Query 011179
Match_columns 491
No_of_seqs 908 out of 3446
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-52 2.9E-57 356.1 26.3 298 115-475 106-444 (480)
2 KOG0286 G-protein beta subunit 100.0 2.8E-50 6.1E-55 330.5 29.7 296 117-468 48-343 (343)
3 KOG0271 Notchless-like WD40 re 100.0 8.9E-50 1.9E-54 338.9 24.7 327 80-468 105-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-49 1.2E-53 338.4 23.8 285 121-468 172-458 (459)
5 KOG0293 WD40 repeat-containing 100.0 4.7E-43 1E-47 300.8 26.1 306 108-472 208-515 (519)
6 KOG0265 U5 snRNP-specific prot 100.0 3.7E-41 8E-46 278.0 29.2 295 117-469 40-337 (338)
7 KOG0315 G-protein beta subunit 100.0 6.4E-41 1.4E-45 269.3 29.8 283 137-477 11-295 (311)
8 KOG0279 G protein beta subunit 100.0 2E-40 4.4E-45 270.9 30.9 291 118-470 9-313 (315)
9 KOG0645 WD40 repeat protein [G 100.0 4.5E-40 9.9E-45 267.7 31.6 292 117-470 7-311 (312)
10 KOG0284 Polyadenylation factor 100.0 6.3E-42 1.4E-46 293.6 19.8 290 122-474 94-384 (464)
11 KOG0273 Beta-transducin family 100.0 3.7E-40 8.1E-45 287.7 30.2 306 112-477 167-489 (524)
12 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-42 1.6E-46 294.5 18.3 251 112-426 205-458 (459)
13 KOG0295 WD40 repeat-containing 100.0 4.8E-40 1.1E-44 278.1 27.6 291 115-469 99-405 (406)
14 KOG0282 mRNA splicing factor [ 100.0 3.3E-41 7.2E-46 295.4 19.1 299 110-468 200-503 (503)
15 KOG0266 WD40 repeat-containing 100.0 2.6E-39 5.7E-44 308.9 33.0 290 122-470 157-454 (456)
16 KOG0273 Beta-transducin family 100.0 5.2E-39 1.1E-43 280.6 29.1 280 124-470 235-523 (524)
17 KOG0263 Transcription initiati 100.0 2.6E-40 5.6E-45 306.9 20.4 289 111-474 365-653 (707)
18 KOG0285 Pleiotropic regulator 100.0 4.8E-38 1E-42 265.4 28.9 291 115-471 142-440 (460)
19 KOG0318 WD40 repeat stress pro 100.0 1.6E-37 3.6E-42 274.8 33.1 328 108-475 174-565 (603)
20 cd00200 WD40 WD40 domain, foun 100.0 1.1E-36 2.5E-41 277.7 36.9 287 118-468 3-289 (289)
21 KOG0296 Angio-associated migra 100.0 3.5E-37 7.6E-42 261.0 28.6 324 116-470 56-398 (399)
22 PLN00181 protein SPA1-RELATED; 100.0 1.6E-36 3.4E-41 311.6 39.6 295 119-469 478-792 (793)
23 KOG0316 Conserved WD40 repeat- 100.0 4.4E-37 9.5E-42 245.2 26.8 290 112-468 5-297 (307)
24 KOG0315 G-protein beta subunit 100.0 4E-37 8.6E-42 247.5 26.6 279 112-449 28-309 (311)
25 KOG0279 G protein beta subunit 100.0 1.8E-36 3.9E-41 247.8 27.6 256 161-475 7-267 (315)
26 KOG0286 G-protein beta subunit 100.0 9.3E-36 2E-40 245.2 29.5 251 163-475 49-308 (343)
27 KOG0319 WD40-repeat-containing 100.0 8.7E-37 1.9E-41 280.7 24.3 333 103-477 126-584 (775)
28 KOG0319 WD40-repeat-containing 100.0 9.8E-37 2.1E-41 280.4 24.6 314 106-480 305-629 (775)
29 KOG0281 Beta-TrCP (transducin 100.0 1.5E-37 3.2E-42 261.6 15.7 275 123-475 196-482 (499)
30 KOG0318 WD40 repeat stress pro 100.0 2.6E-34 5.6E-39 254.7 35.9 314 99-476 34-356 (603)
31 KOG0291 WD40-repeat-containing 100.0 8.5E-35 1.9E-39 268.1 34.0 303 113-475 178-513 (893)
32 KOG0291 WD40-repeat-containing 100.0 1.4E-34 3E-39 266.7 33.0 290 122-476 263-556 (893)
33 KOG0263 Transcription initiati 100.0 1E-35 2.2E-40 276.4 24.4 206 118-347 445-650 (707)
34 KOG0275 Conserved WD40 repeat- 100.0 3.3E-36 7.2E-41 251.3 18.1 288 122-468 211-507 (508)
35 KOG0276 Vesicle coat complex C 100.0 3.7E-35 8.1E-40 265.0 26.1 292 118-473 7-301 (794)
36 KOG0278 Serine/threonine kinas 100.0 1.3E-35 2.8E-40 239.0 18.8 291 116-474 6-301 (334)
37 KOG0295 WD40 repeat-containing 100.0 3.8E-35 8.3E-40 248.5 22.7 258 165-477 104-371 (406)
38 KOG0643 Translation initiation 100.0 4.5E-34 9.7E-39 232.3 27.7 290 117-472 3-319 (327)
39 KOG0640 mRNA cleavage stimulat 100.0 6.6E-35 1.4E-39 242.0 23.3 299 117-469 105-425 (430)
40 KOG1407 WD40 repeat protein [F 100.0 5.5E-34 1.2E-38 231.1 26.6 288 118-470 14-311 (313)
41 KOG0772 Uncharacterized conser 100.0 1.2E-34 2.6E-39 256.1 24.5 317 109-470 152-487 (641)
42 KOG0288 WD40 repeat protein Ti 100.0 1.2E-35 2.7E-40 255.5 17.6 301 104-468 155-459 (459)
43 KOG0277 Peroxisomal targeting 100.0 3.7E-34 8E-39 231.1 24.1 285 127-469 11-308 (311)
44 KOG0281 Beta-TrCP (transducin 100.0 7.7E-36 1.7E-40 251.2 14.8 239 168-476 196-434 (499)
45 KOG0284 Polyadenylation factor 100.0 8.5E-36 1.8E-40 256.0 15.1 244 171-475 98-342 (464)
46 KOG0316 Conserved WD40 repeat- 100.0 1.6E-34 3.5E-39 230.6 20.5 252 163-477 11-264 (307)
47 KOG0283 WD40 repeat-containing 100.0 3.1E-34 6.8E-39 268.9 25.3 312 118-474 260-580 (712)
48 KOG0285 Pleiotropic regulator 100.0 2.1E-34 4.5E-39 243.5 21.1 248 164-474 146-393 (460)
49 KOG0292 Vesicle coat complex C 100.0 2.6E-33 5.6E-38 262.5 26.5 295 120-473 5-324 (1202)
50 KOG0266 WD40 repeat-containing 100.0 1.4E-32 3.1E-37 262.7 31.6 255 166-475 156-414 (456)
51 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-31 3.2E-36 223.5 33.4 296 118-474 8-307 (311)
52 KOG0313 Microtubule binding pr 100.0 1.7E-32 3.7E-37 233.8 28.1 293 117-471 98-419 (423)
53 KOG0310 Conserved WD40 repeat- 100.0 1.1E-32 2.3E-37 242.5 26.6 301 112-477 14-316 (487)
54 KOG0306 WD40-repeat-containing 100.0 3.1E-32 6.7E-37 251.2 29.2 287 118-471 367-665 (888)
55 KOG0265 U5 snRNP-specific prot 100.0 1.9E-32 4.2E-37 226.6 23.6 253 161-473 39-299 (338)
56 KOG0276 Vesicle coat complex C 100.0 1.2E-32 2.7E-37 248.8 23.3 249 168-474 12-261 (794)
57 KOG0973 Histone transcription 100.0 3.4E-32 7.3E-37 261.8 26.1 319 118-477 7-362 (942)
58 KOG0300 WD40 repeat-containing 100.0 2.3E-32 5E-37 227.8 21.5 307 117-472 141-478 (481)
59 KOG0274 Cdc4 and related F-box 100.0 1.6E-31 3.5E-36 254.0 30.1 282 122-476 206-488 (537)
60 KOG0645 WD40 repeat protein [G 100.0 6E-31 1.3E-35 214.6 28.8 254 162-472 7-263 (312)
61 KOG0305 Anaphase promoting com 100.0 7.3E-31 1.6E-35 240.1 29.2 278 128-473 181-464 (484)
62 KOG0292 Vesicle coat complex C 100.0 7.3E-32 1.6E-36 252.9 23.0 285 170-490 10-296 (1202)
63 KOG0641 WD40 repeat protein [G 100.0 1.6E-29 3.5E-34 201.0 31.9 290 124-470 32-349 (350)
64 KOG0306 WD40-repeat-containing 100.0 2E-30 4.4E-35 239.3 30.0 338 102-480 127-590 (888)
65 PTZ00421 coronin; Provisional 100.0 5.1E-30 1.1E-34 243.8 33.4 296 122-471 18-332 (493)
66 KOG0268 Sof1-like rRNA process 100.0 2.3E-32 5.1E-37 231.6 15.5 296 117-481 59-356 (433)
67 PLN00181 protein SPA1-RELATED; 100.0 5.2E-30 1.1E-34 263.6 36.1 274 145-472 457-740 (793)
68 KOG2096 WD40 repeat protein [G 100.0 6.2E-31 1.3E-35 219.3 23.5 311 118-469 80-401 (420)
69 KOG4283 Transcription-coupled 100.0 1E-30 2.2E-35 215.8 24.5 301 118-470 37-365 (397)
70 KOG1408 WD40 repeat protein [F 100.0 5.5E-31 1.2E-35 241.6 25.4 339 127-472 327-715 (1080)
71 KOG0299 U3 snoRNP-associated p 100.0 1.5E-30 3.2E-35 227.4 24.9 305 117-473 135-459 (479)
72 cd00200 WD40 WD40 domain, foun 100.0 1.2E-29 2.6E-34 231.3 31.5 247 166-473 6-252 (289)
73 KOG0296 Angio-associated migra 100.0 3.9E-30 8.5E-35 218.4 24.9 285 164-474 59-360 (399)
74 KOG0289 mRNA splicing factor [ 100.0 1.1E-29 2.4E-34 220.2 27.6 283 124-469 219-505 (506)
75 KOG0275 Conserved WD40 repeat- 100.0 4E-31 8.7E-36 221.0 16.8 256 169-475 213-472 (508)
76 KOG0282 mRNA splicing factor [ 100.0 2.8E-31 6.1E-36 233.3 16.6 255 162-476 207-468 (503)
77 KOG0647 mRNA export protein (c 100.0 3.6E-29 7.7E-34 207.4 26.9 278 124-459 27-312 (347)
78 KOG1446 Histone H3 (Lys4) meth 100.0 9.3E-29 2E-33 206.8 27.8 251 169-477 14-269 (311)
79 KOG0293 WD40 repeat-containing 100.0 7.1E-30 1.5E-34 220.0 21.1 293 74-429 208-514 (519)
80 PTZ00421 coronin; Provisional 100.0 1.4E-28 3E-33 234.0 31.3 257 171-473 22-293 (493)
81 KOG0277 Peroxisomal targeting 100.0 6.6E-30 1.4E-34 206.7 18.8 245 124-427 60-308 (311)
82 KOG0299 U3 snoRNP-associated p 100.0 2.5E-29 5.4E-34 219.8 23.2 263 166-476 139-416 (479)
83 PTZ00420 coronin; Provisional 100.0 1.1E-27 2.5E-32 228.6 35.0 257 142-453 50-319 (568)
84 KOG0313 Microtubule binding pr 100.0 6.5E-29 1.4E-33 212.0 22.6 271 113-427 133-417 (423)
85 KOG0301 Phospholipase A2-activ 100.0 1.7E-28 3.6E-33 224.9 26.6 284 117-474 7-292 (745)
86 KOG2055 WD40 repeat protein [G 100.0 2.3E-29 4.9E-34 220.0 18.2 347 15-428 157-512 (514)
87 KOG0294 WD40 repeat-containing 100.0 9.8E-28 2.1E-32 200.1 26.9 271 138-475 3-286 (362)
88 KOG0308 Conserved WD40 repeat- 100.0 3.5E-29 7.6E-34 227.7 18.8 291 123-472 20-329 (735)
89 PTZ00420 coronin; Provisional 100.0 2.7E-27 5.8E-32 226.1 32.3 230 187-472 50-295 (568)
90 KOG0264 Nucleosome remodeling 100.0 1E-28 2.2E-33 216.0 20.4 270 121-471 121-405 (422)
91 KOG0639 Transducin-like enhanc 100.0 1E-28 2.2E-33 218.1 20.4 285 121-469 416-703 (705)
92 KOG1036 Mitotic spindle checkp 100.0 5.1E-27 1.1E-31 195.5 29.0 279 124-460 13-294 (323)
93 KOG2055 WD40 repeat protein [G 100.0 6.3E-28 1.4E-32 211.0 23.3 292 123-470 212-512 (514)
94 KOG4328 WD40 protein [Function 100.0 1.1E-27 2.4E-32 209.3 24.0 308 117-469 179-494 (498)
95 KOG0274 Cdc4 and related F-box 100.0 3E-27 6.4E-32 225.1 28.0 259 108-439 232-493 (537)
96 KOG1332 Vesicle coat complex C 100.0 1.9E-28 4.2E-33 197.1 16.8 256 120-428 7-286 (299)
97 KOG0305 Anaphase promoting com 100.0 2.6E-27 5.6E-32 217.0 26.1 262 105-430 198-463 (484)
98 KOG1407 WD40 repeat protein [F 100.0 2.4E-27 5.1E-32 192.7 20.9 252 165-477 16-268 (313)
99 KOG0973 Histone transcription 100.0 2.9E-27 6.4E-32 228.0 25.3 265 166-473 10-315 (942)
100 KOG1408 WD40 repeat protein [F 100.0 7.7E-27 1.7E-31 214.6 26.4 204 270-480 460-681 (1080)
101 KOG0647 mRNA export protein (c 100.0 1.2E-26 2.6E-31 192.5 24.3 248 166-475 24-286 (347)
102 KOG0310 Conserved WD40 repeat- 100.0 2.1E-27 4.5E-32 209.4 20.3 242 170-472 27-270 (487)
103 KOG0269 WD40 repeat-containing 100.0 2.4E-27 5.3E-32 219.9 20.8 297 124-475 39-345 (839)
104 KOG0289 mRNA splicing factor [ 100.0 1.2E-26 2.5E-31 201.6 23.0 263 105-427 242-505 (506)
105 KOG0294 WD40 repeat-containing 100.0 6.9E-26 1.5E-30 189.1 26.4 265 115-448 34-305 (362)
106 KOG0650 WD40 repeat nucleolar 100.0 2.7E-26 5.9E-31 207.0 24.9 308 110-467 386-732 (733)
107 KOG0641 WD40 repeat protein [G 100.0 2.6E-25 5.6E-30 177.1 27.6 260 170-473 33-306 (350)
108 KOG0321 WD40 repeat-containing 100.0 1.9E-26 4.1E-31 209.6 23.4 297 128-476 53-397 (720)
109 KOG1273 WD40 repeat protein [G 100.0 2.9E-26 6.3E-31 191.3 22.6 292 127-474 26-326 (405)
110 KOG0646 WD40 repeat protein [G 100.0 2.5E-26 5.4E-31 201.5 22.8 272 145-478 17-315 (476)
111 KOG1274 WD40 repeat protein [G 100.0 1.5E-25 3.2E-30 212.1 29.3 281 121-468 10-298 (933)
112 KOG2919 Guanine nucleotide-bin 100.0 4.4E-26 9.6E-31 190.9 22.8 283 127-461 52-361 (406)
113 KOG0308 Conserved WD40 repeat- 100.0 1.1E-26 2.3E-31 211.6 20.1 220 117-348 66-287 (735)
114 KOG1332 Vesicle coat complex C 99.9 1.4E-26 3.1E-31 186.4 17.2 262 166-475 8-291 (299)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-24 5.1E-29 198.2 34.3 276 136-474 1-283 (300)
116 KOG0772 Uncharacterized conser 99.9 4.4E-26 9.5E-31 202.2 21.5 264 164-473 162-448 (641)
117 KOG0278 Serine/threonine kinas 99.9 7.6E-27 1.6E-31 188.6 15.0 254 113-433 48-302 (334)
118 KOG1539 WD repeat protein [Gen 99.9 3.1E-25 6.6E-30 207.7 27.9 307 106-476 184-612 (910)
119 KOG1036 Mitotic spindle checkp 99.9 2.9E-25 6.3E-30 185.1 24.5 244 167-475 11-267 (323)
120 KOG0288 WD40 repeat protein Ti 99.9 5.8E-27 1.3E-31 202.3 13.9 249 164-475 170-422 (459)
121 KOG2106 Uncharacterized conser 99.9 6.7E-24 1.5E-28 187.9 32.1 300 113-475 143-482 (626)
122 KOG2445 Nuclear pore complex c 99.9 8.4E-25 1.8E-29 182.1 24.6 278 121-472 10-320 (361)
123 KOG0643 Translation initiation 99.9 1.1E-24 2.3E-29 177.9 23.8 240 163-460 4-251 (327)
124 KOG0300 WD40 repeat-containing 99.9 2.5E-25 5.3E-30 186.0 20.2 270 138-478 126-436 (481)
125 KOG1063 RNA polymerase II elon 99.9 1.7E-24 3.8E-29 198.7 26.7 300 119-472 262-650 (764)
126 KOG1539 WD repeat protein [Gen 99.9 2.5E-24 5.4E-29 201.7 27.7 300 121-469 241-647 (910)
127 KOG0640 mRNA cleavage stimulat 99.9 1.3E-25 2.8E-30 187.0 16.6 266 164-474 107-387 (430)
128 KOG2048 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 191.8 31.4 229 106-347 92-320 (691)
129 KOG2106 Uncharacterized conser 99.9 6E-23 1.3E-27 182.0 33.5 286 118-471 194-522 (626)
130 KOG1274 WD40 repeat protein [G 99.9 2.5E-24 5.4E-29 203.9 26.5 249 166-471 10-263 (933)
131 KOG0646 WD40 repeat protein [G 99.9 9.2E-25 2E-29 191.8 21.9 271 137-453 51-332 (476)
132 KOG1063 RNA polymerase II elon 99.9 2.5E-24 5.4E-29 197.7 24.0 320 118-470 355-763 (764)
133 KOG0264 Nucleosome remodeling 99.9 8.2E-25 1.8E-29 191.7 19.5 219 115-347 168-405 (422)
134 KOG2048 WD40 repeat protein [G 99.9 2.1E-23 4.6E-28 191.3 28.8 283 123-471 24-320 (691)
135 KOG0639 Transducin-like enhanc 99.9 6.2E-25 1.3E-29 194.3 17.8 253 167-479 417-672 (705)
136 KOG0267 Microtubule severing p 99.9 3.8E-26 8.3E-31 210.4 10.4 257 136-462 4-260 (825)
137 KOG4283 Transcription-coupled 99.9 3.1E-24 6.6E-29 177.7 20.3 234 167-476 41-282 (397)
138 KOG0268 Sof1-like rRNA process 99.9 2.8E-25 6.1E-30 188.8 14.2 263 103-434 88-351 (433)
139 KOG1009 Chromatin assembly com 99.9 2E-23 4.3E-28 180.3 24.9 327 124-475 13-377 (434)
140 KOG0301 Phospholipase A2-activ 99.9 2.9E-24 6.3E-29 197.3 21.0 240 164-471 9-250 (745)
141 KOG0283 WD40 repeat-containing 99.9 2.5E-24 5.4E-29 202.7 20.7 209 115-349 360-579 (712)
142 KOG0267 Microtubule severing p 99.9 5.3E-26 1.2E-30 209.5 9.2 201 226-471 27-227 (825)
143 KOG0302 Ribosome Assembly prot 99.9 1.2E-23 2.6E-28 179.9 20.8 213 119-347 146-379 (440)
144 KOG0307 Vesicle coat complex C 99.9 7E-25 1.5E-29 212.7 14.4 291 128-473 10-330 (1049)
145 KOG0302 Ribosome Assembly prot 99.9 1.6E-23 3.5E-28 179.1 20.5 263 166-468 148-436 (440)
146 KOG1034 Transcriptional repres 99.9 2.6E-22 5.6E-27 168.8 27.3 309 118-470 32-383 (385)
147 KOG0269 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 201.3 14.9 251 171-476 41-302 (839)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.9E-22 1.9E-26 181.0 33.1 257 125-450 31-300 (300)
149 KOG4227 WD40 repeat protein [G 99.9 5.3E-23 1.2E-27 176.8 21.9 296 117-469 49-386 (609)
150 KOG0270 WD40 repeat-containing 99.9 2.1E-23 4.6E-28 182.1 19.4 193 136-347 192-405 (463)
151 KOG0270 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 176.6 24.0 304 127-475 128-454 (463)
152 KOG1188 WD40 repeat protein [G 99.9 4.6E-23 1E-27 174.2 19.7 292 137-473 41-349 (376)
153 KOG0322 G-protein beta subunit 99.9 2E-23 4.3E-28 170.3 14.3 299 112-469 2-322 (323)
154 KOG1445 Tumor-specific antigen 99.9 2.9E-22 6.3E-27 182.4 19.8 127 116-258 71-201 (1012)
155 KOG4378 Nuclear protein COP1 [ 99.9 5.7E-22 1.2E-26 175.5 20.5 263 126-452 36-305 (673)
156 KOG1538 Uncharacterized conser 99.9 9.6E-22 2.1E-26 180.1 21.5 277 126-472 14-295 (1081)
157 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-22 1.2E-26 175.6 18.6 275 144-478 10-288 (673)
158 KOG1007 WD repeat protein TSSC 99.9 2E-21 4.3E-26 160.7 19.8 285 119-471 58-362 (370)
159 KOG2096 WD40 repeat protein [G 99.9 1.8E-21 3.9E-26 163.1 19.1 209 222-472 81-310 (420)
160 KOG0307 Vesicle coat complex C 99.9 1.7E-22 3.7E-27 196.3 14.0 254 122-431 62-330 (1049)
161 KOG1310 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 169.4 23.9 224 116-347 42-304 (758)
162 KOG1517 Guanine nucleotide bin 99.9 1E-20 2.2E-25 181.9 25.1 310 122-473 1062-1384(1387)
163 KOG0321 WD40 repeat-containing 99.9 5.9E-21 1.3E-25 174.2 21.9 309 118-470 94-445 (720)
164 KOG0290 Conserved WD40 repeat- 99.9 8.6E-20 1.9E-24 151.2 24.4 290 125-466 45-361 (364)
165 KOG1334 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 173.0 14.1 318 117-475 135-471 (559)
166 KOG0649 WD40 repeat protein [G 99.9 3.1E-19 6.7E-24 144.2 25.7 282 125-468 11-314 (325)
167 KOG1034 Transcriptional repres 99.9 9.6E-21 2.1E-25 159.5 17.3 252 122-428 87-383 (385)
168 COG2319 FOG: WD40 repeat [Gene 99.9 4E-18 8.7E-23 165.1 37.2 292 119-473 60-362 (466)
169 KOG0290 Conserved WD40 repeat- 99.9 1E-19 2.2E-24 150.8 21.2 251 170-474 45-322 (364)
170 KOG2445 Nuclear pore complex c 99.9 8.8E-20 1.9E-24 152.4 20.9 223 224-471 10-257 (361)
171 KOG4328 WD40 protein [Function 99.9 3.7E-20 8E-25 162.6 19.6 255 166-473 183-453 (498)
172 KOG1273 WD40 repeat protein [G 99.9 5.5E-20 1.2E-24 154.1 19.1 200 230-471 26-227 (405)
173 KOG0303 Actin-binding protein 99.9 1.7E-19 3.7E-24 155.6 21.5 207 223-474 77-298 (472)
174 PRK11028 6-phosphogluconolacto 99.9 1.3E-18 2.8E-23 161.4 29.5 282 140-471 6-305 (330)
175 KOG0644 Uncharacterized conser 99.9 5.5E-21 1.2E-25 179.3 12.8 295 118-491 184-483 (1113)
176 KOG1538 Uncharacterized conser 99.9 9.6E-20 2.1E-24 167.1 20.4 263 96-428 25-293 (1081)
177 KOG1963 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 165.1 28.5 296 121-472 202-540 (792)
178 KOG1587 Cytoplasmic dynein int 99.8 9.2E-19 2E-23 165.8 26.9 280 146-476 222-522 (555)
179 KOG0650 WD40 repeat nucleolar 99.8 2.2E-19 4.7E-24 162.9 20.3 242 163-468 394-678 (733)
180 KOG0642 Cell-cycle nuclear pro 99.8 2.6E-20 5.7E-25 167.8 13.6 261 164-475 289-566 (577)
181 KOG1523 Actin-related protein 99.8 1.4E-18 3.1E-23 146.1 22.9 214 121-349 7-239 (361)
182 KOG1240 Protein kinase contain 99.8 3.6E-18 7.9E-23 167.1 27.0 318 118-468 1042-1431(1431)
183 KOG2110 Uncharacterized conser 99.8 7.2E-17 1.6E-21 138.6 31.3 280 124-472 5-332 (391)
184 KOG1445 Tumor-specific antigen 99.8 2.4E-19 5.2E-24 163.7 17.0 244 177-474 587-848 (1012)
185 COG2319 FOG: WD40 repeat [Gene 99.8 9E-17 2E-21 155.6 36.4 291 115-471 146-443 (466)
186 KOG0771 Prolactin regulatory e 99.8 1.8E-18 3.8E-23 151.1 20.3 205 231-476 148-360 (398)
187 KOG2919 Guanine nucleotide-bin 99.8 4.9E-18 1.1E-22 143.0 21.7 254 172-474 52-331 (406)
188 KOG0303 Actin-binding protein 99.8 1.9E-18 4.2E-23 149.1 19.5 211 118-348 75-296 (472)
189 KOG1587 Cytoplasmic dynein int 99.8 6.4E-18 1.4E-22 160.2 24.8 277 107-429 225-517 (555)
190 KOG4227 WD40 repeat protein [G 99.8 1.9E-18 4.2E-23 149.0 18.3 262 166-474 53-326 (609)
191 PRK01742 tolB translocation pr 99.8 4.1E-18 8.9E-23 162.9 22.0 235 145-451 183-426 (429)
192 KOG0642 Cell-cycle nuclear pro 99.8 9.2E-19 2E-23 158.0 16.1 273 117-440 287-573 (577)
193 KOG1007 WD repeat protein TSSC 99.8 4E-18 8.6E-23 141.3 18.5 218 113-347 111-362 (370)
194 KOG1963 WD40 repeat protein [G 99.8 2.9E-16 6.4E-21 149.4 31.5 338 128-475 20-492 (792)
195 KOG0649 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 132.4 20.8 249 171-472 12-276 (325)
196 KOG4497 Uncharacterized conser 99.8 2.7E-17 5.8E-22 139.0 20.8 323 129-481 13-402 (447)
197 PRK11028 6-phosphogluconolacto 99.8 3.8E-16 8.3E-21 144.9 30.9 252 124-428 34-304 (330)
198 KOG1272 WD40-repeat-containing 99.8 2.5E-18 5.3E-23 151.6 12.7 277 120-468 125-407 (545)
199 KOG0644 Uncharacterized conser 99.8 5.8E-19 1.3E-23 166.0 9.3 242 166-475 187-431 (1113)
200 KOG1009 Chromatin assembly com 99.8 9.1E-17 2E-21 139.5 22.0 272 171-472 15-331 (434)
201 KOG2321 WD40 repeat protein [G 99.8 1.9E-16 4E-21 143.5 24.2 293 122-476 49-349 (703)
202 KOG0771 Prolactin regulatory e 99.8 1.2E-17 2.6E-22 145.9 15.5 197 128-347 148-355 (398)
203 KOG2110 Uncharacterized conser 99.8 5.4E-15 1.2E-19 127.2 31.0 199 124-349 46-251 (391)
204 KOG1354 Serine/threonine prote 99.8 1.3E-16 2.7E-21 135.7 19.9 308 124-467 25-431 (433)
205 KOG1524 WD40 repeat-containing 99.8 3.5E-17 7.6E-22 146.9 17.0 208 137-425 76-283 (737)
206 PRK03629 tolB translocation pr 99.8 1.3E-15 2.7E-20 145.4 28.6 237 146-451 179-428 (429)
207 KOG1524 WD40 repeat-containing 99.8 9.2E-17 2E-21 144.2 19.1 264 122-466 12-282 (737)
208 KOG2394 WD40 protein DMR-N9 [G 99.7 6.9E-16 1.5E-20 138.8 22.7 278 126-476 125-458 (636)
209 KOG1523 Actin-related protein 99.7 3.8E-16 8.3E-21 131.6 19.7 246 170-451 11-260 (361)
210 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-14 2.5E-19 134.5 31.5 308 137-475 6-352 (369)
211 KOG1310 WD40 repeat protein [G 99.7 6.3E-17 1.4E-21 145.7 14.7 241 164-436 45-311 (758)
212 PRK01742 tolB translocation pr 99.7 1.7E-15 3.7E-20 145.0 24.5 214 190-470 183-401 (429)
213 KOG2139 WD40 repeat protein [G 99.7 2.6E-14 5.7E-19 122.6 26.0 318 124-471 98-432 (445)
214 KOG1188 WD40 repeat protein [G 99.7 1E-15 2.2E-20 130.2 17.3 195 240-475 41-247 (376)
215 KOG1517 Guanine nucleotide bin 99.7 3.7E-15 8.1E-20 144.3 23.2 251 171-475 1066-1338(1387)
216 PRK02889 tolB translocation pr 99.7 8.6E-15 1.9E-19 139.9 24.2 237 146-451 176-425 (427)
217 KOG2394 WD40 protein DMR-N9 [G 99.7 5.3E-16 1.1E-20 139.5 14.3 187 133-325 182-383 (636)
218 PRK04922 tolB translocation pr 99.7 1.8E-14 4E-19 138.2 25.8 234 146-450 184-432 (433)
219 PRK05137 tolB translocation pr 99.7 5E-14 1.1E-18 135.4 28.7 234 146-451 182-433 (435)
220 PRK03629 tolB translocation pr 99.7 1.6E-13 3.5E-18 131.0 31.1 215 192-473 180-409 (429)
221 KOG2111 Uncharacterized conser 99.7 4.5E-13 9.7E-18 113.3 29.6 280 126-472 7-324 (346)
222 KOG2139 WD40 repeat protein [G 99.7 7.6E-14 1.6E-18 119.9 25.4 204 123-347 139-384 (445)
223 KOG2315 Predicted translation 99.7 2.5E-13 5.4E-18 123.4 28.0 281 124-473 34-393 (566)
224 PRK04922 tolB translocation pr 99.7 2.9E-13 6.3E-18 129.9 29.8 215 191-472 184-413 (433)
225 KOG1240 Protein kinase contain 99.6 5.7E-14 1.2E-18 138.3 24.1 261 165-475 1044-1339(1431)
226 KOG1334 WD40 repeat protein [G 99.6 2.7E-15 5.9E-20 133.4 13.6 265 165-473 138-427 (559)
227 KOG4497 Uncharacterized conser 99.6 3.1E-13 6.7E-18 114.7 24.5 277 124-464 48-426 (447)
228 KOG3881 Uncharacterized conser 99.6 4.9E-14 1.1E-18 122.2 20.2 257 171-483 57-333 (412)
229 KOG1272 WD40-repeat-containing 99.6 9.7E-16 2.1E-20 135.4 9.1 231 171-469 131-361 (545)
230 PRK05137 tolB translocation pr 99.6 3.8E-13 8.1E-18 129.3 27.5 215 192-473 183-415 (435)
231 KOG0322 G-protein beta subunit 99.6 1.7E-14 3.7E-19 118.5 15.3 252 116-427 47-322 (323)
232 PRK02889 tolB translocation pr 99.6 4.2E-13 9E-18 128.4 24.7 196 229-470 197-403 (427)
233 KOG0280 Uncharacterized conser 99.6 9.3E-13 2E-17 110.2 22.1 276 145-472 45-335 (339)
234 PF02239 Cytochrom_D1: Cytochr 99.6 7.1E-12 1.5E-16 116.1 30.2 258 126-437 38-356 (369)
235 KOG2111 Uncharacterized conser 99.6 9.4E-12 2E-16 105.5 27.7 178 146-349 75-259 (346)
236 TIGR02800 propeller_TolB tol-p 99.6 2.7E-12 5.8E-17 123.7 27.9 233 146-449 170-417 (417)
237 PRK04792 tolB translocation pr 99.6 1.2E-12 2.7E-17 125.4 25.3 234 147-451 199-447 (448)
238 KOG3881 Uncharacterized conser 99.6 2.9E-13 6.3E-18 117.6 17.7 211 121-349 102-323 (412)
239 KOG1409 Uncharacterized conser 99.6 8.4E-14 1.8E-18 118.8 14.2 206 121-349 65-273 (404)
240 COG5354 Uncharacterized protei 99.6 8.1E-12 1.8E-16 112.4 27.2 298 119-473 27-398 (561)
241 KOG0974 WD-repeat protein WDR6 99.6 9.1E-13 2E-17 128.2 22.6 198 127-348 90-290 (967)
242 PF10282 Lactonase: Lactonase, 99.6 1.9E-11 4.1E-16 113.6 30.7 286 139-471 2-323 (345)
243 KOG2321 WD40 repeat protein [G 99.6 5.3E-13 1.2E-17 121.4 19.2 257 167-477 49-309 (703)
244 PRK00178 tolB translocation pr 99.5 5.3E-12 1.2E-16 121.7 27.3 234 147-451 180-428 (430)
245 PF08662 eIF2A: Eukaryotic tra 99.5 1E-12 2.3E-17 110.4 19.5 149 128-300 9-179 (194)
246 KOG2314 Translation initiation 99.5 1.9E-12 4.1E-17 117.5 21.8 284 126-472 212-575 (698)
247 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.5E-17 110.1 19.4 150 173-347 9-180 (194)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.4E-10 3E-15 105.0 32.4 283 146-477 27-337 (352)
249 PF10282 Lactonase: Lactonase, 99.5 2.4E-10 5.3E-15 106.2 34.3 283 126-448 38-345 (345)
250 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.4E-16 118.3 26.6 193 229-471 191-398 (417)
251 PRK01029 tolB translocation pr 99.5 2.1E-11 4.6E-16 116.0 26.0 242 146-452 165-426 (428)
252 KOG1354 Serine/threonine prote 99.5 8.4E-13 1.8E-17 112.8 14.1 274 171-473 27-362 (433)
253 KOG0974 WD-repeat protein WDR6 99.5 2.1E-12 4.6E-17 125.7 17.6 200 171-429 89-289 (967)
254 KOG0280 Uncharacterized conser 99.5 2.1E-11 4.6E-16 102.2 20.6 207 124-348 69-286 (339)
255 COG2706 3-carboxymuconate cycl 99.5 3.8E-10 8.3E-15 98.0 29.0 278 145-472 15-323 (346)
256 KOG4547 WD40 repeat-containing 99.5 1.9E-11 4.1E-16 112.2 21.8 194 133-347 2-221 (541)
257 PRK00178 tolB translocation pr 99.5 6.6E-11 1.4E-15 114.1 26.8 195 229-473 200-409 (430)
258 PRK04792 tolB translocation pr 99.4 7.5E-11 1.6E-15 113.2 26.4 194 229-472 219-427 (448)
259 KOG0309 Conserved WD40 repeat- 99.4 1E-12 2.2E-17 123.0 12.8 303 123-472 23-341 (1081)
260 COG4946 Uncharacterized protei 99.4 6E-10 1.3E-14 99.7 27.8 175 132-335 327-507 (668)
261 KOG1064 RAVE (regulator of V-A 99.4 1.2E-12 2.6E-17 133.7 12.3 220 171-463 2210-2439(2439)
262 KOG2041 WD40 repeat protein [G 99.4 5.5E-11 1.2E-15 111.4 22.2 288 124-471 14-338 (1189)
263 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 110.3 25.1 209 117-348 177-405 (428)
264 COG5170 CDC55 Serine/threonine 99.4 1.5E-11 3.2E-16 103.9 15.7 223 124-349 26-312 (460)
265 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.7E-09 1.2E-13 94.6 32.5 245 132-437 53-339 (352)
266 COG2706 3-carboxymuconate cycl 99.4 6.1E-09 1.3E-13 90.7 31.0 288 121-449 36-345 (346)
267 PF04762 IKI3: IKI3 family; I 99.4 2.8E-09 6.1E-14 109.8 34.3 328 122-473 73-459 (928)
268 KOG4547 WD40 repeat-containing 99.4 3.7E-10 8E-15 103.9 24.0 195 179-429 3-221 (541)
269 KOG1064 RAVE (regulator of V-A 99.3 1.1E-11 2.5E-16 126.8 13.5 192 121-349 2205-2401(2439)
270 TIGR03300 assembly_YfgL outer 99.3 4.4E-09 9.4E-14 99.7 29.2 264 135-474 64-342 (377)
271 KOG1409 Uncharacterized conser 99.3 2.5E-10 5.4E-15 98.0 17.0 250 165-475 20-275 (404)
272 KOG2315 Predicted translation 99.3 1.7E-09 3.6E-14 99.0 23.2 253 128-451 129-411 (566)
273 PLN02919 haloacid dehalogenase 99.3 1E-08 2.2E-13 107.7 30.2 274 173-474 571-892 (1057)
274 TIGR03300 assembly_YfgL outer 99.3 1.5E-08 3.3E-13 96.0 28.9 261 135-467 104-376 (377)
275 PLN02919 haloacid dehalogenase 99.2 1.2E-08 2.6E-13 107.2 29.8 273 128-432 571-892 (1057)
276 KOG2041 WD40 repeat protein [G 99.2 3.1E-10 6.7E-15 106.5 15.3 257 170-461 15-279 (1189)
277 PF15492 Nbas_N: Neuroblastoma 99.2 4.5E-08 9.8E-13 82.8 25.6 233 175-475 3-264 (282)
278 COG4946 Uncharacterized protei 99.2 2.8E-08 6E-13 89.3 25.4 193 128-347 270-478 (668)
279 COG5354 Uncharacterized protei 99.2 2.3E-08 4.9E-13 90.7 25.0 278 124-462 71-421 (561)
280 KOG3914 WD repeat protein WDR4 99.2 3.3E-10 7.1E-15 99.4 12.8 163 127-312 65-231 (390)
281 PF15492 Nbas_N: Neuroblastoma 99.2 5.5E-08 1.2E-12 82.3 25.2 149 130-290 3-167 (282)
282 PRK04043 tolB translocation pr 99.2 3.8E-08 8.3E-13 93.2 27.6 209 171-448 189-419 (419)
283 KOG1912 WD40 repeat protein [G 99.2 3.7E-08 8E-13 93.8 25.3 218 106-347 37-305 (1062)
284 KOG4190 Uncharacterized conser 99.1 5.7E-10 1.2E-14 101.7 11.5 288 117-466 728-1032(1034)
285 KOG4532 WD40-like repeat conta 99.1 3.1E-08 6.7E-13 82.5 20.5 191 137-349 85-285 (344)
286 PF04762 IKI3: IKI3 family; I 99.1 2.6E-07 5.5E-12 95.6 31.7 284 125-469 22-378 (928)
287 KOG4532 WD40-like repeat conta 99.1 1E-08 2.2E-13 85.3 17.3 194 239-475 84-287 (344)
288 KOG4714 Nucleoporin [Nuclear s 99.1 3.4E-09 7.4E-14 87.6 14.2 202 127-347 39-255 (319)
289 KOG2695 WD40 repeat protein [G 99.1 5.6E-10 1.2E-14 95.9 9.8 168 243-449 228-401 (425)
290 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 89.2 27.3 194 229-474 189-404 (419)
291 KOG3914 WD repeat protein WDR4 99.1 3.1E-09 6.8E-14 93.4 13.4 160 172-352 65-229 (390)
292 COG5170 CDC55 Serine/threonine 99.0 9.8E-09 2.1E-13 87.2 13.9 273 170-471 27-368 (460)
293 KOG2314 Translation initiation 99.0 3.4E-07 7.3E-12 84.1 24.5 290 148-471 192-526 (698)
294 KOG4190 Uncharacterized conser 99.0 2.2E-09 4.8E-14 98.0 10.5 247 163-469 729-987 (1034)
295 PF08450 SGL: SMP-30/Gluconola 99.0 1.1E-06 2.5E-11 77.7 27.8 223 174-458 4-243 (246)
296 KOG1832 HIV-1 Vpr-binding prot 99.0 3.7E-10 8.1E-15 108.4 4.9 207 103-350 1083-1295(1516)
297 KOG1912 WD40 repeat protein [G 99.0 1.2E-07 2.6E-12 90.4 21.0 271 171-471 17-305 (1062)
298 KOG2695 WD40 repeat protein [G 99.0 4.2E-09 9.1E-14 90.7 9.9 150 185-354 228-384 (425)
299 KOG4714 Nucleoporin [Nuclear s 98.9 8.4E-09 1.8E-13 85.4 10.4 173 110-300 75-254 (319)
300 PF13360 PQQ_2: PQQ-like domai 98.9 3.6E-06 7.8E-11 74.3 28.3 222 145-435 2-237 (238)
301 KOG0309 Conserved WD40 repeat- 98.9 8E-09 1.7E-13 97.6 11.3 276 112-429 54-340 (1081)
302 KOG0882 Cyclophilin-related pe 98.9 3E-08 6.4E-13 88.5 13.4 315 123-467 8-369 (558)
303 KOG1275 PAB-dependent poly(A) 98.9 1.4E-07 3E-12 91.6 18.1 182 238-468 146-340 (1118)
304 KOG3621 WD40 repeat-containing 98.9 7.1E-07 1.5E-11 84.6 22.2 154 123-290 32-189 (726)
305 PRK11138 outer membrane biogen 98.9 3.2E-06 6.9E-11 80.5 27.4 266 136-474 69-357 (394)
306 PF00400 WD40: WD domain, G-be 98.9 5.8E-09 1.3E-13 62.4 5.5 39 430-468 1-39 (39)
307 PRK11138 outer membrane biogen 98.9 3.5E-06 7.6E-11 80.3 26.7 265 135-469 119-393 (394)
308 PF08450 SGL: SMP-30/Gluconola 98.8 2.6E-05 5.7E-10 69.0 30.4 197 129-347 4-214 (246)
309 PF07433 DUF1513: Protein of u 98.8 5.3E-06 1.1E-10 72.8 24.9 234 172-464 7-279 (305)
310 PF13360 PQQ_2: PQQ-like domai 98.8 2.1E-06 4.4E-11 75.8 23.3 224 190-474 2-234 (238)
311 KOG1920 IkappaB kinase complex 98.8 1.1E-05 2.5E-10 81.4 29.1 217 123-347 67-323 (1265)
312 PF14583 Pectate_lyase22: Olig 98.8 2.2E-05 4.7E-10 71.3 26.8 197 130-347 41-273 (386)
313 PF07433 DUF1513: Protein of u 98.8 2.1E-05 4.6E-10 69.1 25.9 202 125-349 5-250 (305)
314 KOG1920 IkappaB kinase complex 98.8 2.1E-06 4.6E-11 86.4 22.1 236 170-472 69-324 (1265)
315 PF06433 Me-amine-dh_H: Methyl 98.7 1.1E-05 2.3E-10 71.8 22.6 279 146-475 17-325 (342)
316 KOG1645 RING-finger-containing 98.7 2.7E-06 5.8E-11 75.3 18.6 238 225-471 191-462 (463)
317 KOG0882 Cyclophilin-related pe 98.7 6.4E-07 1.4E-11 80.3 14.4 259 168-473 8-308 (558)
318 KOG1275 PAB-dependent poly(A) 98.7 4.9E-07 1.1E-11 87.9 14.3 184 181-426 147-340 (1118)
319 KOG2066 Vacuolar assembly/sort 98.7 2.8E-06 6E-11 81.9 18.6 140 135-300 82-233 (846)
320 PRK02888 nitrous-oxide reducta 98.6 1.8E-05 3.9E-10 76.2 23.6 257 139-429 69-405 (635)
321 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 56.9 5.6 38 307-344 2-39 (39)
322 KOG4649 PQQ (pyrrolo-quinoline 98.6 8.7E-05 1.9E-09 62.3 24.3 138 136-295 23-160 (354)
323 KOG2114 Vacuolar assembly/sort 98.6 3.5E-05 7.5E-10 75.2 23.5 206 130-347 29-244 (933)
324 PF00930 DPPIV_N: Dipeptidyl p 98.5 6.6E-05 1.4E-09 70.3 24.2 107 133-246 1-119 (353)
325 PF06977 SdiA-regulated: SdiA- 98.5 5.2E-05 1.1E-09 65.7 21.5 210 118-342 15-246 (248)
326 KOG2066 Vacuolar assembly/sort 98.5 2.1E-06 4.6E-11 82.6 13.9 183 124-347 39-234 (846)
327 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00014 3E-09 61.1 22.3 142 181-345 23-164 (354)
328 PF11768 DUF3312: Protein of u 98.5 2.8E-06 6E-11 79.5 13.9 77 122-203 257-333 (545)
329 PF06433 Me-amine-dh_H: Methyl 98.5 0.00035 7.6E-09 62.4 25.9 153 128-300 39-213 (342)
330 PF11768 DUF3312: Protein of u 98.5 0.00013 2.9E-09 68.6 24.2 111 230-347 208-330 (545)
331 KOG3617 WD40 and TPR repeat-co 98.5 6.5E-06 1.4E-10 79.8 15.6 187 128-347 19-221 (1416)
332 KOG1832 HIV-1 Vpr-binding prot 98.5 1.8E-07 4E-12 90.5 5.3 119 225-351 1099-1219(1516)
333 cd00216 PQQ_DH Dehydrogenases 98.4 0.00077 1.7E-08 66.0 29.0 277 136-476 61-430 (488)
334 COG0823 TolB Periplasmic compo 98.4 0.00011 2.5E-09 69.4 21.6 183 229-459 194-388 (425)
335 KOG1645 RING-finger-containing 98.3 6.7E-05 1.5E-09 66.8 17.5 83 117-203 186-270 (463)
336 KOG2114 Vacuolar assembly/sort 98.3 8.9E-05 1.9E-09 72.4 19.7 203 234-475 30-248 (933)
337 KOG1008 Uncharacterized conser 98.3 2.9E-07 6.4E-12 86.1 2.8 203 229-473 58-278 (783)
338 PF08596 Lgl_C: Lethal giant l 98.3 0.0011 2.4E-08 62.2 25.8 252 171-460 3-326 (395)
339 PF04053 Coatomer_WDAD: Coatom 98.3 0.00068 1.5E-08 64.5 24.0 182 123-342 31-219 (443)
340 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00033 7.2E-09 65.6 21.9 207 124-336 42-301 (353)
341 COG0823 TolB Periplasmic compo 98.2 0.00026 5.6E-09 67.1 20.7 155 171-347 194-359 (425)
342 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0048 1E-07 58.7 28.9 194 128-347 32-247 (410)
343 KOG1008 Uncharacterized conser 98.2 5.9E-07 1.3E-11 84.1 1.3 204 126-348 58-277 (783)
344 PF02897 Peptidase_S9_N: Proly 98.2 0.0082 1.8E-07 57.8 30.6 203 126-346 125-357 (414)
345 cd00216 PQQ_DH Dehydrogenases 98.1 0.0084 1.8E-07 58.8 29.0 259 137-438 111-434 (488)
346 PRK02888 nitrous-oxide reducta 98.1 0.00026 5.7E-09 68.4 17.4 148 130-300 198-404 (635)
347 PF08596 Lgl_C: Lethal giant l 98.1 0.0024 5.2E-08 59.9 22.9 212 126-350 3-294 (395)
348 KOG3617 WD40 and TPR repeat-co 98.1 9.3E-05 2E-09 72.1 13.5 110 172-300 18-131 (1416)
349 PF06977 SdiA-regulated: SdiA- 98.1 0.0051 1.1E-07 53.5 23.2 203 229-467 23-247 (248)
350 PF00780 CNH: CNH domain; Int 98.0 0.0027 5.8E-08 57.3 22.3 148 179-350 5-169 (275)
351 KOG3621 WD40 repeat-containing 98.0 0.0002 4.4E-09 68.5 14.5 150 168-334 32-187 (726)
352 PF04053 Coatomer_WDAD: Coatom 98.0 0.0025 5.4E-08 60.7 21.7 141 171-347 34-174 (443)
353 COG3391 Uncharacterized conser 98.0 0.019 4E-07 54.4 29.1 263 148-473 13-286 (381)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.026 5.7E-07 55.7 29.1 196 136-351 69-338 (527)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.013 2.7E-07 54.3 24.9 178 146-347 2-203 (321)
356 PF03178 CPSF_A: CPSF A subuni 97.9 0.0069 1.5E-07 56.0 22.9 217 191-467 2-262 (321)
357 COG3391 Uncharacterized conser 97.9 0.023 5.1E-07 53.7 27.6 264 126-451 32-309 (381)
358 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.02 4.4E-07 53.7 24.9 35 314-348 305-339 (415)
359 smart00320 WD40 WD40 repeats. 97.8 6.1E-05 1.3E-09 44.1 5.4 39 430-468 2-40 (40)
360 PRK13616 lipoprotein LpqB; Pro 97.8 0.0028 6.1E-08 62.8 19.7 194 125-340 350-562 (591)
361 COG3204 Uncharacterized protei 97.8 0.0076 1.7E-07 52.2 19.4 175 118-300 79-263 (316)
362 PF08553 VID27: VID27 cytoplas 97.8 0.024 5.2E-07 57.5 25.3 143 182-346 494-647 (794)
363 PF07995 GSDH: Glucose / Sorbo 97.7 0.034 7.3E-07 51.5 23.9 57 409-465 270-330 (331)
364 KOG2444 WD40 repeat protein [G 97.7 6.1E-05 1.3E-09 62.2 4.8 69 409-477 113-184 (238)
365 COG3490 Uncharacterized protei 97.7 0.0044 9.6E-08 53.2 15.7 192 131-344 120-346 (366)
366 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.014 2.9E-07 43.0 15.1 67 272-346 2-71 (111)
367 KOG1897 Damage-specific DNA bi 97.6 0.12 2.5E-06 52.6 28.6 63 409-473 839-901 (1096)
368 PF04841 Vps16_N: Vps16, N-ter 97.6 0.059 1.3E-06 51.4 24.0 53 404-456 222-275 (410)
369 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.013 2.9E-07 43.1 15.1 100 230-341 2-109 (111)
370 PF02897 Peptidase_S9_N: Proly 97.5 0.091 2E-06 50.6 29.5 248 171-473 125-407 (414)
371 PF14583 Pectate_lyase22: Olig 97.5 0.072 1.6E-06 49.0 23.0 250 152-461 16-303 (386)
372 KOG1897 Damage-specific DNA bi 97.5 0.15 3.2E-06 51.9 27.0 187 139-348 687-900 (1096)
373 KOG4640 Anaphase-promoting com 97.5 0.00076 1.6E-08 64.0 9.8 82 121-206 17-99 (665)
374 KOG4441 Proteins containing BT 97.5 0.02 4.3E-07 56.9 19.9 191 133-347 282-500 (571)
375 PF14870 PSII_BNR: Photosynthe 97.4 0.085 1.8E-06 47.5 28.1 280 124-467 16-301 (302)
376 smart00320 WD40 WD40 repeats. 97.4 0.00049 1.1E-08 40.0 5.3 38 307-344 3-40 (40)
377 KOG4441 Proteins containing BT 97.4 0.035 7.5E-07 55.3 20.4 228 180-472 284-548 (571)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.18 3.9E-06 49.9 28.5 162 137-300 121-333 (527)
379 KOG2395 Protein involved in va 97.3 0.011 2.3E-07 55.4 15.0 144 180-347 344-501 (644)
380 COG3386 Gluconolactonase [Carb 97.3 0.12 2.5E-06 46.9 25.2 226 175-461 30-277 (307)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.078 1.7E-06 49.9 20.8 72 402-475 311-403 (415)
382 COG3204 Uncharacterized protei 97.3 0.098 2.1E-06 45.7 20.2 119 228-347 86-211 (316)
383 PHA02713 hypothetical protein; 97.3 0.023 5E-07 56.6 18.4 63 409-473 463-536 (557)
384 PHA02713 hypothetical protein; 97.3 0.018 3.8E-07 57.4 17.5 123 147-291 273-408 (557)
385 PF08553 VID27: VID27 cytoplas 97.3 0.0064 1.4E-07 61.4 14.1 149 281-470 492-647 (794)
386 KOG2395 Protein involved in va 97.2 0.0029 6.4E-08 58.9 10.2 147 284-471 348-501 (644)
387 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0019 4.1E-08 39.5 5.5 31 124-154 11-41 (47)
388 KOG4640 Anaphase-promoting com 97.1 0.0032 6.9E-08 60.0 9.5 92 229-326 22-115 (665)
389 KOG2444 WD40 repeat protein [G 97.1 0.0019 4.2E-08 53.6 6.9 107 238-348 69-179 (238)
390 COG3386 Gluconolactonase [Carb 97.1 0.23 5E-06 45.1 23.2 195 131-346 31-243 (307)
391 PF10647 Gmad1: Lipoprotein Lp 97.0 0.21 4.5E-06 44.2 20.2 147 126-292 25-187 (253)
392 PF05694 SBP56: 56kDa selenium 97.0 0.29 6.3E-06 45.6 23.4 203 135-350 86-346 (461)
393 KOG4499 Ca2+-binding protein R 97.0 0.048 1E-06 45.7 13.8 152 124-288 108-272 (310)
394 KOG2079 Vacuolar assembly/sort 96.9 0.044 9.4E-07 56.0 15.6 104 180-300 98-203 (1206)
395 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.42 9E-06 45.3 30.8 151 136-300 37-204 (418)
396 KOG4499 Ca2+-binding protein R 96.8 0.23 5E-06 41.8 17.9 42 409-450 222-263 (310)
397 PF05096 Glu_cyclase_2: Glutam 96.8 0.3 6.5E-06 42.6 24.4 184 230-458 47-249 (264)
398 PRK13616 lipoprotein LpqB; Pro 96.8 0.11 2.4E-06 51.8 17.6 102 229-342 351-472 (591)
399 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0072 1.6E-07 37.0 5.7 29 228-256 12-40 (47)
400 KOG2079 Vacuolar assembly/sort 96.7 0.0054 1.2E-07 62.2 8.0 101 135-250 98-198 (1206)
401 PF00780 CNH: CNH domain; Int 96.7 0.46 9.9E-06 42.8 20.7 153 134-300 5-165 (275)
402 PF15390 DUF4613: Domain of un 96.6 0.27 5.8E-06 47.3 17.7 158 122-300 17-186 (671)
403 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.38 8.3E-06 45.5 18.1 164 280-470 35-204 (418)
404 PF15390 DUF4613: Domain of un 96.5 0.29 6.4E-06 47.0 17.0 115 229-347 58-187 (671)
405 PHA03098 kelch-like protein; P 96.5 0.16 3.6E-06 50.7 16.7 189 134-347 293-512 (534)
406 COG3490 Uncharacterized protei 96.4 0.54 1.2E-05 40.9 20.4 102 230-335 70-180 (366)
407 TIGR03074 PQQ_membr_DH membran 96.3 1.7 3.7E-05 45.0 22.8 227 239-476 194-483 (764)
408 PRK10115 protease 2; Provision 96.2 1.8 3.8E-05 44.6 32.3 196 125-345 127-343 (686)
409 PF14870 PSII_BNR: Photosynthe 96.1 1.1 2.3E-05 40.6 24.6 190 126-337 63-253 (302)
410 PF05694 SBP56: 56kDa selenium 96.1 1.3 2.8E-05 41.5 19.1 189 130-334 135-391 (461)
411 PF05096 Glu_cyclase_2: Glutam 96.0 0.93 2E-05 39.6 23.7 184 125-336 45-250 (264)
412 KOG2377 Uncharacterized conser 96.0 0.19 4E-06 46.6 12.5 141 130-286 28-169 (657)
413 PHA03098 kelch-like protein; P 95.9 0.45 9.8E-06 47.6 16.5 59 238-300 294-366 (534)
414 PRK13684 Ycf48-like protein; P 95.8 1.4 3E-05 40.9 18.0 155 124-299 172-330 (334)
415 PRK10115 protease 2; Provision 95.7 3.1 6.6E-05 42.9 32.0 113 170-300 127-255 (686)
416 KOG2280 Vacuolar assembly/sort 95.7 0.24 5.3E-06 48.9 12.8 180 146-348 64-248 (829)
417 COG5276 Uncharacterized conser 95.7 1.4 3E-05 38.8 26.3 155 171-350 88-245 (370)
418 PF10313 DUF2415: Uncharacteri 95.6 0.077 1.7E-06 31.4 5.7 32 125-156 1-35 (43)
419 TIGR02604 Piru_Ver_Nterm putat 95.5 2.3 4.9E-05 40.2 22.1 145 171-337 15-204 (367)
420 PF10647 Gmad1: Lipoprotein Lp 95.5 1.6 3.6E-05 38.6 18.2 149 171-339 25-188 (253)
421 PF10168 Nup88: Nuclear pore c 95.4 2.5 5.4E-05 43.4 19.4 77 124-201 84-181 (717)
422 PHA02790 Kelch-like protein; P 95.3 0.85 1.8E-05 44.8 15.5 185 135-347 271-471 (480)
423 KOG2377 Uncharacterized conser 95.3 0.43 9.4E-06 44.3 12.2 102 228-335 67-172 (657)
424 PF12234 Rav1p_C: RAVE protein 95.1 0.65 1.4E-05 46.2 13.9 123 126-256 31-155 (631)
425 PF12234 Rav1p_C: RAVE protein 95.1 1.1 2.3E-05 44.8 15.3 113 232-346 34-156 (631)
426 PHA02790 Kelch-like protein; P 95.1 1.8 3.9E-05 42.6 17.2 103 180-300 271-384 (480)
427 PF08728 CRT10: CRT10; InterP 94.9 2.2 4.8E-05 43.1 16.9 163 136-299 49-245 (717)
428 KOG3630 Nuclear pore complex, 94.8 0.4 8.7E-06 49.7 11.7 150 171-334 102-261 (1405)
429 PF10168 Nup88: Nuclear pore c 94.8 5.6 0.00012 40.9 23.5 88 167-260 82-182 (717)
430 COG3823 Glutamine cyclotransfe 94.8 2.1 4.5E-05 35.7 15.6 178 238-458 55-247 (262)
431 PF13449 Phytase-like: Esteras 94.7 3.5 7.5E-05 38.2 17.5 120 124-247 19-166 (326)
432 TIGR02604 Piru_Ver_Nterm putat 94.6 3.3 7.2E-05 39.1 17.0 41 420-461 164-204 (367)
433 KOG3630 Nuclear pore complex, 94.4 0.56 1.2E-05 48.7 11.6 115 229-347 102-229 (1405)
434 KOG1983 Tomosyn and related SN 94.1 5 0.00011 43.1 18.4 33 123-155 34-66 (993)
435 PF10313 DUF2415: Uncharacteri 94.1 0.2 4.4E-06 29.7 4.7 31 270-300 1-33 (43)
436 COG5167 VID27 Protein involved 94.0 3.6 7.8E-05 39.2 14.9 144 180-348 478-634 (776)
437 PF08728 CRT10: CRT10; InterP 93.9 7.1 0.00015 39.6 17.9 115 229-345 102-245 (717)
438 TIGR03074 PQQ_membr_DH membran 93.9 9.5 0.00021 39.7 23.7 124 136-266 194-353 (764)
439 KOG1916 Nuclear protein, conta 93.5 0.073 1.6E-06 53.4 3.7 113 226-345 131-264 (1283)
440 COG5167 VID27 Protein involved 93.5 2.4 5.3E-05 40.3 13.0 150 280-472 477-634 (776)
441 PRK14131 N-acetylneuraminic ac 93.0 8.4 0.00018 36.5 19.9 40 249-290 189-230 (376)
442 PLN02193 nitrile-specifier pro 93.0 9.9 0.00021 37.3 18.1 149 135-300 175-351 (470)
443 COG3292 Predicted periplasmic 92.9 9.9 0.00021 37.0 19.5 151 123-298 163-316 (671)
444 KOG1983 Tomosyn and related SN 92.6 3.3 7.1E-05 44.4 14.3 33 229-261 37-69 (993)
445 PF14761 HPS3_N: Hermansky-Pud 92.6 4.7 0.0001 34.0 12.3 102 182-300 29-163 (215)
446 PF07569 Hira: TUP1-like enhan 92.5 0.94 2E-05 38.9 8.7 73 131-204 17-100 (219)
447 TIGR03548 mutarot_permut cycli 92.4 9 0.0002 35.4 16.4 138 135-291 72-233 (323)
448 KOG4460 Nuclear pore complex, 92.3 3.3 7.2E-05 39.6 12.2 87 170-261 104-202 (741)
449 TIGR03547 muta_rot_YjhT mutatr 92.1 10 0.00022 35.4 18.9 41 249-291 168-210 (346)
450 KOG1900 Nuclear pore complex, 92.1 2.8 6.1E-05 44.7 12.7 147 143-301 96-273 (1311)
451 PF07569 Hira: TUP1-like enhan 92.0 1.7 3.6E-05 37.4 9.6 82 177-262 18-100 (219)
452 TIGR03118 PEPCTERM_chp_1 conse 91.9 8.8 0.00019 34.3 22.9 224 229-475 24-284 (336)
453 KOG2247 WD40 repeat-containing 91.8 0.025 5.4E-07 52.6 -1.8 141 128-291 38-179 (615)
454 PLN02193 nitrile-specifier pro 91.8 14 0.0003 36.3 17.1 138 135-290 228-386 (470)
455 TIGR03118 PEPCTERM_chp_1 conse 91.8 9.2 0.0002 34.2 23.8 233 172-450 25-307 (336)
456 PRK13684 Ycf48-like protein; P 91.7 11 0.00024 35.0 28.9 276 124-469 45-330 (334)
457 PRK14131 N-acetylneuraminic ac 91.6 13 0.00027 35.3 16.6 53 238-291 84-149 (376)
458 KOG1916 Nuclear protein, conta 91.4 0.15 3.3E-06 51.2 2.8 65 408-473 193-268 (1283)
459 PLN02153 epithiospecifier prot 91.4 12 0.00027 34.8 19.0 114 135-262 32-172 (341)
460 TIGR02276 beta_rpt_yvtn 40-res 91.1 1.4 3.1E-05 25.9 6.1 40 408-448 1-41 (42)
461 PF03022 MRJP: Major royal jel 90.8 12 0.00026 33.8 21.1 205 126-334 2-253 (287)
462 KOG2280 Vacuolar assembly/sort 90.8 20 0.00044 36.2 17.8 192 249-452 64-271 (829)
463 PLN02153 epithiospecifier prot 89.8 17 0.00037 33.9 20.8 25 238-262 85-114 (341)
464 PF12768 Rax2: Cortical protei 89.7 15 0.00032 33.0 13.5 93 191-300 16-123 (281)
465 TIGR03547 muta_rot_YjhT mutatr 89.7 18 0.00038 33.9 17.1 23 134-156 62-95 (346)
466 PF12657 TFIIIC_delta: Transcr 89.5 2.9 6.2E-05 34.5 8.5 31 317-347 86-122 (173)
467 KOG2247 WD40 repeat-containing 89.4 0.048 1E-06 50.8 -2.2 143 172-338 37-180 (615)
468 smart00036 CNH Domain found in 89.2 17 0.00038 33.1 24.4 100 181-299 13-130 (302)
469 COG5276 Uncharacterized conser 89.0 16 0.00035 32.5 22.0 113 229-349 88-202 (370)
470 TIGR03606 non_repeat_PQQ dehyd 88.7 16 0.00035 35.3 13.8 107 128-249 33-167 (454)
471 TIGR03548 mutarot_permut cycli 88.4 21 0.00045 33.0 20.8 62 238-300 123-194 (323)
472 KOG1900 Nuclear pore complex, 88.1 6.2 0.00013 42.3 11.3 38 438-475 240-277 (1311)
473 PF05935 Arylsulfotrans: Aryls 88.1 28 0.00061 34.2 21.6 135 130-268 153-312 (477)
474 PF14781 BBS2_N: Ciliary BBSom 88.0 11 0.00023 29.2 14.3 113 129-263 3-131 (136)
475 PF07250 Glyoxal_oxid_N: Glyox 87.9 18 0.00038 31.7 12.4 86 251-337 48-138 (243)
476 PF07676 PD40: WD40-like Beta 87.9 2 4.3E-05 24.9 4.8 29 123-151 7-38 (39)
477 PF10214 Rrn6: RNA polymerase 87.7 40 0.00087 35.5 23.7 173 122-300 77-276 (765)
478 PF07250 Glyoxal_oxid_N: Glyox 87.5 9.8 0.00021 33.2 10.6 125 131-267 73-207 (243)
479 KOG3616 Selective LIM binding 87.2 32 0.00069 34.9 14.7 69 124-198 14-82 (1636)
480 PF14761 HPS3_N: Hermansky-Pud 87.0 18 0.00038 30.7 12.0 105 240-347 29-164 (215)
481 TIGR02276 beta_rpt_yvtn 40-res 87.0 4.4 9.5E-05 23.7 6.4 40 237-277 1-41 (42)
482 PF14781 BBS2_N: Ciliary BBSom 86.7 13 0.00028 28.8 13.1 121 322-473 4-128 (136)
483 COG1770 PtrB Protease II [Amin 86.6 38 0.00082 34.0 26.1 202 126-348 130-350 (682)
484 PF08801 Nucleoporin_N: Nup133 86.2 30 0.00065 33.4 14.6 173 229-473 28-222 (422)
485 PF02333 Phytase: Phytase; In 86.1 30 0.00065 32.5 23.5 152 179-347 66-238 (381)
486 PF11715 Nup160: Nucleoporin N 85.8 4.5 9.8E-05 40.7 9.0 74 134-207 156-256 (547)
487 PF13449 Phytase-like: Esteras 85.6 30 0.00065 32.0 17.3 156 171-333 21-231 (326)
488 PF12657 TFIIIC_delta: Transcr 85.4 6.4 0.00014 32.4 8.3 30 229-258 87-122 (173)
489 PF07676 PD40: WD40-like Beta 85.2 4.4 9.6E-05 23.3 5.3 30 438-467 6-38 (39)
490 PF11715 Nup160: Nucleoporin N 85.1 5.7 0.00012 39.9 9.4 87 179-265 156-256 (547)
491 COG4590 ABC-type uncharacteriz 84.9 6.8 0.00015 36.9 8.6 163 170-350 221-390 (733)
492 COG4257 Vgb Streptogramin lyas 84.7 27 0.0006 30.8 18.0 191 124-347 103-306 (353)
493 COG3823 Glutamine cyclotransfe 84.5 23 0.00051 29.8 13.7 172 135-334 55-247 (262)
494 COG4257 Vgb Streptogramin lyas 84.3 29 0.00062 30.7 19.6 194 124-347 61-263 (353)
495 PF03022 MRJP: Major royal jel 83.0 36 0.00078 30.8 16.0 54 405-458 192-253 (287)
496 PF12768 Rax2: Cortical protei 82.9 35 0.00076 30.7 14.2 119 145-278 15-145 (281)
497 smart00564 PQQ beta-propeller 82.3 4 8.7E-05 22.4 4.1 26 411-436 7-32 (33)
498 COG5290 IkappaB kinase complex 82.1 65 0.0014 33.1 15.0 298 99-466 86-439 (1243)
499 PRK13615 lipoprotein LpqB; Pro 81.2 63 0.0014 32.4 19.8 151 128-300 337-502 (557)
500 COG4590 ABC-type uncharacteriz 81.1 7.1 0.00015 36.7 7.3 167 119-300 215-386 (733)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-52 Score=356.09 Aligned_cols=298 Identities=25% Similarity=0.372 Sum_probs=263.2
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
++...+.+|.++|.|++|+|+|+.||+|+.|.++|+||+.+..+. ...++|...|.|++|+|||+.||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 445678999999999999999999999999999999999987443 35578888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
+||.++|+.... ...+|+..|++++|.| ..++||+++.||.|+|||+..+.++..+.+|+
T Consensus 183 lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 183 LWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred EecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 999998876432 2347899999999976 56799999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc-----------CCCC---------
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-----------GDGR--------- 329 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~--------- 329 (491)
.+|+|+.|- ...+|++|+.|++|++|+.. .+.....+.+|...|+.++.+ |.++
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~----dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRAL----DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEcc----chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 999999994 56799999999999999987 788999999999999999876 2233
Q ss_pred ----------------EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 330 ----------------YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 330 ----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
.|++|+.|.++.+|+..... +++....+|..
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------------------kpi~rmtgHq~ 368 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------------------KPITRMTGHQA 368 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------------------------------cchhhhhchhh
Confidence 49999999999999976532 56667777774
Q ss_pred eEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.. ....||||+++||+++.|..|++||..+|+.+..|++|-++|..++|+.|.++|++|+.|.++++|++...+
T Consensus 369 lV------n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 369 LV------NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred he------eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 33 333788899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 011179 474 EA 475 (491)
Q Consensus 474 ~~ 475 (491)
..
T Consensus 443 l~ 444 (480)
T KOG0271|consen 443 LK 444 (480)
T ss_pred ec
Confidence 43
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-50 Score=330.47 Aligned_cols=296 Identities=22% Similarity=0.363 Sum_probs=263.6
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...|.+|.+.|+++.|++|+++|++++.||.+.|||.-+..+.+.+..... .|..++|+|.|+++|+|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~---WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---WVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce---eEEEEEECCCCCeEEecCcCceeEEE
Confidence 477899999999999999999999999999999999998877776554443 79999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
++.+........+.. ...+|++-+.|+.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus 125 ~ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred ecccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 998653332222221 234789999999999866 599999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++|.+++.+++|+-|+..++||+| .+.+++.+.+|...|+++.|.|+|.-|++|+.|+++++||+|.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence 986599999999999999999999 8899999999999999999999999999999999999999998
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
++.+..|........+..+ +||..|++|++|..|.++.+||.-.++.+..+
T Consensus 261 -------------------------D~~~a~ys~~~~~~gitSv----~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -------------------------DQELAVYSHDSIICGITSV----AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -------------------------CcEEeeeccCcccCCceeE----EEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 6777777765554455444 55568999999999999999999999999999
Q ss_pred ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 437 ~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
.+|.+.|.++..+|||..|+||++|.+++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-50 Score=338.92 Aligned_cols=327 Identities=24% Similarity=0.357 Sum_probs=277.2
Q ss_pred cchhhhhhhhhcCC-----CCCCccccc---cccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 011179 80 VSTVKMLAGREGNY-----SGRGRFSAA---DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIY 151 (491)
Q Consensus 80 ~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iw 151 (491)
.++...++|+++.+ ++.+..-.. +....+++.-...+.+...+|..-|.|++|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 34445566665544 232222222 2333345555556667889999999999999999999999999999999
Q ss_pred ECCCCeEEEEEeecCCCceeEEEEEECC-----CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCc
Q 011179 152 DVERGWKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 152 d~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
|..+|+.+.. ...+|...|++++|.| ..++||+++.||.|+|||+..+.+.... .||
T Consensus 185 dpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l----------------sgH 246 (480)
T KOG0271|consen 185 DPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL----------------SGH 246 (480)
T ss_pred cCCCCCcccc--cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe----------------ccC
Confidence 9999976665 4578888999999976 5689999999999999999988765443 379
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec----------C----------------
Q 011179 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD----------E---------------- 280 (491)
Q Consensus 227 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----------~---------------- 280 (491)
+.+|+|++|--+| +|++|+.|++|++|+...|++.+.+++|...|+.++.+. +
T Consensus 247 T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 247 TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 9999999998666 799999999999999999999999999999999998761 1
Q ss_pred ---------CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 281 ---------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 281 ---------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
.+..+++|++|.++.+|+.. ...+++..+.+|..-|+.+.|+||++++|+++.|..|++||-++
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t---- 398 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT---- 398 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC----
Confidence 23459999999999999976 35568889999999999999999999999999999999999998
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
++.+.+|+||-.. .+..+||.|.++|++|+.|.++++||+++.+
T Consensus 399 ------------------------------Gk~lasfRGHv~~------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 399 ------------------------------GKFLASFRGHVAA------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred ------------------------------cchhhhhhhccce------eEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 5778888888743 3445788899999999999999999999999
Q ss_pred EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 432 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
....+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.5e-49 Score=338.36 Aligned_cols=285 Identities=23% Similarity=0.305 Sum_probs=256.6
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeEEEEEC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~iw~~ 198 (491)
-+-..+|..+.||+|++.||||+.+|.++||+..+...+ ....+|...|.++.|+|. +..||+++.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 355789999999999999999999999999999987443 455789999999999997 568999999999999999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 278 (491)
.+...... ..+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~----------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 249 SQETPLQD----------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred CCCcchhh----------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 87654332 23688899999999999999999999999999999999988889999999999997
Q ss_pred cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCC
Q 011179 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
++|.++++|+.|..-+|||+| ++.++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..
T Consensus 313 -~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------- 377 (459)
T KOG0272|consen 313 -PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------- 377 (459)
T ss_pred -CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc----------
Confidence 899999999999999999999 99999999999999999999999999999999999999999983
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 438 (491)
..+.++.+|....+- +.|+|. .|.+|++++.|++++||...+..+++.+.+
T Consensus 378 ------------------------~~ly~ipAH~nlVS~--Vk~~p~---~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 378 ------------------------SELYTIPAHSNLVSQ--VKYSPQ---EGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred ------------------------ccceecccccchhhh--eEeccc---CCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 456677777754433 333332 789999999999999999999999999999
Q ss_pred CCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 439 h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
|.+.|.+++++||+.+++|++.|.++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999996
No 5
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-43 Score=300.84 Aligned_cols=306 Identities=26% Similarity=0.401 Sum_probs=263.3
Q ss_pred ccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
..+.+|.+..+.++.|.+.|+-+.||++|++||+++.|.+..+|.+.....+.......+|..+|..+.||||.++|+++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 44667888889999999999999999999999999999999999987766666566677888899999999999999999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
+.+..+.+||+.+|........ +|...+.+++|.|||..+++|+.|+.+..||++... .....+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g 351 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG 351 (519)
T ss_pred CchHheeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc
Confidence 9999999999999987655432 234589999999999999999999999999997654 333333
Q ss_pred c-CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 268 H-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
- ...|.+++.. ++|.++++.+.|..|++++.. ...... +.....+|+++..|.+++++++.-.+..+++||+.
T Consensus 352 vr~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 352 VRDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 2 3568999997 889999999999999999986 322222 33456789999999999999999999999999998
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 426 (491)
. ...+..+.||.....+++.+|.-- +..++++|++|+.|+||+
T Consensus 426 e----------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 426 E----------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWH 468 (519)
T ss_pred h----------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEE
Confidence 6 466778889988888888877654 668999999999999999
Q ss_pred CCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCC
Q 011179 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~ 472 (491)
..+|+++..+.+|...|++++|+|..+ ++|++++||+|+||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999776 9999999999999987654
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-41 Score=277.96 Aligned_cols=295 Identities=25% Similarity=0.391 Sum_probs=253.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++... ........+|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3466899999999999999999999999999999997654 22233456899999999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|+++|+.....+ +|..-|.++.-+.-|. ++.+++.|+++++||+++...++.+ ...-+++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEE
Confidence 999998765543 4666788887555444 6677889999999999998887766 446689999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
.|. ..+..+++|+-|+.|++||++ .......+.+|.++|+.+..+|+|.++.+.+.|.++++||++....
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----- 250 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----- 250 (338)
T ss_pred Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----
Confidence 997 778889999999999999999 8889999999999999999999999999999999999999987432
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc--eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
....+..+.++. .....+.+. |||++..+.+|+.|..+++||..+...+
T Consensus 251 -------------------------~~R~v~if~g~~hnfeknlL~cs----wsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 251 -------------------------SQRCVKIFQGHIHNFEKNLLKCS----WSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred -------------------------CCceEEEeecchhhhhhhcceee----ccCCCCccccccccceEEEeecccccEE
Confidence 235577777764 344555554 5569999999999999999999998999
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
..+.+|.+.|++++|+|..++|.+++.|.+|++=++
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999999999999987443
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.4e-41 Score=269.26 Aligned_cols=283 Identities=22% Similarity=0.329 Sum_probs=234.8
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 216 (491)
-+|++++.|.+||+|...+|.....+.... +.|+.+...|+++.||+++ ...|++||+.++....+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~------- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF------- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE-------
Confidence 479999999999999999998887765444 3799999999999999887 47899999998876544433
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEE
Q 011179 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~i 296 (491)
.+|+..|+++.|..+|+.+++|++||+++|||++...+.+.+ .|..+|+++..+ |+...|++|..+|.|++
T Consensus 80 -------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlh-pnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 80 -------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLH-PNQTELISGDQSGNIRV 150 (311)
T ss_pred -------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEec-CCcceEEeecCCCcEEE
Confidence 257778999999999999999999999999999997665555 778999999997 77778899999999999
Q ss_pred EecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 297 WDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
||+. ...+...+ ......|.++...|||.+++.+...|.+++|++-.......
T Consensus 151 WDl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~---------------------- 204 (311)
T KOG0315|consen 151 WDLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE---------------------- 204 (311)
T ss_pred EEcc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc----------------------
Confidence 9998 44333333 33446899999999999999999999999999977332211
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEeeccCCCCeeeeEecCCCCe
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM 454 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~ 454 (491)
-.++..++.|. ..+.+|. +|||+++||+++.|.+++||+..+. +....+++|...+++++||.||+|
T Consensus 205 ------l~P~~k~~ah~--~~il~C~----lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 205 ------LEPVHKFQAHN--GHILRCL----LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEY 272 (311)
T ss_pred ------ceEhhheeccc--ceEEEEE----ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccE
Confidence 14556677776 3444554 5669999999999999999999887 666778899999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCCCCC
Q 011179 455 LVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 455 l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
|+||+.|+.+++|+++.+++...
T Consensus 273 lvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred EEecCCCCceeecccccCceeee
Confidence 99999999999999999886543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-40 Score=270.89 Aligned_cols=291 Identities=20% Similarity=0.272 Sum_probs=236.2
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
-.+.+|++.|..++..+.+ ..|.+++.|.++.+|++...... .......+|...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 4578999999999999985 57889999999999998764211 11223456777999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCee
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 273 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~ 273 (491)
+||+.+++....+. ||...|.+++|++|.+.+++|+.|.+|.+|+............ +.+.|+
T Consensus 89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 99999986544332 6888999999999999999999999999999876655444333 378999
Q ss_pred EEEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 274 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 274 ~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
|++|+|.. ..+|++++.|++|++||++ ..+....+.+|++.++.++++|||.++++|+.||.+.+||++..
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---- 224 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---- 224 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----
Confidence 99999543 6799999999999999998 77888889999999999999999999999999999999999983
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
+.+..+.+.. . ..+.+|+|+.-.|+.+. +..|+|||+.++.+
T Consensus 225 ------------------------------k~lysl~a~~---~----v~sl~fspnrywL~~at-~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 225 ------------------------------KNLYSLEAFD---I----VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAV 266 (315)
T ss_pred ------------------------------ceeEeccCCC---e----EeeEEecCCceeEeecc-CCceEEEeccchhh
Confidence 3344443333 2 23345666666665554 45599999999988
Q ss_pred EEeecc----C-----CCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 433 VAALKY----H-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 433 ~~~~~~----h-----~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+..++. . .....+++|++||..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877642 1 2335678999999999999999999999875
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=267.69 Aligned_cols=292 Identities=22% Similarity=0.323 Sum_probs=239.2
Q ss_pred CccccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
.+.+.+|.+++..++|+|- |..||+|+.|+.|+||+...+ .-..+.....+|+..|..++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4677899999999999998 899999999999999999843 23344445568888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEEeccCCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD 271 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~ 271 (491)
||.-..++...+.. ..||...|.+++|+++|++||+++.|..|.||.+..+ ++...+..|...
T Consensus 87 Iw~k~~~efecv~~--------------lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 87 IWKKEDGEFECVAT--------------LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeecCCCceeEEee--------------eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99987766544332 2368889999999999999999999999999998744 467788899999
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
|..+.|+ |...+|++++.|.+|++|+-.. .....++..+.+|...|.+++|+|.|..|++++.|++++||.+...-..
T Consensus 153 VK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 153 VKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG 230 (312)
T ss_pred ccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence 9999997 7788999999999999998653 3467889999999999999999999999999999999999986531100
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG- 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~- 430 (491)
-|. .. .+...|. ...|++++.|+.|++|.-...
T Consensus 231 --------------------------------------~~s--r~----~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 231 --------------------------------------MHS--RA----LYDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred --------------------------------------hcc--cc----eEeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 010 11 1222232 457999999999999986542
Q ss_pred -----cEE-EeeccCCCCeeeeEecCC-CCeEEEEeCCCcEEEEcCC
Q 011179 431 -----EQV-AALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 431 -----~~~-~~~~~h~~~v~~~~~sp~-~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.+ ..-..|...|+++.|+|. ..+|+++++||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111 123478999999999995 5699999999999999874
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.3e-42 Score=293.59 Aligned_cols=290 Identities=22% Similarity=0.381 Sum_probs=251.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.-+.+|..+.|.|+|+.|++|+..|.+.+|+..+ .........|..+|.++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3467899999999999999999999999999743 3333455788899999999999999999999999999997655
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
....... .|...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+ |.
T Consensus 171 nVk~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~ 233 (464)
T KOG0284|consen 171 NVKIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PT 233 (464)
T ss_pred hhHHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cc
Confidence 4432221 244589999999999999999999999999999998888899999999999997 77
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
..+|++|+.|..|++||.+ .+.++..+.+|...|..+.|+|++++|++++.|..++++|++++
T Consensus 234 kgLiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------- 296 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------- 296 (464)
T ss_pred cceeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-------------
Confidence 8899999999999999999 89999999999999999999999999999999999999999974
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee-ccCC
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHT 440 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~ 440 (491)
..+.++++|. ..+....|.|. ...+|.+|+.||.|..|.+...+++..+ .+|.
T Consensus 297 ---------------------kEl~~~r~Hk--kdv~~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd 350 (464)
T KOG0284|consen 297 ---------------------KELFTYRGHK--KDVTSLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHD 350 (464)
T ss_pred ---------------------HHHHHhhcch--hhheeeccccc---cccceeeccCCCceEEEeccccccccCCCcccc
Confidence 4566677777 34445556665 5778999999999999999866666665 4899
Q ss_pred CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
..|++++|+|-|.+|++|+.|.++++|.-....+
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 9999999999999999999999999998655443
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-40 Score=287.73 Aligned_cols=306 Identities=21% Similarity=0.297 Sum_probs=251.3
Q ss_pred CCCCCCccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCC-eEEEE-Ee---------ecCCCceeEEEEEECC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG-WKIQK-DI---------LAKSLRWTVTDTSLSP 179 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~-~~~~~-~~---------~~~~~~~~v~~~~~sp 179 (491)
+|......+. |+.+|.+.+|+|-.. .|++|+.|-+.++|++... ..... .. ........|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4444444555 999999999999776 8999999999999998751 00000 00 0111224699999999
Q ss_pred CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
+|..||+|+.||.+++|+........+ ..|+++|.++.|+.+|.+|++++.|+++.+||..++
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl-----------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTL-----------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhh-----------------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 999999999999999999876544322 247789999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
.....+.-|..+-..+.|- +..-|++++.|+.|+|+.+. ...|+.++.+|.+.|.++.|.|.|.+|++++.|++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 9999998999888889994 56789999999999999997 78899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc----c-cCCCcEEE
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----Y-STGQKYIY 414 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-s~~~~~l~ 414 (491)
++||.... ...+..+.+|... +....|+|. . ...+..++
T Consensus 383 lkiWs~~~----------------------------------~~~~~~l~~Hske--i~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 383 LKIWSMGQ----------------------------------SNSVHDLQAHSKE--IYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred eEeeecCC----------------------------------Ccchhhhhhhccc--eeeEeecCCCCccCCCcCCceEE
Confidence 99999876 2445555566522 222233332 1 12456899
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
+++.|++|++||+..+.+++.|..|..+|.+++|+|+|++||+|+.||.|.+|+...+.....
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 999999999999999999999999999999999999999999999999999999988765433
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-42 Score=294.52 Aligned_cols=251 Identities=22% Similarity=0.318 Sum_probs=225.4
Q ss_pred CCCCCCccccCCCCceEEEEEcCC--CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~d--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (491)
...+..+.+.+|.+.|.++.|+|. +..+|+|+.||++++|++++...+. ...+|...|..++|+|+|++|++++.
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCceeeeccc
Confidence 344556889999999999999997 5689999999999999999864444 44678789999999999999999999
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
|.+-++||+.++...... .||..+|.+++|.+||..+++|+.|..-+|||++++.++..+.+|.
T Consensus 282 D~tWRlWD~~tk~ElL~Q----------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 282 DSTWRLWDLETKSELLLQ----------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred ccchhhcccccchhhHhh----------------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence 999999999988754332 3799999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.+|.+++|+ |+|..||+|+.|++++|||++ ....+..+.+|.+-|+.+.|+| .|.+|++++.|++++||.-++
T Consensus 346 k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~- 419 (459)
T KOG0272|consen 346 KEILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT- 419 (459)
T ss_pred cceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC-
Confidence 999999998 899999999999999999999 7777999999999999999999 789999999999999999988
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 426 (491)
.+++.++.||... +++..+++|+.++++++.|.++++|.
T Consensus 420 ---------------------------------~~~~ksLaGHe~k------V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 ---------------------------------WSPLKSLAGHEGK------VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------cccchhhcCCccc------eEEEEeccCCceEEEeccCceeeecc
Confidence 5778888899832 24447778999999999999999995
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-40 Score=278.13 Aligned_cols=291 Identities=23% Similarity=0.298 Sum_probs=262.0
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
+.++.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++. .....+|...+.+++|+..|++|++++.|-.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 66788899999999999999999999999999999999999865 335578888999999999999999999999999
Q ss_pred EEECCCC-ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 195 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 195 iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
+||.++. ++.+ ...+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|.
T Consensus 176 LWd~~~~~~c~k----------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 176 LWDFDTFFRCIK----------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred heeHHHHHHHHH----------------HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 9998763 1111 1225677899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC---------------CCEEEEeeCCC
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQ 338 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~s~~~dg 338 (491)
.+..+ .+|.++++++.|.++++|-+. ...+...+..|..+|.+++|.|. ++++.+++.|+
T Consensus 240 ~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 240 MVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99997 899999999999999999997 77788889999999999999763 35899999999
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
+|++||+.+ +..+.++.+|..... ..+|+|.|+||+++..
T Consensus 315 tIk~wdv~t----------------------------------g~cL~tL~ghdnwVr------~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 315 TIKIWDVST----------------------------------GMCLFTLVGHDNWVR------GVAFSPGGKYILSCAD 354 (406)
T ss_pred eEEEEeccC----------------------------------CeEEEEEecccceee------eeEEcCCCeEEEEEec
Confidence 999999998 578899999985433 3378889999999999
Q ss_pred CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
|+++++||++++++...+..|..-|+++.|+.+..+++||+-|..+++|+-
T Consensus 355 Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999974
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.3e-41 Score=295.43 Aligned_cols=299 Identities=21% Similarity=0.361 Sum_probs=256.5
Q ss_pred ccCCCCCCccccCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 110 RYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
-++|......+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +..+ ....+|..+|.+++|+++|..++++
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l---rtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL---RTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee---hhhhcchhhhhhhhccccCCeeeee
Confidence 3567777889999999999999999 899999999999999999977 3333 3557888899999999999999999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
+.|+.|++||+++|++...+.... .++|+.|+||+ +.+++|+.|+.|+.||+++++.++.+.
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred ecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 999999999999999876655433 68999999998 889999999999999999999999999
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
.|-+.|..+.|. +++..+++.+.|++++||+.+ ...++... ..+.....++..+|++.+++.-+.|+.|.++.+
T Consensus 340 ~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 340 RHLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred hhhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 999999999997 889999999999999999987 44433322 223345678999999999999999999999987
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 425 (491)
..... ...-..|++|........+ .|||||++|++|..||.+.+|
T Consensus 415 ~~~~r-------------------------------~nkkK~feGh~vaGys~~v----~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 415 VPPFR-------------------------------LNKKKRFEGHSVAGYSCQV----DFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred ccccc-------------------------------cCHhhhhcceeccCceeeE----EEcCCCCeEEeecCCccEEEe
Confidence 54221 1334567777765555444 566699999999999999999
Q ss_pred ECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEc
Q 011179 426 DLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 468 (491)
Q Consensus 426 d~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~ 468 (491)
|.++-+.+..+++|.+++..+.|+|... .+||+++||.|++|+
T Consensus 460 dwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 460 DWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred echhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999776 899999999999997
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=308.90 Aligned_cols=290 Identities=33% Similarity=0.529 Sum_probs=254.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC-CC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS 200 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~-~~ 200 (491)
.|...|.|+.|+++|++|++++.++.+++|+....+. .......+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3488999999999999999999999999999976642 122233678889999999999999999999999999999 33
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
+...... .+|...|++++|+|+++++++|+.|++|+|||++++++...+.+|...|++++|+ +
T Consensus 236 ~~~~~~l----------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~ 298 (456)
T KOG0266|consen 236 GRNLKTL----------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P 298 (456)
T ss_pred CeEEEEe----------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence 3443332 2688899999999999999999999999999999999999999999999999996 8
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCc--eeeEeccccCc--EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++++|++++.|+.|++||+. .+. ++..+.++... ++++.|+|++.++++++.|+.+++||++.
T Consensus 299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--------- 365 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--------- 365 (456)
T ss_pred CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---------
Confidence 99999999999999999998 555 45666666555 99999999999999999999999999997
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
...+..+.+|... ..+.+++..++++.++++|+.|+.|++||+.++..+..+
T Consensus 366 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 366 -------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred -------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 4566777777754 256777788899999999999999999999999999999
Q ss_pred ccC-CCCeeeeEecCCCCeEEEEe--CCCcEEEEcCC
Q 011179 437 KYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 470 (491)
Q Consensus 437 ~~h-~~~v~~~~~sp~~~~l~s~~--~Dg~v~iw~~~ 470 (491)
.+| ...+..++|+|..+++++++ .|+.+++|...
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999865
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-39 Score=280.61 Aligned_cols=280 Identities=20% Similarity=0.351 Sum_probs=247.2
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...|++++|+.+|.+||+|+.||.++||+...+ .......|+++|.++.|+..|.||++++.|+++.+||..+++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 357999999999999999999999999998764 3345678899999999999999999999999999999999887
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
.....+. ..+-.++.|-.+. .+++.+.|+.|+|+.+....++.++.+|.+.|.++.|+ |.+.
