Query 011178
Match_columns 491
No_of_seqs 218 out of 1487
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1E-104 2E-109 833.8 52.8 484 3-488 51-536 (539)
2 PLN02991 oxidoreductase 100.0 1E-103 3E-108 821.1 52.7 484 5-490 52-537 (543)
3 PLN02792 oxidoreductase 100.0 2E-102 4E-107 813.7 52.2 483 5-488 40-528 (536)
4 PLN02354 copper ion binding / 100.0 3E-102 6E-107 816.7 52.1 483 5-488 51-543 (552)
5 PLN02168 copper ion binding / 100.0 2E-101 4E-106 806.6 52.3 482 5-486 50-544 (545)
6 PLN00044 multi-copper oxidase- 100.0 6E-101 1E-105 805.5 52.2 483 5-488 53-559 (596)
7 KOG1263 Multicopper oxidases [ 100.0 3.1E-96 7E-101 761.3 50.0 483 7-489 54-561 (563)
8 TIGR03389 laccase laccase, pla 100.0 7.7E-94 1.7E-98 758.2 52.8 472 3-483 25-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 4.9E-91 1.1E-95 736.6 49.2 466 5-488 47-566 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 7.5E-91 1.6E-95 734.9 49.5 463 4-484 24-539 (541)
11 PLN02604 oxidoreductase 100.0 1.4E-89 3.1E-94 727.0 50.6 469 3-488 46-566 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 4.2E-89 9E-94 719.5 47.8 453 4-468 31-536 (538)
13 PRK10965 multicopper oxidase; 100.0 4.2E-75 9.2E-80 608.1 39.7 387 3-464 68-523 (523)
14 TIGR01480 copper_res_A copper- 100.0 3.1E-74 6.7E-79 605.7 42.5 404 3-464 67-587 (587)
15 PRK10883 FtsI repressor; Provi 100.0 2.8E-73 6.1E-78 589.5 38.2 378 3-466 68-470 (471)
16 COG2132 SufI Putative multicop 100.0 1.3E-59 2.8E-64 489.6 37.1 390 3-465 55-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2.1E-42 4.6E-47 340.8 21.4 235 3-250 50-299 (311)
18 PF07731 Cu-oxidase_2: Multico 100.0 6E-31 1.3E-35 230.7 10.3 106 360-465 31-136 (138)
19 PF07732 Cu-oxidase_3: Multico 100.0 1.3E-30 2.9E-35 219.8 7.8 96 4-99 18-116 (117)
20 PF00394 Cu-oxidase: Multicopp 99.9 3.7E-27 8.1E-32 211.2 12.0 139 111-249 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 3.2E-16 7E-21 137.2 8.6 88 9-97 49-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.6 8.7E-14 1.9E-18 137.6 22.7 243 141-464 47-296 (311)
23 TIGR01480 copper_res_A copper- 99.3 2.8E-12 6E-17 136.4 7.8 82 14-97 503-587 (587)
24 TIGR03389 laccase laccase, pla 99.0 1.3E-08 2.8E-13 108.6 20.2 233 142-449 23-264 (539)
25 PLN02604 oxidoreductase 99.0 1.7E-09 3.6E-14 115.9 11.0 89 365-467 57-146 (566)
26 PLN02835 oxidoreductase 99.0 6.8E-08 1.5E-12 102.6 20.8 218 142-446 49-276 (539)
27 PLN02792 oxidoreductase 98.9 1.1E-07 2.4E-12 100.7 19.5 221 142-446 36-267 (536)
28 PLN02354 copper ion binding / 98.9 1.4E-07 3E-12 100.4 19.8 227 142-448 47-283 (552)
29 PLN02991 oxidoreductase 98.9 1.3E-07 2.8E-12 100.1 19.1 219 142-445 48-276 (543)
30 TIGR03390 ascorbOXfungal L-asc 98.8 2.3E-07 5E-12 98.9 20.2 237 142-447 28-281 (538)
31 PLN02168 copper ion binding / 98.8 2.7E-07 5.8E-12 97.9 20.1 219 142-439 46-267 (545)
32 PLN00044 multi-copper oxidase- 98.7 5.4E-07 1.2E-11 96.1 19.2 231 142-444 49-291 (596)
33 TIGR03388 ascorbase L-ascorbat 98.7 1.1E-06 2.4E-11 94.0 20.7 250 141-448 20-280 (541)
34 PF07732 Cu-oxidase_3: Multico 98.7 6.2E-08 1.4E-12 81.8 7.6 90 363-466 26-116 (117)
35 PRK10883 FtsI repressor; Provi 98.6 1.5E-06 3.2E-11 91.2 18.3 224 142-447 66-295 (471)
36 PF07731 Cu-oxidase_2: Multico 98.6 2.1E-08 4.6E-13 87.5 3.1 83 15-98 39-136 (138)
37 PLN02191 L-ascorbate oxidase 98.6 2.8E-06 6E-11 91.2 19.5 250 141-446 42-301 (574)
38 PRK10965 multicopper oxidase; 98.6 2.4E-06 5.3E-11 90.5 18.5 227 142-447 66-298 (523)
39 KOG1263 Multicopper oxidases [ 98.4 3.7E-05 8.1E-10 81.4 20.6 228 142-448 48-286 (563)
40 COG2132 SufI Putative multicop 98.4 7.2E-06 1.6E-10 86.1 15.2 222 4-232 182-435 (451)
41 PF00394 Cu-oxidase: Multicopp 98.2 5.5E-06 1.2E-10 74.1 8.0 92 362-464 59-156 (159)
42 TIGR03096 nitroso_cyanin nitro 98.2 3.3E-06 7.2E-11 71.8 5.9 57 12-83 61-121 (135)
43 TIGR03095 rusti_cyanin rusticy 98.1 1.9E-05 4.2E-10 69.3 9.0 87 364-463 53-147 (148)
44 TIGR02656 cyanin_plasto plasto 97.9 4.1E-05 8.8E-10 62.6 7.7 70 23-97 28-99 (99)
45 TIGR02656 cyanin_plasto plasto 97.8 0.00012 2.6E-09 59.9 8.0 82 363-463 17-98 (99)
46 PRK02710 plastocyanin; Provisi 97.6 0.00027 5.9E-09 59.8 7.6 66 17-97 54-119 (119)
47 TIGR03096 nitroso_cyanin nitro 97.5 0.00049 1.1E-08 58.7 7.9 59 364-449 62-120 (135)
48 TIGR02657 amicyanin amicyanin. 97.5 0.00055 1.2E-08 54.0 7.8 61 24-97 23-83 (83)
49 PF00127 Copper-bind: Copper b 97.4 0.00046 9.9E-09 56.4 6.2 37 56-97 63-99 (99)
50 PF13473 Cupredoxin_1: Cupredo 97.2 0.0004 8.7E-09 57.3 4.6 63 17-96 42-104 (104)
51 PRK02888 nitrous-oxide reducta 97.2 0.00074 1.6E-08 71.6 6.9 74 16-99 561-635 (635)
52 PF13473 Cupredoxin_1: Cupredo 97.0 0.0021 4.4E-08 53.0 6.3 68 363-461 35-102 (104)
53 COG3794 PetE Plastocyanin [Ene 96.9 0.0042 9.1E-08 52.7 7.5 73 6-98 56-128 (128)
54 TIGR02375 pseudoazurin pseudoa 96.7 0.0087 1.9E-07 50.2 8.2 38 58-100 53-90 (116)
55 PF00127 Copper-bind: Copper b 96.7 0.0099 2.2E-07 48.5 8.4 82 363-464 17-99 (99)
56 PRK02888 nitrous-oxide reducta 96.5 0.011 2.4E-07 62.9 8.8 74 364-464 556-633 (635)
57 TIGR03102 halo_cynanin halocya 96.3 0.021 4.6E-07 47.7 8.2 36 57-97 80-115 (115)
58 PRK02710 plastocyanin; Provisi 96.3 0.018 4E-07 48.6 7.7 70 365-463 49-118 (119)
59 PF06525 SoxE: Sulfocyanin (So 96.0 0.036 7.7E-07 50.3 8.3 88 12-100 86-189 (196)
60 TIGR03094 sulfo_cyanin sulfocy 95.7 0.11 2.4E-06 46.2 9.8 85 12-100 85-188 (195)
61 TIGR02375 pseudoazurin pseudoa 95.4 0.11 2.4E-06 43.6 8.4 75 363-466 15-89 (116)
62 PF06525 SoxE: Sulfocyanin (So 94.9 0.11 2.4E-06 47.2 7.5 88 142-231 74-171 (196)
63 TIGR02657 amicyanin amicyanin. 94.2 0.23 4.9E-06 39.0 7.1 71 364-463 12-82 (83)
64 COG4454 Uncharacterized copper 93.9 0.24 5.3E-06 43.1 7.1 93 365-464 65-157 (158)
65 TIGR03102 halo_cynanin halocya 93.0 0.76 1.7E-05 38.4 8.6 73 364-464 43-115 (115)
66 PF00116 COX2: Cytochrome C ox 92.6 1.1 2.5E-05 37.8 9.3 75 362-464 45-120 (120)
67 COG3794 PetE Plastocyanin [Ene 91.6 0.96 2.1E-05 38.5 7.5 74 364-465 55-128 (128)
68 TIGR02866 CoxB cytochrome c ox 90.6 1 2.2E-05 41.8 7.6 78 363-468 117-195 (201)
69 COG4454 Uncharacterized copper 90.3 0.74 1.6E-05 40.1 5.8 75 153-231 62-142 (158)
70 PF00116 COX2: Cytochrome C ox 90.1 6.1 0.00013 33.3 11.2 61 153-232 45-105 (120)
71 PF12690 BsuPI: Intracellular 88.8 3.5 7.7E-05 32.2 8.2 65 164-229 4-82 (82)
72 TIGR03094 sulfo_cyanin sulfocy 83.8 15 0.00033 33.0 10.3 95 364-465 86-186 (195)
73 COG1622 CyoA Heme/copper-type 83.7 4.1 8.9E-05 39.0 7.3 78 363-468 137-215 (247)
74 PF12690 BsuPI: Intracellular 80.9 2.6 5.7E-05 32.9 4.1 60 19-78 3-80 (82)
75 TIGR02695 azurin azurin. Azuri 76.7 10 0.00023 31.9 6.6 40 55-95 83-124 (125)
76 PF04151 PPC: Bacterial pre-pe 76.2 14 0.00031 27.5 6.9 66 153-230 4-69 (70)
77 TIGR02866 CoxB cytochrome c ox 72.3 28 0.0006 32.2 9.1 61 153-232 116-176 (201)
78 MTH00047 COX2 cytochrome c oxi 70.2 30 0.00065 31.8 8.7 76 364-467 117-193 (194)
79 PF05938 Self-incomp_S1: Plant 70.0 26 0.00057 28.7 7.6 69 21-100 2-72 (110)
80 PTZ00047 cytochrome c oxidase 69.2 22 0.00047 31.6 7.1 76 364-467 74-150 (162)
81 PF14344 DUF4397: Domain of un 69.0 66 0.0014 26.7 10.3 21 165-185 3-24 (122)
82 COG1622 CyoA Heme/copper-type 65.4 45 0.00097 32.0 9.0 63 153-234 136-198 (247)
83 PF10633 NPCBM_assoc: NPCBM-as 64.4 25 0.00055 26.8 6.0 67 158-231 1-75 (78)
84 COG2967 ApaG Uncharacterized p 64.4 9.4 0.0002 31.7 3.6 56 20-75 32-95 (126)
85 PF01835 A2M_N: MG2 domain; I 64.2 15 0.00032 29.4 4.9 69 158-232 11-86 (99)
86 MTH00140 COX2 cytochrome c oxi 64.0 26 0.00056 33.1 7.2 78 363-468 140-218 (228)
87 PF10633 NPCBM_assoc: NPCBM-as 63.3 12 0.00025 28.7 3.9 61 9-77 2-70 (78)
88 TIGR01433 CyoA cytochrome o ub 61.3 27 0.00058 33.0 6.7 77 364-468 140-217 (226)
89 TIGR03079 CH4_NH3mon_ox_B meth 59.0 30 0.00064 34.7 6.6 52 19-70 285-353 (399)
90 PF07705 CARDB: CARDB; InterP 57.0 92 0.002 24.3 9.2 68 156-232 13-84 (101)
91 PF04744 Monooxygenase_B: Mono 55.4 19 0.00042 36.1 4.8 82 10-95 261-377 (381)
92 PRK10378 inactive ferrous ion 55.4 15 0.00032 37.4 4.1 40 55-100 80-119 (375)
93 COG1470 Predicted membrane pro 55.3 1.1E+02 0.0024 32.0 10.1 85 154-247 389-481 (513)
94 COG4263 NosZ Nitrous oxide red 54.2 40 0.00088 34.8 6.8 37 423-459 594-634 (637)
95 PRK10378 inactive ferrous ion 50.2 75 0.0016 32.4 8.2 86 143-249 33-118 (375)
96 MTH00129 COX2 cytochrome c oxi 50.2 54 0.0012 31.0 6.8 77 363-467 140-217 (230)
97 MTH00023 COX2 cytochrome c oxi 48.8 74 0.0016 30.3 7.5 78 363-468 151-229 (240)
98 TIGR01432 QOXA cytochrome aa3 48.4 56 0.0012 30.6 6.6 77 364-468 131-208 (217)
99 MTH00185 COX2 cytochrome c oxi 48.0 80 0.0017 29.9 7.6 77 363-467 140-217 (230)
100 PF11142 DUF2917: Protein of u 46.6 90 0.0019 22.9 6.1 31 155-190 1-31 (63)
101 MTH00008 COX2 cytochrome c oxi 46.5 82 0.0018 29.8 7.4 78 363-468 140-218 (228)
102 smart00758 PA14 domain in bact 46.5 1.6E+02 0.0034 24.8 8.7 61 155-220 51-112 (136)
103 PF07691 PA14: PA14 domain; I 45.9 1.2E+02 0.0026 25.7 8.0 61 155-220 53-120 (145)
104 MTH00047 COX2 cytochrome c oxi 44.2 1.9E+02 0.0041 26.6 9.2 60 154-232 116-175 (194)
105 PRK05461 apaG CO2+/MG2+ efflux 42.6 15 0.00032 31.3 1.6 47 20-66 33-85 (127)
106 MTH00098 COX2 cytochrome c oxi 41.9 1.1E+02 0.0025 28.8 7.6 77 363-467 140-217 (227)
107 PF04379 DUF525: Protein of un 41.8 11 0.00024 30.0 0.6 49 20-68 16-70 (90)
108 MTH00117 COX2 cytochrome c oxi 40.2 1.2E+02 0.0026 28.7 7.4 77 363-467 140-217 (227)
109 PF14524 Wzt_C: Wzt C-terminal 40.0 95 0.002 26.1 6.4 83 144-231 19-107 (142)
110 TIGR01433 CyoA cytochrome o ub 39.7 79 0.0017 29.8 6.1 60 154-232 139-198 (226)
111 COG3354 FlaG Putative archaeal 38.2 2.7E+02 0.0058 24.2 9.0 83 142-231 51-142 (154)
112 PF00927 Transglut_C: Transglu 37.1 19 0.0004 29.4 1.3 59 13-75 10-81 (107)
113 PF14392 zf-CCHC_4: Zinc knuck 34.9 60 0.0013 22.4 3.4 40 416-455 5-45 (49)
114 MTH00038 COX2 cytochrome c oxi 34.9 1.5E+02 0.0033 27.9 7.3 77 363-467 140-217 (229)
115 TIGR01432 QOXA cytochrome aa3 34.6 98 0.0021 29.0 5.9 34 198-232 156-189 (217)
116 PF10989 DUF2808: Protein of u 34.5 43 0.00093 29.2 3.3 30 53-82 95-127 (146)
117 KOG1554 COP9 signalosome, subu 33.3 29 0.00064 33.4 2.1 9 75-83 134-142 (347)
118 PF11614 FixG_C: IG-like fold 33.3 1.2E+02 0.0026 25.0 5.7 48 163-219 34-83 (118)
119 PF04379 DUF525: Protein of un 33.2 1.1E+02 0.0024 24.3 5.1 49 163-214 15-67 (90)
120 PRK13202 ureB urease subunit b 32.7 1.7E+02 0.0037 23.8 6.0 64 154-218 11-84 (104)
121 PF10989 DUF2808: Protein of u 31.2 52 0.0011 28.7 3.2 26 425-450 99-128 (146)
122 MTH00140 COX2 cytochrome c oxi 31.0 2.7E+02 0.0059 26.2 8.3 60 153-231 139-198 (228)
123 MTH00139 COX2 cytochrome c oxi 29.2 2E+02 0.0043 27.1 7.0 77 363-467 140-217 (226)
124 PF14874 PapD-like: Flagellar- 28.4 3E+02 0.0064 21.7 7.7 58 158-227 16-82 (102)
125 MTH00076 COX2 cytochrome c oxi 28.3 2.1E+02 0.0046 27.0 7.0 77 363-467 140-217 (228)
126 MTH00051 COX2 cytochrome c oxi 28.1 2.4E+02 0.0051 26.8 7.3 78 363-468 144-222 (234)
127 cd00918 Der-p2_like Several gr 26.8 51 0.0011 27.8 2.3 24 47-70 65-88 (120)
128 MTH00154 COX2 cytochrome c oxi 26.5 2.6E+02 0.0057 26.3 7.3 78 363-468 140-218 (227)
129 PRK05461 apaG CO2+/MG2+ efflux 25.9 1.9E+02 0.0041 24.6 5.6 49 163-214 32-84 (127)
130 KOG1555 26S proteasome regulat 25.4 34 0.00074 33.7 1.1 8 76-83 119-126 (316)
131 PTZ00047 cytochrome c oxidase 25.1 3.5E+02 0.0076 24.1 7.2 60 154-232 73-132 (162)
132 PRK10525 cytochrome o ubiquino 25.1 1.9E+02 0.0041 28.8 6.3 73 364-464 152-225 (315)
133 TIGR00192 urease_beta urease, 25.0 2.9E+02 0.0063 22.4 6.1 63 155-218 12-83 (101)
134 cd08068 MPN_BRCC36 Mov34/MPN/P 24.8 46 0.00099 31.8 1.8 7 77-83 94-100 (244)
135 MTH00008 COX2 cytochrome c oxi 23.4 2.8E+02 0.0061 26.2 6.9 59 154-231 140-198 (228)
136 PRK10525 cytochrome o ubiquino 23.3 1.7E+02 0.0037 29.1 5.6 60 154-232 151-210 (315)
137 MTH00027 COX2 cytochrome c oxi 22.7 2.7E+02 0.0059 26.9 6.7 78 363-468 174-252 (262)
138 MTH00080 COX2 cytochrome c oxi 22.7 3.5E+02 0.0075 25.6 7.3 78 363-468 143-221 (231)
139 MTH00168 COX2 cytochrome c oxi 22.2 3.2E+02 0.007 25.7 7.0 77 363-467 140-217 (225)
140 PRK09918 putative fimbrial cha 21.8 3.7E+02 0.008 25.4 7.4 60 153-217 75-134 (230)
141 cd00912 ML The ML (MD-2-relate 21.5 78 0.0017 26.6 2.5 18 53-70 78-95 (127)
142 cd00916 Npc2_like Niemann-Pick 21.4 80 0.0017 26.6 2.5 18 53-70 75-92 (123)
143 cd08058 MPN_euk_mb Mpr1p, Pad1 21.3 40 0.00087 28.1 0.7 7 77-83 70-76 (119)
144 KOG4063 Major epididymal secre 21.1 75 0.0016 27.8 2.2 17 54-70 107-123 (158)
145 MTH00129 COX2 cytochrome c oxi 20.7 2.9E+02 0.0062 26.1 6.4 59 154-231 140-198 (230)
146 MTH00098 COX2 cytochrome c oxi 20.7 3.2E+02 0.0069 25.8 6.7 59 154-231 140-198 (227)
147 PF14016 DUF4232: Protein of u 20.5 4.3E+02 0.0092 22.2 6.9 55 163-220 21-82 (131)
148 PRK13198 ureB urease subunit b 20.1 3.3E+02 0.0071 23.9 5.8 63 155-218 40-111 (158)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1e-104 Score=833.81 Aligned_cols=484 Identities=61% Similarity=1.034 Sum_probs=391.8
Q ss_pred CCCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeC
Q 011178 3 WMNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFP 80 (491)
Q Consensus 3 ~~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~ 80 (491)
|..++..+||+|++. |+|+|+|+|+|+++|+|||||++|.+++||||++++||||+||++|+|+|++++|+|||||||
T Consensus 51 ~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHs 130 (539)
T PLN02835 51 ILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFP 130 (539)
T ss_pred EEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEe
Confidence 345678889999874 889999999999999999999999999999999999999999999999999877899999999
Q ss_pred CccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCCcceEEEeC
Q 011178 81 SLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNANTFTVDQ 160 (491)
Q Consensus 81 H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~~~~~~v~~ 160 (491)
|.+.|+++||+|+|||++++..+.+|+.+|+|++|+|+||++++...+...+..+...+++|.+||||+. .+.++|++
T Consensus 131 H~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~--~~~~~v~~ 208 (539)
T PLN02835 131 STLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQT--QSTFSGDQ 208 (539)
T ss_pred CccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEcccc--CceEEECC
Confidence 9999999999999999876555556667899999999999999877666556666667789999999999 78999999
Q ss_pred CCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCCcce
Q 011178 161 GKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSA 240 (491)
Q Consensus 161 g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~ 240 (491)
|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++...+.......
T Consensus 209 G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~ 288 (539)
T PLN02835 209 GKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTA 288 (539)
T ss_pred CCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999888999999875443334568
Q ss_pred EEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeEeEEE
Q 011178 241 TSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAV 320 (491)
Q Consensus 241 ~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 320 (491)
.|+|+|.++..+.+.++|..|..+..+....+....+.+.+....+.+..+........++++.+.......++...|++
T Consensus 289 ~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~i 368 (539)
T PLN02835 289 TAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAV 368 (539)
T ss_pred EEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEE
Confidence 89999988653333334433321111122222222233433333333332221212233555544332222345689999
Q ss_pred cCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeec
Q 011178 321 NSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMD 400 (491)
Q Consensus 321 Ng~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g 400 (491)
||.+|..|.+|++.+.+.+.++.|+.+.....+.+...+.++.++.++.|++|||+|+|.+...||||||||+||||++|
T Consensus 369 N~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G 448 (539)
T PLN02835 369 NGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYG 448 (539)
T ss_pred CCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEecc
Confidence 99999988999987777666677765433333333334556788899999999999999988899999999999999999
Q ss_pred cCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcc
Q 011178 401 GGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNA 480 (491)
Q Consensus 401 ~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~ 480 (491)
.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||+++|+|.++.+...+.+++|+++
T Consensus 449 ~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~ 528 (539)
T PLN02835 449 SGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNA 528 (539)
T ss_pred CCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccc
Confidence 99998665556889999999999999999999999999999999999999999999999999998765555567899999
Q ss_pred hhcccccC
Q 011178 481 LLCGRAVG 488 (491)
Q Consensus 481 ~~c~~~~~ 488 (491)
++||.-++
T Consensus 529 ~~Cg~~~~ 536 (539)
T PLN02835 529 LLCGKAIG 536 (539)
T ss_pred cccccCcc
Confidence 99997766
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.4e-103 Score=821.15 Aligned_cols=484 Identities=65% Similarity=1.142 Sum_probs=392.8
Q ss_pred CcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCc
Q 011178 5 NHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL 82 (491)
Q Consensus 5 ~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 82 (491)
.++..+||+|++. |+|+|+|+|+|+++|+|||||++|.+++||||++++||||+||++|+|+|++++|+||||||||.
T Consensus 52 vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~ 131 (543)
T PLN02991 52 INGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSL 131 (543)
T ss_pred EcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCc
Confidence 3567788888774 78888899999999999999999999999999988999999999999999997789999999999
Q ss_pred cccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCCcceEEEeCCC
Q 011178 83 AFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNANTFTVDQGK 162 (491)
Q Consensus 83 ~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~~~~~~v~~g~ 162 (491)
+.|+++||+|+|||++++.++.+++.+++|++|+|+||++++...+...+..+...+++|.+||||+.. .++++|++|+
T Consensus 132 ~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~-~~~~~v~~G~ 210 (543)
T PLN02991 132 GFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGS-GATLNIEPGK 210 (543)
T ss_pred chhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCC-CceEEECCCC
Confidence 999999999999999986666677667899999999999998766655555555667899999999973 5789999999
Q ss_pred EEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCCcceEE
Q 011178 163 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATS 242 (491)
Q Consensus 163 ~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~a 242 (491)
+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|+++|++|+|||++...+........|
T Consensus 211 ~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~A 290 (543)
T PLN02991 211 TYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTG 290 (543)
T ss_pred EEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999998755444457899
Q ss_pred EEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeEeEEEcC
Q 011178 243 VLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNS 322 (491)
Q Consensus 243 il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg 322 (491)
||+|+++..+.+.+.|..|. ...++.+.+......|.+....+.|..+..+.....++++.+.......++...|+||+
T Consensus 291 Il~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~ 369 (543)
T PLN02991 291 VLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNS 369 (543)
T ss_pred EEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECC
Confidence 99999875322223333332 22232222222333444433334444322222223344444432111124567999999
Q ss_pred eeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccC
Q 011178 323 VSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGG 402 (491)
Q Consensus 323 ~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g 402 (491)
.+|..|++|+|.+.+.+.+|.|+.+.....|.++.......++.++.|++|||+|+|.....||||||||+||||++|.|
T Consensus 370 ~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G 449 (543)
T PLN02991 370 ASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELG 449 (543)
T ss_pred CccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCC
Confidence 99999999998877776778776543333333333344567888999999999999998889999999999999999999
Q ss_pred CCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcchh
Q 011178 403 EWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALL 482 (491)
Q Consensus 403 ~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~ 482 (491)
.|++.+...||+.||++|||+.|+++||++|||+|||||+|+|||||..|+..||++++.|.++.+....++++|++.++
T Consensus 450 ~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~ 529 (543)
T PLN02991 450 KWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALL 529 (543)
T ss_pred CCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCc
Confidence 99877666799999999999999999999999999999999999999999999999999998777766667889999999
Q ss_pred cccccCCC
Q 011178 483 CGRAVGHR 490 (491)
Q Consensus 483 c~~~~~~~ 490 (491)
||.-++.+
T Consensus 530 Cg~~~~~~ 537 (543)
T PLN02991 530 CGRATGHH 537 (543)
T ss_pred cccCCCCC
Confidence 98777654
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=2e-102 Score=813.72 Aligned_cols=483 Identities=61% Similarity=1.037 Sum_probs=390.4
Q ss_pred CcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCc
Q 011178 5 NHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL 82 (491)
Q Consensus 5 ~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 82 (491)
.++..+||+|++. |+|+|+|+|+|+++++|||||++|++++||||++++||||+||++|+|+|++++|+||||||||.
