BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011179
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 54 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 210
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 211 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 247
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 248 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 289
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 326
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 39 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 93
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 123
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 124 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 38 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 95 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 150 SFDESVRIWDVK 161
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 191
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 192 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 236
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 297 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 52 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 208
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 209 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 245
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 246 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 287
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 324
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 37 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 91
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 121
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 122 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 36 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 93 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 148 SFDESVRIWDVK 159
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 189
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 190 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 234
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 295 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G A I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + + S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L A S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSPEFQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 172
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 217
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 172
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 217
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 192
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 193 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 229
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 230 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 271
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 308
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317
K I H ++ V + +S +L+ S SDD K+WD GK L GH
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSN 114
Query: 318 GITFIDSRGDGRYLISNGKDQAIKLWDIR 346
+ + ++S D+++++WD++
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 173
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 174 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 218
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 279 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 26 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 83 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 182
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 183 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 219
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 220 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 261
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 298
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 11 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 65
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 95
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 96 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 10 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 67 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 122 SFDESVRIWDVK 133
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 162
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 163 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 207
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 268 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 223
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 224 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 265
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 15 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 71 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 126 SFDESVRIWDVK 137
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 166
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 167 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 211
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 272 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 47 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 203
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 204 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 240
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 241 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 282
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 319
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 32 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 86
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 116
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 117 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 31 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 88 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 143 SFDESVRIWDVK 154
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 183
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 184 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 228
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 289 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 186
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 187 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 223
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 224 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 265
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 15 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 71 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 126 SFDESVRIWDVK 137
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 166
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 167 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 211
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 272 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 31 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 88 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 187
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 188 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 224
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 225 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 266
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 303
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 16 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 70
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 100
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 101 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260
G+ +S + + L F+ A G++ + S+KFS +G L + S+D I ++ K
Sbjct: 1 GSTQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
I H ++ V + +S +L+ S SDD K+WD GK L GH +
Sbjct: 58 FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVF 112
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIR 346
+ ++S D+++++WD++
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 167
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 168 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 212
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 273 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 35 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 92 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 191
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 192 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 228
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 229 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 270
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 307
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 20 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 74
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 104
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 105 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 19 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 76 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 131 SFDESVRIWDVK 142
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 172
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 217
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNVK 305
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 278 QK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 29 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 86 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 185
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 186 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 222
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 223 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWN 264
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 301
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 14 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 68
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 98
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 99 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 13 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 70 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 125 SFDESVRIWDVK 136
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 165
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 166 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 210
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 271 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLE 317
K L GH +
Sbjct: 275 VQK----LQGHTD 283
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ K + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFSV---TGGKWIVSGSEDNLVYIWN 268