T Consensus 311 ~q~f~~~----------------s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~ 372 (524)
T KOG0273|consen 311 KQQFEFH----------------SAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGS 372 (524)
T ss_pred EEeeeec----------------cCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCc
Confidence 6655432 2244667887554 59999999999999999999999999999999999997 8899
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---------RYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+|++++.|++++||... .......+.+|...|..+.|+|+| ..+++++.|++|++||+..
T Consensus 373 LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------- 441 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------- 441 (524)
T ss_pred eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------
Confidence 99999999999999987 778888999999999999999965 4689999999999999988
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
+.++.+|..|... +++++|||+|+|+|+|+.||.|.+|++++++.++
T Consensus 442 ---------------------------gv~i~~f~kH~~p------VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 442 ---------------------------GVPIHTLMKHQEP------VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ---------------------------CceeEeeccCCCc------eEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 5778888777733 3455788899999999999999999999999999
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
.+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9874 4569999999999999999999999998874
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-40 Score=306.88 Aligned_cols=289 Identities=25% Similarity=0.395 Sum_probs=238.4
Q ss_pred cCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC
Q 011179 111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (491)
.+|.-.-..+..-...++|..|++|++.||.|..|..|++|.+... ++.++ +. ..+ -..+=+.+.|
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~---l~~~d~~sad 430 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASD---LSNIDTESAD 430 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhh---hccccccccc
Confidence 3344444455566678899999999999999999999999998753 22211 11 111 1112223333
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 270 (491)
-.+.+.|-.++.... ...||.++|....|+|+.++|++++.|+++++|.+.+..++..+.+|..
T Consensus 431 ~~~~~~D~~~~~~~~----------------~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~ 494 (707)
T KOG0263|consen 431 VDVDMLDDDSSGTSR----------------TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA 494 (707)
T ss_pred hhhhhccccCCceeE----------------EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc
Confidence 334444443332211 1237999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
+|.++.|+ |.|.+||+++.|++.++|... ...+++.+.+|.+.|.|+.|+|+..++++||.|.++++||+.+
T Consensus 495 PVwdV~F~-P~GyYFatas~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--- 566 (707)
T KOG0263|consen 495 PVWDVQFA-PRGYYFATASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--- 566 (707)
T ss_pred ceeeEEec-CCceEEEecCCCceeeeeecc----cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC---
Confidence 99999998 889999999999999999987 7889999999999999999999999999999999999999998
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
+..++.|.||...... ++|||+|++|++|+.||.|.+||+.++
T Consensus 567 -------------------------------G~~VRiF~GH~~~V~a------l~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 567 -------------------------------GNSVRIFTGHKGPVTA------LAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred -------------------------------CcEEEEecCCCCceEE------EEEcCCCceEeecccCCcEEEEEcCCC
Confidence 6789999999844333 367779999999999999999999999
Q ss_pred cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 431 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 431 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+++..+.+|.+.|.++.|+.||..||+|+.|..|++||+.....
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999999999999999876543
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-38 Score=265.43 Aligned_cols=291 Identities=17% Similarity=0.247 Sum_probs=248.4
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
+.-..+.+|.+-|.|+++.|-..+|++|+.|++|+|||+.+|... ....+|-..|..+++|+-..||++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 333566899999999999999999999999999999999999433 34467888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
.||++..+.++... ||-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..
T Consensus 219 CwDLe~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred EEechhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 99999887755432 68889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+.+. +-+..+++|+.|++|++||++ .++....+..|...|.+++.+|....+|+++.| .|+-|++..
T Consensus 283 V~~~-~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~------- 349 (460)
T KOG0285|consen 283 VMCQ-PTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPE------- 349 (460)
T ss_pred EEee-cCCCceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCc-------
Confidence 9997 445578899999999999999 889999999999999999999999999999888 489999876
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
+..+..+.+|......+.. . +..++++|+.+|.+.+||.++|-..+
T Consensus 350 ---------------------------g~f~~nlsgh~~iintl~~------n-sD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 350 ---------------------------GEFLQNLSGHNAIINTLSV------N-SDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred ---------------------------cchhhccccccceeeeeee------c-cCceEEEcCCceEEEEEecCcCcccc
Confidence 3444556666644433321 2 34688999999999999999986554
Q ss_pred eec--------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 435 ALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 435 ~~~--------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.++ ..+..|.+.+|...|..|+||..|.+|++|.-..
T Consensus 396 ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 396 RGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 442 1345789999999999999999999999997544
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-37 Score=274.80 Aligned_cols=328 Identities=19% Similarity=0.242 Sum_probs=254.9
Q ss_pred ccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
...-.|-+-...++.|..-|+|+.|+|||+++|+++.||+|.+||-.+|+.+..+.....|.+.|.+++|+||++.++++
T Consensus 174 ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred EeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 33445555556778999999999999999999999999999999999999998887788999999999999999999999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccc---------------------------cccCCCCceecEEEEEEcCCCC
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDF---------------------------SAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~h~~~i~~~~~s~~~~ 240 (491)
+.|.+++|||+.+.++.....+....+.... ......||...|+++..++|++
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 9999999999998877655544332111000 1122358999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC--------ce---
Q 011179 241 ELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--------KP--- 308 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~--- 308 (491)
+|++|+.||.|.-||..++..-+.. ..|...|.+++-+ +...+++.+.|.++++.++....... ++
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred EEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 9999999999999999998765433 5799999999985 33567788899999999774211110 01
Q ss_pred ----------------eeEeccc--------cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceee
Q 011179 309 ----------------AGVLMGH--------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 309 ----------------~~~~~~~--------~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+..+..+ .-...+++++|++..+++|+.|+.|+||.+......
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~------------- 478 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK------------- 478 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-------------
Confidence 1111111 113467889999999999999999999999874321
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE-eeccCCCCe
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPV 443 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v 443 (491)
.......|....+ ..+||||+.|||+|...+.+.+||+.+.+... ....|...|
T Consensus 479 -------------------ee~~~~~h~a~iT------~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 479 -------------------EEAKLLEHRAAIT------DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred -------------------ceeeeecccCCce------EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 1112233332222 33788899999999999999999999887632 334699999
Q ss_pred eeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 444 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 444 ~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+++|+|+..++|||+.|-.|.||++..+...
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99999999999999999999999999877654
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-36 Score=277.71 Aligned_cols=287 Identities=31% Similarity=0.476 Sum_probs=243.5
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+|.++|++++|+|++++|++++.||.|++|++.++..... ...|...+..+.|+|++++|++++.++.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 45678999999999999999999999999999999988753333 345566788999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764322221 24457999999999888888888999999999999888888889999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+ +++.++++++.|+.|++||++ ..+.+..+..|...+.++.|+|+++.+++++.++.|++||++..
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------- 209 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------- 209 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------
Confidence 7 668888888889999999997 66777788888889999999999999999999999999999862
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 437 (491)
..+..+..+.. .+ ..+.++|++.++++++.||.|++||+.+++.+..+.
T Consensus 210 -------------------------~~~~~~~~~~~--~i----~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 210 -------------------------KCLGTLRGHEN--GV----NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -------------------------ceecchhhcCC--ce----EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33333433332 12 233566688888888889999999999999999999
Q ss_pred cCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
.|...|.+++|+|++++|++++.||.|++|+
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999996
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-37 Score=261.01 Aligned_cols=324 Identities=17% Similarity=0.187 Sum_probs=236.2
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
....+..|...|++++.+|+.+++|||+.|..-.+|+..++... ....+|+..|+++.|+.+|.+||+|..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 35678999999999999999999999999999999999999633 345788889999999999999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|+..++.......- -...|.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=
T Consensus 133 ~~~stg~~~~~~~~----------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQ----------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEeec----------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 99998876544320 11167889999999999999999999999999988888899999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc-cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC----
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS---- 350 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 350 (491)
.|. |+|+.++++..||+|++|++. ++.++..+... ....+++.++..+..++.|+.++.+++-+..+++.
T Consensus 197 ~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 197 EFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 998 779999999999999999997 66666555421 12234444444444444444444444433322110
Q ss_pred ---cccccCCCccceeeeeeecCCCCCccccCCC-C----------ceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 351 ---NASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 351 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
..............+..+++.......+... + ..++..-.|. ..++++.|- + ..+|+++
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~----~-t~~l~t~ 344 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE--DGVTKLKWL----N-TDYLLTA 344 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC--CceEEEEEc----C-cchheee
Confidence 0111111111111111111111111111110 1 1122222232 123344333 2 5789999
Q ss_pred ecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.+|.|+.||.++|+++..+.+|...|.+++++|+.++++|++.|++.+|++++
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999999999999999999875
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-36 Score=311.60 Aligned_cols=295 Identities=20% Similarity=0.348 Sum_probs=234.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i 193 (491)
.+..|.+.|.+++|+|+|++||+|+.|+.|+||++... ...........+...|.+++|+|. +.+|++++.||+|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45669999999999999999999999999999997542 110000011122347899999874 7899999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
++||+.+++..... .+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+
T Consensus 558 ~lWd~~~~~~~~~~----------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 558 QVWDVARSQLVTEM----------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEECCCCeEEEEe----------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999877643322 24777999999997 7889999999999999999999888877654 689
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc-eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
.++.|+++++.+|++|+.||.|++||++ ... ++..+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 9999977789999999999999999997 333 566778999999999997 6789999999999999999753210
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
. ....+..+.+|...... ..++|++.+|++|+.|+.|++|+.....
T Consensus 696 ~----------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 696 I----------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred c----------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 02456677777643332 2567789999999999999999987654
Q ss_pred EEEee-------------ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 432 QVAAL-------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 432 ~~~~~-------------~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+..+ ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 43222 234567999999999999999999999999996
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-37 Score=245.25 Aligned_cols=290 Identities=22% Similarity=0.363 Sum_probs=252.7
Q ss_pred CCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
+|+.....+..|+++|.++.|+-||+|.++++.|.+|++|+...|..++. ..+|...|..++.+.|+..+++++.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCc
Confidence 46666778899999999999999999999999999999999999866654 356777899999999999999999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEeccC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT 269 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~ 269 (491)
.+.+||+.+|+....+. +|.+.|+.++|+.+...+++|+.|.++++||-++. ++++.+....
T Consensus 82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999999866543 78889999999999999999999999999998764 5677777788
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
..|.++..+ +..|++|+.||++|.||++ .+.......+ .+|+++.|+++++..+.++.|+++++.|-.+
T Consensus 146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t-- 214 (307)
T KOG0316|consen 146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET-- 214 (307)
T ss_pred CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch--
Confidence 899999885 6789999999999999999 6666555544 6899999999999999999999999999988
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
++.+..+++|.....-..|++.- ....+++|++||.|++||+..
T Consensus 215 --------------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 --------------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred --------------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecc
Confidence 57788889998877777776554 567899999999999999999
Q ss_pred CcEEEeeccCCCC-eeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 430 GEQVAALKYHTSP-VRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
...+..+..|... |.+++++|.-..|+++.. +.+..|.
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 9999999988877 899999999887887764 4456664
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-37 Score=247.49 Aligned_cols=279 Identities=18% Similarity=0.257 Sum_probs=231.9
Q ss_pred CCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
+...+...++...+.|+.+.++||++.||+++.- .||+||++++..- ......+|...|+++.|..+|+.+++|+.||
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 3444455666678999999999999999999755 7999999988543 3345567878899999999999999999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTS 270 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~ 270 (491)
+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+....+...+. ....
T Consensus 106 t~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999999865554443 34489999999999999999999999999999887766554 3456
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEeccccc--CCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.|.++... ++|.+++.+...|.+++|++-... ..-.++..++.|...+..+.+||++++|++++.|.+++||+..++
T Consensus 169 ~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 89999996 899999999999999999986322 133567788999999999999999999999999999999999874
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
- ..-..+++|. +..|..+||.||.||++|+.|+.+++||+.
T Consensus 248 ~---------------------------------kle~~l~gh~------rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 248 F---------------------------------KLELVLTGHQ------RWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred e---------------------------------eeEEEeecCC------ceEEeeeeccCccEEEecCCCCceeecccc
Confidence 1 2334455665 444555777799999999999999999999
Q ss_pred CCcEEEeeccCCCCeeeeEec
Q 011179 429 SGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s 449 (491)
.++.+....+|..+..+++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999998888887764
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-36 Score=247.80 Aligned_cols=256 Identities=21% Similarity=0.286 Sum_probs=213.8
Q ss_pred EEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC
Q 011179 161 KDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 239 (491)
......+|.+.|+.++..+.+ ..+++++.|..+.+|++....... - .......||...|..+..++||
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-G----------~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-G----------VPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-C----------ceeeeeeccceEecceEEccCC
Confidence 334567889999999999874 678899999999999987653211 0 1111234688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc--cC
Q 011179 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LE 317 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~ 317 (491)
++.++++.|+.+++||+.+++..+.|.+|...|.+++|+ ++++.+++|+.|.+|++|+. .+.+..++..+ .+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcC
Confidence 999999999999999999999999999999999999998 88899999999999999998 45566565544 78
Q ss_pred cEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 318 GITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 ~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.|.++.|+|+ ..+|++++.|++|++||+++. +....+.+|....
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----------------------------------~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----------------------------------QLRTTFIGHSGYV 195 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------------------------chhhccccccccE
Confidence 8999999998 689999999999999999983 4445566666433
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+. .++||||.+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+.. ..|+|||+......
T Consensus 196 ~t------~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 196 NT------VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVV 267 (315)
T ss_pred EE------EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhh
Confidence 32 2678899999999999999999999999988886 7889999999999887777654 45999999887544
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.3e-36 Score=245.15 Aligned_cols=251 Identities=22% Similarity=0.334 Sum_probs=219.9
Q ss_pred eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
...++|...|.++.|++|.++|++++.||.+.|||.-+......+.++. ..|..++|+|.|+++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s----------------~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS----------------SWVMTCAYSPSGNFV 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc----------------eeEEEEEECCCCCeE
Confidence 3557888899999999999999999999999999988776555444332 279999999999999
Q ss_pred EEEeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc
Q 011179 243 VAGSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
|+|+-|+...||++.+. ...+.+.+|.+.+.|+.|. + ...|++++.|.++.+||++ +++.+..+.+|.
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-d-D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-D-DNHILTGSGDMTCALWDIE----TGQQTQVFHGHT 186 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-C-CCceEecCCCceEEEEEcc----cceEEEEecCCc
Confidence 99999999999999865 3456788999999999995 4 6678899999999999999 899999999999
Q ss_pred CcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 317 EGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 317 ~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
+.|.+++++| +++.+++|+.|+..++||+|. +..+++|.+|....
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~----------------------------------~~c~qtF~ghesDI 232 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS----------------------------------GQCVQTFEGHESDI 232 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccC----------------------------------cceeEeeccccccc
Confidence 9999999999 999999999999999999998 57889999998544
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc--CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
..+ .|-|+|.-+++|+.|++.++||++..+.+..+.. -..+|++++||..|++|++|..|..+.+||.-.++
T Consensus 233 Nsv------~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 233 NSV------RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ceE------EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 333 5667999999999999999999999998888862 24689999999999999999999999999987665
Q ss_pred CC
Q 011179 474 EA 475 (491)
Q Consensus 474 ~~ 475 (491)
..
T Consensus 307 ~v 308 (343)
T KOG0286|consen 307 RV 308 (343)
T ss_pred eE
Confidence 44
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-37 Score=280.73 Aligned_cols=333 Identities=18% Similarity=0.199 Sum_probs=266.2
Q ss_pred cccccccccCCCCCCccccCCCCceEEEEEcCCCC--EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC
Q 011179 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 180 (491)
+....++++--....+.+.+|.+.|..+.|+|+-+ +|++|..|+++++||+.+... .......|...|++++|++|
T Consensus 126 D~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 126 DGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred cceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccC
Confidence 44455666666667788999999999999999875 488999999999999996533 23455678889999999999
Q ss_pred CCeEEEEECCCeEEEEECCCCcccccccccccccccc-------------c------------------------c----
Q 011179 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD-------------F------------------------S---- 219 (491)
Q Consensus 181 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-------------~------------------------~---- 219 (491)
+..+++++.|..+.|||+.+-+........+..++.. + +
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 9999999999999999986443322211110000000 0 0
Q ss_pred c--------------------------------------------------------------------------cCCCC
Q 011179 220 A--------------------------------------------------------------------------ADDGG 225 (491)
Q Consensus 220 ~--------------------------------------------------------------------------~~~~~ 225 (491)
. .-..|
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 0 00017
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccc
Q 011179 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 226 h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 301 (491)
|+..|.++....+|-+|++|+.|.++++|.++.+. ++....+|...|.+++++.....+|+++|.|+++++|++..
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 88888888866678899999999999999885443 34455689999999999867778999999999999999974
Q ss_pred ccCCCce-ee----EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 302 LNVKGKP-AG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 302 ~~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
...+..+ +. ....|...|++++++|+.++++|||.|.+.+||++..
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----------------------------- 494 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----------------------------- 494 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-----------------------------
Confidence 2211111 11 3457999999999999999999999999999999985
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEE
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 456 (491)
.....++.||. +..|+..|+|..+.++++|.|++|+||.+.+..+++++.+|...|..+.|-.+++.|+
T Consensus 495 -----~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 495 -----LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred -----ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE
Confidence 47788899998 4456667888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEcCCCCCCCCC
Q 011179 457 SSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 457 s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
|++.||.|++|++.+++....
T Consensus 564 S~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred eccCCCcEEEEeccchhhhhh
Confidence 999999999999999876543
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=280.38 Aligned_cols=314 Identities=21% Similarity=0.297 Sum_probs=259.2
Q ss_pred ccccccCCCCCCccccCCCCceEEEEE-cCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (491)
.++.+.-.......+-|..+.|..|+| .|+.++||+++..+.+++|++.+.... ...+|...|.++....+|.+|
T Consensus 305 l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEE
Confidence 333333344444566788899999987 567789999999999999998876333 557888899999966678899
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee--
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-- 261 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-- 261 (491)
++++.|+++++|.++++...... .....+|...|.+++++..+ .+|++++.|.++++|++...+.
T Consensus 381 at~sKD~svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred EEecCCceEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 99999999999998544332211 11234788899999997644 5899999999999999976221
Q ss_pred ---eE----EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe
Q 011179 262 ---SL----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 262 ---~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
.. ....|...|+|++++ |+..+|++||.|.+.+||+++ .......+.+|...|.++.|+|..+.++++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred ccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEec
Confidence 11 223799999999998 888999999999999999998 888999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE
Q 011179 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
|.|++|+||.+.+ ..++.+|.||. ..+.++.|- .+|+.|+
T Consensus 524 SgD~TvKIW~is~----------------------------------fSClkT~eGH~--~aVlra~F~----~~~~qli 563 (775)
T KOG0319|consen 524 SGDKTVKIWSIST----------------------------------FSCLKTFEGHT--SAVLRASFI----RNGKQLI 563 (775)
T ss_pred cCCceEEEEEecc----------------------------------ceeeeeecCcc--ceeEeeeee----eCCcEEE
Confidence 9999999999998 46889999998 444454443 4899999
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 480 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~ 480 (491)
+++.||-|++|++++++++.++..|...|++++-+|...+++||+.||.|.+|.=.+..+......
T Consensus 564 S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~ 629 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQE 629 (775)
T ss_pred eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997665554443333
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=261.55 Aligned_cols=275 Identities=26% Similarity=0.390 Sum_probs=234.0
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
....|+|+++. ...+++|..|++|+|||..+-..+. ...+|.+.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 45789999996 3469999999999999998754443 45689999999998 46799999999999999999999
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEEeccCCCeeEEEEec
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~ 279 (491)
+....- +|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|...|+.+.|.
T Consensus 269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 865543 577799999997 44899999999999999987652 23466999999999995
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.+++++++.|.+|++|+.. +...+..+.+|..+|-|+.+ .++++++|+.|.+|++||+..
T Consensus 330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------------ 389 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------------ 389 (499)
T ss_pred --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc------------
Confidence 4599999999999999998 88999999999999999988 488999999999999999987
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE-------
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ------- 432 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------- 432 (491)
+..++.++||......+++ |.+.+++|..||+|+|||+..+..
T Consensus 390 ----------------------G~cLRvLeGHEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra~~~~ 439 (499)
T KOG0281|consen 390 ----------------------GACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRAPAST 439 (499)
T ss_pred ----------------------cHHHHHHhchHHhhhheee--------cCceeeeccccceEEEEecccccCCcccccc
Confidence 5778888999876655543 688999999999999999987642
Q ss_pred --EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 433 --VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 433 --~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+..+..|.+.|..+.| |...+++++.|.+|.|||+.++...
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 3445579999999999 7779999999999999999887644
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-34 Score=254.65 Aligned_cols=314 Identities=18% Similarity=0.262 Sum_probs=256.8
Q ss_pred cccccccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEEC
Q 011179 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (491)
+...+++.+....-.......+.+|..+++...|||.|.|+|+|...|+|||||....+.+.+. ......++|.+++|+
T Consensus 34 lY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di~Wd 112 (603)
T KOG0318|consen 34 LYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDISWD 112 (603)
T ss_pred EEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeecccccccceeC
Confidence 3445555555555555556788899999999999999999999999999999998775444432 223445689999999
Q ss_pred CCCCeEEEEECC----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEE
Q 011179 179 PDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYV 253 (491)
Q Consensus 179 p~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~v 253 (491)
+|+++|++.+.. |.+.+||.. .... ...||...|.++.|-|... ++++|+.|++|.+
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DSG--~SvG----------------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~f 174 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDSG--NSVG----------------EITGHSRRINSVDFKPSRPFRIATGSDDNTVAF 174 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecCC--Cccc----------------eeeccceeEeeeeccCCCceEEEeccCCCeEEE
Confidence 999999887653 356666643 3211 1237888999999998665 6999999999999
Q ss_pred EECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec---cccCcEEEEEEcCCCCE
Q 011179 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRY 330 (491)
Q Consensus 254 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 330 (491)
|+-...+....+..|...|.|+.|+ |++.++++.+.||++.+||-. .+..+..+. +|.+.|.+++|+||+..
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCce
Confidence 9988888888888999999999998 789999999999999999987 777888877 89999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc-eeEeeEEEEecccccCC
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~ 409 (491)
+++++.|.+++|||+.+. ..+.++.-.. .......+.|.
T Consensus 250 ~~T~SaDkt~KIWdVs~~----------------------------------slv~t~~~~~~v~dqqvG~lWq------ 289 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTN----------------------------------SLVSTWPMGSTVEDQQVGCLWQ------ 289 (603)
T ss_pred EEEecCCceEEEEEeecc----------------------------------ceEEEeecCCchhceEEEEEEe------
Confidence 999999999999999984 3444443222 12233444443
Q ss_pred CcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
...|++.+.+|.|.+++...+..+..+.+|...|++++.+||+++|++|+.||.|.-|+...+..-+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 5679999999999999999999999999999999999999999999999999999999998876543
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-35 Score=268.12 Aligned_cols=303 Identities=18% Similarity=0.333 Sum_probs=256.3
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC-----------------------C-e-------EEEE
Q 011179 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----------------------G-W-------KIQK 161 (491)
Q Consensus 113 ~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~-----------------------~-~-------~~~~ 161 (491)
....+..+.+|++.|-++-|..+..-+.+.+.||.+.+|.... + + ...+
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 3344678899999999999999999999999999999998761 1 1 0111
Q ss_pred EeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCE
Q 011179 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 241 (491)
..........|++.+|++..+.|+++-..|...++.+..-.++....+.. .+|..++|+..|..
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~----------------~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD----------------QKILTVSFNSTGDW 321 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----------------ceeeEEEecccCCE
Confidence 11112222579999999999999999999999999998877765554432 17999999999999
Q ss_pred EEEEeCC-CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 242 LVAGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 242 l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
||.|+.. |.+.||++.+...+....+|...+++++++ |+|+++++|+.||.|+|||.. .+-+..++..|++.|+
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVT 396 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceE
Confidence 9998865 899999999999998999999999999998 899999999999999999998 8889999999999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
.+.|+..|+.+++.+-||+|+.||+.. ....++|........
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkR----------------------------------YrNfRTft~P~p~Qf---- 438 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKR----------------------------------YRNFRTFTSPEPIQF---- 438 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecc----------------------------------cceeeeecCCCceee----
Confidence 999999999999999999999999987 345555555442111
Q ss_pred EecccccCCCcEEEEEecCC-eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 401 HFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+.+..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|++||.+++|+|++..|+|+++|.+|++|++-.....
T Consensus 439 -scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 439 -SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred -eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 1235566799999999986 7999999999999999999999999999999999999999999999999766433
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=266.71 Aligned_cols=290 Identities=20% Similarity=0.313 Sum_probs=248.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-CeEEEEECCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVGS 200 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~iw~~~~ 200 (491)
.....|+|.+|++..+.||+|...|...+|.+..-..++.+.... .+|..++|+..|.+||.|+.. |.+-||++.+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 344899999999999999999999999999999876776655443 379999999999999998765 7999999987
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
...+... .+|...+.+++++|||+++|+|+.||.|+|||...+-+..++..|+..|+.+.|+ .
T Consensus 340 EsYVlKQ----------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~ 402 (893)
T KOG0291|consen 340 ESYVLKQ----------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-A 402 (893)
T ss_pred cceeeec----------------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-e
Confidence 7653322 3688899999999999999999999999999999999999999999999999998 8
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEecccc-CcEEEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCCcccccCCC
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~ 358 (491)
.++.+++.+-||+|+.||+. .....++++... -...+++..|.|.++++|+.|. .|.+|++.+
T Consensus 403 ~g~~llssSLDGtVRAwDlk----RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT----------- 467 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLK----RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT----------- 467 (893)
T ss_pred cCCEEEEeecCCeEEeeeec----ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-----------
Confidence 89999999999999999997 667777776542 3467888999999999998886 499999998
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEeec
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK 437 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 437 (491)
++.+..+.||.... .++.|+|++..|++++.|.+|++||+-.. ..+.+++
T Consensus 468 -----------------------GqllDiLsGHEgPV------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 468 -----------------------GQLLDILSGHEGPV------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred -----------------------CeeeehhcCCCCcc------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 67888899998433 33367779999999999999999998654 3444554
Q ss_pred cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
+...+.+++|+|||+.|++++.||.|.+||.....+..
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 67789999999999999999999999999998876653
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-35 Score=276.43 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=191.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+|.++|+.+.|+|+.++|++++.|+++|+|.+.+.. ......+|..+|.++.|+|.|-|+|+++.|++.++|.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 3478999999999999999999999999999999999863 3345568999999999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
.+.....+++. ||-..|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.+|.++|.+++|
T Consensus 522 ~d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 522 TDHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred cccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 98766554433 67779999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+ |+|++|++|+.||.|.+||+. .+..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus 586 S-p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 586 S-PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred c-CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 8 799999999999999999998 8899999999999999999999999999999999999999976
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=251.30 Aligned_cols=288 Identities=22% Similarity=0.291 Sum_probs=245.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEE-----eecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
+..+.+-|..|||||++|++|+.||.|.|||..+|+....+ ....-+..+|.|+.|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 55778899999999999999999999999999988432211 1112345689999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
.+.+|.+...+. ..|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...
T Consensus 291 ri~tG~ClRrFd---------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFD---------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhh---------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 999999866543 24777999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc--ccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
|. ++|+.+++++.||+|++|+.. ...++.++.. ..-+|.++-.-| +...++++...+++.|.++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 97 899999999999999999997 6667666654 344677777655 556899999999999999875
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC-ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
+.++.+... ......+.+ +.||.|.++++.+.|+.++.|...+|++
T Consensus 425 -----------------------------QvVrsfsSGkREgGdFi~~----~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 -----------------------------QVVRSFSSGKREGGDFINA----ILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----------------------------eEEeeeccCCccCCceEEE----EecCCCcEEEEEccCcEEEEEEeecCce
Confidence 677777533 222333333 4566899999999999999999999999
Q ss_pred EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
..++..|...|..++-+|..++||+=+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999996
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-35 Score=264.98 Aligned_cols=292 Identities=20% Similarity=0.251 Sum_probs=251.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+..+..+|.++.|+|...+++++-.+|.|.|||.++...+....... -+|.+..|-+..+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEe
Confidence 4556689999999999999999999999999999999976665554433 3899999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~ 276 (491)
..+++....+. .|..-|.+++.+|...++++++.|-.|++||.+.. .+.+.+.+|...|.+++
T Consensus 84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 99987655433 47779999999999999999999999999999765 56788999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
|+|.+.+.+++++-|++|++|.+. ...+..++.+|...|+++++-+.| .+|++|+.|.+|+|||..+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------- 216 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------- 216 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-------
Confidence 999999999999999999999998 788889999999999999997644 6999999999999999988
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
..++.++.||.... ...+| .|.-.++++|++||+++||+..+-++..
T Consensus 217 ---------------------------k~CV~TLeGHt~Nv--s~v~f----hp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 217 ---------------------------KSCVQTLEGHTNNV--SFVFF----HPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ---------------------------HHHHHHhhcccccc--eEEEe----cCCCcEEEEecCCccEEEecCcceehhh
Confidence 46788899988433 33334 4466799999999999999999998888
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++.-.-+.|++++-.+.+..++.|.+.|.|. .++-.++
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgree 301 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREE 301 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCC
Confidence 8887788999999999888899888877664 3444333
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=238.97 Aligned_cols=291 Identities=22% Similarity=0.335 Sum_probs=246.5
Q ss_pred CCccccCCCCceEEEEEcC---CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~---dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
.|....+|.-+|-.++||| +|-+|++++.||.-.+-+-++|.-+.. ..+|.+.|.......+...-++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccch
Confidence 4677799999999999986 889999999999999999888866654 4688889999999988888899999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD 271 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~ 271 (491)
-++||.-+|..+..+. |+.-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus 83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 9999999887655443 55579999999999999999999999999998765 45678899999
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
|..+.|+ ...+.|++++.|++||+||.+ ++..++.+. ...+|+++.++++|++|.++ ..+.|.+||..+...
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~- 217 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL- 217 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-
Confidence 9999999 667788888999999999999 788887776 46789999999999876655 556799999987432
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
++.++-.. . ..+..++|+...+++|++|..++.||..+|+
T Consensus 218 ---------------------------------lKs~k~P~---n----V~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 218 ---------------------------------LKSYKMPC---N----VESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ---------------------------------eeeccCcc---c----cccccccCCCceEEecCcceEEEEEeccCCc
Confidence 33322221 1 1233567788999999999999999999999
Q ss_pred EEEee-ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 432 QVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 432 ~~~~~-~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+..+ ++|.++|.++.|+|||...++|+.||+|++|.+..+..
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99886 89999999999999999999999999999999876653
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-35 Score=248.53 Aligned_cols=258 Identities=23% Similarity=0.360 Sum_probs=220.4
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
..+|+.+|+.+-|+|+-..+++++.|++|++||..+++..... .||...+.+++|+..|++|++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L----------------rGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL----------------RGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh----------------hccccceeEEEEecCccEEEe
Confidence 3568889999999999999999999999999999999874433 378889999999999999999
Q ss_pred EeCCCeEEEEECCC-CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 245 GSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 245 ~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
++.|-.+.+||..+ .++++.+.+|.-.|.+++|- |.+.+|++++.|.+|+.|++. ++-++..+.+|.+.|..++
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEEE
Confidence 99999999999987 56777788999999999998 678999999999999999998 8999999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEe-
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF- 402 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 402 (491)
.+.||.++++++.|.+|++|-+.+++.. ..++.|......+....
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAPE 288 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEeccc
Confidence 9999999999999999999999885332 22333332222211110
Q ss_pred --ccccc------CCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 403 --SPVYS------TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 403 --~~~~s------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+..+ ..+.++.+++.|++|++||+.++.++.++.+|...|.+++|+|.|+||+++.+|+++++||+.+...
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 11110 1357999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 011179 475 AAP 477 (491)
Q Consensus 475 ~~~ 477 (491)
...
T Consensus 369 mk~ 371 (406)
T KOG0295|consen 369 MKT 371 (406)
T ss_pred eec
Confidence 544
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-34 Score=232.33 Aligned_cols=290 Identities=20% Similarity=0.299 Sum_probs=238.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
|..+++|+-+++-+.|+.+|.+|.+++.|.++.||-..+|+.+. ...+|.+.|.++..+.+.+++++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 46789999999999999999999999999999999988886655 557999999999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLE-------ANKLSLR 264 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~ 264 (491)
|+++|+.+....... +|..+.|+++|++++.... .+.|.++|++ ..++...
T Consensus 80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999877766543 7999999999998777654 4679999998 4556788
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
+..+...++.+-|. +-++.|++|..||.|.+||++ ++ ..+.....|...|+.++++|+..++++++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 88889999999997 789999999999999999998 54 4556667899999999999999999999999999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC--e
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--C 421 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~ 421 (491)
|.++. ..++++..... +. +.+++|-...++.|+... .
T Consensus 218 D~~tl----------------------------------~v~Kty~te~P---vN----~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 218 DVRTL----------------------------------EVLKTYTTERP---VN----TAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred eccce----------------------------------eeEEEeeeccc---cc----ceecccccceEEecCCceeee
Confidence 99884 34444443332 22 224555555555554321 1
Q ss_pred ------------EEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 422 ------------VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 422 ------------i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
-++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.|++.-+...
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 233333334567778899999999999999999999999999999877653
No 39
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.6e-35 Score=242.04 Aligned_cols=299 Identities=22% Similarity=0.341 Sum_probs=240.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC------------C---eEEEEEeecCCCceeEEEEEECCCC
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------G---WKIQKDILAKSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~------------~---~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (491)
...+..|++++.+.+|||||.++|+|+.|-.|+|.|++. + ..-..+.....|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 346788999999999999999999999999999999872 1 1112233445777899999999999
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
..|++++.|++|+++|+.....++-.+.... ..+|.++.|+|.|.+|++|.....+++||+++-++
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQD--------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhc--------------cceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 9999999999999999987655544443221 12899999999999999999999999999999887
Q ss_pred eEEEe---ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-ccc-CcEEEEEEcCCCCEEEEeeC
Q 011179 262 SLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHL-EGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 262 ~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~s~~~ 336 (491)
...-. +|.+.|+++.++ +.+++.++++.||.|++||-- ..+++..+. .|. ..|.+..|..+|+++++.+.
T Consensus 251 fvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred eeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 65443 689999999998 889999999999999999975 667777664 343 45889999999999999999
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
|..+++|.+.+ +..+..+.|....... .......|.....|++.-
T Consensus 326 DS~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 326 DSTVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred cceeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEcc
Confidence 99999999998 4666666654321111 111222455566677665
Q ss_pred ec-CCeEEEEECCCCcEEEeec-cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 417 SH-DSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 417 ~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+ .+.+.-||.+++..+..+. +|.++++.+.-||.+..++||+.|-.+++|--
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 54 4689999999987766554 89999999999999999999999999999964
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.5e-34 Score=231.07 Aligned_cols=288 Identities=18% Similarity=0.336 Sum_probs=239.5
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw 196 (491)
..+++|..+|.+++|+.+|..|++|+.|+++.+|+++.. ...+.....+|...|-.++|+|. ...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 566889999999999999999999999999999999987 33444556788888999999985 4789999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
|+..+++........ .=.-+.|+|+|.++++++.|..|...|.++.+..... .....+..++
T Consensus 93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999988765544322 3345799999999999999999999999988776554 4566788999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
|+ .++++++....-|.|.|-... .-+++..+.+|.....||.|+|+|++||+|+.|..+.+||+...-
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi------- 222 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI------- 222 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------
Confidence 98 777788777778999999887 778999999999999999999999999999999999999998742
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
+++.+..+.-... .+.||.||++||+|++|..|-|=++.+|..+..+
T Consensus 223 ---------------------------C~R~isRldwpVR------TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 223 ---------------------------CERCISRLDWPVR------TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred ---------------------------hheeeccccCceE------EEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 2333333321111 1257779999999999999999999999999999
Q ss_pred ccCCCCeeeeEecCCCCeEEEEeCC---------CcEEEEcCC
Q 011179 437 KYHTSPVRDCSWHPSQPMLVSSSWD---------GDVVRWEFP 470 (491)
Q Consensus 437 ~~h~~~v~~~~~sp~~~~l~s~~~D---------g~v~iw~~~ 470 (491)
+ +.++...++|+|...+||-+++| |.|+++-++
T Consensus 270 ~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 270 P-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred e-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 7 88999999999999999988765 567776554
No 41
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=256.09 Aligned_cols=317 Identities=20% Similarity=0.330 Sum_probs=247.4
Q ss_pred cccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEECCCCCeE
Q 011179 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (491)
...+|......+.+|...|.++++.|.|.+|++|+.|.+|++||+..- .....+.....| .|+++.|++.+..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence 455777778889999999999999999999999999999999998753 222333333344 79999999999999
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeE
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSL 263 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 263 (491)
++.+.....+|+|.+..+.....+-.. .........||...++|.+|+|+. ..+++++.||++++||+...+...
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQ----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQ----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccch----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 999989999999987665543332211 112233456899999999999965 478999999999999998765333
Q ss_pred EEe------ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC--cEEEEEEcCCCCEEEEee
Q 011179 264 RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG 335 (491)
Q Consensus 264 ~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~ 335 (491)
... +..-+++.++|+ +++.+||+|..||.|.+|+.+... .......-.+|.. .|+||.||++|++|++-+
T Consensus 306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 222 234578999998 889999999999999999976332 2222334456777 899999999999999999
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.|+++++||++.+. +++..+.+-........| +|||+.++|++
T Consensus 384 ~D~tLKvWDLrq~k---------------------------------kpL~~~tgL~t~~~~tdc----~FSPd~kli~T 426 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK---------------------------------KPLNVRTGLPTPFPGTDC----CFSPDDKLILT 426 (641)
T ss_pred CCCceeeeeccccc---------------------------------cchhhhcCCCccCCCCcc----ccCCCceEEEe
Confidence 99999999999865 344444443333333333 56779999999
Q ss_pred Eec------CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 416 GSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 416 ~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
|.. .|.+++||..+.+.+..+......|..+.|+|.-+.|+.|+.||.+++|==+
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 864 5789999999999999998778899999999999999999999999987433
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=255.47 Aligned_cols=301 Identities=22% Similarity=0.314 Sum_probs=250.8
Q ss_pred ccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCe
Q 011179 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (491)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 183 (491)
...++...+|......++.|.+.+..+.|-++...|++|+.|..|++|++..++ ........+..+.|+.+.|.+++++
T Consensus 155 ~d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~ 233 (459)
T KOG0288|consen 155 DDHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKH 233 (459)
T ss_pred CchhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCce
Confidence 367788999999999999999999999999998999999999999999998664 3333444566668999999999999
Q ss_pred EEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011179 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (491)
Q Consensus 184 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 263 (491)
+++++.|+.+++|++...+..... .||+..|+++.|......+++|+.|.+|++||+....+..
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TL----------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTL----------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhh----------------cccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 999999999999999987764433 3688999999999877779999999999999999988877
Q ss_pred EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 264 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
++.. ...+..|+.+ ...+++|-.|++|++||.+ ...+......+ +.|+++..++++..|.+++.|.++.+.
T Consensus 298 t~l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 298 TVLP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred cccc-cccccceEec---ceeeeecccccceEEEecc----CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeee
Confidence 6643 4556667664 5678899999999999998 66777776665 499999999999999999999999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce--eEeeEEEEecccccCCCcEEEEEecCCe
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 421 (491)
|+++.. ...++..... .... ....|||++.|+++|+.||.
T Consensus 369 DlRt~e----------------------------------I~~~~sA~g~k~asDw----trvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 369 DLRTKE----------------------------------IRQTFSAEGFKCASDW----TRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred eccccc----------------------------------EEEEeecccccccccc----ceeEECCCCceeeeccCCCc
Confidence 999843 3333332221 1111 22357789999999999999
Q ss_pred EEEEECCCCcEEEeeccCCC--CeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 422 VYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999988875444 599999999999999999999999994
No 43
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-34 Score=231.15 Aligned_cols=285 Identities=21% Similarity=0.286 Sum_probs=225.1
Q ss_pred eEEEEEcCC-CCEEEEEE-------cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEEE
Q 011179 127 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVD 197 (491)
Q Consensus 127 i~~~~~s~d-g~~la~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~ 197 (491)
=+++.|||- .++||++. ..|++.|-++..+..+....... -...+..++|+++. ..+++++.||.+++||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEec
Confidence 478899993 23444432 37899999997554455443332 33479999999965 6778889999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
...... .+.. ...|..+|.++.|++ +++.+++++.|++|++|+...++.+.++.+|...|....
T Consensus 90 ~~~~s~-Pi~~--------------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 90 LTMPSK-PIHK--------------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCCCCc-chhH--------------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 543221 1111 124777999999998 556788889999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+|..++++++++.|+++++||++. .++... +..|...|.++.|+. +.+.++||+.|+.|+.||+++..
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------ 224 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------ 224 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc------
Confidence 9999999999999999999999983 344444 888999999999987 56788999999999999999854
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 434 (491)
.++..+.+|..... +..++|. ...+||+++.|-+++|||...+ ..+.
T Consensus 225 ---------------------------~pl~eL~gh~~AVR--kvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 225 ---------------------------TPLFELNGHGLAVR--KVKFSPH---HASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred ---------------------------ccceeecCCceEEE--EEecCcc---hhhHhhhccccceEEecccccchhhhh
Confidence 55677788874433 3444543 4578999999999999998854 4566
Q ss_pred eeccCCCCeeeeEecCC-CCeEEEEeCCCcEEEEcC
Q 011179 435 ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~-~~~l~s~~~Dg~v~iw~~ 469 (491)
+...|..-+..+.||+- ..++|++++|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 77789999999999985 449999999999999984
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.7e-36 Score=251.25 Aligned_cols=239 Identities=23% Similarity=0.371 Sum_probs=207.2
Q ss_pred CceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
....|+|+.+ |...+++|..|++|+|||..+-.+.... .||++.|.|+.|. .+.|++|+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L----------------~GHtGSVLCLqyd--~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKIL----------------TGHTGSVLCLQYD--ERVIVSGSS 255 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhh----------------hcCCCcEEeeecc--ceEEEecCC
Confidence 3347999998 4667999999999999999876664433 3799999999995 569999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
|.+|+|||+++++++.++..|...|..+.|+ +.++++++.|.++.+||+.... .......+.+|...|+.+.|+
T Consensus 256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd-- 329 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD-- 329 (499)
T ss_pred CceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--
Confidence 9999999999999999999999999999997 5699999999999999997443 344556788999999999996
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.+++++++.|.+|++|++.+ ...++++.+|....... .|
T Consensus 330 ~kyIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIACl------QY- 368 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIACL------QY- 368 (499)
T ss_pred cceEEEecCCceEEEEeccc----------------------------------eeeehhhhcccccceeh------hc-
Confidence 55999999999999999988 57788888887433322 22
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
.++++++|+.|.+|++||+..|.++..+++|+.-|.++.| |.+.+++|+.||+|++||+..+.++.
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred -cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 6899999999999999999999999999999999999999 77799999999999999999887763
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=256.04 Aligned_cols=244 Identities=24% Similarity=0.402 Sum_probs=208.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.|..+.|.|+|+.|++|+..|.+.+|+..+-....+. ..|..+|.++.|++++.++++|+.+|.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil----------------QaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL----------------QAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh----------------hhhcccceeEEEccCCCEEEEcCCCce
Confidence 7999999999999999999999999997433222111 247779999999999999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
|++|+..-.........|...|++++|+ ++...|++++.||+|+|||.. ..+....+.+|.-.|.+++|+|...+
T Consensus 162 iKyWqpnmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~----~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 162 IKYWQPNMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFR----MPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred EEecccchhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEecc----CCchhheeccCCCCcceeccCCccce
Confidence 9999987665433333455999999998 577889999999999999998 66777788999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
|++++.|..|++||.++ +.++.++.+|. .+++.. .|++++
T Consensus 237 iasgskDnlVKlWDprS----------------------------------g~cl~tlh~HK--ntVl~~----~f~~n~ 276 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRS----------------------------------GSCLATLHGHK--NTVLAV----KFNPNG 276 (464)
T ss_pred eEEccCCceeEeecCCC----------------------------------cchhhhhhhcc--ceEEEE----EEcCCC
Confidence 99999999999999998 46677777777 334444 456689
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCC
Q 011179 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
++|++++.|..+++||+++.+.+..+++|...|+++.|+|-.. +|++|+.||.|..|.+...++.
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 9999999999999999999999999999999999999999655 8999999999999999854433
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=230.60 Aligned_cols=252 Identities=23% Similarity=0.340 Sum_probs=218.5
Q ss_pred eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
.....++++|.++.|+-||+|.++++.|.+|++|+...+.++.... +|..+|..++.+.|+..+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------ghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------GHGHEVLDAALSSDNSKF 74 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------CCCceeeecccccccccc
Confidence 3456778899999999999999999999999999999888766543 677799999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
++|+.|..|.+||+++++..+++.+|.+.|+.+.|+ .+...+++|+.|.++++||.++. ..++++.+....+.|.++
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEE
Confidence 999999999999999999999999999999999998 88899999999999999999854 567888888888999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEe
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
... +..|++|+.||+++.||++.+ +....+-+++ ..
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G----------------------------------~l~sDy~g~p--------it 187 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKG----------------------------------TLSSDYFGHP--------IT 187 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecc----------------------------------eeehhhcCCc--------ce
Confidence 986 458999999999999999984 3333333443 12
Q ss_pred cccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCC--eeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
+..||+|++..++++.|+++++.|-.+|+++..+++|... -.+++++.....+++|+.||.|++||+.......+
T Consensus 188 ~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 188 SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 3367789999999999999999999999999999999764 34567777888999999999999999988765433
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=268.86 Aligned_cols=312 Identities=15% Similarity=0.165 Sum_probs=215.5
Q ss_pred cccc-CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEE--CCCCCeEEEEECCCeEE
Q 011179 118 WPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~-~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~i~ 194 (491)
+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+...+... .... .-.++.+ ...+..-.+.+..+.+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~---~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEG---DSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---cccc---ccchhhhhhhhccccCcccccccccc
Confidence 4455 999999999999999999999999999999987643211 0011 1111111 11111111111110000
Q ss_pred EEE--CCCCccccccccc-cccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 011179 195 IVD--VGSGTMESLANVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 195 iw~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
=-. .+++.......++ ....-.+-+.....||.+.|.++.|+.++ +|++++.|.+|++|++...+++..| .|.+.
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCe
Confidence 000 0000000000000 00000111223446899999999999766 7999999999999999999998888 89999
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
|+|++|+|.|.++|++|+-||.||||++. ...+..+..-.+-|++++|.|||+..+.|+.+|.+++|+....+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~-----d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSIS-----DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecC-----cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 99999999999999999999999999994 5566666666799999999999999999999999999999874432
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc-eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
... .+..-.+.. ....+..+.+.|. +..-|++.+.|..|+|||.++.
T Consensus 487 ~~~-----------------------------~I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 487 SDF-----------------------------HIRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred Eee-----------------------------eEeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccch
Confidence 221 111111111 1124455555543 3346888899999999999999
Q ss_pred cEEEeeccCCC--CeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 431 EQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 431 ~~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+++..|+++.. .-...+|+.||++|+++++|..|++|++.....
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence 99999986543 345678999999999999999999999866543
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=243.52 Aligned_cols=248 Identities=20% Similarity=0.314 Sum_probs=220.5
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|.+.|.++++.|.+.++++|+.|++++|||+.+|++.... .||...|..+++|+-..|++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl----------------tGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL----------------TGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee----------------cchhheeeeeeecccCceEE
Confidence 44688889999999999999999999999999999999875443 25777899999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+++.|+.|+.||++.++.++.+.+|-..|.|++.. |.-..|++|+.|.++++||+| ....+..+.+|..+|.++.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEE
Confidence 99999999999999999999999999999999997 777899999999999999999 8889999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+.|....+++|+.|++|++||++. +....++..|..... +
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hkksvr------a 324 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHKKSVR------A 324 (460)
T ss_pred eecCCCceEEecCCceEEEeeecc----------------------------------CceeEeeecccceee------E
Confidence 999888999999999999999998 455566666653222 2
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
++..|....+|+++.|. |+-|++..|..+..+.+|...|++++.+.|+ ++++|+++|.+.+||..++..
T Consensus 325 l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 25566788899998876 9999999999999999999999999998877 788999999999999988753
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=262.51 Aligned_cols=295 Identities=18% Similarity=0.262 Sum_probs=248.9
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
+....++|..++|+|...+++++-..|.|++||.+-+..+.+ ...|.++|..++|+|++.++++|+.|-.|+||+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 445578899999999999999999999999999998755554 46788899999999999999999999999999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+.++.... .||-.-|..+.|++.-.++++++.|.+|+||+..+++++..+.+|.-.|.|..|+
T Consensus 82 ~rrclftL----------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh- 144 (1202)
T KOG0292|consen 82 TRRCLFTL----------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH- 144 (1202)
T ss_pred cceehhhh----------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence 87764332 3788899999999999999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCeEEEEecccccC-------------------------CCceeeEeccccCcEEEEEEcCCCCEEEEe
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNV-------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
|...+++++|-|.+||+||+..... .......+.+|..+|+.++|+|.-.+|++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 7788999999999999999852110 011234678999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE
Q 011179 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.|..|++|.+...+ .-.+.+..+|... +..+ .|.|...+|+
T Consensus 225 ~DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~nn--Vssv----lfhp~q~lIl 266 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK--------------------------------AWEVDTCRGHYNN--VSSV----LFHPHQDLIL 266 (1202)
T ss_pred CCcceeeEEEecccc--------------------------------ceeehhhhcccCC--cceE----EecCccceeE
Confidence 999999999987632 1345556667633 2233 4555889999
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.++|+.|+|||+...+.+.+++...+.-+.++-+|..+++++|- |+-+.++.++...
T Consensus 267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleREr 324 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER 324 (1202)
T ss_pred ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccC
Confidence 999999999999999999999987788999999999999887765 5557788876443
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=262.68 Aligned_cols=255 Identities=28% Similarity=0.430 Sum_probs=214.3
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
..+...|.++.|+|+|+++++++.++.+++|+..+....... ...+|...|.+++|+|++++++++
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~--------------~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR--------------ELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc--------------cccccccceeeeEECCCCcEEEEe
Confidence 334568999999999999999999999999999665520011 113678899999999999999999
Q ss_pred eCCCeEEEEEC-CCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEE
Q 011179 246 SSDDCIYVYDL-EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 246 ~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (491)
+.|++|+|||+ ..+..++.+.+|...|++++|+ +.++++++|+.|++|+|||++ .++++..+.+|.+.|++++|
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~----~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVR----TGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEecc----CCeEEEeeeccCCceEEEEE
Confidence 99999999999 5568889999999999999998 666999999999999999998 78999999999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecc
Q 011179 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
++++++|++++.|+.|++||+.+.... .+..+.++..... ..+.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------~~~~~~~~~~~~~----~~~~ 340 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL--------------------------------CLKLLSGAENSAP----VTSV 340 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee--------------------------------eeecccCCCCCCc----eeEE
Confidence 999999999999999999999984310 2334444443222 2333
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCC---eeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP---VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 405 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.|+|+++++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++|+.|+.|++|++.+....
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 67779999999999999999999999999999988774 445566789999999999999999999975543
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-31 Score=223.55 Aligned_cols=296 Identities=20% Similarity=0.291 Sum_probs=239.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC--CCeEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~i 195 (491)
..+....+.|.++.|+++|.+|++++.|.+++|||..++..+..+. .+...+..++|......++.++. |.+|+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEE
Confidence 3444568899999999999999999999999999999997776553 33336888889887777777776 889999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
.++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++..++...+... .-..+
T Consensus 85 Lsl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~ 146 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIA 146 (311)
T ss_pred EEeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcce
Confidence 9999988876654 79999999999999999999999999999999988877666433 33456
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+| +|.|-++|++.....|++||+|..+........+. +.....+.|.|+|||++|+.+...+.+++.|.-+
T Consensus 147 Af-Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~------- 218 (311)
T KOG1446|consen 147 AF-DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD------- 218 (311)
T ss_pred eE-CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence 77 48899999998888999999997753333333333 4466789999999999999999999999999876
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
+....++.++....... .+..|+||++++++|+.||+|.+|++++|..+.
T Consensus 219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 35556666655433222 233677899999999999999999999999999
Q ss_pred eecc-CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 435 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 435 ~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+++ +.+++.++.|+|...+++|++ ..+.+|=....+.
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL 307 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence 9998 789999999999988888775 5688887665443
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.7e-32 Score=233.76 Aligned_cols=293 Identities=20% Similarity=0.266 Sum_probs=236.7
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC---CeEEEEECCCeE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIV 193 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d~~i 193 (491)
+..--.|.+-|.++... ++.+++|+.||.+++||.... ... ...+|.++|.+++|.-.. ..+++++.|.++
T Consensus 98 pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 44445688999999888 789999999999999998753 333 346788899988885433 469999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--------------- 258 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------- 258 (491)
++|.++.++....... ...||...|.++...++|..+++|+.|..|.||+.+.
T Consensus 172 ~Lw~~~~~~~~~~~~~------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALK------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEEEecCchhhhhHHh------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 9999987764322211 1237999999999999999999999999999999321
Q ss_pred ----------CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC
Q 011179 259 ----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 259 ----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 328 (491)
+.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+..+..+.+ ...++++..+|..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccc
Confidence 13456678999999999996 3 7789999999999999998 6666666553 4678999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC
Q 011179 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
++|++|+.|..|++||.+++.. .-...+|.+|.. .+..+.++|.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~n--wVssvkwsp~--- 356 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKN--WVSSVKWSPT--- 356 (423)
T ss_pred ceeeecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchh--hhhheecCCC---
Confidence 9999999999999999998532 124566778875 3444555554
Q ss_pred CCcEEEEEecCCeEEEEECCCCc-EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++.+|++||.|.+|+|+.-..
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 56778999999999999999987 899999999999999997 456899999999999997543
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=242.54 Aligned_cols=301 Identities=20% Similarity=0.232 Sum_probs=235.2
Q ss_pred CCCCCCccccCCCCceEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~dg~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (491)
|.......+....+.|..++|||...+ +|+.+ .-.+.||+..+......+. ..+..|.++.|-.||++|++|...
T Consensus 14 w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s---rFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 14 WRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS---RFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred hhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH---hhccceeEEEeecCCeEEEccCCc
Confidence 333334445556789999999997654 44443 4479999988754443332 233479999999999999999999
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
|.|+|+|..+....... .+|..++..+.|+| ++..+++|+.|+.+++||+.+......+.+|+
T Consensus 90 G~V~vfD~k~r~iLR~~----------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht 153 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQL----------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT 153 (487)
T ss_pred CcEEEeccccHHHHHHH----------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence 99999996653333322 25777999999999 45678888999999999999998877889999
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
+.|.|.+|+|.+++++++|+.||+|++||.+.. ...+..+ .|..+|..+.+-|.|..|++++.. .+++||+.++.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ 228 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---TSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG 228 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccC---CceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc
Confidence 999999999888999999999999999999832 1344444 589999999999999999988754 69999998643
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
+.+.....|....+. +.+..++..|++|+-|+.|++||+.+
T Consensus 229 ---------------------------------qll~~~~~H~KtVTc------L~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 229 ---------------------------------QLLTSMFNHNKTVTC------LRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ---------------------------------eehhhhhcccceEEE------EEeecCCceEeecccccceEEEEccc
Confidence 333333335532332 24444789999999999999999988
Q ss_pred CcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
.+.+..+. ..++|.+++.+|+++.++.|-.||.+.+=+....+++.+
T Consensus 270 ~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 270 YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSK 316 (487)
T ss_pred eEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCc
Confidence 89988887 678999999999999999999999998887666555544
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=251.20 Aligned_cols=287 Identities=21% Similarity=0.283 Sum_probs=243.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+|++.|.+++||.|...+++|+ .+.|+||+..+.+.+.++... .+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 46689999999999999988788774 568999999998887765322 688999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cee--eEE-----E
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKL--SLR-----I 265 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~--~~~-----~ 265 (491)
+.+........ .|.+.|.+++.+||++.+++|+.|.+|++||..- +.. +.. .
T Consensus 441 laS~~l~Eti~----------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 441 LASASLVETIR----------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eehhhhhhhhh----------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 99877654433 4777999999999999999999999999999742 111 111 1
Q ss_pred eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 266 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
..-...|.|+.++ |++++|+.+--|++|+||-+. +-+....+.||.-||.|+..+||+++++||+.|.+|++|-+
T Consensus 505 Lel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 505 LELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EeccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 1345789999998 899999999999999999997 66777889999999999999999999999999999999998
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 425 (491)
.-+ .+-..+-+|.. .++.. .|-|....+++++.|+.|+-|
T Consensus 580 dFG----------------------------------DCHKS~fAHdD--Svm~V----~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 580 DFG----------------------------------DCHKSFFAHDD--SVMSV----QFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ccc----------------------------------hhhhhhhcccC--ceeEE----EEcccceeEEEecCcceEEee
Confidence 763 44445555652 23333 344578899999999999999
Q ss_pred ECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 426 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 426 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
|-..-+.+..+.+|...|++++.+|+|.+++|++.|..|++|+...
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999999999999999765
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=226.55 Aligned_cols=253 Identities=24% Similarity=0.327 Sum_probs=213.6
Q ss_pred EEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC
Q 011179 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 161 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~ 240 (491)
......+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.... ..... ..+|++.|..+.|.+|++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~--------------lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWV--------------LKGHSGAVMELHGMRDGS 103 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceee--------------eccccceeEeeeeccCCC
Confidence 344567899999999999999999999999999999975332 11111 237999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
.|++++.|.+|+.||+++++.+++++.|..-|+.+.-+..+..++.+++.|+++++||+| ....++.+. ..-.++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R----~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR----KKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec----ccchhhccc-cceeEE
Confidence 999999999999999999999999999999999998765667788999999999999998 666665554 356789
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
++.|..++..+++|+-|+.|++||++. +....++.||....+-
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~----------------------------------~d~~~~lsGh~DtIt~--- 221 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRK----------------------------------NDGLYTLSGHADTITG--- 221 (338)
T ss_pred EEEecccccceeeccccCceeeecccc----------------------------------CcceEEeecccCceee---
Confidence 999999999999999999999999998 5677888898854433
Q ss_pred EecccccCCCcEEEEEecCCeEEEEECCC----CcEEEeeccCC----CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVS----GEQVAALKYHT----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+..+++|.++.+-+.|.++++||++. .+++..+.+|. .....++|+|++..+.+|+.|..+++||....
T Consensus 222 ---lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 222 ---LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ---EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 35677999999999999999999864 34577777653 34567899999999999999999999998774
Q ss_pred C
Q 011179 473 G 473 (491)
Q Consensus 473 ~ 473 (491)
.
T Consensus 299 ~ 299 (338)
T KOG0265|consen 299 R 299 (338)
T ss_pred c
Confidence 3
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=248.76 Aligned_cols=249 Identities=22% Similarity=0.289 Sum_probs=220.5
Q ss_pred CceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
+...|.++.|+|....++++-.+|.|.|||.++......+.+.+. +|.+..|-+..+.+++|+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~----------------PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV----------------PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc----------------chhhheeeeccceEEEecC
Confidence 445799999999999999999999999999999887766655432 7889999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-
Q 011179 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG- 326 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 326 (491)
|..|+||+.++++.+..+..|.+.|.+++.+ |...+++++|+|-+|++||.+ ....+.+.+.+|...|.+++|+|
T Consensus 76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred CceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999997 777899999999999999987 46678899999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|.+.+++++-|++|++|.+.. ..+..++++|......+......
T Consensus 152 D~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~~g-- 195 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYTGG-- 195 (794)
T ss_pred CccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEeccCC--
Confidence 567899999999999999987 35677888888555444333222
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
|..+|++|+.|..|+|||..+..++.++.+|...|..+.|+|.-++++||+.||+|+||+-.+-..
T Consensus 196 --dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 196 --DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred --CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 567999999999999999999999999999999999999999999999999999999999766443
No 57
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.4e-32 Score=261.77 Aligned_cols=319 Identities=19% Similarity=0.196 Sum_probs=235.6
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEE--cCCeEEEEECCCC--------e-EEEEEeecCCCceeEEEEEECCCCCeEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~--~dg~i~iwd~~~~--------~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (491)
.-+..+...|+++..+|||..+|+|+ .||.++||+.+.- . ....+.....|.+.|+|+.|+|||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34455667799999999999999999 8999999997531 1 12223344678889999999999999999
Q ss_pred EECCCeEEEEECCCCcccccccccc-ccccccc-cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTE-IHDGLDF-SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
|+.|+.|.||..........+.... .+....+ ......+|...|..++|+|++.+|++++.|++|.|||..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 9999999999987411101110000 0000000 0112346999999999999999999999999999999999999999
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc------CcEEEEEEcCCCCEEEEeeC--
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLISNGK-- 336 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~s~~~-- 336 (491)
+.+|.+.|..+.| +|-|++|++-+.|++|++|+.. .....+.+..+- ..+..+.|+|||.+|++...
T Consensus 167 l~~H~s~VKGvs~-DP~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 167 LRGHQSLVKGVSW-DPIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eecccccccceEE-CCccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999999999 5899999999999999999976 444444444432 34778999999999997543
Q ss_pred --CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc-------
Q 011179 337 --DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS------- 407 (491)
Q Consensus 337 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------- 407 (491)
-..+.|.+-.+ ...-..+-||.....+ ..|.|.+-
T Consensus 242 ~~~~~~~IieR~t----------------------------------Wk~~~~LvGH~~p~ev--vrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 242 GGKSTIAIIERGT----------------------------------WKVDKDLVGHSAPVEV--VRFNPKLFERNNKNG 285 (942)
T ss_pred CCcceeEEEecCC----------------------------------ceeeeeeecCCCceEE--EEeChHHhccccccC
Confidence 23466655443 1233445556543332 23333311
Q ss_pred --CCC----cEEEEEecCCeEEEEECCCCcEEEeec-cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 408 --TGQ----KYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 408 --~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
... ..+|+|+.|++|-||.....+++.... -....|.+++|+|||..|+.++.||+|.+..++..+.-..
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 111 168899999999999988777765543 3457899999999999999999999999999988765444
No 58
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=227.77 Aligned_cols=307 Identities=20% Similarity=0.306 Sum_probs=245.6
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|++.|+.++.......+.+++.|.+.+||.+++|.++.+ ..+|.+.|+++.|++.+.++++++.|++.+||
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence 356789999999999988888999999999999999999977664 46888999999999999999999999999999
Q ss_pred ECC------CCccccccccc-------c---------ccc--cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 011179 197 DVG------SGTMESLANVT-------E---------IHD--GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 197 ~~~------~~~~~~~~~~~-------~---------~~~--~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~ 252 (491)
... ......-.... + ..+ .+..+.....+|...|.+..|...|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 732 11000000000 0 000 11122223458999999999999999999999999999
Q ss_pred EEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEE
Q 011179 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (491)
+||+++++++..+.+|....+.++-+ |..+++++.+.|.+.++||.+ ..-..+..|++|.+.|+++.|..+. .++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999999999999986 888999999999999999998 2456778999999999999998764 689
Q ss_pred EeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcE
Q 011179 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+|+.|.+|++||++++. .++.++........+ +.+..+.+
T Consensus 373 SgSDDrTvKvWdLrNMR---------------------------------splATIRtdS~~NRv-------avs~g~~i 412 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMR---------------------------------SPLATIRTDSPANRV-------AVSKGHPI 412 (481)
T ss_pred ecCCCceEEEeeecccc---------------------------------CcceeeecCCcccee-------EeecCCce
Confidence 99999999999999975 344555444332222 34446778
Q ss_pred EEEEecCCeEEEEECCCCcEEEee-----ccCCCCeeeeEecCCCC--eEEEEeCCCcEEEEcCCCC
Q 011179 413 IYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 413 l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~--~l~s~~~Dg~v~iw~~~~~ 472 (491)
|+.--.+..|++||+. |..+..+ ++|...|.+++|..+.. -|++++.|..+.-|++...
T Consensus 413 IAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8888888999999995 4444443 48999999999987655 6889999999999998764
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=254.04 Aligned_cols=282 Identities=24% Similarity=0.343 Sum_probs=243.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+...+.|..|. ..++++++.+++|++|+..++..+.. ...+|.+.|.++++..-+.+|++|+.|.++++||..+|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 367788999998 55799999999999999999855443 35789999999999887899999999999999999999
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
.+..... +|...|.++... ...+++|+.|.+|++|++.++..+..+.+|.++|.++..+
T Consensus 282 ~C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--- 340 (537)
T KOG0274|consen 282 ECTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--- 340 (537)
T ss_pred cEEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence 9876654 577788888765 4468889999999999999999999998899999999985
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
+.++++|+.|++|++||+. ..+++..+.+|...|+++.+.+. ..+++|+.|+.|++||+++..
T Consensus 341 ~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------------ 403 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------------ 403 (537)
T ss_pred CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh------------
Confidence 7899999999999999998 88999999999999999988765 799999999999999999831
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc-CC
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HT 440 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~ 440 (491)
+++.++.+|...... ....+++|++++.|+.|++||..+++++..+.+ |.
T Consensus 404 ---------------------~c~~tl~~h~~~v~~--------l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~ 454 (537)
T KOG0274|consen 404 ---------------------KCIHTLQGHTSLVSS--------LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV 454 (537)
T ss_pred ---------------------hhhhhhcCCcccccc--------cccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence 466777777754422 222688999999999999999999999999998 67
Q ss_pred CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
+.|..+++. ...+++++.||.+++||++.+....
T Consensus 455 ~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 455 GGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 899999886 5678899999999999999887654
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6e-31 Score=214.65 Aligned_cols=254 Identities=19% Similarity=0.222 Sum_probs=210.6
Q ss_pred EeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC
Q 011179 162 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~ 240 (491)
.....+|.+.+..++|+|- |..|++++.|..|++|+...+....... ..+.+|+..|.+++|+|.|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------VLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------eccccchheeeeeeecCCCc
Confidence 3455678889999999998 8899999999999999988533211111 11236888999999999999
Q ss_pred EEEEEeCCCeEEEEECCCC--eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc
Q 011179 241 ELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
+|++++.|.++.||.-..+ +++..+.+|...|.|++|+ .+|++||+++.|..|-||.+... ....+...+++|...
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~ded-dEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDED-DEFECIAVLQEHTQD 152 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCC-CcEEEEeeecccccc
Confidence 9999999999999987644 5788899999999999998 89999999999999999998732 356788899999999
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|..+.|+|...+|++++.|.+|++|+-.... .-..+.++.+|..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------------dW~c~~tl~g~~~----- 196 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------------DWECVQTLDGHEN----- 196 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCC-------------------------------CeeEEEEecCccc-----
Confidence 9999999999999999999999999876311 1356888888874
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
..|+.+|.+.|..|++++.|++|+||...+.- -..|+.++..++|. ...|+|++.|+.|+++.-...
T Consensus 197 -TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 197 -TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred -eEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 34666788899999999999999999865221 12478899999998 458999999999999987743
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-31 Score=240.11 Aligned_cols=278 Identities=20% Similarity=0.267 Sum_probs=225.8
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
.-+.|+ ..+.||+|. ...|++|+..++.... +.... ...|+++.|+++|.+|++|..+|.|.|||..+.+.....
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~-l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTE-LCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEE-eEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 346788 455777775 4479999999885333 22222 568999999999999999999999999998876654333
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEecCCCCEEE
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
.. +|...|-+++|+ +..+.+|+.++.|..+|++..+.... +.+|...|..+.|+ ++++++|
T Consensus 256 ~~---------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lA 317 (484)
T KOG0305|consen 256 RG---------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLA 317 (484)
T ss_pred cC---------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeec
Confidence 21 277799999998 66799999999999999998876655 77899999999998 8999999
Q ss_pred EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEee--CCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
+|+.|+.+.|||.. ...++..+..|...|..++|+|- ..+||+|+ .|+.|++||..++
T Consensus 318 SGgnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--------------- 378 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--------------- 378 (484)
T ss_pred cCCCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---------------
Confidence 99999999999996 77888899999999999999994 56788765 5899999999873
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE--EecCCeEEEEECCCCcEEEeeccCCC
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSGEQVAALKYHTS 441 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~h~~ 441 (491)
..+......... .++.|++..+-|++ |..++.|.||+..+.+.+..+.+|..
T Consensus 379 -------------------~~i~~vdtgsQV-------csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 379 -------------------ARIDSVDTGSQV-------CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred -------------------cEecccccCCce-------eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 333333333322 23345556655555 34578999999999999999999999
Q ss_pred CeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 442 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 442 ~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.|..++++|||..+++|+.|.++++|++-+..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999999999999998763
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-32 Score=252.89 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=225.5
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
..|..++|+|...+++++-..|.|++||.+-+.++..+ ..|.++|..++|+|++.++++|+.|-
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF----------------deHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF----------------DEHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh----------------hccCCccceeeecCCCCeEEecCCcc
Confidence 36889999999999999999999999999887764432 25888999999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC
Q 011179 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
.|+||+..+.+++.++.+|-+.|..+.|+ +.-.+|+++|+|.+|+||+.. +.+++..+++|...|.|..|+|...
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwq----sr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQ----SRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEecc----CCceEEEEecCceEEEeeccCCccc
Confidence 99999999999999999999999999997 778899999999999999998 8899999999999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.++++|-|.+|++||+............. ....+.. ......+-.+..-.-..++||... +.-+ +|.|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~---e~~~~~~--~~~~dLfg~~DaVVK~VLEGHDRG--VNwa----AfhpT 217 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSL---EDQMRGQ--QGNSDLFGQTDAVVKHVLEGHDRG--VNWA----AFHPT 217 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCc---hhhhhcc--ccchhhcCCcCeeeeeeecccccc--cceE----EecCC
Confidence 99999999999999997754332221100 0000000 001111111122233456777732 2222 45557
Q ss_pred CcEEEEEecCCeEEEEECCCCc--EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCCcceeeee
Q 011179 410 QKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 487 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~~~~~ 487 (491)
-.+|++|+.|..|++|.+..-+ .+-+.++|.+.|.++-|+|...+++|.|.|++|+|||+..... ....+....
T Consensus 218 lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----v~tfrrend 293 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----VQTFRREND 293 (1202)
T ss_pred cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc----eeeeeccCC
Confidence 7899999999999999986544 3566789999999999999999999999999999999976532 334444455
Q ss_pred ecc
Q 011179 488 QFY 490 (491)
Q Consensus 488 ~f~ 490 (491)
+||
T Consensus 294 RFW 296 (1202)
T KOG0292|consen 294 RFW 296 (1202)
T ss_pred eEE
Confidence 555
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-29 Score=201.00 Aligned_cols=290 Identities=22% Similarity=0.302 Sum_probs=228.8
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCC------C------eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER------G------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~------~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
...|.+++|+|.|.+.|+|+...+++|..... + -........+.|++.|+|.+|+|+|.+|++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 45789999999999999999999998875432 1 01112233467889999999999999999999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeeeEEEe
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 266 (491)
+|++..+........-.- ++|. -|.+.|..++|..+ +..|++++ .|..|++-|..+++....+.
T Consensus 112 ~ik~l~fn~dt~~~~g~d------le~n-----mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD------LEFN-----MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred eEEEEecccccccccCcc------eeee-----ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 999988766554322211 1121 36668999999753 45666654 46778889999999999999
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-------ccCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
+|.+.|.++-- .++-.+++|+.|.+|++||++ ...++..+.. ..+.|.+++..|.|++|++|-.|..
T Consensus 181 ghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999988743 468899999999999999998 5555554432 2357999999999999999999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 419 (491)
..+||++. +..++.|..|....... .|||...|+++++.|
T Consensus 255 c~lydirg----------------------------------~r~iq~f~phsadir~v------rfsp~a~yllt~syd 294 (350)
T KOG0641|consen 255 CMLYDIRG----------------------------------GRMIQRFHPHSADIRCV------RFSPGAHYLLTCSYD 294 (350)
T ss_pred eEEEEeeC----------------------------------CceeeeeCCCccceeEE------EeCCCceEEEEeccc
Confidence 99999998 57788888887443332 577789999999999
Q ss_pred CeEEEEECCCC----cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 420 SCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 420 g~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
..|++-|+... -.+..+..|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999998532 1234455799999999999999999999999999999875
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-30 Score=239.28 Aligned_cols=338 Identities=18% Similarity=0.191 Sum_probs=264.5
Q ss_pred ccccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC
Q 011179 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (491)
.+...++++.+.-.+...+++|++.|+.+-|..+.++|++.+.|+.|++||+.+..+.... -.|++.|..+++.+
T Consensus 127 kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th---vd~r~Eiw~l~~~~-- 201 (888)
T KOG0306|consen 127 KDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH---VDHRGEIWALVLDE-- 201 (888)
T ss_pred CCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE---ecccceEEEEEEec--
Confidence 4566778899999999999999999999999998899999999999999999998666544 46677899999987
Q ss_pred CeEEEEECCCeEEEEECCCCc------------------------cc--------------------ccccccc------
Q 011179 182 RHLVYASMSPIVHIVDVGSGT------------------------ME--------------------SLANVTE------ 211 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~------------------------~~--------------------~~~~~~~------ 211 (491)
+.+++++.|+.+++|++.... .. ..+.+..
T Consensus 202 ~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k 281 (888)
T KOG0306|consen 202 KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAK 281 (888)
T ss_pred ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHH
Confidence 789999999999999981100 00 0000000
Q ss_pred -----------ccc------c-------------------------------cc---------------ccc--------
Q 011179 212 -----------IHD------G-------------------------------LD---------------FSA-------- 220 (491)
Q Consensus 212 -----------~~~------~-------------------------------~~---------------~~~-------- 220 (491)
... + .. .+.
T Consensus 282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~ 361 (888)
T KOG0306|consen 282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEA 361 (888)
T ss_pred HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccc
Confidence 000 0 00 000
Q ss_pred -----cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 221 -----ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 221 -----~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
....||...|.+++++.+...+++|+ .+.+.+|+..+.++++++... .+.+..|. |.++++++|...|.+.
T Consensus 362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fv-pgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 362 DRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFV-PGDRYIVLGTKNGELQ 437 (888)
T ss_pred cccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEec-CCCceEEEeccCCceE
Confidence 01238999999999999887666664 567999999999999998653 88999998 7889999999999999
Q ss_pred EEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
+||+. ....+....+|.+.|++++.+||++.+++|+.|.+|++||..-....+..
T Consensus 438 vfdla----S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt--------------------- 492 (888)
T KOG0306|consen 438 VFDLA----SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT--------------------- 492 (888)
T ss_pred EEEee----hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc---------------------
Confidence 99998 77778888899999999999999999999999999999998653221000
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeE
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 455 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 455 (491)
...+..+.. ...-.+..-..+..+||||++|+++--|++|.||-+.+.+..-.+.+|.-||.++..|||++++
T Consensus 493 ------~~k~lsl~~-~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 493 ------QKKVLSLKH-TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred ------cceeeeecc-ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeE
Confidence 011111111 1111222333455788899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEcCCCCCCCCCCCC
Q 011179 456 VSSSWDGDVVRWEFPGNGEAAPPLN 480 (491)
Q Consensus 456 ~s~~~Dg~v~iw~~~~~~~~~~~~~ 480 (491)
+||+.|..|+||-++-++.......
T Consensus 566 vTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred EeccCCCceEEeccccchhhhhhhc
Confidence 9999999999999999887655443
No 65
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.1e-30 Score=243.77 Aligned_cols=296 Identities=17% Similarity=0.182 Sum_probs=217.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEE----------EeecCCCceeEEEEEECC-CCCeEEEEECC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----------DILAKSLRWTVTDTSLSP-DQRHLVYASMS 190 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d 190 (491)
.+-..|.....++|+..+++++.+.....|+...+..+.. .....+|.+.|.+++|+| ++++|++++.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3455667777888877778887777777887655422211 112457888999999999 88999999999
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
++|++||+.++....... -......+|...|.+++|+|++ ++|++++.|+.|+|||+.+++.+..+..|.
T Consensus 98 gtIkIWdi~~~~~~~~~~---------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNIS---------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CEEEEEecCCCccccccC---------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 999999997653211100 0011124688899999999975 689999999999999999999988898999
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc-EEEEEEcCCCCEEEEee----CCCcEEEEe
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWD 344 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~----~dg~i~iwd 344 (491)
..|.+++|+ +++++|++++.|++|++||++ .+..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||
T Consensus 169 ~~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 169 DQITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 999999998 789999999999999999998 67778888888765 44677898888887654 478999999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~ 423 (491)
+++... .+.....+.. .....+.|++++++|++++. |+.|+
T Consensus 244 lr~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 244 TRKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 987431 1222211111 11223467789999998874 99999
Q ss_pred EEECCCCcEEEeecc-CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 424 VYDLVSGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 424 iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+||+.+++.+..+.. +..++..++|.|.-..=+.. --..++|.+..
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~--~Ei~r~~~l~~ 332 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRK--CEIARFYALTY 332 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEecccccccccc--eeeeEEEEecC
Confidence 999999988776643 45678899999854321111 12346666654
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=231.56 Aligned_cols=296 Identities=12% Similarity=0.136 Sum_probs=235.6
Q ss_pred CccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
...|.+|.+.|+|++=+|.. ..+|+|+.||.|+|||+.....+. ....|.+.|..|++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cceEEecCCcceee
Confidence 34568999999999999987 789999999999999998864444 3467888999999986 67889999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|.++.. ....+. ....+..+.-+..+..+++++.+ |.|||.....++..+.-....|.++
T Consensus 134 wk~~~~-p~~til-----------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL-----------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred eeccCC-cceeee-----------------ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEE
Confidence 998763 111111 11245566666667778888754 9999999999999998888899999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
.|+|....+|++++.|+.|.+||++ ...++..+.- .-.-+.|+|+|.+-.+++++.|..++.||++...
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~------ 262 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLR----QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS------ 262 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecc----cCCccceeee-eccccceecCccccceeeccccccceehhhhhhc------
Confidence 9998888999999999999999999 6666554432 2344679999988889999999999999999864
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
.++..+.+|. ....+..|||.|+-+++|+.|.+|+||....+.-...
T Consensus 263 ---------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 263 ---------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred ---------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 5666666766 3334557888999999999999999999987765443
Q ss_pred ec-cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCCc
Q 011179 436 LK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK 481 (491)
Q Consensus 436 ~~-~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~ 481 (491)
+. .-...|.++.||.|.+++++|++|+.|++|.-...++..+...+
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r 356 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPR 356 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence 32 12357999999999999999999999999998877665554433
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.2e-30 Score=263.58 Aligned_cols=274 Identities=15% Similarity=0.201 Sum_probs=212.6
Q ss_pred CCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccC
Q 011179 145 ASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
+|.+++|+..+........ ....|...|.+++|+|++++|++|+.|+.|+||+.......... . + .....
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~-~---~----~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD-I---H----YPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc-c---c----cceEE
Confidence 6778888887643322111 12347778999999999999999999999999997642110000 0 0 00000
Q ss_pred CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccc
Q 011179 223 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 301 (491)
..+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.|++|++||++
T Consensus 529 -~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~- 606 (793)
T PLN00181 529 -LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN- 606 (793)
T ss_pred -ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-
Confidence 01223789999987 578999999999999999999999999999999999999986688999999999999999998
Q ss_pred ccCCCceeeEeccccCcEEEEEEc-CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCC
Q 011179 302 LNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
.+..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||+++..
T Consensus 607 ---~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------------------------------- 651 (793)
T PLN00181 607 ---QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------------------------------- 651 (793)
T ss_pred ---CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------------------------
Confidence 56666666644 678999995 579999999999999999998632
Q ss_pred CCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC------CcEEEeeccCCCCeeeeEecCCCCe
Q 011179 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------GEQVAALKYHTSPVRDCSWHPSQPM 454 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~~ 454 (491)
..+..+.+|..... .+. |. ++.+|++++.|+.|++||+.. ..++..+.+|...+..++|+|++.+
T Consensus 652 --~~~~~~~~h~~~V~--~v~----f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 652 --LPLCTMIGHSKTVS--YVR----FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred --ccceEecCCCCCEE--EEE----Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 23344556653322 222 22 578999999999999999974 3567889999999999999999999
Q ss_pred EEEEeCCCcEEEEcCCCC
Q 011179 455 LVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 455 l~s~~~Dg~v~iw~~~~~ 472 (491)
|++|+.||.|++|+....
T Consensus 723 lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 723 IATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999997644
No 68
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=219.33 Aligned_cols=311 Identities=16% Similarity=0.170 Sum_probs=222.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-----EEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCC
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~ 191 (491)
-.|.+|...|++++||.||++||+++.|++|+||+++.-. .+... ...+ ..+.++|+||-+-+++.. ...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~d---hpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYD---HPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCC---CceEEEECCCcceEEEEEccCC
Confidence 4578999999999999999999999999999999987521 11111 1112 478899999987766554 455
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
.+++|.+...+--.........+.+.| ...|...+..+-.-..+++|++++.|..|.+|++. |+.+..+......
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEEEeeecccCCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 899998754332111111101111111 23466678888888889999999999999999998 8888888766666
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEeccccc----CCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
-+..+.+ |+|+++++++..--|++|.+-... ..-..+..+.+|...|..++|+|+...+++.+.||.++|||..-
T Consensus 231 n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 6777887 899999999999999999874211 12234567899999999999999999999999999999999865
Q ss_pred CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
.....+ +.+ .+..... .....-.....+..+|.|+.||.+. ...+.+|..
T Consensus 310 rY~~~q-------------------Dpk--------~Lk~g~~--pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s 359 (420)
T KOG2096|consen 310 RYEAGQ-------------------DPK--------ILKEGSA--PLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS 359 (420)
T ss_pred eEecCC-------------------Cch--------HhhcCCc--chhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence 221111 000 1111100 0000000011235677899887665 456999999
Q ss_pred CCCcEEEeec-cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 428 VSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 428 ~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
++|+..-.++ .|...|.+++|+++|++++|++ |..+++..-
T Consensus 360 e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 9998877764 7999999999999999999997 678888763
No 69
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-30 Score=215.77 Aligned_cols=301 Identities=16% Similarity=0.242 Sum_probs=232.6
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEECC-CCCe
Q 011179 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQRH 183 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~~~ 183 (491)
-....|.+.|+++.+.+ .|+++++|+.||.|.|||++... .+.......+|+..|..+.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 44567899999999998 58999999999999999997642 1112233457888999999999 5567
Q ss_pred EEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCe
Q 011179 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 184 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+.+++.|.+++|||..+-+....++++. .|++-+++|- ..++|+|..+-.|++.|+.+|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 8889999999999999877665555443 6888888883 4578889999999999999999
Q ss_pred eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc-----------CCCceeeEeccccCcEEEEEEcCCCC
Q 011179 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----------VKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 261 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
....+.+|.+.|.++.|+|...-.|++|+.||.|++||++... .....++.-..|.+.|..++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 9999999999999999998888889999999999999998320 01112223456888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
++++++.|..+++|+..++....... ++.+..-+.+.. .. .. + .+
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~--------------------------g~~~~n~~~~~~-~~-~~---~----~~ 304 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREF--------------------------GPIIHNQTTSFA-VH-IQ---S----MD 304 (397)
T ss_pred hhhhccCccceEEeecccCccccccc--------------------------ccccccccccce-EE-Ee---e----cc
Confidence 99999999999999998865322110 011111011110 00 11 1 13
Q ss_pred CcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
...++---.++.+.++++-++..+..+..|-..|.+..+-|+-+...++..|+.|..|-..
T Consensus 305 s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 305 SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 3334444456889999999999999999999999999999999999999999999999873
No 70
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.5e-31 Score=241.60 Aligned_cols=339 Identities=22% Similarity=0.256 Sum_probs=243.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-----------CCeEEEEECCCeEEE
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHI 195 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~d~~i~i 195 (491)
..++.|+|....|.+...|..++|||++.-.++.+....-.|...|..+.--|- ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 467899999999999999999999999987666665555566667777765551 124889999999999
Q ss_pred EECCCCccccccc----------ccccccccc-----------ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011179 196 VDVGSGTMESLAN----------VTEIHDGLD-----------FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (491)
Q Consensus 196 w~~~~~~~~~~~~----------~~~~~~~~~-----------~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vw 254 (491)
|+++.+....+.. +........ -......+.+..+.+++.+|+|++||+|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9998643222210 000000000 0001112446689999999999999999999999999
Q ss_pred ECCCCeeeEEEeccCCCeeEEEEecCC--CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC--CE
Q 011179 255 DLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RY 330 (491)
Q Consensus 255 d~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~ 330 (491)
++...+....+..|...|.|+.|+-|. .++|++++.|..|.|||+. .+..++..+.+|...|+++.|--+| ..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceE
Confidence 999998888899999999999998443 5789999999999999986 2556777888888888888887666 66
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCc-cceeeeeeecCCCCC------------ccccCCCCceEEEEeCCcee-Ee
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFR-SYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSVL-RT 396 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~ 396 (491)
+++++.|..|.+--.++......+..... .....+..+...|.. +.+....++..+.|++.... ..
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 77777777654432222111111100000 000111222222222 22233345666777765433 45
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+++.... |.|.||++.+.|.++.++|..+|+++.+..+|...|+.+.|.+|.+.|++.+.||.|.||.++..
T Consensus 644 lIKv~lD----PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 644 LIKVILD----PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred eEEEEEC----CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 5555444 48999999999999999999999999999999999999999999999999999999999998763
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-30 Score=227.45 Aligned_cols=305 Identities=17% Similarity=0.181 Sum_probs=236.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--------------ec-CCCceeEEEEEECCCC
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~ 181 (491)
...+..|.-+|.|++++||++++++++.+|+|.-|++.++....... .. ..|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 35667899999999999999999999999999999999885331111 11 2677789999999999
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
+||++|+.|..|.||+.++.+....+ .+|.+.|.+++|-.....|++++.|+.|++|+++....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~----------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVF----------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcc----------------cccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 99999999999999999998765542 36888999999999888999999999999999999999
Q ss_pred eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEE
Q 011179 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 262 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 341 (491)
+.++.+|.+.|..|... .-++.+-+|+.|+++++|++. ......+.+|.+.+-|++|-. ..++++|+.+|.|.
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 99999999999999986 667777778899999999994 334446778888999999984 45899999999999
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCe
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 421 (491)
+|++.+..........+. ..... .. ........+++..|...++++|+.+|.
T Consensus 352 LWs~~KKkplf~~~~AHg---------------------v~~~~------~~-~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHG---------------------VIPEL------DP-VNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EeeecccCceeEeecccc---------------------ccCCc------cc-cccccceeeeEecccCceEEecCCCCc
Confidence 999988543322111000 00000 00 000023344456678899999999999
Q ss_pred EEEEECCCC----cEEEeeccCCCCeeeeEecCCCCeEEEE-eCCCcEEEEcCCCCC
Q 011179 422 VYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 473 (491)
Q Consensus 422 i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~s~-~~Dg~v~iw~~~~~~ 473 (491)
|++|-+..+ +++..+. -.+-|++++|+++|+.|++| +..-.+--|-.....
T Consensus 404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 999999887 3455554 56889999999999955554 555556556554443
No 72
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.2e-29 Score=231.26 Aligned_cols=247 Identities=30% Similarity=0.452 Sum_probs=209.8
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+|..+|.+++|+|++++|++++.+|.|++|++.+++..... ..|...+..+.|+|++++++++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL----------------KGHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE----------------ecCCcceeEEEECCCCCEEEEE
Confidence 367779999999999999999999999999999877532221 1345578899999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
+.+|.|++||+.+++.+..+..|...+.++.|+ ++++++++++.|+.|++||++ ..+....+..|...+.++.|+
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEc
Confidence 999999999999988888888999999999998 667888888889999999997 677777888899999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|++.++++++.++.|++||++.. ..+..+..+.. ...++.
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~----------------------------------~~~~~~~~~~~------~i~~~~ 184 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTG----------------------------------KCVATLTGHTG------EVNSVA 184 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEcccc----------------------------------ccceeEecCcc------ccceEE
Confidence 99999998888999999999862 33344444431 122335
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 406 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++|+++.+++++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.||.|++|++....
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 67789899999999999999999999999998899999999999998899888889999999998654
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=218.41 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=219.0
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
....|...|.+++.+|+.+++++|+.|..-.+|++.++..... ..+|+..|+++.|+.||.+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e----------------ltgHKDSVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE----------------LTGHKDSVTCCSFSHDGTLLA 122 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE----------------ecCCCCceEEEEEccCceEEE
Confidence 4467888999999999999999999999999999999884322 237888999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+|..+|.|+||...++.....+...-..+.-+.|+ |.+.+|++|+.||.+-+|.+. +....+.+.+|..++++=.
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECC----CcceeeEecCCCCCccccc
Confidence 99999999999999999888887667888999997 789999999999999999997 5578889999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc------------ccCCCCceEEEEeCC
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD------------LKHPCDQSVATYKGH 391 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 391 (491)
|.|+|+.++++..||+|++||+.+.+......... .....++.....+.. +....++.+....+.
T Consensus 198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred ccCCCceEEEEecCceEEEEecCCCceeEEecccc---cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 99999999999999999999999875433322100 000011111111111 111122223333210
Q ss_pred c-----eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 392 S-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 392 ~-----~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
. .......+.-+..+|..=.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.||.|+.
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEe
Confidence 0 000111122223355566789999999999999999888887776 888999999998 679999999999999
Q ss_pred EcCCCCCC
Q 011179 467 WEFPGNGE 474 (491)
Q Consensus 467 w~~~~~~~ 474 (491)
||.+.+..
T Consensus 353 wDaRtG~l 360 (399)
T KOG0296|consen 353 WDARTGQL 360 (399)
T ss_pred eeccccce
Confidence 99998864
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=1.1e-29 Score=220.19 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=234.3
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...|.++...|..+.+++|+.|..+.++|...++. +....+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 35688888888878999999999999999988733 345688999999999999999999999999999999876553
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc--CCCeeEEEEecCC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDES 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 281 (491)
.... ..|..+|+.+..+|.|.||++++.|+...+.|+.++..+...... .-.+++.+|+ ||
T Consensus 296 ~~~~----------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pD 358 (506)
T KOG0289|consen 296 PTSS----------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PD 358 (506)
T ss_pred cccc----------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CC
Confidence 2221 236669999999999999999999999999999999987766432 2458999996 99
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
|.+|.+|..||.|+|||+. ....+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|+...
T Consensus 359 gLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----------- 423 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----------- 423 (506)
T ss_pred ceEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----------
Confidence 9999999999999999998 6678889999999999999999999999999999999999998442
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC--CCcEEEeeccC
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGEQVAALKYH 439 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h 439 (491)
+.++...... .+.. ..|...|.+|+.++.|=.|++++-. +..++..+..|
T Consensus 424 -----------------------~kt~~l~~~~-~v~s----~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 424 -----------------------FKTIQLDEKK-EVNS----LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred -----------------------cceeeccccc-ccee----EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 2222222211 1222 2455589999999888777777743 45677888889
Q ss_pred CCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 440 ~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+..+.+.|....+++++++.|..++++.+
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999999998865
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4e-31 Score=220.99 Aligned_cols=256 Identities=19% Similarity=0.259 Sum_probs=213.2
Q ss_pred ceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 011179 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d 248 (491)
...+.|..|+|||++|++|+.||.|.+||.-+|+...-.+..... ..--+..+|.|+.|+.|..+|++|+.|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------NFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------ceeecccceEEEeecccHHHhhccCcC
Confidence 346889999999999999999999999999999875544332211 111245589999999999999999999
Q ss_pred CeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 249 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
|.|++|.+.+|.+++++. .|...|+|+.|+ .++..+++++.|.++++.-+. .++++..+.+|.+.|+...|.++
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCC
Confidence 999999999999999987 899999999998 888899999999999999998 89999999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
|.++++++.||+|++|+..+.. ++.+|+......++.....-|.
