Query 011174
Match_columns 492
No_of_seqs 142 out of 240
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 1E-179 3E-184 1398.9 35.7 432 6-443 1-443 (478)
2 PF06305 DUF1049: Protein of u 60.4 31 0.00068 27.2 6.0 47 17-63 18-64 (68)
3 PRK11677 hypothetical protein; 59.2 17 0.00037 33.9 4.8 44 16-63 2-45 (134)
4 COG1033 Predicted exporters of 56.7 22 0.00048 41.3 6.2 54 21-74 252-316 (727)
5 TIGR02976 phageshock_pspB phag 52.8 42 0.00091 28.5 5.7 28 16-43 3-30 (75)
6 PF07219 HemY_N: HemY protein 45.4 37 0.0008 29.7 4.5 46 13-58 13-65 (108)
7 TIGR03144 cytochr_II_ccsB cyto 39.4 1.1E+02 0.0024 30.3 7.4 30 51-80 142-171 (243)
8 TIGR03777 RPE4 Rickettsial pal 32.2 21 0.00046 25.9 0.7 10 326-335 23-32 (32)
9 PF01578 Cytochrom_C_asm: Cyto 31.5 1.3E+02 0.0029 28.7 6.3 30 51-80 116-145 (214)
10 TIGR00540 hemY_coli hemY prote 23.8 1.1E+02 0.0023 32.3 4.6 38 13-50 38-82 (409)
11 PRK10747 putative protoheme IX 22.7 1.1E+02 0.0024 32.2 4.3 38 13-50 38-82 (398)
12 PF12801 Fer4_5: 4Fe-4S bindin 22.6 1.2E+02 0.0027 22.4 3.5 24 16-39 2-25 (48)
13 TIGR00921 2A067 The (Largely A 22.6 2.9E+02 0.0063 31.2 7.9 57 18-74 620-686 (719)
14 PHA03105 EEV glycoprotein; Pro 22.4 92 0.002 30.3 3.3 33 19-51 9-41 (188)
15 PF06295 DUF1043: Protein of u 21.8 1.7E+02 0.0037 26.7 4.8 48 31-79 10-66 (128)
16 COG3105 Uncharacterized protei 21.1 1.8E+02 0.0039 27.5 4.8 61 15-79 6-75 (138)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-179 Score=1398.91 Aligned_cols=432 Identities=57% Similarity=1.051 Sum_probs=411.0
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 011174 6 SSSNSLEHTPTWVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQDALFEALQKLKEELMLLGFISLLLTVFQDVISHMCI 85 (492)
Q Consensus 6 ~~~~sLe~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICI 85 (492)
|+| |||+|||||||+||+|||++|+++||++|++||||+|++||+|+|||||+|+|||||||||||||++|++|+||||
T Consensus 1 e~r-sLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICI 79 (478)
T PF03094_consen 1 EGR-SLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICI 79 (478)
T ss_pred CCC-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeec
Confidence 456 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCccccccccccccccccccccC--CCcccccccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011174 86 PTYLASHMLPCKMNSVSHEKFSLGTINNRRQLLSE--DTSTEHCAKKGKTPLLSLEALHQLHIFIFVLAVTHVIFCATTM 163 (492)
Q Consensus 86 p~~~~~~~lPC~~~~~~~~~~~~~~~~~~RRlLa~--~~~~~~C~~~GkvpliS~e~LHQLHIFIFvLAv~HV~ys~~Tm 163 (492)
|++++++|+||+..++.+. ......+||+|+. ++++++|++||||||+|.|||||||||||||||+||+|||+||
T Consensus 80 p~~~~~~~lPC~~~~~~~~---~~~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm 156 (478)
T PF03094_consen 80 PSSYASTMLPCKPPEESSK---EGSSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTM 156 (478)
T ss_pred ChhHHhcccCCCCcccccc---cccchhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986432221 1111258899984 3457799988999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHhhhcC-CCCCCCCCCccccceechhhhhccccCCcCchHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 011174 164 VLAGAKIRQWKHWEDSVRNQ-PQLERDPTKETPRQHHFEFLNKRAIGYWRKAAVVSWLISFFKQFYGSVTKSDYISLRQG 242 (492)
Q Consensus 164 ~Lg~~Kir~Wk~WE~e~~~~-~~~~~dp~vr~~~~~qt~F~~~h~~~~w~~s~~l~Wi~cFfrQF~~SV~k~DYltLR~g 242 (492)
+||++|||+||+||+|++++ ++.++||+ |++++||++|+|+|+ ++|++++++.|++|||||||+||+|+||+|||+|
T Consensus 157 ~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~-r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~k~DYltLR~g 234 (478)
T PF03094_consen 157 LLGRAKIRRWKKWEDEAQTDEYQFSNDPR-RFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVTKSDYLTLRHG 234 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCcc-eeeeecccHHHHhhc-CCcccChhHHhHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999996 67788999 999999999999997 8899999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCchHHHHHHHHhhhccccccchhHHHHHHHHHHHhcccceeeeeehhhHHHH--------HHHHHHHHH
Q 011174 243 FIMAHCPTSTSFDFHKYMMRTLEWDFRKVVGIRWYLWLFLVLFLLLNIEGWHTYFWLAFLPLV--------LEHIITRLA 314 (492)
Q Consensus 243 FI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWlsfiPli--------Lq~IIt~lA 314 (492)
||++|+.++++|||||||+||||||||+||||||+||++||+|+|+|++|||+|||++|||++ ||+||++||
T Consensus 235 FI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma 314 (478)
T PF03094_consen 235 FITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMA 314 (478)
T ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred hHhcccccCCCCCccccCCCCccccCcchHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcceeccccccchhhhhhhhhhh