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 17 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 74 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 335 GKDQAIKLWDIR 346
D+++++WD++
Sbjct: 129 SFDESVRIWDVK 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DNL +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLE 317
K L GH +
Sbjct: 275 VQK----LQGHTD 283
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK------------------- 226
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWN 268
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ S SDD K+WD GK L GH + + ++S D+++++W
Sbjct: 82 LLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 344 DIR 346
D++
Sbjct: 138 DVK 140
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G + K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DN+ +W+ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 68/337 (20%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR---RCLNVKG 306
+ ++D++ + AH+ V+ V F + G LI S S D LC++WD +CL
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 189
Query: 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366
++ ++F+ +G+Y+++ D +KLWD K
Sbjct: 190 ----LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK------------------- 226
Query: 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426
+ + TY GH + I +FS TG K+I +GS D+ VY+++
Sbjct: 227 ---------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWN 268
Query: 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463
L + E V L+ HT V + HP++ ++ S++ + D
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440
+ T KGHS + C+F+P I +GS D V ++D+ +G + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ S SDD K+WD GK L GH + + ++S D+++++W
Sbjct: 82 LLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 344 DIR 346
D++
Sbjct: 138 DVK 140
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186
+ F+ +L V+G +RI+DV+ G + K + A S V+ + D +V
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL-KTLPAHSD--PVSAVHFNRDGSLIVS 169
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
+S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 170 SSYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAAT 214
Query: 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNLCKVWDRRCLNV 304
D+ + ++D K H ++ + F G I SGS+DN+ +W+ + +
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLW 343
K L GH + + + S D+ IKLW
Sbjct: 275 VQK----LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 61/356 (17%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 106 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 161
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S ++ + FS DG+ + + S D +
Sbjct: 162 TVKLWNRNGQLLQTLT-----------------GHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311
+++ L + H+S V V F + G I S SDD K+W+R G+
Sbjct: 205 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQT 257
Query: 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD-----IRKMSSNASCNLGFRSYEWDYR 366
L GH + + R DG+ + S D+ +KLW+ ++ ++ ++S G
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG--------- 308
Query: 367 WMDYPPQARDLKHPCD-----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415
+ + P + + D Q + T GHS ++ FSP T I +
Sbjct: 309 -VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS--SSVWGVAFSPDGQT----IAS 361
Query: 416 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471
S D V +++ +G+ + L H+S VR ++ P + S+S D V W G
Sbjct: 362 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 28/257 (10%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S ++ + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 112
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
I S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 113 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 345 -----IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLI 398
++ ++ ++S G + + P + + D++V + + L +
Sbjct: 168 RNGQLLQTLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 399 RCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 454
H S V +S + I + S D V +++ +G+ + L H+S V ++ P
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 455 LVSSSWDGDVVRWEFPG 471
+ S+S D V W G
Sbjct: 277 IASASDDKTVKLWNRNG 293
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 28/213 (13%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDDQTIASASDDK 448
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S + + FS DG+ + + S D +
Sbjct: 449 TVKLWNRNGQLLQTLT-----------------GHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311
+++ L + H+S V V F + G I S SDD K+W+R G+
Sbjct: 492 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQT 544
Query: 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
L GH + + DG+ + S D+ +KLW+
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323
R+ AH+S V V F + G I S SDD K+W+R G+ L GH + +
Sbjct: 11 RLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVA 64
Query: 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 382
DG+ + S D+ +KLW+ N + R + + P + + D
Sbjct: 65 FSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 383 QSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438
++V + + L + H S V +S + I + S D V +++ +G+ + L
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 178
Query: 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471
H+S V ++ P + S+S D V W G
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 35/237 (14%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 366
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFS--------AADD----------------GGYS 227
V + + +++L + G+ FS A+DD G+S
Sbjct: 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
++ + FS D + + + S D + +++ L + H+S V V F + G I S
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIAS 484
Query: 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 485 ASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ FS DG+ L G+ D I ++D+E K+ + + H D+ ++ + SG + SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGS 184
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWD---- 344
D ++WD R + + +G+T + S GDG+Y+ + D+A+++WD
Sbjct: 185 GDRTVRIWDLRT-----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 345 --IRKMSSNASCNLGFRSYEWDYRW-----------MDYPPQARDLKHPCDQSVATYKGH 391
+ ++ S G + + + +D + +L++ ++S +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 392 SVLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443
H S + +YI +GS D V +D SG + L+ H + V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 35/228 (15%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG G + IRI+D+E + ++ + + P LV S
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V I D+ +G + I DG+ A G DG+ + AGS D +
Sbjct: 188 TVRIWDLRTG---QCSLTLSIEDGVTTVAVSPG-------------DGKYIAAGSLDRAV 231
Query: 252 YVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
V+D E L R+ H V +V F + G + SGS D K+W+ + N
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANN 290
Query: 305 K--------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
K G +GH + + + + + Y++S KD+ + WD
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---- 266
E+H LD ++ + +KFS DG L G + VY + L R+
Sbjct: 56 ELHKSLDHTSV--------VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 106
Query: 267 ------------AHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312
+ +SD + +VCF + G + +G++D L ++WD K +L
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIE----NRKIVMIL 161
Query: 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
GH + I +D G L+S D+ +++WD+R
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVY 186
Y + G V+G +RI+D+ G + L S+ VT ++SP D +++
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246
S+ V + D +G + + LD G+ ++S+ F+ DG+ +V+GS
Sbjct: 225 GSLDRAVRVWDSETGFLV---------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 247 SDDCIYVYDLE-ANKLS-----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294
D + +++L+ AN S + + H V +V ++ I SGS D
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-TQNDEYILSGSKDRGV 334
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGK-DQAIKLWDIRKM 348
WD++ G P +L GH + + S G + + G D ++W +K+
Sbjct: 335 LFWDKK----SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
Query: 349 SSN 351
+ N
Sbjct: 391 APN 393
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462
S +S K++ TG+ D + ++D+ + + V L+ H + + PS LVS S D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 463 DVVRWEF 469
V W+
Sbjct: 188 TVRIWDL 194
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 42/278 (15%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
IF FS +V+ S D I V+D E + HT V + F D SG L+ S S
Sbjct: 115 IFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349
D K+WD + + GH ++ + +G +++S +D+ IK+W+++
Sbjct: 170 ADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--- 222
Query: 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQS-----VATYKGHSVLRT---LIR 399
C F + ++ M P Q L C DQ+ VAT + + LR ++
Sbjct: 223 -TGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 400 C--------HFSPVYSTGQK---------YIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442
C + S +TG + ++ +GS D + ++D+ +G + L H +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 480
VR +H ++S + D + W++ N LN
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLN 377
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/270 (19%), Positives = 105/270 (38%), Gaps = 35/270 (12%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + + F G+ L + S+D I ++D + + + H +V++V H+
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ S S D K+W+ + G GH E + + DG + S DQ +++W
Sbjct: 208 V-SASRDKTIKMWEVQT----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQAR---------------------DLKHPCDQ 383
+ + C R + + + P++ L D+
Sbjct: 263 V----ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 384 SVATYKGHS--VLRTLI---RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438
++ + + L TL+ ++ +G K+I + + D + V+D + + L
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
H V +H + P +V+ S D V WE
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 22/221 (9%)
Query: 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194
+G V+ + I++++V+ G+ ++ W + P+Q + AS S
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWV---RMVRPNQDGTLIASCSNDQT 257
Query: 195 IVDVGSGTMESLANVTEIHDGLD-FSAADDGGYS-----FGIFSLKFSTDGRELVAGSSD 248
+ T E A + E ++ S A + YS G + K G L++GS D
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD---RRCLNVK 305
I ++D+ + ++ H + V V F G I S +DD +VWD +RC+
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSCADDKTLRVWDYKNKRCMKT- 375
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
L H +T +D Y+++ DQ +K+W+ R
Sbjct: 376 ------LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456
+ R F PV+S + + S D+ + V+D +G+ LK HT V+D S+ S +L