T Consensus 40 vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~ 119 (536)
T PLN02792 40 INGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSL 119 (536)
T ss_pred ECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCc
Confidence 4567788888874 78899999999999999999999999999999988999999999999999997789999999999
Q ss_pred cccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCC-CCceEEEcCcCC-CcceEEEeC
Q 011178 83 AFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLP-FPDGLVINGRGS-NANTFTVDQ 160 (491)
Q Consensus 83 ~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~vNG~~~-~~~~~~v~~ 160 (491)
+.|+++||+|+|||++++..+.+|+.+++|++|+|+||++++...+...+..+...+ ++|.+||||++. ..++++|++
T Consensus 120 ~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~ 199 (536)
T PLN02792 120 AVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGVSYVYSITVDK 199 (536)
T ss_pred chhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhccCcCCCCCCEEEEeccCCCCcceEEECC
Confidence 999999999999999866555667677899999999999998776655555554433 889999999963 247899999
Q ss_pred CCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCCcce
Q 011178 161 GKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSA 240 (491)
Q Consensus 161 g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~ 240 (491)
|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|||++...+......+
T Consensus 200 Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~ 279 (536)
T PLN02792 200 GKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLV 279 (536)
T ss_pred CCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999888999999987554344678
Q ss_pred EEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeEeEE
Q 011178 241 TSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQRYA 319 (491)
Q Consensus 241 ~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 319 (491)
.|||+|.++..... ..|..|. .+..++.+....++..+.+..+.+.|+++..+.....++++.+.......++...|+
T Consensus 280 ~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (536)
T PLN02792 280 SSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYA 358 (536)
T ss_pred EEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEE
Confidence 89999987643211 1122221 233333333333344444333344554433332233445554443222233567899
Q ss_pred EcCeeeeCCCCccccccccCCCCccccCCCCCCCC-CCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEe
Q 011178 320 VNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPT-GGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVG 398 (491)
Q Consensus 320 iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~ 398 (491)
|||.+|..|++|+|.+.++++.|.++.+.....|. .+....++.++.++.|++|||+|+|.....||||||||+||||+
T Consensus 359 iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg 438 (536)
T PLN02792 359 INGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVG 438 (536)
T ss_pred ECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEe
Confidence 99999999999999887766677775442222222 22233457788999999999999998878899999999999999
Q ss_pred eccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCC
Q 011178 399 MDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPS 478 (491)
Q Consensus 399 ~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~ 478 (491)
+|.|.|++.....||+.||++|||+.|+++||++|||+|||||+|+||||+..|+..||+++|.|.++.+....++++|+
T Consensus 439 ~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~ 518 (536)
T PLN02792 439 INKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPK 518 (536)
T ss_pred ecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCc
Confidence 99999988777789999999999999999999999999999999999999999999999999999877665556788999
Q ss_pred cchhcccccC
Q 011178 479 NALLCGRAVG 488 (491)
Q Consensus 479 ~~~~c~~~~~ 488 (491)
+.++||..++
T Consensus 519 ~~~~Cg~~~~ 528 (536)
T PLN02792 519 NALLCGRASN 528 (536)
T ss_pred ccCccccccC
Confidence 9999987655
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.6e-102 Score=816.67 Aligned_cols=483 Identities=55% Similarity=0.965 Sum_probs=385.6
Q ss_pred CcccCCCCeEEE--eeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCc
Q 011178 5 NHFSSLGCSLIT--HLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL 82 (491)
Q Consensus 5 ~~~~~~G~~l~v--~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 82 (491)
.++..+||+|++ ||+|+|+|+|+|+++|+|||||++|.+++||||+++|||||+||++|+|+|++.+|+||||||||.
T Consensus 51 iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~ 130 (552)
T PLN02354 51 INGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPST 130 (552)
T ss_pred ECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCc
Confidence 466778888887 478899999999999999999999999999999999999999999999999987789999999999
Q ss_pred cccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCC-----CcceEE
Q 011178 83 AFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGS-----NANTFT 157 (491)
Q Consensus 83 ~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~-----~~~~~~ 157 (491)
+.|+++||+|+|||++++..+.+|+.+++|++|+|+||++++...+...+..+.....++++||||+.. ..+.++
T Consensus 131 ~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~ 210 (552)
T PLN02354 131 GMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFT 210 (552)
T ss_pred cceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEE
Confidence 999999999999999987666777777899999999999998777766666665566789999999962 247899
Q ss_pred EeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCC
Q 011178 158 VDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQV 237 (491)
Q Consensus 158 v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~ 237 (491)
|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++...+....
T Consensus 211 v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~ 290 (552)
T PLN02354 211 MKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKV 290 (552)
T ss_pred ECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999886544444
Q ss_pred cceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeEe
Q 011178 238 LSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQR 317 (491)
Q Consensus 238 ~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (491)
....|+|+|.++..+.+...|..|. ...++.+.+..+..++.+....+.+.....+.....++++.+.......++...
T Consensus 291 ~~~~ail~Y~g~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 369 (552)
T PLN02354 291 LTTTGIIRYEGGKGPASPELPEAPV-GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLR 369 (552)
T ss_pred ccEEEEEEECCCCCCCCCCCCCCCc-ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEE
Confidence 6788999998865332222332221 111223233333333443333333322211112234455555432212345678
Q ss_pred EEEcCeeeeCCCCccccccccCC-CCccccCC-CCCCCC-CCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCe
Q 011178 318 YAVNSVSFIPADTPLKLADYFKI-PGVFSVGS-IPDNPT-GGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNF 394 (491)
Q Consensus 318 ~~iNg~~f~~~~~p~~~~~~~~~-~~~~~~~~-~~~~p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F 394 (491)
|+|||.+|..|++|+|.+.+.++ .|.++.+. ....|. ......+..++.++.|++|||+|+|.+...||||||||+|
T Consensus 370 ~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F 449 (552)
T PLN02354 370 YALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSF 449 (552)
T ss_pred EEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccE
Confidence 99999999999999987765433 25444221 111111 1123345678899999999999999988899999999999
Q ss_pred EEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCC
Q 011178 395 FAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEY 474 (491)
Q Consensus 395 ~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~ 474 (491)
|||++|.|.|+++....+|+.||++|||+.|+++||++|||+|||||+|+|||||..|++.||.+.+.|.++.+.++++.
T Consensus 450 ~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~ 529 (552)
T PLN02354 450 FAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEY 529 (552)
T ss_pred EEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCC
Confidence 99999999998766667999999999999999999999999999999999999999999999999999998766666667
Q ss_pred CCCCcchhcccccC
Q 011178 475 PIPSNALLCGRAVG 488 (491)
Q Consensus 475 ~~p~~~~~c~~~~~ 488 (491)
++|++.+.|+..++
T Consensus 530 ~~P~~~~~C~~~~~ 543 (552)
T PLN02354 530 NMPENALLCGKVKG 543 (552)
T ss_pred CCCccccccccccC
Confidence 89999999998775
No 5
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2e-101 Score=806.58 Aligned_cols=482 Identities=50% Similarity=0.838 Sum_probs=375.7
Q ss_pred CcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCc
Q 011178 5 NHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL 82 (491)
Q Consensus 5 ~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 82 (491)
.++..+||+|++. |+|+|+|+|+|+++|+|||||++|++++||||+++|||||+||++|+|+|++++|+||||||||.
T Consensus 50 vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~ 129 (545)
T PLN02168 50 INDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSL 129 (545)
T ss_pred ECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecCh
Confidence 4677888888874 78899999999999999999999999999999999999999999999999997689999999999
Q ss_pred cccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCCcceEEEeCCC
Q 011178 83 AFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNANTFTVDQGK 162 (491)
Q Consensus 83 ~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~~~~~~v~~g~ 162 (491)
+.|+++||+|+|||++++..+.+++.+++|++|+|+||++.+...+...+..+...+++|.+||||++...++++|++|+
T Consensus 130 ~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~~~~v~~G~ 209 (545)
T PLN02168 130 LLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPEETFFAFEPGK 209 (545)
T ss_pred hhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCCcceEEeCCCC
Confidence 99999999999999998766666667789999999999998765554444444445678999999997446899999999
Q ss_pred EEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCC-c---ceEEEEEeeccCCCc
Q 011178 163 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPP-Q---GYYIVISTRFTSQVL 238 (491)
Q Consensus 163 ~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~-g---~~~i~~~~~~~~~~~ 238 (491)
+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++.+ | +|||++.........
T Consensus 210 ~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~ 289 (545)
T PLN02168 210 TYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYL 289 (545)
T ss_pred EEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCc
Confidence 999999999999999999999999999999999999999999999999999999998644 4 799999876544556
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeEe
Q 011178 239 SATSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQR 317 (491)
Q Consensus 239 ~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (491)
.+.|+|+|.++......++|..|. .+...+.+....+...+.+..+.+.|.++..+.....++++.+.......++...
T Consensus 290 ~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 369 (545)
T PLN02168 290 GGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLR 369 (545)
T ss_pred ceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEE
Confidence 788999998764322223333232 1121111211222223333222333332222222234455544331111245688
Q ss_pred EEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEE
Q 011178 318 YAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAV 397 (491)
Q Consensus 318 ~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl 397 (491)
|+|||.+|..|++|++.+.++++.+.+..+.....|.+.....++.++.++.|++|||+|+|.....||||||||+||||
T Consensus 370 ~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vv 449 (545)
T PLN02168 370 YTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVV 449 (545)
T ss_pred EEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEE
Confidence 99999999999999887665544444332211112221112224678899999999999999987889999999999999
Q ss_pred eeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEe-----cCCcc-Cc
Q 011178 398 GMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVY-----SSANS-WR 471 (491)
Q Consensus 398 ~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~-----~~~~~-~~ 471 (491)
++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+|||||..|++.||++.++|. .|++. ..
T Consensus 450 g~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~ 529 (545)
T PLN02168 450 GYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVR 529 (545)
T ss_pred ECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccc
Confidence 9999999977666799999999999999999999999999999999999999999999999999884 23332 23
Q ss_pred cCCCCCCcchhcccc
Q 011178 472 DEYPIPSNALLCGRA 486 (491)
Q Consensus 472 ~~~~~p~~~~~c~~~ 486 (491)
.++++|+++++||..
T Consensus 530 ~~~~~P~~~~~cg~~ 544 (545)
T PLN02168 530 DENPIPGNVIRCGKV 544 (545)
T ss_pred cccCCChhhcccccC
Confidence 356799999999843
No 6
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6e-101 Score=805.48 Aligned_cols=483 Identities=49% Similarity=0.838 Sum_probs=385.2
Q ss_pred CcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCc
Q 011178 5 NHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSL 82 (491)
Q Consensus 5 ~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~ 82 (491)
.++..+||+|++. |+|+|+|+|+|+++|+|||||++|++++|+||+++|||||+||++|+|+|++++|+||||||||.
T Consensus 53 vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~ 132 (596)
T PLN00044 53 INGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPST 132 (596)
T ss_pred EcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccc
Confidence 4567788888874 78899999999999999999999999999999988999999999999999998799999999999
Q ss_pred cccccCCceeEEEEecCCCCCCCCCCC-CCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCC---------
Q 011178 83 AFHKAAGGYGGIKIASRPLIPVPFDPP-AGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSN--------- 152 (491)
Q Consensus 83 ~~q~~~Gl~G~liV~~~~~~~~~~~~~-~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~--------- 152 (491)
+.|+++||+|+|||++++..+.||... ++|++|+|+||++++..++...+..+.....++.++|||++..
T Consensus 133 ~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~ 212 (596)
T PLN00044 133 ALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPP 212 (596)
T ss_pred hhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccC
Confidence 999999999999999987666666543 4799999999999987766655665555567899999998641
Q ss_pred ---cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCc-ceEEE
Q 011178 153 ---ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQ-GYYIV 228 (491)
Q Consensus 153 ---~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g-~~~i~ 228 (491)
.+.++|++|++|||||||++..+.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|+++|+++ +|||+
T Consensus 213 ~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~ 292 (596)
T PLN00044 213 GITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVV 292 (596)
T ss_pred CCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEE
Confidence 24799999999999999999999999999999999999999999999999999999999999999998765 89999
Q ss_pred EEeecc----CCCcceEEEEEecCCCCCCCCCCCCCC--CccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceE
Q 011178 229 ISTRFT----SQVLSATSVLHYSNSAGSVSGPPPGGP--TTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHT 302 (491)
Q Consensus 229 ~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~ 302 (491)
+...+. .+...+.|||+|.++....+.+.|..| ..+..++.+....+.+.+......+.|+++..+......+.
T Consensus 293 a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 372 (596)
T PLN00044 293 ASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDV 372 (596)
T ss_pred EecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeee
Confidence 875321 144678899999876532222234333 12333333333444433333223344443222211222222
Q ss_pred EEEecccc-CcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCC
Q 011178 303 IRLQNTAP-TINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPE 381 (491)
Q Consensus 303 ~~l~~~~~-~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~ 381 (491)
+.+..... ..++...|+|||.+|..|+.|++.+.++++.++|+.+.....|. ......+.++.+++|++|||+|+|..
T Consensus 373 ~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~-~~~~~~t~v~~~~~n~~VeiV~qn~~ 451 (596)
T PLN00044 373 YLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMN-RLPKLDTSIINGTYKGFMEIIFQNNA 451 (596)
T ss_pred eeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCc-cccccCceEEEcCCCCEEEEEEeCCC
Confidence 22211000 11246899999999999999999888877788887654433332 22334677889999999999999987
Q ss_pred CCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEE
Q 011178 382 DTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYL 461 (491)
Q Consensus 382 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~ 461 (491)
...||||||||+|+||++|.|.|++++...||+.||++|||+.|+++||++|||++||||+|+|||||+.|++.||++.|
T Consensus 452 ~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~ 531 (596)
T PLN00044 452 TNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYI 531 (596)
T ss_pred CCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEE
Confidence 77899999999999999999999987777899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcc-CccCCCCCCcchhcccccC
Q 011178 462 RVYSSANS-WRDEYPIPSNALLCGRAVG 488 (491)
Q Consensus 462 ~V~~~~~~-~~~~~~~p~~~~~c~~~~~ 488 (491)
.|.++.+. ...++++|+++++||.-++
T Consensus 532 ~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 532 NVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred EEecCCCCccccccCCCcccCccccccc
Confidence 99876643 4457889999999987655
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-96 Score=761.33 Aligned_cols=483 Identities=45% Similarity=0.712 Sum_probs=413.7
Q ss_pred ccCCCCeEEE--eeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCccc
Q 011178 7 FSSLGCSLIT--HLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAF 84 (491)
Q Consensus 7 ~~~~G~~l~v--~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 84 (491)
+.-|||+|++ ||+|.|+|.|+++++++|||||++|..++|+||+.+|||||+||++|+|+|++++|.||||||+|.+.
T Consensus 54 G~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 54 GQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred CCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccc
Confidence 3345555544 35557779999999999999999999999999944599999999999999999889999999999999
Q ss_pred cccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccC-CHHHHHHHHhcCCCCCC-CceEEEcCcCCCc----ceEEE
Q 011178 85 HKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKK-NHTDLKAILDSGSDLPF-PDGLVINGRGSNA----NTFTV 158 (491)
Q Consensus 85 q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~vNG~~~~~----~~~~v 158 (491)
|+++|++|+|||++++..+.||+.+|+|++|+|+||+.+ +...+...+..+...+. +|.++|||+.... ++++|
T Consensus 134 ~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v 213 (563)
T KOG1263|consen 134 QRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTV 213 (563)
T ss_pred ccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEE
Confidence 999999999999999887888888999999999999996 77777776666555444 8999999997422 68999
Q ss_pred eCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCC--
Q 011178 159 DQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQ-- 236 (491)
Q Consensus 159 ~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~-- 236 (491)
++||+|||||+|+|....+.|+|++|+|+||++||.+++|..+++|.|.||||+||+|+++|.+++|+|.+...+...
T Consensus 214 ~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~ 293 (563)
T KOG1263|consen 214 EPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNV 293 (563)
T ss_pred cCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred --CcceEEEEEecCCCCCCCCCCC----CCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEecccc
Q 011178 237 --VLSATSVLHYSNSAGSVSGPPP----GGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAP 310 (491)
Q Consensus 237 --~~~~~ail~y~~~~~~~~~~~p----~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~ 310 (491)
.....++|+|.++..+.+...+ ..|..+..++....+.+++.+....+.++|++++.+......+.+.+.....
T Consensus 294 ~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~ 373 (563)
T KOG1263|consen 294 PFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN 373 (563)
T ss_pred ceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC
Confidence 6788899999985544443322 1232466677888888888888888889999888777667777777766544
Q ss_pred CcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCC--C-CCC-cceeeeEEeecCCcEEEEEEEcCCC---C
Q 011178 311 TINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNP--T-GGG-AYLQTSVMAADFRGFAEVVFENPED---T 383 (491)
Q Consensus 311 ~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p--~-~~~-~~~~~~~~~~~~g~~v~~~i~N~~~---~ 383 (491)
..+++.+++||+.+|..|++|.+++.++...+.+..+...+.| . ... .+.++.++.+++++.||++|+|.+. .
T Consensus 374 ~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~ 453 (563)
T KOG1263|consen 374 KNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQE 453 (563)
T ss_pred CCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCC
Confidence 4577899999999999999999888876654333334344444 1 212 3788999999999999999999874 4
Q ss_pred CCceeccCCCeEEEeeccCCCCC--CCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEE
Q 011178 384 LQSWHIDGHNFFAVGMDGGEWTP--ASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYL 461 (491)
Q Consensus 384 ~HP~HlHG~~F~Vl~~g~g~~~~--~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~ 461 (491)
.||||||||.||||+.|.|+|++ +....||+.+|+.||||.|+||+|++|||.|||||+|+||||+.+|...||++.|
T Consensus 454 ~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f 533 (563)
T KOG1263|consen 454 NHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVF 533 (563)
T ss_pred CCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEE
Confidence 59999999999999999999999 5557899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccCccCCCCCCcchhcccccCC
Q 011178 462 RVYSSANSWRDEYPIPSNALLCGRAVGH 489 (491)
Q Consensus 462 ~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 489 (491)
+|.++++.++.+.++|.+.++||.-++.
T Consensus 534 ~V~~~~~~~~~~~~~P~~~~~cg~~~~~ 561 (563)
T KOG1263|consen 534 IVGNGEESLSSEYPPPKNLPKCGRASGI 561 (563)
T ss_pred EEeCCCccCCcCCCCCCCcccccccCCc
Confidence 9999888877888999999999988764
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=7.7e-94 Score=758.17 Aligned_cols=472 Identities=26% Similarity=0.418 Sum_probs=356.9
Q ss_pred CCCcccCCCCeEEE--eeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEe
Q 011178 3 WMNHFSSLGCSLIT--HLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYF 79 (491)
Q Consensus 3 ~~~~~~~~G~~l~v--~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 79 (491)
|..++..+||+|++ ||+|+|+|+|+|+++|+|||||++|.+++|+||+++ |||||+||++|+|+|++.+++||||||
T Consensus 25 ~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYH 104 (539)
T TIGR03389 25 LTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWH 104 (539)
T ss_pred EEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEe
Confidence 34577889999987 489999999999999999999999999999999999 999999999999999996689999999
Q ss_pred CCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHH-HHHhcCCCCCCCceEEEcCcCC-------
Q 011178 80 PSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLK-AILDSGSDLPFPDGLVINGRGS------- 151 (491)
Q Consensus 80 ~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~~~~~~~~~~~~vNG~~~------- 151 (491)
||.+.|+ +||+|+|||+++++.+.+++.+|+|++|+|+||++++...+. .....+....++|+++|||+..
T Consensus 105 sH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~ 183 (539)
T TIGR03389 105 AHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSS 183 (539)
T ss_pred cCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCC
Confidence 9998665 599999999997765566667799999999999998766543 3334444456789999999862
Q ss_pred -CcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEE
Q 011178 152 -NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIS 230 (491)
Q Consensus 152 -~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~ 230 (491)
..+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++++|+|||++.
T Consensus 184 ~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~ 263 (539)
T TIGR03389 184 KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAAR 263 (539)
T ss_pred CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEe
Confidence 1258999999999999999999999999999999999999999999999999999999999999999988899999997
Q ss_pred eeccC----CCcceEEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEE
Q 011178 231 TRFTS----QVLSATSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRL 305 (491)
Q Consensus 231 ~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l 305 (491)
...+. ......|+|+|.++........+..|. .+...... ....+........|.. .+ ..+++++.+
T Consensus 264 ~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~p---~~~~~~~~~ 335 (539)
T TIGR03389 264 PYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATN----FSNKLRSLNSAQYPAN-VP---VTIDRRLFF 335 (539)
T ss_pred ccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhH----HHhhcccccccCCCCC-CC---CCCCeEEEE
Confidence 64321 234678999998764321111111111 11100010 0001111110000100 00 022333322
Q ss_pred ecccc----------C-cCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCC-----------CCCCcceeee
Q 011178 306 QNTAP----------T-INGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNP-----------TGGGAYLQTS 363 (491)
Q Consensus 306 ~~~~~----------~-~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p-----------~~~~~~~~~~ 363 (491)
..... . ......|+||+++|..|..|++.+.+.++.+.+..+.....| .+...+.+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 415 (539)
T TIGR03389 336 TIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTK 415 (539)
T ss_pred EeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCce
Confidence 21100 0 122468999999999889998765554444433221111111 0111233567
Q ss_pred EEeecCCcEEEEEEEcCC---CCCCceeccCCCeEEEeeccCCCCCCC-CCCcccCCCCceeeEEeCCCCEEEEEEEccC
Q 011178 364 VMAADFRGFAEVVFENPE---DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNLRDTISRCTVQVYPKSWTAVYVPLDN 439 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~v~p~~~~~irf~adn 439 (491)
++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+.||++|||+.|+++||++|||+|||
T Consensus 416 v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adN 495 (539)
T TIGR03389 416 VVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADN 495 (539)
T ss_pred EEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCC
Confidence 899999999999999985 347999999999999999999887542 2368999999999999999999999999999
Q ss_pred cceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcchhc
Q 011178 440 VGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLC 483 (491)
Q Consensus 440 pG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 483 (491)
||.|+|||||++|+..||++.|.+..++....+.+++|+++++|
T Consensus 496 PG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 496 PGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999998865533334468899999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.9e-91 Score=736.57 Aligned_cols=466 Identities=28% Similarity=0.485 Sum_probs=347.2
Q ss_pred CcccCCCCeEEE--eeeEEEEEEecCC-CCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEeC
Q 011178 5 NHFSSLGCSLIT--HLYTHLVVLNFIY-MAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFP 80 (491)
Q Consensus 5 ~~~~~~G~~l~v--~d~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~ 80 (491)
.++..+||+||+ ||+|+|+|+|+|+ ++|+|||||++|++++|+||+++ +||||+||++|+|+|++ +++|||||||
T Consensus 47 vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHs 125 (574)
T PLN02191 47 VNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHG 125 (574)
T ss_pred ECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEee
Confidence 456778888887 4888999999998 78999999999999999999999 99999999999999999 5899999999
Q ss_pred CccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhc--CCCCCCCceEEEcCcCCC------
Q 011178 81 SLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDS--GSDLPFPDGLVINGRGSN------ 152 (491)
Q Consensus 81 H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~vNG~~~~------ 152 (491)
|.+.|+++||+|+|||+++.+...++ .+|+|++|+|+||++.........+.. .....+++.++|||++..
T Consensus 126 H~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~ 204 (574)
T PLN02191 126 HYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAA 204 (574)
T ss_pred CcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccc
Confidence 99999999999999999754332233 469999999999999864432211211 112356789999987631
Q ss_pred -------------------cc-eEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceE
Q 011178 153 -------------------AN-TFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSY 212 (491)
Q Consensus 153 -------------------~~-~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~ 212 (491)
.+ +++|++|++|||||||+|+.+.+.|+|+||+|+|||+||.+++|+.+++|.|++||||
T Consensus 205 ~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRy 284 (574)
T PLN02191 205 QFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESY 284 (574)
T ss_pred cccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeE
Confidence 12 6999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-cceEEEEEeeccC-CCcceEEEEEecCCCCCCCC--CCCCCCC-ccccchhhhhhhhccCCCCCCCCCC
Q 011178 213 SVLVRADQPP-QGYYIVISTRFTS-QVLSATSVLHYSNSAGSVSG--PPPGGPT-TQIDWSLEQARSLRRNLTASGPRPN 287 (491)
Q Consensus 213 dv~v~~~~~~-g~~~i~~~~~~~~-~~~~~~ail~y~~~~~~~~~--~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (491)
||+|+++|++ ++||||+...... ......|+|+|.+....... +.|..|. .+... .......+......+.
T Consensus 285 dVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~ 360 (574)
T PLN02191 285 SVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER----SKNFSKKIFSAMGSPS 360 (574)
T ss_pred EEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccch----hhcccccccccccCCC
Confidence 9999999876 5899999764321 12345799999875432111 1111111 11110 0111111111000011
Q ss_pred CCCCCCccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCC---------CCCC-CC
Q 011178 288 PQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPD---------NPTG-GG 357 (491)
Q Consensus 288 p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~---------~p~~-~~ 357 (491)
+.. ...++++.+.... ..++..+|.+|+.+|..|..|+|.+.+.+..+.++.+.... .+.. ..
T Consensus 361 ~p~------~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (574)
T PLN02191 361 PPK------KYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPN 433 (574)
T ss_pred CCC------cccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCcccc
Confidence 110 1123444443211 12345689999999998899988776544444433221100 0000 01
Q ss_pred cceeeeEEeecCCcEEEEEEEcCC------CCCCceeccCCCeEEEeeccCCCCCCC-CCCcccCCCCceeeEEeCCCCE
Q 011178 358 AYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNLRDTISRCTVQVYPKSW 430 (491)
Q Consensus 358 ~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~v~p~~~ 430 (491)
.+.+..++.++.|++|||+|+|.. ...||||||||+||||++|.|.|+++. ...+|+.||++|||+.|+++||
T Consensus 434 ~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw 513 (574)
T PLN02191 434 TTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGW 513 (574)
T ss_pred ccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCE
Confidence 223567889999999999999985 567999999999999999999998632 2468999999999999999999
Q ss_pred EEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcchhcccccC
Q 011178 431 TAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVG 488 (491)
Q Consensus 431 ~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 488 (491)
++|||++||||.|+|||||.+|+..||+++|. +.+++ .+++|++++.|+.+.+
T Consensus 514 ~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 514 TAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDEALGCGLTKQ 566 (574)
T ss_pred EEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcchhhhhcccc
Confidence 99999999999999999999999999999995 33433 2458899999987654
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=7.5e-91 Score=734.87 Aligned_cols=463 Identities=29% Similarity=0.511 Sum_probs=350.6
Q ss_pred CCcccCCCCeEEE--eeeEEEEEEecCC-CCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEe
Q 011178 4 MNHFSSLGCSLIT--HLYTHLVVLNFIY-MAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYF 79 (491)
Q Consensus 4 ~~~~~~~G~~l~v--~d~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 79 (491)
..++..+||+|++ ||+|+|+|+|+|. ++++|||||++|.+++||||+++ +||+|+||++|+|+|++ +++||||||
T Consensus 24 ~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH 102 (541)
T TIGR03388 24 GINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYH 102 (541)
T ss_pred EECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEE
Confidence 3467788999887 4889999999995 88999999999999999999999 99999999999999999 589999999
Q ss_pred CCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcC--CCCCCCceEEEcCcCCC-----
Q 011178 80 PSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSG--SDLPFPDGLVINGRGSN----- 152 (491)
Q Consensus 80 ~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~vNG~~~~----- 152 (491)
||.+.|+++||+|+|||+++..++.++ .+|+|++|+|+||+++...+....+... ....+++.++|||+++.
