
Sbjct: 661 TQQHQLLLERCPPAELH 677
>gi|329663210|ref|NP_001192480.1| DNA-directed RNA polymerase, mitochondrial [Bos taurus]
Length = 1224
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW LV++G +L ++L+ + P P + P H + +SF R
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRAVQM-PSSLAAPRGPSTLIPVLYHVYSFRSF-------R 600
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P + E +I +PML PPL W + G P+ +MR+ G
Sbjct: 601 QIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEG 660
Query: 439 ARQQRETIKMTPRSQLE 455
+Q + ++ P ++L
Sbjct: 661 TQQHQLLLERCPPAELH 677
>gi|194759172|ref|XP_001961823.1| GF14737 [Drosophila ananassae]
gi|190615520|gb|EDV31044.1| GF14737 [Drosophila ananassae]
Length = 1362
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 57/381 (14%)
Query: 103 ELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----QAA 157
EL++ NE L S D G + L R Q+++E + + +
Sbjct: 468 ELLNHLNEH----LTSKKEPDYAIMNSKYGYTKEQLEQLARDQLQVELDGCITIKSIEKS 523
Query: 158 KEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK---HMTYAP 212
KE+ + A +C +KL L W + + AI +D T Q ++K +M Y
Sbjct: 524 KEFAN--AKLCREKL-------NDLEQTWRKQISAAIVRDLNTLRVQVRFKPHGYMNYYT 574
Query: 213 YFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
Y + I + +L L + V Q ++G+ ++ +I+ KK+N
Sbjct: 575 YLKTMDTSHFVDILIKELYKLAAGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KKQN 629
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDA 331
T + G+ D K Q+ ++ L+ +Q+ G + PW +
Sbjct: 630 GTLEKI-GEIYSSYCDIWDSGKTQDNTRQAWQRLVHEQR---TSGPSMDQPEV-PWPSNV 684
Query: 332 LVKVGCRLIQLLMETAYIQPPV------DQLGDSPPDIRPAFVHTLKS---FTKEALKGR 382
L VG L +LM I + + P ++ PAF ++ KE +K
Sbjct: 685 LTGVGRFLYNILMRDIKIDSHLMRTKSKSKTASQPQNLLPAFYTLFRNQGRLVKEEVKPH 744
Query: 383 RYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT-H 437
P++ + L + R + + +PML PP W + GG+ S ++R H
Sbjct: 745 --------PVLARLL-RASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPH 795
Query: 438 GARQQRETIKMTPRSQLEPVF 458
A QQ E I+ + QL P
Sbjct: 796 QAVQQWERIRASNPQQLYPAL 816
>gi|326633044|ref|YP_004306655.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
gi|301170517|emb|CBV65202.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
Length = 883
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 82/327 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLA-----------DMCEQKLAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + D + + LP + + WF+
Sbjct: 32 LAREQLALEHESYEMGEVRFRKMFERQLKAGEIADNDATKPLITTLLPKMIARINSWFKE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+ V A
Sbjct: 92 VQAKCGKRPTAFQ----------FLQGIKPEAIAYITIKTTLARL-TSMDNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q + +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVIEADMLSKGLLGGESWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHGAR 440
W + GG++ P ++RTH +
Sbjct: 277 PWTSISGGGYWANGRRPLALVRTHSKK 303
>gi|105922710|gb|ABF81432.1| TIR-NBS-TIR-TIR-WRKY type disease resistance protein [Populus
trichocarpa]
Length = 1251
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 381 GRRYGVIECDPLVRKGLEKTG-RHMIIPYM 409
++YGVI+CDPLV KGLEKTG R I P +
Sbjct: 16 AKKYGVIQCDPLVLKGLEKTGARETIEPAL 45
>gi|417406183|gb|JAA49758.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Desmodus rotundus]
Length = 1222
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW +V++G +L ++L++T + + Q + ++ P H + +SF R
Sbjct: 557 QPWPLAVVVQLGKQLAEVLVQTVKMPGHLAQRQGTH-NLIPVLYHVYSFRSF-------R 608
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
+ G+++ P ++ LE + +PML PPL W + G P+ +MR+ G
Sbjct: 609 QIGILKPHPAFKQLLETAAERTMTFEAAEVPMLCPPLPWTSPHSGAFLLSPTKLMRSVEG 668