Sbjct: 111 VTRVIFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 457 SSSWDGDVVRWEFPG 471
S S D + W+F G
Sbjct: 167 SCSADMTIKLWDFQG 181
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
PVD A+ FS D G ++ I+ VE G +K+ + + + S
Sbjct: 122 PVD-----AWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYS 173
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PD ++L ++ I++I D+ +G L + E G++ I SL FS D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSPD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
+ LV S D I +YD++ L+ + H S V V F + H + S S D KVWD
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWD 276
Query: 299 ---RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R C++ H + + + G+G ++S G DQ I ++D
Sbjct: 277 VGTRTCVH-------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 24/200 (12%)
Query: 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205
+ IR++D+E G +I+ WT+ + SPD ++L + V+I V SG E
Sbjct: 102 AHIRLWDLENGKQIKSIDAGPVDAWTL---AFSPDSQYLATGTHVGKVNIFGVESGKKE- 157
Query: 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265
+S G + I S+ +S DG+ L +G+ D I ++D+ KL +
Sbjct: 158 ------------YSLDTRGKF---ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
H + ++ F +S L+ + SDD K++D + N+ AG L GH + +
Sbjct: 203 EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSGHASWVLNVAFC 257
Query: 326 GDGRYLISNGKDQAIKLWDI 345
D + +S+ D+++K+WD+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDV 277
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 267 AHTSDVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323
AH + +V +G E+ + +GS D+L KVW R + + + L GH G+ +D
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--LEGHQLGVVSVD 87
Query: 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383
S+ D I+LWD+ S + G D + + P ++ L
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV 143
Query: 384 S------VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437
V + K L T + S YS KY+ +G+ D + ++D+ +G+ + L+
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 438 YHTSPVRDCSWHPSQPMLVSSSWDG 462
H P+R ++ P +LV++S DG
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDG 228
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 152 DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE 211
D+ + WK + + L L+W SL Q +V +S + I S ++++ + +
Sbjct: 58 DLVKVWKWRDERL--DLQW-----SLEGHQLGVVSVDISHTLPIA--ASSSLDAHIRLWD 108
Query: 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271
+ +G + D G ++L FS D + L G+ + ++ +E+ K +
Sbjct: 109 LENGKQIKSIDAG--PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331
+ ++ + + G + SG+ D + ++D GK L GH I + D + L
Sbjct: 167 ILSIAYSPD-GKYLASGAIDGIINIFDIAT----GKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 332 ISNGKDQAIKLWDIR 346
++ D IK++D++
Sbjct: 222 VTASDDGYIKIYDVQ 236
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 57/259 (22%)
Query: 198 VGSGTMESLANVTEIHDG-LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256
V +G+++ L V + D LD + +G + G+ S+ S + S D I ++DL
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109
Query: 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316
E K I A D T+ F +S +L + ++ KV N+ G +G L
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYL---ATGTHVGKV------NIFGVESGKKEYSL 160
Query: 317 EG----ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372
+ I I DG+YL S D I ++DI A+ L
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDI------ATGKL---------------- 198
Query: 373 QARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431
+ T +GH++ +R+L FSP + + T S D + +YD+
Sbjct: 199 ------------LHTLEGHAMPIRSLT---FSP----DSQLLVTASDDGYIKIYDVQHAN 239
Query: 432 QVAALKYHTSPVRDCSWHP 450
L H S V + ++ P
Sbjct: 240 LAGTLSGHASWVLNVAFCP 258
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 651 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 276 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 335 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 385
D ++LWD+R + S N+ F S E PP+ ++ C D+ +
Sbjct: 762 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 814
Query: 386 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428
K +L T+ C FSP CV ++++
Sbjct: 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 870
Query: 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
S +VA + H S V + P +++S D + WE
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322
L + HT V CF + + G+D L +V+ G+ + H + +
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 663
Query: 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382
D Y+ + D+ +K+WD +A+ L
Sbjct: 664 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 691
Query: 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442
V TY HS + CHF+ + + TGS+D + ++DL E + HT+
Sbjct: 692 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 491
V C + P +L S S DG + W+ E +K I ++F+L
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 788
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD L S + + DV S NV F +++D +
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF-----FLSSEDPPEDVEV 799
Query: 231 F--SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIY 286
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 800 IVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAV 856
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +
Sbjct: 857 IALSQYCVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Query: 347 KMSSNASCNL 356
K+ N++ L
Sbjct: 913 KVCKNSAIVL 922
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1064
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1065 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1108
Query: 251 --IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
I+ +DL + L+ H V F + G L+ +G D+ ++W+
Sbjct: 1109 AKIWSFDLLSPLHELK--GHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1155
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T Y + FS DG + ++++ E G K+ DI K+ V + S D +
Sbjct: 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-DI--KAHEDEVLCCAFSSDDSY 671
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
+ S V I D +G + +H D+ ++ L
Sbjct: 672 IATCSADKKVKIWDSATGKL--------VH------TYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD----- 298
GS+D + ++DL + + HT+ VN F + L+ S S D ++WD
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSAN 776
Query: 299 -RRCLNVK 305
R+ +NVK
Sbjct: 777 ERKSINVK 784
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
G +L+AG + Y+ + + + L + + V FGDE G + + ++ +
Sbjct: 945 GLQLIAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPN 992
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R + +GV GH + + I DG+ LIS+ +D I++W+
Sbjct: 993 NRVFS-----SGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1191
Query: 183 HLVYA 187
LV A
Sbjct: 1192 TLVSA 1196
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 658 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 276 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 335 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 385
D ++LWD+R + S N+ F S E PP+ ++ C D+ +
Sbjct: 769 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 821
Query: 386 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428
K +L T+ C FSP CV ++++
Sbjct: 822 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 877
Query: 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468
S +VA + H S V + P +++S D + WE
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322
L + HT V CF + + G+D L +V+ G+ + H + +
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 670
Query: 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382
D Y+ + D+ +K+WD +A+ L
Sbjct: 671 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 698
Query: 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442
V TY HS + CHF+ + + TGS+D + ++DL E + HT+
Sbjct: 699 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 491
V C + P +L S S DG + W+ E +K I ++F+L
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 795
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD L S + + DV S NV F +++D +
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF-----FLSSEDPPEDVEV 806
Query: 231 F--SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIY 286
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 807 IVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAV 863
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +
Sbjct: 864 IALSQYCVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Query: 347 KMSSNASCNL 356
K+ N++ L
Sbjct: 920 KVCKNSAIVL 929
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1071
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1072 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1115
Query: 251 --IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
I+ +DL + L+ H V F + G L+ +G D+ ++W+
Sbjct: 1116 AKIWSFDLLSPLHELK--GHNGCVRCSAFSLD-GILLATGDDNGEIRIWN 1162
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T Y + FS DG + ++++ E G K+ DI K+ V + S D +
Sbjct: 622 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-DI--KAHEDEVLCCAFSSDDSY 678
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
+ S V I D +G + +H D+ ++ L
Sbjct: 679 IATCSADKKVKIWDSATGKL--------VH------TYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD----- 298
GS+D + ++DL + + HT+ VN F + L+ S S D ++WD
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSAN 783
Query: 299 -RRCLNVK 305
R+ +NVK
Sbjct: 784 ERKSINVK 791
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
G +L+AG + Y+ + + + L + + V FGDE G + + ++ +
Sbjct: 952 GLQLIAGKTGQIDYLPEAQVSCCCL-----SPHLEYVAFGDEDGAI-------KIIELPN 999
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
R + +GV GH + + I DG+ LIS+ +D I++W+
Sbjct: 1000 NRVFS-----SGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1198
Query: 183 HLVYA 187
LV A
Sbjct: 1199 TLVSA 1203
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 43/257 (16%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
++ G+ D I VYD K L++ H V + + G ++ SGS D +VWD +
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 302 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359
KG V GH + +D + +Y+++ +D + +W + K SS
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 360 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 401
E DY + + P+ + SV T GH + TLI +C
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 303
Query: 402 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ S +Y +K + S D+ + ++DL +GE + L+ HT+ V S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RLS 361
Query: 452 QPMLVSSSWDGDVVRWE 468
LVS++ DG + W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV--TDTSLSPDQRHLVYASMSP 191
A G + V+G +R++D+++G + + TV D + +++V S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 192 IVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIFS------LKFSTDGRELVA 244