T Consensus 360 G~~iisaSsDgtvkvW~~Ktte----------------------------------C~~Tfk~~~~d~~vnsv~~~PK-- 403 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTE----------------------------------CLSTFKPLGTDYPVNSVILLPK-- 403 (508)
T ss_pred CCeEEEecCCccEEEecCcchh----------------------------------hhhhccCCCCcccceeEEEcCC--
Confidence 9999999999999999998843 4444444333333444443333
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeecc---CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+...++++...++|+|.++ .|+.+..+.. ..+...+++.||.|.++...+.|+.++.+.+.++...
T Consensus 404 -npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 404 -NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred -CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 5567888999999999998 6777777752 3466778899999999999999999999999888654
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.8e-31 Score=233.28 Aligned_cols=255 Identities=18% Similarity=0.244 Sum_probs=209.9
Q ss_pred EeecCCCceeEEEEEECC-CCCeEEEEECCCeEEEEECCC-CccccccccccccccccccccCCCCceecEEEEEEcCCC
Q 011179 162 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 162 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 239 (491)
.....+|...|+++.|.| .+.+|++++.|+.|+||++-. +.++..+ .||..+|.+++|+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----------------~gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----------------KGHRKPVRDASFNNCG 270 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh----------------hcchhhhhhhhccccC
Confidence 345678999999999999 889999999999999999876 5544433 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcE
Q 011179 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+++++.|+.|++||+++|+++.++. ....++|+.|.|.+.+.+++|+.|+.|+.||+| .++.++.+..|.+.|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAI 345 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhe
Confidence 999999999999999999999998884 356789999986666999999999999999999 888999999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
..+.|-++|+.+++.+.|+.++||+.+...... +.......+
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-----------------------------------~i~~~~~hs--- 387 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-----------------------------------NIADPEMHT--- 387 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccch-----------------------------------hhcchhhcc---
Confidence 999999999999999999999999998743211 111110011
Q ss_pred EEecccccCCCcEEEEEecCCeEEEEECCCCc---EEEeeccCC--CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~h~--~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
..++...|+++++++-+.|+.|.+|.+...- ....+++|. +.-..+.|||||.+|++|+.||.+.+||..+-..
T Consensus 388 -mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 388 -MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred -CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 1222466799999999999999999975432 234566775 5567789999999999999999999999987654
Q ss_pred CC
Q 011179 475 AA 476 (491)
Q Consensus 475 ~~ 476 (491)
..
T Consensus 467 ~~ 468 (503)
T KOG0282|consen 467 VS 468 (503)
T ss_pred hh
Confidence 43
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=207.43 Aligned_cols=278 Identities=14% Similarity=0.136 Sum_probs=217.0
Q ss_pred CCceEEEEEcC-CCCEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+.|.+++||| ...++++++.||+||+|+++. |.... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 78999999999 556777999999999999987 33333 344677889999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+...+. .|..+|.++.|-+... .|++|+.|.+|+.||.+...++.++. -...+.++..-
T Consensus 105 Q~~~v~-----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~- 165 (347)
T KOG0647|consen 105 QVSQVA-----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL- 165 (347)
T ss_pred Ceeeee-----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc-
Confidence 765443 3777999999988655 89999999999999999988887774 35566776553
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCC
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
..+++.+..+..|.+|+++... ...+.. ....-.+.|++..++....+.|+-+|.+.|..+.....
T Consensus 166 --~pm~vVata~r~i~vynL~n~~---te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------- 232 (347)
T KOG0647|consen 166 --YPMAVVATAERHIAVYNLENPP---TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------- 232 (347)
T ss_pred --CceeEEEecCCcEEEEEcCCCc---chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--------
Confidence 4588889999999999997221 111111 12234588999988888889999999999999877432
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE---eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
..-.+|+.|+... ..+-.+.+.+|.|.-..|++++.||++.+||-.....+..
T Consensus 233 ------------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 233 ------------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ------------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 1223444444211 1123344556677788999999999999999988888888
Q ss_pred eccCCCCeeeeEecCCCCeEEEEe
Q 011179 436 LKYHTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 436 ~~~h~~~v~~~~~sp~~~~l~s~~ 459 (491)
.+.|..+|++++|+.+|.++|-+.
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEEe
Confidence 889999999999999999887663
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-29 Score=206.83 Aligned_cols=251 Identities=20% Similarity=0.264 Sum_probs=201.6
Q ss_pred ceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-
Q 011179 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 247 (491)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~- 247 (491)
...|+++.|+++|.+|++++.|.+++|||..+++.......+ +..+..++|......++.++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk----------------kyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK----------------KYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc----------------cccccEEEEecCCceEEEccCC
Confidence 447999999999999999999999999999999876655432 236778888877777777776
Q ss_pred -CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 248 -DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 248 -dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
|.+|+..++.+++.++.+.+|...|+.++.+ |.+..+++++.|++|++||++ ..++...+.. ..-..++|.|
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~--~~~pi~AfDp 150 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNL--SGRPIAAFDP 150 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEec--CCCcceeECC
Confidence 8899999999999999999999999999998 556899999999999999998 4444444432 2334578999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
+|-++|++...+.|++||+|.... .+..++.-... ...-...+.|
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dk--------------------------------gPF~tf~i~~~---~~~ew~~l~F 195 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDK--------------------------------GPFTTFSITDN---DEAEWTDLEF 195 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCC--------------------------------CCceeEccCCC---CccceeeeEE
Confidence 999999999888999999998643 23333322210 0111223468
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCe---eeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
||||++|+.+...+.+++.|.-+|..+..+..+...- .+.+|+||++++++|+.||+|.+|++.++.+...
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 8899999999999999999999999999988765433 5789999999999999999999999988765533
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-30 Score=220.04 Aligned_cols=293 Identities=18% Similarity=0.293 Sum_probs=230.9
Q ss_pred CCCccccchhhhhhhhhcC-----CCCCCcccc---ccccccccccCCCCC---CccccCCCCceEEEEEcCCCCEEEEE
Q 011179 74 GKRHLPVSTVKMLAGREGN-----YSGRGRFSA---ADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAG 142 (491)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~h~~~i~~~~~s~dg~~la~~ 142 (491)
++...|.....++..+-.. ++++|+|-+ .++..+.+...+... ..++.+|..+|..+.||||.++|++|
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 3455555666666654332 367776543 455566666655544 57889999999999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccC
Q 011179 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 143 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
+.+..+.+||+.+|...... ..++...+.+++|.|||..+++|+.|+.+..||++......-..+..
T Consensus 288 g~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~----------- 354 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD----------- 354 (519)
T ss_pred CchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc-----------
Confidence 99999999999999665543 34456789999999999999999999999999998655322221111
Q ss_pred CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccc
Q 011179 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 302 (491)
..|.+++.++||+++++.+.|..|++++.++......+ ....+|++++.+ .+++++++--.+..+++||+.
T Consensus 355 -----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS-~d~k~~LvnL~~qei~LWDl~-- 425 (519)
T KOG0293|consen 355 -----PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE-- 425 (519)
T ss_pred -----ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEc-CCCcEEEEEcccCeeEEeecc--
Confidence 16999999999999999999999999999887654433 456789999998 899999999999999999998
Q ss_pred cCCCceeeEeccccCc--EEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 303 NVKGKPAGVLMGHLEG--ITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
....+..+.||... +-.-+|-. +..++++|++|+.|+||+..+
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------------------- 471 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------------------- 471 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC--------------------------------
Confidence 77888888898765 22334543 557999999999999999988
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
+.++..+.||. .++..+.|+|+ +...+|+++.||+|+||-...
T Consensus 472 --gkll~~LsGHs--~~vNcVswNP~---~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 --GKLLAVLSGHS--KTVNCVSWNPA---DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred --CceeEeecCCc--ceeeEEecCCC---CHHHhhccCCCCeEEEecCCc
Confidence 68899999998 55555666776 778899999999999998653
No 80
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-28 Score=233.98 Aligned_cols=257 Identities=19% Similarity=0.250 Sum_probs=193.5
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg 249 (491)
.|.....++++..+++++.+.....|+...+... ........ .........+|.+.|.+++|+| ++++|++|+.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eecccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4666667778777888888888888987655321 11111000 0011122457999999999999 889999999999
Q ss_pred eEEEEECCCC-------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 250 CIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 250 ~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
+|++||+.++ +.+..+.+|...|.+++|+|..+++|++++.|++|++||++ .+..+..+.+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEE
Confidence 9999999765 34667889999999999985556899999999999999998 677788888999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEe
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+|+|+|.+|++++.|+.|++||+++ +..+..+.+|..... ..+.
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rs----------------------------------g~~v~tl~~H~~~~~-~~~~- 218 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRD----------------------------------GTIVSSVEAHASAKS-QRCL- 218 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCC----------------------------------CcEEEEEecCCCCcc-eEEE-
Confidence 9999999999999999999999987 345556666653221 1233
Q ss_pred cccccCCCcEEEEEe----cCCeEEEEECCCCc-EEEeeccC-CCCeeeeEecCCCCeEEEEe-CCCcEEEEcCCCCC
Q 011179 403 SPVYSTGQKYIYTGS----HDSCVYVYDLVSGE-QVAALKYH-TSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 473 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~~~~~ 473 (491)
|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++||+..+.
T Consensus 219 ---w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 219 ---WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ---EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 334566666543 47899999998754 34444333 34566678999999998887 59999999998765
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-30 Score=206.68 Aligned_cols=245 Identities=17% Similarity=0.243 Sum_probs=199.7
Q ss_pred CCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+.++.++|+++. +.+++++.||++++||+... ...+...+.|...|.++.|++. ++.+++++.|++|++|+...+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 6789999999975 67889999999999996543 3344566788889999999984 567778899999999998766
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
+.+..+ .||...|...+|+| ..+.+++++.|+.+++||++.......+..|...+.|+.|+.-
T Consensus 138 ~Sv~Tf----------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 138 NSVQTF----------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred cceEee----------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 554432 36888999999999 6779999999999999999876555568899999999999988
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
+.+.+++|+.|+.|+.||++. -..++..+.+|.-.|..++|||. ..+|++++.|-+++|||.....
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------- 268 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------- 268 (311)
T ss_pred CCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------
Confidence 899999999999999999984 34678889999999999999996 4578999999999999997632
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
..+.++..|. ..+...-|++. ++.++|+.+.|+.++||+.
T Consensus 269 -----------------------s~~e~~~~Ht--EFv~g~Dws~~---~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----------------------SAIETVDHHT--EFVCGLDWSLF---DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhhhccc--eEEeccccccc---cCceeeecccccceeeecc
Confidence 3344444454 22333344443 6789999999999999984
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=219.79 Aligned_cols=263 Identities=22% Similarity=0.366 Sum_probs=215.8
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccc---ccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
..|+-+|.+++++|++++.++++.+++|.-|++.++......-... ...+..+.... .+|...+.+++.++||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEE
Confidence 4566689999999999999999999999999999887542211110 11122223332 4799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
++|+.|..|.||+..+.+.+..+.+|.+.|.+++|- ...+.+++++.|+.|++|++. ....+..+.+|.+.|..|
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCccceeee
Confidence 999999999999999999999999999999999996 777889999999999999998 777888999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEe
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
....-++.+-+|+.|.++++|++.. ..-..|.++........+.
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~I- 336 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAFI- 336 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEEe-
Confidence 9888888888888999999999954 3444555554333222222
Q ss_pred cccccCCCcEEEEEecCCeEEEEECCCCcEEEeec-cC-----------CCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h-----------~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+...+++|+.+|.|.+|++...+++.+.+ +| ...|++++..|...++++|+.+|.|++|.+.
T Consensus 337 ------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 337 ------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 56789999999999999999988887664 22 1278999999999999999999999999999
Q ss_pred CCCCCC
Q 011179 471 GNGEAA 476 (491)
Q Consensus 471 ~~~~~~ 476 (491)
.+-...
T Consensus 411 ~g~r~i 416 (479)
T KOG0299|consen 411 DGLRAI 416 (479)
T ss_pred CCcccc
Confidence 885443
No 83
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=228.62 Aligned_cols=257 Identities=18% Similarity=0.220 Sum_probs=189.9
Q ss_pred EEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCCccccccccccccccccccc
Q 011179 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 142 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++..... .... ..
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ 118 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence 56688999999876533 3345688889999999997 78999999999999999976432100 0000 00
Q ss_pred cCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEec
Q 011179 221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 221 ~~~~~h~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 299 (491)
....+|...|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+ +++.+|++++.|+.|+|||+
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 112367789999999999875 4688999999999999998777664 66789999998 88999999999999999999
Q ss_pred ccccCCCceeeEeccccCcEEE-----EEEcCCCCEEEEeeCCC----cEEEEeCCCCCCcccccCCCccceeeeeeecC
Q 011179 300 RCLNVKGKPAGVLMGHLEGITF-----IDSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
+ .+..+..+.+|.+.+.. ..|++++.+|++++.|+ .|+|||++...
T Consensus 197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------------------- 251 (568)
T PTZ00420 197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------------------- 251 (568)
T ss_pred C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---------------------
Confidence 8 77788888899876543 23568889999988774 79999998632
Q ss_pred CCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--cCCCCeeeeEe
Q 011179 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSW 448 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~ 448 (491)
.++..+..+.....+..... ++++.++++|+.|+.|++|++..+.. ..+. .+..++.+++|
T Consensus 252 ------------~pl~~~~ld~~~~~L~p~~D----~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 252 ------------SALVTMSIDNASAPLIPHYD----ESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGF 314 (568)
T ss_pred ------------CceEEEEecCCccceEEeee----CCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEE
Confidence 23333322221122211111 23688999999999999999987643 2232 25678999999
Q ss_pred cCCCC
Q 011179 449 HPSQP 453 (491)
Q Consensus 449 sp~~~ 453 (491)
.|+..
T Consensus 315 ~Pkr~ 319 (568)
T PTZ00420 315 LPKQI 319 (568)
T ss_pred ccccc
Confidence 99753
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.5e-29 Score=212.00 Aligned_cols=271 Identities=19% Similarity=0.278 Sum_probs=209.4
Q ss_pred CCCCCccccCCCCceEEEEEcCCC---CEEEEEEcCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEECCCCCeEEEEE
Q 011179 113 PVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 113 ~~~~~~~~~~h~~~i~~~~~s~dg---~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (491)
..+....+.+|.++|..++|--.. ..|++++.|.++++|..+.+....+ .....+|...|.++...+++..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 344456788999999988774433 3599999999999999987743322 223358999999999999999999999
Q ss_pred CCCeEEEEECCCCcccccccc---------ccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 189 MSPIVHIVDVGSGTMESLANV---------TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 189 ~d~~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.|.+|.||+..+......... .....+...+.....||+.+|.++.|++ ...+++++.|.+|++||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 999999999433221111111 1111122223344569999999999998 567999999999999999999
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCC
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQ 338 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg 338 (491)
....++.+ ...++|+.++ +..++|++|+.|..+++||.|... .......+.+|...|.++.|+|.. .+|++++.|+
T Consensus 292 ~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 292 GLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 99888754 5678999998 688999999999999999999663 445667889999999999999964 5688999999
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
++++||+|+.. .++..+.+|. ..+....|. ++.+|++|+.
T Consensus 369 t~klWDvRS~k---------------------------------~plydI~~h~--DKvl~vdW~-----~~~~IvSGGa 408 (423)
T KOG0313|consen 369 TVKLWDVRSTK---------------------------------APLYDIAGHN--DKVLSVDWN-----EGGLIVSGGA 408 (423)
T ss_pred eEEEEEeccCC---------------------------------CcceeeccCC--ceEEEEecc-----CCceEEeccC
Confidence 99999999843 3566666665 333333333 5779999999
Q ss_pred CCeEEEEEC
Q 011179 419 DSCVYVYDL 427 (491)
Q Consensus 419 dg~i~iwd~ 427 (491)
|.+|+|+..
T Consensus 409 D~~l~i~~~ 417 (423)
T KOG0313|consen 409 DNKLRIFKG 417 (423)
T ss_pred cceEEEecc
Confidence 999999864
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.7e-28 Score=224.90 Aligned_cols=284 Identities=17% Similarity=0.264 Sum_probs=231.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEECC-CCCeEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~~l~~~~~d~~i~ 194 (491)
...+.+|...|..+++.+.. .+++++.||++++|+-..++.+... ...++.+-|.. +++.+ ++-.|++|+.|..|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~-~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH-AFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce-ecccCcceeeccceeccccCcceEeecccceEE
Confidence 45678999999999987655 7899999999999998665444332 33445555655 77775 445699999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+|........... .||...|.++....++. +++|+.|.++++|-.. ++...+.+|...|.+
T Consensus 85 v~~~~~~~P~~~L----------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 85 VFKLSQAEPLYTL----------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWA 145 (745)
T ss_pred EEecCCCCchhhh----------------hccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheee
Confidence 9999877664433 37888999999888887 9999999999999754 455568899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+... +++ .+++|+.|.+|++|. .++.+..+.+|.+-|+.+++-+++ .|++++.||.|++|++..
T Consensus 146 v~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------- 209 (745)
T KOG0301|consen 146 VASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------- 209 (745)
T ss_pred eeec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-------
Confidence 9987 444 889999999999998 568889999999999999998765 589999999999999954
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
..+..+.+|......+ ....++..++++++|++++||+.. ++.+
T Consensus 210 ----------------------------e~l~~~~ghtn~vYsi------s~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 210 ----------------------------EVLLEMHGHTNFVYSI------SMALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred ----------------------------ceeeeeeccceEEEEE------EecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 7888899998544433 445578899999999999999965 7777
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+......|+++.+-++|. |++|+.||.|+||.......
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 7775566899999998886 77888999999999875543
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=220.03 Aligned_cols=347 Identities=16% Similarity=0.252 Sum_probs=266.0
Q ss_pred hhhhhcccccccccccccccccCCcccccCC-CCcchhHHHHHHhhcccCCccccccc-cCCCCccccchhhhhhhhhcC
Q 011179 15 YAMSRFEIESEFYDAADTVNQASNSRSKFKK-PLSALDHEIAQLTKLKSEPKEHFSKE-VPGKRHLPVSTVKMLAGREGN 92 (491)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (491)
||.....++++..+++.+.+++.+++.++.. ....|+.....+++++.++.+..... +....++|...+.+.+|....
T Consensus 157 WA~~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~ 236 (514)
T KOG2055|consen 157 WAKKASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGT 236 (514)
T ss_pred ccccccccccccccccccHHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCc
Confidence 5554444444445555555566667777776 77799999999999999998877655 677888998888888886544
Q ss_pred CCCCCccccccccccccccCCCCCCccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCC-ce
Q 011179 93 YSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSL-RW 170 (491)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~ 170 (491)
+ ++-..+. -.....+.+.--..+|.+++|.|+|. .+++++....++.||+.+.+ +.++....++ +.
T Consensus 237 l----rifqvDG-------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~k~~~~~g~e~~ 304 (514)
T KOG2055|consen 237 L----RIFQVDG-------KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VTKLKPPYGVEEK 304 (514)
T ss_pred E----EEEEecC-------ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-cccccCCCCcccc
Confidence 3 3322222 23334556666789999999999998 89999999999999999874 3333333333 34
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.+.....+|++++|+..+..|.|.+....+++.+..+++.. .|..++|+.|++.|++.+.+|.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-----------------~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-----------------VVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-----------------EEeeEEEecCCcEEEEEcCCce
Confidence 57788999999999999999999999999998877766543 7899999999999999999999
Q ss_pred EEEEECCCCeeeEEEeccCC-CeeEEEEecCCCCEEEEEeCCCeEEEEecccc--cCCCceeeEeccccCcEEEEEEcCC
Q 011179 251 IYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
|++||+++..++.++....+ .-++++.+ .++.+||+|+..|.|.|||..+. ....+++..+..-...|+++.|+++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999999999888864322 23566776 78899999999999999996522 2356778888888899999999999
Q ss_pred CCEEEEeeC--CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 328 GRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 328 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
+++||.++. +..+++..+.+ ..+|.......+.+....+++
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS-------------------------------------~TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPS-------------------------------------CTVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred hhhhhhhhhccccceEEEeccc-------------------------------------eeeeccCCCCCCcccceEEEE
Confidence 999987765 56788887754 233333333334445556678
Q ss_pred ccCCCcEEEEEecCCeEEEEECC
Q 011179 406 YSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 406 ~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
|||.+.++|.|..+|.+.+|.+.
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999864
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-28 Score=200.09 Aligned_cols=271 Identities=18% Similarity=0.264 Sum_probs=209.9
Q ss_pred EEEEEEcCCeEEEEECCCC---------eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccc
Q 011179 138 LFVAGFQASQIRIYDVERG---------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 208 (491)
.+++|+....|.=+++... ..+........|.++|++++. ++.++|+|+.|-+|+|||+.........
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l- 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL- 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce-
Confidence 3667777776666665432 123345566788999999998 4899999999999999999876543322
Q ss_pred cccccccccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
..|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+ |.+++.+
T Consensus 80 ---------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLAL 143 (362)
T KOG0294|consen 80 ---------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLAL 143 (362)
T ss_pred ---------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEE
Confidence 13677999999998765 89999999999999999999999999999999999997 8899999
Q ss_pred EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
+.+.|+.+++||+- .++....+. -...-+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 144 sVg~D~~lr~WNLV----~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~------------- 204 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLV----RGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE------------- 204 (362)
T ss_pred EEcCCceeeeehhh----cCccceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh-------------
Confidence 99999999999996 444333332 122334589999999999888774 88998876321111
Q ss_pred eecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeee
Q 011179 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 446 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 446 (491)
+... ..+....| . ++..|++|..|+.|.+||..+..+...+.+|...|.++
T Consensus 205 ---------------------i~~~---~r~l~~~~-l----~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 205 ---------------------IENP---KRILCATF-L----DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred ---------------------hhcc---ccceeeee-c----CCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 0000 11111111 1 68899999999999999999999999999999999999
Q ss_pred Ee--cCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 447 SW--HPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 447 ~~--sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+ .|++.+|+|++.||.|+|||++.....
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEccccccC
Confidence 84 467789999999999999999887443
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-29 Score=227.65 Aligned_cols=291 Identities=20% Similarity=0.316 Sum_probs=230.6
Q ss_pred CCCceE---EEEEcC-CCCEEEEEEcCCeEEEEECCCCeEE--EE-EeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 123 TTSRAY---VSQFSA-DGSLFVAGFQASQIRIYDVERGWKI--QK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 123 h~~~i~---~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~--~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
|...|. .+..++ .+++|.+||.||.|++|++...... .. ......|...|++++...+++.|++++.|.+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 344444 455554 5677999999999999998754221 11 2344577778999999999999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCe--eeE--------E
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANK--LSL--------R 264 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~--~~~--------~ 264 (491)
|+...+..... ...+.|+.-|.|+++ -++...+|+|+-|+.|.+||++++. .+. .
T Consensus 100 W~~~~~~~~c~--------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCM--------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred eecccCcchhH--------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 99876642111 122358889999999 7788899999999999999999772 222 2
Q ss_pred Ee-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 265 IL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
+. ++...|.+++-+ +.+..|++|+..+.+++||.+ ..+.+..+.+|...|..+..++||..+++++.||+|++|
T Consensus 166 l~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred CCCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 22 788899999997 778899999999999999999 888888999999999999999999999999999999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 423 (491)
|+.. .+++.++..|... .|+...+|+-..+++|+.||.|+
T Consensus 241 dLgq----------------------------------QrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 241 DLGQ----------------------------------QRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eccc----------------------------------cceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEE
Confidence 9987 4677788877743 34445566778999999999999
Q ss_pred EEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 424 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.=|+.+......+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999885433333335668888888866666677888999999987653
No 89
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.7e-27 Score=226.08 Aligned_cols=230 Identities=13% Similarity=0.185 Sum_probs=173.1
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK----- 260 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~----- 260 (491)
|+.++.|++|+........ ...+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~v~----------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI----------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred CCceeEEEeeecCCCceEE----------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 4456778888865432211 12368889999999996 7899999999999999997642
Q ss_pred ---eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 261 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 261 ---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
++..+.+|...|.+++|+|....+|++++.|++|++||++ .+..+..+. |...|.+++|+|+|.+|++++.|
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence 3346778999999999984444466899999999999998 555555554 56789999999999999999999
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
+.|+|||+++ +..+..+.+|...... ...+...|++++.+|++++
T Consensus 189 ~~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 189 KHMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred CEEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEE
Confidence 9999999998 3556677777643322 2223334567889999988
Q ss_pred cCC----eEEEEECCC-CcEEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 418 HDS----CVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 418 ~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.|+ .|+|||+++ ++++..+. .+.+.+......+++.++++|+.|+.|++|++..+
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 764 799999985 55665543 33344444444566889999999999999999765
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-28 Score=216.00 Aligned_cols=270 Identities=19% Similarity=0.312 Sum_probs=210.1
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEE-------eecCCCceeEEEEEECCCC-CeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKD-------ILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~ 191 (491)
..|.+.|+.+.+-|... .+|+++..+.|.|||..+....... ....+|...-+.++|++.. -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46899999999999764 5677888999999998764222221 1345666567789999865 5789999999
Q ss_pred eEEEEECCCCccc-cccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEEec
Q 011179 192 IVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRILA 267 (491)
Q Consensus 192 ~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~ 267 (491)
.|.+||+...... ...... ....+|...|..++|++ +...+++++.|+.+.|||++ +.+......+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~----------~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPK----------TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred cEEEEeccccccCCccccce----------EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 9999999765432 111111 11236888999999999 55678899999999999999 5666677789
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCC
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 346 (491)
|.++|+|++|+|.++.+||+|+.|++|++||+|.. ..++..+.+|...|..+.|+|+ ...|++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 99999999999999999999999999999999944 3588899999999999999996 4678899999999999997
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 426 (491)
....... +. -..||
T Consensus 348 ~ig~eq~--------------------------------------------------~e----------da~dg------ 361 (422)
T KOG0264|consen 348 RIGEEQS--------------------------------------------------PE----------DAEDG------ 361 (422)
T ss_pred ccccccC--------------------------------------------------hh----------hhccC------
Confidence 6221100 00 00111
Q ss_pred CCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCC
Q 011179 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~ 471 (491)
..+++..-.||...|.+++|+|..+ .|+|.+.|+.+.||++..
T Consensus 362 --ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 --PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred --CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2344555668999999999999988 788899999999999874
No 91
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-28 Score=218.12 Aligned_cols=285 Identities=18% Similarity=0.243 Sum_probs=230.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe---EEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
-.|..-|.++.+|...+.+.||+. |.|+|||+.... .+..+... .....|.++...|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeee
Confidence 368888999999999999999975 579999996531 12222111 1234699999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
+..........+.... -.+++++.+||.+..++++.||.|.|||+.+...++.+.+|.+.+.||..
T Consensus 494 LAapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ccCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 9876543322222110 15778999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+ ++|..|.+|+-|++||.||++ .+..+... ...+.|.++...|++.++++|-.++.+.+.......
T Consensus 560 s-~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------- 625 (705)
T KOG0639|consen 560 S-KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------- 625 (705)
T ss_pred c-CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc--------
Confidence 7 899999999999999999998 55544432 245789999999999999999999988887766522
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 437 (491)
...+.-|. .|+.++.|++.|+++++.+.|+.+..|.+.-|..+...+
T Consensus 626 ---------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 626 ---------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ---------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 11122222 455566777789999999999999999999999888876
Q ss_pred cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
..++|.++.+|.|.++|+||+.|....+|.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5678999999999999999999998888875
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.1e-27 Score=195.48 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=216.0
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...|..+.|+|.++.|++++.||.+++|++...... ..-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 678999999999999999999999999999876222 2234556899999987 55689999999999999998876
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
..+. .|..+|.|+.+++-...+++|+.|++|++||.+.......+. ....|.++..+ ++
T Consensus 88 ~~ig-----------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIG-----------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GN 146 (323)
T ss_pred eeec-----------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CC
Confidence 4443 366699999999977789999999999999998755555543 34478888764 78
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.|+.|+.|..+.+||++...... ...-..-.-.+.++++-|++.-+++++-||.|.+=.+.......
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~----------- 213 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ----------- 213 (323)
T ss_pred EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh-----------
Confidence 89999999999999998443221 11112234568899999998889999999999887776532111
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCcee---EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
..-..|+.|... ..+.-.+.+++|+|--..+|+|+.||.|.+||+.+.+.+..+....
T Consensus 214 -------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 214 -------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred -------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 122234444321 2233344555677778889999999999999999999999998777
Q ss_pred CCeeeeEecCCCCeEEEEeC
Q 011179 441 SPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~ 460 (491)
..|.+++|+.||..||.++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 88999999999999999874
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=211.04 Aligned_cols=292 Identities=12% Similarity=0.168 Sum_probs=229.8
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC--eEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCeEEEEECC
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVG 199 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~ 199 (491)
..+.|+++.|+|...+|++|+.||+++||.++.. ..++.+. -...+|.+.+|.|+|. .+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~---l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH---LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee---eccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 4578999999999999999999999999998743 2333332 3334899999999998 88899999999999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+.+...+..+..... ..+..+..++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+
T Consensus 289 ~ak~~k~~~~~g~e~-------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs- 353 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEE-------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS- 353 (514)
T ss_pred ccccccccCCCCccc-------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-
Confidence 888766554433221 156778889999999999999999999999999988874 46789999998
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC-cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCC
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
.+++.|++++.+|.|.+||++ ...++..+..... .-++++.++++.+||+|+..|.|.|||..+-.....
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~----- 424 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN----- 424 (514)
T ss_pred cCCcEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC-----
Confidence 788899999999999999998 6677777764322 246788889999999999999999999765211110
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec--CCeEEEEECCCCcEEEee
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 436 (491)
.+++.++.. +.....++.|++|..+||.++. +..+++-.+.+......+
T Consensus 425 -----------------------PkPik~~dN------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 425 -----------------------PKPIKTVDN------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred -----------------------CCchhhhhh------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC
Confidence 122322222 2233345578889999998876 678999998887776666
Q ss_pred cc---CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 437 KY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 437 ~~---h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
.. .-+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 43 34579999999999999999999999999874
No 94
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=209.32 Aligned_cols=308 Identities=18% Similarity=0.241 Sum_probs=233.8
Q ss_pred CccccCCCCceEEEEEcCCC--CEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCe
Q 011179 117 PWPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPI 192 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg--~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~ 192 (491)
.....-+..+|++++|+|.. +++|+|...|.|-+||+.+ ............|..+|.++.|+|.. ..+++.++||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34556789999999999975 4788999999999999952 22344455667888899999999965 68889999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~ 271 (491)
|++-|++++....+...... ...+.++.|+.+...++++..-|...+||++++.. ...+.-|...
T Consensus 259 iR~~D~~~~i~e~v~s~~~d--------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTD--------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhHHHhhcCcc--------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 99999998876655554311 12677889999888899998888999999988765 5566678899
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
|++++++|-...+|++++.|++.+|||+|.......++.....|...|.+..|||.+-.|++.+.|..|+|||..-....
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 99999999899999999999999999999765554455666789999999999999888999999999999998421100
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
..+..++. |.......-..|...|.|+..++++|..-..|-|+|-..++
T Consensus 405 ------------------------------~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 405 ------------------------------DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ------------------------------CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 11111221 11111111122444677799999999999999999998888
Q ss_pred EEEeeccCC-CCeeee-EecCCCCeEEE-EeCCCcEEEEcC
Q 011179 432 QVAALKYHT-SPVRDC-SWHPSQPMLVS-SSWDGDVVRWEF 469 (491)
Q Consensus 432 ~~~~~~~h~-~~v~~~-~~sp~~~~l~s-~~~Dg~v~iw~~ 469 (491)
.+..+.... ..|.++ .|+|-+..+++ ++..|.|+||--
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 787764333 245554 79999884554 456788888864
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3e-27 Score=225.06 Aligned_cols=259 Identities=24% Similarity=0.287 Sum_probs=213.7
Q ss_pred ccccCCCCCCcc-ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEE
Q 011179 108 LSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 108 ~~~~~~~~~~~~-~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (491)
.++..+...... +.+|.+.|.+++|..-+.+|++|+.|.+++|||..+|.....+ .+|...|.++... ..++++
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEcc--CceEee
Confidence 444444444445 8999999999999987889999999999999999999777654 4788889888874 556788
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
|+.|.+|++|++.++....+.. +|.++|.++..+ +.++++|+.|+.|.+||+.+++++..+.
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred ccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 8999999999999888766543 477799999998 7799999999999999999999999999
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
+|...|.++.+. .. +.+++|+.|++|++||++ .. +++..+.+|.+-+..+.+ .+++|++++.|++|++||.
T Consensus 369 gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 369 GHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred CCcceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeec
Confidence 999999999885 33 899999999999999998 66 899999999999877766 4679999999999999999
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC-ceeEeeEEEEecccccCCCcEEEEEecCCeEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 424 (491)
.+ ++.+.++.+. ....... .+ ....+++++.||.+++
T Consensus 441 ~~----------------------------------~~~~~~~~~~~~~~v~~l------~~--~~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 441 EE----------------------------------GECLRTLEGRHVGGVSAL------AL--GKEEILCSSDDGSVKL 478 (537)
T ss_pred cc----------------------------------CceeeeeccCCcccEEEe------ec--CcceEEEEecCCeeEE
Confidence 88 4566666663 2222211 11 1367899999999999
Q ss_pred EECCCCcEEEeeccC
Q 011179 425 YDLVSGEQVAALKYH 439 (491)
Q Consensus 425 wd~~~~~~~~~~~~h 439 (491)
||+++++++..+-.+
T Consensus 479 ~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 479 WDLRSGTLIRTLLST 493 (537)
T ss_pred EecccCchhhhhhhc
Confidence 999999988776433
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-28 Score=197.08 Aligned_cols=256 Identities=17% Similarity=0.145 Sum_probs=204.5
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEEE
Q 011179 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~ 197 (491)
-.+|++.|..+...--|++|||++.|++|+|+.+..+.....+..+.+|.++|..++|.. .|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 367999999999999999999999999999999988766666778899999999999976 789999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-e--eeEEEeccCCCe
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-K--LSLRILAHTSDV 272 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~-~--~~~~~~~h~~~v 272 (491)
-.+++..+.... ..|...|++++|-|. |-.|++++.||.|.|.+.+.. . .......|.-.|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 988865444332 247779999999884 568999999999999988765 2 223445899999
Q ss_pred eEEEEecCC--C-----------CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC----CEEEEee
Q 011179 273 NTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISNG 335 (491)
Q Consensus 273 ~~~~~~~~~--~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~ 335 (491)
++++|.|.. + +.|++|+.|..|+||+.... .......+.+|.+.|+.++|.|.- ..|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999998642 2 56999999999999998632 334555689999999999999963 5799999
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.||++.||..+........ ..+ .......+...||..|++|++
T Consensus 231 qDg~viIwt~~~e~e~wk~----------------------------tll---------~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKK----------------------------TLL---------EEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CCCcEEEEEecCccCcccc----------------------------ccc---------ccCCcceEEEEEeccccEEEE
Confidence 9999999998742221110 111 112234566677889999999
Q ss_pred EecCCeEEEEECC
Q 011179 416 GSHDSCVYVYDLV 428 (491)
Q Consensus 416 ~~~dg~i~iwd~~ 428 (491)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999753
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-27 Score=216.97 Aligned_cols=262 Identities=19% Similarity=0.225 Sum_probs=213.8
Q ss_pred cccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE
Q 011179 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (491)
+..++.............+...|+++.|+++|++||+|..+|.|.|||..+.+.+.... ..|...|-+++|. +..+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~--~~~l 273 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWN--SSVL 273 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEecc--CceE
Confidence 34444444444333444458999999999999999999999999999998875555432 2278899999998 7778
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
.+|+.++.|..+|+...+.... . ..+|...|..++|++|++++|+|+.|+.+.|||....++...
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred EEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 9999999999999987654332 1 236888999999999999999999999999999988889999
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEe--CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe--eCCCcE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAI 340 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~dg~i 340 (491)
+..|.+.|..++|+|....+||+|+ .|+.|++||.. .+..+..+. -...|..|.|++..+.|+++ ..++.|
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 9999999999999999999999975 59999999997 666666554 45889999999998877764 456789
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 420 (491)
.||+..++ ..+..+.+|... + ..+++||||..+++|+.|.
T Consensus 414 ~lw~~ps~----------------------------------~~~~~l~gH~~R--V----l~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 414 TLWKYPSM----------------------------------KLVAELLGHTSR--V----LYLALSPDGETIVTGAADE 453 (484)
T ss_pred EEEecccc----------------------------------ceeeeecCCcce--e----EEEEECCCCCEEEEecccC
Confidence 99999873 566777888743 2 3346788999999999999
Q ss_pred eEEEEECCCC
Q 011179 421 CVYVYDLVSG 430 (491)
Q Consensus 421 ~i~iwd~~~~ 430 (491)
++++|++-..
T Consensus 454 Tlrfw~~f~~ 463 (484)
T KOG0305|consen 454 TLRFWNLFDE 463 (484)
T ss_pred cEEeccccCC
Confidence 9999998764
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=192.71 Aligned_cols=252 Identities=17% Similarity=0.152 Sum_probs=205.3
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELV 243 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~ 243 (491)
..+|...|.+++|+.+|..|++++.|+++.+|+++........ ...+|.+.|-.++|+| ....++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~--------------~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL--------------VYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh--------------cccCCCcchhhheeCCCCCcceE
Confidence 3466778999999999999999999999999999876432211 2346888899999998 456899
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+++.|.+|++||+..+++.......... .-+.|+ |++++++.++.|..|.+.|.+ +.+...... ..-.+.-+.
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ws-p~g~~~~~~~kdD~it~id~r----~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIETKGEN-INITWS-PDGEYIAVGNKDDRITFIDAR----TYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeeccCcc-eEEEEc-CCCCEEEEecCcccEEEEEec----ccceeehhc-ccceeeeee
Confidence 9999999999999999998888654444 556787 788999999999999999998 444444332 334567788
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
|+.++.+++.....|.|.|..... -+++..++.|. .-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsyps----------------------------------Lkpv~si~AH~------snCic 194 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPS----------------------------------LKPVQSIKAHP------SNCIC 194 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccc----------------------------------cccccccccCC------cceEE
Confidence 888888888877889999988765 25677778887 22345
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
..|+|+|+++|+|+.|-.+-+||+...-++..+..+.-+|+.++||.||++||+|+.|-.|-|=+++++++..+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence 57888999999999999999999998888889988999999999999999999999999998777777765443
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.9e-27 Score=227.97 Aligned_cols=265 Identities=18% Similarity=0.207 Sum_probs=208.0
Q ss_pred CCCceeEEEEEECCCCCeEEEEE--CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
.++...|.++..+||+..+++|+ .|+.++||+.+.--.... .....+.-.......|.+.|.|+.|+|||++||
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~----~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE----EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhh----hhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 34456799999999999999999 899999999753210000 000001111222346888999999999999999
Q ss_pred EEeCCCeEEEEECCC------------------CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 244 AGSSDDCIYVYDLEA------------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
+|+.|+.|.||.... .+.+..+.+|...|..++|+ |++.+|++++.|++|.+|+.+ +
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----t 160 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----T 160 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----c
Confidence 999999999998872 13567788999999999998 789999999999999999998 6
Q ss_pred CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
...+..+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+. +..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----------------------------------~i~ 206 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----------------------------------GIE 206 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc----------------------------------eee
Confidence 6889999999999999999999999999999999999997662 233
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEEec----CCeEEEEECCCCcEEEeeccCCCCeeeeEecCC----------
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS---------- 451 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~---------- 451 (491)
+.+.++-...........+.|||||.+|++... -.++.|.+-.+.+.-..|-+|.+++.++.|+|.
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 333333322233344456689999999998754 347889988888888888999999999999982
Q ss_pred ---CC----eEEEEeCCCcEEEEcCCCCC
Q 011179 452 ---QP----MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 452 ---~~----~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.. .+|+|+.|++|.||......
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 11 68899999999999985443
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.7e-27 Score=214.60 Aligned_cols=204 Identities=17% Similarity=0.211 Sum_probs=156.1
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC---CCCEEEEeeCCCcEEEEeCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~ 346 (491)
..+.+++.+ |++++|++|..-|+++||++. .......+..|...|.|+.++. ..++||+++.|..|++||+.
T Consensus 460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQ----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cceEEEEEC-CCcceecccCccCceEEEEeh----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 468999998 899999999999999999997 6667777889999999999975 35789999999999999998
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE-----------EEeCC-ceeEeeEEEEecccccCCCcEEE
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-----------TYKGH-SVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
..........++....-.+++....-+.+.+....++.+. .+..| .... ....+.++..|..++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~--ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS--KTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc--cceEEEeeeCCCcceEE
Confidence 7655554444444444555555444444444444333221 11111 1111 12235567788999999
Q ss_pred EEecCCeEEEEECCCCcEEEeec---cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 480 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~ 480 (491)
+++.|..|+|||+.+|+..+.|+ +|.+....+...|.|-|||+.+.|.++.++|+..++......-
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 99999999999999999999997 4678899999999999999999999999999999987765443
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-26 Score=192.52 Aligned_cols=248 Identities=19% Similarity=0.276 Sum_probs=185.4
Q ss_pred CCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCC-ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 166 KSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
......|.+++|||. ..+++.++.|++||+|+++.. .... +. ...|.++|.+++|+.||..++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka-------------~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KA-------------QQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hh-------------hhccCCCeEEEEEccCCceEE
Confidence 344558999999994 456668899999999999863 3322 11 123666999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCC--CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+|+.|+.+++||+.+++. ..+..|.++|.++.|. +.. ..|++||.|.+|+.||.| ...++..+. -.+.+.+
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYA 161 (347)
T ss_pred eeccCCceEEEEccCCCe-eeeeecccceeEEEEe-cCCCcceeEecccccceeecccC----CCCeeeeee-ccceeee
Confidence 999999999999999954 6677999999999997 333 489999999999999999 667777665 3466777
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+..- ..+++++..+..|.+|++++........ .+.+....++.
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~-----------------------------------~SpLk~Q~R~v 204 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPTEFKRI-----------------------------------ESPLKWQTRCV 204 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcchhhhh-----------------------------------cCcccceeeEE
Confidence 7654 3478889999999999998743221110 00111112221
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCC--cEEEeeccCC---------CCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~---------~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.-.|....+.|+-+|.+.|..+..+ +.-..|+.|. ..|++++|+|....|+|+|.||++.+||-.
T Consensus 205 ---a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 205 ---ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ---EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 12225555699999999999999886 4444556564 258889999999999999999999999976
Q ss_pred CCCCC
Q 011179 471 GNGEA 475 (491)
Q Consensus 471 ~~~~~ 475 (491)
...+.
T Consensus 282 ar~kL 286 (347)
T KOG0647|consen 282 ARTKL 286 (347)
T ss_pred hhhhh
Confidence 65443
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=209.40 Aligned_cols=242 Identities=21% Similarity=0.333 Sum_probs=192.1
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
..|.+++|+|...+=++....-.+.||+..+......+.- .+..+.++.|..||+.|++|...|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr----------------Fk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR----------------FKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh----------------hccceeEEEeecCCeEEEccCCcC
Confidence 3799999999765433333456899999877655442221 122799999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-
Q 011179 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG- 328 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 328 (491)
.|+|||+.+...++.+.+|+.++..+.|+|.++..+++|++|+.+++||+. +......+.+|.+.|.+.+|+|..
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS----TAYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC----CcEEEEEecCCcceeEeeccccCCC
Confidence 999999888778888999999999999998889999999999999999997 445555889999999999999964
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC
Q 011179 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
.++++|+.||.|++||++... ..+..++.......+ .+-|
T Consensus 167 hivvtGsYDg~vrl~DtR~~~---------------------------------~~v~elnhg~pVe~v-------l~lp 206 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLT---------------------------------SRVVELNHGCPVESV-------LALP 206 (487)
T ss_pred eEEEecCCCceEEEEEeccCC---------------------------------ceeEEecCCCceeeE-------EEcC
Confidence 478999999999999999842 334444433322222 2334
Q ss_pred CCcEEEEEecCCeEEEEECCCCc-EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.|..|++++. ..|+|||+.+|. .+.....|...|+|+++..++..|+|++-||.|++||+.+-
T Consensus 207 sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 207 SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 6788888774 569999998654 45555559999999999999999999999999999996553
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=219.92 Aligned_cols=297 Identities=19% Similarity=0.276 Sum_probs=226.0
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEECC-CCCeEEEEECCCeEEEEEC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~ 198 (491)
+..+.++...++-..++.++.. .+.||.+............ ......+..+.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 5667788888998888888754 6888887654222111111 11122566788875 4589999999999999999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
............ ..|...+.++.|++ ...+|++|+.||.|++||++..+....+.+....|..+.|
T Consensus 118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 763222221111 13667999999998 4568999999999999999999988888899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+|..++.|+++.+.|.+++||+| ...++...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+...
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------
Confidence 99899999999999999999998 35577888999999999999999999999999999999999986432
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec--CCeEEEEECCCCc-EEE
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGE-QVA 434 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~-~~~ 434 (491)
....++.. ...+.++.|.|+. ...||+++. |-.|+|||++..- +..
T Consensus 255 -------------------------~~~~tInT---iapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 255 -------------------------KPKHTINT---IAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred -------------------------cceeEEee---cceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccce
Confidence 22222221 2344456677763 356777655 7789999997653 456
Q ss_pred eeccCCCCeeeeEecC-CCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 435 ALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp-~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
++..|...++.++|-. |-..|.+++.||+|..-.+.+...+
T Consensus 304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred eeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 7788999999999976 3448999999999987776665433
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=201.58 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=208.3
Q ss_pred cccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE
Q 011179 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 184 (491)
..++.+....+-...+.||.-.|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEE
Confidence 34445555555567889999999999999999999999999999999987653 333456788899999999999999
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
++++.|++..+.|+.++.......... ..-.+++.+|+|||..|.+|..||.|+|||+..+..+..
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~ 384 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK 384 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence 999999999999999988755443220 112689999999999999999999999999999999999
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc-cCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
|.+|.++|..++|+ .+|.+|++++.|+.|++||+| +.+....+... ..++.++.|.+.|.+|+.++.|=.|+++
T Consensus 385 Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 385 FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999998 899999999999999999999 44444444322 2369999999999999999887666666
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 423 (491)
+-.+.+ ...+..+..|....+. ..|....+++++++.|..++
T Consensus 460 ~k~~k~--------------------------------W~~~~~~~~~sg~st~------v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 460 KKKTKS--------------------------------WTEIKELADHSGLSTG------VRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred eccccc--------------------------------ceeeehhhhcccccce------eeecccceEEeeccchhheE
Confidence 643321 2333444444422222 23445678999999999888
Q ss_pred EEEC
Q 011179 424 VYDL 427 (491)
Q Consensus 424 iwd~ 427 (491)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.9e-26 Score=189.15 Aligned_cols=265 Identities=16% Similarity=0.183 Sum_probs=201.8
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC--eEEEEECCCe
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPI 192 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~ 192 (491)
.+.+.+..|.++|+|++.+ |.++|+|+.|-+|+|||+.+...+..+ -.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce---eccccceEEEEecCCcchhheeeecCCCc
Confidence 3467889999999999995 899999999999999999987555544 35677999999999775 8999999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
|.+|+...-...... .+|...|+.++.+|.++.-++.+.|+.+++||+-+++.-..+.- ....
T Consensus 109 i~iw~~~~W~~~~sl----------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~a 171 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSL----------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKA 171 (362)
T ss_pred EEEEEcCCeEEeeee----------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcc
Confidence 999999876554332 25778999999999999999999999999999998876554432 2233
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
+.+.|+ +.|.+++.+..+ .|-+|.+. .......+.. ...+.++.|. ++..|++|+.|+.|.+||...
T Consensus 172 t~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds----- 238 (362)
T KOG0294|consen 172 TLVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS----- 238 (362)
T ss_pred eeeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC-----
Confidence 559998 778877777664 68899886 3333333322 2446677776 567899999999999999986
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC--
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-- 430 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-- 430 (491)
..+...+.+|.....-+..... |++.+|++++.||.|++||+...
T Consensus 239 -----------------------------~~~~~~~~AH~~RVK~i~~~~~----~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 239 -----------------------------DTPLTEFLAHENRVKDIASYTN----PEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred -----------------------------CccceeeecchhheeeeEEEec----CCceEEEEeccCceEEEEEcccccc
Confidence 3566677788765554443333 36899999999999999999765
Q ss_pred ---cEEEeeccCCCCeeeeEe
Q 011179 431 ---EQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 431 ---~~~~~~~~h~~~v~~~~~ 448 (491)
+++..+.. ...++|+..
T Consensus 286 ~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 286 KRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CCcceeEEeec-CCccceeee
Confidence 34555442 445566554
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.7e-26 Score=207.01 Aligned_cols=308 Identities=19% Similarity=0.242 Sum_probs=229.4
Q ss_pred ccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC--eEEEE
Q 011179 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~ 187 (491)
+-.|+.....+.+|++.|.|+...|.|.+||+|+.||+|+||.+.+|.++....... .|.+++|+|.+. .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEE
Confidence 445677778889999999999999999999999999999999999998888765443 699999999874 34444
Q ss_pred ECCCeEEEEECCCCccccccccccc-------cc--c--ccccc----------cCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEI-------HD--G--LDFSA----------ADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~-------~~--~--~~~~~----------~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
- ...+.|.+..-|..+........ .. . ..+.. .....|...|..+.|+..|.||++..
T Consensus 462 ~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 V-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred e-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 3 44466666544422111100000 00 0 00000 01124667899999999999999976
Q ss_pred CC---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 247 SD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 247 ~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
.+ ..|.|+++.......-|....+.|.++.|+ |...+|++++. ..|+|||+. ....+..+......|.+++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMS 614 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeee
Confidence 54 569999998877666666677889999997 55666666654 689999997 6666777777778899999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
.+|.|..|+.++.|+.+..+|+.-.. .+.+++..|... ..+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlss---------------------------------kPyk~lr~H~~a------vr~ 655 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSS---------------------------------KPYKTLRLHEKA------VRS 655 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCc---------------------------------chhHHhhhhhhh------hhh
Confidence 99999999999999999999997633 344445555522 233
Q ss_pred ccccCCCcEEEEEecCCeEEEEECC------CC---cEEEeeccCCCC----eeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLV------SG---EQVAALKYHTSP----VRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~h~~~----v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
.+|.+.-.++++|+.||.+.||.-. .. -++..+++|... |.++.|+|...+|++++.||+|++|
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 3566667899999999999998522 11 246777888765 9999999999999999999999998
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=177.13 Aligned_cols=260 Identities=19% Similarity=0.286 Sum_probs=196.4
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccc----cccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL----DFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
..|.+++|+|.|.+.++|+...+++|-....- ..+...++.. .........|++.|+|.+|+|+|..|++|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l-----~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL-----IDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccc-----cCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 47999999999999999999999988653211 1111111110 11122345789999999999999999999
Q ss_pred eCCCeEEEEECCCCee-----eEEEeccCCCeeEEEEecC---CCCEEEEEe-CCCeEEEEecccccCCCceeeEecccc
Q 011179 246 SSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCFGDE---SGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+.|.+|++..++...+ -..+.-|.+.|..++|... .+.+|++++ .|..|++-|.. .++....+.+|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~----~g~~~~a~sght 183 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG----RGQGFHALSGHT 183 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC----CCCcceeecCCc
Confidence 9999999987754332 2456679999999999721 245666654 35666666765 788899999999
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
+.|.++- +-++-++++|+.|.+|++||++-.. .+.++........
T Consensus 184 ghilaly-swn~~m~~sgsqdktirfwdlrv~~----------------------------------~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 184 GHILALY-SWNGAMFASGSQDKTIRFWDLRVNS----------------------------------CVNTLDNDFHDGG 228 (350)
T ss_pred ccEEEEE-EecCcEEEccCCCceEEEEeeeccc----------------------------------eeeeccCcccCCC
Confidence 9998873 4467899999999999999998743 3333321110000
Q ss_pred -eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 397 -LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 397 -~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
-.....+.+..|.|++|++|-.|....+||++.++.+..+..|...|+++.|+|...++++++.|..|++=|+...-
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 01222334667799999999999999999999999999999999999999999999999999999999999998753
No 108
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=209.60 Aligned_cols=297 Identities=22% Similarity=0.259 Sum_probs=216.9
Q ss_pred EEEEEcCC---CCEEEEEEcCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 128 YVSQFSAD---GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 128 ~~~~~s~d---g~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
++..|++. ...||.+..||.|.++|......- .++.....|...|.++.|.|....|++++.|.++++||++.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44566653 347999999999999998753111 123445678889999999997788999999999999999988
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe--------------------
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-------------------- 260 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------------------- 260 (491)
++..... ..||.+.|.+++|.|.. ..|++|+.||.|.|||+....
T Consensus 133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 7654421 23788899999999955 578899999999999986432
Q ss_pred -------eeEEEeccCCC----eeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCC--cee--eEeccc---cCcEEE
Q 011179 261 -------LSLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKG--KPA--GVLMGH---LEGITF 321 (491)
Q Consensus 261 -------~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~--~~~--~~~~~~---~~~i~~ 321 (491)
.+.....+... |+.+.| .|...||+++. |+.|+|||++...... .+. ..+.-| .-.+++
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01111223333 445555 57788888887 9999999998432111 111 122223 345778
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+.....|.+|.+.+.|+.|++|++..... .++..+.++.........
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks- 323 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS- 323 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee-
Confidence 88888899999999999999999988542 334444554433322222
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcE-EEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
..+||+.++++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|..- -++|+++|..++||++.++.+..
T Consensus 324 ---~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 324 ---ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ---ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 4667999999999999999999988654 566779999999999998554 57888999999999997766544
No 109
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=191.28 Aligned_cols=292 Identities=21% Similarity=0.304 Sum_probs=210.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccc
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~ 206 (491)
..|+.|++.|.+||+|+.||.|.|||+.+.. +.+ ....|-.+|.+++||+||+.|++++.|..|.+||+..|.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999863 333 3356667999999999999999999999999999999987665
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe-ccCC----CeeEEEEecC
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL-AHTS----DVNTVCFGDE 280 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~----~v~~~~~~~~ 280 (491)
..+.. +|+.+.|+|..+ ..++.-.+..-.+-++..++.. .+. ...+ ...+..| ++
T Consensus 103 irf~s-----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~f-dr 163 (405)
T KOG1273|consen 103 IRFDS-----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVF-DR 163 (405)
T ss_pred EEccC-----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccc-cC
Confidence 55433 899999999443 3333333444555555543221 111 1111 1122345 58
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEecccc-CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.|+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++..........
T Consensus 164 ~g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e--- 236 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE--- 236 (405)
T ss_pred CCCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC---
Confidence 89999999999999999998 556666665544 7789999999999999999999999999875221100000
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCcEEEeecc
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 438 (491)
-.+...+..--....-..+ +||.+|.|+++|+. ...++||....|.+++.+.+
T Consensus 237 ----------------------~e~~~K~qDvVNk~~Wk~c----cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 237 ----------------------VEPEHKLQDVVNKLQWKKC----CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred ----------------------cChhHHHHHHHhhhhhhhe----eecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 0000000000000011122 46669999998875 46799999999999999988
Q ss_pred CC-CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 439 HT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 439 h~-~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.. ....++.|+|-...+++- ..|.|+||.....+.
T Consensus 291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred Cchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 77 668899999999989888 679999999766543
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-26 Score=201.52 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=204.9
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCCcccc-ccccccccccccccccC
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES-LANVTEIHDGLDFSAAD 222 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~ 222 (491)
..++.+||+.+|....+....... .-.++..- .+.+++++.. ...|.+|.+....... ...+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~------------- 80 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLA--QAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL------------- 80 (476)
T ss_pred CcceeEEecCCCceeEEecCcccc--cchhhhhh-chhheeeecccCccccccccCchhhhhhhccc-------------
Confidence 345999999999555443222111 11111111 2356666654 4589999987654433 1111
Q ss_pred CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccc
Q 011179 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 302 (491)
.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ .++.+|++|+.||.|.+|++...
T Consensus 81 ----Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 ----PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ----ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEee
Confidence 1279999999999999999899999999999999999999999999999998 89999999999999999987421
Q ss_pred -----cCCCceeeEeccccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 303 -----NVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 303 -----~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
....++...+..|.-+|+.+...+. ..+|++++.|.++++||+..+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--------------------------- 208 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--------------------------- 208 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---------------------------
Confidence 1255788899999999999998764 458999999999999999873
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC----------------cEEEeeccC
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----------------EQVAALKYH 439 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~h 439 (491)
..+.++.-.. .+.. .+.+|.++.+++|+.+|.|.+.++... ..+..+.+|
T Consensus 209 -------~LLlti~fp~---si~a----v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 209 -------VLLLTITFPS---SIKA----VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred -------eeeEEEecCC---ccee----EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 3333332222 2222 245667999999999999999887532 345566789
Q ss_pred CC--CeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCC
Q 011179 440 TS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 478 (491)
Q Consensus 440 ~~--~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~ 478 (491)
.+ +|+|++.+-||.+|++|+.||.|+|||+.+.......
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 88 9999999999999999999999999999876654433
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=212.14 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=218.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
.+|...-+.++|.|+|.+|.+++.||.|++|+........... ..+...|.+++. ++.+|++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti--~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI--DISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh--hccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 4688889999999999999999999999999987652212211 114446777665 456999999999999999988
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
++...+..- .+.++.+++|+-+|+++|.|+.|-.|++.++........+++|.++|.++.|+ |
T Consensus 86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p 148 (933)
T KOG1274|consen 86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P 148 (933)
T ss_pred CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence 876433321 22289999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEecc--------ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
++++||+.+.||.|++||+. .+.....+.+ ....+..++|+|+|..|+..+.|+.|++|+.....
T Consensus 149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we--- 221 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE--- 221 (933)
T ss_pred CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---
Confidence 89999999999999999997 4443333322 14557789999999899999999999999988743
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
....+........... ..|||+|+|||+++.||.|.|||.++.+.
T Consensus 222 -------------------------------~~f~Lr~~~~ss~~~~----~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 222 -------------------------------LQFKLRDKLSSSKFSD----LQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred -------------------------------eheeecccccccceEE----EEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 3333333332222222 35777999999999999999999988332
Q ss_pred EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
......|.+++|.|+...|-.....|...+|.
T Consensus 267 ----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 267 ----HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred ----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 22346899999999998666666666655553
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=190.87 Aligned_cols=283 Identities=23% Similarity=0.308 Sum_probs=214.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEE---------E-EEeecCCCceeEEEEEEC-------CCCCeEEEEEC
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI---------Q-KDILAKSLRWTVTDTSLS-------PDQRHLVYASM 189 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~---------~-~~~~~~~~~~~v~~~~~s-------p~~~~l~~~~~ 189 (491)
...+.|||||..|++-+.|..+.+|++.....- . ...........|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998542000 0 001111223367777775 67789999999
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEE--E-
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLR--I- 265 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~--~- 265 (491)
+.-|++||.-+|+...........+.+ ....+++|+|||.+|++|. ...|+++|+ +.|..... .
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~-----------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEY-----------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhh-----------hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 999999999999887665544322211 1467899999999988874 567999999 44432111 1
Q ss_pred ----eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCcE
Q 011179 266 ----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAI 340 (491)
Q Consensus 266 ----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i 340 (491)
.+..+-+.|++|+|.+...++.|+....+-||.-. ...++..+.+|.+.|+.+.|.++|+.|.+|+. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 13467789999998888899999999988888765 77889999999999999999999999999886 6789
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 420 (491)
..||+|... .++-.+..|.. .+-.++.| ...|++++|++|+.||
T Consensus 276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~F--Dld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILF--DLDPKGEILASGDTDG 319 (406)
T ss_pred EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEE--ecCCCCceeeccCCCc
Confidence 999999743 33333333332 12223334 3457899999999999
Q ss_pred eEEEEECCC-CcEEEeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 421 CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 421 ~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
.|++||++. |..+..+..|...++.++++|--+++++++..
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999998 77788888899999999999998899988764
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=211.60 Aligned_cols=220 Identities=16% Similarity=0.268 Sum_probs=191.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEE-CCCCCeEEEEECCCeEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~i~i 195 (491)
...++.|.+-|+.++...+|+.|++++.|-+|++|+...+. ..-......|...|.|+++ .++...+|+|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 56789999999999999999999999999999999998773 1222344678889999999 888999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCC-CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDG-GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
||+.++....+..... ....... |+..+|++++-++.|..+++|+..+.+++||.++++.+..+++|...|.+
T Consensus 145 WDin~~~~~l~~s~n~------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNN------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhccc------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 9999884422211111 1111122 78889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
+..+ ++|..+++++.||+|++||+. ...++.++..|.+.|+++..+|+-..+++|+.||.|..-|+++.
T Consensus 219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9997 899999999999999999998 88899999999999999999999999999999999999999984
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-26 Score=186.36 Aligned_cols=262 Identities=21% Similarity=0.270 Sum_probs=201.8
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~ 243 (491)
..|+..|.++...--|+.|++++.|++|+|+.+.++...... ....||.++|..++|-. -|.+||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-------------~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-------------AELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-------------eEecCCCCCeeEEeecccccCcEee
Confidence 456667888888888999999999999999999876541111 12357999999999976 899999
Q ss_pred EEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 244 AGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
+++.||.|.||.-++++.. .....|...|++++|.|.+ +-.|++++.||.|.|.+.+... ..........|.-.|+
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVN 153 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccccccc
Confidence 9999999999998887543 3455899999999998544 5678999999999999987441 2233445678999999
Q ss_pred EEEEcCC---C-----------CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE
Q 011179 321 FIDSRGD---G-----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 321 ~~~~~~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
+++|.|. | +.|++|+.|..|+||+.....- ..-.
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--------------------------------~~e~ 201 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--------------------------------KLER 201 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------------------------------hhhh
Confidence 9999986 4 5699999999999999987321 1223
Q ss_pred EEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC--c-EEEeeccCCCCeeeeEecCCCCeEEEEeCCCc
Q 011179 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--E-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~-~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~ 463 (491)
++.+|.. .+....++|...--..+||+++.||+|.||-.... . ....++.....+..++||+.|+.|+.++.|+.
T Consensus 202 ~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 202 TLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred hhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 3566663 33345566666555679999999999999986521 1 12233445678999999999999999999999
Q ss_pred EEEEcCCCCCCC
Q 011179 464 VVRWEFPGNGEA 475 (491)
Q Consensus 464 v~iw~~~~~~~~ 475 (491)
|.+|.-+..++-
T Consensus 280 vtlwke~~~Gkw 291 (299)
T KOG1332|consen 280 VTLWKENVDGKW 291 (299)
T ss_pred EEEEEeCCCCcE
Confidence 999987665543
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.3e-24 Score=198.18 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=194.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE-EEEECCCeEEEEECCCCccccccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
++.+++++.|+.|++||+.+++.+.... .+. .+..++|+|+++.+ ++++.++.|++||..+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 3578899999999999999886655442 222 36789999999876 5567789999999988765432211
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC-
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg- 292 (491)
+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++|+ ++++++++++.++
T Consensus 72 -----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 72 -----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence 0 034568999999977665 4689999999999887766643 3456889997 7888998888765
Q ss_pred eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCC
Q 011179 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
.+.+||.. ......... ......+++|+|++++|+++ ..++.|++||+.+...
T Consensus 138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--------------------- 191 (300)
T TIGR03866 138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--------------------- 191 (300)
T ss_pred eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------------------
Confidence 56778986 444433332 23345789999999988654 4689999999987432
Q ss_pred CCCccccCCCCceEEEEeCCcee-EeeEEEEecccccCCCcEEEEE-ecCCeEEEEECCCCcEEEeeccCCCCeeeeEec
Q 011179 372 PQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
+..+..+... ...........++|++++++++ ..++.+.+||+.+++.+..+. +...+.+++|+
T Consensus 192 -------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 192 -------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred -------------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 1211111000 0000001123567899986554 456789999999988876654 44579999999
Q ss_pred CCCCeEEEE-eCCCcEEEEcCCCCCC
Q 011179 450 PSQPMLVSS-SWDGDVVRWEFPGNGE 474 (491)
Q Consensus 450 p~~~~l~s~-~~Dg~v~iw~~~~~~~ 474 (491)
|++++|+++ +.+|.|++||+...+.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999998876 5689999999988654
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=202.17 Aligned_cols=264 Identities=16% Similarity=0.212 Sum_probs=194.0
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|...|.++++.|.|..|++|+.|.+|++||+........ .+.... ....| .|.+++|++.|..|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~-~fr~l~--------P~E~h--~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR-SFRQLQ--------PCETH--QINSLQYSVTGDQIL 230 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch-hhhccC--------ccccc--ccceeeecCCCCeEE
Confidence 3456777899999999999999999999999999975432111 111100 11123 799999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEE------------EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE
Q 011179 244 AGSSDDCIYVYDLEANKLSLR------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 311 (491)
+.+.....+|+|-...+.... -++|...++|.+|+|.+.+.|++++.||++|+||+.......+.+..
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 999999999999776554332 24799999999999888899999999999999999743322222221
Q ss_pred e--ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe
Q 011179 312 L--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (491)
Q Consensus 312 ~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
. .+..-+++.++|+|+|++||+|+.||.|.+|+.++.... .....-+
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~vk~ 359 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKVKD 359 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEeee
Confidence 1 133456899999999999999999999999998764322 1222333
Q ss_pred CCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc-EEEeecc--CCCCeeeeEecCCCCeEEEEeC------
Q 011179 390 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKY--HTSPVRDCSWHPSQPMLVSSSW------ 460 (491)
Q Consensus 390 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--h~~~v~~~~~sp~~~~l~s~~~------ 460 (491)
.|.....+. ++.||+||++|++-+.|+++++||++..+ ++....+ ...+-+.++|||+.++|++|..
T Consensus 360 AH~~g~~It----si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 360 AHLPGQDIT----SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred ccCCCCcee----EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 444322332 33677799999999999999999998754 4444432 2346788999999999999863
Q ss_pred CCcEEEEcCCCCC
Q 011179 461 DGDVVRWEFPGNG 473 (491)
Q Consensus 461 Dg~v~iw~~~~~~ 473 (491)
-|.+.+||-..-+
T Consensus 436 ~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 436 AGTLFFFDRMTLD 448 (641)
T ss_pred CceEEEEecccee
Confidence 4678888865543
No 117
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=7.6e-27 Score=188.56 Aligned_cols=254 Identities=12% Similarity=0.207 Sum_probs=205.2
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 113 ~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
...=.-.+.+|++.|+...++.+..+.|+++.|-+-+|||.-+|..+... .|..-|.+++|+.|.++|++|+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHH
Confidence 33334578999999999999999999999999999999999998666543 44557999999999999999999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
++|+|++..+... ....+|++.|..+.|....+.+++.+.|++|++||..++..+.++ ....+|
T Consensus 124 lrvfdln~p~App---------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~V 187 (334)
T KOG0278|consen 124 LRVFDLNRPKAPP---------------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPV 187 (334)
T ss_pred hhhhhccCCCCCc---------------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCC
Confidence 9999988654321 123478889999999998888999999999999999999999888 457789
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
+++.++ +++++|. -...+.|.+||.. ....++.+. -.-.|.+..++|+...+++|+.|..++.||..+..
T Consensus 188 tSlEvs-~dG~ilT-ia~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--- 257 (334)
T KOG0278|consen 188 TSLEVS-QDGRILT-IAYGSSVKFWDAK----SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--- 257 (334)
T ss_pred cceeec-cCCCEEE-EecCceeEEeccc----cccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc---
Confidence 999997 7787764 4567899999997 445555443 34568889999999999999999999999999843
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEE-eCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
.+-.+ ++|.... .+..|+|+|...++|++||+|++|.+..++
T Consensus 258 -------------------------------Ei~~~nkgh~gpV------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 -------------------------------EIGSYNKGHFGPV------HCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------------------------------eeeecccCCCCce------EEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 33333 4554222 233677899999999999999999987665
Q ss_pred EE
Q 011179 432 QV 433 (491)
Q Consensus 432 ~~ 433 (491)
..
T Consensus 301 ~~ 302 (334)
T KOG0278|consen 301 TY 302 (334)
T ss_pred ch
Confidence 43
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-25 Score=207.70 Aligned_cols=307 Identities=17% Similarity=0.220 Sum_probs=223.5
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCe-E
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-L 184 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l 184 (491)
..++.....+....+.++.+.|+++.=+|-=..+|.|..+|+|.|+++..++.+...... .+.|+.++|..||.. +
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d---~g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD---WGRVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc---ccceeEEEeccCCCeeE
Confidence 334444455566788899999999999999999999999999999999999776654322 458999999999965 5
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---- 260 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---- 260 (491)
++|+..|.+.+||++..+....... .|.+.|....|.|....+++++.|..+++|=.+++.
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~n---------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRN---------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeec---------------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 5666679999999998776544331 122344555555555555555555544444222110
Q ss_pred eeEEEec-------------------------------------------------------------------------
Q 011179 261 LSLRILA------------------------------------------------------------------------- 267 (491)
Q Consensus 261 ~~~~~~~------------------------------------------------------------------------- 267 (491)
.++.-.+
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 0000001
Q ss_pred -----------------------------------cC------CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 268 -----------------------------------HT------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 268 -----------------------------------h~------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
+. ..+++++.+ ..|++.+.|+..|.|-+|++. .+
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQ----SG 480 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQ----SG 480 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcc----cC
Confidence 11 346677775 678888888888888888886 55
Q ss_pred ceeeEe---ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 307 KPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 307 ~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
-....+ ..|..+|+.++...-++.+++++.+|.+++||..+..
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~---------------------------------- 526 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV---------------------------------- 526 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----------------------------------
Confidence 555555 4799999999999999999999999999999998732
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCc
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~ 463 (491)
.+..++-.... ..+.+......++.+..|-.|+++|..+.+.+..+.+|.+.|++++|||||++|++++.|++
T Consensus 527 l~~~l~l~~~~-------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 527 LKKSLRLGSSI-------TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred eeeeeccCCCc-------ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 22222211111 11122224567889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCC
Q 011179 464 VVRWEFPGNGEAA 476 (491)
Q Consensus 464 v~iw~~~~~~~~~ 476 (491)
|++||+.++....
T Consensus 600 Ir~wDlpt~~lID 612 (910)
T KOG1539|consen 600 IRTWDLPTGTLID 612 (910)
T ss_pred EEEEeccCcceee
Confidence 9999999886543
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.9e-25 Score=185.06 Aligned_cols=244 Identities=20% Similarity=0.302 Sum_probs=187.4
Q ss_pred CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
.....|..+.|+|.+..|++++.||++++|++.......... |..++.+++|.++. .+++|+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------------~~~plL~c~F~d~~-~~~~G~ 72 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------------HGAPLLDCAFADES-TIVTGG 72 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------------cCCceeeeeccCCc-eEEEec
Confidence 334579999999999999999999999999998775443332 55599999999754 699999
Q ss_pred CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
.||.|+.+|+.++... .+..|..+|.||.++ +....+++|+.|++|++||.+ ....+..+. ....|.++..+
T Consensus 73 ~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNED-QIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred cCceEEEEEecCCcce-eeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc-
Confidence 9999999999998764 456899999999998 667789999999999999998 433443333 33478888775
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|+.|++|+.+..+.+||++++....+.. .+.....+++. ++
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~r-----------------------------------eS~lkyqtR~v---~~ 185 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRR-----------------------------------ESSLKYQTRCV---AL 185 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhc-----------------------------------cccceeEEEEE---EE
Confidence 6689999999999999999965433211 01112222222 23
Q ss_pred cCCCcEEEEEecCCeEEEEECCCC----cEEEeeccCC---------CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
-|++.=.++++-||.|.+=.++.. +....|+.|. .+|++++|+|-...||||+.||.|.+||+.+.+
T Consensus 186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 346666888999999988777665 3445566664 379999999999999999999999999998765
Q ss_pred CC
Q 011179 474 EA 475 (491)
Q Consensus 474 ~~ 475 (491)
..
T Consensus 266 rl 267 (323)
T KOG1036|consen 266 RL 267 (323)
T ss_pred hh
Confidence 44
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=202.26 Aligned_cols=249 Identities=20% Similarity=0.255 Sum_probs=199.9
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
....|.+.+..+.|-++...|++|+.|..|++|++..++......+. |-.++|+++.|.+++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------------Gs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------------GSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------------ccCCCcceeeecCCCceEE
Confidence 34677888999999999999999999999999999877633222221 2334799999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+++.|+.+++|++...+...++.+|.+.|+++.|. .....+++|+.|.+|++||+. ...+..... ..+.+..|.
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceE
Confidence 99999999999999999999999999999999996 545559999999999999998 545544433 235556666
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
.+ ...+++|..|+.|++||+++. ........+. ...+
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~----------------------------------~~~~sv~~gg-------~vtS 346 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSA----------------------------------DKTRSVPLGG-------RVTS 346 (459)
T ss_pred ec--ceeeeecccccceEEEeccCC----------------------------------ceeeEeecCc-------ceee
Confidence 65 457899999999999999984 3333333333 1233
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC----CCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+..++++..|.+.+.|.++.+.|+.+.+....+.+. ....+.+.|||++.|+++|+.||.|+||++.+++..
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 356668999999999999999999999888777532 234899999999999999999999999999887644
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6.7e-24 Score=187.93 Aligned_cols=300 Identities=16% Similarity=0.246 Sum_probs=225.8
Q ss_pred CCCCCccccCCCCceEEEEEcCC--CCEEEEEE--cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE
Q 011179 113 PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 113 ~~~~~~~~~~h~~~i~~~~~s~d--g~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (491)
.....+.+......|.|++||+- |.+|+.-. .+..+.|||.+.+........ .+..|....|+|.+..|+...
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~FHPtd~nliit~ 219 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLATFHPTDPNLIITC 219 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee---ccceEEEEEeccCCCcEEEEe
Confidence 33444555667889999999983 56666543 355689999998755554433 333789999999887777666
Q ss_pred CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc
Q 011179 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 189 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h 268 (491)
..+.+.+|+.+.+...+...+.+..+ +.-|.|++|.++|. +++|.++|.|.||+..+.+..+....|
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~e------------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH 286 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKRE------------KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH 286 (626)
T ss_pred CCceEEEEEccCCceEEEeecccccc------------ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec
Confidence 78999999999887655544433221 13799999999997 899999999999999998888877799
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc--------C----------------------------CCceeeEe
Q 011179 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------V----------------------------KGKPAGVL 312 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~----------------------------~~~~~~~~ 312 (491)
.+.|.+++.. .+|.+| +|+.|..|..||-.... . ........
T Consensus 287 ~ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 287 DGGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred CCceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 9999999997 666555 59999999999832100 0 00111223
Q ss_pred ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc
Q 011179 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (491)
Q Consensus 313 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
.+|.+....++.+|+...+++++.|+.+++|+-. +..-+.
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~------------------------------------k~~wt~---- 404 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH------------------------------------KLEWTK---- 404 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEccCC------------------------------------ceeEEE----
Confidence 4677888899999999999999999999999921 111111
Q ss_pred eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 393 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 393 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+....-+..|.|.| .+|.|+..|...+.|..+...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.++.+
T Consensus 405 ---~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 405 ---IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ---EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 111122334677788 999999999999999998666554444 889999999999999999999999999999887
Q ss_pred CCC
Q 011179 473 GEA 475 (491)
Q Consensus 473 ~~~ 475 (491)
+..
T Consensus 480 g~~ 482 (626)
T KOG2106|consen 480 GRK 482 (626)
T ss_pred CcE
Confidence 654
No 122
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.4e-25 Score=182.08 Aligned_cols=278 Identities=17% Similarity=0.153 Sum_probs=200.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~ 197 (491)
.+|.+-|.|+.|.+.|+++|+|+.|++|+|||..++ .........+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996443 23333445567888999999976 479999999999999998
Q ss_pred CCCCcccc----ccccccccccccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeee------EEE
Q 011179 198 VGSGTMES----LANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLS------LRI 265 (491)
Q Consensus 198 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~------~~~ 265 (491)
-....... -..... ...-+..|+++.|.| -|-.||+++.||.|+||+....--+ ..+
T Consensus 90 E~~~~~~~~~~~Wv~~tt-----------l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTT-----------LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ecccccccccceeEEEEE-----------eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 63211111 000000 011234899999999 4668999999999999987653222 222
Q ss_pred e-------ccCCCeeEEEEecC--CCCEEEEEeCC-----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCC----
Q 011179 266 L-------AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---- 327 (491)
Q Consensus 266 ~-------~h~~~v~~~~~~~~--~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 327 (491)
. .+..+..|+.|++. ...+|+.|+.+ +.++||...........+..+.+|..+|+.++|.|+
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 2 36677899999832 24578888766 578999876444355567778899999999999996
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
-.+||+++.|| |+||.+........
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~------------------------------------------------------ 263 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIE------------------------------------------------------ 263 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhh------------------------------------------------------
Confidence 34789999999 99999875221000
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
... +.++..-+. + .-+.+..+..|.+.|..+.|+-.|..|++.|+||.|++|...-.
T Consensus 264 -~ee-~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 264 -EEE-VLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred -hhc-ccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 000 000110011 1 22456678899999999999999999999999999999986543
No 123
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=177.93 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=199.9
Q ss_pred eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
+...+|+.+++.+.++.+|.+|.+++.|.+..||-..+|+.+... .||++.|+|+..+.+.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty----------------~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY----------------DGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee----------------cCCCceEEEEEecCCccee
Confidence 345678889999999999999999999999999998888765443 3799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-----CCeEEEEeccccc---CCCceeeEecc
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN---VKGKPAGVLMG 314 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~---~~~~~~~~~~~ 314 (491)
++|+.|.++++||+++|+++..+ ....+|..+.|+ .++++++.... .+.|.++|++... ....+...+..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999999999999998888 456789999998 77888777654 4689999997322 23456777778
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee
Q 011179 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
+.+.++.+.|.|-++.|++|..||.|.+||++++. +.+..-+.|..
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------------------------------~~v~s~~~h~~- 191 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------------------------------ELVDSDEEHSS- 191 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------------------------------eeeechhhhcc-
Confidence 88999999999999999999999999999999843 23333333442
Q ss_pred EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeC
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~ 460 (491)
. ...+.+++|..++++++.|.+-++||..+.++++++. -..||++.+++|-...++-|+.
T Consensus 192 -~----Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 192 -K----INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -c----cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCC
Confidence 2 2344677899999999999999999999999999987 5679999999998887776654
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=185.98 Aligned_cols=270 Identities=22% Similarity=0.349 Sum_probs=224.2
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.+++...++++.. .......+|+..|..++-......+.+++.|.+.+||.++++.+...+.
T Consensus 126 rivssFk~~t~~~---------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF---------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--------- 187 (481)
T ss_pred hheeeecCCceeE---------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------
Confidence 4666666666322 1222446788889999988878889999999999999999999865543
Q ss_pred ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC------CCC--------------------------------
Q 011179 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL------EAN-------------------------------- 259 (491)
Q Consensus 218 ~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~------~~~-------------------------------- 259 (491)
||.+.|.+++|++.+.++++++.|++..||.. ...
T Consensus 188 -------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 188 -------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred -------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 78899999999999999999999999999962 110
Q ss_pred --eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 260 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 260 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
.++..+.+|.+.|.+..|. ..++.+++++.|.+..+||++ .+.++..+.+|....+.++-+|..+++++.+.|
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred eeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcchhccccccCCcceEEEEeccC
Confidence 1345677999999999997 889999999999999999998 899999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
.+.++||++.. -+.+..|.||.. ++....|.. +..+++|+
T Consensus 336 tTFRLWDFRea---------------------------------I~sV~VFQGHtd--tVTS~vF~~-----dd~vVSgS 375 (481)
T KOG0300|consen 336 TTFRLWDFREA---------------------------------IQSVAVFQGHTD--TVTSVVFNT-----DDRVVSGS 375 (481)
T ss_pred ceeEeccchhh---------------------------------cceeeeeccccc--ceeEEEEec-----CCceeecC
Confidence 99999999852 277889999984 344444443 45689999
Q ss_pred cCCeEEEEECCCCc-EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCC
Q 011179 418 HDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 478 (491)
Q Consensus 418 ~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~ 478 (491)
.|.+|+|||+++.+ ++.+++ ..++++.++.+..++.|+.--++..|++||+++......+
T Consensus 376 DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 99999999998854 677776 5678999999999999999999999999999988765544
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.7e-24 Score=198.69 Aligned_cols=300 Identities=19% Similarity=0.269 Sum_probs=228.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC---eEE-EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~---~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
.+.||++-|+++.|+|.+..|++++.|.++.+|..++. +.- .++-...+..+.....-|+|++..+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45699999999999999999999999999999987765 111 11112223344588899999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTS 270 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~ 270 (491)
+|..+....-... ....||...|.+++|+|.|.+|++.+.|-+-+++-.-..+ .+.+-.-|.-
T Consensus 342 lWkt~d~~~w~~~-------------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 342 LWKTKDKTFWTQE-------------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEeccCccceeec-------------cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 9983322111111 1124788899999999999999999999999998654222 2233346888
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEeccc----------c---c---------------C-----------C------
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRC----------L---N---------------V-----------K------ 305 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~---~---------------~-----------~------ 305 (491)
.++|+++. +....+++|.....+|+|+... . . . .
T Consensus 409 Dl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 409 DLTCLSFV-NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred cceeeehc-cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 99999997 5467888999999999998540 0 0 0 0
Q ss_pred ---------------------------CceeeEeccccCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCccc
Q 011179 306 ---------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNAS 353 (491)
Q Consensus 306 ---------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~ 353 (491)
...+..+.+|.-.|.+++.+|+++++|+++... .|++|+..+-
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----- 562 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----- 562 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-----
Confidence 001234567888999999999999999988643 5899998772
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc--
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-- 431 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-- 431 (491)
..+..+.+|+...+.+ +|||||++|++.+.|.++.+|......
T Consensus 563 -----------------------------~~~~~L~~HsLTVT~l------~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 563 -----------------------------LQVQELEGHSLTVTRL------AFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred -----------------------------hhhheecccceEEEEE------EECCCCcEEEEeecCceEEeeeeecccch
Confidence 3444677777443333 677799999999999999999875432
Q ss_pred --EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 432 --QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 --~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
....++.|..-|.+++|+|++.+++|++.|.+|++|..+..
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23346789999999999999999999999999999999877
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=201.67 Aligned_cols=300 Identities=22% Similarity=0.276 Sum_probs=233.0
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
..-.++|+.++|.-||+ .+|+|+..|.+-+||++....+.. ....|.+.|....|.|....+++++.|+.+++|=.+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 33369999999999997 567788889999999998754443 334667789999999999999999999998888655
Q ss_pred CCccc-ccccccccc----------------------c-----------------------------------------c
Q 011179 200 SGTME-SLANVTEIH----------------------D-----------------------------------------G 215 (491)
Q Consensus 200 ~~~~~-~~~~~~~~~----------------------~-----------------------------------------~ 215 (491)
++... +.......| + .
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 33210 000000000 0 0
Q ss_pred ccccccC----------------------------CC----Cc------eecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011179 216 LDFSAAD----------------------------DG----GY------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (491)
Q Consensus 216 ~~~~~~~----------------------------~~----~h------~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 257 (491)
..|.... .+ .+ ...+++++.++.|++.+.|+..|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 0000000 00 11 2568899999999999999999999999999
Q ss_pred CCeeeEEE---eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe
Q 011179 258 ANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 258 ~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
+|-....+ ..|..+|+.++.. .-++.+++++.+|.+++||.. ....+..+. -...++++..+.....++.+
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred cCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhhhh
Confidence 99888777 4899999999994 778899999999999999996 444444443 34667888888888899999
Q ss_pred eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE
Q 011179 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
..|-.|+++|..+ ...++.|.||....+- .+|||||++|+
T Consensus 553 ~ddf~I~vvD~~t----------------------------------~kvvR~f~gh~nritd------~~FS~DgrWli 592 (910)
T KOG1539|consen 553 LDDFSIRVVDVVT----------------------------------RKVVREFWGHGNRITD------MTFSPDGRWLI 592 (910)
T ss_pred cCceeEEEEEchh----------------------------------hhhhHHhhccccceee------eEeCCCCcEEE
Confidence 9999999999987 3567778888854433 36788999999
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC-CcEEEEcC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEF 469 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D-g~v~iw~~ 469 (491)
+++.|++|++||+.++.++-.+. -..+++.+.|+|+|.+|||+..| .-|++|.-
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999999999999999998775 56789999999999999999988 56999964
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=187.02 Aligned_cols=266 Identities=19% Similarity=0.258 Sum_probs=191.6
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccc----cccccCCCCceecEEEEEEcCCC
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL----DFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~s~~~ 239 (491)
....|..++.+.+|+|||.++++|+.|..|+|.|++..-... ...+...+- ..-......|..+|+++.|+|..
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345677899999999999999999999999999987321111 111111000 01112334688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceee---Eecc
Q 011179 240 RELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG---VLMG 314 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~ 314 (491)
..|++|+.|++|+++|+......+.++ ....+|.++.|+ |.|.+|+.|....++++||+. +.++.. .-..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~----T~QcfvsanPd~q 259 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVN----TYQCFVSANPDDQ 259 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEecc----ceeEeeecCcccc
Confidence 999999999999999997654332222 445689999997 899999999999999999997 333322 2346
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee
Q 011179 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
|.+.|+++.+++.+++.++++.||.|+|||=-+ ++++.++......
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS----------------------------------~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS----------------------------------NRCVRTIGNAHGG 305 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeecccc----------------------------------HHHHHHHHhhcCC
Confidence 899999999999999999999999999999766 2444444332222
Q ss_pred EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC-----CCCeeeeEecCCCCeEEEEeC-CCcEEEEc
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-----TSPVRDCSWHPSQPMLVSSSW-DGDVVRWE 468 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~l~s~~~-Dg~v~iw~ 468 (491)
..+ .+..|+.+|+||++.+.|..+++|.+.+++.+..+.+- ..--+...|+....+++.-.. .+.+.-||
T Consensus 306 sev----cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 306 SEV----CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred cee----eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 222 23356669999999999999999999999999888643 112234556665555554332 34566676
Q ss_pred CCCCCC
Q 011179 469 FPGNGE 474 (491)
Q Consensus 469 ~~~~~~ 474 (491)
-++...
T Consensus 382 aRtadr 387 (430)
T KOG0640|consen 382 ARTADR 387 (430)
T ss_pred ccchhh
Confidence 665543
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-23 Score=191.76 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=181.7
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
..-++....+....++...+.|++++.+|.+..++.|+.||.+..++...+....... .....+.|.++.|+|++..|+
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEE
Confidence 3455666666667778889999999999999999999999988888888775444433 334456899999999999999
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
.|+.||.|++||..++.........- +++ ..+...-|+++.|-.++ .|++|...|+|.+||...+.++..+
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~l------~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQL--DRL------SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecc--ccc------ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh
Confidence 99999999999999887655221110 000 00122368899998777 5999999999999999999999999
Q ss_pred eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 266 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
..|.+.|.+++.. ++++.+++++.|+.|..+.................|...|.+++..++ .+++|+.|..+.+-..
T Consensus 242 ~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 242 SCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 9999999999997 788899999999999988876332222244455678899999999877 8999999999888776
Q ss_pred CC
Q 011179 346 RK 347 (491)
Q Consensus 346 ~~ 347 (491)
+.
T Consensus 319 ~~ 320 (691)
T KOG2048|consen 319 RE 320 (691)
T ss_pred cc
Confidence 65
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6e-23 Score=181.99 Aligned_cols=286 Identities=17% Similarity=0.296 Sum_probs=213.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
-.+...+..|....|+|.+.-|+.....|.+.+|+.+.+...++...... .+..|.|++|.++|. +++|..+|.|.||
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw 272 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIW 272 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEE
Confidence 34455677889999999876666656678999999998866555444332 336799999999997 7799999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----------------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------------- 260 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------- 260 (491)
+..+.+...... .|.+.|.+++...+|. |++|+.|..|..||-.-.+
T Consensus 273 ~~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 273 SKGTNRISKQVH----------------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred eCCCceEEeEee----------------ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEE
Confidence 986554432221 3677999999999997 5669999999999832110
Q ss_pred ------------------------eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc
Q 011179 261 ------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 261 ------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
......+|......++.. ++.+++++++.|+.+++|+- .++..... -.
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v~lW~~------~k~~wt~~-~~ 407 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHVRLWND------HKLEWTKI-IE 407 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceEEEccC------CceeEEEE-ec
Confidence 011123677788888886 77889999999999999992 23333222 34
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
.++.++.|+|.| .+|.|...|...+.|.++ +.+.+..... ..
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-----------------------------------~~lv~~~~d~--~~ 449 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTET-----------------------------------QDLVTIHTDN--EQ 449 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEeccc-----------------------------------ceeEEEEecC--Cc
Confidence 788899999999 999999999999999987 2222222222 11
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEee-ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~-~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+. ...|+|+|.+||.|+.|+.|+||.+... .....+ +.|..+|+.+.||+|+++|.+-+.|-.|..|....
T Consensus 450 ls----~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 450 LS----VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred eE----EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 21 2267789999999999999999998654 333333 23458999999999999999999999999994433
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=203.88 Aligned_cols=249 Identities=17% Similarity=0.240 Sum_probs=201.3
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc-cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
..|...-+.++|.|+|.+|++++.||.|++|+..+.. ...... .+...|.+++.. +.+|++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------~~g~~v~~ia~~--s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------ISGELVSSIACY--SNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------ccCceeEEEeec--ccceEE
Confidence 3566678899999999999999999999999976552 111111 022256666654 558999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEE
Q 011179 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (491)
|+.+++|.+|.+..++.-..+....-++++++|+ .+|++++.|+.|-.|++-+.. .......+.+|.++|.++.|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeE
Confidence 9999999999999988766666678899999998 899999999999999999997 77788899999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce--eEeeEEEEe
Q 011179 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHF 402 (491)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 402 (491)
+|++.+||+.+.||.|++||+.+...... +.+-.. .....+.+.
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~t----------------------------------l~~v~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKT----------------------------------LTGVDKDNEFILSRICT 192 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhh----------------------------------cccCCccccccccceee
Confidence 99999999999999999999987443222 111100 001134455
Q ss_pred cccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.++|+|+|..++..+.|+.|.+|+..+.+....+. .+...+.+++|+|.|+|||+++.||.|.|||+..