T Consensus 103 ~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~ 181 (541)
T TIGR03388 103 GHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLA 181 (541)
T ss_pred ecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccc
Confidence 999999999999999999986544555 4689999999999999765433222211 12246799999998531
Q ss_pred --------------------cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceE
Q 011178 153 --------------------ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSY 212 (491)
Q Consensus 153 --------------------~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~ 212 (491)
...++|++|++|||||||+|..+.+.|+|++|+|+|||+||.+++|..++.|.|++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~ 261 (541)
T TIGR03388 182 AKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETY 261 (541)
T ss_pred cccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEE
Confidence 134899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-cceEEEEEeecc-CCCcceEEEEEecCCCCCCCC--CCCCCCC-ccccchhhhhhhhccCCCCCCCCCC
Q 011178 213 SVLVRADQPP-QGYYIVISTRFT-SQVLSATSVLHYSNSAGSVSG--PPPGGPT-TQIDWSLEQARSLRRNLTASGPRPN 287 (491)
Q Consensus 213 dv~v~~~~~~-g~~~i~~~~~~~-~~~~~~~ail~y~~~~~~~~~--~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (491)
||+|++++++ |+|||++..... .....+.|+|+|.++...... +.+..|. .+.... ......+......+.
T Consensus 262 dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~ 337 (541)
T TIGR03388 262 SVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS----KAFSLAIKAAMGSPK 337 (541)
T ss_pred EEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh----hccchhhhccccCCC
Confidence 9999999866 589999876433 223467899999875432111 1111221 010000 000000100000111
Q ss_pred CCCCCCccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCC----------CCCCCCC
Q 011178 288 PQGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIP----------DNPTGGG 357 (491)
Q Consensus 288 p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~----------~~p~~~~ 357 (491)
+. ...++++.+.......++..+|++|+.+|..|..|+|.+.+.+..++++.+... ..+....
T Consensus 338 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (541)
T TIGR03388 338 PP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPN 410 (541)
T ss_pred CC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccc
Confidence 11 123455443332212234567999999998888898876654443333321110 0011123
Q ss_pred cceeeeEEeecCCcEEEEEEEcCC------CCCCceeccCCCeEEEeeccCCCCCC-CCCCcccCCCCceeeEEeCCCCE
Q 011178 358 AYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMDGGEWTPA-SRLTYNLRDTISRCTVQVYPKSW 430 (491)
Q Consensus 358 ~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~~rDTv~v~p~~~ 430 (491)
.+.++.++.++.|++||++|+|.. ...||||||||+||||++|.|.|+.. ....+|+.||++|||+.|++++|
T Consensus 411 ~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gw 490 (541)
T TIGR03388 411 TTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGW 490 (541)
T ss_pred cccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCce
Confidence 344678889999999999999974 35799999999999999999988754 23468999999999999999999
Q ss_pred EEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcchhcc
Q 011178 431 TAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCG 484 (491)
Q Consensus 431 ~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 484 (491)
++|||+|||||.|+|||||++|+..||+++|... +++ .+.+|+++++|+
T Consensus 491 vvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~~----~~~~P~~~~~C~ 539 (541)
T TIGR03388 491 TALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VEK----VGKLPKEALGCG 539 (541)
T ss_pred EEEEEECCCCeEeeeeccchhhhhcccEEEEecc-ccc----cCCCCccccCCC
Confidence 9999999999999999999999999999999654 333 356899999997
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.4e-89 Score=727.04 Aligned_cols=469 Identities=29% Similarity=0.491 Sum_probs=354.5
Q ss_pred CCCcccCCCCeEEE--eeeEEEEEEecC-CCCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeE
Q 011178 3 WMNHFSSLGCSLIT--HLYTHLVVLNFI-YMAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFY 78 (491)
Q Consensus 3 ~~~~~~~~G~~l~v--~d~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wY 78 (491)
|-.++..+||+|++ ||+|+|+|+|+| .++++|||||+++.+++|+||+++ +||+|+||++|+|+|++ +++|||||
T Consensus 46 ~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wy 124 (566)
T PLN02604 46 ITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLY 124 (566)
T ss_pred EEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEE
Confidence 34466778888887 478899999998 589999999999999999999998 99999999999999999 59999999
Q ss_pred eCCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcC--CCCCCCceEEEcCcCC-----
Q 011178 79 FPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSG--SDLPFPDGLVINGRGS----- 151 (491)
Q Consensus 79 H~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~vNG~~~----- 151 (491)
|||...|+.+||+|+|||++++..+.++ .+|+|.+|+|+||++++..++...+... ....+++..+|||++.
T Consensus 125 H~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~ 203 (566)
T PLN02604 125 HAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSL 203 (566)
T ss_pred eeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCcc
Confidence 9999999999999999999876555556 4689999999999999865543222211 1224679999999853
Q ss_pred ------------------CcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEE
Q 011178 152 ------------------NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYS 213 (491)
Q Consensus 152 ------------------~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~d 213 (491)
..+++++++|++|||||||+|..+.+.|+|++|+|+|||+||.+++|.+++.|.|++|||||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRyd 283 (566)
T PLN02604 204 VSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYS 283 (566)
T ss_pred ccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEE
Confidence 12378999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCc-ceEEEEEeecc-CCCcceEEEEEecCCCCCCCCC--CCCCCC-ccccchhhhhhhhccCCCCCCCCCCC
Q 011178 214 VLVRADQPPQ-GYYIVISTRFT-SQVLSATSVLHYSNSAGSVSGP--PPGGPT-TQIDWSLEQARSLRRNLTASGPRPNP 288 (491)
Q Consensus 214 v~v~~~~~~g-~~~i~~~~~~~-~~~~~~~ail~y~~~~~~~~~~--~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p 288 (491)
|+|++++++| +|||++..... .+...+.|||+|.+.......+ .+..+. .+....+..... +......+.
T Consensus 284 vlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~- 358 (566)
T PLN02604 284 VLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLA----IKARHGYIH- 358 (566)
T ss_pred EEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhc----ccccccCcC-
Confidence 9999998765 79999865432 2346788999998643211111 010111 000000110000 000000000
Q ss_pred CCCCCccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCC-CC----------CCCC
Q 011178 289 QGSYHYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPD-NP----------TGGG 357 (491)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~-~p----------~~~~ 357 (491)
......++++.+.......++...|+||+.+|..+..|++.+.+...++.|+.+.... .+ ....
T Consensus 359 -----~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (566)
T PLN02604 359 -----PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSN 433 (566)
T ss_pred -----CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccc
Confidence 0011345565543322223356799999999988888988765554455554221100 00 0112
Q ss_pred cceeeeEEeecCCcEEEEEEEcCC------CCCCceeccCCCeEEEeeccCCCCCCC-CCCcccCCCCceeeEEeCCCCE
Q 011178 358 AYLQTSVMAADFRGFAEVVFENPE------DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNLRDTISRCTVQVYPKSW 430 (491)
Q Consensus 358 ~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~v~p~~~ 430 (491)
.+.+..++.++.|++||++|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|++++|
T Consensus 434 ~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gw 513 (566)
T PLN02604 434 ATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGW 513 (566)
T ss_pred cccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCce
Confidence 233567889999999999999985 356999999999999999999887643 3468999999999999999999
Q ss_pred EEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCccCccCCCCCCcchhcccccC
Q 011178 431 TAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSANSWRDEYPIPSNALLCGRAVG 488 (491)
Q Consensus 431 ~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 488 (491)
++|||+|||||.|+|||||++|+..||+++|... +++ .+++|++++.|+.-+|
T Consensus 514 vvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~~----~~~~p~~~~~C~~~~~ 566 (566)
T PLN02604 514 TALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IER----VGKLPSSIMGCGESKG 566 (566)
T ss_pred EEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hhh----ccCCCCCcCccccCCC
Confidence 9999999999999999999999999999999754 333 4678999999987654
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.2e-89 Score=719.47 Aligned_cols=453 Identities=22% Similarity=0.358 Sum_probs=340.8
Q ss_pred CCcccCCCCeEEE--eeeEEEEEEecCC-CCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeC-CCccceeE
Q 011178 4 MNHFSSLGCSLIT--HLYTHLVVLNFIY-MAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVK-DQIGSYFY 78 (491)
Q Consensus 4 ~~~~~~~G~~l~v--~d~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~-~~~Gt~wY 78 (491)
..++..+||+|++ ||+|+|+|+|+|+ ++|+|||||++|.+++||||+++ |||||+||++|+|+|++. +++|||||
T Consensus 31 ~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WY 110 (538)
T TIGR03390 31 VVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFY 110 (538)
T ss_pred EECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEE
Confidence 3467788999987 4889999999997 89999999999999999999999 999999999999999985 58999999
Q ss_pred eCCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcC--CCCCCCceEEEcCcCC-----
Q 011178 79 FPSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSG--SDLPFPDGLVINGRGS----- 151 (491)
Q Consensus 79 H~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~--~~~~~~~~~~vNG~~~----- 151 (491)
|||.+.|+. ||+|+|||++++.. ++ .+|+|++|+|+||+++...++...+... ....++++++|||+..
T Consensus 111 HsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~ 186 (538)
T TIGR03390 111 HSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFY 186 (538)
T ss_pred ecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccccc
Confidence 999999986 59999999987533 33 4589999999999999877654333222 1235678999999952
Q ss_pred ---------CcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCce-eEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCC
Q 011178 152 ---------NANTFTVDQGKTYRFRISNVGISTSINFRIQGHK-MLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQP 221 (491)
Q Consensus 152 ---------~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~-~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~ 221 (491)
..++++|++|++|||||||+|..+.+.|+|++|+ |+|||+||.+++|..++.|.|++||||||+|+++++
T Consensus 187 ~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 187 AQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred ccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCc
Confidence 1368999999999999999999999999999999 999999999999999999999999999999999974
Q ss_pred -------CcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCc
Q 011178 222 -------PQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHY 294 (491)
Q Consensus 222 -------~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 294 (491)
+|+|||++.....++.....|+|+|.++........|..|. ++............|.+......+. .+
T Consensus 267 ~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~l~pl~~~~~~~--~~- 341 (538)
T TIGR03390 267 DELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPP--LPLPNSTYDWLEYELEPLSEENNQD--FP- 341 (538)
T ss_pred cccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCC--CCccCcchhhhheeeEecCccccCC--CC-
Confidence 48999999865444445678999998654222111111111 0000000000011222221110000 00
Q ss_pred cccccceEEEEeccccC--cCCeEeEEEcCeeeeC--CCCccccccccCCCCccccCCCCC-CCCCCCcceeeeEEeecC
Q 011178 295 GLINTTHTIRLQNTAPT--INGKQRYAVNSVSFIP--ADTPLKLADYFKIPGVFSVGSIPD-NPTGGGAYLQTSVMAADF 369 (491)
Q Consensus 295 ~~~~~~~~~~l~~~~~~--~~~~~~~~iNg~~f~~--~~~p~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~ 369 (491)
.....++++.+...... .++..+|++||.+|.. +..|+|...+.+. .......+ .+.......++.++.++.
T Consensus 342 ~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (538)
T TIGR03390 342 TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG---LPATPNYTAALANYGFDPETRAFPAKV 418 (538)
T ss_pred CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC---CCcCCCcccccccCCcCcCceEEEcCC
Confidence 01234666666554321 2456899999999975 7889876544321 00000000 000011223456788999
Q ss_pred CcEEEEEEEcCC--------CCCCceeccCCCeEEEeeccCCCCCCC-CCCcccCCCCceeeEEeC----------CCCE
Q 011178 370 RGFAEVVFENPE--------DTLQSWHIDGHNFFAVGMDGGEWTPAS-RLTYNLRDTISRCTVQVY----------PKSW 430 (491)
Q Consensus 370 g~~v~~~i~N~~--------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~v~----------p~~~ 430 (491)
|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++.||++|||+.|+ +++|
T Consensus 419 ~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~ 498 (538)
T TIGR03390 419 GEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGW 498 (538)
T ss_pred CCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCce
Confidence 999999999974 467999999999999999999998643 235788899999999996 7899
Q ss_pred EEEEEEccCcceeeeeecchhhhhcceEEEEEEecCCc
Q 011178 431 TAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYSSAN 468 (491)
Q Consensus 431 ~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 468 (491)
++|||++||||.|+|||||.+|+..||++.|.|.+.++
T Consensus 499 ~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 499 RAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred EEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 99999999999999999999999999999999987655
No 13
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.2e-75 Score=608.11 Aligned_cols=387 Identities=18% Similarity=0.197 Sum_probs=281.8
Q ss_pred CCCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeC
Q 011178 3 WMNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFP 80 (491)
Q Consensus 3 ~~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~ 80 (491)
|-.++..+|||||+. |+|+|+|+|+|+++|+|||||+++.+. +||++ ||+|+||++|+|+|++.+++|||||||
T Consensus 68 ~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p--q~~I~PG~s~~Y~f~~~q~aGT~WYH~ 143 (523)
T PRK10965 68 WGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP--QGIIAPGGKRTVTFTVDQPAATCWFHP 143 (523)
T ss_pred EEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC--CCCCCCCCEEEEEeccCCCCceEEEec
Confidence 445678899999984 899999999999999999999998664 99986 899999999999999975689999999
Q ss_pred Cc----cccccCCceeEEEEecCCCCCCCCCC--CCCcceEEeeecccCCHHHHHHHHhc--CCCCCCCceEEEcCcCCC
Q 011178 81 SL----AFHKAAGGYGGIKIASRPLIPVPFDP--PAGDFTILAGDWYKKNHTDLKAILDS--GSDLPFPDGLVINGRGSN 152 (491)
Q Consensus 81 H~----~~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~vNG~~~~ 152 (491)
|. ..|+++||+|+|||+++++.+.+++. ..+|++|+|+||+++.++++...... ......+|.++|||+.
T Consensus 144 H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-- 221 (523)
T PRK10965 144 HQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-- 221 (523)
T ss_pred CCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc--
Confidence 96 59999999999999998654333332 45699999999999876654221111 1124568999999998
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEE-eCceeEEEEecCccC-CCCccCeEEEcCCceEEEEEEeCCCCcceEEEEE
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRI-QGHKMLLVEVEGTHT-LQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIS 230 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i-~~~~~~via~DG~~~-~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~ 230 (491)
.|.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|..++.|.|+|||||||+|++++ .+.|.|.+.
T Consensus 222 ~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~ 299 (523)
T PRK10965 222 YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLVTL 299 (523)
T ss_pred cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEEEe
Confidence 8888885 579999999999999999998 899999999999986 899999999999999999999984 577998876
Q ss_pred eeccC-----CCcceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEE
Q 011178 231 TRFTS-----QVLSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRL 305 (491)
Q Consensus 231 ~~~~~-----~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l 305 (491)
..... .......++++.........++|... ....+.+.+. ....|++.+
T Consensus 300 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l------------------~~~~~~~~~~-------~~~~r~~~l 354 (523)
T PRK10965 300 PVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL------------------ASLPALPSLE-------GLTVRRLQL 354 (523)
T ss_pred cccCcccccccCCCceeEEEEeccCcCCCCcCChhh------------------ccCCCCCccc-------ccceeEEEE
Confidence 43211 01113355555533211111122100 0000000000 000111111
Q ss_pred eccc--------------c--------------Cc---------C-----Ce-----EeEEEcCeeeeCCCCcccccccc
Q 011178 306 QNTA--------------P--------------TI---------N-----GK-----QRYAVNSVSFIPADTPLKLADYF 338 (491)
Q Consensus 306 ~~~~--------------~--------------~~---------~-----~~-----~~~~iNg~~f~~~~~p~~~~~~~ 338 (491)
.... . .. . +. ..|+|||++|.. +.|
T Consensus 355 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-~~~------- 426 (523)
T PRK10965 355 SMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-NKP------- 426 (523)
T ss_pred eeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC-CCc-------
Confidence 1000 0 00 0 00 125788888742 111
Q ss_pred CCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCCC-CCCceeccCCCeEEEeeccCCCCCCCCCCcccCCC
Q 011178 339 KIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDT 417 (491)
Q Consensus 339 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p 417 (491)
.+.++.|++++|+|.|.+. +.|||||||++|||+++++... ....+
T Consensus 427 -------------------------~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~--------~~~~~ 473 (523)
T PRK10965 427 -------------------------MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPP--------AAHRA 473 (523)
T ss_pred -------------------------ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCC--------Ccccc
Confidence 1457899999999999985 6899999999999999964321 12345
Q ss_pred CceeeEEeCCCCEEEEEEEc----cCcceeeeeecchhhhhcceEEEEEEe
Q 011178 418 ISRCTVQVYPKSWTAVYVPL----DNVGMWNIRSENWARQYLGQQFYLRVY 464 (491)
Q Consensus 418 ~~rDTv~v~p~~~~~irf~a----dnpG~w~~HCHil~H~d~GMm~~~~V~ 464 (491)
.|||||.|++ +.++|++++ +++|.||||||||+|||.|||..|+|.
T Consensus 474 ~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 474 GWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred ccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 7999999987 667776665 467799999999999999999999984
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.1e-74 Score=605.74 Aligned_cols=404 Identities=21% Similarity=0.226 Sum_probs=296.4
Q ss_pred CCCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEe
Q 011178 3 WMNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYF 79 (491)
Q Consensus 3 ~~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 79 (491)
|-.++..+||+|++. |+|+|+|+|+|+++|+|||||+++. +.+||+|+ +||+|+||++|+|+|++. ++||||||
T Consensus 67 ~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~PG~s~~Y~f~~~-~~GTyWYH 143 (587)
T TIGR01480 67 ITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIAPGETFTYRFPVR-QSGTYWYH 143 (587)
T ss_pred EEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccCCCCeEEEEEECC-CCeeEEEe
Confidence 345678899999884 8999999999999999999999974 46999999 999999999999999994 89999999
Q ss_pred CCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHh----------------------cCC-
Q 011178 80 PSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILD----------------------SGS- 136 (491)
Q Consensus 80 ~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----------------------~~~- 136 (491)
||...|+.+||+|+|||++++.++. .+|+|++|+|+||++.+..++...+. .|.
T Consensus 144 sH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~ 220 (587)
T TIGR01480 144 SHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLK 220 (587)
T ss_pred cCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhcccccc
Confidence 9999999999999999998654333 45899999999999876554422111 010
Q ss_pred --------C-------C------CCCceEEEcCcCC-CcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCc
Q 011178 137 --------D-------L------PFPDGLVINGRGS-NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGT 194 (491)
Q Consensus 137 --------~-------~------~~~~~~~vNG~~~-~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~ 194 (491)
. . .....+||||+.. ..+++.+++|++|||||||+|+.+.+.|+|+||+|+||++||.
T Consensus 221 ~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~ 300 (587)
T TIGR01480 221 QTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQ 300 (587)
T ss_pred ccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCc
Confidence 0 0 0012489999973 2356999999999999999999999999999999999999999
Q ss_pred cCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCCCCC---ccccc-h--
Q 011178 195 HTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPT---TQIDW-S-- 268 (491)
Q Consensus 195 ~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~---~~~~~-~-- 268 (491)
+++|+.++.+.|+|||||||+|+++ ..|.|+|++..... ...+.++|++.+.......+++..|. .+... .
T Consensus 301 ~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~ 377 (587)
T TIGR01480 301 YVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMH 377 (587)
T ss_pred CcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCCCCCCCCccccChhhccccccc
Confidence 9999999999999999999999987 45789999876432 23677788876431111111111110 01000 0
Q ss_pred -------hhh--hhhhcc----------C---C--CCC----------------CCCC-------------CCCCCCC--
Q 011178 269 -------LEQ--ARSLRR----------N---L--TAS----------------GPRP-------------NPQGSYH-- 293 (491)
Q Consensus 269 -------~~~--~~~~~~----------~---l--~~~----------------~~~~-------------~p~~~~~-- 293 (491)
+.. ...... + + ... ...+ ...+...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 457 (587)
T TIGR01480 378 HGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYA 457 (587)
T ss_pred ccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehh
Confidence 000 000000 0 0 000 0000 0000000
Q ss_pred --------ccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEE
Q 011178 294 --------YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVM 365 (491)
Q Consensus 294 --------~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 365 (491)
.....++|++.+.... .-....|+|||+.|.+ .. .+
T Consensus 458 ~l~~~~~~~~~~~p~r~~~~~L~g--~m~~~~wtiNG~~~~~-~~---------------------------------pl 501 (587)
T TIGR01480 458 DLHSLFPPPDGRAPGREIELHLTG--NMERFAWSFDGEAFGL-KT---------------------------------PL 501 (587)
T ss_pred hccccccccCcCCCCceEEEEEcC--CCceeEEEECCccCCC-CC---------------------------------ce
Confidence 0012355666655421 1135679999988742 11 14
Q ss_pred eecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeee
Q 011178 366 AADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNI 445 (491)
Q Consensus 366 ~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~ 445 (491)
.++.|++|+|+|.|.+.+.|||||||+.|+++..+ |.+ +.++||+.|+|++++.++|++||||.|+|
T Consensus 502 ~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~ 568 (587)
T TIGR01480 502 RFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF------------QVRKHTVDVPPGGKRSFRVTADALGRWAY 568 (587)
T ss_pred EecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc------------cccCCceeeCCCCEEEEEEECCCCeEEEE
Confidence 57899999999999999999999999999998653 321 34789999999999999999999999999
Q ss_pred eecchhhhhcceEEEEEEe
Q 011178 446 RSENWARQYLGQQFYLRVY 464 (491)
Q Consensus 446 HCHil~H~d~GMm~~~~V~ 464 (491)
|||++.|++.|||..++|.
T Consensus 569 HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 569 HCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred cCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.8e-73 Score=589.53 Aligned_cols=378 Identities=17% Similarity=0.151 Sum_probs=274.2
Q ss_pred CCCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeC
Q 011178 3 WMNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFP 80 (491)
Q Consensus 3 ~~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~ 80 (491)
|-.++..+|||||+. |+|+|+|+|+|+++|+|||||+++++. .+||+ +++|+||++|+|+|++.+++|||||||
T Consensus 68 ~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~---~~~I~PG~~~~y~f~~~~~aGT~WYH~ 143 (471)
T PRK10883 68 WGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGP---ARMMSPNADWAPVLPIRQNAATCWYHA 143 (471)
T ss_pred EEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCc---cccCCCCCeEEEEEecCCCceeeEEcc
Confidence 345677899999884 899999999999999999999998765 56775 478999999999999976799999999
Q ss_pred Ccc----ccccCCceeEEEEecCCCCCCCCCC--CCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCCcc
Q 011178 81 SLA----FHKAAGGYGGIKIASRPLIPVPFDP--PAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNAN 154 (491)
Q Consensus 81 H~~----~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~~~ 154 (491)
|.+ .|+++||+|+|||+++.+.+.+++. ..+|++|+|+||+++....... .........+|.++|||+. .|
T Consensus 144 H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~~~~~g~~gd~~lvNG~~--~p 220 (471)
T PRK10883 144 NTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NEPGSGGFVGDTLLVNGVQ--SP 220 (471)
T ss_pred CCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-cccccCCccCCeeEECCcc--CC
Confidence 975 5999999999999997654334332 3459999999999986543211 1112234578999999999 89
Q ss_pred eEEEeCCCEEEEEEEEcCCCCeEeEEE-eCceeEEEEecCccC-CCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 155 TFTVDQGKTYRFRISNVGISTSINFRI-QGHKMLLVEVEGTHT-LQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 155 ~~~v~~g~~~rlR~iN~~~~~~~~~~i-~~~~~~via~DG~~~-~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
.++|++| +|||||||+|+.+.+.|+| ++|+|+|||.||+++ +|..++.|.|+|||||||+|++++ .+.+.|.+...
T Consensus 221 ~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~ 298 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEA 298 (471)
T ss_pred eEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCc
Confidence 9999875 8999999999999999999 899999999997765 899999999999999999999974 34566655321
Q ss_pred ccCC-C------c----ceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccce
Q 011178 233 FTSQ-V------L----SATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTH 301 (491)
Q Consensus 233 ~~~~-~------~----~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~ 301 (491)
.... . . ....++++..... .+..+ . .+...+.+.. ..+ ......+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~----------~~p~~l~~~~--~~~------~~~~~~~ 354 (471)
T PRK10883 299 AGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----LPLVT-D----------NLPMRLLPDE--IME------GSPIRSR 354 (471)
T ss_pred cccccccccccCCccccccceeEEEEcccc-----ccCCC-C----------cCChhhcCCC--CCC------CCCcceE
Confidence 1000 0 0 0011222221100 00000 0 0000011100 000 0011223
Q ss_pred EEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCC
Q 011178 302 TIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPE 381 (491)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~ 381 (491)
++.+.. ..|.|||++|.+...+ +.++.|++++|.|.|.
T Consensus 355 ~~~l~~--------~~~~INg~~~~~~~~~---------------------------------~~~~~g~~e~W~~~n~- 392 (471)
T PRK10883 355 EISLGD--------DLPGINGALWDMNRID---------------------------------VTAQQGTWERWTVRAD- 392 (471)
T ss_pred EEEecC--------CcCccCCcccCCCcce---------------------------------eecCCCCEEEEEEECC-
Confidence 444421 2478999998531111 3568899999999886
Q ss_pred CCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcc----eeeeeecchhhhhcce
Q 011178 382 DTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVG----MWNIRSENWARQYLGQ 457 (491)
Q Consensus 382 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG----~w~~HCHil~H~d~GM 457 (491)
+.|||||||+.|||+++++... ...+..|||||.|+ +.++|+++++++| .||||||||+|||.||
T Consensus 393 -~~HP~HlHg~~FqVl~~~G~~~--------~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GM 461 (471)
T PRK10883 393 -MPQAFHIEGVMFLIRNVNGAMP--------FPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGS 461 (471)
T ss_pred -CCcCEeECCccEEEEEecCCCC--------CccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCC
Confidence 5899999999999999964321 11224699999995 4699999999887 8999999999999999
Q ss_pred EEEEEEecC
Q 011178 458 QFYLRVYSS 466 (491)
Q Consensus 458 m~~~~V~~~ 466 (491)
|..|+|.++
T Consensus 462 M~~~~V~~~ 470 (471)
T PRK10883 462 IGQLLVNPA 470 (471)
T ss_pred ccCeEEecC
Confidence 999999653
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-59 Score=489.65 Aligned_cols=390 Identities=21% Similarity=0.221 Sum_probs=280.6
Q ss_pred CCCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEe
Q 011178 3 WMNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYF 79 (491)
Q Consensus 3 ~~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 79 (491)
|..+.+.+||+||++ |+|+|+++|.|.++|+|||||+.++ +.+||++. +|+++.||++++|.|+.. ++||||||
T Consensus 55 ~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~-~~gT~wyh 131 (451)
T COG2132 55 WGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD-VPGTYWYH 131 (451)
T ss_pred EEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC-CCcceEec
Confidence 455668999999985 7999999999988899999998875 56999988 999999999999999994 68899999
Q ss_pred CCccccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHhcCCCCCCCceEEEcCcCCCcceEEEe
Q 011178 80 PSLAFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILDSGSDLPFPDGLVINGRGSNANTFTVD 159 (491)
Q Consensus 80 ~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~vNG~~~~~~~~~v~ 159 (491)
+|.+.|+++||+|++||+++.+.+. .+|++.++++.+|........... ........++..+|||+. .+.+.++
T Consensus 132 ~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~--~p~~~~~ 205 (451)
T COG2132 132 PHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI--LPFKAVP 205 (451)
T ss_pred cCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc--cceeecC
Confidence 9999999999999999999865444 347777777777776654333211 112244567899999977 5666665
Q ss_pred CCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeeccCCCcc
Q 011178 160 QGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFTSQVLS 239 (491)
Q Consensus 160 ~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~ 239 (491)
+++||||++|+++.+.+.+++.+++|+||++||.++++..++.+.|+|||||||++++++ .+.+.|.+....... .