Query: 439 ARQQRETIKMTPRSQLE 455
Q + ++ P + L
Sbjct: 669 TMQHQRLLESCPPTNLH 685
>gi|315046832|ref|XP_003172791.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311343177|gb|EFR02380.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1375
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 36/266 (13%)
Query: 210 YAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKST 267
Y P+ + +A +T+ ++G + ++ + +++ IG A+++E +++ +S
Sbjct: 443 YIPFLLAVGPSKLAAVTILSVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIVETTRRSA 502
Query: 268 KKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP- 326
++ +N E L K + + R ++ H +P
Sbjct: 503 IEEAQNEN------------------EVYYLNKTFRQMKVYNTTGKFRSYMQKHTKDQPP 544
Query: 327 --WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
W +K+G L +L TA I + PV + + PAF H + K
Sbjct: 545 VHWPASTEIKIGALLSSMLFSTAEIPTSHKDPVAETVTYA--MEPAFQHVY-----QLQK 597
Query: 381 GRRYGVIECDPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HG 438
G G ++ V + L K +++ ++PM+ P W +GG P+ V+RT H
Sbjct: 598 GHNVGYVQLHEKVVERLRKEPSGNLLAKHLPMVSTPRPWVSNTQGGFLTQPTQVVRTRHD 657
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVL 464
Q + + R L+ +++ +L
Sbjct: 658 DAQSQYLQAASDRGDLDELYKGLTIL 683
>gi|326678540|ref|XP_685138.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Danio rerio]
Length = 1248
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D PW +V++G L+ L++ IQ + + PA L R
Sbjct: 575 DDTPWPMILMVQLGSFLVDLMVHELKIQSNI---------LNPALEKKLIPILYHMYTFR 625
Query: 383 ---RYGVIECDPLVRKGL-EKTGRHMIIP--YMPMLVPPLNWRGYNRGGHFFLPSYVMR- 435
+ G I+ P++ + L E T + MPML PP+ W G + P+ +MR
Sbjct: 626 SNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRA 685
Query: 436 THGARQQRETIKMTPRSQLEPVF 458
+ GA Q + ++ T L V
Sbjct: 686 SDGAMQHQLLLEKTQEEDLHAVL 708
>gi|340508072|gb|EGR33869.1| hypothetical protein IMG5_034000 [Ichthyophthirius multifiliis]
Length = 926
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+PM+ PP W+ Y GG++ P+++MR ++ Q +++ T S++ + +
Sbjct: 295 LPMIYPPAKWQDYEMGGYYLRPTHLMRFEDSQLQEKSLFNTDLSKVYEILNI 346
>gi|332255805|ref|XP_003277019.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Nomascus
leucogenys]
Length = 1230
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+L S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPSSLDKLRRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 679 QHQELLETCPPTALH 693
>gi|380495438|emb|CCF32395.1| DNA-dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1400
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 26/121 (21%)
Query: 322 VDSKPWGQDALVKVGCRLIQLLMETAYIQ-----PPVDQLGDSPPDIRPAFVHTLKSFTK 376
V KPW KVG L+ L+ETA I+ P L +PAF H +
Sbjct: 539 VADKPWPVAVRAKVGAALLSALIETAKIKVVKEHPETKALVSQ---YQPAFSHVSR---- 591
Query: 377 EALKGRRYGVIECDPLVRKGL------EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
KG++ G+I L+ K L E G ++ ++PM+V P W+ +++GG FL
Sbjct: 592 -LKKGKKTGMI----LLNKELVNIMKREPQGDYL-AKHLPMVVEPEPWQAFDKGG--FLE 643
Query: 431 S 431
S
Sbjct: 644 S 644
>gi|347976143|ref|XP_003437401.1| unnamed protein product [Podospora anserina S mat+]
gi|170940259|emb|CAP65486.1| unnamed protein product [Podospora anserina S mat+]
Length = 1346
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 61/335 (18%), Positives = 128/335 (38%), Gaps = 69/335 (20%)
Query: 142 KRRQI--KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIA---- 195
+RR+I ++E + + A ++ M E L + P + + W L+ I+
Sbjct: 266 ERREIQSRLEKDTIDAAVDRWRKESQAMSEMGLGLSSPGLNARLFEWHTDLQRRISQEIK 325
Query: 196 ------KDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAA 247
K Q D PY D +A + + L+ L+ T + V + +
