Query 011174
Match_columns 492
No_of_seqs 142 out of 240
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 22:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011174.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011174hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 22.9 19 0.0014 25.4 1.9 18 343-360 29-46 (51)
2 d1zkea1 a.30.6.1 (A:1-79) Hypo 10.9 39 0.0028 25.8 1.1 16 49-64 62-77 (79)
3 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.7 26 0.0019 23.1 -0.3 12 265-276 3-14 (35)
4 d1unda_ a.14.1.1 (A:) Advillin 9.6 26 0.0019 23.2 -0.3 12 265-276 4-15 (36)
5 d1xrda1 f.3.1.1 (A:1-52) Light 9.4 68 0.005 22.8 1.9 17 140-156 13-30 (52)
6 d1q1ha_ a.4.5.41 (A:) Transcri 9.2 41 0.003 26.2 0.7 34 265-299 36-81 (88)
7 d3b60a2 f.37.1.1 (A:10-328) Mu 9.2 2.1E+02 0.016 23.2 5.6 25 17-41 156-180 (319)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 7.9 2.5E+02 0.018 20.7 5.1 36 24-59 8-43 (158)
9 d1ep3a_ c.1.4.1 (A:) Dihydroor 6.2 1.6E+02 0.012 25.5 3.4 31 31-61 278-308 (311)
10 d2gola1 a.61.1.1 (A:7-107) HIV 6.1 73 0.0053 25.4 0.8 13 50-62 89-101 (101)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.88 E-value=19 Score=25.42 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhhhHHH
Q 011174 343 AIVLNLIHFILFQNSFEI 360 (492)
Q Consensus 343 ~llL~LIHfiLFQNAFel 360 (492)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 578999999999999976
No 2
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=10.91 E-value=39 Score=25.79 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHH
Q 011174 49 QDALFEALQKLKEELM 64 (492)
Q Consensus 49 kkaL~eALeKiK~ELM 64 (492)
=|+..+||+|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4688999999999973
No 3
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.74 E-value=26 Score=23.09 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=9.9
Q ss_pred hhhccccccchh
Q 011174 265 EWDFRKVVGIRW 276 (492)
Q Consensus 265 E~DFk~VVGIS~ 276 (492)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 688999999875
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.62 E-value=26 Score=23.19 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=10.0
Q ss_pred hhhccccccchh
Q 011174 265 EWDFRKVVGIRW 276 (492)
Q Consensus 265 E~DFk~VVGIS~ 276 (492)
|+||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 688999999875
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.43 E-value=68 Score=22.80 Aligned_cols=17 Identities=53% Similarity=0.768 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHH-HH
Q 011174 140 ALHQLHIFIFVLAVT-HV 156 (492)
Q Consensus 140 ~LHQLHIFIFvLAv~-HV 156 (492)
.+--+|.|+|+||+. |.
T Consensus 13 ~lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 13 ALVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455689999999964 54
No 6
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.22 E-value=41 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=20.8
Q ss_pred hhhccccccchhHHHHHHHHHHHhcc------------cceeeeeeh
Q 011174 265 EWDFRKVVGIRWYLWLFLVLFLLLNI------------EGWHTYFWL 299 (492)
Q Consensus 265 E~DFk~VVGIS~~lW~~vvlFlLlnv------------~Gw~~yfWl 299 (492)
|+|-.+..||..-- +==++|.|.+. .||++|+|-
T Consensus 36 De~iA~~tgi~in~-VRk~Ly~L~~~~L~~y~R~kd~~~gw~~Y~W~ 81 (88)
T d1q1ha_ 36 DEEIANQLNIKVND-VRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWK 81 (88)
T ss_dssp HHHHHHTTTSCHHH-HHHHHHHHHHHTSCEEEEEC---CCCCEEEEE
T ss_pred HHHHHHHhCCcHHH-HHHHHHHHHhCCceEEEEeecCCCCcEEEEEE
Confidence 44556666666432 22356666653 589999994
No 7
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.16 E-value=2.1e+02 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Q 011174 17 WVVAVVCFVIVLISFCAERGLHGLG 41 (492)
Q Consensus 17 WaVA~Vc~v~v~iSl~~Er~lH~lg 41 (492)
|.++.++.+.+.+.+++-....+-.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHH
Confidence 6667777777777766655444433
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.91 E-value=2.5e+02 Score=20.74 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhcCchHHHHHHHHH
Q 011174 24 FVIVLISFCAERGLHGLGKFLKKNKQDALFEALQKL 59 (492)
Q Consensus 24 ~v~v~iSl~~Er~lH~lgk~lkk~~kkaL~eALeKi 59 (492)
.|+++|+|+.==++=.+..+.++.+.+.....+.-+
T Consensus 8 VViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666667777665555544444433
No 9
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=6.23 E-value=1.6e+02 Score=25.51 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhHHhhcCchHHHHHHHHHHH
Q 011174 31 FCAERGLHGLGKFLKKNKQDALFEALQKLKE 61 (492)
Q Consensus 31 l~~Er~lH~lgk~lkk~~kkaL~eALeKiK~ 61 (492)
.++++++..|.+|+++++=+.+-|...++|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4688999999999999988899999999986
No 10
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.15 E-value=73 Score=25.42 Aligned_cols=13 Identities=46% Similarity=0.537 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHH
Q 011174 50 DALFEALQKLKEE 62 (492)
Q Consensus 50 kaL~eALeKiK~E 62 (492)
|.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 4457999999987
Done!