T Consensus 206 -~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~~~~~--~ 281 (451)
T COG2132 206 -GGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGEDMPD--T 281 (451)
T ss_pred -CCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccccCCc--e
Confidence 557999999999888999999999999999999999888899999999999999999984 566777765511111 1
Q ss_pred eEEEEEecCCCCCC---CCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccccccceEEEEeccccCcCCeE
Q 011178 240 ATSVLHYSNSAGSV---SGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINTTHTIRLQNTAPTINGKQ 316 (491)
Q Consensus 240 ~~ail~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (491)
..+........... .......+..+. ...... ..+......+.+ .....+.+.. ..+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~--~~~~~~~~~~~~---------~~~~~~~l~~----~~~~~ 343 (451)
T COG2132 282 LKGFRAPNPILTPSYPVLNGRVGAPTGDM---ADHAPV--GLLVTILVEPGP---------NRDTDFHLIG----GIGGY 343 (451)
T ss_pred eeeeeccccccccccccccccccCCCcch---hhcccc--ccchhhcCCCcc---------cccccchhhc----ccccc
Confidence 11221111100000 000000110000 000000 000000000000 0011111111 12345
Q ss_pred eEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEE
Q 011178 317 RYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFA 396 (491)
Q Consensus 317 ~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~V 396 (491)
.|.+|++.|.+. ...+.++.|++++|+|.|.+.+.|||||||+.|+|
T Consensus 344 ~~~~n~~~~~~~---------------------------------~~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v 390 (451)
T COG2132 344 VWAINGKAFDDN---------------------------------RVTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQV 390 (451)
T ss_pred cccccCccCCCC---------------------------------cCceeecCCCEEEEEEECCCCCccCeEEcCceEEE
Confidence 688888777431 11246788999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeeecchhhhhcceEEEEEEec
Q 011178 397 VGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQYLGQQFYLRVYS 465 (491)
Q Consensus 397 l~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 465 (491)
++.+ . ......+.||||+.+.+++.++|+|.+++||.|+||||+++|++.|||..+.|..
T Consensus 391 ~~~~-~--------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 391 LSGD-A--------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EecC-C--------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 9997 1 1233456899999999999999999999999999999999999999999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.1e-42 Score=340.76 Aligned_cols=235 Identities=17% Similarity=0.154 Sum_probs=189.8
Q ss_pred CCCcccCCCCeEEE--eeeEEEEEEecCC--CCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCcccee
Q 011178 3 WMNHFSSLGCSLIT--HLYTHLVVLNFIY--MAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYF 77 (491)
Q Consensus 3 ~~~~~~~~G~~l~v--~d~v~i~~~N~l~--~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~w 77 (491)
|-.++..+||+|++ ||+|+|+|+|+++ .++++||||.. ++||++. +| |.||++|+|+|++ +++||||
T Consensus 50 ~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~ 121 (311)
T TIGR02376 50 MTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA-TRPGAFV 121 (311)
T ss_pred EEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc-CCCEEEE
Confidence 44567789999987 4899999999986 57899999963 4788876 66 9999999999999 5899999
Q ss_pred EeCCc----cccccCCceeEEEEecCCCCCCCCCCCCCcceEEeeecccCCHHHHHHHHh-c--CCCCCCCceEEEcCcC
Q 011178 78 YFPSL----AFHKAAGGYGGIKIASRPLIPVPFDPPAGDFTILAGDWYKKNHTDLKAILD-S--GSDLPFPDGLVINGRG 150 (491)
Q Consensus 78 YH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~-~--~~~~~~~~~~~vNG~~ 150 (491)
||||. ..|+.+||+|+|||++++..+ ..|+|++|+++||+++.......... . ......+++++|||+.
T Consensus 122 YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~ 197 (311)
T TIGR02376 122 YHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAV 197 (311)
T ss_pred EEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCcc
Confidence 99995 479999999999999865322 45899999999999975432110000 0 0012467899999994
Q ss_pred C-CcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCc--cCeEEEcCCceEEEEEEeCCCCcceEE
Q 011178 151 S-NANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNT--YDSLDIHLGQSYSVLVRADQPPQGYYI 227 (491)
Q Consensus 151 ~-~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~--~~~l~l~pGeR~dv~v~~~~~~g~~~i 227 (491)
. ..+.+++++|+++||||||+|..+.+.|++.++.+++|+.||.++.+.. ++++.|+||||+||+|++++ +|.|++
T Consensus 198 ~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~ 276 (311)
T TIGR02376 198 GALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAY 276 (311)
T ss_pred CCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEE
Confidence 2 1467899999999999999999999999999999999999999997644 79999999999999999995 799999
Q ss_pred EEEeeccCCCcceEEEEEecCCC
Q 011178 228 VISTRFTSQVLSATSVLHYSNSA 250 (491)
Q Consensus 228 ~~~~~~~~~~~~~~ail~y~~~~ 250 (491)
++............|+|+|++..
T Consensus 277 ~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 277 VDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred ECcHHHHHHhCCCEEEEEECCCC
Confidence 98765432233578999998654
No 18
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=6e-31 Score=230.67 Aligned_cols=106 Identities=26% Similarity=0.437 Sum_probs=96.6
Q ss_pred eeeeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC
Q 011178 360 LQTSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN 439 (491)
Q Consensus 360 ~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn 439 (491)
.+..++.++.|++|+|+|+|.+...|||||||++|+|++++.+.++......++..+|.||||+.|+++++++|||+++|
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 35677899999999999999999999999999999999998877665555567889999999999999999999999999
Q ss_pred cceeeeeecchhhhhcceEEEEEEec
Q 011178 440 VGMWNIRSENWARQYLGQQFYLRVYS 465 (491)
Q Consensus 440 pG~w~~HCHil~H~d~GMm~~~~V~~ 465 (491)
||.|+|||||++|+|.|||+.|+|.+
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999865
No 19
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.96 E-value=1.3e-30 Score=219.81 Aligned_cols=96 Identities=29% Similarity=0.522 Sum_probs=88.2
Q ss_pred CCcccCCCCeEEEe--eeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEeC
Q 011178 4 MNHFSSLGCSLITH--LYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFP 80 (491)
Q Consensus 4 ~~~~~~~G~~l~v~--d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~ 80 (491)
-.++..+||+||+. |+|+|+|+|+|+++++|||||+++...+|+||+++ +||+|.||++|+|+|++++++|||||||
T Consensus 18 ~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~ 97 (117)
T PF07732_consen 18 TYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHS 97 (117)
T ss_dssp EETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEE
T ss_pred EECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEee
Confidence 34677899999885 89999999999999999999999999899999999 9999999999999999976699999999
Q ss_pred CccccccCCceeEEEEecC
Q 011178 81 SLAFHKAAGGYGGIKIASR 99 (491)
Q Consensus 81 H~~~q~~~Gl~G~liV~~~ 99 (491)
|...|..+||+|+|||+++
T Consensus 98 H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 98 HVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp CSTTHHHTTEEEEEEEE-T
T ss_pred CCCchhcCcCEEEEEEcCC
Confidence 9998877999999999986
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=3.7e-27 Score=211.21 Aligned_cols=139 Identities=37% Similarity=0.676 Sum_probs=115.3
Q ss_pred CcceEEeeecccCCHHHHHH-HHhcC----CCCCCCceEEEcCcCC-----------CcceEEEeCCCEEEEEEEEcCCC
Q 011178 111 GDFTILAGDWYKKNHTDLKA-ILDSG----SDLPFPDGLVINGRGS-----------NANTFTVDQGKTYRFRISNVGIS 174 (491)
Q Consensus 111 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~~vNG~~~-----------~~~~~~v~~g~~~rlR~iN~~~~ 174 (491)
.|++|+|+||++++...+.. .+..+ ..++++++++|||++. ..+++++++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 37899999999987665533 33221 2377899999999653 25899999999999999999999
Q ss_pred CeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEeecc----CCCcceEEEEEecCC
Q 011178 175 TSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTRFT----SQVLSATSVLHYSNS 249 (491)
Q Consensus 175 ~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~----~~~~~~~ail~y~~~ 249 (491)
+.+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++|+|+|++..... .....+.|+|+|.++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999778999999963211 234678999999863
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.65 E-value=3.2e-16 Score=137.21 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCCeEEE--eeeEEEEEEecCC---CCCeeeecccCCCCCCCCCCCCC-CCCCCCCC---C-e--EEEEEEeCCCccce
Q 011178 9 SLGCSLIT--HLYTHLVVLNFIY---MAPLITLNGVQQRRNSWQDGVYG-TNCPIPPG---K-N--FTYVLQVKDQIGSY 76 (491)
Q Consensus 9 ~~G~~l~v--~d~v~i~~~N~l~---~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG---~-~--~~Y~f~~~~~~Gt~ 76 (491)
..||+|+| ||+|+++|+|.++ ....||+||...+..+.|||++. +||+|.|+ + . .++.|+++ ++|||
T Consensus 49 ~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~-~aGty 127 (148)
T TIGR03095 49 LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFS-TAGTY 127 (148)
T ss_pred CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECC-CCeEE
Confidence 45677776 4788999999965 33556666655444455999988 99998884 2 1 24455553 79999
Q ss_pred eEeCCccccccCCceeEEEEe
Q 011178 77 FYFPSLAFHKAAGGYGGIKIA 97 (491)
Q Consensus 77 wYH~H~~~q~~~Gl~G~liV~ 97 (491)
|||||...|+.+||+|+|||+
T Consensus 128 wyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 128 WYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEcCChhHHHCCCEEEEEEC
Confidence 999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.62 E-value=8.7e-14 Score=137.64 Aligned_cols=243 Identities=12% Similarity=0.039 Sum_probs=154.4
Q ss_pred CceEEEcCcCCCcceEEEeCCCEEEEEEEEcCC-CCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeC
Q 011178 141 PDGLVINGRGSNANTFTVDQGKTYRFRISNVGI-STSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 219 (491)
Q Consensus 141 ~~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~-~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~ 219 (491)
.+.+++||+.. .|+|++++|+++++++.|... ...+.++++++. +.||... ...|.||+++.+.++++
T Consensus 47 ~~~~~~nG~~p-GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~ 115 (311)
T TIGR02376 47 YQAMTFDGSVP-GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT 115 (311)
T ss_pred EEEEEECCccc-CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC
Confidence 35789999873 699999999999999999863 246788888763 4566431 23389999999999998
Q ss_pred CCCcceEEEEEeec--cCCC-cceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCccc
Q 011178 220 QPPQGYYIVISTRF--TSQV-LSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGL 296 (491)
Q Consensus 220 ~~~g~~~i~~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 296 (491)
.+|.||..++... ..+. ....+.|.+.... ..+. .+.+..+. .-+|.+...... .
T Consensus 116 -~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-----~~~~---~d~e~~l~---l~d~~~~~~~~~---~------- 173 (311)
T TIGR02376 116 -RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-----GLPE---YDKEYYIG---ESDLYTPKDEGE---G------- 173 (311)
T ss_pred -CCEEEEEEcCCCCchhHHhhcCcceEEEeeccC-----CCcC---cceeEEEe---eeeEeccccccc---c-------
Confidence 5899999887431 1121 1234455554321 1110 11110000 001111100000 0
Q ss_pred cccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEE
Q 011178 297 INTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVV 376 (491)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~ 376 (491)
..+..............+.|||+.+.. .| .+.++.|++++|.
T Consensus 174 ----~~~~~~~~~~~~~~~~~~~iNG~~~~~--~~--------------------------------~~~v~~G~~~RlR 215 (311)
T TIGR02376 174 ----GAYEDDVAAMRTLTPTHVVFNGAVGAL--TG--------------------------------DNALTAGVGERVL 215 (311)
T ss_pred ----ccccchHHHHhcCCCCEEEECCccCCC--CC--------------------------------CcccccCCcEEEE
Confidence 000000000000111357788875410 00 1246779999999
Q ss_pred EEcCCC-CCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCC-ceeeEEeCCCCEEEEEEEccCcceeeeeecchhhh-
Q 011178 377 FENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTI-SRCTVQVYPKSWTAVYVPLDNVGMWNIRSENWARQ- 453 (491)
Q Consensus 377 i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~v~p~~~~~irf~adnpG~w~~HCHil~H~- 453 (491)
|.|.+. ..+.||++|++|.++... |.+- ..+. ..||+.|.||+.+.|.|+++.||.|++|||...+.
T Consensus 216 iiNa~~~~~~~~~~~g~~~~~v~~D-G~~~---------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~ 285 (311)
T TIGR02376 216 FVHSQPNRDSRPHLIGGHGDYVWVT-GKFA---------NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAF 285 (311)
T ss_pred EEcCCCCCCCCCeEecCCceEEEEC-Cccc---------CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHH
Confidence 999976 459999999999999994 4321 1122 36999999999999999999999999999999887
Q ss_pred hcceEEEEEEe
Q 011178 454 YLGQQFYLRVY 464 (491)
Q Consensus 454 d~GMm~~~~V~ 464 (491)
..||++.++|.
T Consensus 286 ~~g~~~~i~~~ 296 (311)
T TIGR02376 286 EKGAAAQVKVE 296 (311)
T ss_pred hCCCEEEEEEC
Confidence 77999999875
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.31 E-value=2.8e-12 Score=136.39 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=67.6
Q ss_pred EEEeeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCC---CCCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCCc
Q 011178 14 LITHLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVY---GTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGG 90 (491)
Q Consensus 14 l~v~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~---~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl 90 (491)
++.||+|+|+|.|.+..++.|||||+..... ..||.. .....|+||++++|+|++ +++|+||||||...|...||
T Consensus 503 v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM 580 (587)
T TIGR01480 503 FNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGM 580 (587)
T ss_pred ecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcC
Confidence 3345788899999999999999999975432 235632 223779999999999999 58999999999999999999
Q ss_pred eeEEEEe
Q 011178 91 YGGIKIA 97 (491)
Q Consensus 91 ~G~liV~ 97 (491)
++.+.|.
T Consensus 581 ~~~~~v~ 587 (587)
T TIGR01480 581 FREVTVR 587 (587)
T ss_pred cEEEEeC
Confidence 9999874
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.05 E-value=1.3e-08 Score=108.63 Aligned_cols=233 Identities=15% Similarity=0.154 Sum_probs=142.9
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEE-EecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~vi-a~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..+++||+.. .|+|+++.|+++++++.|--.. ...+|.+|....-- ..||.+- +..-.|.||+.+...+++.+
T Consensus 23 ~~~~~NG~~P-GP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~~----vTq~pI~PG~s~~Y~f~~~~ 96 (539)
T TIGR03389 23 SILTVNGKFP-GPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPAY----ITQCPIQPGQSYVYNFTITG 96 (539)
T ss_pred EEEEECCccc-CCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCcc----cccCCcCCCCeEEEEEEecC
Confidence 5799999974 7999999999999999999764 45556555432111 2577542 34556899999999999854
Q ss_pred CCcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCCC-CCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCCc
Q 011178 221 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGG-PTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 294 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 294 (491)
.+|+||...+... +.....|-|...+... .+.|.. ...+. ||.......+.
T Consensus 97 ~~GT~WYHsH~~~--~~~Gl~G~lIV~~~~~---~~~~~~~~d~e~~l~l~Dw~~~~~~~~~------------------ 153 (539)
T TIGR03389 97 QRGTLWWHAHISW--LRATVYGAIVILPKPG---VPYPFPKPDREVPIILGEWWNADVEAVI------------------ 153 (539)
T ss_pred CCeeEEEecCchh--hhccceEEEEEcCCCC---CCCCCCCCCceEEEEecccccCCHHHHH------------------
Confidence 6899999887532 2122344444433221 111100 00010 11100000000
Q ss_pred cccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEE
Q 011178 295 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 374 (491)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 374 (491)
.. . +.... ...-...+.|||+..... .+. + ....+++++.|++++
T Consensus 154 -----~~-~-~~~~~-~~~~~d~~liNG~~~~~~----------------~~~-----~------~~~~~i~v~~G~~~R 198 (539)
T TIGR03389 154 -----NQ-A-NQTGG-APNVSDAYTINGHPGPLY----------------NCS-----S------KDTFKLTVEPGKTYL 198 (539)
T ss_pred -----HH-H-HhcCC-CCCccceEEECCCcCCCC----------------CCC-----C------CCceEEEECCCCEEE
Confidence 00 0 00000 000112367788753100 000 0 013458899999999
Q ss_pred EEEEcCCCC-CCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cceeeeeecc
Q 011178 375 VVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIRSEN 449 (491)
Q Consensus 375 ~~i~N~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG~w~~HCHi 449 (491)
|+|+|.+.. .+-|||+||.|.|++.. |.+ ..|...|++.|.+|+.+.|.++++. +|.|.++-+.
T Consensus 199 lRlINa~~~~~~~~~idgH~~~VIa~D-G~~----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 199 LRIINAALNDELFFAIANHTLTVVEVD-ATY----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred EEEEeccCCceEEEEECCCeEEEEEeC-Ccc----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 999999754 48899999999999996 432 2466789999999999999999975 8998887554
No 25
>PLN02604 oxidoreductase
Probab=99.00 E-value=1.7e-09 Score=115.86 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred EeecCCcEEEEEEEcCC-CCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 365 MAADFRGFAEVVFENPE-DTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 365 ~~~~~g~~v~~~i~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
+.++.|+++++.+.|.. ...|+||+||... .+. .|... ........|+||+..+++|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~DG---------~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFDG---------TEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---ccccC---------CCccccCccCCCCeEEEEEEcCCCEEE
Confidence 67889999999999996 5689999999942 111 11000 011244578999999999999999999
Q ss_pred eeeecchhhhhcceEEEEEEecCC
Q 011178 444 NIRSENWARQYLGQQFYLRVYSSA 467 (491)
Q Consensus 444 ~~HCHil~H~d~GMm~~~~V~~~~ 467 (491)
.||||...|.+.||+..+.|.+++
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEecC
Confidence 999999999999999999998654
No 26
>PLN02835 oxidoreductase
Probab=98.95 E-value=6.8e-08 Score=102.59 Aligned_cols=218 Identities=16% Similarity=0.120 Sum_probs=133.5
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+.. .|+|++++|+++++++.|--.. ...+|.+|..+.- -..||.+. .+-.|.||+.+...|++.+
T Consensus 49 ~~~~~NG~~P-GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~ 121 (539)
T PLN02835 49 QVILINGQFP-GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKD 121 (539)
T ss_pred EEEEECCcCC-CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECC
Confidence 4799999974 7999999999999999999754 4556666654332 23688543 2457999999999998754
Q ss_pred CCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCC
Q 011178 221 PPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYH 293 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 293 (491)
.+|+||...+.. .+. ....|.|....... .+.|. ....+. ||.......+...+.
T Consensus 122 q~GT~WYHsH~~--~q~~~Gl~G~lIV~~~~~---~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~------------- 183 (539)
T PLN02835 122 QIGTFTYFPSTL--FHKAAGGFGAINVYERPR---IPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLD------------- 183 (539)
T ss_pred CCEeEEEEeCcc--chhcCcccceeEEeCCCC---CCcCCCCCCceEEEEeeccccCCHHHHHHHhh-------------
Confidence 589999987743 221 12233333322110 01110 000010 111000000000000
Q ss_pred ccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEE
Q 011178 294 YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFA 373 (491)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 373 (491)
... ...-.....|||+.. ..+.++.|+++
T Consensus 184 -------------~g~-~~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~y 212 (539)
T PLN02835 184 -------------SGK-VLPFPDGVLINGQTQ-------------------------------------STFSGDQGKTY 212 (539)
T ss_pred -------------cCC-CCCCCceEEEccccC-------------------------------------ceEEECCCCEE
Confidence 000 000011244555421 12567899999
Q ss_pred EEEEEcCCCC-CCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cceeeee
Q 011178 374 EVVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIR 446 (491)
Q Consensus 374 ~~~i~N~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG~w~~H 446 (491)
+|+|+|.+.. ..-|||.||+|.|++..+ .+ ..|...|++.+.+|+.+.+.++++. +|.|-++
T Consensus 213 RlRliNa~~~~~~~f~i~gH~~~VI~~DG-~~----------v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 213 MFRISNVGLSTSLNFRIQGHTMKLVEVEG-SH----------TIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred EEEEEEcCCCccEEEEECCCEEEEEEECC-cc----------CCCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 9999999865 599999999999999953 22 2245679999999999999999864 6876665
No 27
>PLN02792 oxidoreductase
Probab=98.89 E-value=1.1e-07 Score=100.73 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=133.7
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEE---ecCccCCCCccCeEEEcCCceEEEEEEe
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVE---VEGTHTLQNTYDSLDIHLGQSYSVLVRA 218 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via---~DG~~~~p~~~~~l~l~pGeR~dv~v~~ 218 (491)
..++|||+.. .|+|++++|+++++++.|-... ...+| -|-+.+.. .||.+. .+-.|.||+.+...+++
T Consensus 36 ~~~~vNGq~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiH--WHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 36 RGILINGQFP-GPEIRSLTNDNLVINVHNDLDE-PFLLS--WNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQV 106 (536)
T ss_pred EEEEECCCCC-CCcEEEECCCEEEEEEEeCCCC-CcCEe--CCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEe
Confidence 4799999975 7999999999999999999753 44444 44444433 788533 23579999999999998
Q ss_pred CCCCcceEEEEEeeccCCCcceEEEE-EecCCCCCCCCCCCCCCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCC
Q 011178 219 DQPPQGYYIVISTRFTSQVLSATSVL-HYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSY 292 (491)
Q Consensus 219 ~~~~g~~~i~~~~~~~~~~~~~~ail-~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~ 292 (491)
++.+|+||...+.... ......|-| .+..... ..+.+. +..+. ||.......+.
T Consensus 107 ~~q~GT~WYHsH~~~q-~~~Gl~G~liI~~~~~~--~~p~~~-~d~e~~i~l~Dw~~~~~~~~~---------------- 166 (536)
T PLN02792 107 KDQVGSYFYFPSLAVQ-KAAGGYGSLRIYSLPRI--PVPFPE-PAGDFTFLIGDWYRRNHTTLK---------------- 166 (536)
T ss_pred CCCccceEEecCcchh-hhcccccceEEeCCccc--CcCCCc-ccceeEEEecccccCCHHHHH----------------
Confidence 6458999998875321 111233322 2221110 011110 00110 11100000000
Q ss_pred CccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcE
Q 011178 293 HYGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGF 372 (491)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 372 (491)
.. +..............|||+... ...+++++.|++
T Consensus 167 --------~~--~~~g~~~~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~ 202 (536)
T PLN02792 167 --------KI--LDGGRKLPLMPDGVMINGQGVS----------------------------------YVYSITVDKGKT 202 (536)
T ss_pred --------HH--hhccCcCCCCCCEEEEeccCCC----------------------------------CcceEEECCCCE
Confidence 00 0000000000123456665310 013467899999
Q ss_pred EEEEEEcCCCCC-CceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cceeeee
Q 011178 373 AEVVFENPEDTL-QSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIR 446 (491)
Q Consensus 373 v~~~i~N~~~~~-HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG~w~~H 446 (491)
++|+|+|.+... .-|+|.||.|.|++..+. + ..|...|++.|.+|+.+.|.++++. +|.|-+.
T Consensus 203 yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~-~----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 203 YRFRISNVGLQTSLNFEILGHQLKLIEVEGT-H----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred EEEEEEEcCCCceEEEEECCcEEEEEEeCCc-c----------CCCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 999999998654 899999999999999532 2 2345569999999999999999976 5776554
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.87 E-value=1.4e-07 Score=100.40 Aligned_cols=227 Identities=14% Similarity=0.101 Sum_probs=138.4
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+.. .|+|+++.|+++++++.|.... ...+|.+|....- -..||.+. .+-.|.||+.+...|++.+
T Consensus 47 ~~~~iNGq~P-GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~ 119 (552)
T PLN02354 47 QVILINGQFP-GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKD 119 (552)
T ss_pred EEEEECCCCc-CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCC
Confidence 4799999974 7999999999999999999753 4455555543322 23788542 3457999999999999854
Q ss_pred CCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCC
Q 011178 221 PPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYH 293 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~-~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 293 (491)
..|+||...+.. .|. ....|-|...+... .+.|- .+..+. ||.......+...+..
T Consensus 120 q~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~------------ 182 (552)
T PLN02354 120 QIGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPEDDYTVLIGDWYTKSHTALKKFLDS------------ 182 (552)
T ss_pred CCcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCceEEEEeeeeccCCHHHHHHHHhc------------
Confidence 579999987642 221 12233333332210 01110 000010 1111000000000000
Q ss_pred ccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEE
Q 011178 294 YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFA 373 (491)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 373 (491)
.. .........|||+.... + ......++++.|+++
T Consensus 183 ------------g~---~~~~~d~~liNG~~~~~----------------~--------------~~~~~~~~v~~Gk~y 217 (552)
T PLN02354 183 ------------GR---TLGRPDGVLINGKSGKG----------------D--------------GKDEPLFTMKPGKTY 217 (552)
T ss_pred ------------CC---CCCCCCeEEEeCCcCCC----------------C--------------CCCceEEEECCCCEE
Confidence 00 00001235566653210 0 001345789999999
Q ss_pred EEEEEcCCCCC-CceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cceeeeeec
Q 011178 374 EVVFENPEDTL-QSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGMWNIRSE 448 (491)
Q Consensus 374 ~~~i~N~~~~~-HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG~w~~HCH 448 (491)
+|+|+|.+... .-|||.||.|.|++..+ .+ ..|...|++.|.+|+...|.++++. +|.|-+.-.
