Query 011172
Match_columns 492
No_of_seqs 177 out of 350
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 100.0 5.8E-52 2E-56 466.2 28.0 311 136-492 26-354 (883)
2 3spa_A Mtrpol, DNA-directed RN 100.0 1.1E-48 3.7E-53 440.9 17.0 329 128-492 290-637 (1134)
3 3bhw_A Uncharacterized protein 22.8 61 0.0021 30.1 3.7 53 321-400 136-188 (209)
4 3ghg_B Fibrinogen beta chain; 12.0 1.5E+02 0.0051 31.0 3.7 46 66-112 64-111 (461)
5 4ev0_A Transcription regulator 11.9 6.1E+02 0.021 21.7 7.6 82 145-226 131-212 (216)
6 3viq_A SWI5-dependent recombin 11.5 6.1E+02 0.021 21.4 6.9 61 140-202 4-64 (122)
7 1lqb_D HIF-1 alpha, hypoxia-in 9.7 74 0.0025 20.9 0.3 9 403-411 12-20 (34)
8 1rfy_A TRAM protein;, transcri 8.5 83 0.0028 26.0 0.2 30 439-468 66-97 (102)
9 2hjd_A Quorum-sensing antiacti 8.4 83 0.0028 26.0 0.2 30 439-468 66-97 (102)
10 3f2e_A SIRV coat protein; four 8.0 2.6E+02 0.0089 22.0 2.9 28 457-484 39-82 (100)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=100.00 E-value=5.8e-52 Score=466.18 Aligned_cols=311 Identities=21% Similarity=0.319 Sum_probs=245.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-ccCccccccc
Q 011172 136 AKYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPY 213 (492)
Q Consensus 136 ~~~~-~l~~rQl~LE~ea~e~A~er~r~~~e~~~~~g~a~~l~~~k~Ll~~W~~~L~~aI~~e~~~~~~-~~~r~~y~py 213 (492)
+.|+ .|++||++||+++++.|++||++.+++++++|.++++|++++|+.+|+++|+++|+++++.... .+.++.|+||
T Consensus 26 ~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~ 105 (883)
T 1msw_D 26 DHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQF 105 (883)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 3455 5689999999999999999999999999999999999999999999999999999999988763 4468999999
Q ss_pred cccCChhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCCCCCCCCCChHHHHH
Q 011172 214 FNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293 (492)
Q Consensus 214 L~~L~~d~LA~Iti~~~l~~l~~~~~~~~v~~la~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~d~~~~~~ 293 (492)
|++||+|++|+|||+++|++++++ +++++++++.+||++||+|++++++.+.+++.+.+..
T Consensus 106 L~~l~~e~lA~iti~~~l~~~~~~-~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~~------------------ 166 (883)
T 1msw_D 106 LQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV------------------ 166 (883)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHC-SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT------------------
T ss_pred HHhCCHHHHHHHHHHHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------------------
Confidence 999999999999999999999873 5789999999999999999999999887765443211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCce
Q 011172 294 EQEKLKKRVTSLIKKQKLQQVRGIV-KG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAF 367 (492)
Q Consensus 294 ~~~~lrk~~~~l~k~~k~~~~~~~~-~~----~~~~~~W~~~~~~kVGs~Li~lLiet-akI~v~~~~~~~~~~~~~PAF 367 (492)
.+.++++.+...++...+.+.... .. .+++.+|+..++++||++|+++|+++ +.+++....