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 66888898889999999999999999998887775 3455599999999999999999999999999986
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.2e-25 Score=191.77 Aligned_cols=271 Identities=19% Similarity=0.254 Sum_probs=210.8
Q ss_pred CEEEEEEc-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc
Q 011179 137 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
.+++++.. ...|.+|.+.......... -..++|.+++-+|+|.+|+.|+..+.|++|.+.+|....+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 45655543 4478999988754444222 233479999999999999999899999999999999866552
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeEEEeccCCCeeEEEEecC-CCCEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI 285 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~-~~~~l 285 (491)
+|=..|+++.|+.||.+|++|+.||.|.+|++. +-++...+..|.-+|+++...+. ....+
T Consensus 121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 355589999999999999999999999999873 23567788899999999988632 34689
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeee
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
+++|.|.++++||+. .+..+..+. ....+.+++.+|-++.+..|+.+|.|.+.++.........
T Consensus 192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~----------- 255 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG----------- 255 (476)
T ss_pred EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc-----------
Confidence 999999999999997 666665554 4578999999999999999999999999888663311000
Q ss_pred eeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeee
Q 011179 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
-.....+..+..+..+.||.....+... +++.||.+|++|+.||.|+|||+.+.+++.++....++|+.
T Consensus 256 -------v~~k~~~~~~t~~~~~~Gh~~~~~ITcL----ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 256 -------VNQKGRHEENTQINVLVGHENESAITCL----AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred -------ccccccccccceeeeeccccCCcceeEE----EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 0012223345677888888874444333 55559999999999999999999999999998877899999
Q ss_pred eEecCCCC
Q 011179 446 CSWHPSQP 453 (491)
Q Consensus 446 ~~~sp~~~ 453 (491)
+.+.|-.+
T Consensus 325 L~i~~~~~ 332 (476)
T KOG0646|consen 325 LQINPLER 332 (476)
T ss_pred eEeecccc
Confidence 99977544
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.5e-24 Score=197.68 Aligned_cols=320 Identities=13% Similarity=0.189 Sum_probs=231.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+.||.+.|..++|+|.|.+|++.+.|-+-|+|-.- ......++..++-|...++|++|-+....+++|.....+|+|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 3557999999999999999999999999999998654 223356666677788899999999877778899999999999
Q ss_pred ECCCCcccccccc---------------------------c--ccccccc----c-------------------------
Q 011179 197 DVGSGTMESLANV---------------------------T--EIHDGLD----F------------------------- 218 (491)
Q Consensus 197 ~~~~~~~~~~~~~---------------------------~--~~~~~~~----~------------------------- 218 (491)
+....-......+ . ....+.. +
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 7642110000000 0 0000000 0
Q ss_pred --cccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC
Q 011179 219 --SAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 219 --~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 291 (491)
..+...||...|++++.+|+++.+|+++.. ..|++|+..+-..+..+.+|.-.|+.++|+ +++++|++.+.|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence 001123999999999999999999998864 459999999988888899999999999998 899999999999
Q ss_pred CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCC
Q 011179 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 292 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
.++.+|...............+.|+.-|..+.|+|++.+++|+|.|..|++|.......
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d--------------------- 652 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD--------------------- 652 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh---------------------
Confidence 99999987532222223344778999999999999999999999999999999876421
Q ss_pred CCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC-cEEEEEecCCeEEEEECCC-------Cc--E---EEeecc
Q 011179 372 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS-------GE--Q---VAALKY 438 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-------~~--~---~~~~~~ 438 (491)
+.+..+........+....+.+...++. ..+++|-..|.|.+|.... +. . +....+
T Consensus 653 -----------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 653 -----------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred -----------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 1111111111112233334444444433 4788899999999999651 11 1 111235
Q ss_pred CCCCeeeeEecCC--------CC--eEEEEeCCCcEEEEcCC
Q 011179 439 HTSPVRDCSWHPS--------QP--MLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 439 h~~~v~~~~~sp~--------~~--~l~s~~~Dg~v~iw~~~ 470 (491)
|.+.|+.+.|.|. .. .|++|++|..++++++.
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred hHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 7788999999975 22 57999999999999875
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=8.2e-25 Score=191.67 Aligned_cols=219 Identities=15% Similarity=0.209 Sum_probs=179.5
Q ss_pred CCCccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEECCC-CCeEEEEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPD-QRHLVYAS 188 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~ 188 (491)
++...|.+|...-+.++|++... .|++|+.|++|++||+..... +.......+|...|..++|+|- ..++++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 44568899999999999999654 789999999999999976433 4455566889999999999995 46788999
Q ss_pred CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-eeeEEEe
Q 011179 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-KLSLRIL 266 (491)
Q Consensus 189 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 266 (491)
.|+.+.|||++++ ...... ...+|..+|.|++|+| ++..||+|+.|++|.+||+++. +++..+.
T Consensus 248 dd~~L~iwD~R~~-~~~~~~-------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSH-------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcc-------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 9999999999974 211111 1236888999999999 6678899999999999999875 4677888
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccC----------CCceeeEeccccCcEEEEEEcCCCCE-EEEee
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEGITFIDSRGDGRY-LISNG 335 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~ 335 (491)
+|...|.++.|+|.....|++++.|+.+.+||+..... ....+....||...|..+.|+|+..+ |++.+
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 99999999999999999999999999999999863321 22345677899999999999998765 66788
Q ss_pred CCCcEEEEeCCC
Q 011179 336 KDQAIKLWDIRK 347 (491)
Q Consensus 336 ~dg~i~iwd~~~ 347 (491)
.|+.+.||.+..
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999874
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.1e-23 Score=191.31 Aligned_cols=283 Identities=14% Similarity=0.238 Sum_probs=220.2
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
-..+|.|+||+.+.+.||.+-.+|.|.||++..++........ +....|.+++|++ +..|.+.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 3578999999999999999999999999999998777666554 4556899999994 5568888899999999999887
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEecC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~ 280 (491)
....... ..+.|++++.+|.+..+++|+.||.++.++...++.... +....+.|.+++|+ +
T Consensus 102 ~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~ 164 (691)
T KOG2048|consen 102 QKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-P 164 (691)
T ss_pred eeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-C
Confidence 6544332 223899999999999999999999888888888776543 33456899999997 8
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeE-------ecc-ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-------LMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
++..+++|+.||.|++||.. .+..+.. +.. ...-|+++.|-.++ .|++|...|+|.+||...+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT--- 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT--- 236 (691)
T ss_pred CccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc---
Confidence 88899999999999999997 4444431 111 22347788877554 79999999999999988743
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
.+..+..|.. -.++++.++++.++++++.|+.|.-|...+++.
T Consensus 237 -------------------------------LiqS~~~h~a------dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 237 -------------------------------LIQSHSCHDA------DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred -------------------------------hhhhhhhhhc------ceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 3333344432 123335566889999999999999998776643
Q ss_pred ----EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 433 ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ----~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
......|...|.+++..++ .|++|+.|..+.+=....
T Consensus 280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 2233478889999999877 899999999998876654
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=6.2e-25 Score=194.33 Aligned_cols=253 Identities=21% Similarity=0.301 Sum_probs=201.7
Q ss_pred CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc-ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.|..-|.++.++...+++.+|+ .|.|+|||+....... +..+... ....-|.++.+.|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl------------~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL------------NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc------------CcccceeeeEecCCCceEEec
Confidence 4566788899999999998887 5889999997542211 1111111 122368999999999999999
Q ss_pred eCCCeEEEEECCCCeeeE--EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 246 SSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+.-.++.|||+....+.. .+..-.-.+..++.+ ++.++.+++..||.|.|||++ +...++.+.+|.+.+.||.
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCID 558 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEE
Confidence 999999999998765432 233333456778887 889999999999999999998 8889999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
++++|..|.+|+-|++|+.||++....... |.. ..-+|+
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hdF----~SQIfS 597 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HDF----SSQIFS 597 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hhh----hhhhee
Confidence 999999999999999999999998543322 111 123466
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~ 479 (491)
+-++|.+.+|++|-.++.+.|... ++.....+..|.+-|.++.|.+-|+++++.+.|..+..|....+...-...
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred cccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 778889999999999999999886 455556677799999999999999999999999999999998876554433
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.8e-26 Score=210.45 Aligned_cols=257 Identities=25% Similarity=0.347 Sum_probs=214.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
+.+++.....-.+++|+.... ..|...+.++..-..++.+++|+.|-.+-+|.+........
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF---------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred ccccceeeeeeccccccchhh---------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence 334555555667788887642 24445677777766788999999999999998765433221
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
..+|..+|.++.|+++...|++|+.+|+|++||++..+.++.+.+|...+.++.|+ |-+.++++|+.|+.++
T Consensus 66 -------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 66 -------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLK 137 (825)
T ss_pred -------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccce
Confidence 23688899999999999999999999999999999999999999999999999997 7889999999999999
Q ss_pred EEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
+||.+ ...+...+.+|...+..+.|+|+|++++.++.|..++|||+..
T Consensus 138 iwD~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a---------------------------- 185 (825)
T KOG0267|consen 138 IWDIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA---------------------------- 185 (825)
T ss_pred ehhhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc----------------------------
Confidence 99998 7788899999999999999999999999999999999999987
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeE
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 455 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 455 (491)
+.....|+.|..... ++.|.|..-++++|+.|++|++||+++.+.+...+.....|.+++|+|++..+
T Consensus 186 ------gk~~~ef~~~e~~v~------sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 186 ------GKLSKEFKSHEGKVQ------SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred ------ccccccccccccccc------ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 355566666653222 23466678889999999999999999999998888888999999999999988
Q ss_pred EEEeCCC
Q 011179 456 VSSSWDG 462 (491)
Q Consensus 456 ~s~~~Dg 462 (491)
++|..+.
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 8886543
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=3.1e-24 Score=177.67 Aligned_cols=234 Identities=19% Similarity=0.305 Sum_probs=179.6
Q ss_pred CCceeEEEEEECC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEE
Q 011179 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (491)
Q Consensus 167 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~ 244 (491)
.|.+.|+++...+ .|+++++|+.||.|.+||++.............+.-+ .......+|+..|.++.|-| |..++.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeeecCceeec
Confidence 4556899998887 5799999999999999999865421111111111100 12223458999999999999 6678999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC--CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
++.|.+++|||..+.+....+. -.+.|.+-+++|-. .-++|+|..|-.|++.|+. .+.....+.+|.+.|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEE
Confidence 9999999999999988776663 45667777776432 3578889999999999998 888999999999999999
Q ss_pred EEcCCCCE-EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 323 DSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 323 ~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
.|+|...+ |++|+.||.|++||++...
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRras---------------------------------------------------- 222 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRAS---------------------------------------------------- 222 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeeccc----------------------------------------------------
Confidence 99998765 6789999999999998611
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcEE---EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV---AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
|..++.|..+++.. ..-.+|.+.|+.++|+.|+.++++++.|..+++|+...++..-
T Consensus 223 ------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ------------------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 22344444333322 2234799999999999999999999999999999999886543
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.8e-25 Score=188.82 Aligned_cols=263 Identities=17% Similarity=0.215 Sum_probs=201.1
Q ss_pred cccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC
Q 011179 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (491)
|....++..-.....+.+..|.+.|..++++. ..+++++.|.+|+.|.++.. .+..+ .. ...+..+.-+..+.
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti-lg---~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI-LG---KSVYLGIDHHRKNS 160 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee-ec---cccccccccccccc
Confidence 34445555556667889999999999999987 56888999999999998763 22222 11 22566777777777
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
.+++++. .|.|||......+....... ..|.++.|+|.. ..|+++..|+.|.+||++++.+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~smswG~----------------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVSSMSWGA----------------DSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cccccCc--eeeecccccCCccceeecCC----------------CceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 7888764 59999987665544433211 168999999954 5677777999999999999998
Q ss_pred eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEE
Q 011179 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 262 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 341 (491)
+..+. -...-+.|+|+| +.-.|++|+.|..++.||++. -..++....+|.+.|.+++|+|.|+.|++|+.|.+|+
T Consensus 223 l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 223 LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence 87764 344568899995 888899999999999999983 4567888999999999999999999999999999999
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCe
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 421 (491)
||..+.+..... +.. .-+...++..||.|.+|+++|+.|+.
T Consensus 298 If~~~~~~SRdi----------------------------------Yht-----kRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 298 IFPVNHGHSRDI----------------------------------YHT-----KRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred EeecCCCcchhh----------------------------------hhH-----hhhheeeEEEEeccccEEEecCCCcc
Confidence 999987443211 111 11233455567779999999999999
Q ss_pred EEEEECCCCcEEE
Q 011179 422 VYVYDLVSGEQVA 434 (491)
Q Consensus 422 i~iwd~~~~~~~~ 434 (491)
|++|.....+.+.
T Consensus 339 vRlWka~Aseklg 351 (433)
T KOG0268|consen 339 VRLWKAKASEKLG 351 (433)
T ss_pred eeeeecchhhhcC
Confidence 9999976554443
No 139
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=2e-23 Score=180.33 Aligned_cols=327 Identities=19% Similarity=0.202 Sum_probs=212.8
Q ss_pred CCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 124 ~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+|+.+.|.+++. +||+|+.|..|+||.+..+ ..+.-......|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999988653 2455555667888899999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
....-...............-.......+|...|..++|+|++.++++++.|..+++||+..+.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 87631110000000000000001112346888999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccC-----------------CCceeeEeccccC----cEEEEEEcCCCCEEEEee
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNV-----------------KGKPAGVLMGHLE----GITFIDSRGDGRYLISNG 335 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~~----~i~~~~~~~~~~~l~s~~ 335 (491)
|. +.++++++-+.|...+.+++..... .+...+.+ |.+ -...++|+|+|.++++.+
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEccc
Confidence 95 8889999999998777766541110 00111111 211 134578899999988754
Q ss_pred C----CCcE-----EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 336 K----DQAI-----KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 336 ~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
. ++.+ ++++-.....+....+........+ .+......+........ .+.+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lav--------------r~~pVy~elrp~~~~~~----~~~l-- 309 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAV--------------RFSPVYYELRPLSSEKF----LFVL-- 309 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEE--------------EeeeeEEEecccccccc----cccc--
Confidence 2 1222 2232221111111111010000000 00111111111110000 1111
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCcEEEeec-cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
|-+-.+|.++. +.|+|||.++.+++..+. -|-..|++++|++||..|+..+.||...+-.++..+.-
T Consensus 310 -pyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 310 -PYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -ccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 23344555554 569999999988877664 58899999999999999999999999888777665543
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.9e-24 Score=197.33 Aligned_cols=240 Identities=23% Similarity=0.299 Sum_probs=197.2
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEE-EEEcC-CCCE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFST-DGRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~-~~~~ 241 (491)
...+|...|..++..+.. .+++++.||++++|+-..++........ +|.+-|.. ++|-+ ++-.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~--------------~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE--------------GPKGFIANSICYAESDKGR 73 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc--------------cCcceeeccceeccccCcc
Confidence 446787788888876544 7899999999999998766654432221 23334444 77765 5556
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEE
Q 011179 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+++|+.|++|.+|...+..++..+.+|...|.++... .++. +++||.|.++++|-. +++...+.+|...|++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~------~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRI------GELVYSLQGHTASVWA 145 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEecc------hhhhcccCCcchheee
Confidence 9999999999999999999999999999999999975 5555 899999999999985 4666779999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+..-|++ .++||+.|.+|++|.-. ..+++|.+|........
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~~------------------------------------~~l~tf~gHtD~VRgL~-- 186 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKGG------------------------------------TLLKTFSGHTDCVRGLA-- 186 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccCC------------------------------------chhhhhccchhheeeeE--
Confidence 9999887 89999999999999863 57788899884433322
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+- ++..+++++.||.|++|++ +|+++....+|..-|.+++..+++..+++++.|++++||+...
T Consensus 187 ----vl-~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 187 ----VL-DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred ----Ee-cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 11 4556899999999999999 8999999999999999999888889999999999999999873
No 141
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-24 Score=202.73 Aligned_cols=209 Identities=17% Similarity=0.229 Sum_probs=173.7
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCCeE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 193 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i 193 (491)
.+...+.+|.+.|..+.||.++ +|++++.|.+|++|++....++... .|..-|+|++|+| |.+|+++|+-|+.|
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccce
Confidence 3446778999999999999765 8999999999999999987776653 4666899999999 77999999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--cc---
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AH--- 268 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h--- 268 (491)
+||++...+......+.. -|++++|.|||++.++|+.+|.+++|+....+...... .|
T Consensus 435 RiWsI~d~~Vv~W~Dl~~-----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRD-----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred EEeecCcCeeEeehhhhh-----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999998877655444332 69999999999999999999999999999887765443 11
Q ss_pred ---CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc--EEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 269 ---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 269 ---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
...|+.+.|.|.+...+++.+.|..|||+|.+ ....+..++++... -....|+.||++|++++.|..|++|
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 22799999997777778888999999999997 66777777765433 3456789999999999999999999
Q ss_pred eCCCCC
Q 011179 344 DIRKMS 349 (491)
Q Consensus 344 d~~~~~ 349 (491)
++....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 986543
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.3e-26 Score=209.50 Aligned_cols=201 Identities=28% Similarity=0.498 Sum_probs=183.0
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 226 h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+ ....+|++|+.+|+|++||+. .
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----e 101 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----E 101 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----h
Confidence 55577777776778899999999999999998888888899999999999997 788899999999999999998 8
Q ss_pred CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.++.+.+|...+.++.|+|-+.+++.|+.|+.+++||++. ..+.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~ 147 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCS 147 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCce
Confidence 888999999999999999999999999999999999999997 3677
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEE
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~ 465 (491)
..+++|.....++ .|+|+|++++.|+.|..++|||+..|+.+..|+.|.+.+..+.|+|..-++++|+.|++|+
T Consensus 148 ~~~~s~~~vv~~l------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 148 HTYKSHTRVVDVL------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eeecCCcceeEEE------eecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 7888876444433 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 011179 466 RWEFPG 471 (491)
Q Consensus 466 iw~~~~ 471 (491)
+||++.
T Consensus 222 f~dlet 227 (825)
T KOG0267|consen 222 FWDLET 227 (825)
T ss_pred eeccce
Confidence 999983
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=179.93 Aligned_cols=213 Identities=19% Similarity=0.280 Sum_probs=169.0
Q ss_pred cccCCCCceEEEEEcCCCC--EEEEEEcCCeEEEEECCCC-------------eEEEEEeecCCCceeEEEEEECCCC-C
Q 011179 119 PVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPDQ-R 182 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~--~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~sp~~-~ 182 (491)
....|.+.++.+.-++-|+ +.|+=+..|.|.||++... .....+....+|...=+.++|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 4456788888888877664 5556677899999998532 1223344556777778999999933 3
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK- 260 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~- 260 (491)
.|++|..-+.|++|...++....-.. ...+|+..|..++|||. ...|++|+.||+|+|||++.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~-------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQR-------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccccCccccceEeeeeccCceeecCc-------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 47888888899999998876533222 23468889999999994 4589999999999999999873
Q ss_pred --eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCC
Q 011179 261 --LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 337 (491)
Q Consensus 261 --~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d 337 (491)
++. .+.|.+.|+.|.|+ ....+|++|+.||+++|||+|... .++++..+.-|..+|++|.|+|. ...|++++.|
T Consensus 293 ~~~~~-~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 293 KAAVS-TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred cceeE-eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 333 37899999999998 555599999999999999999776 55899999999999999999995 4578888999
Q ss_pred CcEEEEeCCC
Q 011179 338 QAIKLWDIRK 347 (491)
Q Consensus 338 g~i~iwd~~~ 347 (491)
.+|.|||+..
T Consensus 370 ~QitiWDlsv 379 (440)
T KOG0302|consen 370 NQITIWDLSV 379 (440)
T ss_pred CcEEEEEeec
Confidence 9999999975
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7e-25 Score=212.69 Aligned_cols=291 Identities=19% Similarity=0.327 Sum_probs=220.2
Q ss_pred EEEEEcCCCC-EEEEEE----------cCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEECCCCCe----EEEEECC
Q 011179 128 YVSQFSADGS-LFVAGF----------QASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRH----LVYASMS 190 (491)
Q Consensus 128 ~~~~~s~dg~-~la~~~----------~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~~d 190 (491)
-.++|||++. ++|+|. .+.++.||.++..... .+...........+.++|.+.+.. |+.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 4578999986 566543 2455667765432111 111122222346889999998765 8888999
Q ss_pred CeEEEEECCCC---ccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 191 PIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 191 ~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
|.|.+||...- ....+.. ....|.+.|..+.|++... .||+|+.||.|.|||+...+......
T Consensus 90 G~I~ly~p~~~~~~~~~~~la-------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLA-------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG 156 (1049)
T ss_pred CceEEecchhhccCcchHHHh-------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence 99999998652 2111111 1235888999999999554 99999999999999998866544442
Q ss_pred --ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC--cEEEEEEcCCC-CEEEEeeCCC---
Q 011179 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDG-RYLISNGKDQ--- 338 (491)
Q Consensus 267 --~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~s~~~dg--- 338 (491)
...+.|.+++|+....++|++++.+|.+.|||++ ..+++..+..+.. .+..+.|+|+. ..|++++.|.
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 2457899999997778899999999999999999 6677777766554 47789999985 3566666553
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
.|.+||+|... .+++++.+|. ..++.+.|++. |..+|++++.
T Consensus 233 viqlWDlR~as---------------------------------sP~k~~~~H~--~GilslsWc~~---D~~lllSsgk 274 (1049)
T KOG0307|consen 233 VIQLWDLRFAS---------------------------------SPLKILEGHQ--RGILSLSWCPQ---DPRLLLSSGK 274 (1049)
T ss_pred eeEeecccccC---------------------------------Cchhhhcccc--cceeeeccCCC---CchhhhcccC
Confidence 59999998743 5566777777 45556666665 6699999999
Q ss_pred CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCC
Q 011179 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~ 473 (491)
|+.|.+|+..+++.+..+......+..+.|+|... .++.++.||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999998889999999999888 88889999999999998776
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=179.07 Aligned_cols=263 Identities=21% Similarity=0.268 Sum_probs=190.0
Q ss_pred CCCceeEEEEEECCCC--CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCE
Q 011179 166 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~ 241 (491)
..|.+.++-+.-++-+ .+.++-+..|.|+||++...-......-...+....-+.....+|...=+.++||| .| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 3555667777776654 45566677899999998642110000000111111222334457888899999999 34 4
Q ss_pred EEEEeCCCeEEEEECCCCeeeE---EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc
Q 011179 242 LVAGSSDDCIYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
|++|..-+.|++|...++.... .+.+|+..|-.++|+|.....|++|+.||+|+|||+|... .+.....+.|.+.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--KKAAVSTKAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--ccceeEeeccCCc
Confidence 8888888899999998876532 3557999999999998889999999999999999999542 2233344889999
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|+.|.|+.+..+||+|+.||+++|||+|..+. ++++..|+-|.... .
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~-------------------------------~~pVA~fk~Hk~pI--t 351 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKS-------------------------------GQPVATFKYHKAPI--T 351 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccC-------------------------------CCcceeEEeccCCe--e
Confidence 99999999988999999999999999998543 47888898888444 3
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcE----------------EEeeccC--CCCeeeeEecCCCC-eEEEEe
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----------------VAALKYH--TSPVRDCSWHPSQP-MLVSSS 459 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~h--~~~v~~~~~sp~~~-~l~s~~ 459 (491)
.+.|+|. +...|++++.|.+|.+||+.-..- ...+--| ...|..+.|++.-+ +|++.+
T Consensus 352 sieW~p~---e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 352 SIEWHPH---EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred EEEeccc---cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 4455554 567899999999999999853210 0111124 35688999999877 888999
Q ss_pred CCCcEEEEc
Q 011179 460 WDGDVVRWE 468 (491)
Q Consensus 460 ~Dg~v~iw~ 468 (491)
.|| +.||.
T Consensus 429 ~dG-fnVfk 436 (440)
T KOG0302|consen 429 IDG-FNVFK 436 (440)
T ss_pred ccc-eeEEE
Confidence 998 45553
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.6e-22 Score=168.83 Aligned_cols=309 Identities=20% Similarity=0.270 Sum_probs=218.6
Q ss_pred ccccCCCCceEEEEEcC----C-CCEEEEEEcCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEECCCC----CeEEE
Q 011179 118 WPVDQTTSRAYVSQFSA----D-GSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQ----RHLVY 186 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~----d-g~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~ 186 (491)
.....|..+|+.++|.+ + -..+|+++. ..+.+|.....- .+.+......+......++|+-+. .++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34467899999999985 2 245666654 478888876542 222223333466678888887653 57899
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
++.-|.|+|.|+.+++..... .+|...|..+.+.|+. +++++++.|..|++|++++..++..+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~----------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNY----------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecceeEEEEEecchhhhccce----------------eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 999999999999988765443 2688899999999965 68999999999999999999998877
Q ss_pred e---ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC--------------C-------ceee---EeccccCc
Q 011179 266 L---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------G-------KPAG---VLMGHLEG 318 (491)
Q Consensus 266 ~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~-------~~~~---~~~~~~~~ 318 (491)
- +|.+.|.++.|+ .++.+|++++.|.++++|++...+.. . .... .-.-|...
T Consensus 175 GG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred cccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 5 799999999997 88999999999999999998721100 0 0000 11236666
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|-|+.|- |+++++-+.++.|..|............. ++. .....+..++-.......+
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vk--------------p~e------s~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVK--------------PPE------SATTILGEFDYPMCDIWFI 311 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccC--------------CCc------cceeeeeEeccCccceEEE
Confidence 6677665 56899999999999998743221100000 000 0012233333333223334
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcEE--Eeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.. +.|-++.||.|...|.|++||++..++. .++. .....|+..+|+.|+.+|+..++|++|.-||.-
T Consensus 312 rf~----~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RFA----FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEe----ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 443 4457899999999999999999887653 2222 124679999999999999999999999999853
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=201.33 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=191.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccc-ccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~d 248 (491)
...+|...++-..|+.++. ..+.|+.+..........+.. .... --..+..+.|.. +.++||+++..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn----------~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQN----------KFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccc----------eeeehhhcccccchhhhheeecCC
Confidence 4666777788877887764 467777765443322222110 0000 111456678875 56789999999
Q ss_pred CeEEEEECCC---CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 249 DCIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 249 g~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
|.|.+||+.. .+.+..+..|...++++.|++...++|++|+.||+|++||++ ..+....+.+..+.|..+.|+
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeec
Confidence 9999999987 666677889999999999998889999999999999999999 667777788889999999999
Q ss_pred CC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecc
Q 011179 326 GD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 326 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
|. +..|+++...|.+.+||+|... +....+..|... .++.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------r~~~k~~AH~Gp------V~c~ 226 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPD---------------------------------RCEKKLTAHNGP------VLCL 226 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCch---------------------------------hHHHHhhcccCc------eEEE
Confidence 94 6789999999999999999743 455556666632 3344
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCcE--EEeeccCCCCeeeeEecCCCC-eEEEEe--CCCcEEEEcCCCCCCCC
Q 011179 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSS--WDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 405 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~-~l~s~~--~Dg~v~iw~~~~~~~~~ 476 (491)
.|+|++.+||+|+.|+.|+|||+.+++. +.++. ...+|..|.|-|+.+ .|++++ .|-.|+|||+..+--+.
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 6778999999999999999999976543 34443 357899999999988 677664 57889999998765443
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.9e-22 Score=181.01 Aligned_cols=257 Identities=18% Similarity=0.171 Sum_probs=181.3
Q ss_pred CceEEEEEcCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCc
Q 011179 125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~i~~~~~s~dg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~ 202 (491)
..+.+++|+|+|+.+ ++++.++.|++||..+++...... .+. .+..++|+|+++.++++ +.++.|++||+.+++
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 346789999999976 566788999999999886554332 122 35678999999977655 458999999998765
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
....... ...+.+++|+|++++++++..++ .+.+||..+++....+. ....+.+++|+ ++
T Consensus 107 ~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s-~d 167 (300)
T TIGR03866 107 VLAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT-AD 167 (300)
T ss_pred EEeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC-CC
Confidence 4332211 11467799999999999988765 57788998887765543 23456789997 67
Q ss_pred CCEEE-EEeCCCeEEEEecccccCCCceeeEecccc-----C--cEEEEEEcCCCCEEEE-eeCCCcEEEEeCCCCCCcc
Q 011179 282 GHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----E--GITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 282 ~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~ 352 (491)
+++|+ ++..++.|++||++ ..+.+..+..+. . ....++|+|+++++++ .+.++.+.+||+++..
T Consensus 168 g~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--- 240 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE--- 240 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---
Confidence 77775 44569999999997 444444433221 1 2346889999998654 4556789999997632
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEECCCCc
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 431 (491)
.+..+... ...+++.|+|+|++|++++ .+|.|.+||+.+++
T Consensus 241 -------------------------------~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 241 -------------------------------VLDYLLVG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -------------------------------EEEEEEeC-------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 22222111 1123456888999998874 58999999999999
Q ss_pred EEEeeccCCCCeeeeEecC
Q 011179 432 QVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~sp 450 (491)
++..++.. ...+.++++|
T Consensus 283 ~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 283 VIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEEcc-cccceeEeCC
Confidence 99999754 5558888875
No 149
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=176.82 Aligned_cols=296 Identities=17% Similarity=0.158 Sum_probs=223.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEECCCCCeEEEEECC
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (491)
...+.+|.+.|+++.||.++++||+|+.|..+++|+++.- +.+. ...+.|+..|.|++|....+.+.+|..+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCc
Confidence 3456899999999999999999999999999999998642 2222 2345677899999999999999999999
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-ee--EEEec
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILA 267 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~ 267 (491)
++|.+.|+++.+.+-+.... ...+.|+.+..+|..+.|++.+.++.|.+||..... .. ..+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ceeEeeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999988765554322 133479999999998999999999999999997655 21 12223
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE------eccccCcEEEEEEcCCCCEEEEeeCCCcEE
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV------LMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 341 (491)
.......+.|+|....+|++.+..+-+-+||.+... .++.. +......-.++.|+|+|..|++--....-.
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeecccc---chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 445678889998889999999999999999998322 22211 111112235678999999998877776777
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe----CCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
+||+.+.. -.+..+. |.....++..++|. +..-+++|+
T Consensus 270 ~~D~~S~R---------------------------------~~V~k~D~N~~GY~N~~T~KS~~F~-----~D~~v~tGS 311 (609)
T KOG4227|consen 270 YFDFISQR---------------------------------CFVLKSDHNPNGYCNIKTIKSMTFI-----DDYTVATGS 311 (609)
T ss_pred Eeeeeccc---------------------------------ceeEeccCCCCcceeeeeeeeeeee-----cceeeeccC
Confidence 88886622 1122222 22234455555554 345599999
Q ss_pred cCCeEEEEECCCC-----------------------cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 418 HDSCVYVYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 418 ~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+-.|++|.+... +.+..+++|.+-++.+.|+|...+|++.+....+++|.-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 9999999987521 234567899999999999999999999999999999974
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=182.15 Aligned_cols=193 Identities=21% Similarity=0.247 Sum_probs=157.7
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEE------------------EeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEE
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQK------------------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw 196 (491)
|+++|.|+.|..|.|||++--..+.. -....+|...|.+++|+..- ..||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999863211111 11223677788899998764 678899999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|+.++++..... .|...|.++.|+| ...+|++|+.|++|.+.|.+........-...+.|-.+
T Consensus 272 D~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 272 DVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred EcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 999999866554 3566999999999 56789999999999999998543333333557889999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 347 (491)
+|.|.....+++++.||+|+-+|+|. .++++..+..|.++|.++++++. ..++++++.|+.+++|++..
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~---~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRN---PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCC---CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 99988889999999999999999993 45899999999999999999875 44788999999999999976
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=176.58 Aligned_cols=304 Identities=15% Similarity=0.176 Sum_probs=208.7
Q ss_pred eEEEEEcCCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEeecCCCceeEEEEEECCC-------CCeEEEEECCCeE
Q 011179 127 AYVSQFSADGSLFVAGFQAS-----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIV 193 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg-----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~i 193 (491)
.-.+.+-|+.++++++-.+. .|+||+-... ..++.-..... ...|++|... |+++|.|+.|..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpa---fPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPA---FPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccC---cchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 44566778777777664432 2556654432 22222222222 3466777532 5799999999999
Q ss_pred EEEECCCCccc-ccccccc----ccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEec
Q 011179 194 HIVDVGSGTME-SLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 194 ~iw~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
.|||+.=-... ....+.. .............+|+..|.+++|+..- +.||+|+.|.+|.+||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 99998632211 1111110 0000111223345799999999998754 5789999999999999999999999999
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCC
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 346 (491)
|.+.|.++.|+|..+..|++|+.|++|.+.|.|.....+. .-.-.+.|-.++|.|.. ..++++..||+|+-+|+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~----~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK----EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc----eEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 9999999999988899999999999999999984221211 11235778899998865 467778899999999999
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 426 (491)
... +++.+++.|......+ .++.. ...++++++.|+.|.+|+
T Consensus 361 ~~~---------------------------------~~vwt~~AHd~~ISgl--~~n~~---~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 361 NPG---------------------------------KPVWTLKAHDDEISGL--SVNIQ---TPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCC---------------------------------CceeEEEeccCCcceE--EecCC---CCcceeeccccceEEEEe
Confidence 853 6778888887543333 33322 356899999999999999
Q ss_pred CCCCcE--EEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCC
Q 011179 427 LVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 427 ~~~~~~--~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+..-.. +..-...-+...|.++.|+-. .|+.|+..+.++|||+......
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 865433 211111124466778888776 7888888889999999876543
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.6e-23 Score=174.24 Aligned_cols=292 Identities=16% Similarity=0.209 Sum_probs=201.1
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
+.+|++..+|.|++||..++..+... .++...++.+.|.. ....+.+++.||+|++||+++......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 57899999999999999998666654 44445677888876 3567889999999999999887665544433211
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCee-eEEE-eccCCCeeEEEEecCCCCEEEEE
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~~l~s~ 288 (491)
..+..+++.+..++.+++|.. +-.|.+||++..+. +..+ ..|...|++++|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 125677777777888888763 67799999988776 4444 37999999999999999999999
Q ss_pred eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeee
Q 011179 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 289 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
|.||.|.+||+...+ ....+.....|...|.++.|..++ +.|.+-+..++..+|++...............
T Consensus 185 SvDGLvnlfD~~~d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~------- 256 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS------- 256 (376)
T ss_pred cccceEEeeecCCCc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch-------
Confidence 999999999997443 223344444577889999998876 45888888999999999886533322110000
Q ss_pred ecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECC---C---CcEEEeecc-C
Q 011179 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLV---S---GEQVAALKY-H 439 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-h 439 (491)
............++.+.. ..+....+.++. -|...++-+. + .+.+..+++ |
T Consensus 257 -----------------~~d~r~~~~~dY~I~~~~----~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~ 315 (376)
T KOG1188|consen 257 -----------------ADDLRKEDNCDYVINEHS----PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH 315 (376)
T ss_pred -----------------hhhHHhhhhhhheeeccc----CCCcceEEEeccccCceeEEEeeecccccccCccccccCCc
Confidence 000000000011111110 113344444444 4555555433 2 344566665 7
Q ss_pred CCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 440 ~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
..-|+++.|...+.++.|||.||.+.+|..+...
T Consensus 316 ~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~ 349 (376)
T KOG1188|consen 316 EEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDAT 349 (376)
T ss_pred HHHHHHHhhhcccceeeccCCCceEEEEecCCcc
Confidence 7889999999888999999999999999965443
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=2e-23 Score=170.28 Aligned_cols=299 Identities=16% Similarity=0.201 Sum_probs=205.9
Q ss_pred CCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
+|..+.+.++.|.+.|+++.|..+++ |.+|..-|.|.+|++++......+. ..+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCc
Confidence 35667788899999999999998886 8899999999999999874443322 245568999998887 5688889999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-----CCC----EEEEEeCCC-eEEEEECCCCee
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGR----ELVAGSSDD-CIYVYDLEANKL 261 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~~~----~l~~~~~dg-~i~vwd~~~~~~ 261 (491)
.+.+|++..+....+..+ .+.++.|.+ +++ .++.-+... .+.+-|......
T Consensus 78 ~L~lw~ia~s~~i~i~Si-------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI-------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred eEEEEEccCcceEEEeee-------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 999999987665444332 333444432 111 111111100 022223222222
Q ss_pred eEEEe----ccCCCeeEEEEecCCC--CEEEEEeCCCeEEEEeccccc------CCCceeeEeccccCcEEEEEEcCCCC
Q 011179 262 SLRIL----AHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 262 ~~~~~----~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
+.... +..+.+.|..+-..++ -++++|.++|.+.+||+.... ...+.......|..+|.++.+.+...
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 22111 3345677776532333 256788899999999997321 11234445567999999999988777
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.=++|+.+..+..|.+......... ....+++... .....+-||
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lknpG--------v~gvrIRpD 262 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKNPG--------VSGVRIRPD 262 (323)
T ss_pred CCcCCCccccceeeeeccccCcccc----------------------------cceEEecCCC--------ccceEEccC
Confidence 7788888889999998753211111 1111111111 111134569
Q ss_pred CcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
++++|+++.|+.|+||..++..++..++.|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999999986
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2.9e-22 Score=182.44 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCccccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeE--E-EEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--I-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~--~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
..-.+.+|...|+.+.|+|- ..+||+|+.|..|+||.+..|-. + .......+.+-.|.++.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 34567899999999999994 45899999999999999986511 1 11112233345789999999887777777889
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
.++|||+.+++.... ..+|...|.++.|+.||+.|++.+.|..|+|||-+.
T Consensus 151 ~v~i~D~stqk~~~e----------------l~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVE----------------LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccCceeec----------------ccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999998775322 236788999999999999999999999999999864
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-22 Score=175.46 Aligned_cols=263 Identities=15% Similarity=0.172 Sum_probs=196.8
Q ss_pred ceEEEEEcCCCCEEEE--EEcCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 126 RAYVSQFSADGSLFVA--GFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~--~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.+..+.|+.... |++ .+.|..|++|.-.... .+.......+. .-.|++......|+++|+..+.|+|||++...
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 489999998765 443 4467889999765420 12222222222 34455555556899999999999999998554
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~ 281 (491)
+.+.. .+|...|+++.++....+||+++..|.|.|..+.++.....+... ...|.-+.|++..
T Consensus 113 ~hr~l----------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 113 IHRFL----------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred Hhhhc----------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence 43322 257779999999999999999999999999999999887777644 3455689999777
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
..+|.+++.+|.|.+||+. ...+. .-...|..+...|+|+|. ..+|++.+.|..|.+||++...
T Consensus 177 r~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---------- 242 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---------- 242 (673)
T ss_pred ceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc----------
Confidence 7888999999999999997 33333 344679999999999995 5678899999999999998632
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEeecc
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKY 438 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~ 438 (491)
....+...... ...+|+++|.+|++|+..|.|+.||++.. .++..+..
T Consensus 243 ------------------------s~~~l~y~~Pl-------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 243 ------------------------STDRLTYSHPL-------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ------------------------ccceeeecCCc-------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 11111111111 22367889999999999999999999864 57888889
Q ss_pred CCCCeeeeEecCCC
Q 011179 439 HTSPVRDCSWHPSQ 452 (491)
Q Consensus 439 h~~~v~~~~~sp~~ 452 (491)
|...|++++|-|..
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 99999999998764
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=9.6e-22 Score=180.09 Aligned_cols=277 Identities=16% Similarity=0.147 Sum_probs=209.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
.|+.++|-|||..|+.+. +..+.+||.+.|..++ ..++|...|++++|+.||+.+++|+.|..|.+|+-+-.....
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 799999999999888774 4579999999995554 557899999999999999999999999999999865332211
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 285 (491)
..|...|.|+.|+|-...|++++-.. .-+|..+.....+ . .....+.+++|. .+|+++
T Consensus 90 ------------------YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K-~-kss~R~~~CsWt-nDGqyl 147 (1081)
T KOG1538|consen 90 ------------------YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK-H-KSSSRIICCSWT-NDGQYL 147 (1081)
T ss_pred ------------------eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHh-h-hhheeEEEeeec-CCCcEE
Confidence 13777999999999999999987553 6788776544321 1 234578899997 899999
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-----CEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+.|-.+|+|.+-+.... ....+..-.+..++|.+++|+|+. ..+++.....++.++.+....
T Consensus 148 alG~~nGTIsiRNk~gE--ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~----------- 214 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNGE--EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ----------- 214 (1081)
T ss_pred EEeccCceEEeecCCCC--cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----------
Confidence 99999999999865311 222233334578899999999963 466777777777777765411
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
+-.-+ ++.--..+..+-++|.|++.|+.|+.+.+|- +.|-.+.++....
T Consensus 215 ------------------------Igk~r------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 215 ------------------------IGKDR------ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD 263 (1081)
T ss_pred ------------------------ecccc------cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence 11000 0000011224667999999999999999997 4677888887778
Q ss_pred CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
..|+.++..|++++++.|+.||+|..|++...
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 89999999999999999999999999997543
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=5.4e-22 Score=175.61 Aligned_cols=275 Identities=15% Similarity=0.232 Sum_probs=196.3
Q ss_pred cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE--ECCCeEEEEECCCCcccccccccccccccccccc
Q 011179 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 144 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
....+++||+............... ..+.++.|+.... |+++ +.|..+++|.-... ...+..+... .
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~-~------- 78 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKL-T------- 78 (673)
T ss_pred cCCceEEeecccccCccccccCCCC-Ccceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeecc-c-------
Confidence 3346999998765433333322222 2499999987664 5444 45778899874432 2112111110 0
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccc
Q 011179 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 222 ~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 301 (491)
+ ..-.|++......|+++|+..+.|+|||++...+.+.+.+|...|+++.|+ ....+||+++..|.|.|..+.
T Consensus 79 ---g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~- 151 (673)
T KOG4378|consen 79 ---G--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK- 151 (673)
T ss_pred ---c--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc-
Confidence 0 023445555555899999999999999999877888888999999999998 788899999999999999987
Q ss_pred ccCCCceeeEeccccC-cEEEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 302 LNVKGKPAGVLMGHLE-GITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+.....+....+ .|.-+.|+|..++ |.+++.+|.|.+||+..+....
T Consensus 152 ---t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~--------------------------- 201 (673)
T KOG4378|consen 152 ---TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF--------------------------- 201 (673)
T ss_pred ---cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc---------------------------
Confidence 4444445544433 4568899998775 4578889999999998743211
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEe
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~ 459 (491)
.-.+.|. .+...++|+|. +..+|++.+.|..|++||+.+.+....+. ...+...++|+++|.+|+.|.
T Consensus 202 ------~~~~~Hs--AP~~gicfsps---ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 202 ------HASEAHS--APCRGICFSPS---NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ------chhhhcc--CCcCcceecCC---ccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec
Confidence 1122333 22334455554 67788999999999999998877776665 456899999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCC
Q 011179 460 WDGDVVRWEFPGNGEAAPP 478 (491)
Q Consensus 460 ~Dg~v~iw~~~~~~~~~~~ 478 (491)
..|.|..||++..+.+...
T Consensus 270 s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CCceEEEEecccCCCCceE
Confidence 9999999999987765443
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2e-21 Score=160.65 Aligned_cols=285 Identities=18% Similarity=0.261 Sum_probs=199.3
Q ss_pred cccCCCCceEEEEEcCCC-CEEEEEEcC-------CeEEEEECCCCeEE------EEEe-ecCCCceeEEEEEECCCCCe
Q 011179 119 PVDQTTSRAYVSQFSADG-SLFVAGFQA-------SQIRIYDVERGWKI------QKDI-LAKSLRWTVTDTSLSPDQRH 183 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg-~~la~~~~d-------g~i~iwd~~~~~~~------~~~~-~~~~~~~~v~~~~~sp~~~~ 183 (491)
.+..|.+.|..++-+|-. +.|+++..+ -.+.||.+...... .... ....+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 456778999999999954 566666542 24789998764211 1111 11133347999999999998
Q ss_pred EEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee
Q 011179 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 184 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
+++.. |+.|.+|+++.+... ...+.. ....+|....++-+|+| |++.+++. .|+++..||+++.++
T Consensus 138 lasm~-dn~i~l~~l~ess~~-vaev~s---------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKI-VAEVLS---------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK 205 (370)
T ss_pred eEEec-cCceEEEEcccCcch-heeecc---------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh
Confidence 88776 889999999876652 111111 11123455788899999 78777765 588999999999887
Q ss_pred eEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCCCc
Q 011179 262 SLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 339 (491)
Q Consensus 262 ~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~ 339 (491)
...+. .|...|..+.|+|....+|++|+.||.|++||.| ....++..+.+|...|.++.|+|. .++|++++.|..
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 66665 6888999999997778899999999999999998 456788999999999999999995 467789999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 419 (491)
|.+|............... ......++.. .
T Consensus 283 V~Lsca~svSSE~qi~~~~-------------------------dese~e~~ds-------------------------e 312 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFED-------------------------DESESEDEDS-------------------------E 312 (370)
T ss_pred eEEEecccccccccccccc-------------------------ccccCcchhh-------------------------H
Confidence 9999876633222111000 0000000000 0
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~ 471 (491)
-.++ -+ ....+.++..|...|.+++||.-.+ .+|+-+.||.+.|=+++.
T Consensus 313 er~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 313 ERVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred Hhcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0010 01 1123456678999999999998777 778889999999877653
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=163.09 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=157.3
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--E--EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEE
Q 011179 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--L--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (491)
Q Consensus 222 ~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~--~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 297 (491)
...+|...|++++|+.||++|++++.|+.|++|+++..... + +..-.-+..+.+.|.|+...++++.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 34589999999999999999999999999999999764321 1 1111123568899986666777777778899999
Q ss_pred ecccccCCCce---------eeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeee
Q 011179 298 DRRCLNVKGKP---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 298 d~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
.+.... .+.. ..--..|.-.+..+-...++.+|++++.|..|.+|+++.
T Consensus 161 k~~K~~-dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG--------------------- 218 (420)
T KOG2096|consen 161 KLVKKT-DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG--------------------- 218 (420)
T ss_pred Eeeecc-cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC---------------------
Confidence 875221 1111 111223566677777888899999999999999999984
Q ss_pred cCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC---CC-----cEEEeeccCC
Q 011179 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV---SG-----EQVAALKYHT 440 (491)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~h~ 440 (491)
+.+..+...... .+..+.||+|++|++++..-.|.+|.+- .| ..+..+++|.
T Consensus 219 --------------q~L~~idtnq~~------n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 219 --------------QLLQSIDTNQSS------NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred --------------ceeeeecccccc------ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 444444433311 1223688899999999998899999863 22 3456788999
Q ss_pred CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
..|..++|+|+...++|.+.||+++|||.+-.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 99999999999999999999999999998654
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.7e-22 Score=196.29 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=197.1
Q ss_pred CCCCceEEEEEcCCCCE----EEEEEcCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCeE
Q 011179 122 QTTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIV 193 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~----la~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i 193 (491)
.-..+-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+. .||+|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 34667899999998876 88899999999999876 444445556678899999999999775 99999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS-- 270 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-- 270 (491)
.|||+..-+...... . ..-...|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+
T Consensus 142 ~iWDlnn~~tP~~~~--~------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPG--S------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred EEeccCCcCCCCCCC--C------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 999998744322221 0 012237999999974 45788899999999999999988887776554
Q ss_pred CeeEEEEecCCCCEEEEEeCCC---eEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 346 (491)
.+..++|+|.+...|++++.|. .|.+||+| ....+++.+.+|..+|.++.|.+.+ ++|++++.|+.|.+|+..
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 5778999977778888887654 69999998 3567788889999999999999966 889999999999999999
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd 426 (491)
+.+ .+..+.... .......|++. +...+++++.||.|-||.
T Consensus 285 tgE----------------------------------vl~~~p~~~--nW~fdv~w~pr---~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 285 TGE----------------------------------VLGELPAQG--NWCFDVQWCPR---NPSVMAAASFDGKISIYS 325 (1049)
T ss_pred Cce----------------------------------EeeecCCCC--cceeeeeecCC---Ccchhhhheeccceeeee
Confidence 843 333333221 23334445554 455889999999999999
Q ss_pred CCCCc
Q 011179 427 LVSGE 431 (491)
Q Consensus 427 ~~~~~ 431 (491)
+..+.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87654
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=169.42 Aligned_cols=224 Identities=14% Similarity=0.237 Sum_probs=162.6
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeE
Q 011179 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i 193 (491)
....|.+|.+-|+|+.|+.||.+||+|+.|-.+.|||....+.+.. ...+|...|.++.|.|. .+.+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3567899999999999999999999999999999999986555444 45688889999999994 5788999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee----------
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS---------- 262 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~---------- 262 (491)
+++|+...+.... ..+.......-..|...|.-++-.|++ ..+.+++.||+|+-+|++.....
T Consensus 120 ~lfdl~~~~~~~~------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEEeccccccccc------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 9999975322111 111111111223467788899999988 78999999999999999863211
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc----CC----------CceeeEec-ccc-----------
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VK----------GKPAGVLM-GHL----------- 316 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~----------~~~~~~~~-~~~----------- 316 (491)
..+...--...|+..+|.+..+|++|+.|-..++||.+... .. ..++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11112223568899998899999999999999999954110 00 01122221 121
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
..++.+.|+|+|..|++.-....|+++|+..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256788999999888777777899999876
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1e-20 Score=181.94 Aligned_cols=310 Identities=20% Similarity=0.226 Sum_probs=217.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEEECC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~ 199 (491)
+...+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3344567889999999999998778999999999977776655555566799988865 45789999999999999843
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEe
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG 278 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~ 278 (491)
..... ..++...-.++.-... +-.+.=.-+.|.....+|++++.-..|+|||.....++..+. +....|+++.-.
T Consensus 1142 ~~~~~-~~eLVTaw~~Ls~~~~---~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1142 ADKWK-KPELVTAWSSLSDQLP---GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred ccccC-CceeEEeeccccccCc---cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 22110 0011100011100000 000011346787766678887778899999999888777665 445677888776
Q ss_pred cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc--EEEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCCccccc
Q 011179 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
...++.|++|..||.|++||.|... ....+.....|+.. |..+.+.++|-- |++|+.+|.|++||++.....
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e---- 1292 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE---- 1292 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc----
Confidence 5678999999999999999998654 33567788888887 999999887654 999999999999999984211
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
...+...|..... ...++...++...+|+|+. +.|.||++ .|+.+..
T Consensus 1293 ----------------------------~~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~ 1339 (1387)
T KOG1517|consen 1293 ----------------------------TFLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNI 1339 (1387)
T ss_pred ----------------------------ccceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEec-Chhhhcc
Confidence 1111111110000 0112234447789999998 99999998 5655555
Q ss_pred ecc-------CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 436 LKY-------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 436 ~~~-------h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++. ..+.+.+++|+|-..+||+|+.|.+|.||..+.+.
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 542 23578999999999999999999999999977654
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=5.9e-21 Score=174.17 Aligned_cols=309 Identities=19% Similarity=0.218 Sum_probs=202.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw 196 (491)
.....|.+.|+.+.|-|....|++++.|.++++||+.++...... ...+|.+.|.+++|.|+. ..+++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 344689999999999996678999999999999999988655543 567899999999999976 567889999999999
Q ss_pred ECCCCccccccc----ccccccc-------ccccccCCCCceecEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCee
Q 011179 197 DVGSGTMESLAN----VTEIHDG-------LDFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANKL 261 (491)
Q Consensus 197 ~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~h~~~i~~---~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~ 261 (491)
|+.-........ +...+.+ +.-.......+...|.+ +.+..|...||+++. |+.|+|||+.....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 986443211111 1111111 00011111234444555 555667788998887 99999999987654
Q ss_pred eEEE--------ecc---CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE--EEEEcCCC
Q 011179 262 SLRI--------LAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT--FIDSRGDG 328 (491)
Q Consensus 262 ~~~~--------~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~ 328 (491)
.... ..| .-.+.++.. +..|.+|++.+.|+.|++|++... ...++..+.++...-. .-..+|++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence 3322 122 234666666 366777777777999999999854 3344555554433211 22368999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC
Q 011179 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
.++++|+.|...++|.+.+.. .....+.+|....+ ...|.+. +
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e---------------------------------~~~~~l~Ght~eVt--~V~w~pS--~ 372 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPE---------------------------------APPALLLGHTREVT--TVRWLPS--A 372 (720)
T ss_pred ceEeccCCCcceeeeeecCcc---------------------------------CChhhhhCcceEEE--EEeeccc--c
Confidence 999999999999999998854 34455666764333 3334332 2
Q ss_pred CCcEEEEEecCCeEEEEECCCCcE--------------EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQ--------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
... +++++.|..++||++..+-. ...+++|.-.+..+.++-.+.+.... -+..++|...
T Consensus 373 ~t~-v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP 445 (720)
T KOG0321|consen 373 TTP-VATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP 445 (720)
T ss_pred CCC-ceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc
Confidence 344 66669999999999965421 22345666556666655444333322 3445555543
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=8.6e-20 Score=151.23 Aligned_cols=290 Identities=17% Similarity=0.241 Sum_probs=200.6
Q ss_pred CceEEEEEcC--C-CCEEEEEEc----CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEECCCCC-----eEEEEECC
Q 011179 125 SRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVYASMS 190 (491)
Q Consensus 125 ~~i~~~~~s~--d-g~~la~~~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~d 190 (491)
-+++++.||. + +.+||.|+. .+.|.|-.++ +++.+.. ....|..+++.+.|.|+.. +||+. +
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~ 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATS--S 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhcc--c
Confidence 3577888883 3 347888874 4567666554 3433332 2246778999999999873 55554 4
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---eeEEEe
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLRIL 266 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~ 266 (491)
..+++|.+...+...... ..+.......+..+++++.|+. +-++|.+.+-|.+..|||++++. ....+.
T Consensus 121 D~LRlWri~~ee~~~~~~-------~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQ-------SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred CeEEEEeccCcCCceehh-------hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 589999987432111110 0111222334666999999997 77889999999999999999873 356677
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCC-CcEEEEe
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD-QAIKLWD 344 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d-g~i~iwd 344 (491)
.|...|..++|.....+.|++.+.||.+|+||+|..+ ....+..-.....+...++|++. -+++|+-..| ..|.|.|
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 9999999999986556899999999999999999543 22233322233567888999874 5677776665 4599999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 424 (491)
+|... .++..+++|.. .+....|.|. ....|++++.|..+.+
T Consensus 273 iR~P~---------------------------------tpva~L~~H~a--~VNgIaWaPh---S~~hictaGDD~qali 314 (364)
T KOG0290|consen 273 IRVPC---------------------------------TPVARLRNHQA--SVNGIAWAPH---SSSHICTAGDDCQALI 314 (364)
T ss_pred ecCCC---------------------------------cceehhhcCcc--cccceEecCC---CCceeeecCCcceEEE
Confidence 99753 56777888874 3444555554 5678999999999999
Q ss_pred EECCCCc------EEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEE
Q 011179 425 YDLVSGE------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVR 466 (491)
Q Consensus 425 wd~~~~~------~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~i 466 (491)
||+.+.- ++..+. -.+.|+.+.|++... .|+.+. +..+.+
T Consensus 315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 9997532 222333 467899999997554 666664 444444
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=172.98 Aligned_cols=318 Identities=19% Similarity=0.259 Sum_probs=238.2
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (491)
...|..|.+.|..+.|...|..|++|+.|..|.+||...+... +....+|...|....|-|. .+.|++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4678899999999999999999999999999999999987443 3455678778888889884 47899999999999
Q ss_pred EEECCCC-ccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe---ccC
Q 011179 195 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AHT 269 (491)
Q Consensus 195 iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~ 269 (491)
+=.+... .+..... ...|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.....+. .+.
T Consensus 213 ~s~i~~t~~~e~t~r--------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 213 VSEILETGYVENTKR--------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred eeeeccccceeccee--------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 8776433 2221211 23477789999999865 468899999999999998876543332 333
Q ss_pred C---CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC--CceeeEecc------ccCcEEEEEEcCCCCEEEEeeCCC
Q 011179 270 S---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMG------HLEGITFIDSRGDGRYLISNGKDQ 338 (491)
Q Consensus 270 ~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~------~~~~i~~~~~~~~~~~l~s~~~dg 338 (491)
. ....++..|.+.+.+++|+.|..+++||.+..... ...+..+.. ..-.|++++|+.++.-|++...|-
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence 3 56788888777889999999999999998743221 112222222 234699999998888888888888
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE-EEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV-ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
.|+++.-........... .+..+.+ +.|+||....++..+- .|-|...|+++|+
T Consensus 359 ~IYLF~~~~~~G~~p~~~----------------------s~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSGS 413 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSEPDPS----------------------SPREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSGS 413 (559)
T ss_pred ceEEeccccccCCCCCCC----------------------cchhhccchhhcccccccccceee---eccCccceEEecC
Confidence 899994332111000000 0001223 3489999888865554 3667899999999
Q ss_pred cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.-|.|.||+-.+++.+..+++...-|+||.=+|--+.||++|-|..|+||-....+..
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999888877779999999999999999999999999997555443
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-19 Score=144.25 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=192.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..|+.-+++|.+++|++|..+|.|-+..+.+- .....+.....|.++|+.++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35677789999999999999999999988642 1112233447899999999998 45666665 59999998
Q ss_pred CCCCcc----ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 198 VGSGTM----ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 198 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
...... +........... +.-.--.|+++...|..+-++.++.|+.++-||+++|+..+.+++|++.|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~-------~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQV-------DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred ehhhhhhccchhhhhhcCcccc-------CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 754322 111111110000 000111689999999777777777999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc---------cc-CcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------HL-EGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~-~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
++.-- .....+++|+.||++|+||.+ +.+.+..+.. |. ..|-+++.+ ..++++|+ ...+.+|
T Consensus 161 ~vv~R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 161 SVVGR-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLW 232 (325)
T ss_pred eeeec-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEE
Confidence 99984 455678899999999999998 6665555432 22 235666654 44777665 4569999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 423 (491)
.++..+. ..+..+.++..... | ....+++++..+.|.
T Consensus 233 hLrsse~--------------------------------t~vfpipa~v~~v~-----F------~~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 233 HLRSSES--------------------------------TCVFPIPARVHLVD-----F------VDDCVLIGGEGNHVQ 269 (325)
T ss_pred eccCCCc--------------------------------eEEEecccceeEee-----e------ecceEEEecccccee
Confidence 9998543 22222333322111 1 456788888888899
Q ss_pred EEECCCCcEEEeeccCCCCeeeeEecCCC-CeEEEEeCCCcEEEEc
Q 011179 424 VYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWE 468 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~v~iw~ 468 (491)
-|.+ +|..-..+.......+...|+..- ++|-.++....+.|+.
T Consensus 270 ~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 270 SYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 9987 566666666555566677776443 3555567777777763
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=9.6e-21 Score=159.48 Aligned_cols=252 Identities=19% Similarity=0.244 Sum_probs=188.1
Q ss_pred CCCCceEEEEEcCCC----CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEE
Q 011179 122 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg----~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw 196 (491)
.|...-+.++|+-|- .+||+|+.-|.|+|.|+.+++.... ..+|.+.|+.+.+.|+. +++++++.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~---~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN---YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---eeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 578889999998754 3799999999999999998855443 35777899999999976 788899999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--------------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------- 262 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------------- 262 (491)
++++..++.++.-. .||.+.|.++.|+++|.+|++++.|.+|.+|++...+..
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999887766532 478889999999999999999999999999999833210
Q ss_pred --------E------EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc----------CCCceeeEeccccCc
Q 011179 263 --------L------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------VKGKPAGVLMGHLEG 318 (491)
Q Consensus 263 --------~------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~ 318 (491)
. +-.-|...|-|+.|. ++++++-+-++.|..|...... .....+..+.-....
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 0 112477788888886 6899999999999999872111 011223333334445
Q ss_pred EEEEE--EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 319 ITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 319 i~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
|+.+. |.|-++.||.|...|.|.+||++...... ..++..+....+
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~--------------------------------~ttl~~s~~~~t 355 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK--------------------------------CTTLTHSKSGST 355 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc--------------------------------CceEEeccccce
Confidence 66655 46678899999999999999999854321 111211111122
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
+. ..+||.|+.+|+..+.|+.|.-||..
T Consensus 356 VR----Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 356 VR----QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ee----eeeecccCcEEEEEeCCCcEEEEEee
Confidence 22 22567799999999999999999954
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4e-18 Score=165.06 Aligned_cols=292 Identities=32% Similarity=0.503 Sum_probs=222.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEE-CCCCC-eEEEEEC-CCeEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 194 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~~~-d~~i~ 194 (491)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333322121 35666666 88887 5555444 89999
Q ss_pred EEECCC-CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCe
Q 011179 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
+|+... ....... ..|...|..++|+|+++.+++++. ++.+++|++..+..+..+..|...|
T Consensus 138 ~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTL----------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEE----------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 2221111 145668999999999998888886 9999999999988888888899999
Q ss_pred eEEEEecCCCC-EEEEEeCCCeEEEEecccccCCCceee-EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 273 ~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
.+++|+ +++. .+++++.|+.|++||.. ...... .+.+|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999998 6776 55555999999999876 556666 677888775 448999998999999999999999987431
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
.+..+.+|. ..+... .++|++..+++++.|+.+.+||..+.
T Consensus 276 ---------------------------------~~~~~~~~~--~~v~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 276 ---------------------------------LLRTLSGHS--SSVLSV----AFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ---------------------------------EEEEEecCC--ccEEEE----EECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 122223332 222222 45557788888988999999999888
Q ss_pred cEEEeec--cCCCCeeeeEecCCCCeEEEE-eCCCcEEEEcCCCCC
Q 011179 431 EQVAALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 473 (491)
Q Consensus 431 ~~~~~~~--~h~~~v~~~~~sp~~~~l~s~-~~Dg~v~iw~~~~~~ 473 (491)
....... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 8776665 788889999994342555555 688999999998776
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1e-19 Score=150.82 Aligned_cols=251 Identities=20% Similarity=0.331 Sum_probs=185.0
Q ss_pred eeEEEEEECC--C-CCeEEEEEC----CCeEEEEECC--CCccccccccccccccccccccCCCCceecEEEEEEcCCCC
Q 011179 170 WTVTDTSLSP--D-QRHLVYASM----SPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 170 ~~v~~~~~sp--~-~~~l~~~~~----d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~ 240 (491)
+.+.++.|+. + ..+|+.|+. .+.|.|..+. +++..... ...|..+++.+.|.|+..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a---------------~fd~~YP~tK~~wiPd~~ 109 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA---------------NFDHPYPVTKLMWIPDSK 109 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC---------------CCCCCCCccceEecCCcc
Confidence 4678888883 3 346777774 4566666554 23222211 124777999999999763
Q ss_pred -----EEEEEeCCCeEEEEECCCCeeeE----E-----EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 241 -----ELVAGSSDDCIYVYDLEANKLSL----R-----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 241 -----~l~~~~~dg~i~vwd~~~~~~~~----~-----~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
.||+. . ..+++|.+...+... . -..+..++++..|+.-+.++|.+++-|-++.|||++... .+
T Consensus 110 g~~pdlLATs-~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~~ 186 (364)
T KOG0290|consen 110 GVYPDLLATS-S-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-SG 186 (364)
T ss_pred ccCcchhhcc-c-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-cc
Confidence 34443 3 469999987422111 1 124668999999998899999999999999999998331 33
Q ss_pred ceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 307 KPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.....+.+|...|..++|...+ +.||+.+.||.+++||+|... ...
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le---------------------------------HST 233 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE---------------------------------HST 233 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc---------------------------------cce
Confidence 4566788999999999999854 478999999999999999854 333
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEEecC-CeEEEEECCC-CcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCC
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDG 462 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg 462 (491)
..++.......+.+..++.. |-+++|+-..| ..|.|.|++. ..++..+++|.+.|+.++|.|... .|+|+|+|.
T Consensus 234 IIYE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred EEecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 44444444455666666654 67888886665 4799999986 567899999999999999999765 999999999
Q ss_pred cEEEEcCCCCCC
Q 011179 463 DVVRWEFPGNGE 474 (491)
Q Consensus 463 ~v~iw~~~~~~~ 474 (491)
.+.+||+.....
T Consensus 311 qaliWDl~q~~~ 322 (364)
T KOG0290|consen 311 QALIWDLQQMPR 322 (364)
T ss_pred eEEEEecccccc
Confidence 999999987544
No 170
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.8e-20 Score=152.38 Aligned_cols=223 Identities=20% Similarity=0.318 Sum_probs=157.4
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEecCC-CCEEEEEeCCCeEEEEe
Q 011179 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd 298 (491)
.+|..-|.++.|.+-|+.+|+|+.|++|.|||.... .+....+.|.+.|..+.|.+|. |+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 467788999999999999999999999999997543 3566778999999999998654 89999999999999997
Q ss_pred cc--ccc---CCCceeeEeccccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCC
Q 011179 299 RR--CLN---VKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 299 ~~--~~~---~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
-. ..+ ........+......|+.+.|.|. |-.||+++.||.++||+.........-..... +..+..+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E-----i~~~~~p 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE-----IQNVIDP 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh-----hhhccCC
Confidence 52 111 123345567778889999999985 67899999999999999866332111100000 0000000
Q ss_pred CCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-----CeEEEEECCCC----cEEEeeccCCCC
Q 011179 372 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYHTSP 442 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~h~~~ 442 (491)
| ..+. .......|++.. -...+||+|+.+ +.++||....+ ..+.++.+|..+
T Consensus 165 p----------------~~~~--~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 165 P----------------GKNK--QPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred c----------------cccc--CcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 0 0000 011111222110 034678888876 57888876543 245677899999
Q ss_pred eeeeEecCCC----CeEEEEeCCCcEEEEcCCC
Q 011179 443 VRDCSWHPSQ----PMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 443 v~~~~~sp~~----~~l~s~~~Dg~v~iw~~~~ 471 (491)
|++++|.|+- .+||+++.|| |+||++..
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 9999999963 4899999999 99999985
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.7e-20 Score=162.60 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=181.7
Q ss_pred CCCceeEEEEEECCCC--CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEE
Q 011179 166 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL 242 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l 242 (491)
..+...|++++|+|.. +++|+|...|.|-+||+.+.+....... ....|..+|.++.|+| +...+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~------------~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY------------LFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE------------EeccCCccccceEecCCChhhe
Confidence 3455589999999965 5788888999999999963322111100 0125777999999999 45689
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
++.+.||+|++-|++....-..+. .....+..+.|+ .+...++.+..=|...+||++. .+.....+.-|...|+
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~---~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT---DGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec---CCccchhhhhhhcccc
Confidence 999999999999998875433232 244567778886 5556666777767999999993 3344556667888999
Q ss_pred EEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 321 FIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 321 ~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
+++++|-. .+||+++.|++.+|||++....... ++...-.|. ..+..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr--rsV~s 374 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR--RSVNS 374 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc--ceeee
Confidence 99999964 4689999999999999998654321 111122233 23334
Q ss_pred EEecccccCCCcEEEEEecCCeEEEEECC----CCcEEEeeccCCC------CeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLV----SGEQVAALKYHTS------PVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+ |||.+..|++.+.|..|+|||.. .-.+...+. |.. ......|.|+..++++|-.-..|-|+|-
T Consensus 375 Ay----FSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 375 AY----FSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eE----EcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 44 55566669999999999999983 233344443 221 3455789999999999999899999997
Q ss_pred CCCC
Q 011179 470 PGNG 473 (491)
Q Consensus 470 ~~~~ 473 (491)
..+.
T Consensus 450 ~~~q 453 (498)
T KOG4328|consen 450 NGGQ 453 (498)
T ss_pred CCCE
Confidence 7765
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.5e-20 Score=154.06 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=156.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCcee
Q 011179 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 230 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 309 (491)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+ ++|+.|++++.|..|.+||+. .+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~----~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLL----KGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec-CCCCEeeeecCCceeEEEecc----CCCce
Confidence 6789999999999999999999999999999888899999999999998 899999999999999999998 77777
Q ss_pred eEeccccCcEEEEEEcCCCCE-EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 310 GVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
+.+. ..++|+...|+|..+. .++.-.+..-.+-++..... .+...
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h---------------------------------~~Lp~ 146 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH---------------------------------SVLPK 146 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce---------------------------------eeccC
Confidence 7776 5689999999996543 33333333344444432110 00000
Q ss_pred eCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC-CCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
... .......-...|.+.|+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|..|+.|
T Consensus 147 d~d---~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 147 DDD---GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred CCc---cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 000 0000001111467789999999999999999999999999887555 789999999999999999999999999
Q ss_pred cCCC
Q 011179 468 EFPG 471 (491)
Q Consensus 468 ~~~~ 471 (491)
++..
T Consensus 224 e~~d 227 (405)
T KOG1273|consen 224 EISD 227 (405)
T ss_pred ehhh
Confidence 9873
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.7e-19 Score=155.57 Aligned_cols=207 Identities=18% Similarity=0.279 Sum_probs=161.7
Q ss_pred CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeE
Q 011179 223 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i 294 (491)
-.||+++|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|..++|+|.-.+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 458999999999999 6678999999999999999765 34667889999999999998888999999999999
Q ss_pred EEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
.+|++. ++..+..+. |.+.|+++.|+.||.+|++.+.|..|+|||.++.
T Consensus 157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-------------------------- 205 (472)
T KOG0303|consen 157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-------------------------- 205 (472)
T ss_pred EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC--------------------------
Confidence 999998 777777776 9999999999999999999999999999999983
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec---CCeEEEEECCCCcE---EEeeccCCCCeeeeEe
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQ---VAALKYHTSPVRDCSW 448 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~ 448 (491)
..+..-.+|...+.. +..|-. +|.++.+|.. +.++.+||..+-+. ...+. .++.|.---|
T Consensus 206 --------~~v~e~~~heG~k~~-Raifl~----~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy 271 (472)
T KOG0303|consen 206 --------TVVSEGVAHEGAKPA-RAIFLA----SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY 271 (472)
T ss_pred --------cEeeecccccCCCcc-eeEEec----cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence 444444455443332 222222 6775555533 67899999776543 33343 3445666668
Q ss_pred cCCCCeEEEE-eCCCcEEEEcCCCCCC
Q 011179 449 HPSQPMLVSS-SWDGDVVRWEFPGNGE 474 (491)
Q Consensus 449 sp~~~~l~s~-~~Dg~v~iw~~~~~~~ 474 (491)
.||..+|..+ -.|+.|+.|++.+...
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCc
Confidence 8888866554 4699999999988763
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=1.3e-18 Score=161.43 Aligned_cols=282 Identities=12% Similarity=0.150 Sum_probs=173.1
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCC-Ccccccccccccccccc
Q 011179 140 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGLD 217 (491)
Q Consensus 140 a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~ 217 (491)
++...++.|.+|++.+...+....... ..+....++++|++++|++++ .++.|.+|++.. +.........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-------
Confidence 344678999999997432222222221 123577889999999987765 478899999863 3322111111
Q ss_pred ccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe----eeEEEeccCCCeeEEEEecCCCCEEE-EEeCC
Q 011179 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIY-SGSDD 291 (491)
Q Consensus 218 ~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~d 291 (491)
.......++|+|++++|++++. ++.|.+|++.+.. .+..+ .+.....+++++ +++++++ +...+
T Consensus 78 --------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-p~g~~l~v~~~~~ 147 (330)
T PRK11028 78 --------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANID-PDNRTLWVPCLKE 147 (330)
T ss_pred --------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeC-CCCCEEEEeeCCC
Confidence 0113567999999998888764 7899999997432 22222 233456778897 6777665 55567
Q ss_pred CeEEEEecccccCCC-c--eeeEeccccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCcccccCCCccceeeeee
Q 011179 292 NLCKVWDRRCLNVKG-K--PAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 292 g~i~iwd~~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
+.|.+||+.....-. . ...... .......+.|+|+|++++++.. ++.|.+|++.......
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--------------- 211 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--------------- 211 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE---------------
Confidence 999999996311000 0 001111 1234568999999999988776 8999999997421000
Q ss_pred ecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCc----EEEeeccCCCC
Q 011179 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE----QVAALKYHTSP 442 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~----~~~~~~~h~~~ 442 (491)
..+..+.................++|++++++++.. ++.|.+|++.... .+..+.. ...
T Consensus 212 ---------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~ 275 (330)
T PRK11028 212 ---------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQ 275 (330)
T ss_pred ---------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-ccc
Confidence 011111110000000001112356789999999865 6899999986543 2222222 134
Q ss_pred eeeeEecCCCCeEEEEeC-CCcEEEEcCCC
Q 011179 443 VRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 471 (491)
Q Consensus 443 v~~~~~sp~~~~l~s~~~-Dg~v~iw~~~~ 471 (491)
...+.|+|||++|+++.. +++|.+|+++.
T Consensus 276 p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 276 PRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 568999999998887765 89999998864
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=5.5e-21 Score=179.34 Aligned_cols=295 Identities=15% Similarity=0.249 Sum_probs=218.7
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+|.+.|+|+.|...|.++++|+.|..++||.++++.++. ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4567999999999999999999999999999999999875554 4578889999999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE---Ee-ccCCCee
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---IL-AHTSDVN 273 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~-~h~~~v~ 273 (491)
+..+..+.+.. ||++.|++++|+|-. +.+.||++++||.+-...+.. +. .....+.
T Consensus 261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 99998766654 789999999999854 678899999999871111110 01 1234566
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
++.|. .++.-+++++.|+.-..|..... ..+...+..+..+.+- .+.+++-.+-.+++|++-++
T Consensus 321 s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---- 385 (1113)
T KOG0644|consen 321 SILFE-NNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---- 385 (1113)
T ss_pred eeecc-ccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecccc----
Confidence 67775 77888999999999998876521 1122222233333222 35566667778999998873
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
+......+|.....++.. .|. +.+...+++.||...|||+..|.+
T Consensus 386 ------------------------------~l~H~l~ghsd~~yvLd~--Hpf---n~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 386 ------------------------------QLLHNLMGHSDEVYVLDV--HPF---NPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ------------------------------hhhhhhcccccceeeeee--cCC---CcHhhhhccCCCceEeeecccCCc
Confidence 444455555544444432 222 556778899999999999999988
Q ss_pred EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCCcceeeeeeccC
Q 011179 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 491 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~~~~~~f~~ 491 (491)
+..+....+.+.+..||+||..++....-|.++|.....++. .++.+..+||+
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s------~k~ak~dqffl 483 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS------QKKAKYDQFFL 483 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc------ccccccceEee
Confidence 777654456788889999999999998889999998766543 23444455553
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=9.6e-20 Score=167.14 Aligned_cols=263 Identities=16% Similarity=0.199 Sum_probs=194.9
Q ss_pred CCccccccccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEE
Q 011179 96 RGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (491)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (491)
..-+-+++....+.+.-.....+++.+|++.|+|++|+.||+++|+|+.|..|.+|+-.-.. .....|...|.|+
T Consensus 25 sqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----~LkYSH~D~IQCM 99 (1081)
T KOG1538|consen 25 TQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----ILKYSHNDAIQCM 99 (1081)
T ss_pred ceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----eeeeccCCeeeEe
Confidence 33444555555566665666678999999999999999999999999999999999865321 2235677799999
Q ss_pred EECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011179 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 255 (491)
.|+|-...|++++- ...-+|..+.....+... ...+.+.+|..||++++.|-.+|+|.+-+
T Consensus 100 sFNP~~h~LasCsL-sdFglWS~~qK~V~K~ks------------------s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 100 SFNPITHQLASCSL-SDFGLWSPEQKSVSKHKS------------------SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ecCchHHHhhhcch-hhccccChhhhhHHhhhh------------------heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 99999999999875 346788876554432221 12788999999999999999999999987
Q ss_pred CCCCeeeEEE--eccCCCeeEEEEecCCC----CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC
Q 011179 256 LEANKLSLRI--LAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 256 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
-...+.+..- .+.+.+|.+++|+|..+ ..+++.....++.++.+ .++.+..-..-.-.-.|+.+-++|.
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccCCc
Confidence 5443332222 24678999999996543 57788888888888887 4555543333333456889999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
+++.|+.|+.+++|.-.. -.+-+... .-...|+.+..|+
T Consensus 236 y~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSWIWTVQAKPN 274 (1081)
T ss_pred EEEEccCCCceEEEeecC-----------------------------------eEEeeccc------cceeEEEEEEccC
Confidence 999999999999997543 11222211 1234466677889
Q ss_pred CcEEEEEecCCeEEEEECC
Q 011179 410 QKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~ 428 (491)
+++++.|+.||+|..|++.
T Consensus 275 sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CceEEEEEccCeeehhhhH
Confidence 9999999999999999875
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-18 Score=165.06 Aligned_cols=296 Identities=15% Similarity=0.143 Sum_probs=204.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
..|.-.++|.++||+++++|+|..||.|.+|.--. ...-......+=|...|++++|+++|.+|++|+..+.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45777799999999999999999999999997543 11112223334455589999999999999999999999999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-----------c
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----------H 268 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------h 268 (491)
+++...+.++.. +|..+.++||+.+.+....|..|.+....+......+.+ .
T Consensus 282 T~~kqfLPRLgs-----------------~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 282 TGKKQFLPRLGS-----------------PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred CCCcccccccCC-----------------eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 998655544433 899999999999999999999999998866554443332 2
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-----------cccCcEEEEEEcCCCCEEEEeeC-
Q 011179 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----------GHLEGITFIDSRGDGRYLISNGK- 336 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~s~~~- 336 (491)
.+-.+.++++ |..+.++-.+..|.|.+||+. +...+..+. .+.-.++.++.+..|.+++|.-.
T Consensus 345 ~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 345 QSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred cccceeEEEc-CCCCceeecCCCceEEEEecc----ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 3445677886 556677788889999999987 333333221 12345777788888999888632
Q ss_pred -------CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 337 -------DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 337 -------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
|| .+++|-......... -.......|...... .++....
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~-----------------------------L~T~I~~PH~~~~va--t~~~~~~- 467 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFI-----------------------------LNTKINNPHGNAFVA--TIFLNPT- 467 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeE-----------------------------EEEEEecCCCceeEE--EEEecCc-
Confidence 32 467776654221110 011112233322222 2222222
Q ss_pred CCCcEEEEEecCCeEEEEECCCCc----------EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGE----------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.....++++.||.++||-+...+ +...-..|..++++++|+.||..| +.+.|++|.+||....
T Consensus 468 -rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 468 -RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred -ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 22278899999999999883321 222222478999999999999654 5567899999999883
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=9.2e-19 Score=165.82 Aligned_cols=280 Identities=13% Similarity=0.155 Sum_probs=196.6
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+.+.||++............ ...|+++.|+|.. .+++.|..+|.|.+||+..+.......+ .....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~---~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l----------s~~~~ 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES---PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL----------SALEV 288 (555)
T ss_pred ceEEEEecCCCCCceEEEec---CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc----------ccccc
Confidence 47999999876333333332 3379999999954 6777888999999999987765321111 11223
Q ss_pred CceecEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeE-----EEe-------ccCCCeeEEEEecCCCCEEEEEeC
Q 011179 225 GYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
.|..++..+.|..+- .-+++++.||.|..|+++.-.... ... .....++++.|.+.+.+.++.|+.
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 588899999998644 449999999999999886543211 001 123468999998888899999999
Q ss_pred CCeEEEEecccccCCC----ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeee
Q 011179 291 DNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
+|.|.--+........ +....+..|.++|+++.++|=+..++..+.|-+++||......
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~----------------- 431 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA----------------- 431 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----------------
Confidence 9999874433222222 3344667789999999999987766665569999999876311
Q ss_pred eecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC--cEEEeeccCCCCee
Q 011179 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVR 444 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~ 444 (491)
.++..+..+. ..+....|+|. ....++++..||.|.+||+... .++.+.+.+....+
T Consensus 432 ----------------~Pl~~~~~~~--~~v~~vaWSpt---rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 432 ----------------SPLLSLDSSP--DYVTDVAWSPT---RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT 490 (555)
T ss_pred ----------------Ccchhhhhcc--ceeeeeEEcCc---CceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence 2233333222 22444555554 4467888888999999998653 45555555667788
Q ss_pred eeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 445 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 445 ~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
.+.|++.|+.|+.|...|.+++|++...-..+
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~ 522 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLSESLAVP 522 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcCchhhcc
Confidence 88999999999999999999999997654433
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-19 Score=162.87 Aligned_cols=242 Identities=16% Similarity=0.206 Sum_probs=183.5
Q ss_pred eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC--
Q 011179 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-- 240 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-- 240 (491)
....+|.+.|.++...|.|.+|++|+.||+|+||.+.++.++....+.. .|.|++|+|.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-----------------~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-----------------EIRSVAWNPLSDLC 456 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-----------------eeEEEEecCCCCce
Confidence 4456899999999999999999999999999999999999987766543 799999999665
Q ss_pred EEEEEeCCCeEEEEECCCC-------------------------------------eeeEEEeccCCCeeEEEEecCCCC
Q 011179 241 ELVAGSSDDCIYVYDLEAN-------------------------------------KLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
.||++-... +.|.+..-| .-+.....|...|..+.|+ ..|.
T Consensus 457 vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGD 534 (733)
T KOG0650|consen 457 VLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGD 534 (733)
T ss_pred eEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCc
Confidence 444443322 434332111 0122334688899999997 8899
Q ss_pred EEEEEeCC---CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 284 LIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 284 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+|++...+ ..|.|.++. .......+....+.|.++.|+|...+|++++. ..|+|||+......
T Consensus 535 YlatV~~~~~~~~VliHQLS----K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv--------- 600 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLS----KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV--------- 600 (733)
T ss_pred eEEEeccCCCcceEEEEecc----cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHH---------
Confidence 99988764 468889886 44444555556678999999999988888765 46999999763221
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEeeccC
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYH 439 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h 439 (491)
..+... ....-+++++|.|.-|+.|+.|+.+..||+.-. ++.+++..|
T Consensus 601 -------------------------KkL~tg------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H 649 (733)
T KOG0650|consen 601 -------------------------KKLLTG------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH 649 (733)
T ss_pred -------------------------HHHhcC------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence 111111 122233466778999999999999999999754 577888899
Q ss_pred CCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 440 ~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
...+++++|++.-+++++|+.||++.|+.
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999999999999999885
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.6e-20 Score=167.82 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=180.8
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
....|...|+.++|.|....|++++.||.|.+|+++.........+ .+.....+|.++|.|+++.+++..++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~--------epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV--------EPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce--------eeeEEEecccCceEEEEecCCceEEE
Confidence 4456667899999999999999999999999999943111111111 11122357899999999999999999
Q ss_pred EEeCCCeEEEEECCCC----------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec
Q 011179 244 AGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
+|+.||+|+.|++... .....+.+|.+.|+.++++ .....|++++.||++++|+.. ...+ ..+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~----~~~~-~~f~ 434 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPT----EESP-CTFG 434 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccC----CcCc-cccC
Confidence 9999999999976522 2334677999999999998 667789999999999999986 2222 2232
Q ss_pred ccc--CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 314 GHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 314 ~~~--~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
... +.-.++++-... ++-...+.....+++.++.... .+..+...
T Consensus 435 ~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s-------------------------------~~~~~~s~ 481 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVS-------------------------------DLLIFESS 481 (577)
T ss_pred CccccCCcceEeeccch--hHhhhhhcccccccchhhhhhh-------------------------------heeecccc
Confidence 222 223445543222 1111122334444443322211 11111110
Q ss_pred c-----eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 392 S-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 392 ~-----~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
. ....+...+ ..|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.|++
T Consensus 482 ~~~~~~~~~~in~vV----s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 482 ASPGPRRYPQINKVV----SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred CCCcccccCccceEE----ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 0 001112222 3346788999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCC
Q 011179 467 WEFPGNGEA 475 (491)
Q Consensus 467 w~~~~~~~~ 475 (491)
|++......
T Consensus 558 ~kld~k~~~ 566 (577)
T KOG0642|consen 558 WKLDVKTCV 566 (577)
T ss_pred hhccchhee
Confidence 999766543
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=1.4e-18 Score=146.06 Aligned_cols=214 Identities=15% Similarity=0.122 Sum_probs=172.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC-C
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-G 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~-~ 199 (491)
+-...+|+|.+|++|+..+|++..+..|.||................|...|+.+.|+|..+.|++++.|..-++|.. .
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 334679999999999999999999999999999887656666777889999999999999999999999999999998 6
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee----EEEeccCCCeeEE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTV 275 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~~ 275 (491)
.++......+.. +....+++.|+|..+.+|+|+....|.||-++...-- ..-+.+...|+++
T Consensus 87 ~~~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 87 GGTWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred CCeeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence 666655555444 3348999999999999999999999999987654321 1223567889999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCC--------------CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEE
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 341 (491)
.|+ +++-++++|+.|+.+|++..-..... +..+..+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus 153 dWh-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 153 DWH-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ecc-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 997 78889999999999999975311111 112222333457899999999999999999999999
Q ss_pred EEeCCCCC
Q 011179 342 LWDIRKMS 349 (491)
Q Consensus 342 iwd~~~~~ 349 (491)
+-|.....
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 99987754
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=3.6e-18 Score=167.12 Aligned_cols=318 Identities=15% Similarity=0.169 Sum_probs=202.4
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
..++.|...|..++.+++. .++++|+.||+|++|+..+- ...............+.++.+.+.+..+|+++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 4567889999999888765 99999999999999998642 122222333334568999999999999999999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeeeEEEe--cc
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AH 268 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~h 268 (491)
|++.+++................ ..+...-+..-+|.. ++. .|+.+...+.|..||+.......+++ ..
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n-------~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPN-------LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEEEEccccccccceeeeeeccc-------ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 99999876321111110000000 001111233334443 233 68888888999999998766544433 34
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-cccCcEEEEEEcCCC---CEEEEee--CCCcEEE
Q 011179 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDG---RYLISNG--KDQAIKL 342 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~---~~l~s~~--~dg~i~i 342 (491)
.+.|++++.. +.++++++|+..|.+.+||+| -..++..+. ++..+|+.+..+|-. ...++++ ..+.|.+
T Consensus 1195 hG~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 HGLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 5789999996 788899999999999999999 666665553 445678777776642 3555444 4678999
Q ss_pred EeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeE
Q 011179 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 422 (491)
|++.++......-......... ...+.+.. ..........+. +...+.++++|+.|..|
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls------------~~~Ps~~~-----~kp~~~~~~~~~----~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILS------------YALPSNDA-----RKPDSLAGISCG----VCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred eecccCcceEEEEcCCCCcchh------------hhcccccC-----CCCCcccceeee----cccCCceeeecCCccce
Confidence 9999865433221110000000 00000000 000001111111 22246788999999999
Q ss_pred EEEECCCCcEE------------------------------------------------Eee--------ccCCCCeeee
Q 011179 423 YVYDLVSGEQV------------------------------------------------AAL--------KYHTSPVRDC 446 (491)
Q Consensus 423 ~iwd~~~~~~~------------------------------------------------~~~--------~~h~~~v~~~ 446 (491)
+.||....+.. ..+ ..|..+|+++
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997532111 000 1367789999
Q ss_pred EecCCCC-eEEEEeCCCcEEEEc
Q 011179 447 SWHPSQP-MLVSSSWDGDVVRWE 468 (491)
Q Consensus 447 ~~sp~~~-~l~s~~~Dg~v~iw~ 468 (491)
++....+ +|++++.||.|+||.
T Consensus 1409 a~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCccEEEEecCCCeeeecC
Confidence 8876554 899999999999995
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=7.2e-17 Score=138.58 Aligned_cols=280 Identities=16% Similarity=0.260 Sum_probs=199.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC--CeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~iw~~~~~ 201 (491)
...++.+.|..|...|..|+.|| .++|+.+.-.+. .........|..+-|+ ..++|..+.+ ..+++.+++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 45677888999999999999998 678887654331 1112223356666675 4556665554 35899998877
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEe
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG 278 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~ 278 (491)
..+.....+. +|.++.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.+++++
T Consensus 79 ~~ICe~~fpt-----------------~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 79 TTICEIFFPT-----------------SILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEecCC-----------------ceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 7665554333 7889998744 577766554 99999999999887763 44456666665
Q ss_pred cCCCCEEEEEe--CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCCccccc
Q 011179 279 DESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN 355 (491)
Q Consensus 279 ~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 355 (491)
..+.+++.-+ ..|.|.+||.. +-+++..+..|.+.+-+++|+++|.+||+++..|+ ||++.+.+
T Consensus 139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------- 205 (391)
T KOG2110|consen 139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------- 205 (391)
T ss_pred -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------
Confidence 4455766543 36899999997 78889999999999999999999999999999998 79999977
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE---
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--- 432 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--- 432 (491)
++.+..|+....... .++++|+|++.+|++.+..++|+||.+.....
T Consensus 206 --------------------------G~kl~eFRRG~~~~~----IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~ 255 (391)
T KOG2110|consen 206 --------------------------GQKLYEFRRGTYPVS----IYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPP 255 (391)
T ss_pred --------------------------ccEeeeeeCCceeeE----EEEEEECCCCCeEEEecCCCeEEEEEecccccCCC
Confidence 466666665543333 35667788999999999999999998763210
Q ss_pred ------------------------E----------EeeccCCCCe-eeeEec--CCCCeEEEEeCCCcEEEEcCCCC
Q 011179 433 ------------------------V----------AALKYHTSPV-RDCSWH--PSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 433 ------------------------~----------~~~~~h~~~v-~~~~~s--p~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+ ...+...+.. ..+.+. +..+.+..++.||.++.|.++..
T Consensus 256 ~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 256 ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 0000011111 233444 46678999999999999999874
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=2.4e-19 Score=163.66 Aligned_cols=244 Identities=16% Similarity=0.192 Sum_probs=174.2
Q ss_pred ECCCCCeEEE--EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEE
Q 011179 177 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV 253 (491)
Q Consensus 177 ~sp~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~v 253 (491)
|+.+..++++ ++..|.|.|+++.......-..++.... ...|+++.|.| |...|++++.||.|++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N------------gt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN------------GTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc------------CceeeecccCCCChHHeeecccCceEEE
Confidence 4445555554 4567899999997544333222222221 22799999999 7788999999999999
Q ss_pred EECCCC-------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 254 YDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 254 wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
|.+..+ .+...+..|...|+++.|+|--.+.|++++.|.+|++||++ ..+....+.+|.+.|..++|+|
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence 998754 34456789999999999998888999999999999999998 7778889999999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
+|+.+++.+.||+|++|+.++..... ..-++... ..-.++.|..
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv---------------------------------~Eg~gpvg-tRgARi~wac-- 774 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPV---------------------------------YEGKGPVG-TRGARILWAC-- 774 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCcc---------------------------------ccCCCCcc-CcceeEEEEe--
Confidence 99999999999999999998854322 11111111 1112233333
Q ss_pred cCCCcEEEEEecC----CeEEEEECCCCc--EEEeeccC-CCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCC
Q 011179 407 STGQKYIYTGSHD----SCVYVYDLVSGE--QVAALKYH-TSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 407 s~~~~~l~~~~~d----g~i~iwd~~~~~--~~~~~~~h-~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+|+++++.+.| ..|.+||..+-. .+.+..-. .-.+.--.+.+|.. +|++|-.|..|.+|++-....