Sbjct: 326 LAVESEKRQKKTSDDLVRSQLTPYLLQSTPDRLAAVVILSLLSLVSTYGVDKGVPLTRVV 385
Query: 248 CQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIK 307
+ ++E + R+ +K+T+ + P+++ + Q+ +++ +L+K
Sbjct: 386 HHLASSVEEDIRV---YKATQ-----------------SIPKEMARTQKAREQKAKTLLK 425
Query: 308 KQKLQQVRGIVKGHVDSKP---------------------WGQDALVKVGCRLIQLLMET 346
K + +G + W K G L+ ++T
Sbjct: 426 VAKARDYYAAKRGGQEEPAQAANDGKVFSSDLPLPILEPRWPATTKTKFGALLLGAFLDT 485
Query: 347 AYI-----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG 401
A + P +L ++PAF H+ + +G++ GVI + + L+
Sbjct: 486 AKVTVVREHPETKELVSQ---MQPAFSHS-----TQLRRGKKVGVIVPNRALVDILKTEP 537
Query: 402 R-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMR 435
R ++ ++PM+V P W + +GG P+ V+R
Sbjct: 538 RVEVLARHLPMVVEPEPWTKWEKGGFIEYPTSVVR 572
>gi|408395694|gb|EKJ74870.1| hypothetical protein FPSE_04906 [Fusarium pseudograminearum CS3096]
Length = 1353
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W +VG LI+ L+ETA + + P+ + + ++PAF H KG+
Sbjct: 511 WSVQVRARVGSILIKSLIETAKVKVVREHPISK--ERISQVQPAFSHM-----HAPRKGK 563
Query: 383 RYGV--IECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ G+ I D + R E G + ++PM+ P WR N GG FL S ++T
Sbjct: 564 KVGMLFINADLVERLKREPMG-DFLAKHLPMVSEPQPWRRINEGG--FLSSKATLVRLKT 620
Query: 437 HGARQQRETIKMTPRSQLEPVFQVSRVL 464
Q+ T R ++ VF+ VL
Sbjct: 621 GDVEQRLYTKAAIKRGDMDQVFKGLDVL 648
>gi|46121275|ref|XP_385192.1| hypothetical protein FG05016.1 [Gibberella zeae PH-1]
Length = 1357
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 327 WGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
W +VG L++ L+ETA + + P+ + + I+PAF H KG+
Sbjct: 511 WSVQVRARVGSILVKSLIETAKVKVVREHPISK--ERISQIQPAFSHM-----HAPRKGK 563
Query: 383 RYGV--IECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYV----MRT 436
+ G+ I D + R E G + ++PM+ P WR N GG FL S ++T
Sbjct: 564 KVGMLFINADLVERLKREPMG-DFLAKHLPMVSEPQPWRRINEGG--FLSSKATLVRLKT 620
Query: 437 HGARQQRETIKMTPRSQLEPVFQVSRVL 464
Q+ T R ++ VF+ VL
Sbjct: 621 GDVEQRLYTKAAIKRGDMDQVFKGLDVL 648
>gi|260830109|ref|XP_002610004.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
gi|229295366|gb|EEN66014.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
Length = 804
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGR 382
D W + ++ +G L+ ++ I + + S + PA H +T +K
Sbjct: 130 DECAWPINLIINLGSLLVDAMVREVKIDNNLFR-KTSEQKLIPALYHM---YTYRNIK-- 183
Query: 383 RYGVIECDPLVRK---GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGA 439
+ G+I+ P++ + G + T +PML+PP+ W +GG P+ +MR++ A
Sbjct: 184 QVGIIKPHPMLVQLVEGAQDTSLVFDSSLLPMLMPPVPWSSVKKGGFLLSPTKLMRSNDA 243
Query: 440 RQQRE-TIKMTPRSQLEPVF 458
Q E ++ S+L P+
Sbjct: 244 TLQHELLLEKVGTSELYPIL 263
>gi|157823583|ref|NP_001100236.1| DNA-directed RNA polymerase, mitochondrial [Rattus norvegicus]
gi|149034664|gb|EDL89401.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 1203
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 646 TTQHQRLLERCPPAQLH 662
>gi|452824377|gb|EME31380.1| DNA-directed RNA polymerase, mitochondrial [Galdieria sulphuraria]
Length = 1125
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 63/338 (18%), Positives = 133/338 (39%), Gaps = 37/338 (10%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
++++E +++ +++LL ++ L + L L W PL AI ++Q + K
Sbjct: 273 ELRLEFACLQESLDRFRNLLETAVKRGDIGWLSPAQRLILSWLSPLAFAIKREQQRLKVK 332
Query: 205 WKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFF 264
+ L +A+IT+ + + L + + ++G+A++ + +
Sbjct: 333 ISLTKDESHLLRLEPAKLALITIQETLRLTVPRKEGYPYLSLCLEVGKAVQTQCNAEELE 392
Query: 265 KSTKKKNATDNNLEG-DSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVD 323
+ KK + E +++ + N L + E + + I +L Q++ ++K + +