Q 011174 315 QDVDPKRRQGQDAGRVKPSDEYFWFQRPAIVLNLIHFILFQNSFEIAFVVWIWCTYGFQSCIMEKLGYIIPRLIIGAIVQ 394 (492)
Q Consensus 315 lei~e~~~~i~G~~~V~psD~lFWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~SC~~~~~~~ii~Rl~~Gv~vQ 394 (492)
+|++|++++++|+|+|+|+|++|||+||+|||+||||+|||||||||||+|+||+||++||||++.+++++|+++|+++|
T Consensus 315 ~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq 394 (478)
T PF03094_consen 315 LEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQ 394 (478)
T ss_pred HHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccceeeeeecCCcccccccchhHHHHHHHHHHhhhhcCCCCC
Q 011174 395 VLCSYSTLPLYAIVTQMGGKFKKGIFDDFVQSSLDVWLESSKSKGETSK 443 (492)
Q Consensus 395 ~lCSY~TLPLYALVTQMGs~~K~~if~e~v~~~l~~W~~~ak~~~~~~~ 443 (492)
++|||+|||||||||||||+||++||+|+|+++|++||++||||++.++
T Consensus 395 ~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~ 443 (478)
T PF03094_consen 395 VLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKK 443 (478)
T ss_pred hhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999997765544
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.38 E-value=31 Score=27.17 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHHHHHHHH
Q 011174 17 WVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQDALFEALQKLKEEL 63 (492)
Q Consensus 17 WaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeKiK~EL 63 (492)
+-++++.++..++++++=-.+.....+=.|++.+.+-..+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666677777777777777666777788888999999886
No 3
>PRK11677 hypothetical protein; Provisional
Probab=59.17 E-value=17 Score=33.86 Aligned_cols=44 Identities=30% Similarity=0.307 Sum_probs=29.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHHHHHHHH
Q 011174 16 TWVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQDALFEALQKLKEEL 63 (492)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeKiK~EL 63 (492)
+|..|++++|+. +++=.++.+++..= .++++.|-+-||+.|.||
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRK-LRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccch-hhHHHHHHHHHHHHHHHH
Confidence 488888766543 34444444444331 146789999999999998
No 4
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=56.66 E-value=22 Score=41.33 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhcCc-----hHHHHHHHHHHHHHH------HHHHHHHHHH
Q 011174 21 VVCFVIVLISFCAERGLHGLGKFLKKNKQ-----DALFEALQKLKEELM------LLGFISLLLT 74 (492)
Q Consensus 21 ~Vc~v~v~iSl~~Er~lH~lgk~lkk~~k-----kaL~eALeKiK~ELM------LLGFISLLLt 74 (492)
...++.++|++.+++++|...++.+.+++ .|+.+|+.+...=++ -+||+||+.+
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s 316 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTS 316 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHc
Confidence 44566778899999999999999987776 477777777766554 4799999876
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=52.82 E-value=42 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=22.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 011174 16 TWVVAVVCFVIVLISFCAERGLHGLGKF 43 (492)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~ 43 (492)
.|.+++-..+|+++-..+.-.+||..||
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777777777778899999999997
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.41 E-value=37 Score=29.65 Aligned_cols=46 Identities=15% Similarity=0.399 Sum_probs=34.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHH-------HhhHHhhcCchHHHHHHHH
Q 011174 13 HTPTWVVAVVCFVIVLISFCAERGLHG-------LGKFLKKNKQDALFEALQK 58 (492)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~lkk~~kkaL~eALeK 58 (492)
+|.-|...++..+++++-.++.+++-. +.+|+++++++.-.+||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777778887755 5678888888887777764
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=39.37 E-value=1.1e+02 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011174 51 ALFEALQKLKEELMLLGFISLLLTVFQDVI 80 (492)
Q Consensus 51 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 80 (492)
+=.+.+||+--.....||+-|.+++..+.+
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~i 171 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGAV 171 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999887753
No 8
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=32.16 E-value=21 Score=25.88 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=7.5
Q ss_pred CCccccCCCC
Q 011174 326 DAGRVKPSDE 335 (492)
Q Consensus 326 G~~~V~psD~ 335 (492)
