BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011172
(492 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana
sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/456 (57%), Positives = 320/456 (70%), Gaps = 19/456 (4%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHK + + G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQ
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/495 (53%), Positives = 329/495 (66%), Gaps = 48/495 (9%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHK--LVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHK + + G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQV 460
+K P+ QLEPVFQ
Sbjct: 468 VKRVPKKQLEPVFQA 482
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis
thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/473 (51%), Positives = 317/473 (67%), Gaps = 22/473 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVL 464
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ L
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTL 460
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/484 (50%), Positives = 317/484 (65%), Gaps = 27/484 (5%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGSEEVQELID 106
L + + +SYAS AEA+A +E ++S +EVQEL+
Sbjct: 95 LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLT 154
Query: 107 QFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLAD 166
+ ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL D
Sbjct: 155 ELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFD 211
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA Y LPADMMAVIT
Sbjct: 212 MCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVIT 271
Query: 227 MHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT + G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +
Sbjct: 272 MHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV 331
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI+LL+
Sbjct: 332 T-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLL 384
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
+TAYIQPP +QL PPDIRPAF+H++++ KE RRYG+I+CD LV KGLE+T RH
Sbjct: 385 QTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARH 444
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRV 463
M+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+
Sbjct: 445 MVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDT 504
Query: 464 LYSS 467
L S+
Sbjct: 505 LGST 508
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/485 (51%), Positives = 317/485 (65%), Gaps = 44/485 (9%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 -------TSFLSSQK-SNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMT--NAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT + G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQV 460
PVF+
Sbjct: 496 PVFEA 500
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/480 (49%), Positives = 302/480 (62%), Gaps = 34/480 (7%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ L S+
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/329 (51%), Positives = 232/329 (70%), Gaps = 16/329 (4%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+R+Q++ ++ P Q++ V++ L S+
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGST 465
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/329 (51%), Positives = 232/329 (70%), Gaps = 16/329 (4%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+R+Q++ ++ P Q++ V++ L S+
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGST 465
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 341 bits (874), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 172/329 (52%), Positives = 231/329 (70%), Gaps = 16/329 (4%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 204
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 205 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 264
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + KE L+KRV SLIK+ ++ +VR ++K
Sbjct: 265 HNFLEKTKK---LQKHMTG-----AQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS 316
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+Q PVDQ D+PPDIRPAF H K T++ K
Sbjct: 317 E-EPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGK 375
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 376 NIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 435
Query: 439 ARQQRETIKMTPRSQLEPVFQVSRVLYSS 467
+R+Q++ ++ P Q++ V++ L S+
Sbjct: 436 SRRQQDAVRGVPTKQMQQVYEALDTLGST 464
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis
thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 233/348 (66%), Gaps = 20/348 (5%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQV 460
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEA 473
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 52/352 (14%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
RV +G + E E + + K K+ D + + L NDP K
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKD---KKRLKELFNDPRKF----- 443
Query: 297 KLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 444 ------RQAVKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTY-----QYSNGRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQ 459
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFK 600
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIK 447
RT + +Q +K
Sbjct: 699 RTKDSPEQVAYLK 711
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1
SV=2
Length = 883
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEA---RIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EA RI+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTH 437
W G GG++ P ++RTH
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTH 300
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
SV=1
Length = 884
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 74/323 (22%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L + Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAKEQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPSAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEAKHF------KKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR 440
GG++ P ++RTH +
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKK 304
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQVSRVL 464
V+R +G R+QR T R ++ VF+ VL
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVL 685
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus
GN=Polrmt PE=2 SV=1
Length = 1207
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLE 455
Q + ++ P +QL
Sbjct: 649 TQHQRLLEQCPPAQLH 664
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens
GN=POLRMT PE=1 SV=2
Length = 1230
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLE 455
Q +E ++ P + L
Sbjct: 679 QHQELLETCPPTALH 693
>sp|Q07404|UREH_BACSB Urease accessory protein UreH OS=Bacillus sp. (strain TB-90)
GN=ureH PE=3 SV=1
Length = 228
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 175 NLPYVKSLFLGWFEPLRDAIAK---DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLV 231
+PYVKSLF+G L + A +T + W+ + Y +F ++ +++ L+
Sbjct: 123 GIPYVKSLFIGIIHGLAGSAAMVLLTMSTVEKAWEGLLYILFFG--AGTVLGMLSFTTLI 180
Query: 232 GLLMT-NAGEVRVVQAACQIGEAIENEARIQSFF 264
G+ T +A ++R+ A QI I I +
Sbjct: 181 GIPFTLSARKIRIHNAFIQITGFISTVFGIHYMY 214
>sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2 SV=1
Length = 1949
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 240 EVRVVQAACQIGEAIENEARIQSFFKSTK---KKNATDNNLEGDSEPLT---NDPEKLIK 293
++R++ ++C + A+E E + ++F S + +K A + LE D+E L+ N+ E+L
Sbjct: 1047 DLRLINSSCLVRTALEQELGLAAYFVSNEVPLEKGARNEALESDAEKLSSTDNEDEELGT 1106
Query: 294 EQEKLKKR 301
E +KR
Sbjct: 1107 EGSTSEKR 1114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,286,660
Number of Sequences: 539616
Number of extensions: 7192457
Number of successful extensions: 23866
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 23802
Number of HSP's gapped (non-prelim): 54
length of query: 492
length of database: 191,569,459
effective HSP length: 122
effective length of query: 370
effective length of database: 125,736,307
effective search space: 46522433590
effective search space used: 46522433590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)