T Consensus 167 -~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~~------------ 233 (883)
T 1msw_D 167 -EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQN------------ 233 (883)
T ss_dssp -SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred -HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeccc------------
Confidence 122333333222222223333211 11 36789999999999999999999996 565443211
Q ss_pred EEEEeeccccccCCeEEEEEEeCHHHHHHHHhhcc--cccCC-CCceeeCCCCCCCCCCcccccc---ccchhcccCcHH
Q 011172 368 VHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGR--HMIIP-YMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQ 441 (492)
Q Consensus 368 ~H~~~~~~~~~~~gkk~GvI~~hp~l~~~l~~~~~--~~~~p-~LPMLvPPkPWts~~~GGYL~~---~s~lmR~~g~~~ 441 (492)
...+++++|+|+|||.+++.+.+... ..+.| +|||||||+||+++++||||.. +..+||+++
T Consensus 234 ---------~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~--- 301 (883)
T 1msw_D 234 ---------AGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS--- 301 (883)
T ss_dssp ----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS---
T ss_pred ---------cCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC---
Confidence 01126889999999999999987532 23455 9999999999999999999975 345667653
Q ss_pred HHHHHHcCCCCCchhHHHHHHHhcCCCceecHHHHHHHHHHHh----ccCCCCCC
Q 011172 442 QRETIKMTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLIINFLM----CSFCGISS 492 (492)
Q Consensus 442 Q~~~l~~a~~~qL~~Vf~aLN~LGstpWrIN~~VLdvI~~~~~----~~~l~IP~ 492 (492)
+.++++.++++|+.||+|||+||+|||+||.+||++|.++ | ++++|||+
T Consensus 302 -~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~-~~~~g~~~~~ip~ 354 (883)
T 1msw_D 302 -KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVI-TKWKHCPVEDIPA 354 (883)
T ss_dssp -TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHH-TTCSSCSSTTCCC
T ss_pred -HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHH-HhhcCCcccCCCC
Confidence 3456656678999999999999999999999999998765 5 68899985
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=440.90 Aligned_cols=329 Identities=16% Similarity=0.220 Sum_probs=241.7
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 011172 128 KKGTGMGTAKYYMLKRRQIKIETEAWE--QAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-- 203 (492)
Q Consensus 128 ~~~~~~~~~~~~~l~~rQl~LE~ea~e--~A~er~r~~~e~~~~~g~a~~l~~~k~Ll~~W~~~L~~aI~~e~~~~~~-- 203 (492)
..+.+++..+.++++++|+.+|..+.- .++++.....+++.+. ...+.++..+|...|..+|++++.....
T Consensus 290 ~pk~~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~-----r~~l~~~~~~w~~~l~~~~~~~~~~~~~~~ 364 (1134)
T 3spa_A 290 YPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHA-----RKTLKTLRDQWEKALCRALRETKNRLEREV 364 (1134)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346778999999999999999987742 1222211111111111 1347888899999999999998876543
Q ss_pred ccCccccccccccCChhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCCCCCCCCC
Q 011172 204 KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEP 283 (492)
Q Consensus 204 ~~~r~~y~pyL~~L~~d~LA~Iti~~~l~~l~~~~~~~~v~~la~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~ 283 (492)
...+..++|||+.||.++++.|.|.++..+. .+ |.+++.++..||..|++++.+++..+...
T Consensus 365 ~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l~-~~--g~~~~~~~~~lg~~~~~~~~~~~~~~~~~--------------- 426 (1134)
T 3spa_A 365 YEGRFSLYPFLCLLDEREVVRMLLQVLQALP-AQ--GESFTTLARELSARTFSRHVVQRQRVSGQ--------------- 426 (1134)
T ss_dssp HTTCCCSTGGGGSSCHHHHHHHHHHHHHHCC-TT--CEEHHHHHHHHHHHHHHHHHHHHHHHHTH---------------
T ss_pred ccCCCccccceeeCCHHHHHHHHHHHHHHhc-cc--CccHHHHHHHHHHHHHHHHHHHHHHhhhH---------------
Confidence 4568899999999999999998777776654 33 57899999999999999999987554321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhCC-CCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCC
Q 011172 284 LTNDPEKLIKEQEKLKKRVTSLIK-------KQKLQQVRGIVKGH-VDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ 355 (492)
Q Consensus 284 l~~d~~~~~~~~~~lrk~~~~l~k-------~~k~~~~~~~~~~~-~~~~~W~~~~~~kVGs~Li~lLietakI~v~~~~ 355 (492)
+.+..+.++++..-+.. ...++.|+.+.... ..+.+|+..++++||++|+++|+++++|++...+
T Consensus 427 -------~~~~~~~y~~y~~~~~~~~~~~~~~~~r~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~~~~i~~~~~~ 499 (1134)
T 3spa_A 427 -------VQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDK 499 (1134)
T ss_dssp -------HHHHHHHHHHHGGGTCSSCCCSSCCCHHHHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHHHCBCCC----
T ss_pred -------HHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhCCcccCCCCCCCHHHHHHHHHHHHHHHHhhccCCccccC
Confidence 01111222222211100 01346677766542 4578999999999999999999999999987655
Q ss_pred CCCCCCCccCceEEEEeeccccccCCeEEEEEEeCHHHHHHHHhhccc--ccCC-CCceeeCCCCCCCCCCccccccccc
Q 011172 356 LGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH--MIIP-YMPMLVPPLNWRGYNRGGHFFLPSY 432 (492)
Q Consensus 356 ~~~~~~~~~PAF~H~~~~~~~~~~~gkk~GvI~~hp~l~~~l~~~~~~--~~~p-~LPMLvPPkPWts~~~GGYL~~~s~ 432 (492)
+ ++....+|||+|+|++. +|+++|+|+|||.+++++++...+ .+.| ||||||||+||+++++||||+.+++
T Consensus 500 ~-~~~~~~~paf~h~y~~~-----~~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~t~ 573 (1134)
T 3spa_A 500 P-HRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTK 573 (1134)
T ss_dssp --------CBSEEEEEC---------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEETTEEESSSSCCC
T ss_pred C-CCCcccccceEEEEEEE-----cCcEEEEEEECHHHHHHHHhccccccccCcCCCCcccCCCCCCCCCCceeEecCcc
Confidence 4 34467899999999874 689999999999999999986544 3445 9999999999999999999999999
Q ss_pred hhcccC-cHHHHHHHHcCCCCCchhHHHHHHHhcCCCceecHHHHHHHHHHHh---ccCCCCCC
Q 011172 433 VMRTHG-ARQQRETIKMTPRSQLEPVFQVSRVLYSSIFYDLFNLYRLIINFLM---CSFCGISS 492 (492)
Q Consensus 433 lmR~~g-~~~Q~~~l~~a~~~qL~~Vf~aLN~LGstpWrIN~~VLdvI~~~~~---~~~l~IP~ 492 (492)
+||+++ ..++..++++.++++|++||+|||+||+|||+||.+|||+|.++.+ ++++|||+
T Consensus 574 ~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~ 637 (1134)
T 3spa_A 574 LMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPA 637 (1134)
T ss_dssp SBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCC
T ss_pred eeecCCChHHHHHHHHhccccccHHHHHHHHHHhCCCcEecHHHHHHHHHHHHhcCCCcCCCCC
Confidence 999964 4455556666678999999999999999999999999999977633 47899985
No 3
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.50A {Magnetospirillum magneticum}
Probab=22.85 E-value=61 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCceEEEEeeccccccCCeEEEEEEeCHHHHHHHHhh
Q 011172 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKT 400 (492)
Q Consensus 321 ~~~~~~W~~~~~~kVGs~Li~lLietakI~v~~~~~~~~~~~~~PAF~H~~~~~~~~~~~gkk~GvI~~hp~l~~~l~~~ 400 (492)
+.....|+..++-|+++.+..+|.++..+.-. +++++--+.++|.+...|...
T Consensus 136 ~~~v~~wSdsT~kKl~q~~~~~L~eaGlL~~~---------------------------~~~~I~~~~l~~~v~~~L~~~ 188 (209)
T 3bhw_A 136 DPLMPVWQDSTANKLADCVYRILVEVGYITDS---------------------------KTYRLKSVRISGEVMSYLREN 188 (209)
T ss_dssp CTTC----CHHHHHHHHHHHHHHHHHTCCC-------------------------------CBCCCCCCCHHHHHHHHHT
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHcCCcCCc---------------------------cCCCccccccCHHHHHHHHHc
Confidence 35677999999999999999999999999431 223444456789999999875
No 4
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=11.97 E-value=1.5e+02 Score=30.98 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=27.2
Q ss_pred CCccCCCCcccccc--ccccchhhhhhcccccCchHHHHHHHHHHHhhc
Q 011172 66 NFTQSIYPFGVLTS--RSYASAAEAIASESELSGSEEVQELIDQFNEKG 112 (492)
Q Consensus 66 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (492)
||.+....||++|+ .+.+..-...+.+ ...++.+++..|+++....