+H+ + + S+ + E HD L F ++ Y G+ S G +V+
Sbjct: 228 TLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
GS D+ + V+D+ K + HT + + + E I S S D ++WD
Sbjct: 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLE---- 340
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
G+ L GH + + R ++L+S D +I+ WD
Sbjct: 341 NGELMYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWD 378
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 395 RTLIRCHFSPVYSTGQ---KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
RT +R H + V + Q Y+ TG+ D + VYD ++ + + L H V +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 452 QPMLVSSSWDGDVVRWEF 469
+LVS S D V W+
Sbjct: 173 GGILVSGSTDRTVRVWDI 190
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
++ G+ D I VYD K L++ H V + + G ++ SGS D +VWD +
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 302 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359
KG V GH + +D + +Y+++ +D + +W + K SS
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 360 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 401
E DY + + P+ + SV T GH + TLI +C
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCL 303
Query: 402 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ S +Y +K + S D+ + ++DL +GE L+ HT+ V S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL--RLS 361
Query: 452 QPMLVSSSWDGDVVRWE 468
LVS++ DG + W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV--TDTSLSPDQRHLVYASMSP 191
A G + V+G +R++D+++G + + TV D + +++V S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 192 IVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGYSFGIFS------LKFSTDGRELVA 244
+H+ + + S+ + E HD L F ++ Y G+ S G +V+
Sbjct: 228 TLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 304
GS D+ + V+D+ K + HT + + + E I S S D ++WD
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLE---- 340
Query: 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
G+ L GH + + R ++L+S D +I+ WD
Sbjct: 341 NGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWD 378
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 395 RTLIRCHFSPVYSTGQ---KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
RT +R H + V + Q Y+ TG+ D + VYD ++ + + L H V +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 452 QPMLVSSSWDGDVVRWEF 469
+LVS S D V W+
Sbjct: 173 GGILVSGSTDRTVRVWDI 190
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 453 PMLVSSSWDGDVVRWE 468
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 373 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 419
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 198 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 238
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 294
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 295 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 344 D 344
+
Sbjct: 351 N 351
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 256
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 257 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 347 K 347
K
Sbjct: 312 K 312
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 169 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 225 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 394 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 281 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 453 PMLVSSSWDGDVVRWE 468
+ + SWD + W
Sbjct: 336 MAVATGSWDSFLKIWN 351
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 373 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 419
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 28 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 87
Query: 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ ++D + +V A+ +S V C++ PS
Sbjct: 88 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 453 PMLVSSSWDGDVVRWE 468
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 373 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 419
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 453 PMLVSSSWDGDVVRWE 468
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 373 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 419
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
L+ +G DD C VWD +K AGVL GH ++ + DG + + D +K+W
Sbjct: 284 LLLAGYDDFNCNVWDA----LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 344 D 344
+
Sbjct: 340 N 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 347 K 347
K
Sbjct: 301 K 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 285
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQ------------ARDLKHPCDQSVATYKGHSV 393
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 394 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 453 PMLVSSSWDGDVVRWE 468
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 373 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 419
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 448 WHPSQPMLVSSSWDGDVVRWEFPG 471
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 115
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 116 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 171 MVKAWNLNQFQIEA 184
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 104
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 85 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 137
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 448 WHPSQPMLVSSSWDGDVVRWEFPG 471
P ++ S+ DG+++ W
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAA 221
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 40/253 (15%)
Query: 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321
++++ H + V + E G L++S S D+ VW ++ G+ G L GH I
Sbjct: 25 AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------- 374
ID +Y ++ D +IKLWD+ SN C ++S + +++ P
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDV----SNGQCVATWKS-PVPVKRVEFSPCGNYFLAIL 134
Query: 375 -RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY----------------STGQKYIYTGS 417
+K+P ++ + S L + P++ ST KYI G
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Query: 418 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPG 471
D + YD+ + E V ++ H + D + P ++SS D DV +
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254
Query: 472 NGEAAPPLNKKRI 484
E PLN I
Sbjct: 255 KYETDCPLNTAVI 267
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHL 184
A V+ +S G +AG + +I YDV ++ D+ KS ++D SPD +
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSPDLTYF 233
Query: 185 VYASMSPIVHIVDVGS 200
+ +S +VDV +
Sbjct: 234 ITSSRDTNSFLVDVST 249
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 31/257 (12%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDESGHL 284
+ + ++ G + G D+ VY L +K + +A ++ + C S
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKL 342
I + S D C +WD G+ GH + +D G +S G D+ +
Sbjct: 169 ILTASGDGTCALWDVE----SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKG 390
WD+R + C F ++E D + Y P R D+ VA Y
Sbjct: 225 WDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450
S+ I S +S + ++ G +D + V+D++ G +V+ L H + V P
Sbjct: 281 ESI----IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
Query: 451 SQPMLVSSSWDGDVVRW 467
S SWD + W
Sbjct: 337 DGTAFCSGSWDHTLRVW 353
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 91/258 (35%), Gaps = 49/258 (18%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 283
G+ + + + D R +V+ S D + V+D NK + T + C SG
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM--ACAYAPSGC 119
Query: 284 LIYSGSDDNLCKVW-----DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338
I G DN C V+ + K K + +L +F +S D + L ++G D
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASG-DG 176
Query: 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398
LWD+ S F + D +D P
Sbjct: 177 TCALWDVESGQLLQS----FHGHGADVLCLDLAPS------------------------- 207
Query: 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 458
TG ++ +G D V+D+ SG+ V A + H S V ++PS S
Sbjct: 208 --------ETGNTFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 258
Query: 459 SWDGDVVRWEFPGNGEAA 476
S D ++ + E A
Sbjct: 259 SDDATCRLYDLRADREVA 276
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIY 286
FG S+ FS GR L AG +D I V+D L+ +++S+ + H + V+T+ + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 287 SGSDDNLCKVW 297
SGS D+ +VW
Sbjct: 343 SGSWDHTLRVW 353
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 448 WHPSQPMLVSSSWDGDVVRWEFPG 471
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 22/202 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 448 WHPSQPMLVSSSWDGDVVRWEF 469
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D + K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 22/202 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 448 WHPSQPMLVSSSWDGDVVRWEF 469
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNL 225
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-DKKASX 121
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 338
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 339 AIKLWDIRKMSSNA 352
+K W++ + A
Sbjct: 177 XVKAWNLNQFQIEA 190
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGI 230
V D +L+ D + + AS + + DV +G T + G+ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----------------GHKSDV 110
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GDESGHLI 285
S+ +++GS D I V+ ++ L+ +L H V+ V D+ I
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345
S +D K W+ ++ +GH I + + DG + S GKD I LW++
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 22/202 (10%)
Query: 283 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 387
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC---LAT 143
Query: 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 448 WHPSQPMLVSSSWDGDVVRWEF 469
P ++ S+ DG++ W
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNL 225
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 284 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 343 WDIRK 347
WD+ +
Sbjct: 219 WDLNE 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 121 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 341 KLWDIRKMSSNASCNL 356
K+W++ A+C L
Sbjct: 175 KVWNL------ANCKL 184
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 22/225 (9%)
Query: 260 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHL 316
+++LR + H V + + +I S S D +W R G P L GH
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--------CNLGFRSYEWDYRWM 368
++ + DG++ +S D ++LWD+ ++ ++ F S D R +
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS---DNRQI 120
Query: 369 DYPPQARDLKHPCDQSVATY----KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424
+ + +K V Y + HS + +R FSP ++ I + D V V
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSP--NSSNPIIVSCGWDKLVKV 176
Query: 425 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