Sbjct: 393 RLRKKLQYEQVHQETMENKQVDNTNTTLTESSESKESSNSFRI---RLHQLKKLLKRNEN 449
Query: 324 SKP-------------------WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR 364
K W + ++VG L+ +L++ A P L +
Sbjct: 450 DKNGHRPYINLFAYRLTGNAAFWDKLTTLRVGSYLVDMLLKNA---PTQQVLVRTKASSD 506
Query: 365 PAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYM-------PMLVPPLN 417
FV T + G++ C +V L R + P++ PM+V P
Sbjct: 507 SQFVSAFWHKTVRGNGNKLQGLVGCRDIVYDIL---SRDLSNPFLNPLPRLRPMVVVPKP 563
Query: 418 WRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQL 454
W G GG+ + S +MR H R Q ++ S++
Sbjct: 564 WTGPKTGGYLRIRSDLMRCEHSHRSQWNALRTANLSKV 601
>gi|395750053|ref|XP_003779053.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Pongo abelii]
Length = 1169
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK +I +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLIFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 679 QHQELLETCPPTALH 693
>gi|322708298|gb|EFY99875.1| DNA-directed RNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1326
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQ--LGDSPPDIRPAFVHTLKSFTKEALKGR 382
+PW +VG L++ L++ A+++ ++ + +PAF H ++ +G+
Sbjct: 482 EPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKQTISQKQPAFTHM-----QQPRRGK 536
Query: 383 RYGVIECDPLVRKGLEK--TGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS 431
+ GV+ + + + L+K G + I ++PM+V P WR N GG FL S
Sbjct: 537 KVGVLHYNSNLVQQLKKEPIGDY-IAKHLPMIVEPKPWRQLNEGG--FLDS 584
>gi|149034663|gb|EDL89400.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 1164
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 646 TTQHQRLLERCPPAQLH 662
>gi|300120043|emb|CBK19597.2| unnamed protein product [Blastocystis hominis]
Length = 595
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 398 EKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPV 457
+ G I Y PMLVPP W + GG + MRTHG++ Q + + ++ L V
Sbjct: 16 DSRGEISFIRYKPMLVPPRPWLSVDSGGFISQKTVFMRTHGSKLQTDCLY---QADLTSV 72
Query: 458 FQVSRVL 464
F+ +L
Sbjct: 73 FRSLNIL 79
>gi|149034662|gb|EDL89399.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1076
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + P + P H + +S+ R
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARHGAQNFIPVLYHVYSFRSY-------R 585
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 586 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEG 645
Query: 439 ARQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 646 TTQHQRLLERCPPAQLH 662
>gi|323512036|gb|ADX87497.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_B]
Length = 883
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|238883374|gb|EEQ47012.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1218
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 28/190 (14%)
Query: 290 KLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI 349
KL EK+K S++ + ++G V +++ DA +K+ +L++L++E +
Sbjct: 399 KLTTVIEKMKYSFPSVLSQHASPNLKGEVFQYIND-----DAYIKLTHQLVKLIIENCKV 453
Query: 350 ---QPPVDQLGDS----PPDIRPAFVHT-------LKSFTKEA-----LKGRRYGVIECD 390
++QL +S +I F+ + +F KE K + Y +++
Sbjct: 454 PITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIVKMH 513
Query: 391 PLVRKGLE--KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM 448
P + L+ K G H+ Y+PML PP W GG+ + + + T+ + Q +
Sbjct: 514 PYIELKLQSLKLGTHL--HYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRA 571
Query: 449 TPRSQLEPVF 458
R QL+ +
Sbjct: 572 GVRGQLDNAY 581
>gi|68469100|ref|XP_721337.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|68470125|ref|XP_720824.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|77022784|ref|XP_888836.1| hypothetical protein CaO19_6499 [Candida albicans SC5314]