T Consensus 64 ~c~~~~~~fG~yCPTtCglad~L~kye~~-V~~dl~~Le~~l~~isn~T 111 (461)
T 3ghg_B 64 GCLHADPDLGVLCPTGCQLQEALLQQERP-IRNSVDELNNNVEAVSQTS 111 (461)
T ss_dssp CCBCSSTTTCBCEECHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CccccCcccCCcCCCcchHHHHHHhcccc-hhhHHHHHHHHHHHHHhhh
Confidence 68888889999988 4444432222221 1125566777777765544
No 5
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=11.93 E-value=6.1e+02 Score=21.70 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccccCChhHHHH
Q 011172 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAV 224 (492)
Q Consensus 145 Ql~LE~ea~e~A~er~r~~~e~~~~~g~a~~l~~~k~Ll~~W~~~L~~aI~~e~~~~~~~~~r~~y~pyL~~L~~d~LA~ 224 (492)
+..++.-+...+.+|+...+..+.+.|.....+.-+.-+.+...--++.+.+.+...++.+--..-...+..++++.|..
T Consensus 131 ~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 210 (216)
T 4ev0_A 131 DLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEE 210 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHH
Confidence 44455555566778888777776665543334444566666664444555554544444332112234577788888765
Q ss_pred HH
Q 011172 225 IT 226 (492)
Q Consensus 225 It 226 (492)
++
T Consensus 211 ~a 212 (216)
T 4ev0_A 211 IA 212 (216)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=11.55 E-value=6.1e+02 Score=21.35 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011172 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202 (492)
Q Consensus 140 ~l~~rQl~LE~ea~e~A~er~r~~~e~~~~~g~a~~l~~~k~Ll~~W~~~L~~aI~~e~~~~~ 202 (492)
.|.++|++|+.+- .+.++=-+.++.+.+........-+..|+..|-..=..++.+-+....
T Consensus 4 ~L~~~~~~L~~~i--~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~ 64 (122)
T 3viq_A 4 QLLSRRLKLEKEV--RNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMA 64 (122)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666542 222222222222222222234556899999999999988887655543
No 7
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=9.69 E-value=74 Score=20.90 Aligned_cols=9 Identities=56% Similarity=1.350 Sum_probs=6.8
Q ss_pred cccCCCCce
Q 011172 403 HMIIPYMPM 411 (492)
Q Consensus 403 ~~~~p~LPM 411 (492)
+|++||.||
T Consensus 12 emLAPYIpM 20 (34)
T 1lqb_D 12 EMLAPYIPM 20 (34)
T ss_pred hHhcCcccc
Confidence 467788887
No 8
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=8.47 E-value=83 Score=26.00 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=21.2
Q ss_pred cHHHHHHHHcC--CCCCchhHHHHHHHhcCCC
Q 011172 439 ARQQRETIKMT--PRSQLEPVFQVSRVLYSSI 468 (492)
Q Consensus 439 ~~~Q~~~l~~a--~~~qL~~Vf~aLN~LGstp 468 (492)
..+|.+|+.+. ...||..|=.-|++||-+|
T Consensus 66 ~~lh~eYi~~~ie~~AQq~~lstli~~LGyvP 97 (102)
T 1rfy_A 66 GPQHIRYIEASIEMHAQMSALNTLISILGFIP 97 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667777653 2357777888888888887
No 9
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=8.43 E-value=83 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=20.6
Q ss_pred cHHHHHHHHcC--CCCCchhHHHHHHHhcCCC
Q 011172 439 ARQQRETIKMT--PRSQLEPVFQVSRVLYSSI 468 (492)
Q Consensus 439 ~~~Q~~~l~~a--~~~qL~~Vf~aLN~LGstp 468 (492)
..+|.+|+.+. ...||..|=.-|++||-+|
T Consensus 66 ~~lh~eYi~~~ie~~AQq~~lstli~~LGyvP 97 (102)
T 2hjd_A 66 GEQHLEYIEAMIEMHAQMSAVNTLVGLLGFIP 97 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667777653 2357777778888888877
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=8.03 E-value=2.6e+02 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.053 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCC----------------ceecHHHHHHHHHHHh
Q 011172 457 VFQVSRVLYSSI----------------FYDLFNLYRLIINFLM 484 (492)
Q Consensus 457 Vf~aLN~LGstp----------------WrIN~~VLdvI~~~~~ 484 (492)
|-.|||-||+-| +.-|+.|||.|.+.+-
T Consensus 39 varalnr~g~gpalvnminglkayyisafnanp~vldavtniit 82 (100)
T 3f2e_A 39 VARALNRLGGGPALVNMINGLKAYYISAFNANPTVLDAVTDIIT 82 (100)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHhhhhHhhhHhhcCCcHHHHHHHHhhc
Confidence 555666666654 4469999999988754
Done!