T Consensus 775 --dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 775 --DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred --cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 89998887766 468888876532 33322111 11112223455655 778888999999999876543
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=9e-17 Score=155.57 Aligned_cols=291 Identities=28% Similarity=0.446 Sum_probs=214.9
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCe
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPI 192 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~ 192 (491)
.....+..|...|.+++|+|+++.+++++. |+.+++|+...+..+... ..|...|.+++|+|++. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL---AGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee---ccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 445677899999999999999998888885 999999999875444433 34777899999999998 5555589999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~ 271 (491)
|++||...+..... ...+|.... ...|++++..+++++.|+.+++|++..... ...+..|...
T Consensus 223 i~~wd~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 223 IRLWDLSTGKLLRS---------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred EEEEECCCCcEEee---------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 99998775444331 011343343 338999998899999999999999987664 4444678899
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--cccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCC
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~ 348 (491)
+.++.|. +++..+++++.|+.+.+||.. ......... .|...+..+.+.+++..++.+ ..|+.+.+|++...
T Consensus 287 v~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 287 VLSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 9999997 567777779999999999886 444444443 677789999994332455555 67888999999873
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE-EEecCCeEEEEEC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~ 427 (491)
. .......... . ....+++ ...++ .+..++.+.+|+.
T Consensus 362 ~----------------------------------~~~~~~~~~~---~----~~~~~~~-~~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 362 K----------------------------------PLKTLEGHSN---V----LSVSFSP-DGRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred c----------------------------------eeEEecCCce---E----EEEEECC-CCCEEEEecCCCceEEEec
Confidence 2 1111111111 1 1123333 22333 3788999999999
Q ss_pred CCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 428 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
...........+...+....+++++..+++++.++.+++|+...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 98888777765447899999999999999999999999999887
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.8e-18 Score=151.06 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=156.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceee
Q 011179 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 231 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 310 (491)
..++|+.+|..|++|+.||.++||+..+...+.....|...|.++.|+ +++.+|++-+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 689999999999999999999999999988888888999999999998 899999999999 99999998 555554
Q ss_pred Eecc--ccCcEEEEEEcCCC-----CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 311 VLMG--HLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 311 ~~~~--~~~~i~~~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
.... .......+.|+.++ ..++.....+.|+.||+......... +
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l----------------------------~ 273 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL----------------------------R 273 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc----------------------------c
Confidence 4432 23345567787766 33334445566777777542211000 0
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee-ccCCCCeeeeEecCCCCeEEEEeCCC
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
....... .....+++.|++|++++.|+.||.|.|++..+.+.++.+ +.|...|+.+.|+||.+++++.+.|.
T Consensus 274 ~~~~~~~-------~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 274 LRKKIKR-------FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhhhhc-------cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 0000001 112234467889999999999999999999988887766 48999999999999999999999999
Q ss_pred cEEEEcCCCCCCCC
Q 011179 463 DVVRWEFPGNGEAA 476 (491)
Q Consensus 463 ~v~iw~~~~~~~~~ 476 (491)
...+..+..+....
T Consensus 347 ~~~v~~l~vd~~~~ 360 (398)
T KOG0771|consen 347 EAAVTKLAVDKTMQ 360 (398)
T ss_pred ceeEEEEeeccccc
Confidence 99999988765443
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=4.9e-18 Score=142.99 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=178.7
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCccccccc---cccccccccccccCCCCceecEEEEEEc-------CCCCE
Q 011179 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN---VTEIHDGLDFSAADDGGYSFGIFSLKFS-------TDGRE 241 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~~~~s-------~~~~~ 241 (491)
...+.|+|||..|++-+.|..+++|++...-...... ....+..+.+ .....|...+|- |+..+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~------~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY------QEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe------ccCCEEEEEEeeeccccCCCccce
Confidence 4568899999999999999999999985322111100 0000000000 011256666664 57789
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEec--cCC---CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe----
Q 011179 242 LVAGSSDDCIYVYDLEANKLSLRILA--HTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---- 312 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 312 (491)
+++.+.+.-|++||.-+++....+.+ |.. ...+++|+ ++|..|++| ....|+++|+...... ..+...
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~-c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRD-CPVYTTVTKG 202 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCC-Ccchhhhhcc
Confidence 99999999999999999988766653 433 44689998 889888776 4679999998422211 111111
Q ss_pred -ccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC
Q 011179 313 -MGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 313 -~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
.+..+.|.+++|+|.. ..++.++....+-||.-.. ..++..+.+
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------------------------------~~pl~llgg 248 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------------------------------RRPLQLLGG 248 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCC----------------------------------CCceeeecc
Confidence 2336678999999964 4899999988888887665 356777778
Q ss_pred CceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCC-CcEEEeeccCCC-Cee--eeEecCCCCeEEEEeCCCcEE
Q 011179 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS-GEQVAALKYHTS-PVR--DCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~--~~~~sp~~~~l~s~~~Dg~v~ 465 (491)
|....+.+ .|.++|+.|++|.. |-.|..||++. +.++..+..|.+ .-. -....|++++|++|+.||.|+
T Consensus 249 h~gGvThL------~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 249 HGGGVTHL------QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred cCCCeeeE------EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 87555443 56668999999887 67899999976 456777777755 222 345568999999999999999
Q ss_pred EEcCCCCCC
Q 011179 466 RWEFPGNGE 474 (491)
Q Consensus 466 iw~~~~~~~ 474 (491)
+||+.....
T Consensus 323 vwdlk~~gn 331 (406)
T KOG2919|consen 323 VWDLKDLGN 331 (406)
T ss_pred EEecCCCCC
Confidence 999988554
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.9e-18 Score=149.14 Aligned_cols=211 Identities=17% Similarity=0.186 Sum_probs=162.5
Q ss_pred ccccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEECCCC-CeEEEEECCC
Q 011179 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~ 191 (491)
-.+.+|+++|..++|+|- .+.+|+|+.|.+|.||++..+... .......+|...|--++|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 356899999999999995 467899999999999998765222 2234557888899999999975 6788999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
+|.+||+.+++..... .|...|+++.|+.||.+|++.+.|..|+|||..+++.+..-.+|.+.
T Consensus 155 ~v~iWnv~tgeali~l-----------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITL-----------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred eEEEEeccCCceeeec-----------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 9999999999864332 26668999999999999999999999999999999998888788753
Q ss_pred -eeEEEEecCCCCEEEEEe---CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCC
Q 011179 272 -VNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIR 346 (491)
Q Consensus 272 -v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~ 346 (491)
-.-+.|. .++.++-+|- .+..+-+||....... -....+ ...+.|.---|.++..++..+ -.|+.|+.|.+.
T Consensus 218 k~~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 218 KPARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEEP-IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred CcceeEEe-ccCceeeeccccccccceeccCcccccCc-ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 3344554 5677555543 4678999998744322 222233 345667666688888887654 468999999987
Q ss_pred CC
Q 011179 347 KM 348 (491)
Q Consensus 347 ~~ 348 (491)
..
T Consensus 295 ~d 296 (472)
T KOG0303|consen 295 NE 296 (472)
T ss_pred CC
Confidence 63
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=6.4e-18 Score=160.17 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=191.2
Q ss_pred cccccCCCCCCccccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEECCCCC
Q 011179 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 107 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~ 182 (491)
.++.......+.....-...|.|+.|+|. .++||.|..+|.|.+||+..+... ........|..+++.+.|..+..
T Consensus 225 ~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 225 LVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred EEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC
Confidence 34444444455666677899999999995 577888899999999999876431 22233467888999999987654
Q ss_pred e--EEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 011179 183 H--LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 183 ~--l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
- +++++.||.|..|+++.-............. .......-...+++++|.+ +-..+++|+..|.|+.-+....
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhccccccc----ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 4 9999999999999876433211111111000 0011112233789999998 5567999999999887443322
Q ss_pred e--------eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CE
Q 011179 260 K--------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RY 330 (491)
Q Consensus 260 ~--------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 330 (491)
+ ....+..|.++|.++.++|-....|.+++ |.+++||.-. ....++..+..+...|++++|||.. ..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCceE
Confidence 2 12345578899999999966666666666 9999999864 2456777777788889999999975 46
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
|+++..||.|.+||+...... ++.+..-.. .......+++.|
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~--------------------------------Pv~s~~~~~------~~l~~~~~s~~g 498 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEE--------------------------------PVLSQKVCS------PALTRVRWSPNG 498 (555)
T ss_pred EEEEcCCCceehhhhhccccC--------------------------------Ccccccccc------cccceeecCCCC
Confidence 788888999999999874432 222222111 111222466689
Q ss_pred cEEEEEecCCeEEEEECCC
Q 011179 411 KYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~ 429 (491)
+.|++|...|.+.+|++..
T Consensus 499 ~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cEEEEecCCCcEEEEEcCc
Confidence 9999999999999999853
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=148.98 Aligned_cols=262 Identities=12% Similarity=0.125 Sum_probs=185.8
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+|.+.|+++.|+.++++|++|+.|..+++|+++..-..++.+.... ....|...|.|++|...++.+++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~---------~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV---------MEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee---------ccCccccceEEEEEccCCeeEecC
Confidence 46788999999999999999999999999999874332222111111 112467799999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccC---CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
..+++|...|+++.+.+..+ .|. +.|..+..+ |-.+.|++.+.++.|.+||.+.......++ .+.........+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTA 200 (609)
T ss_pred CCcceeEeeecccceeeeee-cccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceee
Confidence 99999999999999887766 343 589999998 558899999999999999998443233332 233344567788
Q ss_pred EEcCCC-CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 323 DSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 323 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
.|+|.. .+|++++..+.+.+||++....... .+.+......-..-.
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---------------------------------~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVY---------------------------------QRSMFKGLPQENTEW 247 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHH---------------------------------hhhccccCcccchhh
Confidence 899964 5778888889999999998542211 111111000000111
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcE-EEeeccCC-------CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~-------~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+..|+|+|..+++--....-.+||+.+.++ +..+. |. ..+.+++|--|.. +++|+++=.|++|.++...
T Consensus 248 M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCc
Confidence 2335677888888776666677888877543 33333 22 3577788876654 9999999999999998654
Q ss_pred C
Q 011179 474 E 474 (491)
Q Consensus 474 ~ 474 (491)
+
T Consensus 326 d 326 (609)
T KOG4227|consen 326 D 326 (609)
T ss_pred c
Confidence 4
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=4.1e-18 Score=162.89 Aligned_cols=235 Identities=20% Similarity=0.220 Sum_probs=163.3
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCcccccccccccccccccccc
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+..|.+||.+... ... ...+...+...+|+|||+.|++++.+ ..|++||+.+++...+....
T Consensus 183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 222 12344579999999999999988754 37999999887643332211
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEe-CCCeE--EEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEE-eCCCeEEEE
Q 011179 222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCI--YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVW 297 (491)
Q Consensus 222 ~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i--~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~iw 297 (491)
+ ....++|+|||+.|+.+. .+|.+ ++||+.+++. ..+..+...+....|+ ++++.|+.. ..+|...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233579999999888765 57754 5557766654 5566677778899998 677766554 467888999
Q ss_pred ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccc
Q 011179 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
++... +.....+ .+.. ....|+|+|+.|+..+.++ +.+||+.+...
T Consensus 320 ~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--------------------------- 365 (429)
T PRK01742 320 RMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST--------------------------- 365 (429)
T ss_pred EEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------------------------
Confidence 87522 2222222 3333 4578999999998887765 66699876321
Q ss_pred cCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC--CCCcEEEeeccCCCCeeeeEecCC
Q 011179 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
..+.... ...++.|+|||++|+.++.++.+.+|++ .+|+.+..+..|.+.+...+|+|-
T Consensus 366 --------~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 366 --------EVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------EEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111110 0135678999999999999998888875 368888889888899999999985
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.2e-19 Score=157.97 Aligned_cols=273 Identities=11% Similarity=0.105 Sum_probs=192.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC-----CeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
...+..|...|..++|.|....|++++.||+|.+|+++. ...+..+....+|.++|.|+++.+++..+.+|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 347789999999999999999999999999999999932 345667778889999999999999999999999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHT 269 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~ 269 (491)
+|+.|++....- .....+.. .-.....||...++.+++|+....|++++.||++++|+.....+ ..+. ...
T Consensus 367 ~I~~w~~p~n~d-----p~ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 367 TIRCWNLPPNQD-----PDDSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH 439 (577)
T ss_pred eeeeeccCCCCC-----cccccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc
Confidence 999998752111 00001000 01122358999999999999999999999999999999876655 2232 223
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-------ccCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~dg~i~i 342 (491)
+...++.+-.......++...-+.-.+++.. ....+..+.. ....+..+.++|++.+.+++..|+.|++
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 3446666642221222222222222333332 1122222111 1234677889999999999999999999
Q ss_pred EeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeE
Q 011179 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 422 (491)
+|..++ ..+.....|.. ...+.++.|+|-+|++++.|+.+
T Consensus 516 ~dn~~~----------------------------------~~l~s~~a~~~------svtslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 516 FDNKTG----------------------------------KILHSMVAHKD------SVTSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred cccccc----------------------------------ccchheeeccc------eecceeecCCCceEEeecCCcee
Confidence 999883 33444444432 23344777899999999999999
Q ss_pred EEEECCCCcEEEeeccCC
Q 011179 423 YVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~ 440 (491)
++|.+....++.....|.
T Consensus 556 ~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 556 RLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ehhhccchheeecccccc
Confidence 999998877776666664
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=4e-18 Score=141.32 Aligned_cols=218 Identities=14% Similarity=0.200 Sum_probs=165.6
Q ss_pred CCCCCcccc-CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEECC--CCCeEEE
Q 011179 113 PVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVY 186 (491)
Q Consensus 113 ~~~~~~~~~-~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp--~~~~l~~ 186 (491)
|.+....|. .+-+.|.|+.|.|++..||+-. |..|.+|+++.+..+..... ...++...++-+|+| +++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 334344444 5667999999999999999875 78999999998765322221 123455788899999 6777776
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eeeEE
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLR 264 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~-~~~~~ 264 (491)
. .|++++.||+++......+ . ..|...|..+.|+|+.+ +|++|+.||.|++||.+.. .++..
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI--~-------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSI--E-------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred e-CCCcEEEEEccchhhhcch--h-------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 5 4899999999976543222 1 24555899999999776 6788999999999999764 46788
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc-------------------------CCCceeeEeccccCcE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGI 319 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~i 319 (491)
+.+|.-.|.++.|+|...++|++|+.|..|.+|...... .....+.++..|.+.|
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 889999999999998889999999999999999754211 1122345677899999
Q ss_pred EEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 011179 320 TFIDSRGDGR-YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 320 ~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 347 (491)
++++|+.-.. +||+-+.||.+.|=.+..
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 9999987544 578889999998876643
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.9e-16 Score=149.35 Aligned_cols=338 Identities=16% Similarity=0.162 Sum_probs=220.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC---CeEEEEECCCeEEEEECCCCccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
....||+|+++++... +..|.||...++..+. ....|..+++.+.+.|.. .++.+++.+|.|++||...+...
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 4457999999888775 4589999999997766 556788899999998865 46778999999999999877654
Q ss_pred cccccccccccccc---------------------c---c----------------------------------------
Q 011179 205 SLANVTEIHDGLDF---------------------S---A---------------------------------------- 220 (491)
Q Consensus 205 ~~~~~~~~~~~~~~---------------------~---~---------------------------------------- 220 (491)
+........-.+.+ . .
T Consensus 96 kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 96 KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 33221100000000 0 0
Q ss_pred -----------------------cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--eeeEEEeccCCCee
Q 011179 221 -----------------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N--KLSLRILAHTSDVN 273 (491)
Q Consensus 221 -----------------------~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~ 273 (491)
.....|...+++.+++|+++++|+|..||.|.+|.--. + .....+.-|...|+
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 00014677789999999999999999999999996432 1 23355667999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
+++|+ .+|.+|++|+..|.+.+|.+. +++ .+-+..-.++|..+.++||+.+.+....|+.|.+....++.....
T Consensus 256 ~L~fS-~~G~~LlSGG~E~VLv~Wq~~----T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 256 SLSFS-SDGAYLLSGGREGVLVLWQLE----TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred eeEEe-cCCceEeecccceEEEEEeec----CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 99998 899999999999999999997 333 333444568899999999999999999999999998876554333
Q ss_pred ccCCCcc-------ceeeeeeecCCC-CCccccCCCCceEEEEeC----------------CceeEeeEEEEecccccCC
Q 011179 354 CNLGFRS-------YEWDYRWMDYPP-QARDLKHPCDQSVATYKG----------------HSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 354 ~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~s~~ 409 (491)
...-... ...-...+...| ....+..+....++-|.. +.............+.+..
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 2111000 000011122222 112222222222222211 1111112222233344556
Q ss_pred CcEEEEEe--------cCC--eEEEEECCCCcEEEe----e-ccCCCCeeeeEecC-CCC-eEEEEeCCCcEEEEcCCCC
Q 011179 410 QKYIYTGS--------HDS--CVYVYDLVSGEQVAA----L-KYHTSPVRDCSWHP-SQP-MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 410 ~~~l~~~~--------~dg--~i~iwd~~~~~~~~~----~-~~h~~~v~~~~~sp-~~~-~l~s~~~Dg~v~iw~~~~~ 472 (491)
|.++++.- .|| .+++|-......-.. + ..|...+...++.+ ... ..++++.||.++||-+...
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 88888863 233 578887654433222 2 36877766666654 333 8999999999999999766
Q ss_pred CCC
Q 011179 473 GEA 475 (491)
Q Consensus 473 ~~~ 475 (491)
...
T Consensus 490 ~n~ 492 (792)
T KOG1963|consen 490 SNI 492 (792)
T ss_pred ccc
Confidence 544
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.6e-17 Score=132.43 Aligned_cols=249 Identities=16% Similarity=0.249 Sum_probs=170.7
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.|..-+|+|.+++|++|..+|.|.+..+.+-....... + + ....-...+|.++|+.++|. ..+|++|+ ||.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~-~----g-k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP-P----G-KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL 82 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC-C----C-CcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence 46677899999999999999999999986432111100 0 0 11111235788899999998 33566665 599
Q ss_pred EEEEECCCCee------eEE--EeccC-----CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 251 IYVYDLEANKL------SLR--ILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 251 i~vwd~~~~~~------~~~--~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
|+-|..+.... +.+ ...|. ..|+++-.. |..+-++.++.|+.++-||++ .++..+.+.+|++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE----~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLE----DGRIQREYRGHTD 157 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEec----CCEEEEEEcCCcc
Confidence 99998754322 001 11222 367888886 455555566689999999999 8999999999999
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc---ee
Q 011179 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS---VL 394 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 394 (491)
.|.++.-......+++|+.||++++||.++.+. +..+.... ..
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~----------------------------------v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH----------------------------------VSMIEPYKNPNLL 203 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccce----------------------------------eEEeccccChhhc
Confidence 999999866666799999999999999998543 33222211 11
Q ss_pred EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
++- ...|-.+...+..++++|+. -.+.+|++++.++...+. -..++..+.|. ...+++++..+.|.-|.+..-
T Consensus 204 Rp~-~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 204 RPD-WGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred Ccc-cCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeeeeccE
Confidence 100 00011123336677877764 459999999998887775 45678889994 447888887788888887653
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.7e-17 Score=138.97 Aligned_cols=323 Identities=18% Similarity=0.203 Sum_probs=199.7
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCcccccc
Q 011179 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 129 ~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 207 (491)
-++|||+|+++|+++.- .+.|-|..+-+..+.... -..|..+.|..|..+++++ ..++.|.+|++...+....+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 36899999999999765 788888876422221111 2258889999998777664 56789999999876653332
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
. + ...++.+++|||||+.|+ +..-+-.|.||.+.+.+... +.-....+..++|+ +++++.+
T Consensus 88 d--e--------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~-~dg~f~a 149 (447)
T KOG4497|consen 88 D--E--------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH-PDGQFCA 149 (447)
T ss_pred c--c--------------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC-CCCceee
Confidence 2 1 122789999999996555 55568889999998877643 22233456888886 7888877
Q ss_pred EEeC------------------------------------CCeEEEEecccccCCCceeeEeccc-cCcEEEEEEcCCCC
Q 011179 287 SGSD------------------------------------DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGR 329 (491)
Q Consensus 287 s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 329 (491)
..+. +..+.+||.- - ....+.-| .-++..+.|+|.++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~----L--eykv~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV----L--EYKVYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch----h--hheeeeeeeccceeEEEeccccc
Confidence 6653 1233444421 0 01111112 25688999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccc---------------cCCCccceeeeeeecCCCCCccccCCC-----------Cc
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASC---------------NLGFRSYEWDYRWMDYPPQARDLKHPC-----------DQ 383 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 383 (491)
+|++|+.|+.+++.+--+-+..... ............++.+.|......... -.
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 9999999999988664332111110 011112222233344443322211110 01
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEec--CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
.+..++............--.+||+|..|+++-.. -+.+.+||++..+.-..+. ...+|....|+|....|+.+...
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~ 382 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGK 382 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCC
Confidence 11222211110011111122368889999998765 3689999998777655554 56789999999999988888888
Q ss_pred CcEEEEcCCCCCCCCCCCCc
Q 011179 462 GDVVRWEFPGNGEAAPPLNK 481 (491)
Q Consensus 462 g~v~iw~~~~~~~~~~~~~~ 481 (491)
..+++|..........+...
T Consensus 383 srLY~W~psg~~~V~vP~~G 402 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKG 402 (447)
T ss_pred ceEEEEcCCCceEEecCCCC
Confidence 88999998876544444433
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.8e-16 Score=144.95 Aligned_cols=252 Identities=15% Similarity=0.162 Sum_probs=159.0
Q ss_pred CCceEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~ 201 (491)
.+....++++|++++|++++ .++.|.+|+++....+...... ........++|+|++++|++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 35567899999999987664 5788999999732122211111 12224678999999999888765 789999999643
Q ss_pred c-cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEE-----Ee-ccCCCee
Q 011179 202 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLR-----IL-AHTSDVN 273 (491)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-----~~-~h~~~v~ 273 (491)
. ........ .+.....+++++|+++++++++ .++.|.+||+.+...+.. .. .......
T Consensus 113 g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 113 GIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred CCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 2 21111100 0111466788999999886555 569999999976432211 11 1234467
Q ss_pred EEEEecCCCCEEEEEeC-CCeEEEEecccccCCCceeeEeccc------cCcEEEEEEcCCCCEEEEeeC-CCcEEEEeC
Q 011179 274 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWDI 345 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~ 345 (491)
.+.|+ +++++++++.. ++.|.+|++.......+.+..+..+ ......+.++|++++++++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89997 78888887776 8999999996211111223322211 112335889999999988754 688999998
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~i 424 (491)
..... . ..+.++.... .......++|+|++|++++. +++|.+
T Consensus 258 ~~~~~---------------------------------~-~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS---------------------------------V-LSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC---------------------------------e-EEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 1 1111111000 11123367889999998876 889999
Q ss_pred EECC
Q 011179 425 YDLV 428 (491)
Q Consensus 425 wd~~ 428 (491)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=2.5e-18 Score=151.57 Aligned_cols=277 Identities=19% Similarity=0.264 Sum_probs=209.3
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
+.--...-+.+.++.+|+.|+.|+..|.|-.+|..++.....+.... .|.++.|-.+.+++|++ ....+.|||-.
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~LHneq~~AVA-QK~y~yvYD~~ 199 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFLHNEQFFAVA-QKKYVYVYDNN 199 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhhcchHHHHhh-hhceEEEecCC
Confidence 33335566889999999999999999999999999986655544333 69999999988888876 46789999976
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
.-+..++... ..|..+.|.|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+
T Consensus 200 GtElHClk~~------------------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN- 260 (545)
T KOG1272|consen 200 GTELHCLKRH------------------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN- 260 (545)
T ss_pred CcEEeehhhc------------------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-
Confidence 5554443322 168889999998889999999999999999999999988888899999998
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
|-+..+-+|...|+|.+|... ...++..+..|.++|.+|++.++|++++|.+.|..++|||++....
T Consensus 261 P~NaVih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------- 327 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------- 327 (545)
T ss_pred CccceEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---------
Confidence 667789999999999999987 7788888899999999999999999999999999999999998432
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEE-CCCC--cEEEe
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSG--EQVAA 435 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~ 435 (491)
+.++.. +.. ...++| .+-+++.+....|.||. .-.+ ..-..
T Consensus 328 -------------------------l~t~~tp~~a--------~~ls~S--qkglLA~~~G~~v~iw~d~~~~s~~~~~p 372 (545)
T KOG1272|consen 328 -------------------------LHTYRTPHPA--------SNLSLS--QKGLLALSYGDHVQIWKDALKGSGHGETP 372 (545)
T ss_pred -------------------------cceeecCCCc--------cccccc--cccceeeecCCeeeeehhhhcCCCCCCcc
Confidence 111111 110 111233 23344455556799995 2221 11111
Q ss_pred eccC--CCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 436 LKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 436 ~~~h--~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
+-.| .++|.++.|.|-...|-.|-..|.-.+.=
T Consensus 373 Ym~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilV 407 (545)
T KOG1272|consen 373 YMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILV 407 (545)
T ss_pred hhhhccCcccccceeccHHHeeeccccCCceeEec
Confidence 1122 46899999999888887777666554443
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=5.8e-19 Score=165.99 Aligned_cols=242 Identities=21% Similarity=0.283 Sum_probs=189.3
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+|...|+|..|...|.++++|+.|..++||..+++.+... ..||.+.|+.++.+.+..+++++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs----------------~rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS----------------CRGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc----------------CCCCccccchhccchhhhhhhhc
Confidence 47888899999999999999999999999999888776443 34799999999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC--CceeeEeccccCcEEEEE
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMGHLEGITFID 323 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~i~~~~ 323 (491)
+.|..|++|-+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-.... ..+.. + ....-+.++.
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~-~-~~~~~~~s~~ 323 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLK-F-TEKDLVDSIL 323 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCC-c-ccccceeeee
Confidence 99999999999999999999999999999999843 27789999999998711100 01111 1 1224567788
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
|-.++.-+++++.|+.-..|.+..... +.. ...|.
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------------------------------------~~~-----~lif~ 358 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLAW----------------------------------------RSN-----LLIFV 358 (1113)
T ss_pred ccccccccccccCCcccccchhhHhhh----------------------------------------hcc-----ceEEE
Confidence 888889999999999888887654110 000 00010
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
-..+--..+.+++-.+-.+.+|++.+|..++.+.+|...+..+.++|-+. ...+++.||...|||+..+-..
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 00001124667777788899999999999999999999999999999777 5568899999999999877544
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=9.1e-17 Score=139.51 Aligned_cols=272 Identities=15% Similarity=0.183 Sum_probs=186.2
Q ss_pred eEEEEEECCCCC-eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
+|..+.|.++.. .|++|+.|..|++|.+..+....--.. ..-.....+|...|+++.|+|+|..|++|+.+|
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~-------V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK-------VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee-------EEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 799999999876 999999999999999876544321000 001123456888999999999999999999999
Q ss_pred eEEEEECC--------C--------CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec
Q 011179 250 CIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 250 ~i~vwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
.|.+|-.. + ......+.+|...|..++|+ ++++++++++.|..+++||+. .+.....+.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~ 162 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAILD 162 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeecc
Confidence 99999765 2 12334566899999999998 889999999999999999998 889999999
Q ss_pred cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 314 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+|...+..++|.|-++++++-+.|...+.+.+........... ..+ .........+...+.+...
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---------~~m----~~~~~~~~e~~s~rLfhDe-- 227 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---------DIM----PAKAFNEREGKSTRLFHDE-- 227 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---------eEe----eecccCCCCcceeeeeecC--
Confidence 9999999999999999999999998777777654322111100 000 0000011111222222221
Q ss_pred eEeeEEEEecccccCCCcEEEEEec----C-----CeEEEEECCC-CcEEEeeccCCCCeeeeEecC-------------
Q 011179 394 LRTLIRCHFSPVYSTGQKYIYTGSH----D-----SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHP------------- 450 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~~~~----d-----g~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp------------- 450 (491)
+...+...+.|+|+|.++++... . +..|+|+-.. .++...+.....+...+.|+|
T Consensus 228 --TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 228 --TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred --chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 22233445678889999987542 2 2346665432 234555555556666666655
Q ss_pred -----CCCeEEEEeCCCcEEEEcCCCC
Q 011179 451 -----SQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 451 -----~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+-.+|.++. ..|+|||.+..
T Consensus 306 ~~~lpyrlvfaiAt~-~svyvydtq~~ 331 (434)
T KOG1009|consen 306 LFVLPYRLVFAIATK-NSVYVYDTQTL 331 (434)
T ss_pred ccccccceEEEEeec-ceEEEeccccc
Confidence 2234555554 57999997764
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=143.47 Aligned_cols=293 Identities=17% Similarity=0.240 Sum_probs=201.8
Q ss_pred CCCCceEEEEEcCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
.|...-+.+..+|||+|+ |+|..--.|++||+..-..-. ..+-....|.-.-.+-|-..++.-..|.+|.+..-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---eecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 456677889999999985 567778899999998642111 111222245555555555566666677777665322
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
|... ...++. .-.+++++.-..-|++++....|+-++++.|..+..+....+.++++..+ +
T Consensus 125 G~hy-~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~ 185 (703)
T KOG2321|consen 125 GRHY-RTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-E 185 (703)
T ss_pred Ceee-eeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-C
Confidence 2111 111111 23456666544446666666779999999999998888888999999998 6
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCcee--eEeccccC-----cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~-----~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
...+|++|+.+|.|..||.++....+..- .....|.+ .|+++.|+.+|-.+++|..+|.+.|||++....
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--- 262 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--- 262 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence 77899999999999999998332111111 11122333 399999999999999999999999999998432
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
...+.|.....+..+.|... .+++.|++ .....++|||-.+|+..
T Consensus 263 --------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S-~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 263 --------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVS-MDKRILKIWDECTGKPM 307 (703)
T ss_pred --------------------------------eeecccCCccceeeeccccc--CCCceEEe-cchHHhhhcccccCCce
Confidence 22334444445555555443 23344444 44568999999999999
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
..+.. ...++++|+-|++-+++++-.++.+..|=++.-++.+
T Consensus 308 asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 308 ASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred eeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 88874 4459999999999999999999998888877765543
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-17 Score=145.94 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=148.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
.+++|+++|..|++|+.||++|||+..+. ........|...|.++.|+|||+.|++.+.| ..+||+++++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 89999999999999999999999998764 3333445666789999999999999999999 9999999999554433
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCee-----eEEEeccCCCeeEEEE
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RE--LVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 277 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~---~~--l~~~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~ 277 (491)
.... -......+.|+.|+ .+ ++....-+.|+.||+...+. ..+.......|++++.
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 3211 11145667888776 22 23333445677766543221 1122233457999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceee-EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+ ++|++++.|+.||.|-|++.. .-+.+. .-..|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 7 899999999999999999986 333333 3357889999999999999999999999988887754
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=5.4e-15 Score=127.20 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=154.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
...|--+-||. .++|..+.+ ..++++++..+..+....... +|.++.++. ++|+++-.+ .|.|||+++.
T Consensus 46 ~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr--~RLvV~Lee-~IyIydI~~M 116 (391)
T KOG2110|consen 46 GVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR--KRLVVCLEE-SIYIYDIKDM 116 (391)
T ss_pred CeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--ceEEEEEcc-cEEEEecccc
Confidence 34455556664 466655543 459999999887777765544 699999864 456665544 4999999988
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+....+.... .+...+.++.+++.+.+|+.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+
T Consensus 117 klLhTI~t~~-------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs- 182 (391)
T KOG2110|consen 117 KLLHTIETTP-------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS- 182 (391)
T ss_pred eeehhhhccC-------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-
Confidence 8765554332 1233677788888888888744 36899999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCe-EEEEecccccCCCceeeEeccc--cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 280 ESGHLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 280 ~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
++|.+||+++..|+ |||+.+. .++.+..+... ...|.+++|+|++++|++.+..++|++|.+....
T Consensus 183 ~~G~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 183 PDGTLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCCEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 89999999999986 6899997 77777777543 3458899999999999999999999999998754
No 204
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-16 Score=135.72 Aligned_cols=308 Identities=17% Similarity=0.288 Sum_probs=198.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeE----EEEEeecC----------CCceeEEEEEECCCC--CeEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAK----------SLRWTVTDTSLSPDQ--RHLVYA 187 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~----------~~~~~v~~~~~sp~~--~~l~~~ 187 (491)
..-|.++.|..+|.+||+|..+|.|.+|.-..... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999997544321 11111111 112368899999876 466777
Q ss_pred ECCCeEEEEECCCCcccc------------------ccccccccccccccc--cCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 188 SMSPIVHIVDVGSGTMES------------------LANVTEIHDGLDFSA--ADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
+.|.+|++|.+....... +.............+ .-...|+..|.++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999986543322 000000000000000 1124799999999999999988886 4
Q ss_pred CCeEEEEECCCCeeeEE---Eecc-----CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc------------
Q 011179 248 DDCIYVYDLEANKLSLR---ILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK------------ 307 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~---~~~h-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------ 307 (491)
|=.|.+|+++--..... ++.+ ..-|++..|+|...++++..+..|+|++.|+|....-..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 66799999865432222 2222 245888999988899999999999999999982211111
Q ss_pred eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEE
Q 011179 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
...-+..-...|..+.|+++|+++++-.. -+|++||+.... +++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---------------------------------~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---------------------------------KPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---------------------------------CcceE
Confidence 11112223456788999999999997643 479999996532 45555
Q ss_pred EeCCceeEe---------eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE-Eeec--------------------
Q 011179 388 YKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALK-------------------- 437 (491)
Q Consensus 388 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-------------------- 437 (491)
+.-|..... .+--.|..+|+.++.++++|+..+.+++|++..|... .++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 554432211 1111234457778899999999999999996554221 0000
Q ss_pred cC-------------CCCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 438 YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 438 ~h-------------~~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
+. ...|...+|+|..+.+|.+..+. ++|+
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 00 12355678999999888887654 5554
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3.5e-17 Score=146.85 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=159.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 216 (491)
..|+.++.||.+.|.+-.. ++.+ ....|.+.|.+-.|+|||.-|++++.||.|++|.-. |-.......
T Consensus 76 d~~~i~s~DGkf~il~k~~--rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q------- 143 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA--RVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ------- 143 (737)
T ss_pred ceEEEEcCCceEEEecccc--hhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh-------
Confidence 4688888999998887543 2333 335677899999999999999999999999999854 322211110
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEE
Q 011179 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~i 296 (491)
...+|.|++|.|+.+.++.+. .+.+.|=.+.....+.+.+.|.+-|.++.|+ +..+++++|+.|-..++
T Consensus 144 ---------~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 144 ---------NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred ---------cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 112899999999988776654 4568888888888888899999999999998 77899999999999999
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
||. .+..+..-..|.-+|++++|.|+ ..++.++.. ++++=..+
T Consensus 213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~------------------------------ 255 (737)
T KOG1524|consen 213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR------------------------------ 255 (737)
T ss_pred ecc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCC------------------------------
Confidence 997 67888888889999999999999 666666543 34421111
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEE
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 425 (491)
....|..+||+||..+++|+..|.+.+-
T Consensus 256 ---------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 256 ---------------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 1234556778899999888888876543
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.3e-15 Score=145.40 Aligned_cols=237 Identities=17% Similarity=0.204 Sum_probs=159.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC---CCeEEEEECCCCccccccccccccccccccccC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.+||.+.... ..+. .+...+...+|+|||+.|+..+. +..|.+|++.+++...+.....
T Consensus 179 ~~l~~~d~dg~~~-~~lt---~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCC-EEee---cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 3789999876532 2221 23347899999999999987653 4579999998876544332211
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-CCeEEEEe
Q 011179 223 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWD 298 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd 298 (491)
.+...+|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+ |+++.|+..+. ++...+|.
T Consensus 244 ------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 244 ------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred ------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEE
Confidence 23457999999988865 3344 5999999887654 444555677889998 77887766665 45555554
Q ss_pred cccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
+.. .+.....+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-------------------------- 366 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-------------------------- 366 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--------------------------
Confidence 321 122233444444456678899999999876643 358888887632
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCe---EEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
...+.... ...+|.|+|||++|+.++.++. ++++++ +|.....+.+|.+.+...+|+|-
T Consensus 367 ---------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 367 ---------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ---------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 11121110 1135688999999999988764 677787 56667778888889999999983
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=9.2e-17 Score=144.22 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=176.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-------CCCeEEEEECCCeEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIVH 194 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~~~d~~i~ 194 (491)
.|...|.|+.|+.....+.+++.+-.+.-|++.+. .......+... -.+.+-.-+ ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEE
Confidence 45666779999988876766654444444454432 22221111111 011111111 225788889999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
|.+-. ++..... ..|.+.+.+-.|+|||.-|++++.||.|++|.- +|-+..++.....+|.|
T Consensus 89 il~k~-~rVE~sv----------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 89 ILNKS-ARVERSI----------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred Eeccc-chhhhhh----------------hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 98743 3332221 147779999999999999999999999999984 44444445567789999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|.|..++.+++.+. .+.|=.+. ....+..+..|.+-|.++.|++..+++++|+.|-..++||-..
T Consensus 151 ~~W~p~S~~vl~c~g~--h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------- 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG--HISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------- 217 (737)
T ss_pred EEECCCCCceEEecCC--eEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-------
Confidence 9998666666666554 45554454 4455667889999999999999999999999999999999754
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
+.+..-..|... + .+.+|.|+ +.++.++.. +++
T Consensus 218 ----------------------------~~Lf~S~~~ey~--I----TSva~npd-~~~~v~S~n-t~R----------- 250 (737)
T KOG1524|consen 218 ----------------------------ANLFTSAAEEYA--I----TSVAFNPE-KDYLLWSYN-TAR----------- 250 (737)
T ss_pred ----------------------------cccccCChhccc--e----eeeeeccc-cceeeeeee-eee-----------
Confidence 333333334322 2 23356667 566655542 233
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
.-+...+.|..++||+||..++.|+..|.|.+
T Consensus 251 ~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 251 FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 11234678999999999999999999998765
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=6.9e-16 Score=138.76 Aligned_cols=278 Identities=17% Similarity=0.196 Sum_probs=180.8
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEE-----CCCCCeEEEEECCCeEEEEECC
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~-----sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
.+....++-.|++|+..- ...+++|+...+..+...+.... ......|-+| .|.+--|+.+-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455666666777877653 34688998875422222111110 0112333444 3566678888888999998876
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 278 (491)
..+..++....... .+..++++.|-|. ...++++-.+|.+++||.. +....+...|.
T Consensus 204 ~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~ 261 (636)
T KOG2394|consen 204 NFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQ 261 (636)
T ss_pred hhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCccc
Confidence 64433333222111 1238999999994 4467777789999999972 11122222221
Q ss_pred -cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 279 -DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 279 -~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
.+++..+.... |--. ....++..+.--.+.|..++|+|||++||+.+.||.++|+|..++......
T Consensus 262 ~~k~~~~f~i~t-------~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--- 328 (636)
T KOG2394|consen 262 ALKDGDQFAILT-------SKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM--- 328 (636)
T ss_pred ccCCCCeeEEee-------eecc---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH---
Confidence 13444444332 2111 022455555555668999999999999999999999999999884432111
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 437 (491)
+.....+ .+.+|||||+||++|++|--|.||.+..++.++.-+
T Consensus 329 ---------------------------------kSYFGGL----LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 329 ---------------------------------KSYFGGL----LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred ---------------------------------Hhhccce----EEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 1111122 334677799999999999999999999999999999
Q ss_pred cCCCCeeeeEecCC-----------------------------------C-------------CeEEEEeCCCcEEEEcC
Q 011179 438 YHTSPVRDCSWHPS-----------------------------------Q-------------PMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 ~h~~~v~~~~~sp~-----------------------------------~-------------~~l~s~~~Dg~v~iw~~ 469 (491)
+|.+.|..|+|.|- + -.|.+.+.|-.+.+||+
T Consensus 372 GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDl 451 (636)
T KOG2394|consen 372 GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDL 451 (636)
T ss_pred ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEec
Confidence 99999999999830 1 14778888999999999
Q ss_pred CCCCCCC
Q 011179 470 PGNGEAA 476 (491)
Q Consensus 470 ~~~~~~~ 476 (491)
......+
T Consensus 452 teD~L~~ 458 (636)
T KOG2394|consen 452 TEDVLVP 458 (636)
T ss_pred chhhccc
Confidence 8876544
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.8e-16 Score=131.63 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=173.8
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
.+|+|.+|++|...+|++.....|.||.......-..... ...|...|+.+.|+|..+.|++++.|.
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-------------ls~Hd~~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-------------LSEHDKIVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceecee-------------hhhhCcceeEEeecCCCCceeEccCCC
Confidence 3799999999999999999999999999887763222221 224666899999999999999999999
Q ss_pred eEEEEEC-CCC--eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 250 CIYVYDL-EAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
.-+||.. ..+ ++...+..++...+++.|+ |.++.|++|+....|.||-.+..+.=......-..+.+.|++++|+|
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 9999998 433 3455667889999999998 88999999999999999988633322222333455778899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
++-+|++|+.|+.++++..--...... .. +..-.-..+.++.+..+.... .......|
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdek----pa------------p~pWgsk~PFG~lm~E~~~~g------gwvh~v~f 214 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEK----PA------------PTPWGSKMPFGQLMSEASSSG------GWVHGVLF 214 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccC----CC------------CCCCccCCcHHHHHHhhccCC------CceeeeEe
Confidence 999999999999999986421110000 00 000001111223333332111 12233467
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCc-EEEeeccCCCCeeeeEecCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~ 451 (491)
+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 7799999999999999999986654 34444433467777777654
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.1e-14 Score=134.55 Aligned_cols=308 Identities=16% Similarity=0.140 Sum_probs=184.6
Q ss_pred CEEE-EEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc
Q 011179 137 SLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
++++ +-..+|.|.|.|..+.+.+.++..... .-..+.|+||++++.+++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 4454 455689999999999877776654322 23457899999999999999999999999998765544322
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEecc-------CCCeeEEEEecCCCCEEEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s 287 (491)
...++++++||+++++++ ..+.+.++|.++.+.+..+... ...+..+..+|....++++
T Consensus 79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 567899999999998776 5899999999999998887632 3456778777444445555
Q ss_pred EeCCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCcccccCCCccc----
Q 011179 288 GSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSY---- 361 (491)
Q Consensus 288 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~---- 361 (491)
.-+.+.|.+-|.. ....+ ..............|+|++++++++ ..++.|-++|..+.........+....
T Consensus 146 lkd~~~I~vVdy~----d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 146 LKDTGEIWVVDYS----DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp ETTTTEEEEEETT----TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred EccCCeEEEEEec----cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence 5556888887875 22222 2232334556788999999987664 456689999988765443332221111
Q ss_pred ----------eeeeeeec------CCCCCcc-ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE----ecCC
Q 011179 362 ----------EWDYRWMD------YPPQARD-LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----SHDS 420 (491)
Q Consensus 362 ----------~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg 420 (491)
.|...-.. ...+... ......+.+..+...... .-...+|+++++.+. ...+
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT
T ss_pred ccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCc
Confidence 12111000 0000000 111223344444433211 112347899999988 4458
Q ss_pred eEEEEECCCCcEEEeeccC-CCCeeeeEecCCCCeEEEEeCC--CcEEEEcCCCCCCC
Q 011179 421 CVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWD--GDVVRWEFPGNGEA 475 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~D--g~v~iw~~~~~~~~ 475 (491)
.|.++|..+.+.+..+... ...+..+.|++||+.+..+.++ |.|.+||..+.++.
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999999888887522 2359999999999966655444 36999998876544
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.3e-17 Score=145.65 Aligned_cols=241 Identities=19% Similarity=0.221 Sum_probs=165.0
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~ 241 (491)
...+|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+....+. .||...|.++.|-| +.+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeE
Confidence 457899999999999999999999999999999987555433322 37888999999999 5678
Q ss_pred EEEEeCCCeEEEEECCC----------CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC---Cce
Q 011179 242 LVAGSSDDCIYVYDLEA----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKP 308 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~ 308 (491)
+++|..|..|+++|+.. ......+..|...|..++-.|...+.+.+++.||+|+-+|++....- ...
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 99999999999999984 22344556899999999998666699999999999999999842100 001
Q ss_pred ---eeEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCC-CccceeeeeeecCCCCCccccCCCCc
Q 011179 309 ---AGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 309 ---~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+..+....-...++.++|. ..+|++|+.|-..++||.+.........-. ...+..+. .
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~-----------------~ 252 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC-----------------R 252 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc-----------------c
Confidence 1111122234678889985 457899999999999997653221110000 00000000 1
Q ss_pred eEEEEe-CC-----ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 384 SVATYK-GH-----SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 384 ~~~~~~-~~-----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
.+.-|. +| ........++....|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 111111 00 011222334455578999988888877788999999887765443
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.7e-15 Score=144.97 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=145.7
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEe
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 266 (491)
+..|.+||.+......+. .|...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +.
T Consensus 183 ~~~i~i~d~dg~~~~~lt-----------------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~ 244 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVN-----------------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA 244 (429)
T ss_pred eEEEEEECCCCCCceEec-----------------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee
Confidence 368999998765432211 133368899999999999887653 479999998875422 22
Q ss_pred ccCCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEe
Q 011179 267 AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd 344 (491)
...+....++|+ |+++.|+.+ +.+|.+.||.+.. .......+..+...+....|+|||+.|+..+ .++...||+
T Consensus 245 ~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 245 SFRGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred cCCCccCceeEC-CCCCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 223334578998 788877765 4688776664431 2233455666777788999999999877655 578888888
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 424 (491)
+.... .....+ .+. . +.+.|+|||++|+..+.++ +.+
T Consensus 321 ~~~~~---------------------------------~~~~~l-~~~------~--~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 321 MSASG---------------------------------GGASLV-GGR------G--YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred EECCC---------------------------------CCeEEe-cCC------C--CCccCCCCCCEEEEEcCCC-EEE
Confidence 75421 111111 111 0 3457899999999887765 666
Q ss_pred EECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 425 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
||+.+++.......+ ....++|+|||++|++++.+|.+.+|.+.
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 999988765333322 34678899999999999999988888763
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.6e-14 Score=122.63 Aligned_cols=318 Identities=13% Similarity=0.101 Sum_probs=191.1
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~ 202 (491)
+..+..++|++.-..+|++..|-.|++|+-... .... .....+..|++++|-|.+ +.|++|+. +-|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 456788999997777899999999999997763 2222 222334479999999976 56666664 558999875321
Q ss_pred -cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 203 -MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
.......-. ..........|| .+|++++|.+||..+++++. +..|.|||..++..+.-.....+.++-+.|+ |
T Consensus 174 n~~r~~~~~s---~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMS---THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred cccccccccc---ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 111111111 111112223355 58999999999999999875 5779999999988765554556788999998 8
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++.+|++++-|+..++|+.. ..-......-..+.|...+|+|+|++|+.... |.-++|.+.-......... ..
T Consensus 249 dgd~lfaAt~davfrlw~e~----q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~--~~ 321 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQEN----QSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR--PQ 321 (445)
T ss_pred CCCEEEEecccceeeeehhc----ccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC--cc
Confidence 89999999999999999654 22222223334458999999999998765543 2345555543222111100 00
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC--------eEEEEECCCCcE
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--------CVYVYDLVSGEQ 432 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~ 432 (491)
..+ ......+... +....+. ..+-.-.-+++|.|.|.+||+.-..+ .|.+||.+..-.
T Consensus 322 ~~k---~~lliaDL~e--------~ti~ag~---~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 322 SIK---RVLLIADLQE--------VTICAGQ---RLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred cce---eeeeeccchh--------hhhhcCc---ccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 000 0000000000 0001110 01111123447788999999876644 367788655433
Q ss_pred EEeec-c--CCCCeeeeEecC---CCCeEEEEeCCCcEEEEcCCC
Q 011179 433 VAALK-Y--HTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~-~--h~~~v~~~~~sp---~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+.... + ......-++|+| ++.+|..+=..|.+.-|.+.-
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32221 1 112245566766 455676676678888777643
No 214
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=130.16 Aligned_cols=195 Identities=18% Similarity=0.275 Sum_probs=148.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC-CCCEEEEEeCCCeEEEEecccccCCCceeeEecccc-C
Q 011179 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-E 317 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~ 317 (491)
..+|++..+|.|++||..+++.+..++++...++.+.|... .++.+.+++.||+|++||+|... ......+..+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCC
Confidence 46899999999999999999999999999999999999743 67899999999999999999542 23334445555 4
Q ss_pred cEEEEEEcCCCCEEEEeeC----CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE-eCCc
Q 011179 318 GITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHS 392 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (491)
+..+++..-+++++++|.. +-.|.+||+|..+. .+..+ ..|.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---------------------------------~l~~~~eSH~ 165 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ---------------------------------LLRQLNESHN 165 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccc---------------------------------hhhhhhhhcc
Confidence 6677777667778888754 56799999998542 22222 2344
Q ss_pred eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc----EEEeeccCCCCeeeeEecCCC-CeEEEEeCCCcEEEE
Q 011179 393 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRW 467 (491)
Q Consensus 393 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~v~iw 467 (491)
...+ ...|.|. +.++|++|+.||.|.+||+.... ++.++ .|...|..+.|..++ +.|.+-+..+...+|
T Consensus 166 DDVT--~lrFHP~---~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 166 DDVT--QLRFHPS---DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIY 239 (376)
T ss_pred Ccce--eEEecCC---CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEE
Confidence 3333 3345554 78899999999999999987542 22333 477889999999877 358888899999999
Q ss_pred cCCCCCCC
Q 011179 468 EFPGNGEA 475 (491)
Q Consensus 468 ~~~~~~~~ 475 (491)
+++.+.+.
T Consensus 240 ele~~~~~ 247 (376)
T KOG1188|consen 240 ELEDGSEE 247 (376)
T ss_pred EccCCChh
Confidence 99988744
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.7e-15 Score=144.27 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=173.5
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEEEEEeCC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~d 248 (491)
....+.|+|-...++++...-.|+|||.+.++....+...... ...|+.+.+-. |...+++|+.|
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-------------~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-------------DTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-------------CCccceeeeecccchhheeeeccC
Confidence 3566888998889999988889999999988775444332211 12688888875 55689999999
Q ss_pred CeEEEEECCC-----CeeeEEEec-------cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-cc
Q 011179 249 DCIYVYDLEA-----NKLSLRILA-------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH 315 (491)
Q Consensus 249 g~i~vwd~~~-----~~~~~~~~~-------h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~ 315 (491)
|.|+||+-.. .+.+..+.+ -.+.-.-+.|....| +|++++.-..|+|||.. ....+..+. +.
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~----~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH----KEQVVADIPYGS 1207 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc----cceeEeecccCC
Confidence 9999997432 233332221 111124456764444 45555557899999997 444444433 33
Q ss_pred cCcEEEEEEc-CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee
Q 011179 316 LEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
...|+++.-+ +.|+.+++|..||.|++||.+.... +..+..++.|...
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------------------ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------------------DSLVCVYREHNDV 1256 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCc-------------------------------cccceeecccCCc
Confidence 4456666543 3479999999999999999987432 2467777777766
Q ss_pred EeeEEEEecccccCCCc-EEEEEecCCeEEEEECCCCcEEE--eeccCC--C-CeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 395 RTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVA--ALKYHT--S-PVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~--~-~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
..+....+.. +|- -|++|+.||.|++||++...... .+..|. + ..+++..+++.+.+|+|+. +.|+||+
T Consensus 1257 ~~Iv~~slq~----~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1257 EPIVHLSLQR----QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccceeEEeec----CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 5555554443 232 59999999999999998743222 222333 3 5999999999999999998 9999999
Q ss_pred CCCCCCC
Q 011179 469 FPGNGEA 475 (491)
Q Consensus 469 ~~~~~~~ 475 (491)
+.+....
T Consensus 1332 ~~G~~l~ 1338 (1387)
T KOG1517|consen 1332 LSGEQLN 1338 (1387)
T ss_pred cChhhhc
Confidence 9876543
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=8.6e-15 Score=139.88 Aligned_cols=237 Identities=21% Similarity=0.247 Sum_probs=153.3
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|.+.. ....+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+....
T Consensus 176 ~~L~~~D~dG~-~~~~l~---~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQSAL---SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceEec---cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 46777777543 222222 334478899999999999987753 46999999988654332211
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCCeEEE--EECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCCeEEEEe
Q 011179 223 DGGYSFGIFSLKFSTDGRELVA-GSSDDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWD 298 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~-~~~dg~i~v--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd 298 (491)
+.+.+.+|+|||+.|+. .+.+|...| +|+..+. ...+..+........|+ ++++.|+..+ .+|...+|.
T Consensus 240 -----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 -----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred -----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 13557899999998875 566766555 4555544 44555566566778998 7787776555 456777776
Q ss_pred cccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
+... .+ ....+..+........|+|+|++|+..+.++ .|.+||+.+..
T Consensus 313 ~~~~--~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-------------------------- 363 (427)
T PRK02889 313 MPAS--GG-AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-------------------------- 363 (427)
T ss_pred EECC--CC-ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--------------------------
Confidence 5421 12 2222222223344678999999998777654 59999987632
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
...+.... ....|.|+|||+.|+..+.++ .+++.++ ++.....+..+.+.+...+|+|-
T Consensus 364 ---------~~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 ---------VTALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------eEEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 11111111 113568899999998887654 4667677 56666677667788899999884
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=5.3e-16 Score=139.51 Aligned_cols=187 Identities=19% Similarity=0.257 Sum_probs=135.0
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec--CCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCcccccccc
Q 011179 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 133 s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
.|+|--|++|...|.|.+.|.... .+.++... .-.+..|+++.|-|.+ ..++++-.+|.+.++|..--........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 445667888988999999887652 22221111 1123479999999965 4556667789999997632111111111
Q ss_pred ccccccccccccCCC------------CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 210 TEIHDGLDFSAADDG------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~------------~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
....++-.|...... --.+.|..++|+|||++||+.+.||.++|+|..+.+++..++..-+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 111111111111110 01237889999999999999999999999999999888777777789999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
+ ||+++|++|++|-.|.||.+. ..+.+..-.+|.++|..++|.
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred c-CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeec
Confidence 8 899999999999999999998 888899999999999999998
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.8e-14 Score=138.16 Aligned_cols=234 Identities=21% Similarity=0.213 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.+||.+... ...+. .+...+...+|+|||+.|++.+.+ ..|.+|++.+++...+....
T Consensus 184 ~~l~i~D~~g~~-~~~lt---~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGYN-PQTIL---RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCCC-ceEee---cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 468999986542 22222 234468899999999999988743 47999999887654332211
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCCe--EEE
Q 011179 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKV 296 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~--i~i 296 (491)
....+.+|+|||+.|+. .+.+| .|++||+.+++. ..+..+.......+|+ ++++.|+..+ .+|. |.+
T Consensus 248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 13446899999997764 44444 699999988875 4455565556788998 7788777665 4555 555
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCCcccccCCCccceeeeeeecCCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. .+. ...+..+......++|+|+|+.|+..+.++ .|.+||+.+...
T Consensus 321 ~dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------------------- 372 (433)
T PRK04922 321 VAAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------------------- 372 (433)
T ss_pred EECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----------------------
Confidence 5654 222 233332334455789999999998765443 589999876321
Q ss_pred CccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCcEEEeeccCCCCeeeeEecC
Q 011179 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 450 (491)
..+.... ....+.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 373 ------------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 373 ------------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 1111110 11245788999988877663 468888884 555666666677888899987
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5e-14 Score=135.36 Aligned_cols=234 Identities=18% Similarity=0.213 Sum_probs=154.4
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC---CCeEEEEECCCCccccccccccccccccccccC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|.+... ...+ ..+...+...+|+|||+.|+..+. +..|.+||+.+++...+..
T Consensus 182 ~~l~~~d~dg~~-~~~l---t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYL---TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCC-cEEE---ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 378889986542 2222 234457999999999999998764 4689999998886543322
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-CC--eEEE
Q 011179 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~i~i 296 (491)
+...+...+|+|||+.|+. .+.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. +| .|.+
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 1124667899999998764 44444 488889988765 4565666667789998 77887776653 33 5777
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+....
T Consensus 319 ~d~~-----g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------ 369 (435)
T PRK05137 319 MNAD-----GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------ 369 (435)
T ss_pred EECC-----CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence 7764 23334444445556778899999999877653 357778875421
Q ss_pred CccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC------CeEEEEECCCCcEEEeeccCCCCeeeeE
Q 011179 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSGEQVAALKYHTSPVRDCS 447 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~ 447 (491)
...+.... ....+.|+|||+.|+..+.+ ..++++|+..+.. ..+. ..+.+...+
T Consensus 370 -----------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~ 429 (435)
T PRK05137 370 -----------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPA 429 (435)
T ss_pred -----------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcc
Confidence 11111100 12456889999998876543 3688889866554 3444 345577888
Q ss_pred ecCC
Q 011179 448 WHPS 451 (491)
Q Consensus 448 ~sp~ 451 (491)
|+|-
T Consensus 430 Wsp~ 433 (435)
T PRK05137 430 WSPL 433 (435)
T ss_pred cCCC
Confidence 8874
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.6e-13 Score=131.03 Aligned_cols=215 Identities=15% Similarity=0.089 Sum_probs=140.1
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEEEecc
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~h 268 (491)
.|.+||.+......+.. +...+.+.+|+|||+.|+..+ .+..|++||+.+++.. .+...
T Consensus 180 ~l~~~d~dg~~~~~lt~-----------------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~ 241 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-----------------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 241 (429)
T ss_pred eEEEEcCCCCCCEEeec-----------------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCC
Confidence 68899887665433322 122688999999999988754 2457999999887643 23333
Q ss_pred CCCeeEEEEecCCCCEEEEE-eCCC--eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-CcEEEE-
Q 011179 269 TSDVNTVCFGDESGHLIYSG-SDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLW- 343 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~i~iw- 343 (491)
.+.+..+.|+ |+++.|+.. +.+| .|.+||+. .+. ...+..+...+....|+|||+.|+..+.+ +...||
T Consensus 242 ~~~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~----tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 242 PRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CCCcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECC----CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 4445678998 677766654 4455 58888986 333 34455555667889999999988877654 444444
Q ss_pred -eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---
Q 011179 344 -DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--- 419 (491)
Q Consensus 344 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--- 419 (491)
|+.+.. ...+.... .....+.|||||++|+..+.+
T Consensus 316 ~d~~~g~-----------------------------------~~~lt~~~------~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 316 VNINGGA-----------------------------------PQRITWEG------SQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred EECCCCC-----------------------------------eEEeecCC------CCccCEEECCCCCEEEEEEccCCC
Confidence 554421 11111111 011245688899999876653
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCc---EEEEcCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~---v~iw~~~~~~ 473 (491)
..|++||+.+++.. .+.. ........|+|||++|+.++.++. +.++++....
T Consensus 355 ~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 355 QHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred ceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 36899999888654 3332 123457889999999999888765 6777876544
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=4.5e-13 Score=113.34 Aligned_cols=280 Identities=14% Similarity=0.201 Sum_probs=179.4
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce--eEEEEEECCCCCeEEE-EECC------CeEEEE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVY-ASMS------PIVHIV 196 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~-~~~d------~~i~iw 196 (491)
....++|+.|..-+++|..+| .+||+.+.- .+......+.+ .+..+-| ..++|+. |+.+ +.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999998776 899998752 11111111111 2222222 3455554 3332 479999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEecc--CCCee
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVN 273 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h--~~~v~ 273 (491)
|=.......... ...+|.++.+.++ .|++.- .+.|+||... +.+.++.+... ...+.
T Consensus 81 DD~k~~~i~el~-----------------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 81 DDLKERCIIELS-----------------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred ecccCcEEEEEE-----------------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 943333322222 1227999999866 456554 5679999997 45555555432 23334
Q ss_pred EEEEecCCCCEEEE-EeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCc-EEEEeCCCCCCc
Q 011179 274 TVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSN 351 (491)
Q Consensus 274 ~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~ 351 (491)
+++-. .+..+|+. |-.-|.|+|-|+..... .....+.+|.+.|.|++.+-+|..+|++|..|+ |+|||..++
T Consensus 141 ~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--- 214 (346)
T KOG2111|consen 141 SLCPT-SNKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--- 214 (346)
T ss_pred eecCC-CCceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---
Confidence 44332 23344444 34569999999973221 134678899999999999999999999999998 899999984
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
..+..++...... ..++++|||+..+|++++..|+|+||.+....
T Consensus 215 -------------------------------~~l~E~RRG~d~A----~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 -------------------------------TLLQELRRGVDRA----DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -------------------------------cEeeeeecCCchh----eEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 4555554333222 23566888899999999999999999876422
Q ss_pred ---E---------------------EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 432 ---Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 ---~---------------------~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
. +..++-..++..-++|-.+-+.++..+.||..+-+.+...
T Consensus 260 ~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 260 NTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred CCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 1 0111222455666778777566777778898776666544
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.6e-14 Score=119.85 Aligned_cols=204 Identities=21% Similarity=0.218 Sum_probs=137.6
Q ss_pred CCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEE-----------EEEeecCCCceeEEEEEECCCCCeEEEEEC-
Q 011179 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM- 189 (491)
Q Consensus 123 h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~- 189 (491)
-...|.|++|-|.+ +-|++|+..| |.||..+..-.. .++....+| ..|+++.|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 35679999999975 5788887665 999987642111 112233344 48999999999999999886
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
|..|.|||.+++....+.... .+.+.-+.|||||.+|+++.-|+..++|+........+.....
T Consensus 217 sssi~iWdpdtg~~~pL~~~g----------------lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKG----------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred cceEEEEcCCCCCcccccccC----------------CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence 568999999999876655211 1268889999999999999999999999765544333344455
Q ss_pred CCeeEEEEecCCCCEE-EEEeCCCeEEEEecccccCCCc-----------eeeEec-----c----ccCcEEEEEEcCCC
Q 011179 270 SDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----------PAGVLM-----G----HLEGITFIDSRGDG 328 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~-----------~~~~~~-----~----~~~~i~~~~~~~~~ 328 (491)
+.|...+|+ |+|+.| ++.+.. -++|.+........ .+..+. . -.+++.+++|.|.|
T Consensus 281 grvqtacWs-pcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 281 GRVQTACWS-PCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred Cceeeeeec-CCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 699999998 556544 444433 33444321110000 000110 0 14678899999999
Q ss_pred CEEEEeeCCC--------cEEEEeCCC
Q 011179 329 RYLISNGKDQ--------AIKLWDIRK 347 (491)
Q Consensus 329 ~~l~s~~~dg--------~i~iwd~~~ 347 (491)
.+|++.-..+ .|.+||.+.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 9999876543 366677665
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.5e-13 Score=123.38 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=180.1
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-----EC-----CCeE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-----SM-----SPIV 193 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----~~-----d~~i 193 (491)
..++...++|++|+++|.+. +..++|++..++..+.... .. .++++.|+|-+.+|.+- .. ...+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~----~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE----LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec----cc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 34478889999999888774 5689999998874222211 12 58999999999998862 11 2357
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
.+|+++++.....+.... . .-++..|++|.. |++--..+.+++|++...+.+.. .-|...|+
T Consensus 108 ~v~~vet~~~~s~~q~k~-Q---------------~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~ 169 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKM-Q---------------NGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQH-KLSVSGIT 169 (566)
T ss_pred eeeeeccceehhheehhh-h---------------cCcccccccchh-hhhhhhcceEEEEecCCccceee-eeecccee
Confidence 899998844332222111 1 114678888775 34334456789998877443222 23566677
Q ss_pred EEEEecC-CCCEEEE-----EeCCCeEEEEecccccC-------------------------------------------
Q 011179 274 TVCFGDE-SGHLIYS-----GSDDNLCKVWDRRCLNV------------------------------------------- 304 (491)
Q Consensus 274 ~~~~~~~-~~~~l~s-----~~~dg~i~iwd~~~~~~------------------------------------------- 304 (491)
.+.++|. ....+++ .+.-+.|+||.......
T Consensus 170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence 7777643 2333332 23344566665430000
Q ss_pred ---------CCceeeEeccccCcEEEEEEcCCCCEEEE--eeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCC
Q 011179 305 ---------KGKPAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 305 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
.+.....-....++|.++.|+|+++.+++ |-+-..+.|+|++.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------------------------- 303 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------------------------- 303 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--------------------------
Confidence 00011111113578999999999987665 44566788888875
Q ss_pred CccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCcEEEeeccCCCCeeeeEecC
Q 011179 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 450 (491)
..+..+.... + ....|+|.|++|+.++.+ |.|-|||+.+.+++..+.... -+-+.|+|
T Consensus 304 ---------~~v~df~egp--R------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P 364 (566)
T KOG2315|consen 304 ---------KPVFDFPEGP--R------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP 364 (566)
T ss_pred ---------CEeEeCCCCC--c------cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC
Confidence 3444333221 1 122477799999987764 799999999999998887543 46679999
Q ss_pred CCCeEEEEeC------CCcEEEEcCCCCC
Q 011179 451 SQPMLVSSSW------DGDVVRWEFPGNG 473 (491)
Q Consensus 451 ~~~~l~s~~~------Dg~v~iw~~~~~~ 473 (491)
||++|+|++. |+.++||++.+..
T Consensus 365 dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 9999998864 7889999998754
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.9e-13 Score=129.91 Aligned_cols=215 Identities=20% Similarity=0.163 Sum_probs=141.0
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEec
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~ 267 (491)
..|.+||........+.. +...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~-----------------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILR-----------------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVAS 245 (433)
T ss_pred EEEEEECCCCCCceEeec-----------------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eecc
Confidence 368899986554332221 2236888999999999998764 346999999887653 3334
Q ss_pred cCCCeeEEEEecCCCCEE-EEEeCCC--eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCc--EE
Q 011179 268 HTSDVNTVCFGDESGHLI-YSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IK 341 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~ 341 (491)
+.+...++.|+ ++++.| ++.+.+| .|.+||+. .+. ...+..+.......+|+|||+.|+..+. +|. |.
T Consensus 246 ~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~----~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 246 FRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLG----SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECC----CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 45555678998 677655 4556665 58889986 333 4455556555678899999998887764 444 56
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC-
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS- 420 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg- 420 (491)
++|+.+... ...++.+.. ...+.|||||++|+..+.++
T Consensus 320 ~~dl~~g~~---------------------------------~~lt~~g~~--------~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 320 RVAASGGSA---------------------------------ERLTFQGNY--------NARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred EEECCCCCe---------------------------------EEeecCCCC--------ccCEEECCCCCEEEEEECCCC
Confidence 666654210 001111111 12457889999998776543
Q ss_pred --eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC---CcEEEEcCCCC
Q 011179 421 --CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 472 (491)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D---g~v~iw~~~~~ 472 (491)
.|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.+.
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6999999888765 443 33345678999999987766553 45777887654
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=5.7e-14 Score=138.30 Aligned_cols=261 Identities=13% Similarity=0.144 Sum_probs=167.9
Q ss_pred cCCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCccc-cccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 165 AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
.+.|...|..++.++.. .++++|+.||+|++|+...-... ..... .+.+.. ....+.++...+.+..+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS-----~ltys~-----~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS-----ELTYSP-----EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee-----eEEEec-----cCCceEEEEeccCCCeE
Confidence 35666678888887765 99999999999999998643221 11100 011111 12378889999999999
Q ss_pred EEEeCCCeEEEEECCCCe-------eeEEEecc-CCCe-eEEEEecCCCC-EEEEEeCCCeEEEEecccccCCCceeeEe
Q 011179 243 VAGSSDDCIYVYDLEANK-------LSLRILAH-TSDV-NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~-------~~~~~~~h-~~~v-~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
|+++.||.|.+.+++... +.+....+ .+.+ ..-+|...... .++.+..-+.|..||++.. ..+..+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~----~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR----HDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh----hhHHhh
Confidence 999999999999997621 11111112 2233 33344333344 7888889999999999833 222222
Q ss_pred --ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC
Q 011179 313 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 313 --~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
....+.|++++.+|.+.+++.|...|.+.+||+|-. .++..+.-
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------------~~i~sw~~ 1235 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------------VPILSWEH 1235 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------------ceeecccC
Confidence 234578999999999999999999999999999863 23333332
Q ss_pred CceeEeeEEEEecccccCCCcEEEEEe--cCCeEEEEECCCCcEEEeeccC-------------------CCCeeeeEec
Q 011179 391 HSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQVAALKYH-------------------TSPVRDCSWH 449 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h-------------------~~~v~~~~~s 449 (491)
... ..+..+..++. .+.....++++ ..+.|.+|++.+|.+...+... .-....+.+.
T Consensus 1236 P~~-~~i~~v~~~~~-~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1236 PAR-APIRHVWLCPT-YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred ccc-CCcceEEeecc-CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 111 22222223322 22334444444 4678999999998765555322 1112233444
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 450 PSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 450 p~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.-+..+.+|+.|..|+.||.......
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcccc
Confidence 45568999999999999999877644
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=133.42 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=189.4
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 242 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l 242 (491)
+..|.+.|+.+.|+..|..|++++.|..|.+||+..+.....+ ..||...|....|-| +.+.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f---------------~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF---------------ESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc---------------ccccccchhhhhccCCCCCcCc
Confidence 4578889999999999999999999999999999887654332 236777888888888 44679
Q ss_pred EEEeCCCeEEEEECCCCee---eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC--
Q 011179 243 VAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-- 317 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 317 (491)
++++.||.|++=.+..... ...+..|.++|..++.-|....-|.+++.|+.+.-+|+++........ .-..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER 281 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence 9999999999887754332 345668999999999988888999999999999999998554333322 2223333
Q ss_pred -cEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 318 -GITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 -~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
....++..|... .+++++.|..+++||.+........ ..+..+..+....
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE 333 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence 567888888654 8999999999999999885433221 1122222221111
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCC--C----------cEEEe-eccCCC--CeeeeEe-cCCCCeEEEEe
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G----------EQVAA-LKYHTS--PVRDCSW-HPSQPMLVSSS 459 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~~~~~-sp~~~~l~s~~ 459 (491)
.-...+...+|+.++.-|+++..|-.|+++.-.- | ..+.. +++|.. .|..+-| -|...++++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 1111223346666777788888888899995432 2 22233 678864 4677765 47788999999
Q ss_pred CCCcEEEEcCCCCC
Q 011179 460 WDGDVVRWEFPGNG 473 (491)
Q Consensus 460 ~Dg~v~iw~~~~~~ 473 (491)
+-|.|.||+-.+++
T Consensus 414 DCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGE 427 (559)
T ss_pred ccceEEEEecchhH
Confidence 99999999976654
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=3.1e-13 Score=114.71 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=176.3
Q ss_pred CCceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE-EEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~ 201 (491)
-..|.-+.|..|..+++ ....++.|.+|++...+-..++. .....+.+++|||||+.|+ +...+-.|.+|.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 45677889999987765 45678899999998775555543 3344799999999996655 5566889999999887
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC----------------------------------
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------------------------------- 247 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---------------------------------- 247 (491)
+...+...+. .+..++|+|||++.+..+.
T Consensus 125 ~~~~~~~pK~-----------------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 125 KGYLLPHPKT-----------------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred eeEEeccccc-----------------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence 7654443332 3455666666666555432
Q ss_pred --CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc----------------------
Q 011179 248 --DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---------------------- 303 (491)
Q Consensus 248 --dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------- 303 (491)
+..+.|||---.-.+..+ .-.-.+..+.|+ |.+++|+.|+.|+.+|+-+--+..
T Consensus 188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCcEEEEecchhhheeeee-eeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 122334443211111111 123468889998 889999999999998875421000
Q ss_pred -------------C---------------------CC------ceeeEeccccCcEEEEEEcCCCCEEEEeeC--CCcEE
Q 011179 304 -------------V---------------------KG------KPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIK 341 (491)
Q Consensus 304 -------------~---------------------~~------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~ 341 (491)
. .. ++...+....-.+.-++|++|..++++-.. -+.+-
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 0 00 000111112334667899999999888644 35799
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCe
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~ 421 (491)
+||++..+..... ... ..+... .|.|....|+.+.....
T Consensus 346 ~Wdlq~l~l~avL----------------------------------iQk---~piraf----~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 346 LWDLQNLKLHAVL----------------------------------IQK---HPIRAF----EWDPGRPRLVVCTGKSR 384 (447)
T ss_pred EEechhhhhhhhh----------------------------------hhc---cceeEE----EeCCCCceEEEEcCCce
Confidence 9999874322111 000 112222 34556777777777788
Q ss_pred EEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 422 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
+++|...-...+.. ....-.|..+.|..+|..++-.+.|-..
T Consensus 385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 99999755444433 3344689999999999999999988653
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.9e-14 Score=122.23 Aligned_cols=257 Identities=19% Similarity=0.193 Sum_probs=175.6
Q ss_pred eEEEEEECCCCC--eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 011179 171 TVTDTSLSPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~~~~sp~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d 248 (491)
.|..++|.-+++ .+...+.+..+..+.+..........- .........+|..++.. |+ .|++|-.+
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~----------~~~~~l~~~~I~gl~~~-dg-~Litc~~s 124 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD----------AKTVSLGTKSIKGLKLA-DG-TLITCVSS 124 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCcccccccc----------ccccccccccccchhhc-CC-EEEEEecC
Confidence 567777765553 333333555566665554443222100 00011123355555554 33 58888999
Q ss_pred CeEEEEECCCCe----eeEEEeccCCCeeEEEEecCCCCEEEEEeCC--CeEEEEecccccCCCceeeEeccc-------
Q 011179 249 DCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMGH------- 315 (491)
Q Consensus 249 g~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~------- 315 (491)
|.+.+|..+.+. .+..+.. ...+..+.-++....++++|+.. ..+++||+. ..+++..-..-
T Consensus 125 G~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle----~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 125 GNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE----QSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred CcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc----cceeeeeccCCCCccccc
Confidence 999999988443 2233333 35566777766778888999998 889999997 44433332211
Q ss_pred --cCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 316 --LEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 316 --~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.-.++.+.|-+. ...|+++..-+.+++||.+... .++..+.-.
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------------------------RPV~~fd~~ 246 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------------------------RPVAQFDFL 246 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------------------------cceeEeccc
Confidence 124677888887 7899999999999999998643 455555443
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe-eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
..... +....|++++|++|..-|.+..||++.++.+.. +++-.+.|+++..+|.+++|+++|-|..|+|+|+.
T Consensus 247 E~~is------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 247 ENPIS------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cCcce------eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 32222 224556899999999999999999999998877 88999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcce
Q 011179 471 GNGEAAPPLNKKR 483 (491)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (491)
+.........+.+
T Consensus 321 trkll~kvYvKs~ 333 (412)
T KOG3881|consen 321 TRKLLHKVYVKSR 333 (412)
T ss_pred cchhhhhhhhhcc
Confidence 8655444443333
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=9.7e-16 Score=135.42 Aligned_cols=231 Identities=17% Similarity=0.188 Sum_probs=183.5
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
..+.+.++.+|++|+.++..|.|..+|+.++.....+.+.+ .|.++.|..+.+++|++ ....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----------------tv~Dv~~LHneq~~AVA-QK~y 192 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-----------------TVRDVTFLHNEQFFAVA-QKKY 192 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-----------------hhhhhhhhcchHHHHhh-hhce
Confidence 46778999999999999999999999999998876665544 68889999888877776 4567
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
++|||- .|..+..++.| ..|..+.|. |..-+|++++..|.++.-|+. .++.+..+....+.+..+.-+|-...
T Consensus 193 ~yvYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 193 VYVYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAV 265 (545)
T ss_pred EEEecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccce
Confidence 999995 45555666554 578999997 777889999999999999998 88888888888888999999999889
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
+-+|...|+|.+|...... ++..+-.|.... .++++.++|
T Consensus 266 ih~GhsnGtVSlWSP~ske----------------------------------PLvKiLcH~g~V------~siAv~~~G 305 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKE----------------------------------PLVKILCHRGPV------SSIAVDRGG 305 (545)
T ss_pred EEEcCCCceEEecCCCCcc----------------------------------hHHHHHhcCCCc------ceEEECCCC
Confidence 9999999999999987632 333333344222 233677799
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
+|+++.+.|..++|||++.-..+.++.. ..+...+++|..| +++++....|.||.=
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 9999999999999999998887777654 4577889998766 334445567999963
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.8e-13 Score=129.33 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=143.2
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEecc
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h 268 (491)
.|.++|.+......+. .|...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+..+
T Consensus 183 ~l~~~d~dg~~~~~lt-----------------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~ 244 (435)
T PRK05137 183 RLAIMDQDGANVRYLT-----------------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNF 244 (435)
T ss_pred EEEEECCCCCCcEEEe-----------------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecC
Confidence 7888887655443222 13337899999999999888764 46899999988865 345566
Q ss_pred CCCeeEEEEecCCCCEE-EEEeCCCe--EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CC--cEEE
Q 011179 269 TSDVNTVCFGDESGHLI-YSGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKL 342 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~i 342 (491)
.+.+....|+ |+++.| ++.+.++. |.+||+. . .....+..+........|+|||+.|+..+. +| .|.+
T Consensus 245 ~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~----~-~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 245 PGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLR----S-GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred CCcccCcEEC-CCCCEEEEEEecCCCceEEEEECC----C-CceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 6777889998 677655 46666665 6666775 3 334556666666778999999999887664 33 5777
Q ss_pred EeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---
Q 011179 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--- 419 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--- 419 (491)
+|+.... ...+.... .....+.|||||++|+....+
T Consensus 319 ~d~~g~~-----------------------------------~~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 319 MNADGSN-----------------------------------PRRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred EECCCCC-----------------------------------eEEeecCC------CcccCeEECCCCCEEEEEEcCCCc
Confidence 7865521 11111111 011345688899999887653
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC------CcEEEEcCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD------GDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D------g~v~iw~~~~~~ 473 (491)
..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.+ ..++++++....
T Consensus 358 ~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 358 FSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 3688999865543 3333 23357789999999987765543 257777876654
No 231
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=118.50 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=161.4
Q ss_pred CCcccc-CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-----C----eEE
Q 011179 116 GPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-----R----HLV 185 (491)
Q Consensus 116 ~~~~~~-~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~----~l~ 185 (491)
....++ .|...|+.+..-|++ .|.+-+.|+.+.+|++..+..+.... -.++++.|.+.. + .++
T Consensus 47 ~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll~ 119 (323)
T KOG0322|consen 47 DLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLLE 119 (323)
T ss_pred cchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhhee
Confidence 334455 577889999999984 57888899999999998764333221 134455554321 1 111
Q ss_pred EEECCC-eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCee
Q 011179 186 YASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR--ELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 186 ~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~--~l~~~~~dg~i~vwd~~~~~~ 261 (491)
+-+... .+++-|........+ ......+..+.+.+..+.. +++ .+++|.++|.+.+||+.++..
T Consensus 120 yp~rgsde~h~~D~g~~tqv~i------------~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGGDTTQVQI------------ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred cCCcccchhhhhccCccceeEc------------cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 111100 112222111111111 1111122334666666543 333 567888999999999999743
Q ss_pred e----------EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEE
Q 011179 262 S----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 262 ~----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 331 (491)
+ .....|..+|.++.|. +.-+.=++|+.+-.+..|++......-+.-..+.-..-.|..+...||++++
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred eeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEE
Confidence 3 3344689999999996 4444556788888899998863211112222233334568889999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc
Q 011179 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
|+++.|+.|++|..+++ +++..++-|.. . +.+.+|+|+..
T Consensus 267 ATAGWD~RiRVyswrtl----------------------------------~pLAVLkyHsa--g----vn~vAfspd~~ 306 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTL----------------------------------NPLAVLKYHSA--G----VNAVAFSPDCE 306 (323)
T ss_pred eecccCCcEEEEEeccC----------------------------------Cchhhhhhhhc--c----eeEEEeCCCCc
Confidence 99999999999999984 56666666662 2 23447778999
Q ss_pred EEEEEecCCeEEEEEC
Q 011179 412 YIYTGSHDSCVYVYDL 427 (491)
Q Consensus 412 ~l~~~~~dg~i~iwd~ 427 (491)
++|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.2e-13 Score=128.36 Aligned_cols=196 Identities=20% Similarity=0.210 Sum_probs=129.1
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCCeEEEEecccccC
Q 011179 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNV 304 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~ 304 (491)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+|...||.+..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 68889999999999887643 46999999988753 344445566789998 6776665 567788877776541
Q ss_pred CCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 305 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
.+.....+..+........|+|||+.|+..+. ++...+|.+...... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-------------------------------~ 320 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-------------------------------A 320 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-------------------------------e
Confidence 22334555556556677899999998886654 456666655321100 0
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeC
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~ 460 (491)
...++.+. ....+.|||||++|+..+.++ .|++||+.+++... +.. ........|+|||+.|+.++.
T Consensus 321 ~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 321 QRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred EEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEe
Confidence 01111111 112457889999999877654 69999998887543 332 234578899999998877765
Q ss_pred CC-c--EEEEcCC
Q 011179 461 DG-D--VVRWEFP 470 (491)
Q Consensus 461 Dg-~--v~iw~~~ 470 (491)
++ . +.+-++.
T Consensus 391 ~~g~~~l~~~~~~ 403 (427)
T PRK02889 391 QGGRSVLAAVSSD 403 (427)
T ss_pred cCCCEEEEEEECC
Confidence 44 3 4454553
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=9.3e-13 Score=110.20 Aligned_cols=276 Identities=20% Similarity=0.211 Sum_probs=177.3
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC---CCC-eEEEEECCCeEEEEECCCCccccccccccccccccccc
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.|.+.+|++...+..............+..+.|.- ++. .++-+...|.|.++.................. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i~~ 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---ISV 121 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---hhh
Confidence 46788998877544431112222233577777763 444 55667778999998865433322222111110 000
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEe
Q 011179 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 221 ~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 298 (491)
....++.|++.+..++++..+|.+.+-+........ .++.|.-++....|+..+.+++++|+.|+.+..||
T Consensus 122 -------~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 122 -------VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred -------eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 035678899999999999999999977766655444 77899999999999988889999999999999999
Q ss_pred cccccCCCceeeE-eccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 299 RRCLNVKGKPAGV-LMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
+|. ..+.+.. .+-|...|.+|.-+| .+.+|++|+.|..|++||.|++..+....
T Consensus 195 ~R~---p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--------------------- 250 (339)
T KOG0280|consen 195 IRI---PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--------------------- 250 (339)
T ss_pred ecC---CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC---------------------
Confidence 983 2233333 566889999998876 57799999999999999999865332110
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC--c---EEEeeccCCCCeeeeEecCC
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--E---QVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~sp~ 451 (491)
.....+.+....|... +++|+++-.+| .+|-+...+ + .....+.|.+-+..-.|...
T Consensus 251 ---------------~v~GGVWRi~~~p~~~--~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 251 ---------------KVGGGVWRIKHHPEIF--HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred ---------------ccccceEEEEecchhh--hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 0002233333333321 33344444444 555555443 2 33445578777888888555
Q ss_pred CCeEEEEe-CCCcEE-EEcCCCC
Q 011179 452 QPMLVSSS-WDGDVV-RWEFPGN 472 (491)
Q Consensus 452 ~~~l~s~~-~Dg~v~-iw~~~~~ 472 (491)
...|+|++ .|..++ +|-.-++
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cceeeeeeccccceeeeeeeccC
Confidence 55788864 577755 7865444
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=7.1e-12 Score=116.08 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=155.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~ 204 (491)
.-..+.|+|||+++.+++.||.|.++|+.+++.+.++.... ....+++++||++++++. ..+.+.++|.++.+..
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 33457899999999999999999999999998777765433 477899999999999776 5789999999988776
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeE-EEeccCCCeeEEEEecCCC
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~ 282 (491)
........... .....+.++..+|....+++.-. .+.|.+.|....+.+. .............|. +++
T Consensus 114 ~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d-pdg 183 (369)
T PF02239_consen 114 KTIPTGGMPVD---------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD-PDG 183 (369)
T ss_dssp EEEE--EE-TT---------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTS
T ss_pred eeccccccccc---------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC-ccc
Confidence 65443322110 02236778888888886665554 5889999987764332 233345567788886 777
Q ss_pred CEEEEE-eCCCeEEEEecccccC---------------------------------------------------CCceee
Q 011179 283 HLIYSG-SDDNLCKVWDRRCLNV---------------------------------------------------KGKPAG 310 (491)
Q Consensus 283 ~~l~s~-~~dg~i~iwd~~~~~~---------------------------------------------------~~~~~~ 310 (491)
++++.+ ..+..|-++|...... ..+.+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 776664 4455777777641100 011122
Q ss_pred EeccccCcEEEEEEcCCCCEEEEe----eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE
Q 011179 311 VLMGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 311 ~~~~~~~~i~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
.+.....+ ..+..+|+++++.+. ...+.|.++|..+.+ .+.
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----------------------------------~~~ 308 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----------------------------------VVK 308 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----------------------------------EEE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----------------------------------eeE
Confidence 22222223 456678888888877 344678888887732 222
Q ss_pred EEeCCceeEeeEEEEecccccCCCcEEEEEecC--CeEEEEECCCCcEEEeec
Q 011179 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 437 (491)
++..... .. ...+.|+++|+.+..+..+ +.|.+||..+.+.+..+.
T Consensus 309 ~i~~~~~-~~----~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 TITPGPG-KR----VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeccCC-Cc----EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2221111 01 2344678899988776654 369999999999998886
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=9.4e-12 Score=105.47 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=128.7
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC-CccccccccccccccccccccCCC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+.|.|||=.....+.++.. ..+|.++.+.++ .|++.- .+.|.||...+ .+.........-+.
T Consensus 75 NkviIWDD~k~~~i~el~f----~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk---------- 137 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF----NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK---------- 137 (346)
T ss_pred ceEEEEecccCcEEEEEEe----ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCC----------
Confidence 4799999555544444433 337999999765 354443 67899999873 33322222111111
Q ss_pred CceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCee--eEEEeccCCCeeEEEEecCCCCEEEEEeCCCe-EEEEecc
Q 011179 225 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR 300 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~ 300 (491)
.+.+++-+.+..+||. |-.-|.|+|-|+...+. ...+.+|.+.|.|++.+ .+|.++|++|..|+ |||||..
T Consensus 138 ----GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 ----GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ----ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence 3444443334445555 34569999999987665 46788999999999998 88999999999997 7999998
Q ss_pred cccCCCceeeEeccc--cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 301 CLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
.+..+..+... ...|.+++|+|+..+|+++|..|+++|+.++...
T Consensus 213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 77887777543 3569999999999999999999999999998744
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=2.7e-12 Score=123.66 Aligned_cols=233 Identities=21% Similarity=0.231 Sum_probs=149.9
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|.+... ...+. .+...+...+|+|||++|+.+..+ ..|++|++.+++.......
T Consensus 170 ~~l~~~d~~g~~-~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------------- 232 (417)
T TIGR02800 170 YELQVADYDGAN-PQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------------- 232 (417)
T ss_pred ceEEEEcCCCCC-CEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence 368888876442 23222 233368889999999999987754 4799999988765332221
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-eCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-CC--eEEE
Q 011179 223 DGGYSFGIFSLKFSTDGRELVAG-SSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~~-~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~i~i 296 (491)
...+.+++|+|||+.|+.. +.+ ..|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 233 ----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 233 ----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred ----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 1145568999999977654 333 3599999987754 3444555555677897 67877766554 34 5667
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCCCCCCcccccCCCccceeeeeeecCCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. .+. ...+..+...+..+.|+|+|++|+.++.++ .|.+||+.+..
T Consensus 307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------ 357 (417)
T TIGR02800 307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------ 357 (417)
T ss_pred EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC------------------------
Confidence 7765 222 334444556677889999999999888775 78888887621
Q ss_pred CccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEec
Q 011179 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
...+.... ....+.|+|+|++|+..+.++ .+++.+. ++.....+..+.+.+..++|+
T Consensus 358 -----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 -----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111111 013457888999888877754 4566664 455556665555566666663
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.2e-12 Score=125.43 Aligned_cols=234 Identities=21% Similarity=0.195 Sum_probs=146.5
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccCC
Q 011179 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
.|.++|.+.... ..+. .....+....|+|||+.|+..+.+ ..|.+||+.+++...+.....
T Consensus 199 ~l~i~d~dG~~~-~~l~---~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYNE-QMLL---RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCCc-eEee---cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 577778765422 2221 223468889999999999887643 368999998876543322111
Q ss_pred CCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCCe--EEEE
Q 011179 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKVW 297 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~--i~iw 297 (491)
.....+|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++. |.++
T Consensus 263 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 263 -----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred -----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 2335799999998875 45555 488889987765 4455555667788998 6777665554 3444 5555
Q ss_pred ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
|+. .++ ...+...........|+|||++|+..+.+ + .|.++|+.+..
T Consensus 336 dl~----~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~------------------------- 385 (448)
T PRK04792 336 NLA----SGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA------------------------- 385 (448)
T ss_pred ECC----CCC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-------------------------
Confidence 654 232 22332222233457899999998876553 3 35556665521
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-C--eEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
...+.... ....|.|+|||+.|+..+.+ + .+++++. +|.....+..+.+.+...+|+|-
T Consensus 386 ----------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 386 ----------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ----------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 11111110 11345788999988876654 3 4778887 66667777766777888999873
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.9e-13 Score=117.55 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=157.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe----EEEEEeecCCCceeEEEEEECCCCCeEE-EEECC--CeE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW----KIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMS--PIV 193 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d--~~i 193 (491)
.....+|-.++.. || .|++|-.+|.+.+|....+. .+..+. .+ ..+..+.-++...+|+ +|+.. ..+
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la---~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLA---TG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeee---cC-CceeeeccCCCCCceEecCchhcccce
Confidence 3445566666654 33 58888899999999988542 111111 11 2577777777665554 58888 789
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eeeEEEeccCC
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTS 270 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~ 270 (491)
.|||++..+.+...+.. ..+.+.+. -.-.++++.|.+. ...||+++.-+.|++||...+ +++..+.--..
T Consensus 176 kiwdle~~~qiw~aKNv-pnD~L~Lr------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNV-PNDRLGLR------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred eeeecccceeeeeccCC-CCccccce------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 99999877433222111 11111111 1226788999987 789999999999999999765 46677777788
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE-eccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
+++++... ++++++++|..-|.+..||++ .++.... +.+-.+.|+++..+|.++++++++-|..++|+|+.+..