gi|46442714|gb|EAL02001.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|46443252|gb|EAL02535.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|76573649|dbj|BAE44733.1| hypothetical protein [Candida albicans]
Length = 1218
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 28/190 (14%)
Query: 290 KLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI 349
KL EK+K S++ + ++G V +++ DA +K+ +L++L++E +
Sbjct: 399 KLTTVIEKMKYSFPSVLSQHASPNLKGEVFQYIND-----DAYIKLTHQLVKLIIENCKV 453
Query: 350 ---QPPVDQLGDS----PPDIRPAFVHT-------LKSFTKEA-----LKGRRYGVIECD 390
++QL +S +I F+ + +F KE K + Y +++
Sbjct: 454 PITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIVKMH 513
Query: 391 PLVRKGLE--KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKM 448
P + L+ K G H+ Y+PML PP W GG+ + + + T+ + Q +
Sbjct: 514 PYIELKLQSLKLGTHL--HYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRA 571
Query: 449 TPRSQLEPVF 458
R QL+ +
Sbjct: 572 GVRGQLDNAY 581
>gi|323512084|gb|ADX87544.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_A]
Length = 883
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|320593395|gb|EFX05804.1| mitochondrial DNA-directed RNA polymerase [Grosmannia clavigera
kw1407]
Length = 1496
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 333 VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRYGVIECD 390
KVG L+ +L+ETA + + P+ + +F++ + +G++ G++ +
Sbjct: 565 AKVGAALLSMLLETAKVTAVKEH-----PETKTLISQQQPAFSRLNQLKRGKKVGMLIAN 619
Query: 391 PLVRKGLEKTGR-HMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRE 444
P + + +++ R + ++PM+V P W + +GG P+ ++R +R+ ++
Sbjct: 620 PTLVELMKREPRADFLARHLPMVVEPAPWTRFYKGGFLESPAPLVRVKDSRKDQK 674
>gi|68299728|ref|YP_249577.1| RNA polymerase [Vibriophage VP4]
gi|66473267|gb|AAY46276.1| RNA polymerase [Vibriophage VP4]
Length = 883
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|74193237|dbj|BAE20618.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 398 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 450
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 451 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 510
Query: 440 RQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 511 TQHQRLLEQCPPAQLH 526
>gi|281416168|ref|YP_003347903.1| RNA polymerase [Vibrio phage N4]
gi|237701475|gb|ACR16468.1| RNA polymerase [Vibrio phage N4]
Length = 883
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|383389390|gb|AFH14406.1| RNA polymerase [Vibrio phage VP3]
Length = 883
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|323512181|gb|ADX87639.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2007_A]
Length = 883
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|327353367|gb|EGE82224.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1393
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 30/233 (12%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + D +A +T+ L + + V++ +G+AI +E + K
Sbjct: 444 SPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMYLGKAIYDEYLAMQLRELEK 503
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-- 326
K + P + +KL + T KK ++Q R I + +P
Sbjct: 504 K---------------SKSPRRTSALIDKLVHKGT---KKAQVQWQRIIARFEESQRPVD 545
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W K+G L +L+ TA + PV P +F + + +G R
Sbjct: 546 WSPVVQAKIGACLASMLLSTATV--PV---STKDPSTNRTQRTDQAAFRRVYQLERGFRV 600
Query: 385 GVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
G + D +V K + ++ ++PM+ PP W GG PS VMR
Sbjct: 601 GYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEYPSAVMRV 653