++L + + HT + + P + S DG + W+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 284 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 343 WDIRK 347
WD+ +
Sbjct: 242 WDLNE 246
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 144 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 341 KLWDIRKMSSNASCNL 356
K+W++ A+C L
Sbjct: 198 KVWNL------ANCKL 207
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 22/234 (9%)
Query: 251 IYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGK 307
+Y + +++LR + H V + + +I S S D +W R G
Sbjct: 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI 77
Query: 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--------CNLGFR 359
P L GH ++ + DG++ +S D ++LWD+ ++ ++ F
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 360 SYEWDYRWMDYPPQARDLKHPCDQSVATY----KGHSVLRTLIRCHFSPVYSTGQKYIYT 415
S D R + + + +K V Y + HS + +R FSP ++ I +
Sbjct: 138 S---DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSP--NSSNPIIVS 190
Query: 416 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
D V V++L + + HT + + P + S DG + W+
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S +G V+ S D + +++L+ + + L HT DV +V F ++ +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 340
+ SG DN +VW NVKG+ L H + ++ + D ++S G D +
Sbjct: 125 V-SGGRDNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 341 KLWDI 345
K+WD+
Sbjct: 179 KVWDL 183
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365
G P L GH ++ + +G + +S D +++LW+++ N C F + D
Sbjct: 57 GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ----NGQCQYKFLGHTKDV 112
Query: 366 RWMDYPPQAR--------------DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411
+ + P R ++K C ++ + H+ + +R FSP S
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL-SRGAHTDWVSCVR--FSP--SLDAP 167
Query: 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVR 466
I +G D+ V V+DL +G V LK HT+ V + P + SS DG D+ +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 467 WEFPGNGEAAPPLNKKRIRRRQFYL 491
E A P+N+ ++++
Sbjct: 228 GEALSEMAAGAPINQICFSPNRYWM 252
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 127 AYVSQ--FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
A+VS S +G+ V+ +R+++++ G + Q L + V + SPD R +
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNG-QCQYKFLGHTK--DVLSVAFSPDNRQI 124
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGREL 242
V + + +V M +L+ G ++ + ++FS D +
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSR---------------GAHTDWVSCVRFSPSLDAPVI 169
Query: 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
V+G D+ + V+DL +L + HT+ V +V + G L S D + ++WD
Sbjct: 170 VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWD 224
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242
++V ++ V++ + SG++ +LA E S + S+K+S DG L
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDE---------------STYVASVKWSHDGSFL 149
Query: 243 VAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
G + + +YD+E+ + LR +A H + V + + + H++ SGS D R
Sbjct: 150 SVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRI 205
Query: 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
N + G L GH + + R DG L S G D +++WD R
Sbjct: 206 ANHQ---IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVTDT 175
D++T A V ++S DGS G + IYDVE K++ L W
Sbjct: 131 TDESTYVASV-KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----- 184
Query: 176 SLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
RH++ + S S +H DV +AN G+S + L
Sbjct: 185 -----NRHVLSSGSRSGAIHHHDV------RIAN---------HQIGTLQGHSSEVCGLA 224
Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288
+ +DG +L +G +D+ + ++D ++ H + V V + +L+ +G
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 71/264 (26%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181
+T+ Y Q+ D V+G + + I+I+D + K IL T + L D+
Sbjct: 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWD--KNTLECKRILTGH---TGSVLCLQYDE 183
Query: 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241
R ++ S V + DV +G M + T IH + + L+F+
Sbjct: 184 RVIITGSSDSTVRVWDVNTGEMLN----TLIH------------HCEAVLHLRFNNG--M 225
Query: 242 LVAGSSDDCIYVYDLEA-NKLSLR--ILAHTSDVNTVCFGDE------------------ 280
+V S D I V+D+ + ++LR ++ H + VN V F D+
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 281 -------SGH------------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321
+GH L+ SGS DN ++WD C G VL GH E +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC----GACLRVLEGHEELVRC 341
Query: 322 IDSRGDGRYLISNGKDQAIKLWDI 345
I R D + ++S D IK+WD+
Sbjct: 342 I--RFDNKRIVSGAYDGKIKVWDL 363
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
++ I TGS DS V V+D+ +GE + L +H V ++ M+V+ S D + W+
Sbjct: 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM 240
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SG 288
+ FSTD R + S D + +++ +L H+ VN F + S HL+ +G
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348
S D K+WD LN K + + GH + D + L S D +KLWD
Sbjct: 726 SSDCFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 349 SSNASCNL 356
+ S N+
Sbjct: 782 NERKSINV 789
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 49/229 (21%)
Query: 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322
L + HT V CF ++ + G+D L +V+ G+ + H + +
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTL-QVFKAE----TGEKLLEIKAHEDEVLCC 669
Query: 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382
D R++ + D+ +K+W+ M+
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWN--SMTG-------------------------------- 695
Query: 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442
+ V TY HS + CHF+ S+ + TGS D + ++DL E + HT+
Sbjct: 696 ELVHTYDEHS--EQVNCCHFTN--SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNS 751
Query: 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 491
V C + P +L S S DG + W+ E +K I +QF+L
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDATSANE------RKSINVKQFFL 794
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 23/305 (7%)
Query: 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230
+V SPD + L S + + D S NV + L+ D +
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQED---MEVIV 807
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSG 288
+S DG ++ + + I+++D+ + L I HT +T+ + D S HL
Sbjct: 808 KCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEI--HTGHHSTIQYCDFSPQNHLAVVA 864
Query: 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348
++W+ + + K A GHL + + DG +++ DQ I+LW+ +K+
Sbjct: 865 LSQYCVELWNT---DSRSKVADC-RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Query: 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIR---CHFSP 404
N++ L E D + + + H Q + G T + C SP
Sbjct: 921 CKNSAVML---KQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP 977
Query: 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464
+YI G + + + +LV+ + H V + + L+SSS D ++
Sbjct: 978 ----HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEI 1033
Query: 465 VRWEF 469
W +
Sbjct: 1034 QVWNW 1038
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183
T Y + FS DG + ++++ E G K+ + K+ V + S D R
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL---LEIKAHEDEVLCCAFSTDDRF 677
Query: 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243
+ S+ V I + +G + +H D+ S+ L
Sbjct: 678 IATCSVDKKVKIWNSMTGEL--------VH------TYDEHSEQVNCCHFTNSSHHLLLA 723
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD----- 298
GSSD + ++DL + + HT+ VN F + L+ S S D K+WD
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATSAN 782
Query: 299 -RRCLNVK 305
R+ +NVK
Sbjct: 783 ERKSINVK 790
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 353
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 257 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413
+ + +W P ++++ G T R H + G++
Sbjct: 316 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 359
Query: 414 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 472
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 360 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 353
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 259 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413
+ + +W P ++++ G T R H + G++
Sbjct: 318 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 361
Query: 414 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 472
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 362 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 24/233 (10%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLD----FSAADDGGYSFGI---FS 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 250 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 309
Query: 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR--GDGRYLISNGKDQAIKL 342
+ WD R P G + + EG T I++ G +S+G D +IKL
Sbjct: 310 GMLAQWDLRSPEC---PVGEFLIN-EG-TPINNVYFAAGALFVSSGFDTSIKL 357
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 165
Query: 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359
+ G L+GH +T I GR ++S D I+LW+ C G
Sbjct: 166 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTT 212
Query: 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYT 415
+ ++ ++ H S+A + G R L S + T KY+
Sbjct: 213 IHTFN---------RKENPHDGVNSIALFVGTD--RQLHEISTSKKNNLEFGTYGKYVIA 261
Query: 416 GSHDSCVYVYDLVSGEQVAAL 436
G + V+++ S EQ L
Sbjct: 262 GHVSGVITVHNVFSKEQTIQL 282
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLD----FSAADDGGYSFGI---FS 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 342
+ WD R P G + + EG + G +S+G D +IKL
Sbjct: 313 GMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 360
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 168
Query: 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359
+ G L+GH +T I GR ++S D I+LW+ C G
Sbjct: 169 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTT 215
Query: 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYT 415
+ ++ ++ H S+A + G R L S + T KY+
Sbjct: 216 IHTFN---------RKENPHDGVNSIALFVGTD--RQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 416 GSHDSCVYVYDLVSGEQVAAL 436
G + V+++ S EQ L
Sbjct: 265 GHVSGVITVHNVFSKEQTIQL 285
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ ++SL+F DG +V+GS D I V+D+E + H S + + D ++
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 331
Query: 285 IYSGSDDNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
+ SG+ D+ K+WD + CL P H +T + + + ++I++ D +K
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCL--QFNKNFVITSSDDGTVK 385
Query: 342 LWDIR 346
LWD++
Sbjct: 386 LWDLK 390
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD- 298
+ +V+GS D + V+D+E + ++ H + V V + G + SG+ D + KVWD
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDP 266
Query: 299 --RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD------IRKMSS 350
CL+ L GH + + + DG +++S D +I++WD I ++
