Query 011174
Match_columns 492
No_of_seqs 142 out of 240
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 43.7 27 0.00092 26.9 4.1 37 12-49 8-44 (54)
2 2k1a_A Integrin alpha-IIB; sin 38.0 36 0.0012 24.9 3.8 36 12-48 6-41 (42)
3 2l8s_A Integrin alpha-1; trans 31.8 18 0.00061 28.0 1.4 44 12-57 5-48 (54)
4 2zw3_A GAP junction beta-2 pro 20.5 3.3E+02 0.011 26.2 8.3 57 341-397 129-206 (226)
5 2uwj_E Type III export protein 15.7 68 0.0023 26.0 1.9 33 33-65 8-40 (70)
6 1zke_A Hypothetical protein HP 13.3 31 0.001 28.6 -0.7 19 49-67 64-82 (83)
7 4h63_Q Mediator of RNA polymer 11.4 1.9E+02 0.0066 30.6 4.4 27 48-74 28-55 (469)
8 1rh4_A Right-handed coiled coi 11.2 1.4E+02 0.0047 20.7 2.1 16 48-63 18-33 (35)
9 4h62_K Mediator of RNA polymer 10.2 1.5E+02 0.0051 21.1 2.0 22 47-68 7-28 (40)
10 2jwa_A Receptor tyrosine-prote 9.9 2.1E+02 0.0071 21.1 2.8 11 40-50 31-41 (44)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.73 E-value=27 Score=26.92 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCc
Q 011174 12 EHTPTWVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQ 49 (492)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~k 49 (492)
+..|.|.+.+-...-+++=.++=.++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 468999755444333333355567788887 5565554
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=38.01 E-value=36 Score=24.93 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=20.6
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcC
Q 011174 12 EHTPTWVVAVVCFVIVLISFCAERGLHGLGKFLKKNK 48 (492)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~ 48 (492)
+..|.|.+.+-...-+++=.++=.++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 468999654433333333345556777777 455443
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.80 E-value=18 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=22.5
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHH
Q 011174 12 EHTPTWVVAVVCFVIVLISFCAERGLHGLGKFLKKNKQDALFEALQ 57 (492)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALe 57 (492)
+..|.|.+.+-...-+++=.++=-++-++| +|||++ ++..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~-~~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPL-KKKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCC-SCCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC-cchhhHHh
Confidence 467999644333323333345556777877 555544 44444444
No 4
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=20.50 E-value=3.3e+02 Score=26.19 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHhc-CCc----------------ceec----cccccchhhhhhhhhhhhcc
Q 011174 341 RPAIVLNLIHFILFQNSFEIAFVVWIWCTY-GFQ----------------SCIM----EKLGYIIPRLIIGAIVQVLC 397 (492)
Q Consensus 341 rP~llL~LIHfiLFQNAFelAfF~W~~~~f-G~~----------------SC~~----~~~~~ii~Rl~~Gv~vQ~lC 397 (492)
+|+++..-+=-++|..++|.+|+.=.++=| |+. .||. |++-+++.-++++++.-+|+
T Consensus 129 ~g~l~~~Yi~~l~~R~~~E~~Fl~~qy~Ly~gf~vp~~y~C~~~PCp~~VdCfvSRPtEKtifl~fM~~vs~lsi~L~ 206 (226)
T 2zw3_A 129 EGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLN 206 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCSEEEECCTTSSSSEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHCCCccCceEeeCCCCCCCCeeeECCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455554445556799999999998776677 775 6777 45567777777776665554
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=15.66 E-value=68 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=24.1
Q ss_pred HHHHHHHHhhHHhhcCchHHHHHHHHHHHHHHH
Q 011174 33 AERGLHGLGKFLKKNKQDALFEALQKLKEELML 65 (492)
Q Consensus 33 ~Er~lH~lgk~lkk~~kkaL~eALeKiK~ELML 65 (492)
+|..|+-.+.-..++=+--|..||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666555445555567899999999999985
No 6
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=13.28 E-value=31 Score=28.57 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 011174 49 QDALFEALQKLKEELMLLG 67 (492)
Q Consensus 49 kkaL~eALeKiK~ELMLLG 67 (492)
=|+..+||+|+|.|+...|
T Consensus 64 LKe~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 64 LKELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 4678999999999986544
No 7
>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=11.43 E-value=1.9e+02 Score=30.55 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 011174 48 KQDALFEALQKLKEELML-LGFISLLLT 74 (492)
Q Consensus 48 ~kkaL~eALeKiK~ELML-LGFISLLLt 74 (492)
.|+.|.+-++-...|+|+ |=||||||+
T Consensus 28 ~R~Eml~~i~~A~nE~slaLDfvSLLLS 55 (469)
T 4h63_Q 28 YKKELIEQIMIAQTECSLALDMTSLLLS 55 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366899999999999998 999999996
No 8
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=11.19 E-value=1.4e+02 Score=20.72 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHHH
Q 011174 48 KQDALFEALQKLKEEL 63 (492)
Q Consensus 48 ~kkaL~eALeKiK~EL 63 (492)
-|-..+.||.|+|.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567888899999885
No 9
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=10.17 E-value=1.5e+02 Score=21.07 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=18.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 011174 47 NKQDALFEALQKLKEELMLLGF 68 (492)
Q Consensus 47 ~~kkaL~eALeKiK~ELMLLGF 68 (492)
-+||+|-.--||+.|.|-||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 3688999999999999987643
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.94 E-value=2.1e+02 Score=21.14 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=6.3
Q ss_pred HhhHHhhcCch
Q 011174 40 LGKFLKKNKQD 50 (492)
Q Consensus 40 lgk~lkk~~kk 50 (492)
++=|++||+++
T Consensus 31 ~~~~~RRR~~~ 41 (44)
T 2jwa_A 31 FGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHCSC
T ss_pred HHhheehhhhh
Confidence 34567776653
Done!