>gi|325171278|ref|YP_004251249.1| RNA polymerase [Vibrio phage ICP3]
gi|323511984|gb|ADX87446.1| RNA polymerase [Vibrio phage ICP3]
Length = 883
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|323512132|gb|ADX87591.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2008_A]
Length = 883
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNA 272
YF + + A I + + +L V V + A IG IE+E R
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILAKEES-VPVQRVAMAIGGNIEDEIRFGR---------- 152
Query: 273 TDNNLEGDSEPLTNDPEKLIKEQEK--LKKRVTSLIKKQKLQQVRGIV--KGHVDS--KP 326
+ ++ K KE+ K L KR + KK ++ V + KG ++S +
Sbjct: 153 -----------IRDEEIKHFKERVKPNLDKRNGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 327 WGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYG 385
W +D VG R I++L+E T +Q +++ PD +H + E L R +
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ--LERKFKGIPDKDHEALHLAPEYV-EKLTNRAHA 258
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF 427
+ P+ Y PM+V P W G GG++
Sbjct: 259 LAGISPM---------------YQPMIVKPKRWTGVQGGGYW 285
>gi|115388207|ref|XP_001211609.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
gi|114195693|gb|EAU37393.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
Length = 1382
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 45/191 (23%)
Query: 289 EKLIKEQEKLKKRVTSLIK------KQKLQQVR--GIVKGHVDSKP---WGQDALVKVGC 337
EK +++Q R +K KQK + R IV+ P W K+G
Sbjct: 483 EKTLQKQSGADARRVKAVKEMLAGRKQKDGRARWQNIVRSLEQEDPTVVWPPRVKAKIGA 542
Query: 338 RLIQLLMETAYIQPPV----DQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLV 393
L+ LL E + PV Q ++PAF H+ + GR+ G I P +
Sbjct: 543 VLMSLLFEVG--KAPVAMQHSQSKKQEVTMQPAFQHSY-----QISWGRKGGYIHLHPEI 595
Query: 394 RKGLEKT------GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIK 447
K + K GRH+ PM+ P W G GG+F + ++R+
Sbjct: 596 VKIITKEPTADLLGRHL-----PMICKPKPWGGMKDGGYFLYQNNIVRS----------- 639
Query: 448 MTPRSQLEPVF 458
TP L+P +
Sbjct: 640 -TPGETLQPSY 649
>gi|121483706|gb|ABM54185.1| mitochondrial RNA polymerase [Paracentrotus lividus]
Length = 1421
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 324 SKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKG 381
+K W L+ +G L L++ I + I PA H T +SF
Sbjct: 750 AKTWPTGLLIGIGTLLADLMLREIKIDANMHNNKLEKQWI-PALYHMYTYRSF------- 801
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT- 436
+ G I+ P + L +T + + + +PM+ PP+ W G + + +MR+
Sbjct: 802 KHVGFIKPHPTL-VDLFQTAKDPNLEFDTNMLPMMTPPIPWTSVKFGAYPLSSTKIMRSK 860
Query: 437 HGARQQRETIKMTPRSQLEPVFQVSRVLYS 466
GA Q +E ++ TP +L P+ L S
Sbjct: 861 DGANQHQEVLEKTPSQELYPILDALNQLSS 890
>gi|261193289|ref|XP_002623050.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239588655|gb|EEQ71298.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239614020|gb|EEQ91007.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
ER-3]
Length = 1382
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 30/233 (12%)
Query: 211 APYFNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTK 268
+PY + D +A +T+ L + + V++ +G+AI +E + K
Sbjct: 444 SPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMYLGKAIYDEYLAMQLRELEK 503
Query: 269 KKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP-- 326
K + P + +KL + T KK ++Q R I + +P
Sbjct: 504 K---------------SKSPRRTSALIDKLVHKGT---KKAQVQWQRIIARFEESQRPVD 545
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRY 384
W K+G L +L+ TA + PV P +F + + +G R
Sbjct: 546 WSPVVQAKIGACLASMLLSTATV--PV---STKDPSTNRTQRTDQAAFRRVYQLERGFRV 600
Query: 385 GVIEC-DPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
G + D +V K + ++ ++PM+ PP W GG PS VMR