Sbjct: 267 ETETCLHT-------LQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410
+ S G + + + Q + T +G + ++ + C +
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC-----LQFNK 372
Query: 411 KYIYTGSHDSCVYVYDLVSGEQVAAL 436
++ T S D V ++DL +GE + L
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 183 HLVYASMSPI----VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
H +Y S + +H V SG+ ++ V +I G G+ + +++ D
Sbjct: 193 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL--MGHVAAVRCVQY--D 248
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
GR +V+G+ D + V+D E + HT+ V ++ F G + SGS D +VWD
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWD 305
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
G L GH + ++ + + L+S D +K+WDI+
Sbjct: 306 VE----TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 347
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I L+F G +V+GS D+ + V+ K ++ HT V + D ++I SGS
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGS 176
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349
D KVW+ G+ L GH + + + ++S +D +++WDI
Sbjct: 177 TDRTLKVWNAE----TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI---- 226
Query: 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY--KGHSVLRTLIRCHFSPVYS 407
C + R + Y + R + D V + + + L TL + H + VYS
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYS 284
Query: 408 T--GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465
++ +GS D+ + V+D+ +G + L H S +LVS + D V
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVK 342
Query: 466 RWEF 469
W+
Sbjct: 343 IWDI 346
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 353
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 261 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413
+ + +W P ++++ G T R H + G++
Sbjct: 320 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 363
Query: 414 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 472
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 364 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 18/229 (7%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLS 178
+TT++ +S DG+ V G + ++R+++ + L L R + +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-------KTGALLNVLNFHRAPIVSVKWN 158
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
D H++ + + + +V SGT+ + E + G S G+ +++ D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298
+ ++ G I+VY + + +++ H ++ + F D + L+ S SDD ++W
Sbjct: 218 DKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWH 275
Query: 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347
G GH + I GD + +IS D +++LW +++
Sbjct: 276 GG----NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 48/231 (20%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
LA + D N++ G E+G L R N G VL H I +
Sbjct: 114 LAWSHDGNSIVTGVENGEL---------------RLWNKTGALLNVLNFHRAPIVSVKWN 158
Query: 326 GDGRYLISNGKDQAIKLWDIRK--------------MSSNASCNLGFRSYEWDYRWMD-- 369
DG ++IS + LW++ S NA + G S D W+D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218
Query: 370 ---YP-PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSC 421
P P+ + + T K + H P+ ++ K + + S D
Sbjct: 219 KFVIPGPKGAIFVYQITEKTPTGK--------LIGHHGPISVLEFNDTNKLLLSASDDGT 270
Query: 422 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472
+ ++ +G H+ + SW ++S S DG V W N
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRLWSLKQN 320
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 394 LRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDL-VSGEQ---VAALKYHTSPVRD 445
L +I H + V +S Y+ T S D V++++ SGE+ ++ L+ H+ V+
Sbjct: 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 446 CSWHPSQPMLVSSSWDGDVVRW-EFPGNGEAAPPLN 480
WHPS+ +L SSS+D V W ++ + E LN
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 226 YSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA---HTSDVNTVCFGDE 280
+S GI + + +LV+ DD I V D A+K ++R +A HTS
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS---------- 71
Query: 281 SGHLIYSGSDDNLCKVWDRRC---LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337
L+ +GS D+ +W + + ++ GH + + DG YL + +D
Sbjct: 72 ---LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYR---WMDYPPQARDLKHPCDQSVATYKGHS-- 392
+++ +W+ + C + + D + W +P +A D +V +K +
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDD 186
Query: 393 -VLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVY 425
++ H V+S+ G + +GS DS V V+
Sbjct: 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 57/299 (19%)
Query: 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYV 253
D G T S ++ D AD + ++S S T + G+ + +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLNV----K 305
DL++ S + H ++ V + +++ + S D+ K+WD R CL
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 306 GKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358
GK + + G + G+ F DG +L++ G D ++LW+ SSN L
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWN----SSNGENTL-- 281
Query: 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418
++Y + K KG L+ + C S ++++ +
Sbjct: 282 ---------VNYGKVCNNSK----------KG---LKFTVSCGCS------SEFVFV-PY 312
Query: 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477
S + VY + SGEQ+ LK H V C + + L S S D +++ W P E P
Sbjct: 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW-VPSLYEPVP 370
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 23/192 (11%)
Query: 299 RRCLNVK-GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS------S 350
RR L ++ K V H GI +D +GRY++S G D I L+D+ S
Sbjct: 25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC 84
Query: 351 NASCNLG----------FRSYEW---DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397
A C++G + +W D + LK ++ T + T+
Sbjct: 85 KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV 144
Query: 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLV 456
H SPV ST + G+ V + DL SG L+ H + SW P +L
Sbjct: 145 YSHHMSPV-STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 457 SSSWDGDVVRWE 468
++S D V W+
Sbjct: 204 TASADSRVKLWD 215
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIY 286
I S K DG L+ G + ++DL A + RI A + C+ + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346
S D VWD + + GH +G + ID DG L + G D ++ WD+R
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ----FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 347 K 347
+
Sbjct: 214 E 214
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 47/234 (20%)
Query: 242 LVAGSSDDCIYVYDLEANKLSL-----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+V+ S D I ++ L + + R+ H+ V V + G SGS D ++
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRL 456
Query: 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356
WD G +GH + + + D R ++S +D+ IKLW+ L
Sbjct: 457 WDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----------TL 502
Query: 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYT 415
G C +++ +G R + C FSP +T Q I +
Sbjct: 503 G----------------------ECKYTIS--EGGEGHRDWVSCVRFSP--NTLQPTIVS 536
Query: 416 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
S D V V++L + + + L HT V + P + S DG V+ W+
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDES 281
G++ + S+ FS D R++V+ S D I +++ +S H V+ V F +
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 282 GH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340
I S S D KVW+ ++ L GH ++ + DG S GKD +
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRS----TLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 341 KLWDI 345
LWD+
Sbjct: 586 LLWDL 590
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 41/228 (17%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLV 185
S+DG ++G ++R++D+ G + KD+L+ + S D R +V
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS---------VAFSLDNRQIV 488
Query: 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LV 243
AS + + + +++ E G+ + ++FS + + +V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGE-------------GHRDWVSCVRFSPNTLQPTIV 535
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303
+ S D + V++L KL + HT V+TV + G L SG D + +WD
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDL---- 590
Query: 304 VKGKPAGVLMGHLEGITFIDSR--GDGRYLISNGKDQAIKLWDIRKMS 349
G + LE + I + RY + + IK+WD+ S
Sbjct: 591 ----AEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL A + R + HT DV +V F ++ +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 285 IYSGSDDNLCKVWD 298
+ S S D K+W+
Sbjct: 488 V-SASRDRTIKLWN 500
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 307 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 42/244 (17%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG------DESGHLIY-----SGSD 290
L++ S D I ++D+ A +++ D T+ G D S HL++ S +D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVV----DAKTIFTGHTAVVEDVSWHLLHESLFGSVAD 248
Query: 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMS 349
D +WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 249 DQKLMIWDTRSNNT-SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 307
Query: 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409
+ + +W P ++++ G T R + + G
Sbjct: 308 LKLHSFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLNVWDLSKIG 351
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WE 468
++ + D + + G HT+ + D SW+P++P ++ S + ++++ W+
Sbjct: 352 EEQSPEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 469 FPGN 472
N
Sbjct: 404 MAEN 407
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 40/225 (17%)
Query: 281 SGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLI-SNGK 336
SGHL+ S SDD+ +WD +GK + GH + + L S
Sbjct: 192 SGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL--KHPCDQSVA-------- 386
DQ + +WD R +++ +L ++ + + + P + + D++VA
Sbjct: 251 DQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
Query: 387 ----TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKY--- 438
T++ H + + H+SP T + + D + V+DL GE+ +A
Sbjct: 310 LKLHTFESHK--DEIFQVHWSPHNET---ILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 439 ----------HTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 472
HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 246 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 303 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 39/210 (18%)
Query: 281 SGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLI-SNGK 336
SGHL+ S SDD+ +WD +GK + GH + + L S
Sbjct: 192 SGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL--KHPCDQSVA-------- 386
DQ + +WD R +++ +L ++ + + + P + + D++VA
Sbjct: 251 DQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 309
Query: 387 ----TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKY--- 438
T++ H + + H+SP T + + D + V+DL GE+ +A
Sbjct: 310 LKLHTFESHK--DEIFQVHWSPHNET---ILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 439 ----------HTSPVRDCSWHPSQPMLVSS 458
HT+ + D SW+P++P ++ S
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICS 394