T Consensus 249 ~is~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 249 PISSTGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cceeeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 99999996 889999999999999999998 6666665 78889999999999999999999999999999998843
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=8.4e-14 Score=118.80 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=154.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
+....++.++.+.++...|.+|-.+|++.-+.+... ++.........|...|..+.|+-....+++.+.|..+.---.+
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 456788999999999999999999999999987653 2222333445677899999999999999999999887665556
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEEEeccCCCeeEEEE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~ 277 (491)
.+....-........ ++.+.-. +...|...|.|.+..+ ..-.++.++.+|.+.+.+++|
T Consensus 145 ~~~~lg~Y~~~~~~t-----------------~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 145 SGNRLGGYNFETPAS-----------------ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred cCCcccceEeeccCC-----------------CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence 655433332222111 1111111 4555666666665544 344567788899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
. +...++++|..|..+.+||+. ........+.+|...|..+..-+.-+.+++++.||.|.+|++....
T Consensus 206 d-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 206 D-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred c-CCCcEEEeccccCceEEEecc---CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 6 788899999999999999996 2344566788999999999988888899999999999999997643
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=8.1e-12 Score=112.37 Aligned_cols=298 Identities=15% Similarity=0.171 Sum_probs=194.9
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC-------
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------- 191 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------- 191 (491)
.+....-++..++|||.|.+|++....| |.+|.-.....+.... |. .|..+.|+|.++||.+-+..+
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccChhhc
Confidence 3444567889999999999999887665 8899987765444322 22 599999999999999876543
Q ss_pred --------eEEEEECCCCccccccccccccc----cccccccCC-------------------CCc------eecEEEEE
Q 011179 192 --------IVHIVDVGSGTMESLANVTEIHD----GLDFSAADD-------------------GGY------SFGIFSLK 234 (491)
Q Consensus 192 --------~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~h------~~~i~~~~ 234 (491)
.+.+||+.++.....+....... .+.++..+. ..| ...|....
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEE
Confidence 49999999987755444332210 011111100 001 24677888
Q ss_pred EcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-----------CCCeEEE
Q 011179 235 FSTDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDNLCKV 296 (491)
Q Consensus 235 ~s~~~--~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----------~dg~i~i 296 (491)
|+|.+ ..|+. ....+.+++|.+..+..+....-....-..+.|. +.+++|+.-- ....+.+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEE
Confidence 88853 34444 3467889999998777665444333344567776 5565554321 1346778
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
++++ ...+....+..++|...+|.|.++.+++.+ .+..+.++|++.
T Consensus 260 ~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--------------------------- 307 (561)
T COG5354 260 LRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--------------------------- 307 (561)
T ss_pred Eeec-----ccccceeccccccceeeeecccCCceeEEecccccceeeccccc---------------------------
Confidence 8875 222333335678999999999988776544 678899999986
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCcEEE-eeccCCCCeeeeEecC
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHP 450 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp 450 (491)
. +. +......+ ..+.|||.+++++.++-| |.+-+||......+. .+.+. ...-+.|+|
T Consensus 308 --------N-l~-~~~Pe~~r------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 308 --------N-LR-FYFPEQKR------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred --------c-eE-EecCCccc------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence 2 11 11111111 123678899999997765 689999987655443 56543 345578999
Q ss_pred CCCeEEEEe------CCCcEEEEcCCCCC
Q 011179 451 SQPMLVSSS------WDGDVVRWEFPGNG 473 (491)
Q Consensus 451 ~~~~l~s~~------~Dg~v~iw~~~~~~ 473 (491)
|++++.+.. .|..|.||++.+..
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecCch
Confidence 999877764 47889999997754
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=9.1e-13 Score=128.18 Aligned_cols=198 Identities=19% Similarity=0.233 Sum_probs=156.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
|....+.-+...++.++.++.+.+||...+....+....... -....-+.++++.-++++|+.-+.|.+|+....+. .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-p 168 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-P 168 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-c
Confidence 333566667788999999999999999887555443222111 11233345677888999999999999999872211 1
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEecCCCCE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~ 284 (491)
. ...||.+.|.++.|+.||+++++.+.|.++++|++++.+... ...+|...|..++|. ++ .
T Consensus 169 ~---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~ 230 (967)
T KOG0974|consen 169 I---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--R 230 (967)
T ss_pred c---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--e
Confidence 1 234788899999999999999999999999999999988766 556999999999997 44 9
Q ss_pred EEEEeCCCeEEEEecccccCCCceeeEeccccC-cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 285 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
+++++.|.++++|+. .+..+..+.+|.. .|..++..++...+++++.|+.+++||+...
T Consensus 231 i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999999999976 4556667777764 5899999999999999999999999998763
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=1.9e-11 Score=113.60 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=171.8
Q ss_pred EEEEEcC----CeEEEEEC--CCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC----CCeEEEEECCC--Cccccc
Q 011179 139 FVAGFQA----SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVGS--GTMESL 206 (491)
Q Consensus 139 la~~~~d----g~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~i~iw~~~~--~~~~~~ 206 (491)
+++|+.. +.|.+|++ .++ .+....... .......++++|++++|.++.. ++.|..|.+.. +++..+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g-~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG-TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT-EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC-CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4455555 68999888 444 333222211 1224677999999999998876 46899998875 344333
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeeeEE--Eec-----------cCCC
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLSLR--ILA-----------HTSD 271 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~--~~~-----------h~~~ 271 (491)
...... ......++++|++++|+++.. +|.|.++++.. +..... ... ....
T Consensus 80 ~~~~~~--------------g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 80 NSVPSG--------------GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp EEEEES--------------SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred eeeccC--------------CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 222211 114567999999999988874 89999999987 433222 111 2345
Q ss_pred eeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCC
Q 011179 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 348 (491)
..++.++ |+++++++... ...|.+|++......-.....+ ......-..+.|+|+++++++.. .++.|.++++...
T Consensus 146 ~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 146 PHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp EEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 6889997 77887776543 4589999986321111111222 23345678999999999886655 4678999988732
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEEC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~ 427 (491)
.... ..+..................+.++|||++|+++.. .+.|.+|++
T Consensus 225 ~g~~------------------------------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 225 DGSL------------------------------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTEE------------------------------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCce------------------------------eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 1100 111111110000000001223357789999988775 578999998
Q ss_pred C--CCc--EEEeeccCCCCeeeeEecCCCCeEEEEe-CCCcEEEEcCCC
Q 011179 428 V--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 428 ~--~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~~~ 471 (491)
. +++ .+..+.......+.++++|+|++|+++. .++.|.+|+++.
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3 343 3444444445589999999999888776 567899998753
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5.3e-13 Score=121.44 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=170.6
Q ss_pred CCceeEEEEEECCCCCeEE-EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 167 SLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+...-+.|..+|||+|++ +|.+...|++||+..-.+..-..+.. ..|.-.-++.|-..++.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa----------------e~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA----------------EVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccc----------------cceeEEEeccchhhheEe
Confidence 3445678899999999865 56778899999998655432221111 134444445565666766
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
..|.+|-+..........++ ...-..++++.++..+++.|+ ...|+-+++. .+..+..+....+.++++..+
T Consensus 113 ~~DR~IefHak~G~hy~~RI---P~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTRI---PKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred ecCceeeehhhcCeeeeeec---CcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeec
Confidence 77777766543222221122 234467788766666665554 4567778887 888888888788999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
+-..+|++|+.+|.|..||.+........... ..+....+..... ...+..
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-------------------------~~v~s~pg~~~~~----svTal~ 235 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-------------------------SSVNSHPGGDAAP----SVTALK 235 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeecc-------------------------cccCCCccccccC----cceEEE
Confidence 99999999999999999999985432222110 0000011111111 123345
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCcEEEeec-cCCCCeeeeEecCC--CCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPS--QPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 406 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~--~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
|+.+|-.+++|..+|.|+|||+++.+++..-. +..-+|..+.|.+. .+.|+|. +...++|||-..+.....
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMAS 309 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceee
Confidence 66689999999999999999999988775443 33568999999876 3466665 457899999888765543
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.3e-12 Score=121.66 Aligned_cols=234 Identities=20% Similarity=0.246 Sum_probs=148.6
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccCC
Q 011179 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
.|.++|.+.+. ...+. .+...+....|+|||+.|+..+.+ ..|.+|++.+++...+....
T Consensus 180 ~l~~~d~~g~~-~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCC-ceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 47777877543 22222 233468899999999999887654 37999999888654433211
Q ss_pred CCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCC--eEEEE
Q 011179 224 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg--~i~iw 297 (491)
..+....|+|||+.|+.. ..+| .|++||+.+++. ..+..+........|+ ++++.|+..+ .+| .|.++
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 134468999999988754 3444 689999988765 3455556666778997 6777665554 344 46666
Q ss_pred ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
|+. .+.. ..+...........|+|+|+.|+..+.+ + .|.+||+.+..
T Consensus 317 d~~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~------------------------- 366 (430)
T PRK00178 317 NVN----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS------------------------- 366 (430)
T ss_pred ECC----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-------------------------
Confidence 764 2322 2222222233457899999999877653 2 47788887632
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
...+.... ....+.|+|||+.++..+.+ ..|+++++. +.....+..+.+.+...+|+|-
T Consensus 367 ----------~~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 367 ----------VRILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------EEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 11111100 11245788899999887654 357788874 4444556556677888888874
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=1e-12 Score=110.36 Aligned_cols=149 Identities=18% Similarity=0.275 Sum_probs=104.6
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEE--ECCCeEE
Q 011179 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVH 194 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~ 194 (491)
-.+.|+|+|++|++-.. -|...+|.++.. .....+ .. ...++|.+++|+|+++.+++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-ec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999998775333 234556665332 222222 22 223469999999999987654 3567999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
+||++.... . .+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..
T Consensus 87 lyd~~~~~i-~--~~~----------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~ 145 (194)
T PF08662_consen 87 LYDVKGKKI-F--SFG----------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SD 145 (194)
T ss_pred EEcCcccEe-E--eec----------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-Cc
Confidence 999962221 1 111 126778999999999999874 4679999999888876653 3 34
Q ss_pred eeEEEEecCCCCEEEEEeC------CCeEEEEecc
Q 011179 272 VNTVCFGDESGHLIYSGSD------DNLCKVWDRR 300 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~ 300 (491)
++.++|+ |+|++|++++. |+.++||+..
T Consensus 146 ~t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 146 ATDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence 7899998 88999998874 7888999983
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.9e-12 Score=117.47 Aligned_cols=284 Identities=15% Similarity=0.185 Sum_probs=173.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-----------CCeEE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIVH 194 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~ 194 (491)
.-+-+.|||-|.||++-...| |.+|--.+-..+++. .|. .|.-+.|||..+||++-+. ...+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 346789999999999998776 889976553333332 333 4899999999999998653 24799
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
|||+.+|.....+........ .-.-+.||.|++++|.-..+ .|.||+.....++-.-.-.-..|..
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~-------------~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~ 351 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYL-------------KWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRD 351 (698)
T ss_pred EEEccccchhcceeccCCCcc-------------ccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccC
Confidence 999999988776655321110 12347899999999987765 4889987664433222222344555
Q ss_pred EEEecCCCCEEEEEeCC----------------C-----------------------------------------eEEEE
Q 011179 275 VCFGDESGHLIYSGSDD----------------N-----------------------------------------LCKVW 297 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~d----------------g-----------------------------------------~i~iw 297 (491)
..|+ |.+++||.=+.. . .+.|+
T Consensus 352 Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 352 FSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred cccC-CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence 5665 444444422110 0 11111
Q ss_pred ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
.++. ..-++.. ..-.+.|...+|-|.|+.+++-+.. .++.+|-+.+.....
T Consensus 431 rire---KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~---------------------- 484 (698)
T KOG2314|consen 431 RIRE---KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP---------------------- 484 (698)
T ss_pred Eeec---cCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch----------------------
Confidence 1110 0001111 1234567788999999988765543 467888776411110
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe---cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
..+..+.. ..+....|||.|++++.+. ..|.+.++|+.-..+...-.......+.+.|.|.
T Consensus 485 --------~lVk~~dk--------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 485 --------SLVKELDK--------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred --------hhhhhhcc--------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCC
Confidence 12222222 1123335778999998764 4689999998743322221122245688999999
Q ss_pred CCeEEEEeC------CCcEEEEcCCCC
Q 011179 452 QPMLVSSSW------DGDVVRWEFPGN 472 (491)
Q Consensus 452 ~~~l~s~~~------Dg~v~iw~~~~~ 472 (491)
|+|++|++. |.--++|++.+.
T Consensus 549 GRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 549 GRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCEEEEeeehhhhccccceEEEEeecH
Confidence 999999875 445788888764
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.2e-12 Score=110.10 Aligned_cols=150 Identities=19% Similarity=0.269 Sum_probs=106.2
Q ss_pred EEEEECCCCCeEEEEEC----------CCeEEEEECCCCc-cccccccccccccccccccCCCCceecEEEEEEcCCCCE
Q 011179 173 TDTSLSPDQRHLVYASM----------SPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 173 ~~~~~sp~~~~l~~~~~----------d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 241 (491)
..+.|+|+|++|++-.. -+...+|.++... ......+ ...++|.+++|+|+|+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------------~~~~~I~~~~WsP~g~~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------------KKEGPIHDVAWSPNGNE 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------------cCCCceEEEEECcCCCE
Confidence 45889999988876433 1234555543221 1111111 11226999999999998
Q ss_pred EEEE--eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC---CeEEEEecccccCCCceeeEecccc
Q 011179 242 LVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 242 l~~~--~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+++. ..++.|.+||++ ++.+..+ +...++.+.|+ |+|++|++++.+ |.|.+||.+ ..+.+.... .
T Consensus 74 favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~----~~~~i~~~~--~ 143 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVR----KKKKISTFE--H 143 (194)
T ss_pred EEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECC----CCEEeeccc--c
Confidence 7654 356789999996 5555555 35678899998 889999988754 679999997 556665543 3
Q ss_pred CcEEEEEEcCCCCEEEEeeC------CCcEEEEeCCC
Q 011179 317 EGITFIDSRGDGRYLISNGK------DQAIKLWDIRK 347 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~ 347 (491)
..++.++|+|+|++|+++.. |+.++||+...
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 45789999999999998864 78899999864
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=1.4e-10 Score=104.95 Aligned_cols=283 Identities=13% Similarity=0.062 Sum_probs=168.7
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC----------CCeEEEEECCCCcccccccccccccc
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
++|.+.|..+++.+..+...... ..+ ++||++.|.++.. +..|.+||..+.+......+......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P----~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP----NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC----cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999999998777665544332 224 9999998887765 68999999999987765554322110
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCe
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 293 (491)
+ .......++++|||++|++.. . +..|.+.|+.+++.+..+.-. +...-...+ +.... .-+.||.
T Consensus 102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~--~~~~Dg~ 168 (352)
T TIGR02658 102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFF--MHCRDGS 168 (352)
T ss_pred h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccE--EEeecCc
Confidence 0 011344689999999998776 3 689999999999998877542 211222221 22222 2334555
Q ss_pred EEEEecccccCCC-ceeeEeccccCcEEE-EEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecC
Q 011179 294 CKVWDRRCLNVKG-KPAGVLMGHLEGITF-IDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 294 i~iwd~~~~~~~~-~~~~~~~~~~~~i~~-~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
.....+....... .....+.....++.. -.|.+ +|+++.+... |.|.+.|+........
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~----------------- 230 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL----------------- 230 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-----------------
Confidence 5444333111000 000001110001000 03344 7888777666 9999999765321110
Q ss_pred CCCCccccCCCCceEEEEeCCcee-EeeEEEEecccccCCCcEEEEEec----------CCeEEEEECCCCcEEEeeccC
Q 011179 371 PPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYH 439 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h 439 (491)
..+..+...... .......--.+++++++.+++... .+.|.++|..+++.+..+..
T Consensus 231 ------------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 231 ------------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred ------------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 111111100000 000000000356778888887431 25799999999999998873
Q ss_pred CCCeeeeEecCCCC-eEEEEe-CCCcEEEEcCCCCCCCCC
Q 011179 440 TSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 440 ~~~v~~~~~sp~~~-~l~s~~-~Dg~v~iw~~~~~~~~~~ 477 (491)
...+..++++||++ +|++.. .++.|.+.|..+.+....
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 45789999999999 777666 678899999988765443
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=2.4e-10 Score=106.18 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=166.4
Q ss_pred ceEEEEEcCCCCEEEEEEc----CCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECC
Q 011179 126 RAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVG 199 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~ 199 (491)
....++++|++++|.+... +|.|..|++... ..+..+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4456889999999998876 578999998764 233333222212335678999999999999875 7899999998
Q ss_pred C-CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe--eeE--EEe-ccCCCe
Q 011179 200 S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--LSL--RIL-AHTSDV 272 (491)
Q Consensus 200 ~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~--~~~--~~~-~h~~~v 272 (491)
. +.......... +.+. .+...........++.|+|+++++++... ...|++|++.... +.. .+. ......
T Consensus 118 ~~g~l~~~~~~~~-~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 118 DDGSLGEVVQTVR-HEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp TTSEEEEEEEEEE-SEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred CCcccceeeeecc-cCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 6 44433322111 0000 01111112235788999999998887643 4579999997755 321 222 344567
Q ss_pred eEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEecc------ccCcEEEEEEcCCCCEEEEee-CCCcEEEEe
Q 011179 273 NTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd 344 (491)
..+.|+ +++++++.. ..++.|.++++.......+.+..... .......|.++|||++|+++. ..+.|.+|+
T Consensus 195 Rh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 899998 677766554 55788999988622111222222211 112577899999999887755 467899999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~ 423 (491)
+....... ..+..+.... .......++|+|++|++++. ++.|.
T Consensus 274 ~d~~~g~l------------------------------~~~~~~~~~G------~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 274 LDPATGTL------------------------------TLVQTVPTGG------KFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ECTTTTTE------------------------------EEEEEEEESS------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EecCCCce------------------------------EEEEEEeCCC------CCccEEEEeCCCCEEEEEecCCCeEE
Confidence 95421100 1111111100 01123356789999998885 56899
Q ss_pred EEEC--CCCcEEEeec-cCCCCeeeeEe
Q 011179 424 VYDL--VSGEQVAALK-YHTSPVRDCSW 448 (491)
Q Consensus 424 iwd~--~~~~~~~~~~-~h~~~v~~~~~ 448 (491)
+|++ .+|.+...-. ..-....|+.|
T Consensus 318 vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9876 4666543322 12334555554
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.6e-11 Score=118.29 Aligned_cols=193 Identities=21% Similarity=0.144 Sum_probs=127.0
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCC--eEEEEecccc
Q 011179 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 302 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg--~i~iwd~~~~ 302 (491)
.+.+.+|+|||++|+.+..+ ..|++||+.+++... +..+...+.+++|+ ++++.|+ +.+.++ .|.+||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 57788999999999987654 479999999876533 33455667788998 6776554 555554 58888875
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+ ....+..+........|+|+|+.|+..+. ++ .|.++|+.+..
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 33444445455567789999998876654 33 47777765421
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEE
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 456 (491)
...+..+. .....+.|+|+|++|+.++.++ .|++||+.++... .+... ......+|+||+++|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123457888999999988876 8999999886543 33222 2345678999999887
Q ss_pred EEeCCC---cEEEEcCCC
Q 011179 457 SSSWDG---DVVRWEFPG 471 (491)
Q Consensus 457 s~~~Dg---~v~iw~~~~ 471 (491)
.++.++ .+++.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 776654 355556544
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.1e-11 Score=116.00 Aligned_cols=242 Identities=13% Similarity=0.110 Sum_probs=145.6
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCe--EEEEEC-C--CeEEEEECCCCccccccccccccccccccc
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
+.|.+.|.+.+.. ..+. .....+..-+|+|||+. ++..+. + ..|.+.++.+++...+.....
T Consensus 165 ~~l~~~d~dG~~~-~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCCc-eEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 4677778776532 2221 12235677899999975 322333 3 468888998887654433221
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCC--eeeEEEec-cCCCeeEEEEecCCCCEEEEEe-CC
Q 011179 221 ADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEAN--KLSLRILA-HTSDVNTVCFGDESGHLIYSGS-DD 291 (491)
Q Consensus 221 ~~~~~h~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~--~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~d 291 (491)
.....+|+|||+.|+..+. +..+.+|++..+ .....+.. +.......+|+ |+++.|+..+ .+
T Consensus 232 --------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~ 302 (428)
T PRK01029 232 --------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD 302 (428)
T ss_pred --------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence 3445799999998887653 223444777653 12233332 23345678998 7787666554 56
Q ss_pred CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeee
Q 011179 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 292 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
|...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+...
T Consensus 303 g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------------ 363 (428)
T PRK01029 303 GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------------ 363 (428)
T ss_pred CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------------
Confidence 766666543110 122344455555567788999999998876543 3689999876321
Q ss_pred cCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec---CCeEEEEECCCCcEEEeeccCCCCeee
Q 011179 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
..+.... .....+.|+|||+.|+.... ...|+++|+.+++...... ..+.+..
T Consensus 364 -----------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~ 419 (428)
T PRK01029 364 -----------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRF 419 (428)
T ss_pred -----------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccC
Confidence 1111111 01134578889998875443 3579999998877544433 4556778
Q ss_pred eEecCCC
Q 011179 446 CSWHPSQ 452 (491)
Q Consensus 446 ~~~sp~~ 452 (491)
.+|+|-.
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 8998754
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=8.4e-13 Score=112.78 Aligned_cols=274 Identities=15% Similarity=0.222 Sum_probs=171.1
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc--cccccccCCCCceecEEEEEEcCCCC--EEEEEe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD--GLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGS 246 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~s~~~~--~l~~~~ 246 (491)
-|.++.|...|.+|++|..+|.|.++.-...... ......... ..+|.--....-...|..+.|.++++ .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5889999999999999999999999975432210 111111000 00111000011223688899998664 567778
Q ss_pred CCCeEEEEECCCCeee-----------------------------------EEE-eccCCCeeEEEEecCCCCEEEEEeC
Q 011179 247 SDDCIYVYDLEANKLS-----------------------------------LRI-LAHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~-----------------------------------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
.|.+|++|-+...... +.+ ..|.-.|+++.++ .+...++++ .
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA-D 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA-D 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-c
Confidence 8999999987532110 001 1577789999997 677777665 5
Q ss_pred CCeEEEEecccccCCCceeeEecc-----ccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceee
Q 011179 291 DNLCKVWDRRCLNVKGKPAGVLMG-----HLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
|=.|.+|++...+..- .+..++. -..-|++..|+|. .+.++..+..|+|++-|+|....-....
T Consensus 184 dLRINLWnlei~d~sF-nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs--------- 253 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSF-NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS--------- 253 (433)
T ss_pred ceeeeeccccccCCce-eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh---------
Confidence 7789999987433222 1222222 3456889999995 5678888899999999999632211100
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC-CCCcEEEeeccCC---
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL-VSGEQVAALKYHT--- 440 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~--- 440 (491)
+.+..+.+..- +.....+++..-...||++|+|+++-.. -+|++||+ ...+++.+++-|.
T Consensus 254 ----------KlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 254 ----------KLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred ----------hhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 00000001100 1111122222333467789999998754 57999999 4566777766553
Q ss_pred ---------CCe---eeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 441 ---------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 441 ---------~~v---~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
..| ..++|+-++.+++||+....++++++..+.
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 222 457999999999999999999999966554
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=125.67 Aligned_cols=200 Identities=18% Similarity=0.235 Sum_probs=151.1
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.|....+.-+.+.++.++.++.+.+||...+.........+... -....-+-++++.-++++|+.-+.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~------------l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT------------LYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE------------EEeEEEEeccCcEEEEEecccccc
Confidence 34445566678889999999999999998776543332211100 002223345666778999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCCCC
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 329 (491)
|.+|+....+....+.+|.+.|..+.++ .+++++++.|+|.++|+|++.+ .+.. ...-+|+..|..+.|.|+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s----~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDS----REVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeeccc----ccccCcccccccceeEEEEeccc--
Confidence 9999997555555688999999999997 8999999999999999999983 3333 366789999999999998
Q ss_pred EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC
Q 011179 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.+++++.|.++++|+... ..+..+.+|.. +..+..+..++
T Consensus 230 ~i~t~gedctcrvW~~~~-----------------------------------~~l~~y~~h~g-----~~iw~~~~~~~ 269 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNG-----------------------------------TQLEVYDEHSG-----KGIWKIAVPIG 269 (967)
T ss_pred eeEEeccceEEEEEeccc-----------------------------------ceehhhhhhhh-----cceeEEEEcCC
Confidence 899999999999997654 34445555552 23344456667
Q ss_pred CcEEEEEecCCeEEEEECCC
Q 011179 410 QKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 410 ~~~l~~~~~dg~i~iwd~~~ 429 (491)
...+++++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 88999999999999999764
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=2.1e-11 Score=102.23 Aligned_cols=207 Identities=18% Similarity=0.170 Sum_probs=144.1
Q ss_pred CCceEEEEEcC---CCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 124 ~~~i~~~~~s~---dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
.+.++.+.|.. +|. .|+-+..+|.|.+|..+.......+.......- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45566666653 455 566777889999998776533333322222211 24578899999999999999999866
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeeeEE-EeccCCCee
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE-ANKLSLR-ILAHTSDVN 273 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~-~~~h~~~v~ 273 (491)
+............ ..|..++....|+. +.+.+.+|+.|+.+..||++ .++.+.. .+.|...|.
T Consensus 149 ~~t~~~le~vq~w--------------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQTW--------------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeecccc--------------cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 6555444332222 24777899999986 44688999999999999998 3444433 457899999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCC
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 348 (491)
+|.-+|+.+.+|++|+.|-.|++||.|. .++++..-. -.+.|+.+.++|.-. .++.+++-.-.+|-+....
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhc---ccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999999999999999999999999983 334443322 348899999998532 2334444445777777653
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.8e-10 Score=98.03 Aligned_cols=278 Identities=16% Similarity=0.208 Sum_probs=174.5
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCC--Ccccccccccccccccccc
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGS--GTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~ 219 (491)
+.-|++|++++...-......-...+.++-++|+|++++|.++..+ |.|.-|.++. |+...+-.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence 4569999998432222222223344478899999999999887654 6777777764 554333222111
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeeeE--EEeccCCC----------eeEEEEecCCCCEE
Q 011179 220 AADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLSL--RILAHTSD----------VNTVCFGDESGHLI 285 (491)
Q Consensus 220 ~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~~--~~~~h~~~----------v~~~~~~~~~~~~l 285 (491)
+ .+...++++++|++++++.. .|.|.++-+.. |.+.. ....|.+. +....+. |++++|
T Consensus 88 -----g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l 159 (346)
T COG2706 88 -----G--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYL 159 (346)
T ss_pred -----C--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEE
Confidence 1 13478999999999988875 57899999865 33221 22345554 7888886 888888
Q ss_pred EEEeC-CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCcccccCCCcccee
Q 011179 286 YSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 286 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++..- .-.|.+|++............+ .....-..|.|+|++++..+..+ +++|.+|...........
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~--------- 229 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE--------- 229 (346)
T ss_pred EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE---------
Confidence 87753 3478899987333222222222 34456688999999998876654 889999998773110000
Q ss_pred eeeeecCCCCCccccCCCCceEEE----EeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCC--CcE--EE
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVAT----YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GEQ--VA 434 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~ 434 (491)
-+.+.+ |.+... .-...+++||++|+++.. ...|.+|.+.. +++ +.
T Consensus 230 ------------------lQ~i~tlP~dF~g~~~-------~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 230 ------------------LQTIDTLPEDFTGTNW-------AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred ------------------eeeeccCccccCCCCc-------eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 011111 112111 112246779999998865 34788887654 332 22
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCC-CcEEEEcCCCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGN 472 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~D-g~v~iw~~~~~ 472 (491)
....+....++..|+|++++|+++..| ..|.+|..+..
T Consensus 285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 223444557899999999988888654 45888887654
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.9e-11 Score=112.17 Aligned_cols=194 Identities=17% Similarity=0.184 Sum_probs=154.9
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEEC------C--------------CCCeEEEEECCCe
Q 011179 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS------P--------------DQRHLVYASMSPI 192 (491)
Q Consensus 133 s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s------p--------------~~~~l~~~~~d~~ 192 (491)
.|-+.++|....||.++||+..+++..+.........+.-++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3556799999999999999999986555544333334444555542 2 2346778888999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
|.++++..++....... .+|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+......+
T Consensus 82 v~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 99999998887554432 2477799999999999999999999999999999999999999989999
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-----CCEEEEe-eCCCcEEEEeCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISN-GKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~-~~dg~i~iwd~~ 346 (491)
.+++++ +++..+++++. .|++||+. ..+.+..+.+|.++|.++.|..+ |.+++++ ..+..+.+|-++
T Consensus 148 ~sl~is-~D~~~l~~as~--~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCIS-PDGKILLTASR--QIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEc-CCCCEEEeccc--eEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998 77899988874 89999998 88999999999999999999776 6666654 345567788776
Q ss_pred C
Q 011179 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.6e-11 Score=114.11 Aligned_cols=195 Identities=21% Similarity=0.173 Sum_probs=125.8
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCC--eEEEEecccc
Q 011179 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 302 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg--~i~iwd~~~~ 302 (491)
.+....|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+| .|.+||+.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~-- 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLA-- 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECC--
Confidence 67889999999999876643 46999999888653 333344455678998 6777665 555555 57778886
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+....
T Consensus 276 --~~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---------------------------- 324 (430)
T PRK00178 276 --SR-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---------------------------- 324 (430)
T ss_pred --CC-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE----------------------------
Confidence 33 33445555556677899999998876654 33 4667776552210
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-C--eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEE
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 456 (491)
. .++.+. ....+.|+|||++|+..+.+ + .|++||+.+++... +. +........|+|||++|+
T Consensus 325 ----~-lt~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 325 ----R-VTFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLI 389 (430)
T ss_pred ----E-eecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEE
Confidence 0 011111 11235688899999877653 3 58899998876533 32 222334668999999877
Q ss_pred EEeCC---CcEEEEcCCCCC
Q 011179 457 SSSWD---GDVVRWEFPGNG 473 (491)
Q Consensus 457 s~~~D---g~v~iw~~~~~~ 473 (491)
.++.+ ..|.++++....
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEecCCceEEEEEECCCCc
Confidence 66543 346777775543
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.5e-11 Score=113.25 Aligned_cols=194 Identities=19% Similarity=0.161 Sum_probs=121.7
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCCe--EEEEecccc
Q 011179 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL 302 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~ 302 (491)
.+.+..|+|||+.|+..+.+ ..|++||+.+++.. .+....+......|+ |+++.|+ +.+.+|. |.++|+.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~-- 294 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIA-- 294 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECC--
Confidence 67789999999998876543 36999999887653 233333344578998 6777665 4566775 6666775
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+...
T Consensus 295 --tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----------------------------- 342 (448)
T PRK04792 295 --TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----------------------------- 342 (448)
T ss_pred --CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence 22 34455555556678899999998876654 33 466666654210
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-C--eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEE
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 456 (491)
...++.+.. ...+.|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus 343 ----~~Lt~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 343 ----SRLTFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred ----EEEecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 001111111 1245788899998876653 3 5677888887653 33222 1233568999999776
Q ss_pred EEeC-CCc--EEEEcCCCC
Q 011179 457 SSSW-DGD--VVRWEFPGN 472 (491)
Q Consensus 457 s~~~-Dg~--v~iw~~~~~ 472 (491)
..+. +|. +++++.+..
T Consensus 409 ~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 6554 443 667776544
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1e-12 Score=123.00 Aligned_cols=303 Identities=17% Similarity=0.246 Sum_probs=198.9
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC--CeEEEEECCCeEEEEECCC
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~ 200 (491)
..+.+.++.++|.|+-+|.++.-| +.+-|++........ ..+...+.|-...|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 356788999999999999998877 556677654222222 223445578888998864 4555555566677898865
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-eEEEeccCCCeeEEEEe
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFG 278 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~ 278 (491)
..-..+..+ ..||...|+.+.|+|+.. .+++++.|..+..||+++... +.....-......+.|+
T Consensus 101 ss~~aIef~-------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 101 SSSNAIEFV-------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred CCccceEEE-------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 433222211 136888999999999654 788999999999999987653 33444445566889998
Q ss_pred cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
-.+++.++ .+....|++||.+ ....++..+++|...|+.++|..- ...+.+.+.|++|+.||..+..........
T Consensus 168 yk~p~vla-sshg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 168 YKDPNVLA-SSHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred ccCcchhh-hccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 66776665 4567789999998 345678888899999999998653 346889999999999999875544333332
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC-CcEEEee
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAAL 436 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 436 (491)
...+.|..+.+++... ..+. +...++.+..---+.....|+..+ .++++++
T Consensus 244 t~~piw~~r~~Pfg~g---------~~~m-------------------p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEG---------YCIM-------------------PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred ccCcceeccccccCce---------eEec-------------------cccCCeeeeeccccchhhhhccccCCcceeee
Confidence 2333332222211110 0000 000111111111122334455444 3678999
Q ss_pred ccCCCCeeeeEecC--------CCC--eEEEEeCCCcEEEEcCCCC
Q 011179 437 KYHTSPVRDCSWHP--------SQP--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 437 ~~h~~~v~~~~~sp--------~~~--~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+|...|...-|-. |.+ .|+|-+.|..+++|-+.+.
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 99999888877754 222 7999999999999998764
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=6e-10 Score=99.72 Aligned_cols=175 Identities=18% Similarity=0.153 Sum_probs=133.6
Q ss_pred EcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC-eEEEEECCCCcccccccc
Q 011179 132 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV 209 (491)
Q Consensus 132 ~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~ 209 (491)
|++ +|.+++..+. |..-|.+...+..++ -++.+.|....+..+++-++.|..|| .+-|+|..+++.......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 444 6788888764 566676666553333 24555699999998888999999999 899999999886554432
Q ss_pred ccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 289 (491)
. +.|.++..+++|++++++.....|.+.|++++.....-+...+-|+.+.|+ ++++++|-+-
T Consensus 401 l-----------------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf 462 (668)
T COG4946 401 L-----------------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF 462 (668)
T ss_pred c-----------------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence 2 279999999999999999999999999999998766555667889999997 8899999887
Q ss_pred CCC----eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 290 DDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 290 ~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
-+| .|+++|+. .++ +...+.....-.+-+|.|++++|.--+
T Consensus 463 P~gy~tq~Iklydm~----~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMD----GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecC----CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 665 68999985 333 334444445556778999999887554
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=133.69 Aligned_cols=220 Identities=17% Similarity=0.216 Sum_probs=165.3
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.|.++.=+|...+-++|+.||.|++|....+..+....... . ..|+.+.|+.+|+.+..+..||.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------N-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------------c-chhhhhhhcccCCceeeeccCCc
Confidence 58888889999999999999999999998877655444322 1 37899999999999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe---CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
+.+|.+. .++....+.|......+.|. +..+++++ .++.+.+||..... ....+. ..|.+.++++++-|.
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeee---ehhhhccccCCCCCcccchhcccCc-ccceee--eecCCCceEEEEcCc
Confidence 9999987 66667778999999999996 36777764 47899999975221 122232 789999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.+.|++|+.+|.|++||++.. +...++.. +.
T Consensus 2348 ~qllisggr~G~v~l~D~rqr----------------------------------ql~h~~~~---------------~~ 2378 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQR----------------------------------QLRHTFQA---------------LD 2378 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHH----------------------------------HHHHHhhh---------------hh
Confidence 999999999999999999873 22222222 11
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeecc---CCCC--e--eeeEecCCCCeEEEEeCCCc
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSP--V--RDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~--v--~~~~~sp~~~~l~s~~~Dg~ 463 (491)
...++++|+..|.++||++.....++.+.. |.+- . ..+-.. ....|.+|+.||+
T Consensus 2379 -~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2379 -TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred -hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 356899999999999999988777766642 2211 1 111222 2346777777763
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=5.5e-11 Score=111.36 Aligned_cols=288 Identities=10% Similarity=0.085 Sum_probs=193.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
.....|++|+....++|+|+.||.++|..+.+.. .+.-.....+|...|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4578899999999999999999999999876531 1111234568999999999999999999999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTS 270 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~ 270 (491)
.|.+|-+-.+........ ...+.-|.+++|+.||..+.....||.|.|=.++.++.-. .+++ .
T Consensus 94 lIiVWmlykgsW~EEMiN--------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~ 157 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMIN--------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--Q 157 (1189)
T ss_pred eEEEEeeecccHHHHHhh--------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--h
Confidence 999999987765322111 1123379999999999999999999999888877654321 1221 2
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEeccccc---CCCceeeE----eccccCcEEEEEE--------cCCCCEEEEee
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VKGKPAGV----LMGHLEGITFIDS--------RGDGRYLISNG 335 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~----~~~~~~~i~~~~~--------~~~~~~l~s~~ 335 (491)
....+.|+ ++.+.++.+-..|.+.++|....- ....+... +......|..+.| .|+...|+++-
T Consensus 158 ~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 34578897 777788888888999999975110 00011111 1111122444554 35777899998
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
..|.+.|..-.+.. .++ .+...- . .....|+++|..||+
T Consensus 237 ~nGr~QiMR~eND~---------------------------------~Pv-v~dtgm---~----~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDP---------------------------------EPV-VVDTGM---K----IVGAKWNHNGAVLAV 275 (1189)
T ss_pred cCceehhhhhcCCC---------------------------------CCe-EEeccc---E----eecceecCCCcEEEE
Confidence 88888776544421 111 111110 1 122357779999999
Q ss_pred EecC---------CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 416 GSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 416 ~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
++.+ +.|.+|.. -|+.+.+++.....|++++|-..|-.++.+ .|+.|++=+++.
T Consensus 276 cG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 276 CGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred ccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 8764 25666653 578888888888899999997766555544 456665555443
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.5e-10 Score=110.30 Aligned_cols=209 Identities=17% Similarity=0.133 Sum_probs=128.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEE---EEEcC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-C
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFV---AGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S 190 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la---~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d 190 (491)
++.+......+..-+|||||+.++ +...+ ..|.+.++.+++.. .+....+ .....+|+|||+.|+..+. +
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g---~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQG---NQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCC---CccceEECCCCCEEEEEECCC
Confidence 444555666778889999997533 44344 35888898877432 2222222 3556899999999987653 2
Q ss_pred C----eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-Ceee
Q 011179 191 P----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NKLS 262 (491)
Q Consensus 191 ~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~--i~vwd~~~-~~~~ 262 (491)
| .+.+|++..+.......+... +.......+|+|||+.|+..+ .+|. |+++++.. +...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 2 344567665321111111110 001234679999999888766 3554 55555542 2334
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeCC---CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC---
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--- 336 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--- 336 (491)
..+..+...+....|+ |+++.|+..+.+ ..|.+||+. .++. ..+......+....|+|||+.|+....
T Consensus 320 ~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 320 RLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred EEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECCCC
Confidence 4555555677889998 778877766543 368899986 3333 334433345678899999998875443
Q ss_pred CCcEEEEeCCCC
Q 011179 337 DQAIKLWDIRKM 348 (491)
Q Consensus 337 dg~i~iwd~~~~ 348 (491)
...|.++|+...
T Consensus 394 ~~~L~~vdl~~g 405 (428)
T PRK01029 394 ESELYLISLITK 405 (428)
T ss_pred CceEEEEECCCC
Confidence 346888888763
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-11 Score=103.88 Aligned_cols=223 Identities=16% Similarity=0.256 Sum_probs=147.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeE--EEEEeecCCC------------ceeEEEEEECCCC--CeEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~~------------~~~v~~~~~sp~~--~~l~~~ 187 (491)
...|+++.|...|.||++|...|.|.+|.-..... .......++| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 56899999999999999999999999998654320 0000111122 2358888887655 467777
Q ss_pred ECCCeEEEEECCCCcccccccccccccccc--------------------------cccc--CCCCceecEEEEEEcCCC
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLD--------------------------FSAA--DDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~--~~~~h~~~i~~~~~s~~~ 239 (491)
+.|.+|++|.+.......+... ...++.. ..+. ....|...|.++.|+.|.
T Consensus 106 tNdktiKlWKiyeknlk~va~n-nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAEN-NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhcc-ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999865532211110 0000000 0000 124688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeee---EEEeccC-----CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-----
Q 011179 240 RELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG----- 306 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----- 306 (491)
..++++ .|-.|.+|+++-.... ..++.|. .-|++..|+|...+.+...+..|.|++-|+|....-.
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 887776 5667999998654322 2233443 4578889998888899999999999999998221111
Q ss_pred -------ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 307 -------KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 307 -------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
..+.-+.+....|..+.|+++|+++++-+. -+++|||++...
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 111122334466888999999999987654 479999998744
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=5.7e-09 Score=94.58 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=147.1
Q ss_pred EcCCCCEEEEEEc----------CCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEECCCCCeEEEEE-C-CCeEEE
Q 011179 132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYAS-M-SPIVHI 195 (491)
Q Consensus 132 ~s~dg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~-~-d~~i~i 195 (491)
+||||+.|.++.. +..|.+||..+.+.+.++...... ......++++|||++|++.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887655 789999999999888776654321 12344789999999998766 3 689999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee-EEEe-ccC--C
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLS-LRIL-AHT--S 270 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~-~h~--~ 270 (491)
.|+.+++......++.. ..-...+++..+ +-+.||......+.. ++.. .... -+. .
T Consensus 133 vD~~~~kvv~ei~vp~~-----------------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC-----------------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred EECCCCcEEEEEeCCCC-----------------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 99999987665544321 111112222211 122344333332221 1111 1100 011 0
Q ss_pred Ce-eEEEEecCCCCEEEEEeCCCeEEEEecccccCC-CceeeEecc-------ccCcEEEEEEcCCCCEEEEee------
Q 011179 271 DV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMG-------HLEGITFIDSRGDGRYLISNG------ 335 (491)
Q Consensus 271 ~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~------ 335 (491)
++ ..-.|.+.++.+++.... |+|.+.|+...... ......+.. ..+.+.-++++|+++.+++..
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 00 000445447777777666 99999996422111 112222111 233445599999999888743
Q ss_pred ----CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc
Q 011179 336 ----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 336 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
..+.|.++|..+. +.+..+.... ..+..+++||++
T Consensus 273 thk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG~-------~~~~iavS~Dgk 311 (352)
T TIGR02658 273 THKTASRFLFVVDAKTG----------------------------------KRLRKIELGH-------EIDSINVSQDAK 311 (352)
T ss_pred cccCCCCEEEEEECCCC----------------------------------eEEEEEeCCC-------ceeeEEECCCCC
Confidence 1247899998773 3344333221 234557888999
Q ss_pred -EEEEEe-cCCeEEEEECCCCcEEEeec
Q 011179 412 -YIYTGS-HDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 412 -~l~~~~-~dg~i~iwd~~~~~~~~~~~ 437 (491)
+|++.+ .++.|.++|..+++.+..+.
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 888776 47889999999999998883
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.1e-09 Score=90.70 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=172.9
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 195 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i 195 (491)
-.+.+..+-++|+|+++.|.++-. +|.|..|.++.. ..+..+........+...+++++++++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 345667788999999999988765 467888877752 133332222222224588999999999999876 478999
Q ss_pred EECCC-CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEe---ccCC
Q 011179 196 VDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRIL---AHTS 270 (491)
Q Consensus 196 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~---~h~~ 270 (491)
+.++. |.......... +.+. .++ ...-+..+.+..+.|++++|++.+- .-.|.+|++..+++...-. ....
T Consensus 116 ~p~~~dG~l~~~v~~~~-h~g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 116 YPLQADGSLQPVVQVVK-HTGS--GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred EEcccCCccccceeeee-cCCC--CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 99965 44433322211 1110 011 1111123788999999999988753 2459999999876543221 3345
Q ss_pred CeeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCCceeeEecc------ccCcEEEEEEcCCCCEEEEeeC-CCcEEE
Q 011179 271 DVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAIKL 342 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~s~~~-dg~i~i 342 (491)
....|.|+ |++++.+...+ +++|-+|........-..++.+.. -......|..++||++|.++.. ...|.+
T Consensus 192 GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 192 GPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 67999997 88888776654 899999998632111122222211 1345667889999999987654 346777
Q ss_pred EeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC-e
Q 011179 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-C 421 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~ 421 (491)
|.+.... ..+.......... .+.....++++|++|+++..++ .
T Consensus 271 f~V~~~~---------------------------------g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 271 FSVDPDG---------------------------------GKLELVGITPTEG---QFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEcCCC---------------------------------CEEEEEEEeccCC---cCCccceeCCCCCEEEEEccCCCc
Confidence 7776522 1111111111000 0011124677899999998864 6
Q ss_pred EEEEEC--CCCcEEEeec-cCCCCeeeeEec
Q 011179 422 VYVYDL--VSGEQVAALK-YHTSPVRDCSWH 449 (491)
Q Consensus 422 i~iwd~--~~~~~~~~~~-~h~~~v~~~~~s 449 (491)
|.+|.. .+|++-.... .......|+.|.
T Consensus 315 i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 315 ITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 777765 4555433332 233445566653
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=2.8e-09 Score=109.79 Aligned_cols=328 Identities=16% Similarity=0.160 Sum_probs=189.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEE----ECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
...+.|.++.|-++...|+.+..+|.|.+. +..+. .+... ......|.+++||||+..|+.++.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 446889999999999999999999999999 55443 22222 22334799999999999999999999888764
Q ss_pred CCCCccccccccc-------------cccccccccc--------------------cCCCCceecEEEEEEcCCCCEEEE
Q 011179 198 VGSGTMESLANVT-------------EIHDGLDFSA--------------------ADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 198 ~~~~~~~~~~~~~-------------~~~~~~~~~~--------------------~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
.. -.......+. -..+..+|.. .... +...-..++|-.||.++|+
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 22 1110000000 0000000000 0001 3335667999999999998
Q ss_pred EeC---C---CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC---CCeEEEEecccccCCCceeeEeccc
Q 011179 245 GSS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 245 ~~~---d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
.+. . ..++||+-+ |.+...-..-.+--.+++|. |.|++||+... ...|.+|..+... .+.....+...
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~ 303 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPE 303 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCC
Confidence 874 2 579999966 55444433334445678996 88999998765 3567777753211 12222222234
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeee-cCCCCCc---cccCCCC-ceEEEEeC
Q 011179 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM-DYPPQAR---DLKHPCD-QSVATYKG 390 (491)
Q Consensus 316 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-~~~~~~~~ 390 (491)
...|..+.|++|+..||..-.|. |.+|-..+.. |..+.. .++.... ...++.. ..+..+..
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------------EEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 56799999999999999977665 9999887632 221111 0111000 0011111 11222221
Q ss_pred -Cce--eEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE-----EEeeccCCCCeeeeEecCCCCeEEEEeCCC
Q 011179 391 -HSV--LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 391 -~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
... .........++..+|+..-++..-....+.+-.++.... ...+. -..+|.+++|++++..+++-..||
T Consensus 370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence 110 011111222222333333233222233566655544321 12232 357899999999998899999999
Q ss_pred cEEEEcCCCCC
Q 011179 463 DVVRWEFPGNG 473 (491)
Q Consensus 463 ~v~iw~~~~~~ 473 (491)
.|.+|......
T Consensus 449 ~l~~~~~~~~~ 459 (928)
T PF04762_consen 449 SLSIYEWDLKN 459 (928)
T ss_pred CEEEEEecCCC
Confidence 99999866544
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.7e-10 Score=103.90 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=146.8
Q ss_pred CCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE------cC--------------C
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------ST--------------D 238 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~------s~--------------~ 238 (491)
|-..++|....||.+++|+...++...-+.......+ ...+..| +| |
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-------------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-------------TCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccC-------------cceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 4567899999999999999998876443332221111 2222222 22 3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc
Q 011179 239 GRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
...++-|...|.|.+|+...++....+. .|.+.|+++.++ .+-..|.+++.|+.+..|+.. ....++.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQK 144 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecc----cceeeeeeccCC
Confidence 4468889999999999999999888776 699999999997 777899999999999999997 778888888888
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
..+.+++.+|||..+++++ +.|++||+.+ .+.+.+|.||.....
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~----------------------------------kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIET----------------------------------KEVVITFTGHGSPVR 188 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccC----------------------------------ceEEEEecCCCcceE
Confidence 8999999999999999887 4699999998 578899999986655
Q ss_pred eEEEEecccccCC-CcEEEEE-ecCCeEEEEECCC
Q 011179 397 LIRCHFSPVYSTG-QKYIYTG-SHDSCVYVYDLVS 429 (491)
Q Consensus 397 ~~~~~~~~~~s~~-~~~l~~~-~~dg~i~iwd~~~ 429 (491)
...+... ++.. |.+++++ ..+..+.+|-+..
T Consensus 189 t~~f~~~--~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTL--IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEe--ccccccceeeeccccccceeEEEEEc
Confidence 5444433 2212 5566554 3455677776543
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=126.75 Aligned_cols=192 Identities=10% Similarity=0.177 Sum_probs=147.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
..+-..|.++.=+|.-.+.++|+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCC
Confidence 34566788888999999999999999999999988866665444333 6899999999999999999999999999872
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCC--CeeeEEEeccCCCeeEE
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEA--NKLSLRILAHTSDVNTV 275 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~ 275 (491)
.-. .. ...|.....++.|-. ..+++++ .++.+.+||..- +... .-..|.+.++++
T Consensus 2283 k~~---~s--------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2283 KPY---TS--------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-VHTCHDGGATVL 2342 (2439)
T ss_pred cce---ec--------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-eeeecCCCceEE
Confidence 111 10 112555677777764 4566654 468899999643 2222 226899999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
++. |..++|++|+.+|.|++||++ ..+..+.++. +. ...++++++..|.++||++....
T Consensus 2343 ~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2343 AYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 997 788999999999999999998 6555555543 44 56689999999999999998754
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=4.4e-09 Score=99.72 Aligned_cols=264 Identities=14% Similarity=0.096 Sum_probs=162.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
.+..+++++.+|.|.-+|..+|+.+-+......... ... .++..+++++.++.+..+|..+|+.........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 356788888999999999999876654433332111 112 246778888899999999999988755433221
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEecCCCCEEEEEe
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSGS 289 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~l~s~~ 289 (491)
.+.+.-.. .+..++.++.++.|+.||.++++.+-++......+ .+.... +..++.+.
T Consensus 136 --------------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~ 197 (377)
T TIGR03300 136 --------------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGF 197 (377)
T ss_pred --------------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEEC
Confidence 11111011 24467788889999999999998776654322211 112222 24677888
Q ss_pred CCCeEEEEecccccCCCceeeEeccc-c---C---cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 290 DDNLCKVWDRRCLNVKGKPAGVLMGH-L---E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~---~---~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
.++.+..+|++ .++.+...... . . ....+.-+| .+..+++++.+|.+..||..+++.
T Consensus 198 ~~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---------- 263 (377)
T TIGR03300 198 AGGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---------- 263 (377)
T ss_pred CCCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----------
Confidence 88999999987 44443322110 0 0 000010111 245778888899999999977431
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
+-...... ...|. ..+..+++++.+|.|+.+|..+|+.+.......
T Consensus 264 ------------------------~W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~ 309 (377)
T TIGR03300 264 ------------------------LWKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK 309 (377)
T ss_pred ------------------------EEeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc
Confidence 11111000 01111 146678888899999999999998876653211
Q ss_pred -CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 441 -SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 441 -~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
........ .+..|++++.||.|+++|..+++.
T Consensus 310 ~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 310 YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 12222222 456888999999999999877654
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.29 E-value=2.5e-10 Score=97.95 Aligned_cols=250 Identities=17% Similarity=0.231 Sum_probs=172.5
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC-CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
..++...|++...-|-..-+++.+.|.+++||-- +.++.-..+... ...+++++.+.++...|+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~---------------mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY---------------MPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh---------------CCCCceEeeeeccceEEE
Confidence 3566667888888888888999999999999963 344432222211 123789999999999999
Q ss_pred EEeCCCeEEEEECC----CCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcE
Q 011179 244 AGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 244 ~~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
+|-.+|++.-+.+. ....++....|...+..+-|+ ....++++.+.|..+.---.+ .+..+..+.- ...-
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~ 158 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPA 158 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccC
Confidence 99999999988653 444556667899999999997 667889999988766433333 2221111100 0001
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
+.+.+.-. +...|...|.|.+-.+.... -+.+.++.+|....
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~~~~---- 200 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHTGEV---- 200 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcccce----
Confidence 11111111 33445555555554443211 25677788877433
Q ss_pred EEecccccCCCcEEEEEecCCeEEEEECCCCc-EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+..|.+..+.|++|..|..+.+||+.-.+ ....+.+|...|..++.-+--+.|++++.||.|.+|+++.....
T Consensus 201 --~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 201 --TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred --EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 333677789999999999999999997654 34567899999999999988899999999999999999876544
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.7e-09 Score=98.97 Aligned_cols=253 Identities=19% Similarity=0.292 Sum_probs=162.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC--CeEEE-----EECCCeEEEEECCC
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGS 200 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~-----~~~d~~i~iw~~~~ 200 (491)
++.+|++|..+.|- -..+.+.+|+..+...+... -|...|+.+.++|.+ ..+|+ .+.-..|+||...-
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k----l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK----LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceeee----eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 68899999875442 23567999999874333332 233469999999974 34443 24456899998763
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEE-EEEe--C---------CCeEEEEECCCCeeeEEEecc
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS--S---------DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~--~---------dg~i~vwd~~~~~~~~~~~~h 268 (491)
.............. ..=..+.|++-|.-| +.++ - ..+++++++........+ ..
T Consensus 204 ~~~~~~~a~ksFFk-------------adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k 269 (566)
T KOG2315|consen 204 EGQHQPVANKSFFK-------------ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK 269 (566)
T ss_pred ccccchhhhccccc-------------cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence 32221111111110 022357788766633 2222 1 246888888854544444 45
Q ss_pred CCCeeEEEEecCCCCEEEE--EeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEE
Q 011179 269 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLW 343 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iw 343 (491)
.++|.++.|+ ++++-+++ |-.-..+.|+|++ +.++..+ ..++-+++-|+|.|++|+.++-+ |.|-+|
T Consensus 270 ~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 270 EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 7999999998 66655444 4457789999985 5666655 35677889999999999988764 789999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-----
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 418 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----- 418 (491)
|+.+.+. +..+.... .+ -+ .|+|||.++++++.
T Consensus 342 Dv~n~K~----------------------------------i~~~~a~~--tt--~~----eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 342 DVPNRKL----------------------------------IAKFKAAN--TT--VF----EWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred eccchhh----------------------------------ccccccCC--ce--EE----EEcCCCcEEEEEeccccEE
Confidence 9988432 22222221 01 11 57789999999875
Q ss_pred -CCeEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 419 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 419 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
|+.++||+. +|..+..-...+ ....+.|-|-
T Consensus 380 vdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 380 VDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 678999997 677765543222 5777888763
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=1e-08 Score=107.72 Aligned_cols=274 Identities=11% Similarity=0.110 Sum_probs=158.2
Q ss_pred EEEEECCC-CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe
Q 011179 173 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC 250 (491)
Q Consensus 173 ~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~ 250 (491)
..++++++ +..+++-+.++.|+++|........... . ...+.. ........-.....++++++++.|+++. .++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~-g~~G~~-dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-T-GEEGLR-DGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-C-CCcCCC-CCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 45788875 5566666677889999986443211111 0 000000 0000001122467899999888766655 4577
Q ss_pred EEEEECCCCeeeEEEecc-----------------CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec
Q 011179 251 IYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
|+++|+.++.. ..+.+. -.....++++|.++.++++.+.++.|++||.. .+. +..+.
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~-v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGV-TRVFS 721 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCe-EEEEe
Confidence 99999877653 333210 12346789985477788888889999999985 221 11111
Q ss_pred c---------------ccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccc
Q 011179 314 G---------------HLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 314 ~---------------~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
+ .-.....|+++|+++.| ++-+.++.|++||+.+......... .. ..+.. ..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~--------~~~~~--l~ 789 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DP--------TFSDN--LF 789 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--cc--------ccCcc--cc
Confidence 1 11234579999999844 5556678999999876431100000 00 00000 00
Q ss_pred cCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec-------------cCCCCee
Q 011179 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------------YHTSPVR 444 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~ 444 (491)
..... .+.. ..........++++++|+++++-..++.|++||..++....... +.-....
T Consensus 790 ~fG~~------dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 790 KFGDH------DGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cccCC------CCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 0000 00001111233567789988888889999999998876543221 1123567
Q ss_pred eeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 445 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 445 ~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.++++++|+++++-+.++.|++||+..+..
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999999889999999999987643
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=1.5e-08 Score=96.02 Aligned_cols=261 Identities=18% Similarity=0.149 Sum_probs=158.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
++..+++++.+|.+..+|..+|+.+-+..... .+.+.-.. .+..++.++.++.|..||.++|+............
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 46778888899999999999986655433221 22211111 34567777889999999999988654433211100
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC----C------e-eEEEEecCCCC
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----D------V-NTVCFGDESGH 283 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~----~------v-~~~~~~~~~~~ 283 (491)
. . .. . .+.... + ..++++..++.+..+|..+++.+-....... . + ....+ .+.
T Consensus 179 ~--~-----~~---~-~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~ 242 (377)
T TIGR03300 179 T--L-----RG---S-ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG 242 (377)
T ss_pred e--e-----cC---C-CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence 0 0 00 0 011111 2 3678888899999999999886544321100 0 1 11112 245
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.++.+|.+..||.. +++.+..... ........ .+..+++++.+|.+..+|..+++..
T Consensus 243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~------------ 302 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSEL------------ 302 (377)
T ss_pred EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEE------------
Confidence 78888899999999997 5555544331 11112222 4567888889999999999774321
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCe
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
-....... ....+|.. .+..|++++.+|.|+++|..+|+.+..++.+...+
T Consensus 303 ----------------------W~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 303 ----------------------WKNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred ----------------------EccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 11100000 00111222 35688899999999999999999999888666443
Q ss_pred e-eeEecCCCCeEEEEeCCCcEEEE
Q 011179 444 R-DCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 444 ~-~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
. ...+. ++ .|+.++.||.|+.+
T Consensus 354 ~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE-CC-EEEEEeCCceEEEe
Confidence 3 23332 33 57888899999876
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=1.2e-08 Score=107.23 Aligned_cols=273 Identities=12% Similarity=0.119 Sum_probs=155.8
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEECCCCeEEEEEeecCC-----------CceeEEEEEECCCCCeEEEEEC-CCeEE
Q 011179 128 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKS-----------LRWTVTDTSLSPDQRHLVYASM-SPIVH 194 (491)
Q Consensus 128 ~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~l~~~~~-d~~i~ 194 (491)
..++++++ |+++++-..++.|++||.... .+........ .-.....+++.+++..|.++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 566667677889999998654 3322221000 1123578999998887666544 56899
Q ss_pred EEECCCCccccccccccccccccccccCC--CCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEecc---
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH--- 268 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--- 268 (491)
++|..++....+.... ..+..+..... ...-.....++++| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876543322110 00000000000 00011346799999 5666667777899999999877543 22111
Q ss_pred ------------CCCeeEEEEecCCCC-EEEEEeCCCeEEEEecccccCC----C-----ceeeEecc--------ccCc
Q 011179 269 ------------TSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVK----G-----KPAGVLMG--------HLEG 318 (491)
Q Consensus 269 ------------~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~-----~~~~~~~~--------~~~~ 318 (491)
-.....|+++ ++++ ++++-+.++.|++||+...... + .....+.. .-..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1235678998 5555 6666677899999998622100 0 00000000 0112
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
-..++++++|+++++-..++.|++||..+......... +. .....+. . .....
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~-----------------G~-~G~~dG~--------~-~~a~l 858 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT-----------------GK-AGFKDGK--------A-LKAQL 858 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc-----------------CC-cCCCCCc--------c-ccccc
Confidence 35788999999888888999999999876321110000 00 0000000 0 00000
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
.....++++++|+++++-+.++.|++||+.+++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112335677999888888899999999988764
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.1e-10 Score=106.47 Aligned_cols=257 Identities=10% Similarity=0.111 Sum_probs=168.1
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
....+++|+....+|++|+.||.+++..+.+...............+.. .....||...|.-+.|+.+.+.|-+...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsm-NQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSM-NQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccch-hhhhccCcceEEEEEeccccccccccCCCc
Confidence 3688999999999999999999999999876544322221111111111 123468999999999999999999999999
Q ss_pred eEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 250 CIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
.|.||-+-.+.....+. ...+-|.+++|+ .+|..+.....||.|.+=.+.....-++. +.+ .....+.|++|
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKe---Lkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKE---LKG--QLLAHVLWSED 167 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchh---cch--heccceeeccc
Confidence 99999998876554433 245678999997 88999999999998877665411111111 111 22346889999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC-ce-eEeeEEEEec--
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SV-LRTLIRCHFS-- 403 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-- 403 (491)
.+.++.+-..|.+.+||....-..... .+......+. +. ...+....|.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~---------------------------~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLE---------------------------KDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhh---------------------------hceEEeeeeeecCCCccccceeeccC
Confidence 999888888999999997652111000 0000000000 00 0001111110
Q ss_pred --ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 404 --PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 404 --~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
.-.-||...|+++...|.+.|..-.+......+. ..-.|....|+++|..|+.+|.|
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 0134588899999999999887654443333333 23578899999999999999865
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.20 E-value=4.5e-08 Score=82.84 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=135.3
Q ss_pred EEECCCCCeEEEEECCCeEEEEECCCCc--cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 011179 175 TSLSPDQRHLVYASMSPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~ 252 (491)
++.+.+|+.||+. .|..|.|-..++.- ......++.... -.-.-++||||+..||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------------PQWRkl~WSpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------------PQWRKLAWSPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------------chheEEEECCCCcEEEEEcCCCeEE
Confidence 5667888877765 46777776655432 111122211111 1456799999999999999999999
Q ss_pred EEECCCCeeeEEEec-------cCCCeeEEEEecCC-----CCEEEEEeCCCeEEEEecccc-cCCCceeeE--ecc-cc
Q 011179 253 VYDLEANKLSLRILA-------HTSDVNTVCFGDES-----GHLIYSGSDDNLCKVWDRRCL-NVKGKPAGV--LMG-HL 316 (491)
Q Consensus 253 vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~~~-~~ 316 (491)
++|+....+. .+.. -...|..+.|.+.. ...|++-..+|.++-|-+... ....+.... +.. +.
T Consensus 69 vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 69 VFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred EEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 9999764432 3321 23466777776332 235667777888887765311 012222222 222 46
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCc-----------EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 317 EGITFIDSRGDGRYLISNGKDQA-----------IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
..|.++.++|..++|++|+.... +.-|.+-+
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------------- 189 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------------- 189 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence 78999999999998888765432 11111111
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEE
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~ 465 (491)
+......+ .+.+...-..... -.+|.+.+.+...........|..|..||||..||+...+|.|.
T Consensus 190 ----~~Pyyk~v--------~~~~~~~~~~~~~---~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 190 ----DSPYYKQV--------TSSEDDITASSKR---RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred ----CCCcEEEc--------cccCccccccccc---cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 11100000 0001111111111 12334333332222233467899999999999999999999999
Q ss_pred EEcCCCCCCC
Q 011179 466 RWEFPGNGEA 475 (491)
Q Consensus 466 iw~~~~~~~~ 475 (491)
+|++++-...
T Consensus 255 LW~iPsL~~~ 264 (282)
T PF15492_consen 255 LWEIPSLRLQ 264 (282)
T ss_pred EEecCcchhh
Confidence 9999886543
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=2.8e-08 Score=89.30 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=135.8
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec-CCC-----ce---eEEEEE-ECC-CCCeEEEEECCCeEEEE
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-----RW---TVTDTS-LSP-DQRHLVYASMSPIVHIV 196 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~---~v~~~~-~sp-~~~~l~~~~~d~~i~iw 196 (491)
++--.+.||+.++.. ..|.|.+||.++. .+.++... .-. .. +...+. |++ +|.+++..+. |...|.
T Consensus 270 Y~R~~nsDGkrIvFq-~~GdIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 270 YPRNANSDGKRIVFQ-NAGDIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred cccccCCCCcEEEEe-cCCcEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 334456688877654 5678999998876 33333222 111 00 111111 443 6788888875 566666
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
+...+-.+++ +|...|.-..+..+++-++.|..|| .+-|+|..+++. .++...-+.|.++
T Consensus 347 ~~~~~~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av 407 (668)
T COG4946 347 RPWDGYSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV 407 (668)
T ss_pred CCCCCeeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE
Confidence 6554443322 3445788888888888899999999 899999998875 4555677889999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC----cEEEEeCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRK 347 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~i~iwd~~~ 347 (491)
..+ ++|+.++.+.....+.+.|+. ++.....-+...+-|+.++|+|+++++|-+--+| .|+++|+..
T Consensus 408 ~vs-~dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 408 KVS-PDGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEc-CCCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 997 899999999988899999997 5554444445567799999999999999876654 689999877
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=2.3e-08 Score=90.67 Aligned_cols=278 Identities=16% Similarity=0.200 Sum_probs=166.0
Q ss_pred CCceEEEEEcCCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEeecCCCceeEE-EEEECCCCCeEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQA---------------SQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYA 187 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~ 187 (491)
...|+-+.|||.+++|.+=+.. +.+.+||..+|..+.......... ... -+.|+-+.+++|-.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh
Confidence 4578999999999999986543 359999999986665543332221 122 57788888877655
Q ss_pred ECCCeEEEEECCCCccccccc-cccccccccccccCCCCcee----------------------------------cEEE
Q 011179 188 SMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAADDGGYSF----------------------------------GIFS 232 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~----------------------------------~i~~ 232 (491)
....++|+++ ++....... ......-.+|.......|.. .=..
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred -ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3456888886 332211110 00001111122211111110 1124
Q ss_pred EEEcCCCCEEEEEe-----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEE--EeCCCeEEEEec
Q 011179 233 LKFSTDGRELVAGS-----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS--GSDDNLCKVWDR 299 (491)
Q Consensus 233 ~~~s~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s--~~~dg~i~iwd~ 299 (491)
+.|.+.|++|++-- ....++++++....+.... .-.++|...+|.| .++.+++ |-.+..+.++|+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeeccc
Confidence 67788888766421 1256888888755543333 6688999999984 4444443 357889999998
Q ss_pred ccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
+ +... +......=..+.|+|.+++++.++-| |.+-+||.....
T Consensus 306 r-----~Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------------------- 351 (561)
T COG5354 306 R-----GNLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------------------- 351 (561)
T ss_pred c-----cceE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------------------
Confidence 6 3332 23334455678899999999998765 678999876521
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec------CCeEEEEECCCCcEEEeeccCCCCeeeeEecC
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 450 (491)
..+..+.+... ..| .||||+.++.+... |..|.|||+.... +. ..+.+.|.|
T Consensus 352 ------~~~~~~~~~n~----s~~----~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p 409 (561)
T COG5354 352 ------KVAGAFNGLNT----SYC----DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDP 409 (561)
T ss_pred ------EEEEEeecCCc----eEe----eccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccC
Confidence 11223333221 111 57889999887643 7889999985433 22 455667777
Q ss_pred CCCeEEEEeCCC
Q 011179 451 SQPMLVSSSWDG 462 (491)
Q Consensus 451 ~~~~l~s~~~Dg 462 (491)
.+++..+.+.+.
T Consensus 410 ~~~~~ttsSs~~ 421 (561)
T COG5354 410 SGQYVTTSSSCP 421 (561)
T ss_pred CcccceeeccCC
Confidence 776665555443
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=3.3e-10 Score=99.41 Aligned_cols=163 Identities=20% Similarity=0.212 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCcc
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTM 203 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~ 203 (491)
...+..+|++++||.+..+....++++....+..+..........-+++.|..+......+..- ..+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3456678888999988888887777776543211111111122234455555555555544433 4455555544332
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG 282 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 282 (491)
.. ..||-..+++++|+||+++|+++..|..|+|-.....-.+..+. +|...|..++.. ++
T Consensus 145 ~~-----------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~ 205 (390)
T KOG3914|consen 145 EP-----------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN 205 (390)
T ss_pred ch-----------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence 22 23677799999999999999999999999998887665555544 799999999995 45
Q ss_pred CEEEEEeCCCeEEEEecccccCCCceeeEe
Q 011179 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
..|++|+.|+++++||++ +++.+..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecc----cCCccccc
Confidence 679999999999999998 66655443
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=5.5e-08 Score=82.31 Aligned_cols=149 Identities=20% Similarity=0.193 Sum_probs=95.5
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCC--eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 130 SQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 130 ~~~s~dg~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
++.+.||++||+- .|..|.|-....+ ..+.+....+...-.-..++||||+..||.+...|+|+++|+.......+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5778999988877 5778888876654 122333333433335678999999999999999999999999865443222
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCC------CEEEEEeCCCeEEEEECCC--C---eeeEEE--e-ccCCCee
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVAGSSDDCIYVYDLEA--N---KLSLRI--L-AHTSDVN 273 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~------~~l~~~~~dg~i~vwd~~~--~---~~~~~~--~-~h~~~v~ 273 (491)
. ... +. ..-...|..+.|.+.. ..|++-...|.++-|-+.. . +....+ . .+...|+
T Consensus 82 p-~~~-----~~----~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 82 P-AMS-----FP----GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred c-ccc-----cC----CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 1 110 10 1123367778776532 2566777788887776532 1 222222 2 2467899
Q ss_pred EEEEecCCCCEEEEEeC
Q 011179 274 TVCFGDESGHLIYSGSD 290 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~ 290 (491)
++.|. +..++|+.|+.
T Consensus 152 ~~vy~-p~h~LLlVgG~ 167 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGC 167 (282)
T ss_pred EEEEc-CCCCEEEEecc
Confidence 99997 66677777664
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.8e-08 Score=93.22 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=124.8
Q ss_pred eEEEEEECCCCCe-EEEEECC---CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 171 TVTDTSLSPDQRH-LVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 171 ~v~~~~~sp~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
.+....|+|||+. ++..+.+ ..|.++|+.+++...+..... ......|+|||+.|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-----------------~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-----------------MLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-----------------cEEeeEECCCCCEEEEEE
Confidence 5778999999985 6655443 579999998887655443211 345678999998776543
Q ss_pred C---CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCC--eEEEEecccccCCCceeeEeccccCcEE
Q 011179 247 S---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 247 ~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
. +..|+++|+.+++. ..+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+.. ..+......
T Consensus 252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~-~rlt~~g~~-- 322 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSV-EQVVFHGKN-- 322 (419)
T ss_pred ccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCe-EeCccCCCc--
Confidence 2 35799999988764 4454444434556898 6776665554 344 46666665 2322 222211111
Q ss_pred EEEEcCCCCEEEEeeCC---------CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 321 FIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
...|+|+|+.|+..+.. ..|.+.|+.+.. ...+...
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------------------------------~~~LT~~ 367 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------------------------------IRRLTAN 367 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------------------------------eEECCCC
Confidence 24899999998876643 256666765522 1111111
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEe
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 448 (491)
. ....|.|+|||+.|+....++ .+.+.++. |.....+....+.+...+|
T Consensus 368 ~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 368 G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCCCC
Confidence 0 123468899999887766532 46777774 4433444333444544443
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=3.7e-08 Score=93.76 Aligned_cols=218 Identities=12% Similarity=0.035 Sum_probs=147.9
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCC------------CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEE
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg------------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 173 (491)
..+.+....+..+.+..|...|+.+.|.|-. -+||++...|.|.+||...+..+. ....+..++.
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~q 113 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQ 113 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchh
Confidence 4455666777788899999999999998831 157778888999999998874333 3345566889
Q ss_pred EEEECC---CC-CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCC
Q 011179 174 DTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD 248 (491)
Q Consensus 174 ~~~~sp---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~d 248 (491)
.++|-| +. ..|+.-....+|.+|+..+|+......... ....|+.+.| |.+.+..-+..
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~----------------~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH----------------EILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC----------------cceeeeeeCCCCcceEEEEccC
Confidence 999976 33 456666677899999999998654332111 1466688888 66777777777
Q ss_pred CeEEEEECCC-------CeeeEEEeccCC-------------------------CeeEEEEecCCCCEEEEEeCCCeEEE
Q 011179 249 DCIYVYDLEA-------NKLSLRILAHTS-------------------------DVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 249 g~i~vwd~~~-------~~~~~~~~~h~~-------------------------~v~~~~~~~~~~~~l~s~~~dg~i~i 296 (491)
|.+.+.+.-. ++..+.-..|.. ....++|+|.-.+.+ .......+.+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv 256 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLV 256 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEE
Confidence 7777776532 222222222222 012245664434443 3445678999
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~ 347 (491)
+|++ -..++....-..+.+..+.+-|+++ .|.+...||.+.+|--+.
T Consensus 257 ~dle----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 257 FDLE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred Ecch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9997 6667777666677777888887754 688999999999997654
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=5.7e-10 Score=101.70 Aligned_cols=288 Identities=11% Similarity=0.156 Sum_probs=184.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eEE---EEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~-~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
...+.+|...|..++--.+.+-+++++.|++|++|.+... ..+ .-......|..+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 3566899999999987777788999999999999998642 111 1234566788899999999998888765 899
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEe-----
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL----- 266 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~----- 266 (491)
|++||.--++......-.. ..+-.+.|.++. +-+...+.+| +...+|+++|.+..+....++
T Consensus 806 iHlWDPFigr~Laq~~dap-----------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAP-----------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred ceeecccccchhHhhhcCc-----------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 9999976665533211100 001111233332 1134444444 678899999999988776665
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEE-EeC
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WDI 345 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~ 345 (491)
+.+.-+.+++.. +.|++++.+-..|.|.+.|.+ +++.+..+..-.-....++ .|..+.|+....|..+.+ |..
T Consensus 874 ~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 874 GPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 334568899996 889999999999999999998 7777766654333333333 345566777777777777 765
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw 425 (491)
..+. ..+......... .|-.. -|..+++....+.+.+|
T Consensus 948 ldgi------------------------------------mh~q~kpppepa---hflqs---vgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 948 LDGI------------------------------------MHLQDKPPPEPA---HFLQS---VGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cCCe------------------------------------eeeccCCCCcch---hhhhc---cCceeEEeccCcEEEEE
Confidence 4321 111111100000 01001 24456777666777777
Q ss_pred ECCC----CcEEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 426 DLVS----GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 426 d~~~----~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
.-.. ...+..++ ...+..++++--|-+.-+..|...|.|.+
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 5211 11122222 24567888998898887888888888875
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=3.1e-08 Score=82.48 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=129.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC----CCCeEEEEECCCeEEEEECCCCccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASMSPIVHIVDVGSGTMESLANVTEI 212 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 212 (491)
.+||.|+..|...+|...+.+....+. ..+ +..+.... ....+..++.|.++++.+++.+..........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c--d~s---nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~- 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC--DVS---NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN- 158 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee--ccc---ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-
Confidence 479999999999999998764333322 111 22222211 12346677888899998887654432222111
Q ss_pred cccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-e-eE-EEeccCCCeeEEEEecCCCCEEEEEe
Q 011179 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-L-SL-RILAHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~-~~-~~~~h~~~v~~~~~~~~~~~~l~s~~ 289 (491)
-.+.++++++|++++++.+....|..|.+.... . +. ......+.-.+..|+ .....+|++.
T Consensus 159 ---------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~ 222 (344)
T KOG4532|consen 159 ---------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVF 222 (344)
T ss_pred ---------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEe
Confidence 037789999999999999999999999886543 2 22 223445556788897 7788999999
Q ss_pred CCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCCCC--EEEEeeCCCcEEEEeCCCCC
Q 011179 290 DDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~ 349 (491)
.||++.|||+|.....-... ..-..|.+.+..+.|++-|. +|...-.-+.+.+.|+++..
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 99999999998443221111 22345889999999998654 44444455679999999854
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=2.6e-07 Score=95.61 Aligned_cols=284 Identities=12% Similarity=0.154 Sum_probs=168.7
Q ss_pred CceEEEEEcCCCCEEEEEEc--CC--eEEEEECCCCeEEEEEeec-----CCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 125 SRAYVSQFSADGSLFVAGFQ--AS--QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~--dg--~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
..+...+|.+..+.+..+.. .. .|.+.....+.....+... ......|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 45677777777655443332 22 3444443333211122111 123457999999999999999999999999
Q ss_pred E----ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--------------
Q 011179 196 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-------------- 257 (491)
Q Consensus 196 w----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-------------- 257 (491)
. +..+.....+..+. .+|.+++||||+..|+..+.+++|.+.+-.
T Consensus 102 ~~~~~~~~~~~~E~VG~vd-----------------~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVD-----------------SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEccCCCCCceeEEEEEEc-----------------CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9 55554443333222 279999999999999999999988876421
Q ss_pred -C--------CeeeEEEec------------------------cCCCeeEEEEecCCCCEEEEEeC---C---CeEEEEe
Q 011179 258 -A--------NKLSLRILA------------------------HTSDVNTVCFGDESGHLIYSGSD---D---NLCKVWD 298 (491)
Q Consensus 258 -~--------~~~~~~~~~------------------------h~~~v~~~~~~~~~~~~l~s~~~---d---g~i~iwd 298 (491)
. |+....|.+ +...-..|+|- .||.++|+.+. . ..+|||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence 0 000011100 22345678895 89999998874 2 5799999
Q ss_pred cccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC---CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
.+ +.....-..-.+--.+++|.|.|++||+.-. ...|.+|.-+....
T Consensus 244 Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh------------------------- 293 (928)
T PF04762_consen 244 RE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH------------------------- 293 (928)
T ss_pred CC-----ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-------------------------
Confidence 74 3322222222222346899999999998764 23466665433110
Q ss_pred cccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE--EEeecc-CCCCeeeeEecCCC
Q 011179 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKY-HTSPVRDCSWHPSQ 452 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-h~~~v~~~~~sp~~ 452 (491)
++ ..+........+ ..+.|++|+..||....|. |.+|-..+..- ...+.. ....+..+.|+|..
T Consensus 294 ------ge--F~l~~~~~~~~v----~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 294 ------GE--FTLRFDPEEEKV----IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred ------ee--EecCCCCCCcee----eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 00 011100111122 2336777999999987666 99999877542 222321 23345669999976
Q ss_pred C-eEEEEeCCCcEEEEcC
Q 011179 453 P-MLVSSSWDGDVVRWEF 469 (491)
Q Consensus 453 ~-~l~s~~~Dg~v~iw~~ 469 (491)
. .|...+.+|.+..+++
T Consensus 361 p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCEEEEEecCCcEEEEEE
Confidence 6 5666666677655443
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=1e-08 Score=85.33 Aligned_cols=194 Identities=15% Similarity=0.053 Sum_probs=129.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 239 GRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
-.+|+.|+..|...+|...+.+....+ ..|...|+-+.-.-...--+..++.|.++++.++.. +.... ..|..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~----~s~~~--~~h~~ 157 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG----DSNKF--AVHNQ 157 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec----Ccccc--eeecc
Confidence 347999999999999999876643333 244444433221102233456778899999998852 11111 12333
Q ss_pred --cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 318 --GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 --~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.+.++.++++++++++.+....|..|.+..... ..+.+....
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------------------------y~~~~~~a~---- 201 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------------------------YIENIYEAP---- 201 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--------------------------------eeeeeEecc----
Confidence 378899999999999999999999999876321 111111111
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe-----eccCCCCeeeeEecCCCC--eEEEEeCCCcEEEEc
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-----LKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWE 468 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~h~~~v~~~~~sp~~~--~l~s~~~Dg~v~iw~ 468 (491)
.....|+..|+.....+|++..||++.|||++....... -..|.+.++.+.|++.|. +|...-.-+.+.+-|
T Consensus 202 -t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 202 -TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred -cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 112234556777888999999999999999987543322 236899999999999776 555555567899999
Q ss_pred CCCCCCC
Q 011179 469 FPGNGEA 475 (491)
Q Consensus 469 ~~~~~~~ 475 (491)
+++....
T Consensus 281 ~R~~~~~ 287 (344)
T KOG4532|consen 281 TRNYVNH 287 (344)
T ss_pred cccCcee
Confidence 8887543
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=3.4e-09 Score=87.65 Aligned_cols=202 Identities=19% Similarity=0.269 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee---------cCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
|..+.|+.+- .|+++..++.+.....-.+........ ...+.++-.+-+.+-.+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 6666776543 466666666655554433321111100 001111111112222356789999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
.+. ......+.+..+. .-.+.++...++.+.++. .-+..+.|+++..+.+..-..-...|
T Consensus 118 ~~~-~~~~~~~i~~~~~--------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHS--------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred chH-HHhhhhhcccccc--------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 775 2111111111111 112223333444444332 22346677766544332222223459
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 347 (491)
++++-.|...+++++|+.||.+-+||.+. ...++..+..|..+|+.+-|+| ++..|++++.||.+..||..+
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn---~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARN---VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEccc---ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999887888999999999999999983 2456667889999999999999 577899999999999999875
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=5.6e-10 Score=95.92 Aligned_cols=168 Identities=21% Similarity=0.338 Sum_probs=126.8
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC-CceeeEeccccCcEEE
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITF 321 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~ 321 (491)
++.+.+-.|-+-|++++... .+ ...+.|.++.|. ..+++++.|...|.|..+|+|+.... +.+...+ -|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf-~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF-QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-cc-ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 44455667889999888642 33 367889999996 77899999999999999999965322 3344444 48899999
Q ss_pred EEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE
Q 011179 322 IDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 322 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
+..-. ++++|++.+.+|.|++||++..+. +..+..+.||......+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeeeccccccccccc
Confidence 98765 788999999999999999987432 3458899999876555444
Q ss_pred EecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC----CCeeeeEec
Q 011179 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT----SPVRDCSWH 449 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s 449 (491)
.. .+....+++++.|...+||.+++|.++.++.... ..+.+++|.
T Consensus 353 ~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 353 HV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cc----ccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 33 3467788889999999999999999998886432 234555553
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.5e-07 Score=89.18 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=119.9
Q ss_pred cEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE-EEEeCC--CeEEEEeccc
Q 011179 229 GIFSLKFSTDGRE-LVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDD--NLCKVWDRRC 301 (491)
Q Consensus 229 ~i~~~~~s~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d--g~i~iwd~~~ 301 (491)
......|+|||+. ++..+. +..|+++|+.+++... +....+......|+ |+++.+ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC-
Confidence 4667899999985 554443 3569999998887543 33455556678898 666555 444444 457777764
Q ss_pred ccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.+ ....+..+........|+|||+.|+..+. .+ .|.++|+.+....
T Consensus 266 ---~g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--------------------------- 314 (419)
T PRK04043 266 ---TK-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--------------------------- 314 (419)
T ss_pred ---CC-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE---------------------------
Confidence 33 34445444443445689999998876654 23 5777777653210
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---------CeEEEEECCCCcEEEeeccCCCCeeeeEec
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
..++.+. ..+.|||||++|+..... ..|++.|+.++... .+... .......|+
T Consensus 315 ------rlt~~g~----------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~S 376 (419)
T PRK04043 315 ------QVVFHGK----------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFS 376 (419)
T ss_pred ------eCccCCC----------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEEC
Confidence 0011111 123678899988876653 37899999888653 34322 234468999
Q ss_pred CCCCeEEEEeCC-C--cEEEEcCCCCCC
Q 011179 450 PSQPMLVSSSWD-G--DVVRWEFPGNGE 474 (491)
Q Consensus 450 p~~~~l~s~~~D-g--~v~iw~~~~~~~ 474 (491)
|||+.|+..+.+ + .+.+.++.....
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 999977665543 3 366666665443
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=3.1e-09 Score=93.40 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=109.2
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCcc-ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--
Q 011179 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-- 248 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-- 248 (491)
+..+..+|++++||++..+....++++..... .......... ...+++.|..+.....++..-
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--------------~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--------------KRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--------------cCcceeeeeeccceEEEEeecCC
Confidence 44556778888888888888877777654432 1111111100 033445555555555554444
Q ss_pred -CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE-eccccCcEEEEEEcC
Q 011179 249 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRG 326 (491)
Q Consensus 249 -g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 326 (491)
..+.+|....+.+. .+.+|-..++.++|+ +|+++|+++..|..|++-... ....+.. ..||.+-|..++.-+
T Consensus 131 ~~~~di~s~~~~~~~-~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp----a~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRCE-PILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP----ATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ceeeeeecccccCcc-hhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC----cccchhhhccccHhheeeeeecc
Confidence 44555555544443 344999999999998 788999999999999997765 3333333 357999999999886
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 327 DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
+ ..|++++.|++|++||+++++...
T Consensus 205 ~-~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 205 N-YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred C-ceeeecCCCCcEEEEecccCCccc
Confidence 5 469999999999999999976553
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=9.8e-09 Score=87.19 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=162.8
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc--ccccccCCCCceecEEEEEEcCCCC--EEEEE
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG--LDFSAADDGGYSFGIFSLKFSTDGR--ELVAG 245 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~s~~~~--~l~~~ 245 (491)
..|+++.|...|.||++|...|.|.++.-.... ....+.....++ .+|.--....-...|..+.|..++. .++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 369999999999999999999999999865433 111111111111 1111100011122678888876543 56777
Q ss_pred eCCCeEEEEECCCCee-------------------------------------e-----EEE-eccCCCeeEEEEecCCC
Q 011179 246 SSDDCIYVYDLEANKL-------------------------------------S-----LRI-LAHTSDVNTVCFGDESG 282 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~~~~~~~~~ 282 (491)
+.|.+|++|.+..... + +.. ..|...|+++.|+ .+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence 7899999998754300 0 001 2466778899997 555
Q ss_pred CEEEEEeCCCeEEEEecccccCCCceeeEeccc-----cCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
..+++ +.|-.|.+|++...+.. -.+..+..| ..-|++..|+|. ...+...+..|.|++-|++....-....
T Consensus 185 et~lS-aDdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~- 261 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK- 261 (460)
T ss_pred heeee-ccceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch-
Confidence 66555 46778999998743322 222233333 356888999996 4566777888999999998532110000
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-cEEEe
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAA 435 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 435 (491)
..+....++ ..+.....+++......|+++|+|+++-.. -+|.|||.... .++.+
T Consensus 262 ------------------klfe~~~D~-----v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 262 ------------------KLFELTIDG-----VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred ------------------hhhhhccCc-----ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 000000000 001111112222233357779999987764 57999998764 46666
Q ss_pred eccCC------------CCe---eeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 436 LKYHT------------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 436 ~~~h~------------~~v---~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+.-|. ..| ..+.||-|.+.+++|+.....-++-..+
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 64442 233 3478898999999999888887776443
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3.4e-07 Score=84.13 Aligned_cols=290 Identities=13% Similarity=0.076 Sum_probs=168.4
Q ss_pred EEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCce
Q 011179 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS 227 (491)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 227 (491)
...|+...... .......++.=+.+.|||.|.||++--..| |.+|--.+-.....+. |.
T Consensus 192 svfwN~~~n~p---~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------Hp 250 (698)
T KOG2314|consen 192 SVFWNSKFNEP---SLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------HP 250 (698)
T ss_pred EEEccccCCch---hhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------CC
Confidence 45676554311 112233456778899999999999987655 7899654433322222 22
Q ss_pred ecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCC--Ce-eEEEEecCCCCEEEEEeCCCe
Q 011179 228 FGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTS--DV-NTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~h~~--~v-~~~~~~~~~~~~l~s~~~dg~ 293 (491)
.|.-+.|||..+||++-+. ...++|||+.+|...+.+....+ .+ .-+.|| .+++++|.-.. ..
T Consensus 251 -~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 -GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NS 327 (698)
T ss_pred -CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ce
Confidence 5788999999999998653 25699999999998887765222 22 345787 78888887766 57
Q ss_pred EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCCCCcccccCCCccceeeeeee
Q 011179 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
|.||+.. .-.++..-.-.-+.|....|+|.+.+||.-... ..+.+..+.++......+.-. -.-.-+
T Consensus 328 isIyEtp----sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn----VsDckL 399 (698)
T KOG2314|consen 328 ISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN----VSDCKL 399 (698)
T ss_pred EEEEecC----ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee----eeccEE
Confidence 8899875 222222212234678889999998888754321 235555555443332221100 000111
Q ss_pred cCCCCCccccCC-----------CCc--eEEEEeCCce---eEeeEEEEecccccCCCcEEEEEec---CCeEEEEECCC
Q 011179 369 DYPPQARDLKHP-----------CDQ--SVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVS 429 (491)
Q Consensus 369 ~~~~~~~~~~~~-----------~~~--~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~ 429 (491)
.+..++..+... +-. .+..+..... ...+....+.-+|-|.|..+++-+. ..++.+|.+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 122222221111 001 1111111111 1112222344456678877766543 35788998773
Q ss_pred -C---cEEEeeccCCCCeeeeEecCCCCeEEEE---eCCCcEEEEcCCC
Q 011179 430 -G---EQVAALKYHTSPVRDCSWHPSQPMLVSS---SWDGDVVRWEFPG 471 (491)
Q Consensus 430 -~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~---~~Dg~v~iw~~~~ 471 (491)
. +++..+. ....+.+.|+|.|++++.+ |..|.+.++|+..
T Consensus 480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2 2334443 3567889999999988776 4578899999885
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.2e-09 Score=97.96 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=159.7
Q ss_pred eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
....+|+..|..++--.+.+-+++++.|.+|++|.++...-..-.. ...-.-..|+.+|.++.|..+.+++
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts---------aCQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS---------ACQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc---------eeeeEhhhccCcccceeeeecccee
Confidence 3456787788888777777889999999999999986432110000 0000112477899999999998887
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe---cc--CCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEe----
Q 011179 243 VAGSSDDCIYVYDLEANKLSLRIL---AH--TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL---- 312 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~---~h--~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~---- 312 (491)
+++ ||.|.+||.--+.++..+. .| .+.|.|+.- .+..+++.| +...+|+++|.+ .......+
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVcn 871 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDAR----SCEWTCELKVCN 871 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchhhheeeecc----cccceeeEEecc
Confidence 765 7889999987777655332 12 223444322 244555555 788999999998 43333333
Q ss_pred -ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 313 -MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 313 -~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.+...-+.+++..+.|+.++++-..|.|.+.|.+++. .+..|+..
T Consensus 872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrpm 917 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRPM 917 (1034)
T ss_pred CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCcc
Confidence 3445668999999999999999999999999999843 23322221
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEecCCeEEE-EECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
. |..-..-.|..+.++....|.++.+ |...+|......+....+..-+ -.-|..|+++.....+.+|.-
T Consensus 918 e-------cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 918 E-------CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred c-------chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEec
Confidence 1 0000012345567777777888888 8877776655554333332211 124667888877777888753
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.01 E-value=1.1e-06 Score=77.72 Aligned_cols=223 Identities=17% Similarity=0.179 Sum_probs=137.8
Q ss_pred EEEECC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEc-CCCCEEEEEeCCCeE
Q 011179 174 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCI 251 (491)
Q Consensus 174 ~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-~~~~~l~~~~~dg~i 251 (491)
+..|.+ ++.++++-...+.|..|+..++....... . ....+++. +++ .|+++...+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~------------------~~~G~~~~~~~g-~l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-P------------------GPNGMAFDRPDG-RLYVADSGG-I 62 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-S------------------SEEEEEEECTTS-EEEEEETTC-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-C------------------CCceEEEEccCC-EEEEEEcCc-e
Confidence 567888 56666665568899999998876533111 0 25667777 565 466666655 5
Q ss_pred EEEECCCCeeeEEEec-----cCCCeeEEEEecCCCCEEEEEeCC--------CeEEEEecccccCCCceeeEeccccCc
Q 011179 252 YVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
.++|..+++....... .....+.+++. ++|++.++.... |.|..++.. ..+..+......