Sbjct: 601 GYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEYPSAVMRV 653
>gi|325094325|gb|EGC47635.1| DNA-directed RNA polymerase [Ajellomyces capsulatus H88]
Length = 1397
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 24/190 (12%)
Query: 292 IKEQEKLKKRVTSLI--------KKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQ 341
++++ K K++++LI +K ++Q R I + +P W K+G L
Sbjct: 501 LEKKSKPTKKISALIDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLAS 560
Query: 342 LLMETAYIQPPVD--QLGDSPPDIRPAF--VHTLKSFTKEALKGRRYGVIEC-DPLVRKG 396
+L+ TA + P + + AF V+ L+ +G R G + D +V K
Sbjct: 561 MLLSTATVPVPTKDPKTNQQKQTDQAAFRRVYQLE-------RGFRVGYVHANDYIVEKL 613
Query: 397 LEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKM-TPRSQL 454
+ ++ ++PM+ PP W GG PS VMR G Q ++ R L
Sbjct: 614 RREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDL 673
Query: 455 EPVFQVSRVL 464
+ VF VL
Sbjct: 674 DTVFAGLTVL 683
>gi|154286378|ref|XP_001543984.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407625|gb|EDN03166.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1397
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 10/173 (5%)
Query: 298 LKKRVTSLIKKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQLLMETAYIQPPV-D 354
+ K V +K ++Q R I + +P W K+G L +L+ TA + P D
Sbjct: 515 IDKLVHKGTRKAQIQWRRIIARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKD 574
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIEC-DPLVRKGLEKTGRHMIIPYMPMLV 413
Q + A + + G R G + D ++ K + ++ ++PM+
Sbjct: 575 QKTNQQKQTDQAAFRRVYQLER----GFRVGYVHANDYIIEKLRREPLGELLAKHLPMVC 630
Query: 414 PPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKM-TPRSQLEPVFQVSRVL 464
PP W GG PS VMR G Q ++ R L+ VF VL
Sbjct: 631 PPRPWTSSRGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVL 683
>gi|26351727|dbj|BAC39500.1| unnamed protein product [Mus musculus]
Length = 1207
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 649 TQHQRLLEQCPPAQLH 664
>gi|281332113|ref|NP_766139.2| DNA-directed RNA polymerase, mitochondrial precursor [Mus musculus]
gi|50401559|sp|Q8BKF1.1|RPOM_MOUSE RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|26343407|dbj|BAC35360.1| unnamed protein product [Mus musculus]
gi|74185846|dbj|BAE32793.1| unnamed protein product [Mus musculus]
gi|84570033|gb|AAI10698.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|109734947|gb|AAI17941.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|148699719|gb|EDL31666.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Mus
musculus]
Length = 1207
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 649 TQHQRLLEQCPPAQLH 664
>gi|240274975|gb|EER38490.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces capsulatus
H143]
Length = 1265
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 292 IKEQEKLKKRVTSLI--------KKQKLQQVRGIVKGHVDSKP--WGQDALVKVGCRLIQ 341
++++ K K++++LI +K ++Q R I + +P W K+G L
Sbjct: 388 LEKKSKPTKKISALIDKLVHKGTRKAQVQWRRIIARFEQSQRPVDWSPVVQAKIGACLAS 447
Query: 342 LLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTK--EALKGRRYGVIEC-DPLVRKGLE 398
+L+ TA + P P +F + + +G R G + D +V K
Sbjct: 448 MLLSTATVPVPTKD-----PKTNQQKQTDQAAFRRVYQLERGFRVGYVHANDYIVEKLRR 502
Query: 399 KTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKM-TPRSQLEP 456
+ ++ ++PM+ PP W GG PS VMR G Q ++ R L+
Sbjct: 503 EPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQLSYVETAAARGDLDT 562
Query: 457 VFQVSRVL 464
VF VL
Sbjct: 563 VFAGLTVL 570
>gi|402903464|ref|XP_003914585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Papio
anubis]
Length = 1226
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVD-QLGDSPPDIRPAFVHTLKSFTKEALKGRR 383