T Consensus 218 RlRiINa~~~~~~~f~IdgH~~tVIa~DG-~~----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 218 RYRICNVGLKSSLNFRIQGHKMKLVEMEG-SH----------VLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred EEEEEecCCCceEEEEECCceEEEEEeCC-cc----------cCCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 99999998654 89999999999999953 22 2344569999999999999999974 788777655
No 29
>PLN02991 oxidoreductase
Probab=98.87 E-value=1.3e-07 Score=100.09 Aligned_cols=219 Identities=15% Similarity=0.172 Sum_probs=134.7
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeE-EEEecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKML-LVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~-via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+.. .|+|+++.|+++++++.|.... ...+|.+|.... --..||.+. .+-.|.||+.+...+++++
T Consensus 48 ~~~~vNG~~P-GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~ 120 (543)
T PLN02991 48 QGILINGKFP-GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKD 120 (543)
T ss_pred EEEEEcCCCC-CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCC
Confidence 4799999974 7999999999999999999753 556666665432 234799632 2457999999999999964
Q ss_pred CCcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCC-CCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCCc
Q 011178 221 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPG-GPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 294 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 294 (491)
.+|+||..++.... ......|-|...+... .+.|. .+..+. ||.......+...+
T Consensus 121 q~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~--------------- 181 (543)
T PLN02991 121 QIGSFYYFPSLGFH-KAAGGFGAIRISSRPL---IPVPFPAPADDYTVLIGDWYKTNHKDLRAQL--------------- 181 (543)
T ss_pred CCcceEEecCcchh-hhCCCeeeEEEeCCcc---cCcccccccceeEEEecceecCCHHHHHHHh---------------
Confidence 58999998875321 1112344343332210 11111 000000 11110000000000
Q ss_pred cccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEE
Q 011178 295 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 374 (491)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 374 (491)
.... ...-.....|||+.. ...++++.|++++
T Consensus 182 -----------~~~~-~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yR 213 (543)
T PLN02991 182 -----------DNGG-KLPLPDGILINGRGS------------------------------------GATLNIEPGKTYR 213 (543)
T ss_pred -----------hcCC-CCCCCCEEEEccCCC------------------------------------CceEEECCCCEEE
Confidence 0000 000011234555421 1236788999999
Q ss_pred EEEEcCCCCC-CceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cce-eee
Q 011178 375 VVFENPEDTL-QSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VGM-WNI 445 (491)
Q Consensus 375 ~~i~N~~~~~-HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG~-w~~ 445 (491)
|+|+|.+... +-|+|.||.|.|++.. |.+ ..|...|++.|.+|+...|.++++. +|. |+.
T Consensus 214 lRiINa~~~~~~~~~idgH~~tVIa~D-G~~----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 214 LRISNVGLQNSLNFRIQNHTMKLVEVE-GTH----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred EEEEeccCCeeEEEEECCCEEEEEEeC-Ccc----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 9999998654 8999999999999995 322 2355679999999999999999976 453 443
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.84 E-value=2.3e-07 Score=98.93 Aligned_cols=237 Identities=14% Similarity=0.127 Sum_probs=141.6
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeC-
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD- 219 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~- 219 (491)
..++|||+.. .|+|+++.|+++++++.|.-......+|.+|..+.- -..||.+. +.+-.|.||+.+...++++
T Consensus 28 ~~~~~NG~~P-GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~ 102 (538)
T TIGR03390 28 YSVVVNGTSP-GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEP 102 (538)
T ss_pred EEEEECCcCC-CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecC
Confidence 4799999974 799999999999999999865445566776664322 23688764 2334588999999999875
Q ss_pred CCCcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCCc
Q 011178 220 QPPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYHY 294 (491)
Q Consensus 220 ~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 294 (491)
..+|+||...+.. .+.....|.|...+... .+... ..+. ||.......+...+.
T Consensus 103 ~q~GT~WYHsH~~--~Q~~~l~G~lIV~~~~~---~~~~~--d~e~~l~l~Dw~~~~~~~~~~~~~-------------- 161 (538)
T TIGR03390 103 GDAGSYFYHSHVG--FQAVTAFGPLIVEDCEP---PPYKY--DDERILLVSDFFSATDEEIEQGLL-------------- 161 (538)
T ss_pred CCCeeeEEecCCc--hhhhcceeEEEEccCCc---cCCCc--cCcEEEEEeCCCCCCHHHHHhhhh--------------
Confidence 2579999987753 22222444444443210 01000 0010 111110000000000
Q ss_pred cccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEE
Q 011178 295 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 374 (491)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 374 (491)
..............|||+......... . + . ...| ....+.++.|++++
T Consensus 162 -----------~~~~~~~~~~d~~liNG~~~~~~~~~~-------~------~-----~--~~~~-~~~~~~v~~G~~yR 209 (538)
T TIGR03390 162 -----------STPFTWSGETEAVLLNGKSGNKSFYAQ-------I------N-----P--SGSC-MLPVIDVEPGKTYR 209 (538)
T ss_pred -----------ccCCccCCCCceEEECCcccccccccc-------c------c-----C--CCCC-cceEEEECCCCEEE
Confidence 000000001123567776421100000 0 0 0 0001 13468899999999
Q ss_pred EEEEcCCCCC-CceeccCCC-eEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCc--------ceee
Q 011178 375 VVFENPEDTL-QSWHIDGHN-FFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV--------GMWN 444 (491)
Q Consensus 375 ~~i~N~~~~~-HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnp--------G~w~ 444 (491)
|+|+|.+... .-|+|.||. |+|++..+. +..|...|++.|.+|+.+.|.++++.+ |.|-
T Consensus 210 lRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ 278 (538)
T TIGR03390 210 LRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYF 278 (538)
T ss_pred EEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEE
Confidence 9999998654 899999999 999999542 335677899999999999999999763 6665
Q ss_pred eee
Q 011178 445 IRS 447 (491)
Q Consensus 445 ~HC 447 (491)
+.-
T Consensus 279 ir~ 281 (538)
T TIGR03390 279 IQF 281 (538)
T ss_pred EEE
Confidence 543
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=98.83 E-value=2.7e-07 Score=97.92 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=130.9
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEE-EecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLV-EVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~vi-a~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+.. .|+|+++.|+++++++.|--.. ...+|.+|..+.-- ..||.+. .+-.|.||+++...+++++
T Consensus 46 ~~~~vNG~~P-GP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~ 118 (545)
T PLN02168 46 QVIVINDMFP-GPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD 118 (545)
T ss_pred EEEEECCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC
Confidence 4789999974 7999999999999999999864 55666666443211 2488642 3357999999999999964
Q ss_pred CCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCCCCCccccchhhhhhhhccCCCCCCCCCCCCCCCCcccccc
Q 011178 221 PPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPGGPTTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLINT 299 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 299 (491)
.+|+||...+.. .|. ....|.|...+... ...+.+ .+..+....+. +|.... . . ..
T Consensus 119 q~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~-~~~p~~-~~d~e~~l~l~-----Dw~~~~--~----~--------~~ 175 (545)
T PLN02168 119 QIGSYFYFPSLL--LQKAAGGYGAIRIYNPEL-VPVPFP-KPDEEYDILIG-----DWFYAD--H----T--------VM 175 (545)
T ss_pred CCceEEEecChh--hhhhCcceeEEEEcCCcc-cCcCcC-cccceeeEEEE-----ecCCCC--H----H--------HH
Confidence 589999987753 221 22334444433211 111111 01011110000 000000 0 0 00
Q ss_pred ceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEEEc
Q 011178 300 THTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVFEN 379 (491)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 379 (491)
.. .+.... .........|||+.- ....++++.|++++|+|.|
T Consensus 176 ~~--~~~~g~-~~~~~d~~liNG~~~-----------------------------------~~~~~~v~~G~~yRlRiiN 217 (545)
T PLN02168 176 RA--SLDNGH-SLPNPDGILFNGRGP-----------------------------------EETFFAFEPGKTYRLRISN 217 (545)
T ss_pred Hh--hhhcCC-CCCCCCEEEEeccCC-----------------------------------CcceEEeCCCCEEEEEEEe
Confidence 00 000000 000011244555421 0124678899999999999
Q ss_pred CCCC-CCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC
Q 011178 380 PEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN 439 (491)
Q Consensus 380 ~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn 439 (491)
.+.. .+-|+|.||+|.|++.. |. +..|...|++.|.+|+.+.+.+++++
T Consensus 218 a~~~~~~~~~IdgH~~tVIa~D-G~----------~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 218 VGLKTCLNFRIQDHDMLLVETE-GT----------YVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred ccCCceEEEEECCcEEEEEEEC-Ce----------ECCCceeeEEEEcCCceEEEEEEcCC
Confidence 9765 49999999999999985 32 22355679999999999999999964
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.75 E-value=5.4e-07 Score=96.15 Aligned_cols=231 Identities=15% Similarity=0.209 Sum_probs=137.6
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+.. .|+|+++.|+++++++.|-... ...+|.||..+.- --.||.+. .+-.|.||+.+...+++++
T Consensus 49 ~vi~vNGq~P-GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sftY~F~~~d 121 (596)
T PLN00044 49 EAIGINGQFP-GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWTYQFQVKD 121 (596)
T ss_pred EEEEEcCcCC-CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCCCCcEEEEEEeCC
Confidence 4799999974 7999999999999999999764 5677777765432 24788532 4468999999999999964
Q ss_pred CCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCCCCC-ccc-----cchhhhhhhhccCCCCCCCCCCCCCCCC
Q 011178 221 PPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPGGPT-TQI-----DWSLEQARSLRRNLTASGPRPNPQGSYH 293 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~-~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 293 (491)
.+|+||...+.. .+. ....|-|...+... .+.+.+. +. .+. ||.......+...+...
T Consensus 122 q~GT~WYHsH~~--~Q~~~Gl~GalII~~~~~-~~~P~~~-~~~~e~~i~l~DW~~~~~~~~~~~l~~g----------- 186 (596)
T PLN00044 122 QVGSFFYAPSTA--LHRAAGGYGAITINNRDV-IPIPFGF-PDGGDITLFIADWYARDHRALRRALDAG----------- 186 (596)
T ss_pred CCceeEeeccch--hhhhCcCeeEEEEcCccc-ccccccC-CcccceEEEecccccCCHHHHHHHHhcC-----------
Confidence 589999988753 221 22344343333211 1111110 10 010 11110000000000000
Q ss_pred ccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEE
Q 011178 294 YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFA 373 (491)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 373 (491)
. .........|||+.-.... ... . + ++ ....+++++.|+++
T Consensus 187 -------------~---~~~~~d~~lING~g~~~~n------------~~~----~---~-~~---~~~~~i~V~~Gk~y 227 (596)
T PLN00044 187 -------------D---LLGAPDGVLINAFGPYQYN------------DSL----V---P-PG---ITYERINVDPGKTY 227 (596)
T ss_pred -------------C---CCCCCCceEEcccCccccC------------Ccc----c---c-CC---CccceEEECCCCEE
Confidence 0 0000011234543210000 000 0 0 00 01236889999999
Q ss_pred EEEEEcCCCCC-CceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCc-c--eee
Q 011178 374 EVVFENPEDTL-QSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV-G--MWN 444 (491)
Q Consensus 374 ~~~i~N~~~~~-HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnp-G--~w~ 444 (491)
+|+|+|.+... --|+|-||+|.|++.. |. +..|..-|++.|.+|+.+.+.++++.+ | .||
T Consensus 228 RlRiINaa~~~~~~fsIdgH~mtVIa~D-G~----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 228 RFRVHNVGVATSLNFRIQGHNLLLVEAE-GS----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred EEEEEEccCCceEEEEECCCEEEEEEeC-Cc----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 99999997544 7899999999999995 43 234667899999999999999999875 5 466
No 33
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.72 E-value=1.1e-06 Score=93.96 Aligned_cols=250 Identities=15% Similarity=0.164 Sum_probs=141.4
Q ss_pred CceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeC
Q 011178 141 PDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 219 (491)
Q Consensus 141 ~~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~ 219 (491)
-..+++||+.. .|+|+++.|+++++++.|........+|.+|....- -..||.+- +.+..|.||+++...++++
T Consensus 20 ~~~~~~Ng~~p-GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~ 94 (541)
T TIGR03388 20 KLVIGINGQFP-GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVD 94 (541)
T ss_pred eeEEEECCcCC-CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcC
Confidence 34799999974 799999999999999999975556788888874311 12577532 3456789999999999998
Q ss_pred CCCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCC
Q 011178 220 QPPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYH 293 (491)
Q Consensus 220 ~~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 293 (491)
+ +|+||...+.. .+. ....+.|.+.+... ...+.. ...+. ||...........+.. . +
T Consensus 95 ~-~Gt~wyH~H~~--~q~~~Gl~G~liV~~~~~-~~~p~~--~d~e~~l~l~Dw~~~~~~~~~~~~~~---~--~----- 158 (541)
T TIGR03388 95 R-PGTYFYHGHYG--MQRSAGLYGSLIVDVPDG-EKEPFH--YDGEFNLLLSDWWHKSIHEQEVGLSS---K--P----- 158 (541)
T ss_pred C-CEEEEEEecch--HHhhccceEEEEEecCCC-CCCCcc--ccceEEEEeecccCCCHHHHHhhccc---C--C-----
Confidence 4 79999988753 221 12344444443211 011111 00010 1111000000000000 0 0
Q ss_pred ccccccceEEEEeccccCcCCeEeEEEcCeeeeC-CCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcE
Q 011178 294 YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIP-ADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGF 372 (491)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~-~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 372 (491)
+. .........|||+.... ...... ... ..+.+. ..........+++++.|++
T Consensus 159 -----------~~----~~~~~d~~liNG~g~~~~~~~~~~-~~~--~~~~~~--------~~~~~~~~~~~~~v~~g~~ 212 (541)
T TIGR03388 159 -----------MR----WIGEPQSLLINGRGQFNCSLAAKF-SST--NLPQCN--------LKGNEQCAPQILHVEPGKT 212 (541)
T ss_pred -----------Cc----CCCCCcceEECCCCCCCCcccccc-Ccc--ccchhh--------ccCCCCCCceEEEECCCCE
Confidence 00 00001124566652110 000000 000 000000 0000000123578999999
Q ss_pred EEEEEEcCCC-CCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeeeec
Q 011178 373 AEVVFENPED-TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIRSE 448 (491)
Q Consensus 373 v~~~i~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG-~w~~HCH 448 (491)
++|+|+|.+. ..+-|+|.||+|+|++..+. +..|..-|.+.|.+|+.+.|.++++. +| .|-++--
T Consensus 213 ~RlRliNa~~~~~~~~~id~h~~~VIa~DG~-----------~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 213 YRLRIASTTALAALNFAIEGHKLTVVEADGN-----------YVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred EEEEEEcccccceEEEEECCCEEEEEEeCCE-----------ecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 9999999875 45999999999999999642 22466779999999999999999964 54 5655543
No 34
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.68 E-value=6.2e-08 Score=81.77 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=67.8
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cc
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG 441 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG 441 (491)
.++.++.|+.|++.+.|....++.+|.||...---...+|... .. .-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~-------~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPG-------VT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTT-------TS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCccc-------cc-------ceeEEeecceeeeEeeecccc
Confidence 4578899999999999998888999999975311000111100 00 123778999999999988 99
Q ss_pred eeeeeecchhhhhcceEEEEEEecC
Q 011178 442 MWNIRSENWARQYLGQQFYLRVYSS 466 (491)
Q Consensus 442 ~w~~HCHil~H~d~GMm~~~~V~~~ 466 (491)
.|.||||...+..+||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988878999999988754
No 35
>PRK10883 FtsI repressor; Provisional
Probab=98.64 E-value=1.5e-06 Score=91.18 Aligned_cols=224 Identities=15% Similarity=0.158 Sum_probs=129.4
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQP 221 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~ 221 (491)
..+.+||+.. .|+|++++|+++++++.|.-.. ...+|.+|....- ..||..- ..|.||++++..+..++.
T Consensus 66 ~v~~~ng~~p-GPtir~~~Gd~v~v~v~N~L~~-~ttiHwHGl~~~~-~~~~g~~-------~~I~PG~~~~y~f~~~~~ 135 (471)
T PRK10883 66 SVWGINGRYL-GPTIRVWKGDDVKLIYSNRLTE-PVSMTVSGLQVPG-PLMGGPA-------RMMSPNADWAPVLPIRQN 135 (471)
T ss_pred eEEEECCccc-CCeEEEECCCEEEEEEEeCCCC-CCceeECCccCCC-CCCCCcc-------ccCCCCCeEEEEEecCCC
Confidence 4689999864 7999999999999999998754 4566776654321 1133321 238899999999988877
Q ss_pred CcceEEEEEeec--cCCCc-ceEEEEEecCCCCCCCCCCCCCCC-ccccchhhhhhhhccCCCCCCCCCCCCCCCCcccc
Q 011178 222 PQGYYIVISTRF--TSQVL-SATSVLHYSNSAGSVSGPPPGGPT-TQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLI 297 (491)
Q Consensus 222 ~g~~~i~~~~~~--~~~~~-~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 297 (491)
+|+||...+... ..+.. .-.|.+...... ....++|..=. .+....+. ++.+... +...+..
T Consensus 136 aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~-~~~~~~p~~~~~~d~~l~l~-----D~~~~~~-------g~~~~~~- 201 (471)
T PRK10883 136 AATCWYHANTPNRMAQHVYNGLAGMWLVEDEV-SKSLPIPNHYGVDDFPVIIQ-----DKRLDNF-------GTPEYNE- 201 (471)
T ss_pred ceeeEEccCCCCchhhhHhcCCeEEEEEeCCc-ccccCCcccCCCcceeEEee-----eeeeccC-------CCccccc-
Confidence 899999877431 11211 122333333221 01111111000 00000000 0000000 0000000
Q ss_pred ccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEE
Q 011178 298 NTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVF 377 (491)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i 377 (491)
. .. . .. ......|||+.+ ..++++.+ +++|+|
T Consensus 202 ----~---~~-~-g~-~gd~~lvNG~~~-------------------------------------p~~~v~~~-~~RlRl 233 (471)
T PRK10883 202 ----P---GS-G-GF-VGDTLLVNGVQS-------------------------------------PYVEVSRG-WVRLRL 233 (471)
T ss_pred ----c---cc-C-Cc-cCCeeEECCccC-------------------------------------CeEEecCC-EEEEEE
Confidence 0 00 0 00 011244555432 12456654 789999
Q ss_pred EcCCCC-CCceec-cCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeee
Q 011178 378 ENPEDT-LQSWHI-DGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRS 447 (491)
Q Consensus 378 ~N~~~~-~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HC 447 (491)
.|.+.. ..-|+| +||.|+|++..+|.. ..|...|.+.+.||+.+.|.++++..+.+.+++
T Consensus 234 iNas~~~~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~ 295 (471)
T PRK10883 234 LNASNARRYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVDMSNGDEVSITA 295 (471)
T ss_pred EEccCCceEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEECCCCceEEEEC
Confidence 999864 378888 899999999975532 345567999999999999999997777888876
No 36
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.61 E-value=2.1e-08 Score=87.50 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred EEeeeEEEEEEecCCCCCeeeecccCCCCCCCCCCC-------------CC--CCCCCCCCCeEEEEEEeCCCccceeEe
Q 011178 15 ITHLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGV-------------YG--TNCPIPPGKNFTYVLQVKDQIGSYFYF 79 (491)
Q Consensus 15 ~v~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~-------------~~--~q~~i~PG~~~~Y~f~~~~~~Gt~wYH 79 (491)
+.++.+++.+.|....++.+|+||.....-...++. +. --..|.||+..+.+|++ +.+|.|.||
T Consensus 39 ~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~G~w~~H 117 (138)
T PF07731_consen 39 KNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNPGPWLFH 117 (138)
T ss_dssp ETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TSTEEEEEE
T ss_pred eCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecceEEEEE
Confidence 345788999999999999999999965311111111 11 12448999999999999 599999999
Q ss_pred CCccccccCCceeEEEEec
Q 011178 80 PSLAFHKAAGGYGGIKIAS 98 (491)
Q Consensus 80 ~H~~~q~~~Gl~G~liV~~ 98 (491)
||...+...||.+.+.|.+
T Consensus 118 CHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 118 CHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ESSHHHHHTT-EEEEEECH
T ss_pred EchHHHHhCCCeEEEEEcC
Confidence 9999999999999999986
No 37
>PLN02191 L-ascorbate oxidase
Probab=98.60 E-value=2.8e-06 Score=91.19 Aligned_cols=250 Identities=13% Similarity=0.146 Sum_probs=138.8
Q ss_pred CceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEE-EEecCccCCCCccCeEEEcCCceEEEEEEeC
Q 011178 141 PDGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLL-VEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 219 (491)
Q Consensus 141 ~~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~v-ia~DG~~~~p~~~~~l~l~pGeR~dv~v~~~ 219 (491)
...++|||+.. .|+|+++.|+++++++.|.-......+|.+|....- -..||.+- +..-.|.||+.+...++++
T Consensus 42 ~~v~~vNg~~p-GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~ 116 (574)
T PLN02191 42 GAVMTVNGQFP-GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE 116 (574)
T ss_pred eeEEEECCcCC-CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC
Confidence 35899999975 799999999999999999865445677777764321 12477543 2445699999999999998
Q ss_pred CCCcceEEEEEeeccCCC-cceEEEEEecCCCCCCCCCCCCCCCccc-----cchhhhhhhhccCCCCCCCCCCCCCCCC
Q 011178 220 QPPQGYYIVISTRFTSQV-LSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLEQARSLRRNLTASGPRPNPQGSYH 293 (491)
Q Consensus 220 ~~~g~~~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 293 (491)
.+|+||...+.. .+. ....|.|.......+. .+.. ...+. ||...........+... +.
T Consensus 117 -~~GT~wYHsH~~--~q~~~Gl~G~liV~~~~~~~-~~~~--~d~e~~l~l~Dw~~~~~~~~~~~~~~~---~~------ 181 (574)
T PLN02191 117 -KPGTHFYHGHYG--MQRSAGLYGSLIVDVAKGPK-ERLR--YDGEFNLLLSDWWHESIPSQELGLSSK---PM------ 181 (574)
T ss_pred -CCeEEEEeeCcH--HHHhCCCEEEEEEccCCCCC-CCCC--CCeeEEEeeeccccCChHHHHHhhccC---CC------
Confidence 479999988753 221 2234444443221111 0010 00111 11110000000000000 00
Q ss_pred ccccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEE
Q 011178 294 YGLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFA 373 (491)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 373 (491)
+ .........|||+.-..-........ ...+..+ . ...++ .+ ...+++++.|+++
T Consensus 182 -------~---------~~~~~d~~liNG~g~~~~~~~~~~~~--~~~~~~~-~----~~~n~-~~-~p~~~~v~~G~~y 236 (574)
T PLN02191 182 -------R---------WIGEAQSILINGRGQFNCSLAAQFSN--GTELPMC-T----FKEGD-QC-APQTLRVEPNKTY 236 (574)
T ss_pred -------C---------cCCCCCceEECCCCCCCCcccccccC--Ccccccc-e----eccCC-CC-CceEEEEcCCCEE
Confidence 0 00001123455542110000000000 0000000 0 00000 00 1236889999999
Q ss_pred EEEEEcCCCC-CCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeee
Q 011178 374 EVVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIR 446 (491)
Q Consensus 374 ~~~i~N~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG-~w~~H 446 (491)
+|+|+|.+.. .+-|+|.||+|.|++.. |. +..|..-|++.|.+|+...|.++++. +| .|-++
T Consensus 237 RlRiINa~~~~~~~~~idgH~~tVIa~D-G~----------~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ir 301 (574)
T PLN02191 237 RIRLASTTALASLNLAVQGHKLVVVEAD-GN----------YITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYIS 301 (574)
T ss_pred EEEEEecCCceeEEEEECCCeEEEEEcC-Ce----------eccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEE
Confidence 9999999754 48999999999999996 32 23467789999999999999999976 44 44433
No 38
>PRK10965 multicopper oxidase; Provisional
Probab=98.59 E-value=2.4e-06 Score=90.51 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=131.9
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQP 221 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~ 221 (491)
..+.+||+.. .|+|++++|+++++++.|--.. ...+|.+|.... -+.||.+ ...|.||++++..+++++.
T Consensus 66 ~~~~yNg~~P-GPtIr~~~Gd~v~v~~~N~L~~-~ttiHwHGl~~~-~~~DG~p-------q~~I~PG~s~~Y~f~~~q~ 135 (523)
T PRK10965 66 ATWGYNGNLL-GPAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVP-GEVDGGP-------QGIIAPGGKRTVTFTVDQP 135 (523)
T ss_pred EEEEECCCCC-CceEEEECCCEEEEEEEECCCC-CccEEcccccCC-CccCCCC-------CCCCCCCCEEEEEeccCCC
Confidence 4799999864 7999999999999999998654 566777776533 2478864 2457899999999999877
Q ss_pred CcceEEEEEeec--cCCC-cceEEEEEecCCCCCCCCCCCCCC-CccccchhhhhhhhccCCCCCCCCCCCCCCCCcccc
Q 011178 222 PQGYYIVISTRF--TSQV-LSATSVLHYSNSAGSVSGPPPGGP-TTQIDWSLEQARSLRRNLTASGPRPNPQGSYHYGLI 297 (491)
Q Consensus 222 ~g~~~i~~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 297 (491)
+|+||...+... ..+. ....+.+.+..... ....+|..- ..++...+. ++.+.. .+...+..
T Consensus 136 aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~-~~~~lp~~~~~~d~~lvlq-----D~~~~~-------~g~~~~~~- 201 (523)
T PRK10965 136 AATCWFHPHQHGKTGRQVAMGLAGLVLIEDDES-LKLGLPKQWGVDDIPVILQ-----DKRFSA-------DGQIDYQL- 201 (523)
T ss_pred CceEEEecCCCCCcHHHHhCcCeEEEEEcCccc-cccCCcccCCCceeeEEEE-----eeeeCC-------CCceeccc-
Confidence 899999877521 1221 12334444443221 111122100 001100000 000000 00000000
Q ss_pred ccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEEEEE
Q 011178 298 NTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAEVVF 377 (491)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i 377 (491)
.. ... ..... .....|||+.+ |. +.++ +++++|+|
T Consensus 202 ----~~-~~~-~~g~~-gd~~lVNG~~~-----p~--------------------------------~~v~-~~~~RlRl 236 (523)
T PRK10965 202 ----DV-MTA-AVGWF-GDTLLTNGAIY-----PQ--------------------------------HAAP-RGWLRLRL 236 (523)
T ss_pred ----cc-ccc-ccCcc-CCeEEECCccc-----ce--------------------------------eecC-CCEEEEEE
Confidence 00 000 00000 12355666542 11 2233 56899999
Q ss_pred EcCCCC-CCceec-cCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceeeeee
Q 011178 378 ENPEDT-LQSWHI-DGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWNIRS 447 (491)
Q Consensus 378 ~N~~~~-~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~~HC 447 (491)
.|.+.. ..-+.+ .||.|+|++..++. +..|...|.+.|.||+.+.|.+++...|.+.+..