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~ 135 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGF 135 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESS
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCccc
Confidence 6669998865444332 33567889996 788877776644 445556542 223333444566
Q ss_pred EEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee
Q 011179 319 ITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 319 i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.+.|+|+|+++.|+ +-+..+.|..+++......... ...+..+.... ...
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~--g~p 186 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP--GYP 186 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS--CEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC--cCC
Confidence 78999999999776 5566788888888642210000 01111111111 011
Q ss_pred EEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEec-CCCCeEEEE
Q 011179 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSS 458 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~ 458 (491)
-.+++..+|++.++....+.|.++|.. |+.+..+......+++++|. ++.+.|+..
T Consensus 187 ----DG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 187 ----DGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----EEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ----CcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 122455689888887888999999986 99888887655689999994 665644433
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.7e-10 Score=108.43 Aligned_cols=207 Identities=21% Similarity=0.227 Sum_probs=146.2
Q ss_pred cccccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC
Q 011179 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (491)
++..+.+|+.+. ..++.|...-+|++|+-+.+.|+.|+..|.|++|++.+|... ....+|+.+|+-+.-+.||.
T Consensus 1083 dr~~IFSRFr~w---~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1083 DRQFIFSRFRSW---RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred cchhhHhhcccc---hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccccCCcc
Confidence 344555566553 467889999999999999999999999999999999998433 34578888999999999998
Q ss_pred eEEEEECC--CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011179 183 HLVYASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 183 ~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
.+++.+.- ....+|++.+ ......... .-.++.|+.....-+.|+......+||+.++.
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASS-TGGPRHSFD------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred eeeeeccccCchHHHhcccc-ccCcccccc------------------ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 87775543 3578999865 111111111 45678888766555666666779999999998
Q ss_pred eeEEEe----ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC
Q 011179 261 LSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 261 ~~~~~~----~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
.+.++. +....-++..|+ |...+++ .||. +||++ ....++.+...+..+ .-.|+|+|..++..+
T Consensus 1218 ~l~tylt~~~~~~y~~n~a~Fs-P~D~LIl---ndGv--LWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFS-PCDTLIL---NDGV--LWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS- 1285 (1516)
T ss_pred HHHHhcCcchhhhhhccccccC-CCcceEe---eCce--eeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-
Confidence 776632 122233778898 5666664 4554 79998 556666655443222 335999999998876
Q ss_pred CCcEEEEeCCCCCC
Q 011179 337 DQAIKLWDIRKMSS 350 (491)
Q Consensus 337 dg~i~iwd~~~~~~ 350 (491)
.|||+++...
T Consensus 1286 ----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1286 ----EIWDMRTFKL 1295 (1516)
T ss_pred ----hhhhhHHHHH
Confidence 4899998654
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=90.39 Aligned_cols=271 Identities=12% Similarity=0.075 Sum_probs=176.4
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-----------
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------- 239 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~----------- 239 (491)
.-.++.|+|.| +||.|+. ..|.+.|..+-+.+.... .|...|+.+.|.|-.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie----------------~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIE----------------LHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccc----------------cCccceeEEEeccCCCchhccCcccc
Confidence 46678899877 5777764 568888877665544433 245589999998721
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC--CC-CEEEEEeCCCeEEEEecccccCCCceeeEeccc
Q 011179 240 -RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE--SG-HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 240 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
-.||++...|.|.+||...+..+..+..|..++..++|-+. +. .+|++-....++.+|+.. ++..+......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~Wk~~ys 154 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKFWKYDYS 154 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCceeeccccC
Confidence 25777888899999999999888888899999999999732 23 577777788899999987 77777777666
Q ss_pred cCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee
Q 011179 316 LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
.....|+.+.| |.+.+...+..|.+.+-+.-....+... .....+..-...+.........+.....-...
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p-----gk~~qI~sd~Sdl~~lere~at~ns~ts~~~s--- 226 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP-----GKEFQITSDHSDLAHLERETATGNSTTSTPAS--- 226 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC-----ceeEEEecCccchhhhhhhhhccccccCCCcc---
Confidence 67778899888 6677887778888777776543322111 00011100000000000000000000000000
Q ss_pred EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC--eEEEEeCCCcEEEEcCCC
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~~~Dg~v~iw~~~~ 471 (491)
...+..+...+|+|.-+-++-......+.++|++-..++..+.-..+.+.-+.|-|+++ .|+..-.||.+.+|--..
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 00000111224566656566566677799999998888888876777777788888776 899999999999997654
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=4.2e-09 Score=90.66 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=111.6
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----- 259 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----- 259 (491)
++.+.+..|-+-|+++|...... -+..|.++.|...++.+..|+.+|.|..+|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~------------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ------------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeecccccccc------------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 44455667777788776543332 1226888899988999999999999999999865
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE--EcCCCCEEEEeeCC
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKD 337 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~s~~~d 337 (491)
.+...+ -|...|+++..-.-++++|++.+.+|+|++||+|..+ .++.+..+.+|...-.-+- ..+....+++++.|
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCe
Confidence 233333 7999999998874478899999999999999999332 2234888888876544433 45667788889999
Q ss_pred CcEEEEeCCCCCCcccc
Q 011179 338 QAIKLWDIRKMSSNASC 354 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~ 354 (491)
...+||.++.+......
T Consensus 368 cytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTI 384 (425)
T ss_pred eEEEEEecccCceeecc
Confidence 99999999986544433
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=8.4e-09 Score=85.40 Aligned_cols=173 Identities=9% Similarity=0.103 Sum_probs=111.4
Q ss_pred ccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC
Q 011179 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 189 (491)
+..-..+.+.+..|.++-.+-+.+--++.+++++.||.+.+++.+....+..... ..|. .-.+.+....+..+.++..
T Consensus 75 rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~-~~~~-~~as~~~~~~~~~i~s~~~ 152 (319)
T KOG4714|consen 75 RDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIP-SIHS-GSASRKICRHGNSILSGGC 152 (319)
T ss_pred cccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcc-cccc-cccccceeecccEEecCCc
Confidence 3334445566666777777777777788899999999999999876321111111 1111 1112222334444444321
Q ss_pred -----CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee-
Q 011179 190 -----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS- 262 (491)
Q Consensus 190 -----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~- 262 (491)
-+..+.|+++..+....... -...|.+++-+| +.+.+++|+.||.+-+||.+.....
T Consensus 153 g~~n~~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~ 216 (319)
T KOG4714|consen 153 GNWNAQDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV 216 (319)
T ss_pred ceEeeccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH
Confidence 23345555543322111110 011488888888 4557788889999999999887433
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
..+..|..++..+-|+|.++..|++++.||.+-.||..
T Consensus 217 S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 217 SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 34568999999999999999999999999999999975
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=3.6e-06 Score=74.29 Aligned_cols=222 Identities=18% Similarity=0.189 Sum_probs=136.5
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCC
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+|+|..||..+|+.+-+......... ..+. ..+++..+++++.++.|..||..+|+.............
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--------- 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGG-PVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG--------- 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSS-EEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS---------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCC-ccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc---------
Confidence 68999999999987777654322222 2211 223567788888999999999999987655544221111
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCC---CeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
. . ..++..+++++.++.|+.+|..+++.+... ..... ........ ..+..++.+..++.|..+|++
T Consensus 71 ----~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 71 ----A----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp ----G----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETT
T ss_pred ----e----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecC
Confidence 1 1 123456777778889999999999988774 32211 11122221 236788888889999999998
Q ss_pred cccCCCceeeEeccccCc----------EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecC
Q 011179 301 CLNVKGKPAGVLMGHLEG----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
+++.+......... +..-....++ .++.++.++.+.-+|+.+..
T Consensus 141 ----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~--------------------- 194 (238)
T PF13360_consen 141 ----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE--------------------- 194 (238)
T ss_dssp ----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---------------------
T ss_pred ----CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---------------------
Confidence 77776665443311 1222223344 66667777753333888732
Q ss_pred CCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
.+ +..... .. ......++..|+.++.++.|..||+.+|+.+..
T Consensus 195 -------------~~--w~~~~~--~~-----~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 195 -------------KL--WSKPIS--GI-----YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -------------EE--EEECSS---E-----CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -------------EE--EEecCC--Cc-----cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 11 111100 00 001223677888888999999999999987643
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=8e-09 Score=97.59 Aligned_cols=276 Identities=17% Similarity=0.172 Sum_probs=168.8
Q ss_pred CCCCCCccccC-CCCceEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC-CeEEEE
Q 011179 112 LPVNGPWPVDQ-TTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYA 187 (491)
Q Consensus 112 ~~~~~~~~~~~-h~~~i~~~~~s~dg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~ 187 (491)
.|..++.-++. -.-.|-.++|+|.. .+-++......-.+|++.....-......++|...|+.+.|+|.. ..++++
T Consensus 54 ~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred CCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec
Confidence 34444433322 23456778888864 344444455556789987653334445668888899999999976 578899
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL 266 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 266 (491)
+.|..++.||+.+...... .... -......++|+.....+++.+....|.+||++.+. ++..++
T Consensus 134 svdt~vh~wd~rSp~~p~y-s~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFY-STSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCccee-eeec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec
Confidence 9999999999987643111 1111 11145678998755556666677789999998764 566788
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC--EEEEeeCCCcEEEEe
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWD 344 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd 344 (491)
+|...|+.+.|+......+.+++.||+|+.||.... .... ........+|..-.+.|-|. ++.---.+..+.+++
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS--t~e~-~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS--TTES-KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc--cccc-ceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence 899999999998666678899999999999998622 1111 12222345666666666443 222222222444444
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe--eEEEEec--ccccCCCcEEEEEecCC
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT--LIRCHFS--PVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~s~~~~~l~~~~~dg 420 (491)
.++...... .....+++.+|.||..... +.++.-. -.+....-.|++=+.|.
T Consensus 276 c~n~d~e~n------------------------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~ 331 (1081)
T KOG0309|consen 276 CENSDLEWN------------------------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ 331 (1081)
T ss_pred ccchhhhhc------------------------cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence 443221100 0011367888888874211 1111100 01222234688999999
Q ss_pred eEEEEECCC
Q 011179 421 CVYVYDLVS 429 (491)
Q Consensus 421 ~i~iwd~~~ 429 (491)
.+++|-+.+
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 999998764
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3e-08 Score=88.55 Aligned_cols=315 Identities=10% Similarity=0.063 Sum_probs=193.4
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCC
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~ 201 (491)
|++.|+.+.-+ -.+++++++.||.++.|.-..-.-+.-......|...|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66677766555 4578999999999999986542234444445667778999999999999999777 999999999877
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCC-C-CEEEEE-eCCCeEEEEECCCCe--eeEEEeccCCCeeEEE
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-G-RELVAG-SSDDCIYVYDLEANK--LSLRILAHTSDVNTVC 276 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~-~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~ 276 (491)
......++..... ..+...++. . ..|+++ -.++.+.++|-...- ....-.-|..+|.++.
T Consensus 87 DminmiKL~~lPg---------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 87 DMINMIKLVDLPG---------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred chhhhcccccCCC---------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 6654444433221 111122221 1 133333 357889999976543 2233346999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeccc-ccCCCc-e---------eeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRC-LNVKGK-P---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
++ +.+..+++....|.|.-|.... .+.... . +..+.......+++.|+|+|..+.+-+.|..|+++++
T Consensus 152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 98 7788899999999999998762 110011 1 1112223455789999999999999999999999999
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE---EEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV---ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 422 (491)
.++...+.............+. +.....+.. ++.. +.+..+.. ... ....|...|++|+.|+-=| |
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks---~y~l~~Vel--gRRmaverelek~~~-~~~----~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKS---PYGLMHVEL--GRRMAVERELEKHGS-TVG----TNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred ccchhhhhhhccchhhhhcccc---ccccceeeh--hhhhhHHhhHhhhcC-ccc----ceeEEcCCCCEEEeeccee-E
Confidence 9977655443221111111000 000000000 0000 00111111 111 1224556799999998777 8
Q ss_pred EEEECCCCcEEEeecc------------------C---------CCCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 423 YVYDLVSGEQVAALKY------------------H---------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~~------------------h---------~~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
++.++.+++++..+-. + ..+. +.+.+|-.+++++-.-..++++
T Consensus 300 kvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 300 KVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 9999998877665421 1 1111 2255566677777777777777
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.89 E-value=1.4e-07 Score=91.60 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=133.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++..++.|+-...+..+|+.+.+..+...-..+.|+-++. +++++.+|...|+|.+-|.+ ..+.+..+..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4456788888888999999998887766554555777765 47899999999999999998 8889999999999
Q ss_pred cEEEEEEcCCCCEEEEeeC---------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 318 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
.|..+.. .|+.|++++. |.-|++||+|.+.........
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~------------------------------- 265 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP------------------------------- 265 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------------------------------
Confidence 9987766 5778998875 566899999986654332110
Q ss_pred eCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC---C-cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---G-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
.+. ... .|.|.+ ...+++.+..|...+-|..+ . .-+..+..-...+..+++|++++.++.|..+|.|
T Consensus 266 ~~P----~fl--rf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 266 YGP----QFL--RFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCc----hhh--hhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 000 001 122222 24578888889999998432 2 1123333344559999999999999999999999
Q ss_pred EEEc
Q 011179 465 VRWE 468 (491)
Q Consensus 465 ~iw~ 468 (491)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 304
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=7.1e-07 Score=84.64 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=109.3
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
|...|.--+++..+++++.|+.-|.+++|+-..+..... ...+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345666667888899999999999999999887633222 222234467778889999999999999999999887644
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEe
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~ 278 (491)
......+ .+.+..|+..|++++|++++..+++|...|.|..-.+.... ....+....+.|-.+.+.
T Consensus 110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 3222222 22233478899999999999999999999999988887721 122333456777777774
Q ss_pred cCCCCEEEEEeC
Q 011179 279 DESGHLIYSGSD 290 (491)
Q Consensus 279 ~~~~~~l~s~~~ 290 (491)
++.+|++...
T Consensus 180 --q~~LLVStl~ 189 (726)
T KOG3621|consen 180 --QSYLLVSTLT 189 (726)
T ss_pred --cceehHhhhh
Confidence 4555554443
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=3.2e-06 Score=80.54 Aligned_cols=266 Identities=12% Similarity=-0.004 Sum_probs=154.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEE-----EEEECC--CCCeEEEEECCCeEEEEECCCCccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-----~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 208 (491)
+..+++++.+|.|.-+|..+|+.+-+....... .... .+.-.| ++..++.++.++.+..+|.++|+......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 557777778889999999888666554332210 0000 000011 35567778889999999999998766554
Q ss_pred cccccccccccccCCCCceecEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEecCCC
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESG 282 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~ 282 (491)
... .+.+ ... .+..+++++.++.|+-+|..+++.+-+.......+ .+.... +
T Consensus 148 ~~~-----------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~ 205 (394)
T PRK11138 148 VAG-----------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---F 205 (394)
T ss_pred CCC-----------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---C
Confidence 322 1111 111 23467778889999999999999876664321110 111121 2
Q ss_pred CEEEEEeCCCeEEEEecccccCCCceeeEecccc----C---cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~---~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
..++.++.+|.+..+|.. +++.+....... . ....+..+| .+..++.++.+|.+..+|..+++..-.
T Consensus 206 ~~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred CEEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 356677788888888876 444333221100 0 001111122 244677777889999999887432111
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
...... ..+. ..+..|+.++.+|.++.+|..+|+.+
T Consensus 282 ----------------------------------~~~~~~--------~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 282 ----------------------------------REYGSV--------NDFA--VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ----------------------------------ecCCCc--------cCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 000000 0011 14567888889999999999999877
Q ss_pred EeeccCC-CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 434 AALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 434 ~~~~~h~-~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.....-. ....+... .+..|+.++.||.|++.|..+++.
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 6543211 11222222 245678888999999999877653
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=5.8e-09 Score=62.40 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=36.9
Q ss_pred CcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
++++..+++|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=3.5e-06 Score=80.29 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=153.5
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEECCCCCeEEEEECCCeEEEEECCCCcccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 213 (491)
++..++.++.+|.+.-+|..+|+.+-+..... .+.+ ... .+..+++++.++.|..+|.++|+...........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 35567778889999999999986555433221 1211 111 2445667788899999999999876544322100
Q ss_pred ccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC----C---eeEEEEec-CCCCEE
Q 011179 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----D---VNTVCFGD-ESGHLI 285 (491)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~----~---v~~~~~~~-~~~~~l 285 (491)
+.. .+...++. .+..++.++.+|.+..+|..+++.+-....... . ...+..+| -.+..+
T Consensus 193 --~~~-----~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 193 --LTL-----RGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred --ccc-----cCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 000 00011111 123577788899999999998876544321100 0 00111111 024567
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeee
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
+.++.+|.+..+|.. +++.+....- .....+.. .+..++.++.+|.+..+|..+++..-...
T Consensus 260 y~~~~~g~l~ald~~----tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~---------- 321 (394)
T PRK11138 260 YALAYNGNLVALDLR----SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS---------- 321 (394)
T ss_pred EEEEcCCeEEEEECC----CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc----------
Confidence 777889999999987 5554433221 11112222 35577778889999999987743211100
Q ss_pred eeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeee
Q 011179 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
... .. ...+|.+ .+.+|+.++.+|.|+++|..+|+.+...+.....+.+
T Consensus 322 ---------------------~~~-~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 322 ---------------------DLL-HR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred ---------------------ccC-CC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 000 00 0011111 2456788999999999999999998877643333322
Q ss_pred -eEecCCCCeEEEEeCCCcEEEEcC
Q 011179 446 -CSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 446 -~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
..+ .+..|+.++.||.|+.++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2447888899999988875
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.85 E-value=2.6e-05 Score=69.04 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=125.5
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEEC-CCCCeEEEEECCCeEEEEECCCCccccc
Q 011179 129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 129 ~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~ 206 (491)
++.|.+ +|.++++--..+.|..|+..++.... ..... ...+++. +++. |+.+...+ +.++|..+++...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 467888 67777777778999999999874322 12222 5667777 6654 55555444 55569998876555
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 278 (491)
....... ......+++++.++|++.++.... |.|+.++.. ++... +...-...+.|+|+
T Consensus 76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFS 142 (246)
T ss_dssp EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEE
T ss_pred eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEEC
Confidence 5442110 012378899999999966665433 568888887 55433 33445667899998
Q ss_pred cCCCCEE-EEEeCCCeEEEEecccccCCCc---eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 279 DESGHLI-YSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
++++.| ++-+..+.|..+++........ ....+....+..-.+++..+|++.++....+.|.++|...
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 667655 5667788898888852211111 1112222223477899999999888888889999999763
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=5.3e-06 Score=72.80 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=144.2
Q ss_pred EEEEEECC-CCCeEEEEECCC-eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--
Q 011179 172 VTDTSLSP-DQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-- 247 (491)
Q Consensus 172 v~~~~~sp-~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-- 247 (491)
...++.+| ....++.+-.-| ...+||..+++........... . ..|| -.|++||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---H-----FyGH------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---H-----FYGH------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---E-----EecC------EEEcCCCCEEEEecccc
Confidence 44678899 456666776666 5789999998876544332211 0 1123 589999999998644
Q ss_pred ---CCeEEEEECC-CCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC------------------CCeEEEEecccccCC
Q 011179 248 ---DDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD------------------DNLCKVWDRRCLNVK 305 (491)
Q Consensus 248 ---dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~ 305 (491)
.|.|-|||.. +.+.+.++..|.-....+.+. +++..|+.+.. +..+.+-|.. +
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~----s 147 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR----S 147 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC----C
Confidence 4789999998 667777888887777888897 77866666531 1233344444 4
Q ss_pred CceeeE--e--ccccCcEEEEEEcCCCCEEEEeeCCCc-------EEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 306 GKPAGV--L--MGHLEGITFIDSRGDGRYLISNGKDQA-------IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 306 ~~~~~~--~--~~~~~~i~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
++.+.. + ..|.-.|..+++.++|..++..-..|. |.+++..
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---------------------------- 199 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---------------------------- 199 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC----------------------------
Confidence 555544 3 337778999999999876655433321 2222211
Q ss_pred ccccCCCCceEEEEeCCce-eEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCC
Q 011179 375 RDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 452 (491)
..+..+..... ........-+.+++.++.++++.+- .|.+.+||..+++.+....- ..+..++-.+++
T Consensus 200 --------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 200 --------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred --------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 11111111110 0111122334466778888876665 67899999999999877653 346667777666
Q ss_pred CeEEEEeCCCcE
Q 011179 453 PMLVSSSWDGDV 464 (491)
Q Consensus 453 ~~l~s~~~Dg~v 464 (491)
+++|.+ .|.+
T Consensus 270 -f~~ssG-~G~~ 279 (305)
T PF07433_consen 270 -FLVSSG-QGQL 279 (305)
T ss_pred -eEEeCC-CccE
Confidence 555554 4543
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.1e-06 Score=75.84 Aligned_cols=224 Identities=18% Similarity=0.152 Sum_probs=133.9
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
+|+|..||..+|+......+..... ...+. ..+++..+++++.++.|+.||..+++.+-+... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~--------------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG--------------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-P 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS--------------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-S
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC--------------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-c
Confidence 6788999998888765554321110 12211 223566788888999999999999998877764 2
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-cccc---CcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHL---EGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
..+..... ..+..++.++.++.++.+|.. +++.+... .... ..........++..++++..++.|..+|+
T Consensus 66 ~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 66 GPISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp SCGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ccccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 22222122 235566777788899999987 66666663 2221 11122222223778888888999999999
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee--E---eeEEEEecccccCCCcEEEEEecCC
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL--R---TLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~s~~~~~l~~~~~dg 420 (491)
++++. +-.+...... . ........+.+. ++ .++.+..++
T Consensus 140 ~tG~~----------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g 183 (238)
T PF13360_consen 140 KTGKL----------------------------------LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG 183 (238)
T ss_dssp TTTEE----------------------------------EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred CCCcE----------------------------------EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence 98432 2222221100 0 000001111222 34 677777777
Q ss_pred eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+..+|+.+++.+.... ...+..+ ..+++..|+.++.++.|..||+.+++.
T Consensus 184 ~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 54444999999765333 2223332 346777888888999999999988753
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.82 E-value=1.1e-05 Score=81.35 Aligned_cols=217 Identities=16% Similarity=0.118 Sum_probs=137.2
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
-.+.|.++.|..+++-++.+...|.|.+-|..+... . ........|.+++|+||+..++..+..+++.+-+-. -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-e---ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-E---IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-e---eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-cc
Confidence 347999999999999999999999999998887521 1 222334479999999999999999888887765421 11
Q ss_pred ccccccc-------------ccccccccccccCC----------------CCceecEEEEEEcCCCCEEEEE-----eCC
Q 011179 203 MESLANV-------------TEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSD 248 (491)
Q Consensus 203 ~~~~~~~-------------~~~~~~~~~~~~~~----------------~~h~~~i~~~~~s~~~~~l~~~-----~~d 248 (491)
.+....+ .-.....+|..... ..-...=+++.|--||+++|+. ...
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1111100 00000001110000 0011123458999999999883 233
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe---CCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
..|+|||-+ +.+-..-....+.-.+++|- |.|.++++-. .|+.|.++..+... .+.....+......+..++|+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeec
Confidence 789999987 44332222334455789996 6888888753 45678898864221 222222233333448999999
Q ss_pred CCCCEEEE---eeCCCcEEEEeCCC
Q 011179 326 GDGRYLIS---NGKDQAIKLWDIRK 347 (491)
Q Consensus 326 ~~~~~l~s---~~~dg~i~iwd~~~ 347 (491)
.++..|++ ......|++|-+.+
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecC
Confidence 99999987 44555599999876
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.77 E-value=2.2e-05 Score=71.26 Aligned_cols=197 Identities=19% Similarity=0.156 Sum_probs=101.1
Q ss_pred EEEcCCCCEEEEEEc-C--CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccc
Q 011179 130 SQFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 130 ~~~s~dg~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~ 206 (491)
=+|.+||+.|+.++. | ..+.+.|+.+++..+... ..+ .......++|+++.++.......|+-.|+++.+...+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 478999987776654 4 467778888884443322 111 1122456779999888877777899999999887666
Q ss_pred cccccccccccccccCCCCceecEEEEEE--cCCCCEEEEEe----------------------CCCeEEEEECCCCeee
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLS 262 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~ 262 (491)
..++..- +-...| +.|+..++-.- ....|.-.|+.+++..
T Consensus 118 y~~p~~~----------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 118 YEVPDDW----------------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EE--TTE----------------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EECCccc----------------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 6555422 222333 33555443221 1234777788888764
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeC---CCe-EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee---
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSD---DNL-CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--- 335 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--- 335 (491)
..+ .-...+..+.|+|.+..+|+.|-+ +.. -|||-++.......++..-. ..+.+..=-|.|||..|.--+
T Consensus 182 ~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~ 259 (386)
T PF14583_consen 182 VVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTP 259 (386)
T ss_dssp EEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred EEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecC
Confidence 444 456778999999888888888754 332 47887763322223332221 123344556899998776422
Q ss_pred --CCCcEEEEeCCC
Q 011179 336 --KDQAIKLWDIRK 347 (491)
Q Consensus 336 --~dg~i~iwd~~~ 347 (491)
.+..|.-+|+.+
T Consensus 260 ~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 260 GGQDFWIAGYDPDT 273 (386)
T ss_dssp TT--EEEEEE-TTT
T ss_pred CCCceEEEeeCCCC
Confidence 233456666655
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=2.1e-05 Score=69.07 Aligned_cols=202 Identities=15% Similarity=0.199 Sum_probs=130.6
Q ss_pred CceEEEEEcC-CCCEEEEEEcCCe-EEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-----CCeEEEEE
Q 011179 125 SRAYVSQFSA-DGSLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVD 197 (491)
Q Consensus 125 ~~i~~~~~s~-dg~~la~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~iw~ 197 (491)
.+...++.+| ++..++.+-.-|+ ..+||..++.....+....+ +.--=--.|++||++|.+.-. .|.|-|||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 4456788999 4556677766654 78899999977665443322 111223679999999988643 47899999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe------------------CCCeEEEEECCCC
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------SDDCIYVYDLEAN 259 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------------------~dg~i~vwd~~~~ 259 (491)
... ....+... +. |.-....+.+.|||+.|+++. .+.++...|..++
T Consensus 84 ~~~-~~~ri~E~---------~s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 84 AAR-GYRRIGEF---------PS-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred CcC-CcEEEeEe---------cC-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 982 22222211 11 222455688999998888764 2345677788888
Q ss_pred eeeEEEe----ccCCCeeEEEEecCCCCEEEEEeCCC-------eEEEEecccccCCCceeeE-------eccccCcEEE
Q 011179 260 KLSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGV-------LMGHLEGITF 321 (491)
Q Consensus 260 ~~~~~~~----~h~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~-------~~~~~~~i~~ 321 (491)
+.+.+.. .|...|..+++. .++..++..-..| .|-+++.. ..+.. ...-...+-+
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g------~~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRG------GALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCC------CcceeccCChHHHHhhCCceEE
Confidence 8776633 377889999996 6666655544333 23444432 11111 1233467899
Q ss_pred EEEcCCCCEEEEee-CCCcEEEEeCCCCC
Q 011179 322 IDSRGDGRYLISNG-KDQAIKLWDIRKMS 349 (491)
Q Consensus 322 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 349 (491)
|++++++.++++.+ ..+.+.+||..+..
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 99999998876555 56789999998843
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.76 E-value=2.1e-06 Score=86.39 Aligned_cols=236 Identities=17% Similarity=0.196 Sum_probs=139.7
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
..|.++.|..+...++.+...|.|.+-|.++........+.. .|.+++|+||.+.++..+..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~-----------------GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN-----------------GISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC-----------------ceEEEeecCCCcEEEEEeCCc
Confidence 579999999999999999999999999888776654443332 799999999999999998888
Q ss_pred eEEEEECCCCeeeEEEe-----ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEE
Q 011179 250 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (491)
++.+-+- +..++.... ...+..-.+-|. .....| -|+ .|.....+... ..+..... .-.+.=++|.|
T Consensus 132 tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwG-rkeTqf-rgs-~gr~~~~~~~~---~ek~~~~~-~~~~~~~~IsW 203 (1265)
T KOG1920|consen 132 TLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWG-RKETQF-RGS-EGRQAARQKIE---KEKALEQI-EQDDHKTSISW 203 (1265)
T ss_pred EEEEEec-cccchhccccccccccccccceeccc-ccceee-ecc-hhhhccccccc---ccccccch-hhccCCceEEE
Confidence 7766542 222221111 111223344443 111111 221 12222211110 00101111 11223357899
Q ss_pred cCCCCEEEEee-----CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 325 RGDGRYLISNG-----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 325 ~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
..||+++++.. ....|++||-.. ...... .+...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~s----------------------------------------e~~~~ 242 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTS----------------------------------------EPVEG 242 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccc-hhhccc----------------------------------------Ccccc
Confidence 99999999832 237899999762 111100 11112
Q ss_pred EEecccccCCCcEEEEEe---cCCeEEEEECCCCcE----EEeeccCCCCeeeeEecCCCCeEEE---EeCCCcEEEEcC
Q 011179 400 CHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEF 469 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s---~~~Dg~v~iw~~ 469 (491)
..-+.+|-|.|..+++-. .|+.|.+|.- +|-. ...+.....+|..++|+.++..|++ ......|++|-+
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 222335666788888753 3567999985 3332 2223333445999999999998887 455555999987
Q ss_pred CCC
Q 011179 470 PGN 472 (491)
Q Consensus 470 ~~~ 472 (491)
.+-
T Consensus 322 ~Ny 324 (1265)
T KOG1920|consen 322 GNY 324 (1265)
T ss_pred cCe
Confidence 653
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.71 E-value=1.1e-05 Score=71.78 Aligned_cols=279 Identities=17% Similarity=0.148 Sum_probs=158.4
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE----------CCCeEEEEECCCCcccccccccccccc
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
+.+.|+|.++++.+..+..... -.+..+|+++.+.+++ ..-.|.+||..+-.......++..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~-----~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL-----GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS-----EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecccC-----CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999999876655443332 2366799999888753 234799999998876655554432111
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCe
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 293 (491)
... .....++++.|++++++.. -...|.|.|+..++.+..+.-. . +...| |..++-|.+-+.||.
T Consensus 92 ~~~---------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iy-P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 92 QVV---------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIY-PSGNRGFSMLCGDGS 158 (342)
T ss_dssp -BS-----------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEE-EEETTEEEEEETTSC
T ss_pred eec---------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEE-ecCCCceEEEecCCc
Confidence 100 0223468899999888754 3567999999999988777432 1 22333 444567888899999
Q ss_pred EEEEecccccCCCceeeE----eccccCcE-EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeee
Q 011179 294 CKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
+.-..+.. .++.... +....+++ ..-++...+..++--+.+|.|+--|+........ -.+.
T Consensus 159 l~~v~Ld~---~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-----------~~~~ 224 (342)
T PF06433_consen 159 LLTVTLDA---DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-----------KPWS 224 (342)
T ss_dssp EEEEEETS---TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-----------EEEE
T ss_pred eEEEEECC---CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-----------Cccc
Confidence 98888762 2332221 11122222 1223444555566677888888888876431110 0000
Q ss_pred cCCCCC-ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec--------C--CeEEEEECCCCcEEEeec
Q 011179 369 DYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------D--SCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 369 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--------d--g~i~iwd~~~~~~~~~~~ 437 (491)
...... ..-..+.+-.+. ++.+..+.|++--. | ..|.++|+.+++.+.++.
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~------------------A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLI------------------AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-E------------------EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE
T ss_pred ccCccccccCcCCcceeee------------------eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe
Confidence 000000 000000011111 12222222222111 1 148888999999999887
Q ss_pred cCCCCeeeeEecCCCC-eEEEE-eCCCcEEEEcCCCCCCC
Q 011179 438 YHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~-~l~s~-~~Dg~v~iw~~~~~~~~ 475 (491)
. ..++.+++.+.|.+ +|++. ..++.|.+||..+++..
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 3 34688999999877 66554 45899999999887543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-06 Score=75.33 Aligned_cols=238 Identities=20% Similarity=0.201 Sum_probs=135.4
Q ss_pred CceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q 011179 225 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 303 (491)
+|...|.+++|+|..+ .+..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|+.|...|.|.+||++..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~- 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP- 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence 4566899999999777 7888999999999999999998888877 889999998677889999999999999999832
Q ss_pred CCCceeeEecc--ccCcEEEEEE------cCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc---------------c
Q 011179 304 VKGKPAGVLMG--HLEGITFIDS------RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR---------------S 360 (491)
Q Consensus 304 ~~~~~~~~~~~--~~~~i~~~~~------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~ 360 (491)
..++..+.+ ...+|..++. .+.|.+|+....+ +..|.+.............. .
T Consensus 269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 233333332 2234444432 2234445444433 55666554322222111000 0
Q ss_pred ceeeeeeecCCCCCccccC----CCCceEEEEe-CCceeEeeEEEEeccc--ccCCCcEEEE-EecCCeEEEEECCCCcE
Q 011179 361 YEWDYRWMDYPPQARDLKH----PCDQSVATYK-GHSVLRTLIRCHFSPV--YSTGQKYIYT-GSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~--~s~~~~~l~~-~~~dg~i~iwd~~~~~~ 432 (491)
....++.-+..|..+.+.. ..+..+..-+ ++.. ....+.....+ -.++.++|+. |...+.+.+||..+++.
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G-s~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG-SKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccC-CcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 0011111111111111100 0011111100 0000 00000000011 1234555554 45567899999999999
Q ss_pred EEeeccCCCCeeeeEecCC-C-CeEEEEeCCCcEEEEcCCC
Q 011179 433 VAALKYHTSPVRDCSWHPS-Q-PMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~sp~-~-~~l~s~~~Dg~v~iw~~~~ 471 (491)
+.++.. ..+|.+++...- + .+|++-. |..++|+..+.
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 999874 478888876543 3 3676665 55788887653
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.4e-07 Score=80.28 Aligned_cols=259 Identities=15% Similarity=0.046 Sum_probs=162.7
Q ss_pred CceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
|+..|+.+. ..-.+++.+++.||.++.|.-..-.......... .|-..|.+++.+-++..+.+.+.
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------------aHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------------AHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhH-------------HHHHHHHhhhccccceeEeeccC
Confidence 444455443 3456899999999999999754322222222111 35557888999999998999777
Q ss_pred -CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCC----CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 248 -DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 248 -dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
|..++++|+++-..+.-++- ......+.|....| .+-++.-.++.+.++|-... ..+....-.-|..+|..+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cccceeEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEEE
Confidence 99999999987655432221 11112222321222 22333346789999997622 112333344589999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCC-CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee---EeeE
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLI 398 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 398 (491)
.+.+.+..+++....|.|.-|.... .+-+. ......++..... ....
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----------------------------~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----------------------------TNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCcc-----------------------------ccccccccccchhhcccccc
Confidence 9999999999999999999999873 11000 0000011100000 0001
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc--------------------------------CC-CCeee
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--------------------------------HT-SPVRD 445 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------------h~-~~v~~ 445 (491)
....+..++|++..+.+-+.|..|++++..+|+.+..+.. |. ..-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 1112335778999999999999999999999876654421 11 23456
Q ss_pred eEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 446 CSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 446 ~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.|...+++|+-++-=| |++.++.++.
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 77888899999887665 7888887764
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.67 E-value=4.9e-07 Score=87.94 Aligned_cols=184 Identities=14% Similarity=0.209 Sum_probs=127.8
Q ss_pred CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011179 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 181 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+..++.|+....+..+|+.+.+..+...+... .|+-++. +++.+.+|...|+|.+-|..+.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~----------------~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~ 208 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS----------------GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE 208 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC----------------ceEEEEe--cCcEEEeecccceEEeecCCcCc
Confidence 45567777777788888887766555443221 3444443 57899999999999999999999
Q ss_pred eeEEEeccCCCeeEEEEecCCCCEEEEEeC---------CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC-CCE
Q 011179 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRY 330 (491)
Q Consensus 261 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 330 (491)
.+.++..|.+.|..+... |++|++++. |..|+|||+| .-+.+..+.-+.++ ..+.|+|. ...
T Consensus 209 ~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLR----mmral~PI~~~~~P-~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 209 TIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLR----MMRALSPIQFPYGP-QFLRFHPSLTTR 280 (1118)
T ss_pred eeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhh----hhhccCCcccccCc-hhhhhcccccce
Confidence 999999999999988763 788888874 5678999998 44444444334333 45677875 456
Q ss_pred EEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
+++++..|...+-|..+...+ ....+.-+.....+ ....+|+++
T Consensus 281 ~~V~S~sGq~q~vd~~~lsNP--------------------------------~~~~~~v~p~~s~i----~~fDiSsn~ 324 (1118)
T KOG1275|consen 281 LAVTSQSGQFQFVDTATLSNP--------------------------------PAGVKMVNPNGSGI----SAFDISSNG 324 (1118)
T ss_pred EEEEecccceeeccccccCCC--------------------------------ccceeEEccCCCcc----eeEEecCCC
Confidence 888889999999985442211 11111111111112 223567799
Q ss_pred cEEEEEecCCeEEEEE
Q 011179 411 KYIYTGSHDSCVYVYD 426 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd 426 (491)
..++.|..+|.|.+|.
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9999999999999997
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.8e-06 Score=81.89 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=98.3
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-----CCeEEEEECCCeEEEEECCC-Cccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGS-GTMESLAN 208 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~i~iw~~~~-~~~~~~~~ 208 (491)
+|.++++|+.||+|.|-.+.+++........ -++.+++++|+ .+.+++|+..| +.++.-.- +....+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 4999999999999999999887555544322 27999999998 47899999888 76664321 010000
Q ss_pred cccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC------eeEEEEecCCC
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD------VNTVCFGDESG 282 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~------v~~~~~~~~~~ 282 (491)
.. ....++|.++.|. |+++|-++.+| |+|||..+++.+..+...... ...+.|. +.
T Consensus 155 ~l-------------~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~ 216 (846)
T KOG2066|consen 155 VL-------------SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DE 216 (846)
T ss_pred ee-------------ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CC
Confidence 00 1123489999996 77899998888 999999999887776543332 3467774 34
Q ss_pred CEEEEEeCCCeEEEEecc
Q 011179 283 HLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~ 300 (491)
..|+.|-.| +|+|..++
T Consensus 217 ~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 217 DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CeEEEecCC-eEEEEEEe
Confidence 556666544 78888876
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=1.8e-05 Score=76.15 Aligned_cols=257 Identities=16% Similarity=0.202 Sum_probs=136.7
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeecCCCce----------eEE-----------------EEEE---CCCCCeEEEEE
Q 011179 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRW----------TVT-----------------DTSL---SPDQRHLVYAS 188 (491)
Q Consensus 139 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~v~-----------------~~~~---sp~~~~l~~~~ 188 (491)
+.+|+..|.|+|+-+.+++.+..+........ .|. .+.+ ..||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 66888999999999988866665433321100 011 0111 12567777765
Q ss_pred C-CCeEEEEECCCCccccccccccccc--cccccccCCCCceecEE-----EEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 011179 189 M-SPIVHIVDVGSGTMESLANVTEIHD--GLDFSAADDGGYSFGIF-----SLKFSTDGRELVAGS-SDDCIYVYDLEAN 259 (491)
Q Consensus 189 ~-d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~-----~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 259 (491)
. +..|...+++..++..+..++.... ++.+.. ..++..|. .+=++|||+.+...+ ..+.+.+.|.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~---~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQK---IPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccc---cCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 4 4556666666555544444433221 111110 01111222 234566777554333 3466888898887
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEe----------------------------------------CCCeEEEEec
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS----------------------------------------DDNLCKVWDR 299 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------------------------------------~dg~i~iwd~ 299 (491)
+...++.-- +....+.++ +++.++++.+ .++.|.+.|.
T Consensus 226 eV~~qV~Vd-gnpd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 226 EVAWQVMVD-GNLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred eEEEEEEeC-CCcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 776665432 233555665 4566665554 1234666665
Q ss_pred ccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
+.....+..+.....-......+.++|||+++++++. +.++.+.|+.+..........
T Consensus 304 ~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~--------------------- 362 (635)
T PRK02888 304 RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK--------------------- 362 (635)
T ss_pred CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC---------------------
Confidence 4100001122222223345578999999999877654 889999999885431110000
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
+.+..+....-.. . ....+|+++|+...+-.-|..|..||+..
T Consensus 363 -~~~~vvaevevGl--G-----PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 -PRDAVVAEPELGL--G-----PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -ccceEEEeeccCC--C-----cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0001111111100 0 01125677888888888899999999876
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=1e-07 Score=56.89 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=36.0
Q ss_pred ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 011179 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 344 (491)
+++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=8.7e-05 Score=62.28 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=90.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
..+++.|+..+.+.--|..+|...-+..... .|.+-+.- -|++++.|...|.+.+.+.++|.........+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 3577788888888888998886555433222 33333332 4778999999999999999999665444333211
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
.+ .....+++..+..|+.|++.+..|..+..++...+...+-..+-+..+-++.+. .+...|.+.
T Consensus 96 -------------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly-~a~t~G~vl 160 (354)
T KOG4649|consen 96 -------------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY-AAITAGAVL 160 (354)
T ss_pred -------------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEE-EEeccceEE
Confidence 11 234567899999999999999999999988877654433333444443344444 344444443
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.5e-05 Score=75.17 Aligned_cols=206 Identities=12% Similarity=0.068 Sum_probs=125.2
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCcee-EEEEEECCCCCeEEEEECCC-----eEEEEECCCCcc
Q 011179 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (491)
Q Consensus 130 ~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~-----~i~iw~~~~~~~ 203 (491)
-+|++.+..++.|+.+|.|.+.+-.- .+ ......+... |..+-...+..+|++.+.|+ .|+||+++.-+.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~--~~--~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF--QL--IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc--ee--eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 45778889999999999887776432 22 1222333334 44443333446787776654 599999875432
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--C--CeeeEEEeccCCCeeEEEEec
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--A--NKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~--~--~~~~~~~~~h~~~v~~~~~~~ 279 (491)
.........+.-. .........++.+++.+.+-+.+|+|-.+|.|..+.-+ . +....-......+|+.+++.
T Consensus 105 n~sP~c~~~~ri~---~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~- 180 (933)
T KOG2114|consen 105 NNSPQCLYEHRIF---TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR- 180 (933)
T ss_pred CCCcceeeeeeee---ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-
Confidence 1111111001100 00011133478999999999999999999999988422 1 11111122346799999997
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.++..++.......|.+|.+. ........+..|...+.|..+++....+++++.. .+.+|+...
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~---gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLS---GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEecceeEEEEec---CCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 555553333345688999986 1222344467777889999998766656665544 589999875
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.53 E-value=6.6e-05 Score=70.26 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=62.3
Q ss_pred cCCCCEEEEEE---------cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 133 s~dg~~la~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
|||+++++... ..+.+.|||+.++.... +... ...+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68999888743 24679999999973332 2221 33678899999999999886 67899999887755
Q ss_pred cccccccc--cccccc-ccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 204 ESLANVTE--IHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 204 ~~~~~~~~--~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
..+..-.. ...|.. +-.... --..-..+.||||+++|+...
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEE--v~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEE--VFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES--TTTEEESB--HHHHHH--TSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccccceeEEcCccceecccc--ccccccceEECCCCCEEEEEE
Confidence 44333210 000000 000000 000124588999999888754
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.53 E-value=5.2e-05 Score=65.73 Aligned_cols=210 Identities=14% Similarity=0.145 Sum_probs=115.9
Q ss_pred ccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
+.+.+-...+..++|+|+.+ ++++....+.|..++.+ |+.+.++... +. +..-.+++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-GF-GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-CC-CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 44556677799999999865 55566677888888874 6666665443 32 257788888888777766568999999
Q ss_pred ECCCCcc-ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeeeEE--Ee----
Q 011179 197 DVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLR--IL---- 266 (491)
Q Consensus 197 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~--~~---- 266 (491)
++..... .......... + .....+...+..++|++.++.|+++-...-..+|.+.. ...+.. ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~----l--~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKIS----L--GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEeccccccchhhceEEe----c--ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 9854321 1111111110 0 01112334688999999888888887766666666543 111111 11
Q ss_pred --ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc---------CcEEEEEEcCCCCEEEEee
Q 011179 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 267 --~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~s~~ 335 (491)
.....+..+++.|..+++++.......|..+|. .++++..+.-.. ..--.|+|.++|++.+++
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs- 239 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS- 239 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-
Confidence 234568899999888889999999999999995 455554433211 246789999999766654
Q ss_pred CCCcEEE
Q 011179 336 KDQAIKL 342 (491)
Q Consensus 336 ~dg~i~i 342 (491)
.-+..++
T Consensus 240 EpNlfy~ 246 (248)
T PF06977_consen 240 EPNLFYR 246 (248)
T ss_dssp TTTEEEE
T ss_pred CCceEEE
Confidence 4444443
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.1e-06 Score=82.65 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=125.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...++|++++ ++.|+.|+.+|.|++++.+..- ... ..|... ..+|.++++|+.||.|.|-.+.+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~---~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN---FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc---cccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4567888886 5789999999999999987541 111 122211 56899999999999999999887766
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCC-----CCEEEEEeCCCeEEEEECC--CCeeeEEEeccCCCeeEEE
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~ 276 (491)
.....+.. ++.+++++|+ .+.+++|+..| +.++.-. ..+....+....++|.++.
T Consensus 106 ~~~~df~r-----------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 106 ITQYDFKR-----------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK 167 (846)
T ss_pred ceeEecCC-----------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence 54443332 7999999997 46799999988 7776432 1122223556678999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcE------EEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI------TFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
|. |+++|-++.+| |++||+. ..+.+..+......+ ..+.|.++.+ |+.| ...+|+|..++.
T Consensus 168 W~---g~lIAWand~G-v~vyd~~----~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 168 WR---GNLIAWANDDG-VKVYDTP----TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred ec---CcEEEEecCCC-cEEEecc----ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 96 78888887775 6999987 444444443322222 3467776654 4434 444688888873
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00014 Score=61.09 Aligned_cols=142 Identities=19% Similarity=0.048 Sum_probs=93.8
Q ss_pred CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011179 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 181 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
..+++.|+..+.+.-.|..+|+......... .|.+-+.- -|++++.|+..|.+++.+.+++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 3567778888999999999888754433221 22222222 46789999999999999999998
Q ss_pred eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcE
Q 011179 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 261 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i 340 (491)
....+.. .+.|.+-+-.++++.++..|+.|++.+.-|.+ ...++...+-......+-+..|-...|..+...|.+
T Consensus 85 ~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 85 QIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred heeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 7766643 33444444446789999999999999999998 666666654433333344455533344445555555
Q ss_pred EEEeC
Q 011179 341 KLWDI 345 (491)
Q Consensus 341 ~iwd~ 345 (491)
.--..
T Consensus 160 lavt~ 164 (354)
T KOG4649|consen 160 LAVTK 164 (354)
T ss_pred EEEcc
Confidence 44433
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=2.8e-06 Score=79.53 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+.+.|.|++++|+...|+.|+.||.|.+||...+.. .... ..-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAK---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeee---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5688999999999999999999999999999987622 2211 1225788999999999999999999999998755
Q ss_pred cc
Q 011179 202 TM 203 (491)
Q Consensus 202 ~~ 203 (491)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 44
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=0.00035 Score=62.38 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=95.5
Q ss_pred EEEEEcCCCCEEEEEE----------cCCeEEEEECCCCeEEEEEeecCCCce----eEEEEEECCCCCeEEEEEC--CC
Q 011179 128 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SP 191 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~--d~ 191 (491)
-.+..||||+.+.+++ ..-.|.+||..+-.....+..+..++. ....++++.|++++++... ..
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888754 244699999999877777777655332 2234678899998887544 45
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEe----
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL---- 266 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~---- 266 (491)
.|.|.|+..++.......+. +..+--+. .+.+.+-|.||.+....+. .|+...+..
T Consensus 119 SVtVVDl~~~kvv~ei~~PG------------------C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG------------------CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS------------------EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred eEEEEECCCCceeeeecCCC------------------EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 79999999888765544432 22222222 2457888899999998887 455443221
Q ss_pred ccCCCe-eEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 267 AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 267 ~h~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
.-..++ ..-++. ..+..++--+.+|.|+--|+.
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEET
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEecc
Confidence 111222 233443 345556667889999988885
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=0.00013 Score=68.62 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=77.6
Q ss_pred EEEEEEcC-CCCEEEEE----eCCCe----EEEEECCCCeeeEE---EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEE
Q 011179 230 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKLSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (491)
Q Consensus 230 i~~~~~s~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 297 (491)
..++.|+. +...+.+. +.+|. -.+|++..++.... -......|.+++++ ++...++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence 45566665 33334332 22332 35666665543211 12577899999997 788899999999999999
Q ss_pred ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
|.. .+ +..+....-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 287 D~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 287 DTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 975 22 222333445578899999999999999999999999865
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=6.5e-06 Score=79.78 Aligned_cols=187 Identities=13% Similarity=0.190 Sum_probs=115.1
Q ss_pred EEEEEcCCCCEEEEEE----cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 128 YVSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
+-..|+|...++|+++ ..|.|.||- ++|++ ++.....- .+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP-qr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP-QRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCC-Ccccccce---ehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3457888888888776 368888884 45542 22222222 467899999998899998899999999876654
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--Eecc--CCCeeEEEEe-
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAH--TSDVNTVCFG- 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h--~~~v~~~~~~- 278 (491)
..+. ..|+.+|..+.||++|..++++..-|.|.+|.......+.. +..| ...++-++|-
T Consensus 94 htv~----------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL 157 (1416)
T KOG3617|consen 94 HTVV----------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRL 157 (1416)
T ss_pred eeec----------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEec
Confidence 3222 14777999999999999999999999999998763322221 1122 2334444432
Q ss_pred cCCCC------EEEEEeCCCeEE-EEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 279 DESGH------LIYSGSDDNLCK-VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
++++. ..++.+++..+- .++.+ ........ .|. =.|+|..++.++.+|+|+-.|-..
T Consensus 158 ~~~~Ee~~~laKaaVtgDe~alD~~fnwk----~~~a~rs~-~ks-------gv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 158 SYDREEKFKLAKAAVTGDESALDEPFNWK----ESLAERSD-EKS-------GVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred CCChHHhhhhhhhhccCchhhhcccccCc----cchhhccc-ccc-------CCCCCcEEEEEcCCceEEEEcCCC
Confidence 12211 123333333332 33332 11111111 111 246777888888888888888654
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=1.8e-07 Score=90.54 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=91.1
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC--eEEEEecccc
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCL 302 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~ 302 (491)
.|....+|++|+-+.+.|++|+..|.|++|++.+|.......+|..+|+.+.=+ .+|..+++.+.-. -..+|++..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASS- 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhcccc-
Confidence 455689999999999999999999999999999999999999999999999987 6676666554432 467899862
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
...+.+.+. .-.++.|+.....-+.|.......+||+.+....
T Consensus 1177 --~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1177 --TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred --ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 344444443 2357888876555555666667899999985443
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.41 E-value=0.00077 Score=65.99 Aligned_cols=277 Identities=14% Similarity=0.115 Sum_probs=149.9
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCC---CceeEE--EEEECCCCCeEEEEECCCeEEEEECCCCccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~--~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 210 (491)
+..+..++.++.|.-.|..+|+.+-+...... ....+. .+... ++..++.++.++.|.-+|.++|+..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566777789999999998865544322211 000010 01111 2267788888999999999999876554432
Q ss_pred cccccccccccCCCCceecEE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeeEEEeccCCC---------
Q 011179 211 EIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD--------- 271 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~h~~~--------- 271 (491)
.... ....+. +..+. +..+++++ .++.|+.+|..+++.+-++......
T Consensus 140 ~~~~-----------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 140 DQVP-----------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCcC-----------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 2100 000010 11111 23455553 3678999999999877665432110
Q ss_pred -----------e-eEEEEecCCCCEEEEEeCCC------------------eEEEEecccccCCCceeeEeccccCcEE-
Q 011179 272 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMGHLEGIT- 320 (491)
Q Consensus 272 -----------v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~- 320 (491)
+ ...++. +.+..++.++.++ .|.-.|.. +++.+..+..-.....
T Consensus 207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence 1 122332 3456777777665 67777876 5666555431111000
Q ss_pred -----EEEEc----CCCC---EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 321 -----FIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 321 -----~~~~~----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
...+. -++. .++.++.+|.+...|.++++..-.....
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------------------- 330 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------------------- 330 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------
Confidence 00111 1333 5777888999999999885533221100
Q ss_pred eCCceeEeeEEEEecccccCCCcEEEE------------------EecCCeEEEEECCCCcEEEeeccCC--------CC
Q 011179 389 KGHSVLRTLIRCHFSPVYSTGQKYIYT------------------GSHDSCVYVYDLVSGEQVAALKYHT--------SP 442 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------~~~dg~i~iwd~~~~~~~~~~~~h~--------~~ 442 (491)
...+..+| ..++. ...+|.|.-.|+.+|+.+-...... .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 11211 2245778888888888776654320 11
Q ss_pred eeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 443 v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
...-.....+..|+.++.||.|+.+|..+++...
T Consensus 397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred ccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 1111111255688888999999999998887553
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00011 Score=69.41 Aligned_cols=183 Identities=25% Similarity=0.309 Sum_probs=109.4
Q ss_pred cEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEE--ecccc
Q 011179 229 GIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW--DRRCL 302 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~ 302 (491)
.+..-+|+|+++.++... .. ..++++|+++++....+. ..+.-...+|+|....++++...||...|| |+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~-- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD-- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--
Confidence 566678999988765542 23 469999999887655443 334445678885444555666677765555 554
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeC-CCc--EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
++....+..-.+.-+.-.|+|||+.|+..+. .|. |.+++......
T Consensus 271 ---~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----------------------------- 318 (425)
T COG0823 271 ---GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----------------------------- 318 (425)
T ss_pred ---CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------------------
Confidence 2223344433333446679999999886654 444 55555554211
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-Ce--EEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEE
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 456 (491)
...++.+.. ...|.+||||++|+..+.. |. |.+.|+.++..+..+. +......-+|.|++..++
T Consensus 319 ----~riT~~~~~--------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ----TRLTFSGGG--------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ----eEeeccCCC--------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 111111111 1267899999999987753 44 7777776666443333 334445667788887665
Q ss_pred EEe
Q 011179 457 SSS 459 (491)
Q Consensus 457 s~~ 459 (491)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 544
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.7e-05 Score=66.77 Aligned_cols=83 Identities=16% Similarity=0.066 Sum_probs=65.0
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~ 194 (491)
.+.+..|...|..++|||..+ +|..++.+..|.|.|+++...+...... ..+.+++|.-|.. +|..|-..|.|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcceeEEeccCceEE
Confidence 346677888999999999887 7888999999999999987554443322 3799999998775 555566789999
Q ss_pred EEECCCCcc
Q 011179 195 IVDVGSGTM 203 (491)
Q Consensus 195 iw~~~~~~~ 203 (491)
|||+...+.
T Consensus 262 vyD~R~~~~ 270 (463)
T KOG1645|consen 262 VYDMRQPEG 270 (463)
T ss_pred EEEccCCCc
Confidence 999976543
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=8.9e-05 Score=72.45 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=125.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC-eeEEEEecCCCCEEEEEeCCC-----eEEEEecccccCCC-
Q 011179 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG- 306 (491)
Q Consensus 234 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~- 306 (491)
+|++.+..++.|+.+|.|.+++- .-+.+..+..+... |..+... ...++|++.+.|+ .+++||+...+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 56788889999999999888873 33344666666666 4444442 4446788777665 48999997443222
Q ss_pred -cee--eEecc-----ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 307 -KPA--GVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 307 -~~~--~~~~~-----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.++ ..+.. ...++.+++++.+-+.+|+|-.+|.|..+.=.-..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R----------------------------- 158 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR----------------------------- 158 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----------------------------
Confidence 222 12222 24578899999998999999999999887522111
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE-EEeeccCCCCeeeeEecCCCCeEEE
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVS 457 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s 457 (491)
+...+.--.|....++....+. .+++.++-...-..|.+|.+....+ ...+..|..+++|-++++....++.
T Consensus 159 ---Drgsr~~~~~~~~~pITgL~~~----~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 159 ---DRGSRQDYSHRGKEPITGLALR----SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred ---ccccceeeeccCCCCceeeEEe----cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 0111111112222233333322 2555533333345689999874332 4557788889999999987665665
Q ss_pred EeCCCcEEEEcCCCCCCC
Q 011179 458 SSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 458 ~~~Dg~v~iw~~~~~~~~ 475 (491)
++. ..|.+|+.+..+..
T Consensus 232 a~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 232 AGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred ecC-ceEEEEcCCCccee
Confidence 543 46999998765544
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=2.9e-07 Score=86.10 Aligned_cols=203 Identities=14% Similarity=0.183 Sum_probs=130.0
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEecCCCCEEEEEe----CCCeEEEEecc
Q 011179 229 GIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDRR 300 (491)
Q Consensus 229 ~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~ 300 (491)
.+.|+++.-+ ...+++|..+|.|-+-.++...-. ....+|..++++++|++-+.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4566666543 347889999999999988665432 234478889999999987888888874 36689999997
Q ss_pred cccCCCceeeEecc-ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 301 CLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
..-...+....+.+ ......+++|..+.+++++|.....++++|++......
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--------------------------- 190 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--------------------------- 190 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------------------------
Confidence 44212222222222 34556688999899999999999999999998421110
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccC-CCcEEEEEecCCeEEEEEC-CCC-cEEEeeccCC----CCeeeeEecCCC
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDL-VSG-EQVAALKYHT----SPVRDCSWHPSQ 452 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~-~~~-~~~~~~~~h~----~~v~~~~~sp~~ 452 (491)
..+.+ .. +-...++| .+.|+++-. ||.|.+||. ..- .++..+.... ..+..++|+|..
T Consensus 191 ---~svnT-------k~----vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 191 ---SSVNT-------KY----VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ---hhhhh-------hh----cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 00000 00 01112223 456777665 999999993 222 2222232222 248999999976
Q ss_pred C-eEEEEeC-CCcEEEEcCCCCC
Q 011179 453 P-MLVSSSW-DGDVVRWEFPGNG 473 (491)
Q Consensus 453 ~-~l~s~~~-Dg~v~iw~~~~~~ 473 (491)
. ++++... .++|+.+++..-.
T Consensus 256 tglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred cchhhhhccCcceEEEecccccC
Confidence 6 5666554 4789999987644
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.29 E-value=0.0011 Score=62.20 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=130.6
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc-ccc-------------------ccccccccc------ccc-cCC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LAN-------------------VTEIHDGLD------FSA-ADD 223 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~-------------------~~~~~~~~~------~~~-~~~ 223 (491)
.|+.+.|+++...|+++...|.|.||.+...+... ... +.+..+... |.+ .-.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999875443221 000 000000000 000 000
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--c------cCCCeeEEEEe----cCCC---CEEEEE
Q 011179 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--A------HTSDVNTVCFG----DESG---HLIYSG 288 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------h~~~v~~~~~~----~~~~---~~l~s~ 288 (491)
....++|++++.|.-| ++++|..+|.+.|.|++....+..-. . ....++++.|+ ..++ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1235789999998555 89999999999999998888776532 1 23467888886 1222 478899
Q ss_pred eCCCeEEEEecccccCCCcee----eEeccccCcEEEEE-EcCC-C-------------------CEEEEeeCCCcEEEE
Q 011179 289 SDDNLCKVWDRRCLNVKGKPA----GVLMGHLEGITFID-SRGD-G-------------------RYLISNGKDQAIKLW 343 (491)
Q Consensus 289 ~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~i~~~~-~~~~-~-------------------~~l~s~~~dg~i~iw 343 (491)
+..|.+.+|.+.-.. .+... .....+.++|..+. ++.+ | ..++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999874111 11111 11123445555554 3211 1 123333445567887
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc-cCCCcEEEEEecCCeE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-STGQKYIYTGSHDSCV 422 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i 422 (491)
...+.+. .-+.+ ........ +.+-+.. ...+..|++-..+|.|
T Consensus 241 ~~~~~k~---------------------------------~~K~~-~~~~~~~~--~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 241 KPPKSKG---------------------------------AHKSF-DDPFLCSS--ASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -TT---E---------------------------------EEEE--SS-EEEEE--EEEEEEE-EEEEEEEEEEETTSEE
T ss_pred eCCCCcc---------------------------------cceee-ccccccce--EEEEeecccCCceEEEEEECCCcE
Confidence 7765221 11222 11111111 1110000 1245678888899999
Q ss_pred EEEECCCCcEEEeeccCC----CCeeeeEecCCCCeEEEEeC
Q 011179 423 YVYDLVSGEQVAALKYHT----SPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~----~~v~~~~~sp~~~~l~s~~~ 460 (491)
++|.+..-+.+..++-.. ..+...+++++|..++-.+.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 999999999888776432 34667888999997766643
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.27 E-value=0.00068 Score=64.48 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=96.6
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.......+.++|+|++++++ .||...||....... .. .+.-...+|.+.++ +|+-...+.|.|+.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-KA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-EE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-cc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 34456789999999999885 688888988544321 11 12455688998555 6666668889996432222
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 282 (491)
.......+. .+..+-. |..|...+.+ .|.+||+.+++.+.++... +|..+.|+ +++
T Consensus 101 ~~k~i~~~~-----------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g 156 (443)
T PF04053_consen 101 VVKSIKLPF-----------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DDG 156 (443)
T ss_dssp TT-----SS------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TTS
T ss_pred cceEEcCCc-----------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CCC
Confidence 211111111 1222222 7766666554 8999999999999888533 38999998 788
Q ss_pred CEEEEEeCCCeEEEEecccc------c-CCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 011179 283 HLIYSGSDDNLCKVWDRRCL------N-VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i 342 (491)
++++..+.+ .+.+++.... + .-......+......|.+..|..+ .++-.... .|+.
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 898888765 6777765311 0 000133333333678888888766 44443333 5555
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00033 Score=65.57 Aligned_cols=207 Identities=12% Similarity=0.126 Sum_probs=108.6
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCC----------------ceeEEEEEECCCCCeEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL----------------RWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~sp~~~~l~~~ 187 (491)
...+....|||+|+.+|... ++.|.+++..++...+. ...+. -+.-..+.||||+++||..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 56788999999999999884 67899999888733322 22220 0122567899999999987
Q ss_pred ECCC-eE---EEEECCCCcc--cccccccccc----------------ccc--ccccc-CCCCceecEEEEEEcCCCCEE
Q 011179 188 SMSP-IV---HIVDVGSGTM--ESLANVTEIH----------------DGL--DFSAA-DDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 188 ~~d~-~i---~iw~~~~~~~--~~~~~~~~~~----------------~~~--~~~~~-~~~~h~~~i~~~~~s~~~~~l 242 (491)
..|. .| .+-+...... .......-.. .+. ..... ....-..-+..+.|.++++.|
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 5432 22 2222211100 0000000000 000 00000 000123368889999999844
Q ss_pred EEEe--CC---CeEEEEECCCCeeeEEEec-cCCC---eeEEEEe-cCCCCEEEEEeCCCeEEEEecccccCCCceeeEe
Q 011179 243 VAGS--SD---DCIYVYDLEANKLSLRILA-HTSD---VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 243 ~~~~--~d---g~i~vwd~~~~~~~~~~~~-h~~~---v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
++.- .+ ..+.++|..++.....+.. .... -....|. +.+..+|.....||.-.||-+.. .+.....+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~---~~~~~~~l 275 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL---DGGKPRQL 275 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET---TSSEEEES
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc---cccceecc
Confidence 4433 22 3477788877665433332 2222 2355554 56667777777888766665541 33445566
Q ss_pred ccccCcEEE-EEEcCCCCEEE-EeeC
Q 011179 313 MGHLEGITF-IDSRGDGRYLI-SNGK 336 (491)
Q Consensus 313 ~~~~~~i~~-~~~~~~~~~l~-s~~~ 336 (491)
....-.|+. +.++++++.|. ++..
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ccCceeecccceEcCCCCEEEEEecC
Confidence 655566755 66788877655 4443
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00026 Score=67.05 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=96.6
Q ss_pred eEEEEEECCCCCeEEEEE---CC-CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 171 TVTDTSLSPDQRHLVYAS---MS-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
.+..-+|+|+++.++... .. ..+.+++++++....+..... .-..-+|+|||+.|+...
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEEE
Confidence 677789999998877653 23 469999999888765554222 233468999999877654
Q ss_pred -CCC--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEE-EeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 247 -SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 247 -~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
.|| .|+++|+..+... .+....+.-..-.|+ |+|+.++. .+..|.-.||-... .+.....+......-..-
T Consensus 257 ~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~---~g~~~~riT~~~~~~~~p 331 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDL---EGSQVTRLTFSGGGNSNP 331 (425)
T ss_pred CCCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECC---CCCceeEeeccCCCCcCc
Confidence 444 4778888877743 354333333466787 66665554 44556555554331 233334444333333377
Q ss_pred EEcCCCCEEEEeeCC-Cc--EEEEeCCC
Q 011179 323 DSRGDGRYLISNGKD-QA--IKLWDIRK 347 (491)
Q Consensus 323 ~~~~~~~~l~s~~~d-g~--i~iwd~~~ 347 (491)
.|+|||++|+..+.. |. |.+.|+.+
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 799999999877643 43 55555544
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.22 E-value=0.0048 Score=58.73 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=103.4
Q ss_pred EEEEEcCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 128 YVSQFSADGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
+.++.+|.|-.+|....+ ..|.||+... ..+..+.... +.|.++.|+.+.. |++...||.++++
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEE
Confidence 345677777777766444 1599999764 4666544433 4799999998655 5566789999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe---c-----
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL---A----- 267 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~----- 267 (491)
|+.... ...+....... .-....+....+..+| ++.-..++.+++.+-.... ..+.+. .
T Consensus 107 ~~~G~~---~fsl~~~i~~~-------~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~ 174 (410)
T PF04841_consen 107 DLFGEF---QFSLGEEIEEE-------KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKF 174 (410)
T ss_pred eCCCce---eechhhhcccc-------CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccc
Confidence 986333 11111100000 0001123333444455 3333445555544322211 111111 0
Q ss_pred cC-CCeeE-EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 268 HT-SDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 268 h~-~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
+. ..... ..+. .+....+....++.+.+-+-. .... + ...+++..|++||+++++|.-..+|.+.+...
T Consensus 175 ~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 175 HWWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ccccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 00 01111 1232 334444444555566644432 1111 1 12468999999999999999999999888875
Q ss_pred CC
Q 011179 346 RK 347 (491)
Q Consensus 346 ~~ 347 (491)
.-
T Consensus 246 Df 247 (410)
T PF04841_consen 246 DF 247 (410)
T ss_pred cc
Confidence 43
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.17 E-value=5.9e-07 Score=84.13 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=128.3
Q ss_pred ceEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC-CCeEEEEE----CCCeEEEEEC
Q 011179 126 RAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS----MSPIVHIVDV 198 (491)
Q Consensus 126 ~i~~~~~s~dg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~----~d~~i~iw~~ 198 (491)
.+.|+++.-+. ..+++|..+|.|.+-.+...... ......++....++++|++- ...||.|- .|..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45666655443 47889999999999887654222 11233455557899999984 45666653 2567999999
Q ss_pred CCCcc--ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 199 GSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 199 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
.++-. .....+ ... ......+++|..+.+.+.+|.....+.++|++..... ...-.+..+..+.
T Consensus 137 ~s~ltvPke~~~f---------s~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~t 202 (783)
T KOG1008|consen 137 NSLLTVPKESPLF---------SSS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGIT 202 (783)
T ss_pred ccccCCCcccccc---------ccc----cccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccce
Confidence 87632 111111 110 1114558899989999999999989999998743221 1112334566777
Q ss_pred EecCCCCEEEEEeCCCeEEEEe-cccccCCCceeeEecccc----CcEEEEEEcCCCC-EEEEeeC-CCcEEEEeCCCC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHL----EGITFIDSRGDGR-YLISNGK-DQAIKLWDIRKM 348 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~-~l~s~~~-dg~i~iwd~~~~ 348 (491)
..|-.++++++-. ||.|.+|| .+. -..++..+.... ..+..++|.|... .+++... .++|+++|+...
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 7655778886655 99999999 331 122332222222 2488999998532 3444444 578999998763
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.16 E-value=0.0082 Score=57.81 Aligned_cols=203 Identities=19% Similarity=0.193 Sum_probs=109.5
Q ss_pred ceEEEEEcCCCCEEEEE-EcCC----eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC---------
Q 011179 126 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------- 191 (491)
.+...++||||++||.+ +..| .|+++|+.+|+.+....... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999999865 3333 59999999996665432221 122399999998888776433
Q ss_pred --eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC----ee
Q 011179 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---D-DCIYVYDLEAN----KL 261 (491)
Q Consensus 192 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---d-g~i~vwd~~~~----~~ 261 (491)
.|..|++.+.......-..... .......+..++|+++|+.... + ..+++.|+..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 3788888776543111111111 1112567889999998876443 2 45888898875 23
Q ss_pred eEEEeccCCCeeEEEEecCCCCEEEEEeC---CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CC
Q 011179 262 SLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD 337 (491)
Q Consensus 262 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d 337 (491)
...+......+....-. .++.+++.... .+.|.-.++..... ......+..+...+.-..+...+.+|+... .+
T Consensus 269 ~~~l~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~ 346 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN 346 (414)
T ss_dssp EEEEEESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEET
T ss_pred cEEEeCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEEC
Confidence 34444444444433322 23444443322 34566666652211 012225555655433333333444555443 34
Q ss_pred C--cEEEEeCC
Q 011179 338 Q--AIKLWDIR 346 (491)
Q Consensus 338 g--~i~iwd~~ 346 (491)
+ .|+++++.
T Consensus 347 ~~~~l~v~~~~ 357 (414)
T PF02897_consen 347 GSSRLRVYDLD 357 (414)
T ss_dssp TEEEEEEEETT
T ss_pred CccEEEEEECC
Confidence 3 48888887
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0084 Score=58.80 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEE---------CCCeEEEEECCCCcccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYAS---------MSPIVHIVDVGSGTMES 205 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~---------~d~~i~iw~~~~~~~~~ 205 (491)
..++.++.+|.|+-+|.++|+.+-+.......... ..+.-+| .+..++.++ .++.|..+|..+|+..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~-~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPG-YTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcc-eEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57888888999999999999776654332210000 0011111 123444443 36789999999998765
Q ss_pred ccccccccccccccccCCC----Cce-ecE-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCee
Q 011179 206 LANVTEIHDGLDFSAADDG----GYS-FGI-FSLKFSTDGRELVAGSSDD------------------CIYVYDLEANKL 261 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~----~h~-~~i-~~~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~ 261 (491)
........ ...+...... .+. ..+ ...++.+.+..+++++.++ .|.-+|+.+++.
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPD-PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCC-cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 54432110 0000000000 000 011 1245555566788887665 799999999998
Q ss_pred eEEEec--cCC----CeeEEEEe---cCCCC---EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC
Q 011179 262 SLRILA--HTS----DVNTVCFG---DESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 262 ~~~~~~--h~~----~v~~~~~~---~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
.-.+.. |.. ......+. +.++. .++.++.+|.+...|.+ +++.+...... ...+..+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence 766542 211 00111111 01232 67888899999999998 66666543311 11223333 2
Q ss_pred EEEEe------------------eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 330 YLISN------------------GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 330 ~l~s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.+..+ ..+|.+.-.|+.+++..-....... .....+...
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~-----------------------~~~~~~g~~ 396 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI-----------------------RDSWNIGFP 396 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc-----------------------ccccccCCc
Confidence 22222 1345666666666432221110000 000000000
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 438 (491)
. +.......+.+|++++.||.|+.+|..+|+.+.+++.
T Consensus 397 ~---------~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 H---------WGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred c---------cCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 0000011467899999999999999999999988764
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.00026 Score=68.40 Aligned_cols=148 Identities=13% Similarity=0.065 Sum_probs=93.9
Q ss_pred EEEcCCCCEEEE-EEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC------------------
Q 011179 130 SQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------------------ 190 (491)
Q Consensus 130 ~~~s~dg~~la~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------------ 190 (491)
+=++|||+.+.. .-..+.+.+.|.++.+...++.... ....++++|+++++++.+.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 346778876643 3345678888988775555554433 34567889999988877522
Q ss_pred ----------------------CeEEEEECCC-----CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 191 ----------------------PIVHIVDVGS-----GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 191 ----------------------~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
+.|.+.|..+ ........ -......+.++|||++++
T Consensus 274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-----------------VGKsPHGV~vSPDGkyly 336 (635)
T PRK02888 274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-----------------VPKNPHGVNTSPDGKYFI 336 (635)
T ss_pred EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-----------------CCCCccceEECCCCCEEE
Confidence 1233333222 01111000 111466789999999887
Q ss_pred EEeC-CCeEEEEECCCCee------------eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 244 AGSS-DDCIYVYDLEANKL------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 244 ~~~~-dg~i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
+++. +.+|.|.|+.+.+. +.+..- .......+|. .+++.+.+-..|..|..|++.
T Consensus 337 VanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD-g~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 337 ANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD-GRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC-CCCCEEEeEeecceeEEEehH
Confidence 7665 88999999987552 223322 2234566885 778888888899999999986
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.06 E-value=0.0024 Score=59.94 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=119.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEE----------------------------------------EEEeec
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA 165 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 165 (491)
.|..+.|+++..-|++|...|.|.||.....+.. ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999876433111 111112
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-----CC-
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~~- 239 (491)
+..+++|++++.| |=.+++.|..+|.+.|.|++....+....+.+... .......++++.|.- |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~--------~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL--------SKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T---------SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccccc--------ccccccCeeEEEEEEEecCCCcc
Confidence 2335689999987 56689999999999999998877665544433000 011223577777762 33
Q ss_pred --CEEEEEeCCCeEEEEECCC---CeeeE----EEeccCCCeeEEEEe-cCCC-------------------CEEEEEeC
Q 011179 240 --RELVAGSSDDCIYVYDLEA---NKLSL----RILAHTSDVNTVCFG-DESG-------------------HLIYSGSD 290 (491)
Q Consensus 240 --~~l~~~~~dg~i~vwd~~~---~~~~~----~~~~h~~~v~~~~~~-~~~~-------------------~~l~s~~~ 290 (491)
-.|++|+..|.+.+|.+.- +.... ....+.++|..+... ...+ +-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3789999999999998741 21111 112455666666532 1111 12334445
Q ss_pred CCeEEEEecccccCCCceeeEeccccCcEEEEEE-----cCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-----RGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
+..++++... ..+..............+.+ ...+..|++-..+|.|+++.+...+.
T Consensus 234 e~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 234 ESDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp SSEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred ccceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 6789999876 44443333322122223334 23566788889999999999987543
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=9.3e-05 Score=72.14 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=88.5
Q ss_pred EEEEEECCCCCeEEEEEC----CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 172 VTDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
-+-..|+|...++++++. .|.|.|| .++|++..-.. ....+++++|+|..-.|+.|-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence 345689999999998864 4778887 35555322111 2225778999999888999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
-|.+.+|...+.+.-.....|..+|..+.|+ ++|+.++++..-|.+.+|...
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 9999999998888766677899999999998 889999999999999999875
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0051 Score=53.53 Aligned_cols=203 Identities=13% Similarity=0.157 Sum_probs=110.9
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 229 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 229 ~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
.+..++|+|+.+ .+++....+.|..++. +++.++++.-. .+..-.|++. .++.++++.-.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 699999999755 5666777888988997 47777776533 4678999996 666666666568999999884221111
Q ss_pred --ceeeEe-----ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 307 --KPAGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 307 --~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.....+ ..+...+-.++|+|.++.|+++-...-..+|.+........
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 111111 13456689999999888888777776677776654110000
Q ss_pred CCCceEEEEeCC----ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC---------CCeeee
Q 011179 380 PCDQSVATYKGH----SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDC 446 (491)
Q Consensus 380 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~ 446 (491)
-.+...... ..........+.+. .+.+++.......|.++| .+|+.+..+.-.. ...-.+
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~---t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPR---TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETT---TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ---eeeccccccccccceeccccceEEcCC---CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 000000000 01111223334443 567777788888999999 5787766553211 246789
Q ss_pred EecCCCCeEEEEeCCCcEEEE
Q 011179 447 SWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 447 ~~sp~~~~l~s~~~Dg~v~iw 467 (491)
+|.++|++.+++ .-+..+++
T Consensus 228 a~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEEE-TTTEEEEE
T ss_pred EECCCCCEEEEc-CCceEEEe
Confidence 999999755544 55555544
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.03 E-value=0.0027 Score=57.34 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=90.3
Q ss_pred CCCCeEEEEECCCeEEEEECC-CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011179 179 PDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 257 (491)
..++.|+.|+.+| +.+++.. ........ +...|..+...++-+.|++-+ |+.++++++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence 3578899999888 8888882 22222211 112588899999877766654 5999999987
Q ss_pred CCeeeEE--------------EeccCCCeeEEE-EecCCCCEEEEEeCCCeEEEEecccccCCC-ceeeEeccccCcEEE
Q 011179 258 ANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITF 321 (491)
Q Consensus 258 ~~~~~~~--------------~~~h~~~v~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~ 321 (491)
.-..... .......+...+ -....+...++......|.+|......... ...+.+. -.+.+..
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS 143 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence 6544331 112233445554 112334444444555699998886322222 3444444 3477889
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
++|. ++.++.+..+ ...+.|+.+...
T Consensus 144 i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 144 IAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 9998 4467777655 478888886543
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0002 Score=68.53 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=104.6
Q ss_pred CceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
+...|.--+++..+++++.|+.-|.+.+|+-..+.......- +-.+.+.....+++..++|+|+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcC
Confidence 334577777888899999999999999999887765443321 12225667778888888999999
Q ss_pred CCeEEEEECCCCeeeE-----EE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEE
Q 011179 248 DDCIYVYDLEANKLSL-----RI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~-----~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
.|.|.++-+....+.. .. ..|...|++++|+ +++..+++|...|+|..-.+.....-....+.+....+.|..
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 9999999887643211 11 1478899999997 899999999999999988876311112233344445567777
Q ss_pred EEEcCCCCEEEEe
Q 011179 322 IDSRGDGRYLISN 334 (491)
Q Consensus 322 ~~~~~~~~~l~s~ 334 (491)
+... ++.+|++.
T Consensus 176 lD~~-q~~LLVSt 187 (726)
T KOG3621|consen 176 LDYL-QSYLLVST 187 (726)
T ss_pred eecc-cceehHhh
Confidence 7765 34444433
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.0025 Score=60.69 Aligned_cols=141 Identities=18% Similarity=0.133 Sum_probs=80.0
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.+..+.++|+|++++++ .+|...|+.....+.. ..+....+.|.+.++ +|+-...+.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k---------------------~~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK---------------------AFGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE---------------------EEEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc---------------------ccCceeEEEEecCcc-EEEEECCCe
Confidence 47789999999999885 4788888873322211 112455688998555 677777888
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
|.|+.--+.+....+.. ...+..+-. |.+|+..+.+ .|.+||.. .++.+..+.. .+|..+.|+++|.+
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~----~~~~i~~i~v--~~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWE----TGKLIRRIDV--SAVKYVIWSDDGEL 158 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TT----T--EEEEESS---E-EEEEE-TTSSE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhh----HcceeeEEec--CCCcEEEEECCCCE
Confidence 99963323222223321 112333322 6777776655 89999998 7788877763 34899999999999
Q ss_pred EEEeeCCCcEEEEeCCC
Q 011179 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (491)
++..+.+ .+.+++...
T Consensus 159 val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-S--SEEEEEE-H
T ss_pred EEEEeCC-eEEEEEecc
Confidence 9988766 577776543
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.019 Score=54.37 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=154.2
Q ss_pred EEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCCccccccccccccccccccccCCCCc
Q 011179 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
+.+++..+........... ....+...|++..+..... ...+...+..............
T Consensus 13 ~~v~~~~~~~~~~~~~~~~----~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~--------------- 73 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR----GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG--------------- 73 (381)
T ss_pred eEEEeecccEEEEEeecCC----CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---------------
Confidence 5566655543333322222 3556778888855544432 2244444443211111110000
Q ss_pred eecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC---CCeEEEEecccc
Q 011179 227 SFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCL 302 (491)
Q Consensus 227 ~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~ 302 (491)
.....++.++.+..+.+ ...++.|.+.|..+.+.......-. ....+++. ++++.++.+.. ++++.+.|..
T Consensus 74 -~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~-- 148 (381)
T COG3391 74 -VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAA-- 148 (381)
T ss_pred -ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeCC--
Confidence 13456788888875444 4456889999988777766554322 66788997 56655555544 6888888876
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
..+.......-..+ ..++++|+|..++... .++.|.+.|.......
T Consensus 149 --t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------------------------------ 195 (381)
T COG3391 149 --TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------------------------------ 195 (381)
T ss_pred --CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------------------------------
Confidence 45555543332334 7899999999665554 7888999997653211
Q ss_pred CceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCcEEEeeccCCC-CeeeeEecCCCCeEEE
Q 011179 382 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVS 457 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s 457 (491)
. .............+...++|+|.++++.... +.+...|..++.....-..-.. ....+..+|+|..+.+
T Consensus 196 -----~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv 269 (381)
T COG3391 196 -----R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYV 269 (381)
T ss_pred -----c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEE
Confidence 0 0000001111111223567788877766554 5899999988887665221111 5677899999998877
Q ss_pred EeC-CCcEEEEcCCCCC
Q 011179 458 SSW-DGDVVRWEFPGNG 473 (491)
Q Consensus 458 ~~~-Dg~v~iw~~~~~~ 473 (491)
... .+.+.+-|.....
T Consensus 270 ~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 270 ANSQGGTVSVIDGATDR 286 (381)
T ss_pred EecCCCeEEEEeCCCCc
Confidence 744 4778888776644
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.026 Score=55.67 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCc-eeEEE-------EEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTD-------TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~-------~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
+..|++++.++.|+-.|..+|+.+-+........ ..+.+ +++ .+..++.++.++.|.-.|..+|+..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889889999986665543221100 01001 122 2346777888999999999999876554
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccC------------
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT------------ 269 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~------------ 269 (491)
......... .+.+--.--++ .++++.. +|.|.-+|.++++.+-++..-.
T Consensus 147 ~~~~~~~~~------------~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 147 KNGDYKAGY------------TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred ccccccccc------------cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence 432111000 11110000134 4555432 6889999999998765443110
Q ss_pred -------------------CCee-EEEEecCCCCEEEEEeCC-----C-----------eEEEEecccccCCCceeeEec
Q 011179 270 -------------------SDVN-TVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 270 -------------------~~v~-~~~~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~ 313 (491)
..+. .+++ ++...+++.+... + .|.--|++ +++..-.++
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q 288 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQ 288 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeee
Confidence 0111 2344 3455566665522 1 34444554 455544443
Q ss_pred cccCcE---------EEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCc
Q 011179 314 GHLEGI---------TFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 314 ~~~~~i---------~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
.....+ .-+.+..+|+ .++.+..+|.+.+.|-++++..
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 321111 1223334665 7788999999999999987653
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.92 E-value=0.013 Score=54.26 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCC-ceeEEEEEECCC----CCeEEEEEC----------CCeEEEEECCCC-----cccc
Q 011179 146 SQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPD----QRHLVYASM----------SPIVHIVDVGSG-----TMES 205 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~sp~----~~~l~~~~~----------d~~i~iw~~~~~-----~~~~ 205 (491)
+.|++.|..+.+.+......... -..+..+.+..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888777666555444332 112334444433 467777653 288999999874 2111
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe-ccCCCeeEEEEecCCCC
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH 283 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~-~h~~~v~~~~~~~~~~~ 283 (491)
.... ...++|++++-- ++ +|+++. .+.|.+|++...+ ....-. .....+.++... ++
T Consensus 82 i~~~---------------~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~ 140 (321)
T PF03178_consen 82 IHST---------------EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN 140 (321)
T ss_dssp EEEE---------------EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred EEEE---------------eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence 1111 123378888776 44 455544 4789999998887 433322 233466677664 56
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEecc--ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+++.|.....+.++..+. ....+..+.. ....++++.+-++++.++.+..+|.+.++....
T Consensus 141 ~I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 999999888888875542 1222222222 245588888886667999999999999998863
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.90 E-value=0.0069 Score=55.98 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=117.9
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC----CCEEEEEeC----------CCeEEEEEC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGSS----------DDCIYVYDL 256 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----~~~l~~~~~----------dg~i~vwd~ 256 (491)
..|++.|..+.+......+.... +...+..+.+..+ ..+|++|+. .|.|.++++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E------------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i 69 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE------------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEI 69 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE------------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCc------------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEE
Confidence 35778887776655444433211 1123444455443 467887763 289999999
Q ss_pred CCC----eeeEEE--eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe--ccccCcEEEEEEcCCC
Q 011179 257 EAN----KLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDG 328 (491)
Q Consensus 257 ~~~----~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 328 (491)
... ..+..+ ....++|++++-. ++. |+++. .+.|.+|++. ....+... ......++++... +
T Consensus 70 ~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 70 SESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp CSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--c
Confidence 884 122211 2457899999875 444 44433 4799999997 33312222 2223366666665 5
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC
Q 011179 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
+++++|.....+.++..+.. ...+..+........+..+.+- +
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~~~v~~~~~l----~ 182 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQPRWVTAAEFL----V 182 (321)
T ss_dssp TEEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-BEEEEEEEE-----
T ss_pred cEEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCCccEEEEEEe----c
Confidence 59999998888888755431 1222222222212223333222 2
Q ss_pred CCcEEEEEecCCeEEEEECCC-------Cc--E--EEeeccCCCCeeee---EecCC--CC------eEEEEeCCCcEEE
Q 011179 409 GQKYIYTGSHDSCVYVYDLVS-------GE--Q--VAALKYHTSPVRDC---SWHPS--QP------MLVSSSWDGDVVR 466 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~~---~~sp~--~~------~l~s~~~Dg~v~i 466 (491)
+++.++++..+|.+.++.... +. . +..+. ....|+++ ++.|. +. .++-++.+|.|.+
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 446899999999999998763 22 2 22332 34567777 55552 22 4888889999874
Q ss_pred E
Q 011179 467 W 467 (491)
Q Consensus 467 w 467 (491)
.
T Consensus 262 l 262 (321)
T PF03178_consen 262 L 262 (321)
T ss_dssp E
T ss_pred E
Confidence 3
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.023 Score=53.69 Aligned_cols=264 Identities=17% Similarity=0.154 Sum_probs=155.8
Q ss_pred ceEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE-EEEECCCeEEEEECCCCcc
Q 011179 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~ 203 (491)
....+...|+|..+.... ....+.+.+.... ....... .+. .....++.++.+..+ +....++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~-~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLS-VGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeecc-CCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 445677888885544433 2224555554422 2211111 110 245577888888744 4445568999999766655
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEecC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 280 (491)
........ ....++++++++.+.++.. ++.+.+.|..+++.......-..+ ..+++. +
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 44333221 4557899999988877765 688999999999988875544344 888996 6
Q ss_pred CCCEEEEE-eCCCeEEEEecccccCC-CceeeEeccccCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCccccc
Q 011179 281 SGHLIYSG-SDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 281 ~~~~l~s~-~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~ 355 (491)
+++.++.. ..++.|.+.|....... ........ -...-..+.++|+|..+.+.... +.+...|..+.......
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~- 247 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD- 247 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec-
Confidence 77755544 47899999997522111 00000111 12233568899999976655443 47888887763211100
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCcEEE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~ 434 (491)
..... . .......+|+|+++.+... .+.+.+.|..+.....
T Consensus 248 --------------------------------~~~~~-----~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 248 --------------------------------LPVGS-----G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred --------------------------------ccccc-----C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 00000 0 1122356778999888855 4889999998887776
Q ss_pred eeccCC---CCeeeeEecCC
Q 011179 435 ALKYHT---SPVRDCSWHPS 451 (491)
Q Consensus 435 ~~~~h~---~~v~~~~~sp~ 451 (491)
.+.... ..+..+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 290 TGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eecccccccccceeccceee
Confidence 654332 23555555554
No 358
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.86 E-value=0.02 Score=53.67 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=29.3
Q ss_pred cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 314 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.....+.++..+|++++.++...-|.|.++|+.+.
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 34455788999999999888877899999999884
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.82 E-value=6.1e-05 Score=44.14 Aligned_cols=39 Identities=38% Similarity=0.655 Sum_probs=34.4
Q ss_pred CcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
++++..+..|...|.+++|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.82 E-value=0.0028 Score=62.84 Aligned_cols=194 Identities=12% Similarity=0.093 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCEEEEEE------cCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-CeEEE
Q 011179 125 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI 195 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~i 195 (491)
..+...++||||+.+|..- .|+ .|.+++.... ...+ . .+. ....-.|+|||+.|++.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l-t-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV-L-EGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee-e-cCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4678999999999887654 233 4555564322 2222 2 222 37788999999988887543 22333
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCee-e---EEEec-
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKL-S---LRILA- 267 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~v---wd~~~~~~-~---~~~~~- 267 (491)
.+...........+.. + .... .....|..+.|||||..++... +|.|++ -....+.. + ..+..
T Consensus 424 ~~~~~~gql~~~~vd~---g-e~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 424 IRDPATGQLARTPVDA---S-AVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eccCCCceEEEEeccC---c-hhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 3221111111000000 0 0000 1123699999999999988876 577877 44444541 1 11222
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc--ccCcEEEEEEcCCCCEEEEeeCCCcE
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i 340 (491)
-...+..+.|. .++.+ +.+..++...+|.+.. .+.....+.. ...++..++-+++ .++....++.+
T Consensus 495 l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 495 LGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cCCccccceEe-cCCEE-EEEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 22346889997 66664 4656666556666542 2222212222 3567777877763 45555566533
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.0076 Score=52.25 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=119.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+....+.++.|+|+.+.|++......-.|+=...|+.+..+....-+ ....+.+..++++.++--.++.+.++.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEE
Confidence 345566667999999999999988877777777766777777765544333 356688888888888877888999988
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE---Eecc------
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH------ 268 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h------ 268 (491)
+..+.......... ++.....+.......++|.|..+.|.++-+..-+.||.+........ ...+
T Consensus 157 vd~~t~~~~~~~~~------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQK------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceE------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 87664322222111 11111111134678899999999899888877777776654331111 1111
Q ss_pred -CCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 269 -TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 269 -~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
-..|..+.|.+..+++++-+.+++.+.-.|..