+PW +++G +L ++L++ + +D Q G S + P H SF ++
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLDSQHGSS--RLVPVLYHVY-SFRNV----QQ 610
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P + LE + +PML PPL W + G P+ +MRT GA
Sbjct: 611 IGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGA 670
Query: 440 RQQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 671 TQHQELLETCPPAALH 686
>gi|148699721|gb|EDL31668.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_c [Mus
musculus]
Length = 1166
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 649 TQHQRLLEQCPPAQLH 664
>gi|148699720|gb|EDL31667.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Mus
musculus]
Length = 1078
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVH--TLKSFTKEALKGR 382
+PW L+++G +L +LL++ + + + I P H + +S+ R
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSI-PVLYHVYSFRSY-------R 587
Query: 383 RYGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THG 438
+ G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 439 ARQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 648 TTQHQRLLEQCPPAQLH 664
>gi|71052166|gb|AAH98387.1| Polymerase (RNA) mitochondrial (DNA directed) [Homo sapiens]
Length = 1230
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHHSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 679 QHQELLETCPPTALH 693
>gi|378406358|gb|AFB82771.1| RNA polymerase [Vibrio phage phi-A318]
Length = 928
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 41/250 (16%)
Query: 240 EVRVVQAACQIGEAIENEAR-----------IQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
E+ A IG IE+E R IQ+ +S KK+N+ + D
Sbjct: 103 EITAQNLANNIGRRIEDEVRFTKLNNAAPKYIQAIKESLKKRNSNSYKFDHDVMVHAEKE 162
Query: 289 EKLIKE--------QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK---PWGQDALVKVGC 337
KL+ + +EKL+ I K Q + + +D PW + ++++G
Sbjct: 163 LKLLADFQALLGAGEEKLEIMRLLSIDNDKYQHLLDKAEFAIDIDRWIPWSDNDVIQLGA 222
Query: 338 RLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVR--K 395
+LI++ + + L D P I K + ++ D L +
Sbjct: 223 KLIEIFGK--------NMLMDGQPLI-------AKQVNGQGRGKTTAKIVATDALETWIQ 267
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRG-YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQL 454
G ++ +M Y P +VPP W+ +N G H S + R ++ ++T R Q+
Sbjct: 268 GYKEVVGNMSPAYEPCVVPPKEWKSPFNGGYHSKEVSSNLPIAKVRDKKHLRRLT-RKQM 326
Query: 455 EPVFQVSRVL 464
V+Q L
Sbjct: 327 PKVYQALNAL 336
>gi|194380978|dbj|BAG64057.1| unnamed protein product [Homo sapiens]
Length = 927
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLAPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 679 QHQELLETCPPTALH 693
>gi|62089426|dbj|BAD93157.1| DNA-directed RNA polymerase variant [Homo sapiens]
Length = 1072
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 407 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 460
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 461 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 520
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 521 QHQELLETCPPTALH 535
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,267,165,586
Number of Sequences: 23463169
Number of extensions: 297327864
Number of successful extensions: 909470
Number of sequences better than 100.0: 426
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 908696
Number of HSP's gapped (non-prelim): 514
length of query: 492
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 345
effective length of database: 8,910,109,524
effective search space: 3073987785780
effective search space used: 3073987785780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)