T Consensus 237 iNas~~r~~~l~~~dg~~~~vIa~DG~~----------l~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~ 298 (523)
T PRK10965 237 LNGCNARSLNLATSDGRPLYVIASDGGL----------LAEPVKVSELPILMGERFEVLVDTSDGKAFDLVT 298 (523)
T ss_pred EeccCCceEEEEEcCCceEEEEEeCCCc----------ccCccEeCeEEECccceEEEEEEcCCCceEEEEE
Confidence 999743 233444 78999999996542 3346677999999999999999998778766654
No 39
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=3.7e-05 Score=81.43 Aligned_cols=228 Identities=18% Similarity=0.248 Sum_probs=139.6
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCcee-EEEEecCccCCCCccCeEEEcCCceEEEEEEeCC
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKM-LLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~-~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
..++|||+-. .|+|.++.|+++.++++|-.. ..+.++-+|... .---.||.++ .+=.|.|||.|--.+++++
T Consensus 48 ~vi~iNG~fP-GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 48 QVITINGQFP-GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred eeEeecCCCC-CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCC
Confidence 4699999975 799999999999999999955 566777777532 2233488443 5556899999999999996
Q ss_pred CCcceEEEEEeeccCCCcceEEEEEecCCCCCCCCCCCCCCCccc-----cchhh-hhhhhccCCCCCCCCCCCCCCCCc
Q 011178 221 PPQGYYIVISTRFTSQVLSATSVLHYSNSAGSVSGPPPGGPTTQI-----DWSLE-QARSLRRNLTASGPRPNPQGSYHY 294 (491)
Q Consensus 221 ~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~ 294 (491)
..|+||..++..+-.. ....|-|....... .+-+.+ .|..+. +|-.+ ..+.+...+......|.
T Consensus 121 q~GT~~yh~h~~~~Ra-~G~~G~liI~~~~~-~p~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~------- 190 (563)
T KOG1263|consen 121 QIGTLWYHSHVSWQRA-TGVFGALIINPRPG-LPVPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPN------- 190 (563)
T ss_pred cceeEEEeeccccccc-cCceeEEEEcCCcc-CCCCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCCC-------
Confidence 6899998887653211 12444444432221 001111 111111 11110 00111100000000000
Q ss_pred cccccceEEEEeccccCcCCeEeEEEcCeeeeCCCCccccccccCCCCccccCCCCCCCCCCCcceeeeEEeecCCcEEE
Q 011178 295 GLINTTHTIRLQNTAPTINGKQRYAVNSVSFIPADTPLKLADYFKIPGVFSVGSIPDNPTGGGAYLQTSVMAADFRGFAE 374 (491)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 374 (491)
..-...|||++ +..+.|...+++..|+++.
T Consensus 191 -------------------~~D~~~iNg~~-------------------------------g~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 191 -------------------PSDGVLINGRS-------------------------------GFLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred -------------------CCCceEECCCC-------------------------------CcccCceeEEEEcCCCEEE
Confidence 00113344443 1222346678899999999
Q ss_pred EEEEcCCC--CCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-cc-eeeeeec
Q 011178 375 VVFENPED--TLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN-VG-MWNIRSE 448 (491)
Q Consensus 375 ~~i~N~~~--~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn-pG-~w~~HCH 448 (491)
|+|.|.+- ..+ |.|-+|.+.||+.. |. ...|.--|++.|.+|+...+...||. ++ -|+-=|=
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~D-g~----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVD-GA----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEec-ce----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 99999874 335 99999999999985 43 23355669999999999999999975 45 3555444
No 40
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=7.2e-06 Score=86.06 Aligned_cols=222 Identities=14% Similarity=0.013 Sum_probs=135.9
Q ss_pred CCcccCCCCeEEEe-----------eeEEEEEEecC-CCCCeeeecccCCCCCCCCCCCC----C-CCCCCCCCCeEEEE
Q 011178 4 MNHFSSLGCSLITH-----------LYTHLVVLNFI-YMAPLITLNGVQQRRNSWQDGVY----G-TNCPIPPGKNFTYV 66 (491)
Q Consensus 4 ~~~~~~~G~~l~v~-----------d~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~----~-~q~~i~PG~~~~Y~ 66 (491)
......+||++.|+ ..+++|+.|.- .....+++.|..... -..||.+ . .+..+.|||.++..
T Consensus 182 ~~~~~~~g~~~~vnG~~~p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~ 260 (451)
T COG2132 182 PAMGGFPGDTLLVNGAILPFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVL 260 (451)
T ss_pred ccccCCCCCeEEECCCccceeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEE
Confidence 34467888886653 24899999997 455666666544321 1256654 2 45668999999999
Q ss_pred EEeCCCccceeEeCCccccccCCceeEEEEecCCCCCC-CC------CCCC---CcceEEeeecccCCHHHHHHHHhcCC
Q 011178 67 LQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRPLIPV-PF------DPPA---GDFTILAGDWYKKNHTDLKAILDSGS 136 (491)
Q Consensus 67 f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~-~~------~~~~---~e~~l~l~d~~~~~~~~~~~~~~~~~ 136 (491)
.+.. ..|++-|.|.. .+..+-+.+..-......... .+ ..++ ......+.....+......... .-.
T Consensus 261 v~~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 337 (451)
T COG2132 261 VDMN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDF-HLI 337 (451)
T ss_pred EEcC-CCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccc-hhh
Confidence 8885 47888888876 222232333322222110000 00 0011 1111111111111110000000 000
Q ss_pred CCCCCceEEEcCcCCC--cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccC---CCCccCeEEEcCCce
Q 011178 137 DLPFPDGLVINGRGSN--ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT---LQNTYDSLDIHLGQS 211 (491)
Q Consensus 137 ~~~~~~~~~vNG~~~~--~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~---~p~~~~~l~l~pGeR 211 (491)
.......+.+||+.+. ...+.++.|+++||+|.|-+. ..+.||++|+.|.|++.| ... .+...|++.+.+|+|
T Consensus 338 ~~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~ 415 (451)
T COG2132 338 GGIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGER 415 (451)
T ss_pred cccccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeE
Confidence 0112345888998864 467899999999999999998 689999999999999999 322 335569999999999
Q ss_pred EEEEEEeCCCCcceEEEEEee
Q 011178 212 YSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 212 ~dv~v~~~~~~g~~~i~~~~~ 232 (491)
..+.++++ .+|.|.+.++..
T Consensus 416 ~~v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 416 LLVRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEEEeCC-CCCceEEeccch
Confidence 99999999 678888877654
No 41
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.19 E-value=5.5e-06 Score=74.15 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=76.4
Q ss_pred eeEEeecCCcEEEEEEEcCCCC-CCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccC-
Q 011178 362 TSVMAADFRGFAEVVFENPEDT-LQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDN- 439 (491)
Q Consensus 362 ~~~~~~~~g~~v~~~i~N~~~~-~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adn- 439 (491)
..++.++.|++++|+|.|.+.. .+.|++.||+|+|++.. |. ...|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~D-G~----------~v~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAAD-GV----------PVEPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEET-TE----------EEEEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeec-cc----------cccccccceEEeeCCeEEEEEEEeCCC
Confidence 3467899999999999998865 59999999999999995 32 22277889999999999999999987
Q ss_pred cceeeeee----cchhhhhcceEEEEEEe
Q 011178 440 VGMWNIRS----ENWARQYLGQQFYLRVY 464 (491)
Q Consensus 440 pG~w~~HC----Hil~H~d~GMm~~~~V~ 464 (491)
+|.|.++| +...+...|+...+.+.
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 55677888888777654
No 42
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=98.17 E-value=3.3e-06 Score=71.82 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=41.8
Q ss_pred CeEEE--eeeEEEEEEecCCCCC--eeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCcc
Q 011178 12 CSLIT--HLYTHLVVLNFIYMAP--LITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLA 83 (491)
Q Consensus 12 ~~l~v--~d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 83 (491)
+.|+| ||+|+++++|.-+.++ .+++||+ +..|+||++.+|+|++ +++|+|||||-.+
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 44444 4777888999876543 3443332 2348999999999999 6999999999766
No 43
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.08 E-value=1.9e-05 Score=69.30 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=57.6
Q ss_pred EEeecCCcEEEEEEEcCCC-CCCceeccCCCe--EEEeeccCCCCCCCCCCcccCCCCceeeEEeCC---C--CEEEEEE
Q 011178 364 VMAADFRGFAEVVFENPED-TLQSWHIDGHNF--FAVGMDGGEWTPASRLTYNLRDTISRCTVQVYP---K--SWTAVYV 435 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F--~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p---~--~~~~irf 435 (491)
.+.++.|+.|++.+.|.+. ..|.|-||.+.- ......+|. +..-..-.+++ + ++..+.|
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEEE
Confidence 4778999999999999865 557666653221 110000110 11111112222 2 2468899
Q ss_pred EccCcceeeeeecchhhhhcceEEEEEE
Q 011178 436 PLDNVGMWNIRSENWARQYLGQQFYLRV 463 (491)
Q Consensus 436 ~adnpG~w~~HCHil~H~d~GMm~~~~V 463 (491)
+++.+|.+.||||+..|...||-..+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 9999999999999999999999999987
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.92 E-value=4.1e-05 Score=62.64 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=45.0
Q ss_pred EEEecCCCCCeeeecccCCCC-CCCCCCCCC-CCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEe
Q 011178 23 VVLNFIYMAPLITLNGVQQRR-NSWQDGVYG-TNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 97 (491)
Q Consensus 23 ~~~N~l~~~~siH~HG~~~~~-~~~~DG~~~-~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 97 (491)
+++|.-..++++.++...... .....+... +...+.||+++++.|+. +|+|.|+|- .+...||.|.|+|+
T Consensus 28 ~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 28 EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--CccccCCEEEEEEC
Confidence 466876677777766432110 000011111 22347899999998864 999999997 55677999999985
No 45
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.77 E-value=0.00012 Score=59.89 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=58.7
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
..+.++.|++|+|+ |.+...|-+.++...+..-.. ........+++.+.||+...+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-------------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-------------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 35788999999887 666677888776432211100 0001123477888999999887776 999
Q ss_pred eeeeecchhhhhcceEEEEEE
Q 011178 443 WNIRSENWARQYLGQQFYLRV 463 (491)
Q Consensus 443 w~~HCHil~H~d~GMm~~~~V 463 (491)
|.|||- .|...||...+.|
T Consensus 80 y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEcC--CccccCCEEEEEE
Confidence 999998 6999999999987
No 46
>PRK02710 plastocyanin; Provisional
Probab=97.57 E-value=0.00027 Score=59.81 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=45.8
Q ss_pred eeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEE
Q 011178 17 HLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKI 96 (491)
Q Consensus 17 ~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV 96 (491)
||+ |+++|.-..++++.+.|.. +...+...+.||++++|.|+. +|+|-|+|= .+...||.|.|+|
T Consensus 54 Gd~--V~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 54 GDT--VKWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred CCE--EEEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccCCcEEEEEE
Confidence 454 3467876677887765431 111122337899999998874 899999997 3455799999998
Q ss_pred e
Q 011178 97 A 97 (491)
Q Consensus 97 ~ 97 (491)
+
T Consensus 119 ~ 119 (119)
T PRK02710 119 E 119 (119)
T ss_pred C
Confidence 4
No 47
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.49 E-value=0.00049 Score=58.71 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=50.0
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+.|+|.+.|.+..+|.+-++++. -...++||+..+|+|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 478999999999999999888887776541 13457789999999999999999
Q ss_pred eeeecc
Q 011178 444 NIRSEN 449 (491)
Q Consensus 444 ~~HCHi 449 (491)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999988
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.48 E-value=0.00055 Score=53.96 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=40.5
Q ss_pred EEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEe
Q 011178 24 VLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 97 (491)
Q Consensus 24 ~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 97 (491)
++|.-..++++++..-.-.. .+ .....+.||++|++.| +++|+|-|||=.+. +|.|-++|+
T Consensus 23 ~~N~d~~~Hnv~~~~g~~~~---~~---~~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 23 WINREAMPHNVHFVAGVLGE---AA---LKGPMMKKEQAYSLTF---TEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEECCCCCccEEecCCCCcc---cc---ccccccCCCCEEEEEC---CCCEEEEEEcCCCC----CCeEEEEEC
Confidence 67886678888875432100 00 0112257888888777 36999999997663 599999985
No 49
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.37 E-value=0.00046 Score=56.42 Aligned_cols=37 Identities=27% Similarity=0.590 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEe
Q 011178 56 PIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 97 (491)
Q Consensus 56 ~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 97 (491)
.+.||+++++.|+ ++|+|.|+|- - +...||.|.|+|+
T Consensus 63 ~~~~G~~~~~tF~---~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 63 LLAPGETYSVTFT---KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EBSTTEEEEEEEE---SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred ecCCCCEEEEEeC---CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 3789999999998 6999999997 3 6778999999996
No 50
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.25 E-value=0.0004 Score=57.29 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=37.5
Q ss_pred eeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEE
Q 011178 17 HLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKI 96 (491)
Q Consensus 17 ~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV 96 (491)
|+.|+|+++|.-...+.+..-++.. ...|.||++.+++|+. .++|+|=|+|-.+. . |.|-|||
T Consensus 42 G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 42 GQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp TCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-TB-----
T ss_pred CCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-ceecccC
Confidence 4678899999977765555555321 1348999999999987 68999999999765 3 7787776
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.19 E-value=0.00074 Score=71.64 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=49.7
Q ss_pred EeeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCcc-ccccCCceeEE
Q 011178 16 THLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLA-FHKAAGGYGGI 94 (491)
Q Consensus 16 v~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~Gl~G~l 94 (491)
.||.|.++++|.-...-.+ ||+.+.+. |+ ..-+.||++-+..|++ +++|+|||||..- .....+|.|-|
T Consensus 561 ~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~~dv~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~~M~G~~ 630 (635)
T PRK02888 561 QGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---NMEVAPQATASVTFTA-DKPGVYWYYCTWFCHALHMEMRGRM 630 (635)
T ss_pred CCCEEEEEEEeCCcccccc--cceeeccc----Cc---cEEEcCCceEEEEEEc-CCCEEEEEECCcccccCcccceEEE
Confidence 3567788899942211122 66654321 11 1237899999999999 6999999999852 12224899999
Q ss_pred EEecC
Q 011178 95 KIASR 99 (491)
Q Consensus 95 iV~~~ 99 (491)
+|+++
T Consensus 631 iVep~ 635 (635)
T PRK02888 631 LVEPK 635 (635)
T ss_pred EEEeC
Confidence 99863
No 52
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.98 E-value=0.0021 Score=53.04 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=44.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
..++++.|+.+.+++.|.+...|-|.+-+. +.+ ..+++|+..++.|.++.||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~~~-~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------GIS-KVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------TEE-EEE-TT-EEEEEEEE-S-EE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------ceE-EEECCCCEEEEEEcCCCCEE
Confidence 347889999999999999877666655431 123 77889999999999999999
Q ss_pred eeeeecchhhhhcceEEEE
Q 011178 443 WNIRSENWARQYLGQQFYL 461 (491)
Q Consensus 443 w~~HCHil~H~d~GMm~~~ 461 (491)
|-|+|-+ |.. |-..+
T Consensus 88 y~~~C~~--~~~--m~G~l 102 (104)
T PF13473_consen 88 YEFYCTM--HPN--MKGTL 102 (104)
T ss_dssp EEEB-SS--S-T--TB---
T ss_pred EEEEcCC--CCc--ceecc
Confidence 9999997 554 44444
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=96.89 E-value=0.0042 Score=52.68 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=48.0
Q ss_pred cccCCCCeEEEeeeEEEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCcccc
Q 011178 6 HFSSLGCSLITHLYTHLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFH 85 (491)
Q Consensus 6 ~~~~~G~~l~v~d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q 85 (491)
+.+.+||||+ +.|.-...++++.=+.. .+ +|.- .....+|++|++.|+ .+|+|-|.|-.|
T Consensus 56 v~v~pGDTVt--------w~~~d~~~Hnv~~~~~~---~~--~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH-- 115 (128)
T COG3794 56 VTVKPGDTVT--------WVNTDSVGHNVTAVGGM---DP--EGSG--TLKAGINESFTHTFE---TPGEYTYYCTPH-- 115 (128)
T ss_pred EEECCCCEEE--------EEECCCCCceEEEeCCC---Cc--cccc--ccccCCCcceEEEec---ccceEEEEeccC--
Confidence 3456777774 78886668888766553 11 2221 122334567766664 599999998654
Q ss_pred ccCCceeEEEEec
Q 011178 86 KAAGGYGGIKIAS 98 (491)
Q Consensus 86 ~~~Gl~G~liV~~ 98 (491)
...||.|.|+|++
T Consensus 116 ~~~gM~G~IvV~~ 128 (128)
T COG3794 116 PGMGMKGKIVVGE 128 (128)
T ss_pred CCCCcEEEEEeCC
Confidence 5579999999974
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.73 E-value=0.0087 Score=50.18 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEecCC
Q 011178 58 PPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 100 (491)
Q Consensus 58 ~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 100 (491)
.+|+++++.| +++|+|=|+|= .+...||.|.|+|.+++
T Consensus 53 ~~g~~~~~tF---~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 53 KINEEYTVTV---TEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCCEEEEEe---CCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 3566666666 36999999997 34668999999998853
No 55
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.72 E-value=0.0099 Score=48.47 Aligned_cols=82 Identities=10% Similarity=-0.041 Sum_probs=55.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCC-CCCCcccCCCCceeeEEeCCCCEEEEEEEccCcc
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPA-SRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVG 441 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG 441 (491)
..+.++.|++|.|+.. +...|.+.+ .. +.+... ...... ..-.+..+.+|+...+.|. .+|
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~-------~~---~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVF-------VA---DGMPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEE-------ET---TSSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEE-------ec---ccccccccccccC----ccccceecCCCCEEEEEeC--CCe
Confidence 3478899999988766 455677655 11 111100 000000 1116677888998888877 899
Q ss_pred eeeeeecchhhhhcceEEEEEEe
Q 011178 442 MWNIRSENWARQYLGQQFYLRVY 464 (491)
Q Consensus 442 ~w~~HCHil~H~d~GMm~~~~V~ 464 (491)
.|.|+|- - |...||-..+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999873
No 56
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.47 E-value=0.011 Score=62.94 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=56.3
Q ss_pred EEeecCCcEEEEEEEcCC---CCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCc
Q 011178 364 VMAADFRGFAEVVFENPE---DTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNV 440 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnp 440 (491)
.+.++.|+.|.+++.|.+ +..|-|-|-++. --+.+.||....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------------------I~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------------------VNMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccC---------------------------ccEEEcCCceEEEEEEcCCC
Confidence 467899999999999974 355776663331 11356689999999999999
Q ss_pred ceeeeeecchhhh-hcceEEEEEEe
Q 011178 441 GMWNIRSENWARQ-YLGQQFYLRVY 464 (491)
Q Consensus 441 G~w~~HCHil~H~-d~GMm~~~~V~ 464 (491)
|+|.+||...-|. |.+|...+.|.
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEE
Confidence 9999999985443 45888888775
No 57
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.35 E-value=0.021 Score=47.73 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEe
Q 011178 57 IPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIA 97 (491)
Q Consensus 57 i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 97 (491)
..||++|+|.|. ++|+|=|+|=.| ...||.|.|+|+
T Consensus 80 ~~~G~t~s~Tf~---~~G~Y~Y~C~pH--~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTFE---EPGIYLYVCVPH--EALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEec---CCcEEEEEccCC--CCCCCEEEEEEC
Confidence 578999999994 699999999754 456899999985
No 58
>PRK02710 plastocyanin; Provisional
Probab=96.31 E-value=0.018 Score=48.62 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=50.6
Q ss_pred EeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceee
Q 011178 365 MAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWN 444 (491)
Q Consensus 365 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~ 444 (491)
++++.|++|+|+ |.+..+|.+.+.+.. .+. ..| ..+.+|+...+.|.. ||.+.
T Consensus 49 i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~~-------------~~~-~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLAPHNAVFDGAK---------ELS-------------HKD-LAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEEE--ECCCCCceEEecCCc---------ccc-------------ccc-cccCCCCEEEEEecC--CEEEE
Confidence 678899998875 666678887654221 000 112 346788888877766 99999
Q ss_pred eeecchhhhhcceEEEEEE
Q 011178 445 IRSENWARQYLGQQFYLRV 463 (491)
Q Consensus 445 ~HCHil~H~d~GMm~~~~V 463 (491)
|+|= .|...||-..+.|
T Consensus 102 y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 102 YYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEcC--CCccCCcEEEEEE
Confidence 9997 5999999999987
No 59
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.99 E-value=0.036 Score=50.30 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=59.2
Q ss_pred CeEEE--eeeEEEEEEecCCCCCeee--ecccCCC--CCCCCCCCC----C------CCCCCCCCCeEEEEEEeCCCccc
Q 011178 12 CSLIT--HLYTHLVVLNFIYMAPLIT--LNGVQQR--RNSWQDGVY----G------TNCPIPPGKNFTYVLQVKDQIGS 75 (491)
Q Consensus 12 ~~l~v--~d~v~i~~~N~l~~~~siH--~HG~~~~--~~~~~DG~~----~------~q~~i~PG~~~~Y~f~~~~~~Gt 75 (491)
.+|.| |-+|.|+|+|.-.-++++= --+-.++ ..-..||-. | ....|.+|++..-.|... ++|+
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l-~aG~ 164 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL-PAGY 164 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC-CCce
Confidence 34444 4589999999854444322 1121111 123355631 2 123588999998777653 7999
Q ss_pred eeEeCCccccccCCceeEEEEecCC
Q 011178 76 YFYFPSLAFHKAAGGYGGIKIASRP 100 (491)
Q Consensus 76 ~wYH~H~~~q~~~Gl~G~liV~~~~ 100 (491)
|||=|-.-.|+..||++-|+|.+.-
T Consensus 165 YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 165 YWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEEccCCChhhcCCEEEEEEecCc
Confidence 9999999999999999999999754
No 60
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.67 E-value=0.11 Score=46.22 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=59.3
Q ss_pred CeEEE--eeeEEEEEEecCCCCCeeeecccCCCCC-------CCCCCCC----CCC------CCCCCCCeEEEEEEeCCC
Q 011178 12 CSLIT--HLYTHLVVLNFIYMAPLITLNGVQQRRN-------SWQDGVY----GTN------CPIPPGKNFTYVLQVKDQ 72 (491)
Q Consensus 12 ~~l~v--~d~v~i~~~N~l~~~~siH~HG~~~~~~-------~~~DG~~----~~q------~~i~PG~~~~Y~f~~~~~ 72 (491)
.||.| |=.|.|+|.|.-..++++-. -+.++ ...||.. |.. ..|.+|++..=.|+. -+
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~-~~ 160 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND-TS 160 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc-CC
Confidence 45554 45799999999766655444 22222 2246642 311 336788886666666 48
Q ss_pred ccceeEeCCccccccCCceeEEEEecCC
Q 011178 73 IGSYFYFPSLAFHKAAGGYGGIKIASRP 100 (491)
Q Consensus 73 ~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 100 (491)
+|+|||=|-.-.+..+||+|-+||-..-
T Consensus 161 ~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 161 AGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred CeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 9999999999999999999999998753
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.38 E-value=0.11 Score=43.58 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=48.1
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
..+.++.|++|.|+..+. .|- |........+.. +.+.-.++.... +.++.+|.
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~~p~g~-------------~~~~s~~g~~~~--~tF~~~G~ 67 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHN---------VETIKGMIPEGA-------------EAFKSKINEEYT--VTVTEEGV 67 (116)
T ss_pred CEEEECCCCEEEEEECCC---Cee---------EEEccCCCcCCc-------------ccccCCCCCEEE--EEeCCCEE
Confidence 347889999999998875 242 222111000000 111112455544 45578999
Q ss_pred eeeeecchhhhhcceEEEEEEecC
Q 011178 443 WNIRSENWARQYLGQQFYLRVYSS 466 (491)
Q Consensus 443 w~~HCHil~H~d~GMm~~~~V~~~ 466 (491)
+-|+|=. |...||-..+.|.++
T Consensus 68 Y~Y~C~p--H~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 68 YGVKCTP--HYGMGMVALIQVGDP 89 (116)
T ss_pred EEEEcCC--CccCCCEEEEEECCC
Confidence 9999995 999999999999875
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=94.90 E-value=0.11 Score=47.19 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=61.5
Q ss_pred ceEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCc-----eeEEEEecCccCC-----CCccCeEEEcCCce
Q 011178 142 DGLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGH-----KMLLVEVEGTHTL-----QNTYDSLDIHLGQS 211 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~-----~~~via~DG~~~~-----p~~~~~l~l~pGeR 211 (491)
+.+-+||......+|.+.+|-+|.++++|.+.. .|.|-+-.. ..-.++.||..+. +.....--|.+||+
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 367888877557999999999999999998754 666665322 2346777776441 11112335679999
Q ss_pred EEEEEEeCCCCcceEEEEEe
Q 011178 212 YSVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 212 ~dv~v~~~~~~g~~~i~~~~ 231 (491)
++..+..- ++|.|||.+..
T Consensus 153 ~~~~~~~l-~aG~YwlvC~i 171 (196)
T PF06525_consen 153 ASGVYNDL-PAGYYWLVCGI 171 (196)
T ss_pred eeEEEccC-CCceEEEEccC
Confidence 99877543 58999997754
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.22 E-value=0.23 Score=38.96 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=45.8
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|++|.| .|.+...|-+++....+ +..+ +. ...+.++.... +.++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~-~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LK-GPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------cc-ccccCCCCEEE--EECCCCEEE
Confidence 467889999988 46666789888653221 1000 11 11234555555 455789999
Q ss_pred eeeecchhhhhcceEEEEEE
Q 011178 444 NIRSENWARQYLGQQFYLRV 463 (491)
Q Consensus 444 ~~HCHil~H~d~GMm~~~~V 463 (491)
.|||=+ |- .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999998 55 48888876
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.88 E-value=0.24 Score=43.06 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=66.0
Q ss_pred EeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcceee
Q 011178 365 MAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMWN 444 (491)
Q Consensus 365 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w~ 444 (491)
+.++.|++++.++.|....-|=|=+= ++...- +.+.... ...-..---..++.+.||....+-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~--~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMI--LADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhh--hCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 46788999999999998776765553 111111 0010000 0000011245799999999999999999999999
Q ss_pred eeecchhhhhcceEEEEEEe
Q 011178 445 IRSENWARQYLGQQFYLRVY 464 (491)
Q Consensus 445 ~HCHil~H~d~GMm~~~~V~ 464 (491)
|-|-|-.|-+.||-..++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999874
No 65
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.01 E-value=0.76 Score=38.44 Aligned_cols=73 Identities=8% Similarity=-0.052 Sum_probs=48.3
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.++++.|++|.|+-++. ...|-.. +.+.+.|+. ......+|+...+.| +.||.+
T Consensus 43 ~ltV~~GdTVtw~~~~d-~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE-GGGHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECCC-CCCEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 36789999999975532 3456542 222233321 111234566666666 689999
Q ss_pred eeeecchhhhhcceEEEEEEe
Q 011178 444 NIRSENWARQYLGQQFYLRVY 464 (491)
Q Consensus 444 ~~HCHil~H~d~GMm~~~~V~ 464 (491)
.|+|=. |..+||-..+.|.