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 35/224 (15%)
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------LRILAHTSDVNTVCFGDESGH 283
FS K + D L++GS D + ++ L + + + H V+ + E+
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
I S D L ++WD R G +GH + + D R ++S G ++ IKLW
Sbjct: 91 AISSSWDKTL-RLWDLRT----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 344 DIRKMSSNASCNLGFRSYEWDYRWMD---YPP--QARDLKHP---------CDQSVATYK 389
+I C E W+ Y P ++ + P D + +
Sbjct: 146 NIL-----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 390 GHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVS 429
+ +R + H S V S KYI TG D + ++D+++
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-------ALKYHTS 441
+GHS T I FS + + +GS D V ++ L EQ AL H
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 442 PVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
V D + +SSSWD + W+
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDL 105
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGD--E 280
G+ ++S+ FS D R++++ ++ I ++++ E S H+ V+ V + +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 281 SGHLIYSGSDDNLCKVWDRR--CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 338
S + + + WD R N + H + + +G+Y+ + GKD+
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 339 AIKLWDIRKMS 349
+ +WDI ++
Sbjct: 236 KLLIWDILNLT 246
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 24/211 (11%)
Query: 279 DESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335
+E ++ SGS D +W + G P L GH ++ + + + IS+
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 336 KDQAIKLWDIRKMSSNASCNLGFRS------YEWDYRWMDYPPQARDLK-----HPCDQS 384
D+ ++LWD+R ++ +G +S + D R + R++K C S
Sbjct: 96 WDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS 154
Query: 385 VATYKGHSVLRTLIRCHFSPVYSTGQK------YIYTGSHDSCVYVYDLVSGEQVAALKY 438
A + HS + +R +SP+ + K Y + D + V++ + + K
Sbjct: 155 SAEKENHSDWVSCVR--YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA 211
Query: 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
H S V S P+ + + D ++ W+
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 352
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 470 PGN 472
N
Sbjct: 127 ENN 129
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 298 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 338
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 352
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 470 PGN 472
N
Sbjct: 127 ENN 129
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 298 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 338
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ ++ + G + V+GS D CI V+DL + AH + V V + S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 290 DDNLCKVWDRRC 301
+DN +WD RC
Sbjct: 190 EDNRILLWDTRC 201
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 352
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLPD----------------------------------KPY 200
Query: 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 470 PGN 472
N
Sbjct: 127 ENN 129
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 298
++ S D I ++D + + H S+V+ F + +I SGS+D K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST 259
Query: 299 ---RRCLNVKGKPAGVLMGHLEG-ITFIDSRGD-GRYLISNGKDQ 338
+ LNV + + + H G +I S D G ++S G D+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 352
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLPD----------------------------------KPY 200
Query: 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 470 PGN 472
N
Sbjct: 127 ENN 129
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 345 IRKMSSNASCNLGFR 359
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 298
++ S D I ++D + + H S+V+ F + +I SGS+D K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST 259
Query: 299 ---RRCLNVKGKPAGVLMGHLEG-ITFIDSRGD-GRYLISNGKDQ 338
+ LNV + + + H G +I S D G ++S G D+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 26/176 (14%)
Query: 298 DRRCLNVKGKPAGVLMGHLEG---ITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSN 351
D RC + PAG L+ G I + GD + ++S G + + RK++
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV-----RKVAW- 69
Query: 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411
+ C S +D + D + V T +GH ++ S ++
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDF-----ECVTTLEGH---ENEVK---SVAWAPSGN 118
Query: 412 YIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464
+ T S D V+V+++ ++ V+ L HT V+ WHPSQ +L S+S+D V
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 30/227 (13%)
Query: 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
SR + ++ G+L + +IRI+ E I K +L++ + TV + SP +L
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244
AS I E + + G+ + S+ ++ G L
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLE--------------GHENEVKSVAWAPSGNLLAT 122
Query: 245 GSSDDCIYVY--DLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---- 297
S D ++V+ D E + +L +HT DV V + S L+ S S D+ K++
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKLYREEE 181
Query: 298 -DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D C L GH + + G+ L S D+ +++W
Sbjct: 182 DDWVC-------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALKYHTSPVRDC 446
+GH RT+ + +SP Y+ + S D +C++ + E V L+ H + V+
Sbjct: 58 EGHQ--RTVRKVAWSPC----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV 111
Query: 447 SWHPSQPMLVSSSWDGDVVRWE 468
+W PS +L + S D V WE
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWE 133
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 110/299 (36%), Gaps = 57/299 (19%)
Query: 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285
+S +F L +S DG ++ + S+D I ++++ K+ I T D+ +I
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------IEDQQLGII 291
Query: 286 YSGSDDNLCKVWDRRCLNVKGKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341
++ L + +N G V GH + IT + S DG+ L S + I
Sbjct: 292 WT--KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 342 LWDIRKMSSN-------ASCNLGFR--------SYEWDYRWMDYP--------------- 371
WDI SN A+ G + + WD P
Sbjct: 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409
Query: 372 ----PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV--------YSTGQKYIYTGSHD 419
P + D +VA H + + + P+ S ++++ G D
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469
Query: 420 SCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476
S V+VY L SG V+ +K H + + ++ + LV++ V+ + N E A
Sbjct: 470 SKVHVYKL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301
+++GS D+ + +++ K HT V++V + + G L S D +++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPDGSLFASTGGDGTIVLYN--- 218
Query: 302 LNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354
V G GV + H + + DG + S D+ IK+W++ + +
Sbjct: 219 -GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 355 NLGFR 359
+G R
Sbjct: 278 PVGTR 282
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLI 285
I S+ FS +G LVA + Y + AN L HT+ V V + ++ L
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVRL- 551
Query: 286 YSGSDDNLCKVWDRR-----CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340
+GS DN VW+ + +KG A M + + +++ ++S G+D I
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHA---MSSVNSVIWLNET----TIVSAGQDSNI 604
Query: 341 KLWDI 345
K W++
Sbjct: 605 KFWNV 609
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 86/241 (35%), Gaps = 47/241 (19%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYSGSDDNLCK 295
L+ GS D ++D+ + + I HT+DV ++ + ++ SGS D +
Sbjct: 173 LITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355
+WD R + + GH I + DG+ + D +L+D+R
Sbjct: 232 LWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ----- 283
Query: 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415
+ Y + P D + P SVA +S + ++
Sbjct: 284 --LQVY-------NREPDRNDNELPIVTSVA-------------------FSISGRLLFA 315
Query: 416 GSHDSCVYVYDLVSGEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471
G + YV+D + E V L H + L + SWD ++ W F G
Sbjct: 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Query: 472 N 472
+
Sbjct: 376 H 376
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 32/192 (16%)
Query: 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA------------DDG 224
++ QR ++ S P H DV S ++ SL I D +
Sbjct: 187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH 246
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD--------VNTVC 276
G+ I S+KF DG+ GS D ++D+ L++ D V +V
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVA 305
Query: 277 FGDESGHLIYSGSDDNLCKVWD----RRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYL 331
F SG L+++G + C VWD LN+ G L EG I+ + DG L
Sbjct: 306 F-SISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----GTLQNSHEGRISCLGLSSDGSAL 359
Query: 332 ISNGKDQAIKLW 343
+ D+ +K+W
Sbjct: 360 CTGSWDKNLKIW 371
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 217
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 218 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ ++ +++ + S R SLS
Sbjct: 157 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRL-RNMTSHSAR----VGSLS 207
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 208 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 252
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 293 LCKVWD 298
++W+
Sbjct: 313 HIRIWN 318
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 327 DGRYLISNGKDQAIKLWDI------RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH- 379
+G YL ++LWD+ R M+S+ S +G S W+ + ++ + H
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-SARVG--SLSWNSYILSSGSRSGHIHHH 225
Query: 380 ---PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----Q 432
+ VAT GHS +R ++ +++ +G +D+ V V+ GE
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
Query: 433 VAALKYHTSPVRDCSWHPSQPMLVSS 458
+ H V+ +W P Q ++++
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLAT 305
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 206
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 207 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ ++ +++ + S R SLS
Sbjct: 146 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRL-RNMTSHSAR----VGSLS 196
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 197 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 241
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 293 LCKVWD 298
++W+
Sbjct: 302 HIRIWN 307
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 327 DGRYLISNGKDQAIKLWDI------RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH- 379
+G YL ++LWD+ R M+S+ S +G S W+ + ++ + H
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-SARVG--SLSWNSYILSSGSRSGHIHHH 214
Query: 380 ---PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----Q 432
+ VAT GHS +R ++ +++ +G +D+ V V+ GE
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