=+|+|||+||
T Consensus 23 LD~VvKPR~D 32 (32)
T TIGR03777 23 LDPVVKPRDD 32 (32)
T ss_pred cccccccCCC
Confidence 3678888886
No 9
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=31.52 E-value=1.3e+02 Score=28.70 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011174 51 ALFEALQKLKEELMLLGFISLLLTVFQDVI 80 (492)
Q Consensus 51 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 80 (492)
+-.+.||++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 445788999999999999999998777764
No 10
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.82 E-value=1.1e+02 Score=32.26 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHH-------HHhhHHhhcCch
Q 011174 13 HTPTWVVAVVCFVIVLISFCAERGLH-------GLGKFLKKNKQD 50 (492)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH-------~lgk~lkk~~kk 50 (492)
+|+=|..+++..+++++-+++++++. .+..|+.++|++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~ 82 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRR 82 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45566666666666666667888885 445677775553
No 11
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.65 E-value=1.1e+02 Score=32.21 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=27.5
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHH-------HhhHHhhcCch
Q 011174 13 HTPTWVVAVVCFVIVLISFCAERGLHG-------LGKFLKKNKQD 50 (492)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~lkk~~kk 50 (492)
+|+=|..++++.+++++.+++++++.. +..|+.++|++
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~~ 82 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRR 82 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 567777777777777777788888854 45687775553
No 12
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=22.65 E-value=1.2e+02 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=16.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 011174 16 TWVVAVVCFVIVLISFCAERGLHG 39 (492)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~ 39 (492)
.|...+...++++++++..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 2 AWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHh
Confidence 455556666888888998885443
No 13
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=22.60 E-value=2.9e+02 Score=31.19 Aligned_cols=57 Identities=18% Similarity=0.428 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCc----hHHHHHHHHHHHHH------HHHHHHHHHHH
Q 011174 18 VVAVVCFVIVLISFCAERGLHGLGKFLKKNKQ----DALFEALQKLKEEL------MLLGFISLLLT 74 (492)
Q Consensus 18 aVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~k----kaL~eALeKiK~EL------MLLGFISLLLt 74 (492)
.++.+....+++++.++..+|.+.++.+++++ +++.+|+.+.=.=+ +.+||.+|+++
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s 686 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLS 686 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 34455566678889999999999999776543 56666776655533 44577776664
No 14
>PHA03105 EEV glycoprotein; Provisional
Probab=22.38 E-value=92 Score=30.32 Aligned_cols=33 Identities=36% Similarity=0.316 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchH
Q 011174 19 VAVVCFVIVLISFCAERGLHGLGKFLKKNKQDA 51 (492)
Q Consensus 19 VA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kka 51 (492)
+.++|..++++..++--.-|.+.|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 356788888888888888999999999888874
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.77 E-value=1.7e+02 Score=26.67 Aligned_cols=48 Identities=25% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhc
Q 011174 31 FCAERGLHGLGKFLKKNKQDALFEALQKLKEELM---------LLGFISLLLTVFQDV 79 (492)
Q Consensus 31 l~~Er~lH~lgk~lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 79 (492)
+++=.++.++++.= .++++.|-+.|++.|+||= +-.-.-||=...+++
T Consensus 10 ~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 10 LIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444431 2346789999999999983 455555666665554
No 16
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=1.8e+02 Score=27.48 Aligned_cols=61 Identities=28% Similarity=0.290 Sum_probs=37.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhc
Q 011174 15 PTWVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQDALFEALQKLKEELM---------LLGFISLLLTVFQDV 79 (492)
Q Consensus 15 PTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 79 (492)
-+|..|.+-+| +++++-.++-+|++- +-|+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36877766543 334444445555553 23456788888999998763 223456777777776
Done!