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999996 9999999999873
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.60 E-value=1.1 Score=37.76 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=54.5
Q ss_pred eeEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcc
Q 011178 362 TSVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVG 441 (491)
Q Consensus 362 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG 441 (491)
.+.+.++.|+.+.+.+.+.+ ..|-|.+-..... +.+-||....+.|.++.||
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~G 96 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKPG 96 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSSE
T ss_pred cceecccccceEeEEEEcCC-ccccccccccCcc---------------------------cccccccceeeeeeeccCC
Confidence 34578899999999999975 5687777543321 2345789999999999999
Q ss_pred eeeeeecchhhh-hcceEEEEEEe
Q 011178 442 MWNIRSENWARQ-YLGQQFYLRVY 464 (491)
Q Consensus 442 ~w~~HCHil~H~-d~GMm~~~~V~ 464 (491)
.+-..|..+=.. +..|...++|+
T Consensus 97 ~y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 97 TYYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEEE-SSSSTTGGG-EEEEEEE
T ss_pred cEEEcCccccCcCcCCCeEEEEEC
Confidence 999999986644 56677777663
No 67
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=91.55 E-value=0.96 Score=38.47 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=49.3
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.++++-|++|+|+ |.+...|-.+. .++.. |..-+++....+.....-|.. ||.+
T Consensus 55 ~v~v~pGDTVtw~--~~d~~~Hnv~~---------~~~~~-------------~~g~~~~~~~~~~s~~~Tfe~--~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTWV--NTDSVGHNVTA---------VGGMD-------------PEGSGTLKAGINESFTHTFET--PGEY 108 (128)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEE---------eCCCC-------------cccccccccCCCcceEEEecc--cceE
Confidence 3678889999995 44444676543 22111 112244444445666665554 9999
Q ss_pred eeeecchhhhhcceEEEEEEec
Q 011178 444 NIRSENWARQYLGQQFYLRVYS 465 (491)
Q Consensus 444 ~~HCHil~H~d~GMm~~~~V~~ 465 (491)
-|.|-. |.-+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999998 99999999998853
No 68
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.60 E-value=1 Score=41.76 Aligned_cols=78 Identities=9% Similarity=0.096 Sum_probs=57.0
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.|++.+++.+ ..|-|.+- +-+ ...| +-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~ip-------~~~-----------------~k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWVP-------ELG-----------------GKID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhccccc-------ccC-----------------ceEE---ecCCcEEEEEEEeCCCEE
Confidence 3477899999999999875 33554442 211 1223 447899999999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+...|-..-.. +..|...++|.++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 99999985433 577888888887653
No 69
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.29 E-value=0.74 Score=40.13 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=53.0
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEe--C----ceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceE
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQ--G----HKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYY 226 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~--~----~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~ 226 (491)
...++++.|++||+-+-|.+.. .+.|.++ + |.-..+.+| -.+--....+.|.||+...+.+.+. .+|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft-~~g~ye 137 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFT-GAGKYE 137 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEec-CCccEE
Confidence 5679999999999999999865 5566555 1 111112222 1122334789999999999999998 579999
Q ss_pred EEEEe
Q 011178 227 IVIST 231 (491)
Q Consensus 227 i~~~~ 231 (491)
+++..
T Consensus 138 ~~C~i 142 (158)
T COG4454 138 FACNI 142 (158)
T ss_pred EEecC
Confidence 97754
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.07 E-value=6.1 Score=33.31 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=46.7
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
...+.++.|++++|++-+.-. .+.|.+.+..+ .+.+-||+.-.+.++++ .+|.|+++.+-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~----------------k~d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV--IHSFWIPELGI----------------KMDAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTE----------------EEEEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCCc--cccccccccCc----------------ccccccccceeeeeeec-cCCcEEEcCccc
Confidence 578999999999999998654 46666655433 34567899999999998 689999988754
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.78 E-value=3.5 Score=32.19 Aligned_cols=65 Identities=14% Similarity=0.294 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCCeEeEEEe-Cc--eeEEEEecCccCC------C--CccCeEEEcCCceEEEEEEeCCC---CcceEEEE
Q 011178 164 YRFRISNVGISTSINFRIQ-GH--KMLLVEVEGTHTL------Q--NTYDSLDIHLGQSYSVLVRADQP---PQGYYIVI 229 (491)
Q Consensus 164 ~rlR~iN~~~~~~~~~~i~-~~--~~~via~DG~~~~------p--~~~~~l~l~pGeR~dv~v~~~~~---~g~~~i~~ 229 (491)
+.|.+.|.+.. .+.|.+. |+ .|.|...+|..+- . .......|.|||...+-.+.+.. +|+|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 56788888865 6677764 34 4555555676441 1 22467899999999999998863 79998864
No 72
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=83.76 E-value=15 Score=33.01 Aligned_cols=95 Identities=12% Similarity=-0.096 Sum_probs=56.5
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCC-CCC---CCCCccc--CCCCceeeEEeCCCCEEEEEEEc
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEW-TPA---SRLTYNL--RDTISRCTVQVYPKSWTAVYVPL 437 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~-~~~---~~~~~~~--~~p~~rDTv~v~p~~~~~irf~a 437 (491)
.+-++.|-.|.++|.|.+..+|-+ -|+..+.... .+. +.+..+. ..+.--..=-+.+|....+-|..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCccE-------EEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 366788999999999999777653 3443322100 000 0000000 00000011112235555566666
Q ss_pred cCcceeeeeecchhhhhcceEEEEEEec
Q 011178 438 DNVGMWNIRSENWARQYLGQQFYLRVYS 465 (491)
Q Consensus 438 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 465 (491)
-.||.+.+=|=+.-|...||-..+.|-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 6899999999999999999999987754
No 73
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=83.73 E-value=4.1 Score=38.96 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=56.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.|++.++..+ ..|-|.+-+.. --+.+-||....+.+.++.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~D-ViHsF~IP~l~---------------------------~k~d~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD-VIHSFWIPQLG---------------------------GKIDAIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEech-hceeEEecCCC---------------------------ceeeecCCceEEEEEecCCCeE
Confidence 4577899999999999875 44655553322 2233346788899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+-.+|+.+--. +..|-..+.|+++++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999997755 555666677766544
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=80.93 E-value=2.6 Score=32.90 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=34.3
Q ss_pred eEEEEEEecCCCCCeeeecccC-C-------C---CCCCCCCCCCCCC----CCCCCCeEEEEEEeCCC---ccceeE
Q 011178 19 YTHLVVLNFIYMAPLITLNGVQ-Q-------R---RNSWQDGVYGTNC----PIPPGKNFTYVLQVKDQ---IGSYFY 78 (491)
Q Consensus 19 ~v~i~~~N~l~~~~siH~HG~~-~-------~---~~~~~DG~~~~q~----~i~PG~~~~Y~f~~~~~---~Gt~wY 78 (491)
.+.++++|..+.+.+|.+.--. . . .=-|++|-..+|. -|+||++.+|+++.+.. +|+|..
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 4678899999888888765431 1 0 1236677655543 39999999999999733 688854
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=76.67 E-value=10 Score=31.95 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCCCCCeEEEEEEeC-CCccc-eeEeCCccccccCCceeEEE
Q 011178 55 CPIPPGKNFTYVLQVK-DQIGS-YFYFPSLAFHKAAGGYGGIK 95 (491)
Q Consensus 55 ~~i~PG~~~~Y~f~~~-~~~Gt-~wYH~H~~~q~~~Gl~G~li 95 (491)
..|.||++.+..|+++ -++|+ |-|-|-.-.+.+ .|.|.|.
T Consensus 83 kliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 83 KVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred cccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3499999999999986 25886 999998876665 5888875
No 76
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=76.22 E-value=14 Score=27.46 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=39.9
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEE
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIS 230 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~ 230 (491)
...|+++.|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+++. .+|+|+|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 467899999998888866654 334677777765442211111 11223344445665 6799999874
No 77
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=72.34 E-value=28 Score=32.18 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=44.1
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
...+.++.|+.+||++-+.... +.|.+.+. .-.+..-||..-.+.++++ .+|.|..+++..
T Consensus 116 ~~~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~----------------~~k~da~PG~~~~~~~~~~-~~G~y~~~c~e~ 176 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKDVI--HSFWVPEL----------------GGKIDAIPGQYNALWFNAD-EPGVYYGYCAEL 176 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCchh--hccccccc----------------CceEEecCCcEEEEEEEeC-CCEEEEEEehhh
Confidence 4688999999999998775433 33333322 2245567899999999998 589999988754
No 78
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=70.22 E-value=30 Score=31.84 Aligned_cols=76 Identities=8% Similarity=0.092 Sum_probs=56.6
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+.+++.+...+ ..|-|.+-... ..+|.+ ||....+.|.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp~l~------------------------~k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVPDLN------------------------LKMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceeccccC------------------------ceeecC---CCceEEEEEEcCCCEEE
Confidence 467899999999999875 44666553221 123444 78899999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEecCC
Q 011178 444 NIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 444 ~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
-.-|.-+--. +..|-..++|.+++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 9999986654 66777778887664
No 79
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=70.04 E-value=26 Score=28.74 Aligned_cols=69 Identities=14% Similarity=0.371 Sum_probs=47.2
Q ss_pred EEEEEecCCCCCeeeecccCCCCCCCCCCCCCCCCCCCCCCeEEEEEEeCCCccceeEeCCccccccCC--ceeEEEEec
Q 011178 21 HLVVLNFIYMAPLITLNGVQQRRNSWQDGVYGTNCPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAG--GYGGIKIAS 98 (491)
Q Consensus 21 ~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G--l~G~liV~~ 98 (491)
.|.++|.|.....|..|=-. .|.-.|. ..+.||+++..+|.. +-.|+--|.|+... .| ...-+.|..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S------~d~Dlg~-~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~---~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS------KDDDLGW-HVLKPGQSYSFSFRD-NFFGTTLFWCHFRW---PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC------CCccCCC-EECCCCCEEEEEEec-CcCCceeEEEEEEE---CCccEEEEEEEEe
Confidence 46799999877778877653 1222331 238999999999987 35677778899775 33 366666665
Q ss_pred CC
Q 011178 99 RP 100 (491)
Q Consensus 99 ~~ 100 (491)
..
T Consensus 71 ~~ 72 (110)
T PF05938_consen 71 SS 72 (110)
T ss_pred cc
Confidence 43
No 80
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=69.25 E-value=22 Score=31.57 Aligned_cols=76 Identities=8% Similarity=0.116 Sum_probs=53.1
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+.+++.++..+ ..|.|.+-..-. ..|.+ ||....+.|.++.||.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP~lgv------------------------K~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVPSLGI------------------------KADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeeccccCc------------------------eeecc---CCceEEEEEecCCCeEE
Confidence 356889999999999876 447665532211 23443 67888889999999999
Q ss_pred eeeecchhhh-hcceEEEEEEecCC
Q 011178 444 NIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 444 ~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
...|.-+--. +..|-..++|..++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHH
Confidence 9999985533 34566667666554
No 81
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=69.02 E-value=66 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=13.7
Q ss_pred EEEEEEcCCC-CeEeEEEeCce
Q 011178 165 RFRISNVGIS-TSINFRIQGHK 185 (491)
Q Consensus 165 rlR~iN~~~~-~~~~~~i~~~~ 185 (491)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788887764 55666665544
No 82
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=65.37 E-value=45 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=45.8
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
..++.+..|++|+|++--+.. .+.|.|.+-. -.+..-||...+..++++ .+|.|..+++..
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DV--iHsF~IP~l~----------------~k~d~iPG~~~~~~~~~~-~~G~Y~g~Cae~ 196 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADV--IHSFWIPQLG----------------GKIDAIPGMTTELWLTAN-KPGTYRGICAEY 196 (247)
T ss_pred cceEEEeCCCeEEEEEEechh--ceeEEecCCC----------------ceeeecCCceEEEEEecC-CCeEEEEEcHhh
Confidence 477889999999998876643 3455554433 445556889999999998 579999988764
Q ss_pred cc
Q 011178 233 FT 234 (491)
Q Consensus 233 ~~ 234 (491)
.+
T Consensus 197 CG 198 (247)
T COG1622 197 CG 198 (247)
T ss_pred cC
Confidence 33
No 83
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=64.41 E-value=25 Score=26.76 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=30.6
Q ss_pred EeCCCEE--EEEEEEcCCCC--eEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeC--C--CCcceEEEE
Q 011178 158 VDQGKTY--RFRISNVGIST--SINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD--Q--PPQGYYIVI 229 (491)
Q Consensus 158 v~~g~~~--rlR~iN~~~~~--~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~--~--~~g~~~i~~ 229 (491)
+.+|+.+ ++.+-|.+... .+.+++.. -+|=.+.......-.|.||+...+-++.. . .+|+|.|.+
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 3567654 67788988653 23343332 22321111111222789998776666553 2 478999877
Q ss_pred Ee
Q 011178 230 ST 231 (491)
Q Consensus 230 ~~ 231 (491)
..
T Consensus 74 ~a 75 (78)
T PF10633_consen 74 TA 75 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 84
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=64.38 E-value=9.4 Score=31.70 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=37.6
Q ss_pred EEEEEEecCCCC---CeeeecccCCCCC---CCCCCCCCCCCCCCCCCeEEEEEEeC--CCccc
Q 011178 20 THLVVLNFIYMA---PLITLNGVQQRRN---SWQDGVYGTNCPIPPGKNFTYVLQVK--DQIGS 75 (491)
Q Consensus 20 v~i~~~N~l~~~---~siH~HG~~~~~~---~~~DG~~~~q~~i~PG~~~~Y~f~~~--~~~Gt 75 (491)
-.|++.|....+ .+=|||=-...+. -.-+||.|.|.-|+||++|+|.=-.+ .+.|+
T Consensus 32 YtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 32 YTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 467889998765 4679985443221 11357777888999999999964332 45565
No 85
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=64.25 E-value=15 Score=29.45 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=41.2
Q ss_pred EeCCCEEEEEEE--EcCCCCeEeEEEeCc--eeEEEEecCccCCCCccCeE-EEcCCceEEEEEEeCCC--CcceEEEEE
Q 011178 158 VDQGKTYRFRIS--NVGISTSINFRIQGH--KMLLVEVEGTHTLQNTYDSL-DIHLGQSYSVLVRADQP--PQGYYIVIS 230 (491)
Q Consensus 158 v~~g~~~rlR~i--N~~~~~~~~~~i~~~--~~~via~DG~~~~p~~~~~l-~l~pGeR~dv~v~~~~~--~g~~~i~~~ 230 (491)
.+|||++.||++ +... ... ...+. .+.|..-+|..+.. ... .......++.-+.+++. .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~--~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFK--PPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCS--CESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccc--cccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 469999999998 6662 111 12223 35566666654411 222 34678888888888763 589999988
Q ss_pred ee
Q 011178 231 TR 232 (491)
Q Consensus 231 ~~ 232 (491)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 86
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.99 E-value=26 Score=33.14 Aligned_cols=78 Identities=6% Similarity=0.128 Sum_probs=56.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.|++.+.+.+ ..|-|.+= +-+ ...| +-||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~D-ViHsf~ip-------~~~-----------------~k~d---~~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD-VIHSWTVP-------SLG-----------------VKVD---AIPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc-cccceecc-------ccC-----------------ceeE---CCCCcceeEEEEeCCCEE
Confidence 4567899999999999975 44555442 221 1123 337888899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+...|.-+-.. |..|-..++|.++++
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECHHH
Confidence 99999987655 667777787776543
No 87
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=63.28 E-value=12 Score=28.67 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCCeEEEeeeEEEEEEecCCCC---CeeeecccCCCCCCCCCCCCC-CCCCCCCCCeEEEEEEeC----CCcccee
Q 011178 9 SLGCSLITHLYTHLVVLNFIYMA---PLITLNGVQQRRNSWQDGVYG-TNCPIPPGKNFTYVLQVK----DQIGSYF 77 (491)
Q Consensus 9 ~~G~~l~v~d~v~i~~~N~l~~~---~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~Y~f~~~----~~~Gt~w 77 (491)
.+|+++ .+.++|+|....+ .++-+-. +.+|...... +-..|+||++.+..|.+. -.+|+|-
T Consensus 2 ~~G~~~----~~~~tv~N~g~~~~~~v~~~l~~----P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETV----TVTLTVTNTGTAPLTNVSLSLSL----PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEE----EEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEE----EEEEEEEECCCCceeeEEEEEeC----CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 466666 3568899997544 2222221 3455522211 112599999988888774 1367764
No 88
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=61.33 E-value=27 Score=32.99 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=56.2
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+.|++.++..+ -.|- |+|-+-+ ..+|.+ ||....+.|+++.||.+
T Consensus 140 el~lP~g~pV~~~ltS~D-ViHS-------F~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS-VMNS-------FFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECc-hhhh-------hhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 367899999999999886 3354 4443322 134665 68888999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEecCCc
Q 011178 444 NIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 444 ~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
.-.|--+--. |..|...++|.++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 9999875544 566777787776543
No 89
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=59.04 E-value=30 Score=34.71 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=33.1
Q ss_pred eEEEEEEecCCCC--------Ceeeeccc-CCC--CCCCCC-----CCCC-CCCCCCCCCeEEEEEEeC
Q 011178 19 YTHLVVLNFIYMA--------PLITLNGV-QQR--RNSWQD-----GVYG-TNCPIPPGKNFTYVLQVK 70 (491)
Q Consensus 19 ~v~i~~~N~l~~~--------~siH~HG~-~~~--~~~~~D-----G~~~-~q~~i~PG~~~~Y~f~~~ 70 (491)
++.+.++|+.+++ .+++|-.- .+. .+.+-| |-.. .+.||+|||+.+.+.++.
T Consensus 285 ~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 285 RVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred EEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 4667888887654 34555543 221 222223 5554 457899999999999985
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=56.99 E-value=92 Score=24.31 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=41.2
Q ss_pred EEEeCCCEE--EEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeE-EEcCCceEEEEEEeCC-CCcceEEEEEe
Q 011178 156 FTVDQGKTY--RFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSL-DIHLGQSYSVLVRADQ-PPQGYYIVIST 231 (491)
Q Consensus 156 ~~v~~g~~~--rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l-~l~pGeR~dv~v~~~~-~~g~~~i~~~~ 231 (491)
-.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+.... .+|.|.|++..
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 345677766 577899987754444333 23455544 33445 7899999988888753 57889888765
Q ss_pred e
Q 011178 232 R 232 (491)
Q Consensus 232 ~ 232 (491)
.
T Consensus 84 D 84 (101)
T PF07705_consen 84 D 84 (101)
T ss_dssp S
T ss_pred e
Confidence 4
No 91
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=55.41 E-value=19 Score=36.08 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCCeEEEeeeEEEEEEecCCCCCe---------------eeecccCCCCCCCCC-CCCC-CCCCCCCCCeEEEEEEeCCC
Q 011178 10 LGCSLITHLYTHLVVLNFIYMAPL---------------ITLNGVQQRRNSWQD-GVYG-TNCPIPPGKNFTYVLQVKDQ 72 (491)
Q Consensus 10 ~G~~l~v~d~v~i~~~N~l~~~~s---------------iH~HG~~~~~~~~~D-G~~~-~q~~i~PG~~~~Y~f~~~~~ 72 (491)
+|.+|+++ ++|+|+.+++.. +.-+--..+..-..+ |--. .+.||+||++.+.+.++.+.
T Consensus 261 pgR~l~~~----l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA 336 (381)
T PF04744_consen 261 PGRTLTMT----LTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDA 336 (381)
T ss_dssp SSSEEEEE----EEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-H
T ss_pred CCcEEEEE----EEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehh
Q ss_pred c------------------cceeEeCCccccccCCceeEEE
Q 011178 73 I------------------GSYFYFPSLAFHKAAGGYGGIK 95 (491)
Q Consensus 73 ~------------------Gt~wYH~H~~~q~~~Gl~G~li 95 (491)
+ |.+++.+-.+..+..=+.|++|
T Consensus 337 ~WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 337 AWEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp HHHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred HHHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 92
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=55.39 E-value=15 Score=37.42 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCCCCCCeEEEEEEeCCCccceeEeCCccccccCCceeEEEEecCC
Q 011178 55 CPIPPGKNFTYVLQVKDQIGSYFYFPSLAFHKAAGGYGGIKIASRP 100 (491)
Q Consensus 55 ~~i~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 100 (491)
..|.||.+.++.+++ .+|||=|+|-.+ ..+.|.|+|.+..
T Consensus 80 EnIaPG~s~~l~~~L--~pGtY~~~C~~~----~~~~g~l~Vtg~~ 119 (375)
T PRK10378 80 ENIAPGFSQKMTANL--QPGEYDMTCGLL----TNPKGKLIVKGEA 119 (375)
T ss_pred cccCCCCceEEEEec--CCceEEeecCcC----CCCCceEEEeCCC
Confidence 469999999988887 599999999332 3458999998753
No 93
>COG1470 Predicted membrane protein [Function unknown]
Probab=55.32 E-value=1.1e+02 Score=31.98 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=54.9
Q ss_pred ceEEEeCCC--EEEEEEEEcCCC--CeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceE--EEEEEeCC--CCcce
Q 011178 154 NTFTVDQGK--TYRFRISNVGIS--TSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSY--SVLVRADQ--PPQGY 225 (491)
Q Consensus 154 ~~~~v~~g~--~~rlR~iN~~~~--~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~--dv~v~~~~--~~g~~ 225 (491)
..+++.+|+ ..+++|-|.|+. ..+.+.+++-.=|-+.+|+..+ + .|.||+|- ++-++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 567888886 468999999965 4566777776667788887643 2 24566655 45555554 46899
Q ss_pred EEEEEeeccCCCcceEEEEEec
Q 011178 226 YIVISTRFTSQVLSATSVLHYS 247 (491)
Q Consensus 226 ~i~~~~~~~~~~~~~~ail~y~ 247 (491)
.+......+ + ......||+.
T Consensus 462 ~i~i~~ksD-q-~s~e~tlrV~ 481 (513)
T COG1470 462 RITITAKSD-Q-ASSEDTLRVV 481 (513)
T ss_pred EEEEEEeec-c-ccccceEEEE
Confidence 998776544 2 2233445554
No 94
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=54.17 E-value=40 Score=34.80 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.6
Q ss_pred EEeCCCCEEEEEEEccCcceeeee----ecchhhhhcceEE
Q 011178 423 VQVYPKSWTAVYVPLDNVGMWNIR----SENWARQYLGQQF 459 (491)
Q Consensus 423 v~v~p~~~~~irf~adnpG~w~~H----CHil~H~d~GMm~ 459 (491)
+.+.|....++-|.++.||.|++- ||.++-|..|-|.
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rml 634 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRML 634 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhcccee
Confidence 455678899999999999999876 5665555555543
No 95
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=50.25 E-value=75 Score=32.42 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=57.1
Q ss_pred eEEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCC
Q 011178 143 GLVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPP 222 (491)
Q Consensus 143 ~~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~ 222 (491)
.++|+........+++++|+ ++|.+.|.+... +.|.++ +|..+. ...-.|+||.+..+.+++ .+
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEec--CC
Confidence 46777766558899999995 999999998663 334443 232210 112379999988888887 47
Q ss_pred cceEEEEEeeccCCCcceEEEEEecCC
Q 011178 223 QGYYIVISTRFTSQVLSATSVLHYSNS 249 (491)
Q Consensus 223 g~~~i~~~~~~~~~~~~~~ail~y~~~ 249 (491)
|+|.+.+... ....+.+.+.+.
T Consensus 97 GtY~~~C~~~-----~~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL-----TNPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC-----CCCCceEEEeCC
Confidence 9999987432 122456666654
No 96
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.19 E-value=54 Score=31.04 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=55.8
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ -. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-Vi-------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED-VL-------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCc-cc-------cceeccccCC-----------------ccccC---CCceEEEEEEeCCceE
Confidence 4567899999999999876 22 4565544431 23433 7888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+-..|.-+-.. |..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHH
Confidence 99999986544 56777777777654
No 97
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=48.76 E-value=74 Score=30.33 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=56.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.|++.++..+ ..|-|.+-.. + ..+|.+ ||....+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~D-ViHsf~iP~l-------g-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD-VLHSFAVPSL-------G-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCC-cccceeeccc-------C-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 4577899999999999875 4466555322 1 134544 6778888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+.-.|.-+-.. +.-|-..++|+++++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999987655 566777777776643
No 98
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=48.40 E-value=56 Score=30.59 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=56.0
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+.|++.+.+.+ -.|- |+|=+-+ ..+|.+ ||....+.|.++.||.+
T Consensus 131 ~l~iP~g~~v~~~ltS~D-ViHs-------f~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD-TMTS-------FWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCc-hhhh-------hhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEE
Confidence 366899999999999886 3344 4442221 235665 78899999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEecCCc
Q 011178 444 NIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 444 ~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
--.|=-+--. +.-|...++|.++++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 9999865544 556777788776654
No 99
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.00 E-value=80 Score=29.91 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=54.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ ..| .|+|-+-| ...|.+ ||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED-VLH-------SWTVPALG-----------------VKMDAV---PGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCc-ccc-------cccccccC-----------------ceeEec---CCceEEEEEEeCCcEE
Confidence 4567899999999999886 334 34443332 123443 7888888899999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+.--|.-+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECHH
Confidence 99999986655 45566667766554
No 100
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=46.62 E-value=90 Score=22.92 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEE
Q 011178 155 TFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVE 190 (491)
Q Consensus 155 ~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via 190 (491)
++++.+|+..+||.-.+ ..|.+.+-..+|..
T Consensus 1 ~~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~ 31 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAG-----QRLRVESGRVWLTR 31 (63)
T ss_pred CEEeCCCceEEeEcCCC-----cEEEEccccEEEEC
Confidence 36777888888885433 23667667777644
No 101
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=46.49 E-value=82 Score=29.77 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=55.2
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.|++.+++.+ ..|-|.+- +-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~vP-------~~~-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTVP-------SLG-----------------VKVDAV---PGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-cccccccc-------ccC-----------------cceecC---CCceEEEEEEeCCCEE
Confidence 4567899999999999975 44544443 222 122333 7888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+..-|.-+-.. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHHH
Confidence 99999876655 566777777776543
No 102
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=46.46 E-value=1.6e+02 Score=24.80 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=36.7
Q ss_pred eEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccC-CCCccCeEEEcCCceEEEEEEeCC
Q 011178 155 TFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT-LQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 155 ~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~-~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
.|++.....|+|.+... ...+|.|+|.. |++.++..- .......+.|..|++|.|.|...+
T Consensus 51 ~i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 35555555789988433 34678888763 344433221 122334678888888888887654
No 103
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=45.89 E-value=1.2e+02 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=40.4
Q ss_pred eEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccC-------CCCccCeEEEcCCceEEEEEEeCC
Q 011178 155 TFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT-------LQNTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 155 ~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~-------~p~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
.|++..-..|+|++-.-+ ..+|.|+|..+ ++.++..- .......+.|..|++|.|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 456666668999998433 57788888764 55555432 234456788999999999998764
No 104
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.18 E-value=1.9e+02 Score=26.62 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=39.5
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
..+.+..|+.+||++--... .+.|.+.+.. -.+..-||..-.+.++++ .+|.|..+.+..