Query: 433 VAALKYHTSPVRDCSWHPSQPMLVSS 458
+ H V+ +W P Q ++++
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLAT 294
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 126
Query: 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343
D R V L GH + + + DGR+L S G D + +W
Sbjct: 127 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 66 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 116
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 117 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 161
Query: 239 GRELVAGSSDDCIYVYDL---EANKLSLRILA-HTSDVNTVCFGDESGHLIYS--GSDDN 292
GR L +G +D+ + V+ E + L+ H V V + +++ + G+ D
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 293 LCKVWD 298
++W+
Sbjct: 222 HIRIWN 227
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 317 EGITFIDSRGDGRYLISNGKDQAIKLWDI---RKMSSNASCNLGFRSYEWDYRWMDYPPQ 373
E I+ + +G YL ++LWD+ +++ + S + S W+ + +
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR 127
Query: 374 ARDLKH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429
+ + H + VAT GHS +R ++ +++ +G +D+ V V+
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAP 181
Query: 430 GE----QVAALKYHTSPVRDCSWHPSQPMLVSS 458
GE + H V+ +W P Q ++++
Sbjct: 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 397 LIRCHFSPVYSTG-----QKYIYTGSHDSCVYVYDLVSG-------EQVAALKYHTSPVR 444
L+ H +PV I +GS D V V+++ G E V L+ HT V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 445 DCSWHPS-QPMLVSSSWDGDVVRWEFPGNGEAA 476
+WHP+ Q +L+S+ D ++ W+ G G A
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDV-GTGAAV 167
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 321
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 322 IDSRGDGR-YLISNGKDQAIKLWDI 345
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 397 LIRCHFSPVYSTG-----QKYIYTGSHDSCVYVYDLVSG-------EQVAALKYHTSPVR 444
L+ H +PV I +GS D V V+++ G E V L+ HT V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 445 DCSWHPS-QPMLVSSSWDGDVVRWEFPGNGEAA 476
+WHP+ Q +L+S+ D ++ W+ G G A
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDV-GTGAAV 167
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 439 HTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP 477
HT+PV D +W P + ++ S S D V+ WE P G P
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 321
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 322 IDSRGDGR-YLISNGKDQAIKLWDI 345
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ +L +DG + V+G D + V+DL + AH+S+VN V + S
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 290 DDNLCKVWDRRCLNVKGKPA 309
+D +WD R K KPA
Sbjct: 202 EDGRILLWDTR----KPKPA 217
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 417 SHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGN 472
S+D V ++ +G Q+A H++ V W P + P+L+ +S DG V EF N
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
Query: 473 GEAAP 477
G +P
Sbjct: 134 GTTSP 138
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 442
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101
Query: 443 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 477
V W P + PML+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNV---ILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNV---ILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 225 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 282
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 220
Query: 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 341
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 221 SSRMVVTGDNVGNVI---LLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 342 LWDIRKMSSNAS 353
+WD+R++ AS
Sbjct: 278 IWDLRQVRGKAS 289
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 442
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 45 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 103
Query: 443 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 477
V W P + P+L+ +S DG V EF NG +P
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 442
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101
Query: 443 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 477
V W P + P+L+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSG 288
+ + +S DG ++ S D ++DL +N+ +++I H + V T+ + + + +G
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 289 SDDNLCKVWDRRCLN 303
S D K WD R N
Sbjct: 148 SWDKTLKFWDTRSSN 162
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 410 QKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRW 467
Q + TG D + ++D+ G V+ LK H + + + +HPS P L + S DG + W
Sbjct: 249 QHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 468 E 468
+
Sbjct: 309 D 309
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 206
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 207 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 258
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCI 251
+ I D+ T ES +N T + G S+ D+ + SL ++ + A + S +
Sbjct: 138 IFIWDMNKCT-ESPSNYTPLTPGQSMSSVDE------VISLAWNQSLAHVFASAGSSNFA 190
Query: 252 YVYDLEANKLSLRILAHTS-------DVNTVCFGDESGHLIYS--GSD-DNLCKVWDRRC 301
++DL+A K + L++TS ++ V + ++ + + GSD D +WD R
Sbjct: 191 SIWDLKAKKEVIH-LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
Query: 302 LNVKGKPAGVL-MGHLEGITFID-SRGDGRYLISNGKDQAIKLWD 344
N P L GH +GI +D D L+S+G+D + LW+
Sbjct: 250 ANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 165
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 166 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 217
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 442
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSAS 101
Query: 443 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 477
V W P + P L+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSP 138
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 170
Query: 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 171 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 164 LAKSLRWTVTDTSLSPDQRHLV----YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219
+ K +TV D P V +A + ++ + ++ G ++ L EI
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL---REIEKAKPIK 69
Query: 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFG 278
+FG SL+ R L G +++++LEA ++ + + H +N +
Sbjct: 70 CG-----TFGATSLQ----QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120
Query: 279 DESGHL-----IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--------ITFIDSR 325
G I +GS D KVWD R K P M ++G + F ++
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPR---QKDDPVAN-MEPVQGENKRDCWTVAFGNAY 176
Query: 326 GDGRYLISNGKDQA-IKLWDIRKMSSNASCNL--GFRSYEWDYR 366
++ G D IKL+D+R M+ N+ G S E+D +
Sbjct: 177 NQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 278
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Query: 279 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 329
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 125
Query: 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389
L G D ++L+D + S S L + + + PP A +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EMKVLSIPP-------------ANHL 167
Query: 390 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 219
Query: 446 CSWHPS 451
SW PS
Sbjct: 220 ISWAPS 225
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 278
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 5 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 64
Query: 279 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 329
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 65 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 123
Query: 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389
L G D ++L+D + S S L + + + PP A +
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EMKVLSIPP-------------ANHL 165
Query: 390 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 166 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 217
Query: 446 CSWHPS 451
SW PS
Sbjct: 218 ISWAPS 223
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 278
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Query: 279 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 329
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 125
Query: 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389
L G D ++L+D + S S L + + + PP A +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EXKVLSIPP-------------ANHL 167
Query: 390 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 219
Query: 446 CSWHPS 451
SW PS
Sbjct: 220 ISWAPS 225
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 402 FSPVYSTGQKYIYTGSHDS----CVYVYDLVSGEQVAALKY-------------HTSPVR 444
FSP Q + +HDS C+ +Y+ GE++ +L H+S V
Sbjct: 241 FSP-----QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 445 DCSWHPSQPMLVSSSWDGDVVRWE 468
S++ S L S+ WDG + W+
Sbjct: 296 SLSFNDSGETLCSAGWDGKLRFWD 319
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 402 FSPVYSTGQKYIYTGSHDS----CVYVYDLVSGEQVAALKY-------------HTSPVR 444
FSP Q + +HDS C+ +Y+ GE++ +L H+S V
Sbjct: 251 FSP-----QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 445 DCSWHPSQPMLVSSSWDGDVVRWE 468
S++ S L S+ WDG + W+
Sbjct: 306 SLSFNDSGETLCSAGWDGKLRFWD 329
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRY 330
+N+VC+ E L++ G D + V G+ P L+GH + + S DG
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGV---PLFATSGEDPLYTLIGHQGNVCSL-SFQDG-V 116
Query: 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390
+IS D+ K+W + N + + WD + + + + + L D+++ ++
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAH---NASVWDAKVVSF-SENKFLTASADKTIKLWQN 172
Query: 391 HSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443
V++T H V + + S+D + + D +G+ + + H S V
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSW 448
HS L I CH ++ + I ++ V++Y+ + QV LK H V W
Sbjct: 4 HSFLVEPISCH---AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 60
Query: 449 HPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 486
P +V+ D + W G P L RI R
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINR 97
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSW 448
HS L I CH ++ + I ++ V++Y+ + QV LK H V W
Sbjct: 4 HSFLVEPISCH---AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 449 HPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 486
P +V+ D + W G P L RI R
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINR 97
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464
V +TG I + S D + Y+L E + + H + + +P L+S S+DG +
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
Query: 465 VRW 467
+ W
Sbjct: 360 MEW 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,391,800
Number of Sequences: 62578
Number of extensions: 663644
Number of successful extensions: 2486
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 514
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)