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~----------------~k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~ 175 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV--IHSFSVPDLN----------------LKMDAIPGRINHLFFCPD-RHGVFVGYCSEL 175 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc--ccceeccccC----------------ceeecCCCceEEEEEEcC-CCEEEEEEeehh
Confidence 45777788877777755443 3444443322 234455899999999988 579999887653
No 105
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=42.58 E-value=15 Score=31.30 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=29.3
Q ss_pred EEEEEEecCCCCC---eeeecccCCCC---CCCCCCCCCCCCCCCCCCeEEEE
Q 011178 20 THLVVLNFIYMAP---LITLNGVQQRR---NSWQDGVYGTNCPIPPGKNFTYV 66 (491)
Q Consensus 20 v~i~~~N~l~~~~---siH~HG~~~~~---~~~~DG~~~~q~~i~PG~~~~Y~ 66 (491)
-.|++.|..+++. +-||-=....+ .-.-+||.|.|.-|.||++|.|.
T Consensus 33 Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 33 YTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 5788899877653 34554222111 01145777777889999988875
No 106
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=41.92 E-value=1.1e+02 Score=28.81 Aligned_cols=77 Identities=5% Similarity=0.059 Sum_probs=54.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ ..| .|+|-+-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED-VLH-------SWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECc-ccc-------cccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 4567899999999999886 333 34443322 123443 7888899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+..-|.-+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999986655 55677777776654
No 107
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.81 E-value=11 Score=29.99 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=26.2
Q ss_pred EEEEEEecCCCCC---eeeecccCCCC---CCCCCCCCCCCCCCCCCCeEEEEEE
Q 011178 20 THLVVLNFIYMAP---LITLNGVQQRR---NSWQDGVYGTNCPIPPGKNFTYVLQ 68 (491)
Q Consensus 20 v~i~~~N~l~~~~---siH~HG~~~~~---~~~~DG~~~~q~~i~PG~~~~Y~f~ 68 (491)
-.|++.|..+.+. +-||-=....+ .-.-+||.|.|.-|.||++|+|.=-
T Consensus 16 Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~ 70 (90)
T PF04379_consen 16 YRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSG 70 (90)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCC
Confidence 4677889877653 34664222111 1113577777777999998888643
No 108
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.18 E-value=1.2e+02 Score=28.68 Aligned_cols=77 Identities=6% Similarity=0.052 Sum_probs=54.7
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ -.| .|+|-+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAED-VLH-------SWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecc-hhh-------cccccccC-----------------ceeEec---CCceEEEEEEEcccce
Confidence 4567899999999999886 333 45443332 133444 7888899999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+.--|--+-.. |.-|-..++|.+++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHH
Confidence 99999886655 55666667666554
No 109
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=39.98 E-value=95 Score=26.08 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred EEEcCcCCCcceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCC----ccCeEEEcCCceEEEEEEeC
Q 011178 144 LVINGRGSNANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQN----TYDSLDIHLGQSYSVLVRAD 219 (491)
Q Consensus 144 ~~vNG~~~~~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~----~~~~l~l~pGeR~dv~v~~~ 219 (491)
.++|-.+ .+.-.+..|+.+++|+-=-.....-.+. -.+.+...||..+-.. ....+....++++.+.++++
T Consensus 19 ~i~~~~g--~~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 19 RILDSDG--EPTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp EEEETTE--ES-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE
T ss_pred EEEeCCC--CEeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEc
Confidence 4444333 3444466888888887555544333332 3466777778655221 12345555599999999988
Q ss_pred C--CCcceEEEEEe
Q 011178 220 Q--PPQGYYIVIST 231 (491)
Q Consensus 220 ~--~~g~~~i~~~~ 231 (491)
. .+|.|.|....
T Consensus 94 ~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 94 KPLNPGEYSISVGL 107 (142)
T ss_dssp --B-SEEEEEEEEE
T ss_pred CccCCCeEEEEEEE
Confidence 6 58999998776
No 110
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=39.71 E-value=79 Score=29.84 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=37.9
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
.++.+..|+.+||++-..... |.|+| |.-.-....-||..-.+.++++ .+|.|..+.+..
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 355666666666665544432 33333 3333445555899989999998 579999877643
No 111
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=38.17 E-value=2.7e+02 Score=24.20 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=52.6
Q ss_pred ceEEEcCcCCCcceEEEeCC-CEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCc-------cCeEEEcCCceE-
Q 011178 142 DGLVINGRGSNANTFTVDQG-KTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNT-------YDSLDIHLGQSY- 212 (491)
Q Consensus 142 ~~~~vNG~~~~~~~~~v~~g-~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~-------~~~l~l~pGeR~- 212 (491)
|.-.||.-+ .+...-..| .+|-|.+=|.|.. .+.++...++|+ +||..+.|.. .+.+.|.|||--
T Consensus 51 dFaIIndPg--~i~~~~~~g~~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ 124 (154)
T COG3354 51 DFAIINDPG--QIPYVGTDGPYTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGR 124 (154)
T ss_pred cEEEecCCC--CCccccCCCceEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceee
Confidence 456677655 333333212 4788999999976 345677777765 6998775543 257889999977
Q ss_pred EEEEEeCCCCcceEEEEEe
Q 011178 213 SVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 213 dv~v~~~~~~g~~~i~~~~ 231 (491)
++.+... ..|.-.|....
T Consensus 125 ev~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 125 EVTVNEA-LSGYHRIVVSL 142 (154)
T ss_pred EEEeccC-CCcceEEEEEc
Confidence 6666554 33655555543
No 112
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=37.14 E-value=19 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=34.2
Q ss_pred eEEEee--eEEEEEEecCCCC-C--eeeecccCCCCCCCCCCCCC-------CCCCCCCCCeEEEEEEeC-CCccc
Q 011178 13 SLITHL--YTHLVVLNFIYMA-P--LITLNGVQQRRNSWQDGVYG-------TNCPIPPGKNFTYVLQVK-DQIGS 75 (491)
Q Consensus 13 ~l~v~d--~v~i~~~N~l~~~-~--siH~HG~~~~~~~~~DG~~~-------~q~~i~PG~~~~Y~f~~~-~~~Gt 75 (491)
.+.+|+ .+.|+++|.++++ . +++.......+ -|+.. ....|.||++..+++++. .++|.
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y----tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY----TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC----TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEE----CCcccccEeEEEcceeeCCCCEEEEEEEEEceeEec
Confidence 334553 6889999999876 3 45554443322 24431 113399999999999995 45655
No 113
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=34.94 E-value=60 Score=22.39 Aligned_cols=40 Identities=8% Similarity=-0.074 Sum_probs=29.6
Q ss_pred CCCceeeEE-eCCCCEEEEEEEccCcceeeeeecchhhhhc
Q 011178 416 DTISRCTVQ-VYPKSWTAVYVPLDNVGMWNIRSENWARQYL 455 (491)
Q Consensus 416 ~p~~rDTv~-v~p~~~~~irf~adnpG~w~~HCHil~H~d~ 455 (491)
.|..+-+.. .+.|+.+.++++-..-..+=+||..+.|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344444333 4567888888888888999999999999764
No 114
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.89 E-value=1.5e+02 Score=27.94 Aligned_cols=77 Identities=9% Similarity=0.147 Sum_probs=54.4
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ ..|-|.+-.. | ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~iP~l-------g-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAVPSL-------G-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-cccccccccc-------C-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 4567899999999999876 4465544322 1 134544 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+..-|--+-.. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999886655 44555666666554
No 115
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=34.61 E-value=98 Score=28.97 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=25.0
Q ss_pred CCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 198 QNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 198 p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
|.-.-....-||..-.+.++++ .+|.|+.+.+..
T Consensus 156 P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~ 189 (217)
T TIGR01432 156 PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANF 189 (217)
T ss_pred hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhh
Confidence 4334455556899999999998 579999887653
No 116
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.55 E-value=43 Score=29.19 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=23.4
Q ss_pred CCCCCCCCCeEEEEEE-e--CCCccceeEeCCc
Q 011178 53 TNCPIPPGKNFTYVLQ-V--KDQIGSYFYFPSL 82 (491)
Q Consensus 53 ~q~~i~PG~~~~Y~f~-~--~~~~Gt~wYH~H~ 82 (491)
-+.||+||++++-.+. + |...|+|.|++-.
T Consensus 95 f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 95 FDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred eCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 3678999999999993 3 3456999998764
No 117
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.29 E-value=29 Score=33.41 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=7.2
Q ss_pred ceeEeCCcc
Q 011178 75 SYFYFPSLA 83 (491)
Q Consensus 75 t~wYH~H~~ 83 (491)
.=|||||.+
T Consensus 134 VGWyHSHPg 142 (347)
T KOG1554|consen 134 VGWYHSHPG 142 (347)
T ss_pred eeeeecCCC
Confidence 349999975
No 118
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.26 E-value=1.2e+02 Score=25.03 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=27.7
Q ss_pred EEEEEEEEcCCC-CeEeEEEeCc-eeEEEEecCccCCCCccCeEEEcCCceEEEEEEeC
Q 011178 163 TYRFRISNVGIS-TSINFRIQGH-KMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD 219 (491)
Q Consensus 163 ~~rlR~iN~~~~-~~~~~~i~~~-~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~ 219 (491)
.|+++|+|.+.. ..+.+++.|. .+.+ . .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEE
Confidence 589999999865 4556666663 2222 0 134788899999887776553
No 119
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.20 E-value=1.1e+02 Score=24.25 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred EEEEEEEEcCCCCeEeEEEeCceeEEEEecCccC----CCCccCeEEEcCCceEEE
Q 011178 163 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT----LQNTYDSLDIHLGQSYSV 214 (491)
Q Consensus 163 ~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~----~p~~~~~l~l~pGeR~dv 214 (491)
.|++||-|.+.. .+.|-...+.+...||... +-+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 478999999976 3444455666666666421 112224556888886543
No 120
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.67 E-value=1.7e+02 Score=23.82 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred ceEEEeCC--CEEEEEEEEcCCCCeEeEEEeCceeE--------EEEecCccCCCCccCeEEEcCCceEEEEEEe
Q 011178 154 NTFTVDQG--KTYRFRISNVGISTSINFRIQGHKML--------LVEVEGTHTLQNTYDSLDIHLGQSYSVLVRA 218 (491)
Q Consensus 154 ~~~~v~~g--~~~rlR~iN~~~~~~~~~~i~~~~~~--------via~DG~~~~p~~~~~l~l~pGeR~dv~v~~ 218 (491)
..+.+.+| ++++|++.|.|.. .+++.-+-|-+. --++=|..+.=..-.++.+.||+.-+|.+..
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGDR-PVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCCC-ceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 35788888 4789999999954 555443333222 2222333333333467888899888887654
No 121
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.20 E-value=52 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.5
Q ss_pred eCCCCEEEEEEEc-cCc---ceeeeeecch
Q 011178 425 VYPKSWTAVYVPL-DNV---GMWNIRSENW 450 (491)
Q Consensus 425 v~p~~~~~irf~a-dnp---G~w~~HCHil 450 (491)
|+||..++|.++. .|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 4689999999965 566 8899998763
No 122
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.05 E-value=2.7e+02 Score=26.24 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=41.9
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEe
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~ 231 (491)
..++.+..|+.+||++-+.... |.|.+.+.. -.+..-||..-.+.++++ .+|.|+..++.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~DVi--Hsf~ip~~~----------------~k~d~~Pg~~~~~~~~~~-~~g~y~~~C~e 198 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSADVI--HSWTVPSLG----------------VKVDAIPGRLNQLSFEPK-RPGVFYGQCSE 198 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCccc--cceeccccC----------------ceeECCCCcceeEEEEeC-CCEEEEEECcc
Confidence 3578899999999998875533 444443322 234455888888999988 57999877654
No 123
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.17 E-value=2e+02 Score=27.10 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=55.0
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+...+ ..|-|.+ =+-+ ..+|.+ ||..-.+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~v-------P~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~ 191 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD-VLHSWTV-------PSLG-----------------VKIDAV---PGRLNQVGFFINRPGV 191 (226)
T ss_pred ceEEEecCCEEEEEEecCc-cccceec-------cccC-----------------ccccCC---CCcEEEEEEEcCCCEE
Confidence 4577899999999999876 4455444 2222 134655 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+.--|--+--. |.-|-..++|.+++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 192 FYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 99999876544 45566667776554
No 124
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=28.44 E-value=3e+02 Score=21.73 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=35.6
Q ss_pred EeCCCEE--EEEEEEcCCCCeEeEEEeCc-----eeEEEEecCccCCCCccCeEEEcCCceEEEEEEeC-C-CCcceEE
Q 011178 158 VDQGKTY--RFRISNVGISTSINFRIQGH-----KMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRAD-Q-PPQGYYI 227 (491)
Q Consensus 158 v~~g~~~--rlR~iN~~~~~~~~~~i~~~-----~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~-~-~~g~~~i 227 (491)
+..|++| .+.|.|.|.. ..+|++.-. .|.+ ++ ..-.|+||+..++.|++. . ..|.|.-
T Consensus 16 v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EccCCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 4566666 5889999966 455554321 1111 22 233599999999999887 3 3465543
No 125
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.30 E-value=2.1e+02 Score=26.99 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=54.4
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+...+ ..|- |+|=+-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VLHS-------WAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-cccc-------ccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 4567899999999999876 3344 4442222 123443 6788888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+-.-|.-+-.. |..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 99999986654 56677777776554
No 126
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.13 E-value=2.4e+02 Score=26.81 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=54.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+.+.+ ..|-|.+ -+-| ...|.+ ||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViHsf~v-------p~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLHSFAV-------PSLS-----------------VKIDAV---PGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhccccc-------cccC-----------------ceeEcc---CCceEeEEEEeCCCEE
Confidence 4567899999999999885 4454444 2222 123433 6888888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+-.-|.-+-.. |.-|-..++|+++++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHHH
Confidence 99999876544 555666677766543
No 127
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=26.80 E-value=51 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEeC
Q 011178 47 QDGVYGTNCPIPPGKNFTYVLQVK 70 (491)
Q Consensus 47 ~DG~~~~q~~i~PG~~~~Y~f~~~ 70 (491)
.||=-...||+..|++++|.+..+
T Consensus 65 ~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 65 TDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCcccEeCCCcCCcEEEEEEeee
Confidence 455222479999999999999775
No 128
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.52 E-value=2.6e+02 Score=26.33 Aligned_cols=78 Identities=9% Similarity=0.182 Sum_probs=54.9
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+...+ ..|-|-+- +-+ ..+|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~vp-------~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHSWTVP-------SLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhheecc-------ccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 4567899999999999876 44554442 221 134554 6888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+.--|--+--. |.-|-..++|+++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
Confidence 99999876544 455666677766543
No 129
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=25.91 E-value=1.9e+02 Score=24.65 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=30.9
Q ss_pred EEEEEEEEcCCCCeEeEEEeCceeEEEEecCccC----CCCccCeEEEcCCceEEE
Q 011178 163 TYRFRISNVGISTSINFRIQGHKMLLVEVEGTHT----LQNTYDSLDIHLGQSYSV 214 (491)
Q Consensus 163 ~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~----~p~~~~~l~l~pGeR~dv 214 (491)
.|++||.|.+.. ...|-...+.+...||... +.+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 478999998754 3556667777777777532 112224556888886543
No 130
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=34 Score=33.72 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=6.8
Q ss_pred eeEeCCcc
Q 011178 76 YFYFPSLA 83 (491)
Q Consensus 76 ~wYH~H~~ 83 (491)
=|||||.+
T Consensus 119 GWYHSHP~ 126 (316)
T KOG1555|consen 119 GWYHSHPG 126 (316)
T ss_pred eeccCCCC
Confidence 49999976
No 131
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=25.11 E-value=3.5e+02 Score=24.10 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
..+.+..|..+||++--+-. .|.|.+.....+ +..-||..-.+.+.+. .+|.|+...+-.
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK----------------~DavPGr~n~l~~~~~-~~G~y~gqCsEl 132 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIK----------------ADAIPGRLHKINTFIL-REGVFYGQCSEM 132 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCce----------------eeccCCceEEEEEecC-CCeEEEEEcchh
Confidence 35677788877776655443 355555444333 2333676667777777 579999877643
No 132
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=25.09 E-value=1.9e+02 Score=28.81 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=52.3
Q ss_pred EEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCccee
Q 011178 364 VMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGMW 443 (491)
Q Consensus 364 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~w 443 (491)
.+.++.|+-|++.+...+- .|- |+|=+-+. ..|.+ ||-...+.|.+|.||.+
T Consensus 152 eL~iP~g~pV~f~lTS~DV-iHS-------F~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSV-MNS-------FFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchh-hhh-------hhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 3678999999999998863 244 44433221 23444 68888999999999999
Q ss_pred eeeecchhhh-hcceEEEEEEe
Q 011178 444 NIRSENWARQ-YLGQQFYLRVY 464 (491)
Q Consensus 444 ~~HCHil~H~-d~GMm~~~~V~ 464 (491)
.-.|-..--. +..|...+.+.
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEChhhcCccccCCeEEEEEE
Confidence 9999986644 45666666665
No 133
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.96 E-value=2.9e+02 Score=22.41 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=38.4
Q ss_pred eEEEeCC-CEEEEEEEEcCCCCeEeEEEeCcee--------EEEEecCccCCCCccCeEEEcCCceEEEEEEe
Q 011178 155 TFTVDQG-KTYRFRISNVGISTSINFRIQGHKM--------LLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRA 218 (491)
Q Consensus 155 ~~~v~~g-~~~rlR~iN~~~~~~~~~~i~~~~~--------~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~ 218 (491)
.+++.+| ++..+.+.|.|.. .+++.-+-|-+ .--++-|..+.=..-.++.+.|||.-+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDR-PIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCc-ceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4667777 4568999999954 55543333322 22233333333333468899999998887654
No 134
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=24.82 E-value=46 Score=31.80 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=6.2
Q ss_pred eEeCCcc
Q 011178 77 FYFPSLA 83 (491)
Q Consensus 77 wYH~H~~ 83 (491)
|||||.+
T Consensus 94 wYHSHP~ 100 (244)
T cd08068 94 WYHSHPH 100 (244)
T ss_pred EEecCCC
Confidence 9999975
No 135
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.40 E-value=2.8e+02 Score=26.15 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=39.5
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEe
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~ 231 (491)
..+.+..|+.+||++-.... .|.|.+.+... .+..-||..-.+.++++ .+|.|+...+.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLGV----------------KVDAVPGRLNQIGFTIT-RPGVFYGQCSE 198 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccCc----------------ceecCCCceEEEEEEeC-CCEEEEEEChh
Confidence 46778888888888877543 34444433322 23445888888888888 57999877654
No 136
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.31 E-value=1.7e+02 Score=29.11 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=38.8
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEee
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVISTR 232 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 232 (491)
.++.+..|+.+||++-..... |.|+| |...-.+..-||..-.+.+.++ .+|.|..++...
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEy 210 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASY 210 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcC-CCEEEEEEChhh
Confidence 345566666666665554432 33332 4444556666888889999988 589999887654
No 137
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.70 E-value=2.7e+02 Score=26.90 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=55.4
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+...+ -.|-|- |=+-+ ..+|.+ ||..-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViHSf~-------vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLHSWT-------VPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccccee-------ccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 4567899999999999876 435443 32222 133544 5777788999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+.-.|.-+--. +..|-..++|.++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 99999986644 667777787776543
No 138
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.68 E-value=3.5e+02 Score=25.65 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=55.6
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.+...+ ..|-|-+- +-+ ...|.+ ||..-.+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViHSf~vP-------~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIHSWALP-------SLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-cccccccc-------ccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 4456899999999999886 44554442 221 134555 6788888999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCCc
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSAN 468 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~~ 468 (491)
+.--|--+--. |..|-..++|.++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHHH
Confidence 99999875543 566777787776543
No 139
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.22 E-value=3.2e+02 Score=25.67 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=54.3
Q ss_pred eEEeecCCcEEEEEEEcCCCCCCceeccCCCeEEEeeccCCCCCCCCCCcccCCCCceeeEEeCCCCEEEEEEEccCcce
Q 011178 363 SVMAADFRGFAEVVFENPEDTLQSWHIDGHNFFAVGMDGGEWTPASRLTYNLRDTISRCTVQVYPKSWTAVYVPLDNVGM 442 (491)
Q Consensus 363 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~p~~~~~irf~adnpG~ 442 (491)
+.+.++.|+.+++.++..+ ..|-|.+ =+-+ ...|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf~v-------P~lg-----------------~k~dai---PG~~n~~~~~~~~~G~ 191 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD-VLHSWTL-------PSLG-----------------LKMDAV---PGRLNQLAFLSSRPGS 191 (225)
T ss_pred ceEEEecCCEEEEEEEeCC-hhhcccc-------cccc-----------------ccccCC---CCeEEEEEEEcCCCEE
Confidence 4567899999999999876 3455444 2221 123544 7888889999999999
Q ss_pred eeeeecchhhh-hcceEEEEEEecCC
Q 011178 443 WNIRSENWARQ-YLGQQFYLRVYSSA 467 (491)
Q Consensus 443 w~~HCHil~H~-d~GMm~~~~V~~~~ 467 (491)
+---|.-+--. |.-|-..++|.+++
T Consensus 192 ~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 192 FYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999986544 45566667776554
No 140
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.80 E-value=3.7e+02 Score=25.35 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred cceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEE
Q 011178 153 ANTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVR 217 (491)
Q Consensus 153 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~ 217 (491)
+|.+++++|+...+|++..+.. -.|...+.-+-++..+-++...+.|.++...|+=+.++
T Consensus 75 PPl~rl~pg~~q~vRii~~~~l-----p~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyR 134 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSGS-----PLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQ 134 (230)
T ss_pred CCeEEECCCCceEEEEEECCCC-----CCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEe
Confidence 7899999999999999977521 22444444444444443222223444444444444443
No 141
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.47 E-value=78 Score=26.63 Aligned_cols=18 Identities=28% Similarity=0.818 Sum_probs=15.6
Q ss_pred CCCCCCCCCeEEEEEEeC
Q 011178 53 TNCPIPPGKNFTYVLQVK 70 (491)
Q Consensus 53 ~q~~i~PG~~~~Y~f~~~ 70 (491)
..||+.+|+.++|.++..
T Consensus 78 ~~CPl~~G~~~~~~~~~~ 95 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVN 95 (127)
T ss_pred ccCCcCCCCEEEEEEEEe
Confidence 369999999999998774
No 142
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=21.37 E-value=80 Score=26.57 Aligned_cols=18 Identities=39% Similarity=0.958 Sum_probs=16.1
Q ss_pred CCCCCCCCCeEEEEEEeC
Q 011178 53 TNCPIPPGKNFTYVLQVK 70 (491)
Q Consensus 53 ~q~~i~PG~~~~Y~f~~~ 70 (491)
..||+..|++++|.+.++
T Consensus 75 ~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCCCcCCcEEEEEEeee
Confidence 679999999999999774
No 143
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=21.32 E-value=40 Score=28.07 Aligned_cols=7 Identities=14% Similarity=0.467 Sum_probs=6.0
Q ss_pred eEeCCcc
Q 011178 77 FYFPSLA 83 (491)
Q Consensus 77 wYH~H~~ 83 (491)
|||||..
T Consensus 70 ~YHSHP~ 76 (119)
T cd08058 70 WYHSHPT 76 (119)
T ss_pred EEecCCC
Confidence 9999973
No 144
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=21.07 E-value=75 Score=27.76 Aligned_cols=17 Identities=29% Similarity=0.917 Sum_probs=15.7
Q ss_pred CCCCCCCCeEEEEEEeC
Q 011178 54 NCPIPPGKNFTYVLQVK 70 (491)
Q Consensus 54 q~~i~PG~~~~Y~f~~~ 70 (491)
-||+.+|++++|.+.++
T Consensus 107 ~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 107 YCPLSAGEDYTYLNSLP 123 (158)
T ss_pred cCcccCCCceEEEEEee
Confidence 59999999999999886
No 145
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.75 E-value=2.9e+02 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=38.7
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEe
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~ 231 (491)
..+.+..|+.+||++--... .|.|.+.+.. -.+..-||.+-.+.++++ .+|.|+...+.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~----------------~k~da~PG~~~~~~~~~~-~~G~~~g~C~e 198 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--LHSWAVPALG----------------VKMDAVPGRLNQTAFIAS-RPGVFYGQCSE 198 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--ccceeccccC----------------CccccCCCceEEEEEEeC-CceEEEEEChh
Confidence 46778888887777765543 3444443332 223445899999999888 57999877654
No 146
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.69 E-value=3.2e+02 Score=25.77 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=37.8
Q ss_pred ceEEEeCCCEEEEEEEEcCCCCeEeEEEeCceeEEEEecCccCCCCccCeEEEcCCceEEEEEEeCCCCcceEEEEEe
Q 011178 154 NTFTVDQGKTYRFRISNVGISTSINFRIQGHKMLLVEVEGTHTLQNTYDSLDIHLGQSYSVLVRADQPPQGYYIVIST 231 (491)
Q Consensus 154 ~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~~~~~via~DG~~~~p~~~~~l~l~pGeR~dv~v~~~~~~g~~~i~~~~ 231 (491)
..+.+..|+.+||++--... .|.|.+.... -.+..-||..-.+.++++ .+|.|+...+.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg----------------~k~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--LHSWAVPSLG----------------LKTDAIPGRLNQTTLMST-RPGLYYGQCSE 198 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--cccccccccc----------------cceecCCCceEEEEEecC-CcEEEEEECcc
Confidence 46777888877777765543 3444443332 223444788888888888 57999876654
No 147
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=20.52 E-value=4.3e+02 Score=22.20 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=36.7
Q ss_pred EEEEEEEEcCCCCeEeEEEeCc-eeEEEEecCccCCC------CccCeEEEcCCceEEEEEEeCC
Q 011178 163 TYRFRISNVGISTSINFRIQGH-KMLLVEVEGTHTLQ------NTYDSLDIHLGQSYSVLVRADQ 220 (491)
Q Consensus 163 ~~rlR~iN~~~~~~~~~~i~~~-~~~via~DG~~~~p------~~~~~l~l~pGeR~dv~v~~~~ 220 (491)
.++|.+-|.|...- .|.|. .+.....||..+.. .....+.|.||+++.+.|....
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 45899999887622 23443 24445777774421 1345799999999999998763
No 148
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.13 E-value=3.3e+02 Score=23.89 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=38.1
Q ss_pred eEEEeCC-CEEEEEEEEcCCCCeEeEEEeCceeE--------EEEecCccCCCCccCeEEEcCCceEEEEEEe
Q 011178 155 TFTVDQG-KTYRFRISNVGISTSINFRIQGHKML--------LVEVEGTHTLQNTYDSLDIHLGQSYSVLVRA 218 (491)
Q Consensus 155 ~~~v~~g-~~~rlR~iN~~~~~~~~~~i~~~~~~--------via~DG~~~~p~~~~~l~l~pGeR~dv~v~~ 218 (491)
.|.+.+| ++..|++.|.|.. .+.+.-+-|-+. --++-|..+.=..-..+.+.||+.-+|.+..
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDR-PIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 111 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDR-PIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP 111 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCC-ceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE
Confidence 4777777 5668999999954 555443333222 2233333332233467888888888887653
Done!