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 24578888988888899999999998888874
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.78 E-value=0.024 Score=57.47 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=92.8
Q ss_pred CeEEEE-ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 011179 182 RHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 182 ~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~~~~l~~~~~dg~i~vwd 255 (491)
++|+.. .....|+-.|++.|+.+....+.... +|..++-.. +....+.|-.+..+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCc---------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence 444433 34578899999999887666554311 233333221 123456777788899999
Q ss_pred CCCCe--eeEE-Ee--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 256 LEANK--LSLR-IL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 256 ~~~~~--~~~~-~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
.+-.. ++.. .. .......|++-. ...+||.|+.+|.||+||.- .......+.+-..+|..|+.+.||++
T Consensus 559 pR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred cCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCcE
Confidence 87532 2211 11 234456777764 45589999999999999953 22333445566799999999999999
Q ss_pred EEEeeCCCcEEEEeCC
Q 011179 331 LISNGKDQAIKLWDIR 346 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~ 346 (491)
|++.+. ..|.|++..
T Consensus 633 ilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 633 ILATCK-TYLLLIDTL 647 (794)
T ss_pred EEEeec-ceEEEEEEe
Confidence 887654 467777754
No 363
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.71 E-value=0.034 Score=51.45 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEE----eeccCCCCeeeeEecCCCCeEEEEeCCCcEE
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVA----ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~ 465 (491)
.|.++++.-..+.|....+..+..+. .+......+.++++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 67788877777888888887553322 1233455899999999999888888899875
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=6.1e-05 Score=62.20 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEeeccCC-CCeeeeEecCCCCeEEEE--eCCCcEEEEcCCCCCCCCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~s~--~~Dg~v~iw~~~~~~~~~~ 477 (491)
++.+..+++.||.|+.|++.-++.+.....|. .++..+..+..++.|+.+ |.|..++.|++.......+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~ 184 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESP 184 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccCc
Confidence 45688999999999999999999888888787 778888888888888888 8899999999987655544
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0044 Score=53.20 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=110.8
Q ss_pred EEcCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC----------------
Q 011179 131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (491)
Q Consensus 131 ~~s~dg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------- 189 (491)
.|||||.+|...-. -|.|-|||...+ .++.-....|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 69999999887543 378999999864 5555555566556788999999999987642
Q ss_pred --CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeee
Q 011179 190 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 262 (491)
Q Consensus 190 --d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~ 262 (491)
...+.+.|..+|+.+....++.. .+.-.|..++..+||+.++.+-..|. -.|=-...++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~------------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS------------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh------------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 12344555555555444333321 12336888888888875544432221 111111222222
Q ss_pred EEEe-------ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 263 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 263 ~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
.-+. .....|-+|+.+..++-..+++=..+...+||.. ++..+..-. -.....++ +...-+++.+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~--l~daaGva--~~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAA--LPDAAGVA--AAKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEeccc--ccccccce--eccCceEEec
Confidence 2221 2345678888874444444455455677899987 554443221 11122222 2334467777
Q ss_pred CCCcEEEEe
Q 011179 336 KDQAIKLWD 344 (491)
Q Consensus 336 ~dg~i~iwd 344 (491)
.+|.+.++.
T Consensus 338 g~G~~~~~s 346 (366)
T COG3490 338 GQGRIIFYS 346 (366)
T ss_pred CCceEEecc
Confidence 788888874
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.58 E-value=0.014 Score=43.04 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=50.2
Q ss_pred eeEEEEecCC---CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 272 VNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 272 v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
|+++++.+-+ .+.|++|+.|..||+|+ ....+..+. ..+.|+++.-... ..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK------GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe------CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 6677776433 36899999999999998 445666665 3567778876655 568889999999998753
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.58 E-value=0.12 Score=52.59 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+|++||.- ...|++|+..+.+.+..-..|..++..+...-.|..++.|..-+.+.+-.+...+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 67777654 4679999998887777666788899999999999999999988888877766554
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.059 Score=51.43 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=39.0
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC-CCCeeeeEecCCCCeEE
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~ 456 (491)
+++||++++||.-..+|.+.+....-.+.+..+... ......+.|+-+...++
T Consensus 222 iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred EEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 367779999999999999999987666666666533 45667888876654333
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.57 E-value=0.013 Score=43.05 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=67.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 230 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 230 i~~~~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
|+++++.. || +.|++|+.|..|++|+-+ +.+..+. -...|++++-. ....|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~------ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSL--GGGRFAYALANGTVGVYDR------ 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEc--CCCEEEEEecCCEEEEEeC------
Confidence 45555554 33 589999999999999744 4555553 45677888775 3478999999999999984
Q ss_pred CceeeEeccccCcEEEEEE-cCCC---CEEEEeeCCCcEE
Q 011179 306 GKPAGVLMGHLEGITFIDS-RGDG---RYLISNGKDQAIK 341 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~-~~~~---~~l~s~~~dg~i~ 341 (491)
...+...+.... ++++.+ ..++ ..|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 334444443333 555554 3332 3688888888764
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.55 E-value=0.091 Score=50.62 Aligned_cols=248 Identities=16% Similarity=0.198 Sum_probs=124.4
Q ss_pred eEEEEEECCCCCeEEEEE-CCC----eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 171 TVTDTSLSPDQRHLVYAS-MSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+....++|+++++|.+- ..| .|+++|+.+++..... +.. .....+.|.++++.|+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~----------------~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN----------------PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE----------------EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc----------------cccceEEEeCCCCEEEEE
Confidence 455789999999998763 333 6999999998653211 110 012239999998877665
Q ss_pred eCC-----------CeEEEEECCCCeee--EEEeccCCC--eeEEEEecCCCCEEEEEeC-C---CeEEEEecccccCCC
Q 011179 246 SSD-----------DCIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSD-D---NLCKVWDRRCLNVKG 306 (491)
Q Consensus 246 ~~d-----------g~i~vwd~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~~~ 306 (491)
..+ ..|+.|.+.+.... ..+...... ...+..+ .++++|+.... . ..+.+.|+.......
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 432 34888888876532 334333333 4567776 77777665433 2 346666765210011
Q ss_pred ceeeEeccccCcEE-EEEEcCCCCEEEEee---CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCC
Q 011179 307 KPAGVLMGHLEGIT-FIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (491)
Q Consensus 307 ~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
.....+......+. .+... ++.+++... ..+.|...++......
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------------------------------- 314 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------------------------------- 314 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-------------------------------
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc-------------------------------
Confidence 23333333444443 34333 343443332 2355666666653210
Q ss_pred ceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC--eEEEEECCCCcEEEeec-cCCCCeeeeEecCCCCe-EEE-
Q 011179 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPM-LVS- 457 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~-l~s- 457 (491)
.....+-.+.....+..+.. . .+.+++....++ .|+++++..+.....+. .-.+.|..+...+++.. .++
T Consensus 315 ~~~~~l~~~~~~~~l~~~~~--~---~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 315 EWWTVLIPEDEDVSLEDVSL--F---KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp GEEEEEE--SSSEEEEEEEE--E---TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred cceeEEcCCCCceeEEEEEE--E---CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 00111111111111111111 1 344555555555 68899998344443333 23445667766666663 232
Q ss_pred EeC--CCcEEEEcCCCCC
Q 011179 458 SSW--DGDVVRWEFPGNG 473 (491)
Q Consensus 458 ~~~--Dg~v~iw~~~~~~ 473 (491)
.+. -++++.||+..++
T Consensus 390 ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 390 SSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETTEEEEEEEEETTTTC
T ss_pred eCCCCCCEEEEEECCCCC
Confidence 332 2567788877654
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.53 E-value=0.072 Score=49.01 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=116.6
Q ss_pred ECCCCeEEEEEeecCCCce--eEEEEEECCCCCeEEEEEC-C--CeEEEEECCCCccccccccccccccccccccCCCCc
Q 011179 152 DVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 152 d~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
|..+|.++.++.....+.. ..+.=+|.+||+.|+.++. + ..+.+.|+.+++..++......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-------------- 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-------------- 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--------------
Confidence 5667766655544333211 1222367889987777665 3 4788889999988766553321
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-cCCCCEEEEEeC---------------
Q 011179 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSGSD--------------- 290 (491)
Q Consensus 227 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~--------------- 290 (491)
......++++.+.++-......|+-.|+.+.+....+......+-...|. ..++..++-.-.
T Consensus 82 --~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 82 --NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp ---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred --CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 11134667888887766666789999999988766665556665556664 344555433211
Q ss_pred -------CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCcccccCCC
Q 011179 291 -------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 291 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~ 358 (491)
...|..-|+. .++ ...+......+..+.|+|....+++-+..| .-+||-+++..
T Consensus 160 e~~~a~p~~~i~~idl~----tG~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------- 225 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLK----TGE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------- 225 (386)
T ss_dssp HHHHC---EEEEEEETT----T---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------
T ss_pred HHHhhCCCceEEEEECC----CCc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------
Confidence 1122223333 222 333334556778899999766555544332 23677666522
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-----CCeEEEEECCCCcEE
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVSGEQV 433 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~ 433 (491)
.....+..+... ..+-...|+|||..|.--+. +..|.-+|+.+++..
T Consensus 226 ------------------------~~~~~v~~~~~~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 226 ------------------------SNVKKVHRRMEG----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp ---------------------------EESS---TT----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred ------------------------CcceeeecCCCC----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 111111111111 11122246678887765322 446788888888654
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
.... ......+.-++||++++-=+.|
T Consensus 278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 3322 2245567778899877654444
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.50 E-value=0.15 Score=51.91 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=113.2
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC--------------CeEEEEECCCCccc
Q 011179 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIVDVGSGTME 204 (491)
Q Consensus 139 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------~~i~iw~~~~~~~~ 204 (491)
|+.+ ..+.+++.-++.-.++..... ........+++.+....+.+.+.. ..++++|-++-+..
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4444 344566666654322221111 112246677777755444443321 13566665555544
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeC----------CCeEEEEECCCCeeeEEEec--cCCC
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS----------DDCIYVYDLEANKLSLRILA--HTSD 271 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~--h~~~ 271 (491)
.......... .-.|.++.|..| +.++++|.. .|.|.|+.+...+.+..... -.+.
T Consensus 764 ~~hef~~~E~------------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 764 SSHEFERNET------------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred eeccccccce------------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 4333322211 125666778887 778888862 57888888877444333332 2455
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
+.++.. -+++++|. -...|++|+.. ..+.++.-..+..++..+...-.|..+++|.--+.+.+...+..
T Consensus 832 v~aL~~--fngkllA~--In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLAG--INQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eeehhh--hCCeEEEe--cCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 666554 35666654 45689999997 55667777778889999999889999999998888877766553
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00076 Score=63.97 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=65.2
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEE-EEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
......|.-+.|+|.-.++|++..+|.|.+..++-. ++.. ..-+...++ +++|.|||+.||+|-.||+|++.|++
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEeccc-eeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 344567899999999999999999999999988732 3332 222333455 99999999999999999999999999
Q ss_pred CCccccc
Q 011179 200 SGTMESL 206 (491)
Q Consensus 200 ~~~~~~~ 206 (491)
++.....
T Consensus 93 ~~~~l~~ 99 (665)
T KOG4640|consen 93 KGGRLVS 99 (665)
T ss_pred CCCceec
Confidence 8876544
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.47 E-value=0.02 Score=56.94 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=106.5
Q ss_pred cCCCCEEEEEEcCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-C-----eEEEEECCC
Q 011179 133 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS 200 (491)
Q Consensus 133 s~dg~~la~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-----~i~iw~~~~ 200 (491)
+..+.+++.||.++ .+..||..++..... ..... ...-.+++.. ++...++|+.+ | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 44567778888763 688899888722221 11111 1123334443 45778888888 3 688888888
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeeeEEEeccCCCeeEE
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
++......+..... ...+.. -+|...|+|+.||. |-.||..+.+....-. ........
T Consensus 359 ~~W~~~a~M~~~R~------------~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRS------------DFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGH 421 (571)
T ss_pred CceeccCCccCccc------------cceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeee
Confidence 87665544433211 112222 26888899998864 7778887776533221 11123333
Q ss_pred EEecCCCCEEEEEeCCC------eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCc-----EEEEe
Q 011179 276 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD 344 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-----i~iwd 344 (491)
....-++.+.++|+.++ ++..||..+. ....+..+........ ++.- ++.+.+.|+.|+. |..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEc
Confidence 33334688888888665 4567776522 2222323322222222 2222 5677888887762 56677
Q ss_pred CCC
Q 011179 345 IRK 347 (491)
Q Consensus 345 ~~~ 347 (491)
..+
T Consensus 498 p~~ 500 (571)
T KOG4441|consen 498 PET 500 (571)
T ss_pred CCC
Confidence 665
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.43 E-value=0.085 Score=47.48 Aligned_cols=280 Identities=12% Similarity=0.124 Sum_probs=122.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec--CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
...+..+.|..+..-+|+| ..+.| +-..+.|+........ ........++.|..+ ..+++ +..+ +.+...+.|
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecCCC
Confidence 4588999999656656665 45543 2233334333222211 111234677888643 33444 4445 334444444
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
+.-....+..... + ....+....++. ....+..|.|+.=.=...........-.+.+..+..+ ++
T Consensus 91 ~tW~~v~l~~~lp----------g---s~~~i~~l~~~~-~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~-~d 155 (302)
T PF14870_consen 91 KTWERVPLSSKLP----------G---SPFGITALGDGS-AELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS-SD 155 (302)
T ss_dssp SS-EE----TT-S----------S----EEEEEEEETTE-EEEEETT--EEEESSTTSSEEEEE-S----EEEEEE--TT
T ss_pred CCcEEeecCCCCC----------C---CeeEEEEcCCCc-EEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC-CC
Confidence 4322221111100 0 223333333443 3334455655433222222333334455778888886 88
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
++++++++......-||.- ...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+...
T Consensus 156 G~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~-------------- 216 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD-------------- 216 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--------------
T ss_pred CcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--------------
Confidence 9999888777777788853 211222222345789999999998776654 888888776221
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE-EecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec---
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--- 437 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 437 (491)
....+..+......... ...++|.+++...++|+. |.+ +.....|+.-...+
T Consensus 217 ----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 217 ----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp ----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT
T ss_pred ----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECcccc
Confidence 11222221110000011 233455557776666554 433 34445565433332
Q ss_pred cCCCCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
.-...+..+.|.++.+-++ .+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 2345688888876655555 4578887665
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.42 E-value=0.00049 Score=40.03 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=33.2
Q ss_pred ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 011179 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 344 (491)
.+...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556677888999999999999999999999999996
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.38 E-value=0.035 Score=55.28 Aligned_cols=228 Identities=18% Similarity=0.195 Sum_probs=122.0
Q ss_pred CCCeEEEEECC------CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 011179 180 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (491)
Q Consensus 180 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----- 248 (491)
.+..++.|+.+ ..+..+|..++........+... .-.+++.. ++...++|+.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r---------------~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR---------------CRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc---------------ccccEEEE-CCEEEEEccccCCCcc
Confidence 34555666665 36778888887665554443211 22233433 45778888888
Q ss_pred -CeEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCe-----EEEEecccccCCCceeeEeccccCcEE
Q 011179 249 -DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 249 -g~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
.++..||..+++....-. ..... ..++. -++.+.++|+.||. +..||.... ....+..+.......-
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSD-FGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceeccCCccCcccc-ceeEE--ECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeE
Confidence 358889988877543111 11111 22222 46888999999874 667776522 2223332222222222
Q ss_pred EEEEcCCCCEEEEeeCCC------cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee
Q 011179 321 FIDSRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
...+ +|.+.++|+.++ .+..||..+..-.. +.......
T Consensus 423 v~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~--------------------------------~~~M~~~R-- 466 (571)
T KOG4441|consen 423 VAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTL--------------------------------IAPMNTRR-- 466 (571)
T ss_pred EEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceee--------------------------------cCCccccc--
Confidence 2222 677888888654 45666665532110 00000000
Q ss_pred EeeEEEEecccccCCCcEEEEEecCC-----eEEEEECCCCcEEE--eeccCCCCeeeeEecCCCCeEEEEeCCCc----
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDS-----CVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGD---- 463 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~---- 463 (491)
....+ ..-++.+.+.|+.|+ +|..||..+.+... ........+..+.+ ++...+.|+.||.
T Consensus 467 -~~~g~-----a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 467 -SGFGV-----AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred -ccceE-----EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccc
Confidence 00000 111678888888776 37888887765432 23333333333444 6778888888875
Q ss_pred -EEEEcCCCC
Q 011179 464 -VVRWEFPGN 472 (491)
Q Consensus 464 -v~iw~~~~~ 472 (491)
|..||...+
T Consensus 539 ~ve~ydp~~d 548 (571)
T KOG4441|consen 539 TVECYDPETD 548 (571)
T ss_pred eeEEcCCCCC
Confidence 666765544
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.37 E-value=0.18 Score=49.86 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=88.4
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCc-eeEEEEEECCCCCeEEEEE------CCCeEEEEECCCCcccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~ 209 (491)
..++.++.|+.|.-.|..+|+.+-+........ ..+.+--.--++ .++++. .+|.|.-+|.++|+..-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 467778889999999999997765543221110 011110000134 444443 268999999999987654433
Q ss_pred cccccc----------ccc----cccCCCCc-eecE-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEECC
Q 011179 210 TEIHDG----------LDF----SAADDGGY-SFGI-FSLKFSTDGRELVAGSSD-----D-----------CIYVYDLE 257 (491)
Q Consensus 210 ~~~~~~----------~~~----~~~~~~~h-~~~i-~~~~~s~~~~~l~~~~~d-----g-----------~i~vwd~~ 257 (491)
...... ... -......+ ...+ ..+++.+...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 211100 000 00000000 0111 234667766666666522 2 67788999
Q ss_pred CCeeeEEEeccCCCe---------eEEEEecCCCC---EEEEEeCCCeEEEEecc
Q 011179 258 ANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 258 ~~~~~~~~~~h~~~v---------~~~~~~~~~~~---~l~s~~~dg~i~iwd~~ 300 (491)
+++..-.++.....+ .-+.. +.+++ .++.+..+|.+.+.|.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECC
Confidence 998876665322211 12222 23554 78899999999999987
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.011 Score=55.39 Aligned_cols=144 Identities=15% Similarity=0.234 Sum_probs=92.7
Q ss_pred CCCeEEE-EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 011179 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (491)
Q Consensus 180 ~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-------~l~~~~~dg~i 251 (491)
+.++|+. +.....++-.|++.|+.+....+.. .|.-+.+.|+.+ .-++|-.+..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 3444443 4445568888888888766655443 245556666543 12456678889
Q ss_pred EEEECCCCee--eEEEecc----CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 252 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 252 ~vwd~~~~~~--~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
.-||.+-... +....+| .....|.+- ....+|++||.+|.||+||.- .......+.+-..+|..|..+
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence 9999863322 2122222 234455554 355689999999999999973 333444567778899999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC
Q 011179 326 GDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+|++|+..+ +..+.+.++.-
T Consensus 481 adGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 481 ADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccCcEEEEec-ccEEEEEEEec
Confidence 9999887665 44666666543
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.12 Score=46.91 Aligned_cols=226 Identities=12% Similarity=0.150 Sum_probs=121.6
Q ss_pred EEECCCCCeEEEE-ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEE
Q 011179 175 TSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (491)
Q Consensus 175 ~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~v 253 (491)
-.|.++...|+.+ -..+.|+-|+..+++........ .+.++..-..+..|+++ ..| +.+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~------------------~~~~~~~~d~~g~Lv~~-~~g-~~~ 89 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG------------------GFSSGALIDAGGRLIAC-EHG-VRL 89 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC------------------CcccceeecCCCeEEEE-ccc-cEE
Confidence 3577777755544 34678888888766543222211 23344443344444444 343 677
Q ss_pred EECCCCeeeEEEec-----cCCCeeEEEEecCCCCEEEEEeC-----------CCeEEEEecccccCCCceeeEeccccC
Q 011179 254 YDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 254 wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++.+++.....+.. .....+.+... +++.+.++... -|.++.+|. .+..+..+..+-.
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~ 163 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLT 163 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEE
Confidence 77766655333321 11344566664 66666554333 133333332 2344445555555
Q ss_pred cEEEEEEcCCCCEEEEeeCC-CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCce-EEEEeCCceeE
Q 011179 318 GITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSVLR 395 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 395 (491)
.-+.|+||||++.|+.+... +.|.-|++........ +.. ...+.....
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~G-- 213 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEPG-- 213 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCCC--
Confidence 66789999999888777654 6788887753100000 000 011100000
Q ss_pred eeEEEEecccccCCCcEEEEEecCC-eEEEEECCCCcEEEeeccCCCCeeeeEec-CCCC-eEEEEeCC
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP-MLVSSSWD 461 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-p~~~-~l~s~~~D 461 (491)
..- ..+...+|.+-+++..+| .|.+|+.. |+++..+......+++++|- |+.+ +++|+...
T Consensus 214 ~PD----G~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 214 LPD----GMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCC----ceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 000 112334677765555554 89999987 99999888776788999986 3445 44444433
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.32 E-value=0.078 Score=49.88 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=49.3
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEec----C---------------C-CC-eEEEEeC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH----P---------------S-QP-MLVSSSW 460 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s----p---------------~-~~-~l~s~~~ 460 (491)
.+...+|++++.|+...-|.|.++|+.++..+..+++-.+. .+.|- + . .. +++-+-.
T Consensus 311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 34467789999888877799999999999887777654332 11110 0 0 11 3445667
Q ss_pred CCcEEEEcCCCCCCC
Q 011179 461 DGDVVRWEFPGNGEA 475 (491)
Q Consensus 461 Dg~v~iw~~~~~~~~ 475 (491)
-|.|-||.+..+.+.
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 899999999887654
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.098 Score=45.66 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccC--
Q 011179 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-- 304 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 304 (491)
..+.++.|+|+.+.|++......-.|+=-.+|+.++++.- .-.....|.|. .+++++++--.++.+.++.+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence 3689999999999999988888877887778888887752 23455678886 6677777777788888887652100
Q ss_pred --C--CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 305 --K--GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 305 --~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
. .-++......+...-.++|.|....|..+-+-.-+.||.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 0 001111111255678899999998898888877788877653
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.31 E-value=0.023 Score=56.60 Aligned_cols=63 Identities=5% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCcEEEEEecC------CeEEEEECCC-Cc--EEEeeccCCCCeeeeEecCCCCeEEEEeCCC--cEEEEcCCCCC
Q 011179 409 GQKYIYTGSHD------SCVYVYDLVS-GE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNG 473 (491)
Q Consensus 409 ~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg--~v~iw~~~~~~ 473 (491)
++++.+.|+.+ ..+..||..+ .+ .+..+.........+.+ ++++.++||.|| .+-.||..+++
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56766777654 2467899886 43 33444433333334444 788999999998 67777776653
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.30 E-value=0.018 Score=57.41 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=61.7
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC------CeEEEEECCCCccccccccccccccccccc
Q 011179 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.+..||..++.-. ........... .+++. -++...+.|+.+ ..+..||..++........+....
T Consensus 273 ~v~~yd~~~~~W~-~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~------ 343 (557)
T PHA02713 273 CILVYNINTMEYS-VISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC------ 343 (557)
T ss_pred CEEEEeCCCCeEE-ECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh------
Confidence 5678888776322 21111111111 11222 366777777753 357788888776544433221110
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEE--EeccCCCeeEEEEecCCCCEEEEEeCC
Q 011179 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 221 ~~~~~h~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d 291 (491)
.. +++ .-+|+..+.|+.++ .+..||..+++.... +....... +++. -++.+.+.|+.+
T Consensus 344 --------~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 344 --------RF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCV--LDQYIYIIGGRT 408 (557)
T ss_pred --------ce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEE--ECCEEEEEeCCC
Confidence 11 112 22677778887654 488899887765331 11111111 2222 357777778765
No 385
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.28 E-value=0.0064 Score=61.40 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=91.5
Q ss_pred CCCEEEEE-eCCCeEEEEecccccCCCceeeEeccccCc-EEEEEEcC-----CCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 281 SGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 281 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
+.++|+.. .....|+-.|+. .++.+..+..|... |..++-.. +....+.|-.+..+..||.|-......
T Consensus 492 d~~mil~~~~~~~~ly~mDLe----~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLE----RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ccceEeecCCCCCceEEEecC----CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 33444433 345788888998 88899888877654 55443221 123456677788899999985321000
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
......+.... - |+..-+....+||+|+.+|.|++||-...+..
T Consensus 568 ----------------------------~~~~k~Y~~~~----~----Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AK 611 (794)
T PF08553_consen 568 ----------------------------DSQSKQYSSKN----N----FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAK 611 (794)
T ss_pred ----------------------------eccccccccCC----C----ceEEEecCCceEEEEeCCCcEEeecccchhhh
Confidence 00011111111 0 11111224568999999999999995333333
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
..+.+-..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 612 T~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 612 TALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 44567789999999999999887766 4567777753
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0029 Score=58.94 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=94.5
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE-------EEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-------LISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++.++.....++--|++ .++.+..+.-+.. |+-+.+.|+.+. -+.|-.+..|.-||.|-...
T Consensus 348 il~~~~~~~~l~klDIE----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------ 416 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIE----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------ 416 (644)
T ss_pred EeeCCCCcCcceeeecc----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence 34455556677777887 8888888887766 777788886542 23466678899999884221
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
..+..-.+|...... -|+..-.....+|++|+.+|.|++||--....-..+
T Consensus 417 --------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAl 467 (644)
T KOG2395|consen 417 --------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTAL 467 (644)
T ss_pred --------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcc
Confidence 122222233221111 111111225668999999999999997333334456
Q ss_pred ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 437 ~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.+...+|..+..+.||++|+..+ +..+.+-++.-
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred cccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 78889999999999999777665 45666666543
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.15 E-value=0.0019 Score=39.52 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~ 154 (491)
..+|.+++|+|...+||.|+.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0032 Score=59.96 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee-EEEEecCCCCEEEEEeCCCeEEEEecccccCCCc
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 307 (491)
.+.-+.|+|.-..+|.+..+|.|.+..+. .+.+..+.-|...++ +++|. ++|++|+.|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 68889999999999999999999999988 566667766777777 99996 889999999999999999998 555
Q ss_pred eeeEe-ccccCcEEEEEEcC
Q 011179 308 PAGVL-MGHLEGITFIDSRG 326 (491)
Q Consensus 308 ~~~~~-~~~~~~i~~~~~~~ 326 (491)
.+... ......|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 44432 22345666777753
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.0019 Score=53.57 Aligned_cols=107 Identities=19% Similarity=0.320 Sum_probs=73.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc
Q 011179 238 DGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
-+..+++|+.+|.|++|......... .+..-...|-++--.-.++.+..++..||.|+.|++. ..+.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeecccc
Confidence 34579999999999999886321111 1112223333333222455689999999999999997 667776666676
Q ss_pred -CcEEEEEEcCCCCEEEEe--eCCCcEEEEeCCCC
Q 011179 317 -EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKM 348 (491)
Q Consensus 317 -~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~ 348 (491)
.++.....+..++.++.+ |.|..++.|++...
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 666666666677777777 78888888888763
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.23 Score=45.06 Aligned_cols=195 Identities=14% Similarity=0.068 Sum_probs=104.4
Q ss_pred EEcCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc-cccc
Q 011179 131 QFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLAN 208 (491)
Q Consensus 131 ~~s~dg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~-~~~~ 208 (491)
.|.++...| .+--..+.|.-|+..++.... . .... .+.++..-..+..|+++. .-+.+++.+++... ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-F-PSPG---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCC---CcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 467777644 444567889999988763222 1 1122 234444433444455443 33666676655542 2221
Q ss_pred cccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
..... -....+.+...|+|.+.+.... -|.|+.+|. .+..++.+..+-..-+.|+|
T Consensus 104 ~~~~~------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 104 PEDGL------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ccCCC------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence 11111 1125667888889885544333 144555554 45555555565666789999
Q ss_pred ecCCCCEEEEEe-CCCeEEEEeccc--ccCCCce-eeEeccccCcEEEEEEcCCCCEEEEeeCCC-cEEEEeCC
Q 011179 278 GDESGHLIYSGS-DDNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR 346 (491)
Q Consensus 278 ~~~~~~~l~s~~-~dg~i~iwd~~~--~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~ 346 (491)
+ |+++.|+.+. ..+.|.-|++.. ....... ...+....+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 171 S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 171 S-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred C-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 8 6676555554 457888887641 1111111 112222334444566777777765444444 78888776
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.04 E-value=0.21 Score=44.22 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCEEEEEE---cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE-CCCC
Q 011179 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~-~~~~ 201 (491)
.+...++|+||+.+|... ....++++..... ..... .. ..+..-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887665 3345666655433 33322 11 1678889999987777766666666664 2333
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECC---CC--e----eeEEEeccC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN--K----LSLRILAHT 269 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~---~~--~----~~~~~~~h~ 269 (491)
...... + ..... ...|.+++++|||..++... .++.|++--+. .+ . .........
T Consensus 99 ~~~~~~-v---------~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 99 TGEPVE-V---------DWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cceeEE-e---------ccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 321111 0 00000 01799999999999888766 35777776553 22 1 111111335
Q ss_pred CCeeEEEEecCCCCEEEEEeCCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg 292 (491)
..+..+.|. +++.+++.+...+
T Consensus 166 ~~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred Ccceeeeec-CCCEEEEEeCCCC
Confidence 688999998 6666666555433
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.02 E-value=0.29 Score=45.64 Aligned_cols=203 Identities=12% Similarity=0.011 Sum_probs=93.2
Q ss_pred CCCEEEEEE-cCCeEEEEECCCC---eEEEEEeecC-----CCceeEEEEEECCCCCeEEEEEC------CCeEEEEECC
Q 011179 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAK-----SLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVG 199 (491)
Q Consensus 135 dg~~la~~~-~dg~i~iwd~~~~---~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iw~~~ 199 (491)
+.++|+..+ ..+.|+|.|+.+. -.+.+..... ..-.....+-.-|+|+.++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999999853 2233333220 11123334445578988887532 2467788877
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCC
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 259 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--------------------~dg~i~vwd~~~~ 259 (491)
+.+.......... ...--+.+.|.|..+.+++.. ...++.+||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6555443332211 111355677888777777754 2357999999999
Q ss_pred eeeEEEeccC--CCeeEEEEec-CCCCE-EEEEeCCCeEEEEec-ccccCCCceeeEec-----------------cccC
Q 011179 260 KLSLRILAHT--SDVNTVCFGD-ESGHL-IYSGSDDNLCKVWDR-RCLNVKGKPAGVLM-----------------GHLE 317 (491)
Q Consensus 260 ~~~~~~~~h~--~~v~~~~~~~-~~~~~-l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~-----------------~~~~ 317 (491)
+.++++.-.. ..+..|.|.+ |+..+ ++.+.-.++|..|-. ....-..+.+..+. .-..
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 9998886332 2355677752 22333 333334445544432 21000001111111 1134
Q ss_pred cEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCC
Q 011179 318 GITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS 350 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 350 (491)
-|+.|..|.|.++|..+. .+|.|+-||+.....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 578999999999987666 589999999988543
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.97 E-value=0.048 Score=45.67 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=94.4
Q ss_pred CCceEEEEEcCCCCEEEEEEc----------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCe
Q 011179 124 TSRAYVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPI 192 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~ 192 (491)
+.+.+.-..+|+|++.+ |.. .|.++.|-.... +..+. ..-.--+.++|+.+.+.+..- +.+-+
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ--VELIW---NCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccCCC--ceeee---hhccCCccccccccCcEEEEEccCceE
Confidence 56677778899999844 321 345666655432 22111 111124568899887766543 45567
Q ss_pred EEEEE--CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 011179 193 VHIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 193 i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 270 (491)
|.-|| ..+|.......+........+... ..-.++...+|++.++.-..++|...|..+++.+..+.-...
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 77787 666665433333322221111111 112345566888888888899999999999999999988899
Q ss_pred CeeEEEEecCCCCEEEEE
Q 011179 271 DVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~ 288 (491)
.|+|++|--++-.++++.
T Consensus 255 qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVT 272 (310)
T ss_pred ceEEEEecCCCccEEEEE
Confidence 999999974444455443
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.044 Score=55.98 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=74.8
Q ss_pred CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+..++.|+..|.+-..|+...-. .... ...-.++|++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~--------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQ--------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhc--------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 355688888888888877654311 1100 1122348999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeeEEEEe--cCCCCEEEEEeCCCeEEEEecc
Q 011179 260 KLSLRILAHTSDVNTVCFG--DESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
+.++.+..|..+.+.+-+. ..++..++++...|. +|.+.
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 9999888777766655443 134557888877776 66653
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.88 E-value=0.42 Score=45.26 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=88.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEECC-----CCCeEEEEECCCeEEEEECCCCccc----c
Q 011179 136 GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTME----S 205 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~iw~~~~~~~~----~ 205 (491)
...+++|+..|.++||+...+. .............+|..+..-. +...||+ -.-..+.||.+...... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3689999999999999986542 2222333344455788877643 2234444 45677888877221100 0
Q ss_pred ccccccccccccccccCCCCcee--cEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 011179 206 LANVTEIHDGLDFSAADDGGYSF--GIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~----~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 278 (491)
...+.. ...|.. ....+++-| . ..+|.+=+.||.+.+|+-+.-.....+.. .--...++|+
T Consensus 116 ~~~L~~-----------~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~ 183 (418)
T PF14727_consen 116 QYQLEL-----------IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYC 183 (418)
T ss_pred EEEEEE-----------EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEe
Confidence 000000 000111 222333322 2 35788889999999999776554444433 3334557787
Q ss_pred cCCCCEEEEEeCCCeEEEEecc
Q 011179 279 DESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
+..+.|++++.+..+.-|...
T Consensus 184 -~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 184 -PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred -ecCCEEEEecCceeEEEecHH
Confidence 566788888888888888753
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.23 Score=41.78 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 450 (491)
+|++.++.-..++|...|..+|+.+.+++-....|++++|--
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 688888888889999999999999999988889999999963
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.81 E-value=0.3 Score=42.58 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEec-cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 230 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 230 i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
...+.|..+|.++-+.+..| .|+.+|+.+++......- ..-.--.++.. ++++..-.-.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 45677877888778877766 699999999987665432 22233445553 34455555678899999997 55
Q ss_pred ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE
Q 011179 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
+.+..+.- ...=+.++ .+++.|+.......|.++|..+..... .+.
T Consensus 121 ~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~-------------------------------~i~ 166 (264)
T PF05096_consen 121 KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR-------------------------------TIQ 166 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE-------------------------------EEE
T ss_pred eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE-------------------------------EEE
Confidence 56665543 23445666 356777777777889999988754321 122
Q ss_pred EEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc------------C---CCCeeeeEecCC
Q 011179 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------H---TSPVRDCSWHPS 451 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~~~~sp~ 451 (491)
..........+....+- +|.+.|=.-....|...|..+|+.+..+.. + ..-.+.+||.|.
T Consensus 167 V~~~g~pv~~LNELE~i-----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE---EEEEEEE-----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEECCCcEeEEEE-----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 22222222222222221 677777777778899999999998876531 1 245789999988
Q ss_pred CC-eEEEE
Q 011179 452 QP-MLVSS 458 (491)
Q Consensus 452 ~~-~l~s~ 458 (491)
.. +++||
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77 45554
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.79 E-value=0.11 Score=51.85 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCCEEEEEe------CC--CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC-CeEEEE--
Q 011179 229 GIFSLKFSTDGRELVAGS------SD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW-- 297 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~------~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~iw-- 297 (491)
.+.+.+++|+|+.++... .| ..|++++.... . ..+.. ....+.-.|+ +++..|++.... ..+++.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence 577899999999887765 23 35666665332 2 33322 2237888997 777777666533 122222
Q ss_pred ---------ecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 011179 298 ---------DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 298 ---------d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i 342 (491)
++. .+.... .....|..+.|+|||..++... ++.|.+
T Consensus 427 ~~~gql~~~~vd----~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVD----ASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEecc----Cchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 222 111111 2345799999999999988765 466666
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.75 E-value=0.0072 Score=36.97 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=27.5
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011179 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
..|.+++|+|...+||.++.+|.|.++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 37999999999999999999999999998
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0054 Score=62.15 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=73.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
.+..++.|+..|.+...|+... +..........++|++++|+.+|+.++.|-.+|.|.+||+..+...........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 4567899999999999988764 332333345567899999999999999999999999999998776554432211
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.++ .|..+.+..++..++++...|.
T Consensus 174 ----------p~t-~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 ----------PVT-GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ----------ccc-eEEEEEEeCCCcEEEEccCCCc
Confidence 122 3444555556667888877776
No 401
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.67 E-value=0.46 Score=42.78 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccc
Q 011179 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 213 (491)
..++.|+.|+.+| +.+++........+..... .|..+...|+-+.|++-+ |+.+.++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4678899999998 8999984332233322221 499999999888777665 599999998765443321100000
Q ss_pred ccccccccCCCCceecEEEEE---EcCCCCEEEEEeCCCeEEEEECCCC-----eeeEEEeccCCCeeEEEEecCCCCEE
Q 011179 214 DGLDFSAADDGGYSFGIFSLK---FSTDGRELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~---~s~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l 285 (491)
..... .........+..++ -.....+|+++ ....|.+|..... +..+.+ .-...+.+++|. ++.+
T Consensus 79 ~~~~~--~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i 151 (275)
T PF00780_consen 79 KSRSL--PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKI 151 (275)
T ss_pred ccccc--cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEE
Confidence 00000 00000111344444 12233344544 4458888877653 334444 345788999997 5677
Q ss_pred EEEeCCCeEEEEecc
Q 011179 286 YSGSDDNLCKVWDRR 300 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~ 300 (491)
+.|..++ ..+.|+.
T Consensus 152 ~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLN 165 (275)
T ss_pred EEEeCCc-eEEEecC
Confidence 7776554 6677876
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.64 E-value=0.27 Score=47.28 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=86.8
Q ss_pred CCCCceEEEEEcCCCCEEE-EEE--cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC----CeEEEEECCCeEE
Q 011179 122 QTTSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ----RHLVYASMSPIVH 194 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~d~~i~ 194 (491)
..-.+|..++|. ||+.++ +.- .+|.+++=|-. .+.+ -..|..+.|.|-+ ..|++.-....|.
T Consensus 17 qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq-------FEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 17 QAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ-------FEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred hhhccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec-------cceeeeeeecCcccCCCCceEEEeccceEE
Confidence 334578889998 666544 332 23433332211 1111 1258999999953 3566666788999
Q ss_pred EEECCCCccc--cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEEeccCC
Q 011179 195 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTS 270 (491)
Q Consensus 195 iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~ 270 (491)
||.+...... +........-...|+. -...+.|+|....|++-.....-.++++.... ....+ ...+
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pv--------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G 156 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPV--------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSG 156 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCccc--------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCc
Confidence 9998632211 1111011110001111 12346899998888776665544556654332 22233 5578
Q ss_pred CeeEEEEecCCCCEEEE-EeCCCeEEEEecc
Q 011179 271 DVNTVCFGDESGHLIYS-GSDDNLCKVWDRR 300 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~ 300 (491)
.|.|.+|. .+|+.|+. .+..=.-++||-.
T Consensus 157 ~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 157 LIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 89999998 56665544 4444456789854
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.51 E-value=0.38 Score=45.49 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-----CCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
.+...|++|+..|.++||+..........+..-..-..+|..+..-+ +...||+ =.-..+.+|.+......
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~--- 110 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT--- 110 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC---
Confidence 34578999999999999998633322222222233457888877532 2234444 34456777777432111
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC-CcEEEEEecCCeEEEEECCCCcEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
..+...-.+.....|........++..+.-... ..+|.+-+.||.+.+|+-+.-...
T Consensus 111 ----------------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 111 ----------------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred ----------------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE
Confidence 001111223333444444444444444433333 467888899999999996654444
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
..+.. ---..-+++.+.-..|++++.+..|.-|++.
T Consensus 169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 44432 2223346788888899999999999998874
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.48 E-value=0.29 Score=47.03 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=71.5
Q ss_pred cEEEEEEcCC----CCEEEEEeCCCeEEEEECC-----CCeeeEEEeccCC-----CeeEEEEecCCCCEEEEEeCCCeE
Q 011179 229 GIFSLKFSTD----GRELVAGSSDDCIYVYDLE-----ANKLSLRILAHTS-----DVNTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 229 ~i~~~~~s~~----~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~i 294 (491)
.|..+.|.|- ...|++.-....|.||.+. +++.+.....+-. -...+.|+ |....|+.-.....=
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 5889999984 3356666677889999885 2333332222111 12456786 666777666655554
Q ss_pred EEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-CcEEEEeCCC
Q 011179 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~i~iwd~~~ 347 (491)
.++++++. ...++.-....+-|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus 137 V~~sV~~d---~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCD---SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeC---CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 56677632 23333222456789999999999988766443 3467888544
No 405
>PHA03098 kelch-like protein; Provisional
Probab=96.47 E-value=0.16 Score=50.72 Aligned_cols=189 Identities=12% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCCCEEEEEEcCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-----CeEEEEECCCCc
Q 011179 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (491)
Q Consensus 134 ~dg~~la~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~ 202 (491)
.++..++.||.++ .+..||..++.- .........+.....+. -+++..+.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566677776542 577888877633 22211111111222222 257777778765 357788888776
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEecc-CCCeeEE
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAH-TSDVNTV 275 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h-~~~v~~~ 275 (491)
.......+... .+| +++ .-+++..+.|+.+ ..+..||..+++....-... ...-.++
T Consensus 370 W~~~~~lp~~r----------~~~-----~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 433 (534)
T PHA03098 370 WREEPPLIFPR----------YNP-----CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA 433 (534)
T ss_pred eeeCCCcCcCC----------ccc-----eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE
Confidence 65433322111 111 111 1256677777632 45889998877653321100 1111223
Q ss_pred EEecCCCCEEEEEeCCC--------eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEE
Q 011179 276 CFGDESGHLIYSGSDDN--------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKL 342 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~i 342 (491)
+. .++.+++.|+.+. .+.+||.... ....+..+.........+.+ ++++++.|+.+ ..+.+
T Consensus 434 ~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 434 IY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred EE--ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEE
Confidence 33 3456777776432 3778887622 11222111111111122222 56677777654 45777
Q ss_pred EeCCC
Q 011179 343 WDIRK 347 (491)
Q Consensus 343 wd~~~ 347 (491)
||..+
T Consensus 508 yd~~~ 512 (534)
T PHA03098 508 YDDKT 512 (534)
T ss_pred EeCCC
Confidence 87765
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.54 Score=40.93 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=69.1
Q ss_pred EEEEEEcCCC-CEEEEEeCCCe-EEEEECCCCeeeEEEeccCCC--eeEEEEecCCCCEEEEEeCC-----CeEEEEecc
Q 011179 230 IFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRR 300 (491)
Q Consensus 230 i~~~~~s~~~-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 300 (491)
...++|+|.. .-++.+-.-|+ ..++|....+....+...++. .-.=.|+ +++.+|+..-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence 4457888854 34555555554 678898887766555432221 1223676 889998876544 789999987
Q ss_pred cccCCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
.....+..+..|.-.-..+.+.+||+.++.+.
T Consensus 149 ---~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 ---EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 23455667777777778899999999988764
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.29 E-value=1.7 Score=44.98 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--------CeeEEEEec---------------CCCCEEEEEeCCCeEE
Q 011179 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK 295 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~~~~~~~---------------~~~~~l~s~~~dg~i~ 295 (491)
+..|++++.++.|.-.|..+++.+-++..... ....+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677788888999999999988766643221 112233321 1344788888999998
Q ss_pred EEecccccCCCceeeEeccccCcE-------------EEEEEcC--CCCEEEEeeC----------CCcEEEEeCCCCCC
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS 350 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~ 350 (491)
-.|.+ +++.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 88987 6666654421 1111 0111122 1335555542 68899999999775
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCC--ceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCD--QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
.-.......... .....+........ -....+........+-.-...|.+-...+.....-..+.|.-.|..
T Consensus 349 ~W~~~~g~p~~~------~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 349 VWAWDPGNPDPT------APPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred eeEEecCCCCcc------cCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 544322110000 00000000000000 0111111111111000000011110000101111224678889999
Q ss_pred CCcEEEeeccCCCCeee---------eEecC-CCC---eEEEEeCCCcEEEEcCCCCCCCC
Q 011179 429 SGEQVAALKYHTSPVRD---------CSWHP-SQP---MLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~---------~~~sp-~~~---~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
+|+..-.++.....+.+ +.+.. +|+ .++.++.+|.+++.|-.+++...
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 99998877642221222 22322 553 88999999999999998876543
No 408
>PRK10115 protease 2; Provisional
Probab=96.24 E-value=1.8 Score=44.65 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=100.2
Q ss_pred CceEEEEEcCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC------CeE
Q 011179 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i 193 (491)
-.+..+.+||||++|+.+.. ...|++.|+.+|..+.... .. .-..++|++|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34677899999999886543 2358899998874332221 11 11459999999888776543 367
Q ss_pred EEEECCCCcc--ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECC--CCeeeEEEe
Q 011179 194 HIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--ANKLSLRIL 266 (491)
Q Consensus 194 ~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~--~~~~~~~~~ 266 (491)
..+++.++.. ..+.. ... .... ..+..+.++++++..+. ++.+.+++.. .+... .+.
T Consensus 202 ~~h~lgt~~~~d~lv~~--e~~------------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~-~~~ 265 (686)
T PRK10115 202 WRHTIGTPASQDELVYE--EKD------------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF-VFL 265 (686)
T ss_pred EEEECCCChhHCeEEEe--eCC------------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce-EEE
Confidence 7888887732 22221 100 0011 13334558887765543 3568888853 33322 222
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCC-CeEEEEecccccCCCceeeEeccc-c-CcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
.+...+..-... ..+.+++....+ ...+|..+... .......+..+ . ..|..+.+.. ..++++...++.-+++
T Consensus 266 ~~~~~~~~~~~~-~~~~ly~~tn~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 266 PRRKDHEYSLDH-YQHRFYLRSNRHGKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLR 341 (686)
T ss_pred ECCCCCEEEEEe-CCCEEEEEEcCCCCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence 333222221112 233333333222 23344433211 11122333344 2 3577777773 3455556666665555
Q ss_pred eC
Q 011179 344 DI 345 (491)
Q Consensus 344 d~ 345 (491)
-+
T Consensus 342 ~~ 343 (686)
T PRK10115 342 QI 343 (686)
T ss_pred EE
Confidence 44
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.07 E-value=1.1 Score=40.58 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
..+++.|..+ ..+++| ..+ +.+...+.|....++.......+....+....++..+ .++..|.| |...++-..-
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~-l~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAE-LAGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEE-EEETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEE-EEcCCCcE--EEeCCCCCCe
Confidence 4667888643 344444 555 4455556665555543322222233334433344333 33444443 3332222111
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 285 (491)
..... .-...+..+.-++||++++++..-....-||-........-+.-...|..+.|. +++.+.
T Consensus 137 ~~~~~--------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw 201 (302)
T PF14870_consen 137 QAVVS--------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLW 201 (302)
T ss_dssp EEEE---------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EE
T ss_pred eEccc--------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCEE
Confidence 11111 111368888899999988888766666678765443333334456889999998 666665
Q ss_pred EEEeCCCeEEEEecc-cccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 286 YSGSDDNLCKVWDRR-CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
+. ...|.|+.=+.. ..+.-.+.+..+....-.+..++|.+++...++|+..
T Consensus 202 ~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 202 ML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred EE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 54 488898887721 0000001111111122347899999988777766544
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.06 E-value=1.3 Score=41.53 Aligned_cols=189 Identities=13% Similarity=0.122 Sum_probs=86.0
Q ss_pred EEEcCCCCEEEEEEc------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE---------------
Q 011179 130 SQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--------------- 188 (491)
Q Consensus 130 ~~~s~dg~~la~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------------- 188 (491)
+.--|+|+.++++-. -|-+.+.|-++-+.............--+.+.|.|..+.+++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 333468888876432 24578888776555544443333344567788888888888764
Q ss_pred -----CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEEEEEe-CCCeEEEEEC-CCC
Q 011179 189 -----MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGS-SDDCIYVYDL-EAN 259 (491)
Q Consensus 189 -----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~-~dg~i~vwd~-~~~ 259 (491)
....+++||+.+.+.++.+.+.... ..+..+.|.. +..+=++|+ -.++|..|-- +.+
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 2358999999999887776654311 1455677754 344433333 3445555533 333
Q ss_pred ee----eEEEecc-----------------CCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEe-cc--
Q 011179 260 KL----SLRILAH-----------------TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL-MG-- 314 (491)
Q Consensus 260 ~~----~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~-~~-- 314 (491)
+. +..+... ..-|+.|..| .+.++|+.. -.+|.|+.||+.... ..+.+... .+
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~-~Pkl~gqv~lGG~ 358 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPF-NPKLVGQVFLGGS 358 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTT-S-EEEEEEE-BTT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCC-CCcEEeEEEECcE
Confidence 32 1122110 2457899998 566666554 568999999997332 22222221 11
Q ss_pred -------------ccCcEEEEEEcCCCCEEEEe
Q 011179 315 -------------HLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 315 -------------~~~~i~~~~~~~~~~~l~s~ 334 (491)
-.+...-+..|.||+.|...
T Consensus 359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred eccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 11233567778888877654
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.03 E-value=0.93 Score=39.62 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=106.7
Q ss_pred CceEEEEEcCCCCEEEEEEcCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++...........- --.++.. +++.....-.++...+||..+-+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--GEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--ceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 3445678877888877777655 79999999997776655443321 1122332 33444445568899999998766
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-----CCCeeEEEE
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCF 277 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~ 277 (491)
......... .=..++ .|++.|+.......|+.+|..+.+....+.-. -..++.+.|
T Consensus 122 ~~~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 122 KIGTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEEEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred EEEEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 544433221 233444 46777888777888999999888776666522 234566777
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec---------------cccCcEEEEEEcCCCCEEEEeeC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---------------GHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
. +|.+.|-.-....|..-|.. ++..+..+. ...+-.+.|++.|..+.|...+.
T Consensus 183 i--~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 183 I--NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E--TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred E--cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4 45555555555566666665 444333221 01345789999887766655443
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.19 Score=46.62 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=84.0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 130 ~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
+-|....+.|+ +...|.+.=|-+.....-..+......+++|.++.|++|.+.||+--.+.+|.+++....+.......
T Consensus 28 vFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 44443333333 33444455555432211111122234455899999999999999999999999999855443332222
Q ss_pred ccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEEEEecCCCCEEE
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
.... .+..|....|+.+ ..+|.-...| +-+|-.... ..++..+.|...|+-..|+ ++.+.++
T Consensus 107 ~ck~------------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 107 ECKT------------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred Hhcc------------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 1111 1125888999866 5577776666 666665433 2344455788889999998 4444433
No 413
>PHA03098 kelch-like protein; Provisional
Probab=95.88 E-value=0.45 Score=47.60 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeeeEEEec---cCCCeeEEEEecCCCCEEEEEeCCC-----eEEEEecc
Q 011179 238 DGRELVAGSSDD------CIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRR 300 (491)
Q Consensus 238 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~ 300 (491)
++..++.|+.++ .+..||..+++... +.. .... .+++. .++.+++.|+.++ .+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~-~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKN-PGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCccccc-ceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 455667766532 57889988776532 211 1111 22222 3567888887652 46677765
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.77 E-value=1.4 Score=40.90 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=87.0
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEE-EECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.+.++++.+.|++.+++++. .|.+.. ++ ..+....... ......++++.+.++++.++++ ..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 56789999999987776664 554432 22 2222233322 2333479999999999876665 46766533344443
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---ccCCCeeEEEEec
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~ 279 (491)
.-.....+.. .-...+.++.+.+++..++ ++.+|.+. .....++.-.... .-......+.|.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~- 311 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL- 311 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-
Confidence 2221111100 0112578899999887544 55677555 3444444333322 222357778885
Q ss_pred CCCCEEEEEeCCCeEEEEec
Q 011179 280 ESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~ 299 (491)
.+++. +..+..|.|..|+-
T Consensus 312 ~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCce-EEECCCceEEEecC
Confidence 44444 45566788877763
No 415
>PRK10115 protease 2; Provisional
Probab=95.69 E-value=3.1 Score=42.94 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=68.8
Q ss_pred eeEEEEEECCCCCeEEEEECC-----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE
Q 011179 170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
..+..+.|+||+++|+.+... ..|++.|+.++...... + .+ .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i----~~-------------~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L----DN-------------VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c----cC-------------cceEEEEeeCCCEEEE
Confidence 467889999999999876443 26889999877531110 0 00 1145899999987766
Q ss_pred EeCC------CeEEEEECCCC--eeeEEEeccCCCeeEEEEecCCCCEEEEEeC---CCeEEEEecc
Q 011179 245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR 300 (491)
Q Consensus 245 ~~~d------g~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~ 300 (491)
...+ ..|+.+++.++ +....+........-..+.+.++++++..+. ++.+.+++..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 5432 36888999887 3333343333333322333346666554443 4578888854
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.24 Score=48.88 Aligned_cols=180 Identities=12% Similarity=0.067 Sum_probs=90.7
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (491)
-.|+||+.. |..+.+..-.++ .+..+.|+.+.. |++...+|+++++++-....... .+.. ..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-svg~-------e~----- 125 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SVGF-------ES----- 125 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchhhhccc-cccc-------cc-----
Confidence 358888875 444444433333 688999997665 56667899999999865433221 1100 00
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEecCCCCEEEEEeCCCeE--EEEecc
Q 011179 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLC--KVWDRR 300 (491)
Q Consensus 226 h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~i--~iwd~~ 300 (491)
....|..+.+..+| +++-..+|.+.+-+-.......++.. ..-+-.|-+..++..+....-..+-.| .++...
T Consensus 126 ~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 126 QMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred ccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 00135555555555 44444455555443222222222221 111223333332322111111111110 111111
Q ss_pred cccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
+ .......+....+.+..+..||+.++|+--..+|.|.+-+....
T Consensus 204 ~---~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 204 E---SRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred c---ccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 0 11122222223466778899999999999999999988877653
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1.4 Score=38.77 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=93.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
-+..+.++ +++...+..+.-++|.|+.+............. +--.++. -.|++..++..|.-
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--------------gyaygv~--vsGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--------------GYAYGVY--VSGNYAYVADLDDG 149 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC--------------ceEEEEE--ecCCEEEEeeccCc
Confidence 46667775 456667777788999999876643333221110 1223333 35888888886666
Q ss_pred EEEEECCCCe---eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 251 IYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 251 i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
+.+.|+.+.. +..++......-..++.+ |++-+.+..|+-+.+-|+.... ....+... .-...+.++..+++
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~-sPvli~~~-n~g~g~~sv~vsdn 224 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH-SPVLIGSY-NTGPGTYSVSVSDN 224 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC-CCeEEEEE-ecCCceEEEEecCC
Confidence 7888887644 333444444555677776 7788888899999999986221 11122111 12236788888877
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCC
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
-.+++.. +..+.+-|....+.
T Consensus 225 r~y~vvy--~egvlivd~s~~ss 245 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPSS 245 (370)
T ss_pred eeEEEEc--ccceEEEecCCCCC
Confidence 5555543 33477777766543
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.60 E-value=0.077 Score=31.40 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.2
Q ss_pred CceEEEEEcCCC---CEEEEEEcCCeEEEEECCCC
Q 011179 125 SRAYVSQFSADG---SLFVAGFQASQIRIYDVERG 156 (491)
Q Consensus 125 ~~i~~~~~s~dg---~~la~~~~dg~i~iwd~~~~ 156 (491)
+.|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58999988999999999864
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.51 E-value=2.3 Score=40.20 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=73.9
Q ss_pred eEEEEEECCCCCeEEEEE-----------CCC-eEEEEECCC--CccccccccccccccccccccCCCCceecEEEEEEc
Q 011179 171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-----------~d~-~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 236 (491)
....|+|.++|+++++-. ..+ .|.+++-.+ +.......+.. ++ .....+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l-----------~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---EL-----------SMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CC-----------CCccceeEe
Confidence 467899999999776642 123 676665433 22211111111 10 135678888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC-----e--eeE-EEec----cCCCeeEEEEecCCCCEEEEEeCC-------------
Q 011179 237 TDGRELVAGSSDDCIYVYDLEAN-----K--LSL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------- 291 (491)
Q Consensus 237 ~~~~~l~~~~~dg~i~vwd~~~~-----~--~~~-~~~~----h~~~v~~~~~~~~~~~~l~s~~~d------------- 291 (491)
+++ |++++.....++.|.... + .+. .+.. +......++|. +++.+.++-+..
T Consensus 81 ~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 81 VGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred cCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCccC
Confidence 888 444444443334354321 1 111 1211 12346788997 777776654421
Q ss_pred ------CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 292 ------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 292 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
|.|.-++.. +.....+.........++|+|+|+++++-..+
T Consensus 158 ~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 158 SRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 233444432 22222222222334578999999887764433
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.50 E-value=1.6 Score=38.56 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=88.3
Q ss_pred eEEEEEECCCCCeEEEEE---CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 171 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
.+.+.+++++++.++... ....+.++.......... . + ..+..-.|++++...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~----------------g--~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-T----------------G--GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-c----------------C--CccccccccCCCCEEEEEcC
Confidence 588999999999887766 334566665443222111 0 0 05667789999877766666
Q ss_pred CCeEEEEE-CCCCeee-EEEe--ccCCCeeEEEEecCCCCEEEEEe---CCCeEEEEecccccCC-----CceeeEeccc
Q 011179 248 DDCIYVYD-LEANKLS-LRIL--AHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVK-----GKPAGVLMGH 315 (491)
Q Consensus 248 dg~i~vwd-~~~~~~~-~~~~--~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-----~~~~~~~~~~ 315 (491)
+...+++. ...+... ..+. .-...|..+.++ ++|..++... .++.|.+--+...... ..+.......
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 66666663 3333222 1121 112289999998 7777666555 3466666554311111 1122222234
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 316 LEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 316 ~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
...++.+.|.+++.+++.+...+.
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCCC
Confidence 568899999999988777655443
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.40 E-value=2.5 Score=43.37 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCC----------CeE--EEE------EeecCCCceeEEEEEECCC---CC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQK------DILAKSLRWTVTDTSLSPD---QR 182 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~----------~~~--~~~------~~~~~~~~~~v~~~~~sp~---~~ 182 (491)
.-.|..+.++|+|++||..|..|.+.+ .+.. |.. ..+ ..........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468999999999999999888764433 3321 111 111 1112234457999999996 47
Q ss_pred eEEEEECCCeEEEEECCCC
Q 011179 183 HLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~ 201 (491)
.|++-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999754
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=95.28 E-value=0.85 Score=44.81 Aligned_cols=185 Identities=10% Similarity=0.011 Sum_probs=91.5
Q ss_pred CCCEEEEEEcCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC--CeEEEEECCCCcccccc
Q 011179 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA 207 (491)
Q Consensus 135 dg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~iw~~~~~~~~~~~ 207 (491)
++.++++||.++ .+..||..++.-.. .......+.....+ .-++...+.|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667777543 57778887763222 11111111111122 2367777777754 35778887766554433
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEec-cCCCeeEEEEecCCCC
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGH 283 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~ 283 (491)
.++.... ....+ .-+|+..+.|+.++ .+..||..+++....-.- ....-.+++. -++.
T Consensus 348 ~l~~~r~--------------~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~ 409 (480)
T PHA02790 348 SLLKPRC--------------NPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRR 409 (480)
T ss_pred CCCCCCc--------------ccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCE
Confidence 3321110 11112 22677777777553 477888887765432111 1111112222 3456
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCC
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (491)
+.+.|+ .+.+||.... ....+..+.........+.+ ++++.+.|+.+ ..+..||..+
T Consensus 410 IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 410 LFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 666663 5678887521 22223222222222222222 56777887754 3467777765
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.43 Score=44.33 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=69.8
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q 011179 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 303 (491)
++|.++.|++|.+.||+--.+.+|.+++....+....+ +..+..|....|+ .+ .-+|..+..| +-+|...
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~--- 140 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL--- 140 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---
Confidence 38999999999999999999999999998544332222 2334458888997 33 4555555443 4555443
Q ss_pred CCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 304 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
.....++....|...|....|.++.+.++.++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 13345556667888899999999877655443
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.12 E-value=0.65 Score=46.20 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEEC--CCCCeEEEEECCCeEEEEECCCCcc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...-+.-|.-++..++-+....+.|||...+....+... ...+.|.++.|. |+++.+++.+....|.++.-.....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 334444444455444444556799999998853333222 334579999986 6889999999999999986421111
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
......-..... ........ .+|.+..|.++|. |++|+ .+.+.|+|-
T Consensus 109 ~~~~p~w~~i~~--i~i~~~T~--h~Igds~Wl~~G~-LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRK--IDISSHTP--HPIGDSIWLKDGT-LVVGS-GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEE--EEeecCCC--CCccceeEecCCe-EEEEe-CCEEEEECC
Confidence 000000000000 11111112 2788999999996 44444 345888874
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.11 E-value=1.1 Score=44.75 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=73.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEe-cCCCCEEEEEeCCCeEEEEecc-----cccC
Q 011179 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRR-----CLNV 304 (491)
Q Consensus 232 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~-----~~~~ 304 (491)
-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. .++++.+++.+..+.|.++.-. ....
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 34444455544555555679999999887544332 457889999986 3678888888899999998542 1111
Q ss_pred CCceeeE--ecccc-CcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 305 KGKPAGV--LMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 305 ~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
...++.. +..|+ .+|....|.++|.+++.+ ++.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 2223332 23344 578899999999766544 3468888753
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=95.10 E-value=1.8 Score=42.58 Aligned_cols=103 Identities=7% Similarity=-0.103 Sum_probs=54.1
Q ss_pred CCCeEEEEECCC-----eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--CeEE
Q 011179 180 DQRHLVYASMSP-----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIY 252 (491)
Q Consensus 180 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d--g~i~ 252 (491)
++..+++|+.++ .+..||..+++......+..... .. +++ .-++...++|+.+ ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~--------------~~-~~v-~~~~~iYviGG~~~~~sve 334 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL--------------YA-SGV-PANNKLYVVGGLPNPTSVE 334 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh--------------cc-eEE-EECCEEEEECCcCCCCceE
Confidence 345566666542 57778887776554443322110 11 111 2367777777753 3578
Q ss_pred EEECCCCeeeEEEec-cCCCeeEEEEecCCCCEEEEEeCCC---eEEEEecc
Q 011179 253 VYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRR 300 (491)
Q Consensus 253 vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~ 300 (491)
.||..+++....-.- ....-.+++. -++++.+.|+.++ .+..||.+
T Consensus 335 ~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 335 RWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred EEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCC
Confidence 888776654321111 1111112222 3577778887654 46678875
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.92 E-value=2.2 Score=43.06 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=92.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEE------Eee-------------cCCCceeEEEEEECC--CCCeEEEEECCCeEE
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQK------DIL-------------AKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~------~~~-------------~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~ 194 (491)
+++|++|. .+.|.||+.+.-..... ... .......|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777775 67999999865322110 000 000112466665543 346788899999999
Q ss_pred EEECCCCcc--ccc-cccccccccccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eeeE-EEe
Q 011179 195 IVDVGSGTM--ESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KLSL-RIL 266 (491)
Q Consensus 195 iw~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~--~~~~-~~~ 266 (491)
+|.+++=.. ... .............+.-.......+++++++ ...++||+++....|.||-.... +... .-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997642100 000 000000000000000011122378899998 78888999988888888765432 1111 111
Q ss_pred ccCCCeeEEEEecCC----CC-EEEEEeCCCeEEEEec
Q 011179 267 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR 299 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~----~~-~l~s~~~dg~i~iwd~ 299 (491)
.|...|.+|+|.+.+ |. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 356678999997433 22 7888999999988887
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.4 Score=49.72 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=91.1
Q ss_pred eEEEEEECCCCCeEEEEEC--CCeEEEEECCCCccccccc---cccccccccccccCCCCceecEEEEEEcCCCC-EEEE
Q 011179 171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLAN---VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVA 244 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~ 244 (491)
.|..+...+|+...++... +-.|..||+++-....... +....... .......++.|+|.-. ..++
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~--------ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF--------EKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh--------ccccccccccccCCccchhhh
Confidence 5666777788766555433 3378899987543222111 00000000 0111456788888432 3567
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc----ccCcEE
Q 011179 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGIT 320 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~ 320 (491)
...|+.|++..+........-.......++++|+ +.|..++.|-..|++.-|-.. ......+.+ ....|.
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVL 247 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCccee
Confidence 7788989888775543322222456678999998 789999999999999988763 222222211 146789
Q ss_pred EEEEcCCCCEEEEe
Q 011179 321 FIDSRGDGRYLISN 334 (491)
Q Consensus 321 ~~~~~~~~~~l~s~ 334 (491)
+|+|-....++++-
T Consensus 248 ~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVVY 261 (1405)
T ss_pred EEEEecceeEEEEe
Confidence 99998776666643
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=5.6 Score=40.95 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=55.2
Q ss_pred CCceeEEEEEECCCCCeEEEEECCCeEEEEECCC----------CccccccccccccccccccccCCCCceecEEEEEEc
Q 011179 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 236 (491)
.....|..+.++|+|++|+..|..|.+.+ .+.. +..............+ + ...+...|..+.|+
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~----~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERF-F----TSNSSLEIKQVRWH 155 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhh-c----cCCCCceEEEEEEc
Confidence 33457999999999999999988664433 3321 1111111111111000 0 11334589999999
Q ss_pred CC---CCEEEEEeCCCeEEEEECCCCe
Q 011179 237 TD---GRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 237 ~~---~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
|. +..|++-+.|+.+++||+....
T Consensus 156 P~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 156 PWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 95 5789999999999999997543
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=2.1 Score=35.68 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=94.3
Q ss_pred CCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc
Q 011179 238 DGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 238 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
+|.++.+.+.- ..|++||+.+++.+....-....+..=-...-...+..-.-.+|.-..+|.+ ..+.+..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD----TLEELGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH----Hhhhhcccc-c
Confidence 45566665543 4699999999987665432211111111110112222333457788888887 434444332 1
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 316 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.+.-+.++. |+..|+.+....++..-|..+...... ...+..+.+ ..
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~------------------------------v~VT~~g~p-v~ 176 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT------------------------------VQVTDDGVP-VS 176 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce------------------------------EEEEECCee-cc
Confidence 233344433 555577666666777777665432211 111222211 11
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec------------cCCCCeeeeEecCCCC-eEEEE
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------------YHTSPVRDCSWHPSQP-MLVSS 458 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~sp~~~-~l~s~ 458 (491)
.+....|- +|.+.|-.-.+..|...|..+|+.+.-+. .|..-.+.+++.|++. +++||
T Consensus 177 ~LNELE~V-----dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-----DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-----ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11111111 56666666667777777888887765542 3455678899999884 66665
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.75 E-value=3.5 Score=38.17 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCe------EEEEECCCC------eEEEEEeecCCCce--------eEEEEEECCCCCe
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVERG------WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~------i~iwd~~~~------~~~~~~~~~~~~~~--------~v~~~~~sp~~~~ 183 (491)
-+.+..+.+.|++..+++.+.+|. +..+++... -.+..........+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788999976666666677776 555555431 01111111111111 3447788778887
Q ss_pred EEEEECC------CeEEEEECCCCcccccccccccccccccccc--CCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 184 l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
+++.-.+ ..|..++.. |.......++... ..... ..........+++++|+|+.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~---~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF---LPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccccc---ccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7776666 778888876 5554433332211 00000 11223447899999999997776543
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.57 E-value=3.3 Score=39.08 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=24.9
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
|.|.-+|..+++.. .+...-.....++|+|+|+++++-..+
T Consensus 164 g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 45666676555432 232222345789999999887764433
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.56 Score=48.73 Aligned_cols=115 Identities=12% Similarity=-0.001 Sum_probs=75.7
Q ss_pred cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE-----EEe------ccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 229 GIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSL-----RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~-----~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
+|..+...+|+...++.. .+-.|+.||+++-.... -+. .......++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 566677777876554443 34479999997543211 111 12344567888865555677788899999
Q ss_pred EEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+..+. .......-..-....++++|+|.|+.++.|-..|++.=|...-
T Consensus 182 V~~~~----~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTK----QLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhh----hhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 98775 2221111123456789999999999999999999988776543
No 434
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=5 Score=43.09 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVER 155 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~ 155 (491)
.......++|+|...++|.++..|.|.+|-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 345667789999999999999999999998764
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.07 E-value=0.2 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCeeEEEEecCCC--CEEEEEeCCCeEEEEecc
Q 011179 270 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 270 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~ 300 (491)
+.|.++.|+|..+ .+|+.+-.-|.|.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999996666 799999999999999998
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.96 E-value=3.6 Score=39.18 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCCeEEE-EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 011179 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (491)
Q Consensus 180 ~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-------~l~~~~~dg~i 251 (491)
|..+|.. ++....++-.|++.|+.+....+.. .+ -+.|.|+.+ .-++|-++..|
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence 4444443 4444566667777777655444322 22 355666432 12344445555
Q ss_pred EEEECCC-CeeeEEE--e--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 252 YVYDLEA-NKLSLRI--L--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 252 ~vwd~~~-~~~~~~~--~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
.-.|.+- +..+... + .......+..- ....+++.++..|-|++||.- .......+.+....|..+..+.
T Consensus 540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred EEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeec
Confidence 5555432 2221111 1 11122233332 345699999999999999974 3333344566678899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCC
Q 011179 327 DGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 327 ~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
+|+++++.+.. .+.+-|++-.
T Consensus 614 ~Gk~ilaTCk~-yllL~d~~ik 634 (776)
T COG5167 614 NGKHILATCKN-YLLLTDVPIK 634 (776)
T ss_pred CCcEEEEeecc-eEEEEecccc
Confidence 99998877654 6788887653
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.90 E-value=7.1 Score=39.64 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=72.7
Q ss_pred cEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C----e---------eeEEEeccCCCeeEEEEe-cCCCCEE
Q 011179 229 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N----K---------LSLRILAHTSDVNTVCFG-DESGHLI 285 (491)
Q Consensus 229 ~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~-------~----~---------~~~~~~~h~~~v~~~~~~-~~~~~~l 285 (491)
.|+.|.... +...|+++..||.|.+|.+++ . + +...+ .-...++.+++. ....++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 455555443 556899999999999996531 0 0 11111 223467888884 1456788
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-----C-EEEEeeCCCcEEEEeC
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-----R-YLISNGKDQAIKLWDI 345 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~-~l~s~~~dg~i~iwd~ 345 (491)
|+++....|.||-....+... ....-..|...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~-~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERF-YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccc-ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765221111 111111256678888886643 2 7788889999999888
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.85 E-value=9.5 Score=39.70 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEEC----------------CCCCeEEEEECCCeEE
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIVH 194 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~~~d~~i~ 194 (491)
+..|..++.++.|.-.|..+|+.+-+......... ....+++. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777888888889988866655433221110 01112221 1345788888999999
Q ss_pred EEECCCCccccccccccc---cccccccccCCCCceecEEEEEEcC--CCCEEEEEeC----------CCeEEEEECCCC
Q 011179 195 IVDVGSGTMESLANVTEI---HDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEAN 259 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~----------dg~i~vwd~~~~ 259 (491)
-.|.++|+....+..... ..++.. ....-..+.-.| .+..+++|+. +|.|+-+|.+++
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~-------~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGT-------TPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCc-------CCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 999999987643321110 000000 000000111111 1335666643 688999999999
Q ss_pred eeeEEEe
Q 011179 260 KLSLRIL 266 (491)
Q Consensus 260 ~~~~~~~ 266 (491)
+.+-.+.
T Consensus 347 kl~W~~~ 353 (764)
T TIGR03074 347 ALVWAWD 353 (764)
T ss_pred cEeeEEe
Confidence 9876664
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.073 Score=53.37 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=65.2
Q ss_pred ceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEE-----eccCCCeeEEEEec--CCCCEEEEEeCCCeEE
Q 011179 226 YSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRI-----LAHTSDVNTVCFGD--ESGHLIYSGSDDNLCK 295 (491)
Q Consensus 226 h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~-----~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~ 295 (491)
..+.+-.++|-. +-..++ -.-|.+.|||+. .|+....+ .....++.-+.|+| .+.-++..+-.++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 344666777743 111222 233678889875 34332222 23334555566653 3456677777888888
Q ss_pred EEecccccCCCceeeEeccccCcEEEEE-----------EcCCCCEEEEeeCCCcEEEEeC
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGITFID-----------SRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
+.... ......+.+|...++.++ .+|||..++.++.||.+++|.+
T Consensus 209 lL~~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 209 LLNIN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred Eeeec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 76653 112234455766655543 5788888888888888877765
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.50 E-value=2.4 Score=40.27 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=88.4
Q ss_pred CCCCEEE-EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-------EEEEeeCCCcEEEEeCCCCCCc
Q 011179 280 ESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-------YLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 280 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
.+.++|+ .|+....++--|+. .++.+..+.-|..- -+.|.|+.+ .-++|-.+..|.-.|.+-..
T Consensus 477 ~dssli~~dg~~~~kLykmDIE----rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-- 548 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIE----RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-- 548 (776)
T ss_pred CCcceEEecCCCcccceeeecc----cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC--
Confidence 4444444 34445566666776 77777777766554 466777532 12334445555555554321
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
..+....... ....-.|+........|+|+++..|.|++||--.-+
T Consensus 549 -------------------------------NKi~v~esKd---Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r 594 (776)
T COG5167 549 -------------------------------NKIKVVESKD---YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR 594 (776)
T ss_pred -------------------------------Cceeeeeehh---ccccccccccccccCceEEEecCCCceeeehhhcch
Confidence 1111111110 111112232333356799999999999999965444
Q ss_pred EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 432 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
....+.+....|..+..+.+|++|++.+. ..+.+-|++..
T Consensus 595 AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 595 AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence 44556777889999999999997766654 46777777654
No 441
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.01 E-value=8.4 Score=36.54 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=21.1
Q ss_pred CeEEEEECCCCeeeEEEecc--CCCeeEEEEecCCCCEEEEEeC
Q 011179 249 DCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
..+.+||..+++....-... ...-.++.. .++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~--~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVI--KGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEE--ECCEEEEEeee
Confidence 35889998887764321111 111223333 35667777764
No 442
>PLN02193 nitrile-specifier protein
Probab=92.98 E-value=9.9 Score=37.32 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=72.2
Q ss_pred CCCEEEEEEcC-------CeEEEEECCCCeEEEEEeec--CCCceeEEEEEECCCCCeEEEEECC-----CeEEEEECCC
Q 011179 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGS 200 (491)
Q Consensus 135 dg~~la~~~~d-------g~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~ 200 (491)
++.+++.|+.+ ..+.+||+.+..- ...... .............-++++.+.|+.+ +.+.++|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W-~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTW-SISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEE-EeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 45566666643 2477888877532 221110 0000001111112245666777654 3588889888
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEe-----ccCC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRIL-----AHTS 270 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~-----~h~~ 270 (491)
.+...+...... +.....| +++. -++++++.|+.+ ..+..||+.+.+....-. ....
T Consensus 254 ~~W~~l~~~~~~-------P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 254 NEWKLLTPVEEG-------PTPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred CEEEEcCcCCCC-------CCCccce-----EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCC
Confidence 766544322110 0111122 1222 256667777654 347788888776532111 0111
Q ss_pred CeeEEEEecCCCCEEEEEeCC----CeEEEEecc
Q 011179 271 DVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 300 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~ 300 (491)
. ..++. .++++++.++.+ ..+.+||+.
T Consensus 321 ~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 321 G-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred C-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence 1 22222 246677777655 457888876
No 443
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.87 E-value=9.9 Score=37.01 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=79.5
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
-..+|.++.+...|. |.+|+.|| +..||..+++.++.... ..+..|..+..+-.++ |.+|+.+| |.+.+.+..+
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~--~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP--PLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC--cchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcc
Confidence 367899999998885 66777777 66778877755443222 2224576666665565 66677665 6666655422
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-ecc--CCCeeEEEEec
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAH--TSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h--~~~v~~~~~~~ 279 (491)
........ -...|..+.-..+| .+-.|+.+|.. .+........... +.| -+.|.++...
T Consensus 237 ~sn~~~~l---------------p~~~I~ll~qD~qG-~lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D- 298 (671)
T COG3292 237 ASNWGPML---------------PSGNILLLVQDAQG-ELWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLWLD- 298 (671)
T ss_pred ccccCCCC---------------cchheeeeecccCC-CEEEeecccce-eEecCCCCccccccccCCccccccceeec-
Confidence 21111100 01134444444445 47777777733 2333333322211 112 2334455442
Q ss_pred CCCCEEEEEeCCCeEEEEe
Q 011179 280 ESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd 298 (491)
.++ -+-+++.+|.+++-+
T Consensus 299 ~dG-sLWv~t~~giv~~~~ 316 (671)
T COG3292 299 TDG-SLWVGTYGGIVRYLT 316 (671)
T ss_pred cCC-CEeeeccCceEEEec
Confidence 344 455666676666544
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=3.3 Score=44.43 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
....++|+|.-+.++.++.+|.|++|-...-+.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEE
Confidence 566789999999999999999999997655443
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.56 E-value=4.7 Score=34.02 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC---C---eEEEE-
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 254 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d---g---~i~vw- 254 (491)
+.|+.+.....|.+|++..........+... +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4555546677899999985555444444332 278999999999999986432 2 56665
Q ss_pred ECCC----CeeeE-EEec---------------------cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 255 DLEA----NKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 255 d~~~----~~~~~-~~~~---------------------h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
|++. ...+. ++.+ -..++.+++-.|-.|++++.+ ++++.+|.+.
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 2221 11111 1112 234567777777778776543 4588888875
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.54 E-value=0.94 Score=38.95 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=52.2
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEe----ecC-------CCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 131 ~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
.+..++++|++-+.+|.+++||+.+++.+.... ... .....|..+.++.+|.-|++-+ +|....|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 355678999999999999999999875544320 011 2344788899998887776655 5788888876
Q ss_pred CCccc
Q 011179 200 SGTME 204 (491)
Q Consensus 200 ~~~~~ 204 (491)
-+...
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 55543
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.39 E-value=9 Score=35.40 Aligned_cols=138 Identities=9% Similarity=0.019 Sum_probs=67.5
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCeE---EEEEeecCCCceeEEEEEECCCCCeEEEEEC-----CCeEEEEECCCC
Q 011179 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (491)
Q Consensus 135 dg~~la~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~iw~~~~~ 201 (491)
++.+++.|+.+ ..+..||+.+... ...............+.. -+++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55667777754 3567777766532 111111111111111122 25666666664 246888888877
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeeeEEEecc--CCC----
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAH--TSD---- 271 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~h--~~~---- 271 (491)
+...+..++... .....+...++++.+.|+.++ .+.+||..+.+....-... ..+
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 214 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLL 214 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecc
Confidence 665443221100 011112223567777777653 3568898887653211100 011
Q ss_pred -eeEEEEecCCCCEEEEEeCC
Q 011179 272 -VNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 272 -v~~~~~~~~~~~~l~s~~~d 291 (491)
...+.. .++.+++.|+.+
T Consensus 215 ~~~~~~~--~~~~iyv~GG~~ 233 (323)
T TIGR03548 215 GAASIKI--NESLLLCIGGFN 233 (323)
T ss_pred ceeEEEE--CCCEEEEECCcC
Confidence 112222 356788888866
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=3.3 Score=39.55 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=54.8
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEE---------CCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVD---------VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG- 239 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~- 239 (491)
-.|..+..++.|..++.++.+|.+.++= +++|+.............+-.+. ..-.+..++|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-----~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-----TSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-----CceeeeeccccCCcc
Confidence 3688889999999999999999766543 12332222222211111111111 11257788999965
Q ss_pred --CEEEEEeCCCeEEEEECCCCee
Q 011179 240 --RELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 240 --~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
..|..-+.|..|++||+.....
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcch
Confidence 5788888999999999976543
No 449
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.10 E-value=10 Score=35.41 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=21.6
Q ss_pred CeEEEEECCCCeeeEEEe-ccC-CCeeEEEEecCCCCEEEEEeCC
Q 011179 249 DCIYVYDLEANKLSLRIL-AHT-SDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~~l~s~~~d 291 (491)
..+.+||..+++....-. ... ..-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 468899988776543211 111 11223333 356777777653
No 450
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=2.8 Score=44.66 Aligned_cols=147 Identities=14% Similarity=0.269 Sum_probs=83.3
Q ss_pred EcCCeEEEEECCCCeEEEEEeecCCCceeEEEEE--------ECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 143 FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--------LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 143 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
+.|+.+.+|+.+++....... +....|..+. |.|.=+++++.+.--.|.++-+.-.+........ .+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d---~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f--~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYD---GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF--NT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCcccccc---chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc--cc
Confidence 358899999999864444432 2222455543 3444456665555566666655322211111110 00
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE--ECCCC---e-e----------------eEEEe-ccCCC
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY--DLEAN---K-L----------------SLRIL-AHTSD 271 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vw--d~~~~---~-~----------------~~~~~-~h~~~ 271 (491)
++..+. ....|.++....+|+.+++| .||.|+-. ....+ + + +..+. .+..+
T Consensus 171 ~~~i~~-----dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 171 SFKISV-----DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ceeeec-----CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 111111 12268899988889855554 56644422 22211 0 0 11222 45679
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEeccc
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 301 (491)
|..++.. ...+++++-+..|+|.+||+..
T Consensus 245 I~qi~ID-~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITID-NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEec-cccceeeeeccCceEEEEEccC
Confidence 9999994 7788999999999999999973
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.04 E-value=1.7 Score=37.45 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=52.0
Q ss_pred ECCCCCeEEEEECCCeEEEEECCCCcccccc-ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011179 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 255 (491)
+..++.+|++.+.+|.+++||+.+++..... .+...-.... .........|..+.++.+|.-+++- .+|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence 3457889999999999999999988764333 1111111000 0000234478889999888766654 467889998
Q ss_pred CCCCeee
Q 011179 256 LEANKLS 262 (491)
Q Consensus 256 ~~~~~~~ 262 (491)
..-+..+
T Consensus 94 ~~L~~W~ 100 (219)
T PF07569_consen 94 PDLGCWI 100 (219)
T ss_pred cccceeE
Confidence 7655443
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.94 E-value=8.8 Score=34.29 Aligned_cols=224 Identities=15% Similarity=0.168 Sum_probs=116.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eeeEEEec-----cCCCeeEEEEecCC-----------CCEE
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLE------AN-KLSLRILA-----HTSDVNTVCFGDES-----------GHLI 285 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~l 285 (491)
.-+.|+++|.+..-++....+...+||.. .. .++..+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46789999999887887788899999986 12 22333331 23467778886221 1236
Q ss_pred EEEeCCCeEEEEecccccCC-CceeeEecc-ccCc-EEEEEEcC--CCCEEEE-eeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 286 YSGSDDNLCKVWDRRCLNVK-GKPAGVLMG-HLEG-ITFIDSRG--DGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~-~~~~-i~~~~~~~--~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
+.+++||+|.-|........ ......+.. .... ...+++-. .+.+|.. --..++|.++|-.-...... ..+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~--g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP--GSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC--CCcc
Confidence 78899999999986411100 011112211 1122 23445443 2445544 34567888887543211100 0000
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 437 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 437 (491)
..... ..+.| -.+..+.+.- -+.+.. -.++++.=+.|-.-|.|-+||+ .|..+.++.
T Consensus 182 DP~iP---agyAP----------FnIqnig~~l------yVtYA~-qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~ 240 (336)
T TIGR03118 182 DPALP---AGYAP----------FNVQNLGGTL------YVTYAQ-QDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS 240 (336)
T ss_pred CCCCC---CCCCC----------cceEEECCeE------EEEEEe-cCCcccccccCCCcceEEEEcC-CCcEEEEeccC
Confidence 00000 00000 0011111110 000110 1122333334455678999997 688887774
Q ss_pred cCCCCeeeeEecC------CCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 438 YHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 438 ~h~~~v~~~~~sp------~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+.-..-+.|+..| .+.+|+---.||+|..+|..++...
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 3334556777765 4567777677999999998876643
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.84 E-value=0.025 Score=52.58 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=96.1
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE-EEECCCeEEEEECCCCccccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~ 206 (491)
....|-|.+.-++.++.+..+..||-... ...+. ...+...+++|..++..++ .+-..+.+.+|++.+.....+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34567777766888888888999996543 22221 2223566788988876554 456678999999986554332
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
.... .|.... +.|++.+..++.+...|.+.|++..+.+.+...-.|...++++++. ..+ +.+
T Consensus 113 E~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~vi 174 (615)
T KOG2247|consen 113 ESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-YVI 174 (615)
T ss_pred hccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-eee
Confidence 2211 122222 7899999999999999999999988877666665599999999997 433 444
Q ss_pred EEeCC
Q 011179 287 SGSDD 291 (491)
Q Consensus 287 s~~~d 291 (491)
.++.|
T Consensus 175 l~dcd 179 (615)
T KOG2247|consen 175 LCDCD 179 (615)
T ss_pred ecCcH
Confidence 44444
No 454
>PLN02193 nitrile-specifier protein
Probab=91.82 E-value=14 Score=36.30 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=68.3
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCeEEEEEeec---CCCceeEEEEEECCCCCeEEEEECCC-----eEEEEECCCC
Q 011179 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 201 (491)
Q Consensus 135 dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iw~~~~~ 201 (491)
++++.+.|+.+ ..+.+||+.+.. ...+... ...+....... -++++.+.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 55666777654 358888988763 2222111 11111111112 2566677776543 4678888777
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEec----cCCCee
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN 273 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~----h~~~v~ 273 (491)
+.......... .....+| ..+. -+++.++.++.+ ..+.+||+.+.+....-.. ......
T Consensus 305 ~W~~~~~~~~~-------~~~R~~~----~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDS-------FSIRGGA----GLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCC-------CCCCCCc----EEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 65433221100 0001111 1112 256777777655 4589999998876432211 111122
Q ss_pred EEEEecCCCCEEEEEeC
Q 011179 274 TVCFGDESGHLIYSGSD 290 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~ 290 (491)
+++. -++++++.|+.
T Consensus 372 ~~~~--~~~~iyv~GG~ 386 (470)
T PLN02193 372 ASAA--VGKHIVIFGGE 386 (470)
T ss_pred EEEE--ECCEEEEECCc
Confidence 2222 35677778775
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.81 E-value=9.2 Score=34.20 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=119.6
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCc----ccc-ccccccccccccccccCCCCceecEEEEEEcCCCC------
Q 011179 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGT----MES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR------ 240 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~------ 240 (491)
-..|+++|.+.+.++....+...+||..... ... ...++. .....-....+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~---------~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPA---------PPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecC---------CCCCCCCCCccEEEEeCCCceEEcCC
Confidence 5678999999888887778899999986221 100 111110 00000112345555553222
Q ss_pred ------EEEEEeCCCeEEEEECCCCee-----eEEEe-ccCCCe-eEEEEec-CCCCEEEEE-eCCCeEEEEecccccCC
Q 011179 241 ------ELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDV-NTVCFGD-ESGHLIYSG-SDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 241 ------~l~~~~~dg~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~ 305 (491)
.++.+++||+|.-|.-.-+.. ...+. .....| ..+++.. ..+++|+.+ -..++|.++|-.-....
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 367788999999998533222 11221 111223 3445431 224455444 45789999986411100
Q ss_pred CceeeEeccc-----cCc-----------EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeec
Q 011179 306 GKPAGVLMGH-----LEG-----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (491)
Q Consensus 306 ~~~~~~~~~~-----~~~-----------i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
.-..+... -.+ |+...-.++++.=+.+..-|.|-+||+..
T Consensus 176 --~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---------------------- 231 (336)
T TIGR03118 176 --LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---------------------- 231 (336)
T ss_pred --CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----------------------
Confidence 00011110 000 11111122222222333445677777654
Q ss_pred CCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc--ccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC------C
Q 011179 370 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV--YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT------S 441 (491)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~ 441 (491)
+.++.+.....+.....+...|. =...+.+|+---.||+|..||..+++.+..+.... .
T Consensus 232 -------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~ 298 (336)
T TIGR03118 232 -------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVD 298 (336)
T ss_pred -------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEec
Confidence 55665544333333333333222 12256777766679999999999999888886433 3
Q ss_pred CeeeeEecC
Q 011179 442 PVRDCSWHP 450 (491)
Q Consensus 442 ~v~~~~~sp 450 (491)
.++.++|..
T Consensus 299 GLWgL~fGn 307 (336)
T TIGR03118 299 GLWSLTFGN 307 (336)
T ss_pred CeEEeeeCC
Confidence 467788865
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=91.74 E-value=11 Score=35.00 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCeEEEEEeecC-CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~-~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
...+++++|..+.+-+|+|. +|. ||.. +.|+...+..... .....+.++.|.++ ..+++ +..+.|.. ..+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCC
Confidence 56889999986666666664 553 3333 3343333322111 12234778888654 33443 44444322 22222
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEecC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~ 280 (491)
+.-........ ..++...+ ....+ +..+ .++..|.|..=+ +.++.-.. ...-...+..+.+. +
T Consensus 119 ~tW~~~~~~~~----------~~~~~~~i--~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~-~ 182 (334)
T PRK13684 119 KNWTRIPLSEK----------LPGSPYLI--TALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRS-P 182 (334)
T ss_pred CCCeEccCCcC----------CCCCceEE--EEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEEC-C
Confidence 22111110000 00111112 22222 2223 334455443322 22222111 12234567888886 6
Q ss_pred CCCEEEEEeCCCeEEE-EecccccCCCc-eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCC
Q 011179 281 SGHLIYSGSDDNLCKV-WDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~i-wd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
++.+++++ ..|.+.. +|- .++ -......-...++.+.+.++++.++++ ..|.+.+=......
T Consensus 183 ~g~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~--------- 246 (334)
T PRK13684 183 DGKYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE--------- 246 (334)
T ss_pred CCeEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC---------
Confidence 66666554 4455432 221 111 111222334678899999999877665 45655432121110
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEeCC-c-eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-S-VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
.-...... . ....+ +...+.+++..+++ +.+|.+. .....|+.-...
T Consensus 247 -------------------------sW~~~~~~~~~~~~~l----~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~ 295 (334)
T PRK13684 247 -------------------------SWSKPIIPEITNGYGY----LDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKD 295 (334)
T ss_pred -------------------------ccccccCCccccccce----eeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeEC
Confidence 00000000 0 00011 22234456665554 4567554 344445443333
Q ss_pred c---cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 437 K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 437 ~---~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
. .-......+.|..+++.++ .+..|.|..|+-
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 2 2223577888887776655 556788887763
No 457
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.58 E-value=13 Score=35.34 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCeeeEEEeccCCCe--eEEEEecCCCCEEEEEeCC
Q 011179 238 DGRELVAGSSD-----------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 238 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~d 291 (491)
++...+.|+.. ..+..||..+.+....-....... .+.... .++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 56666776643 247788988776543211101111 112221 356777777754
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.39 E-value=0.15 Score=51.23 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeE-----------ecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-----------WHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-----------~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++.-++..+-.++.|++.+..+... ..+.+|...+++++ .||||..|++++.||.+++|.+.-.+
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 3557788888888888877655433 44556877766654 58999999999999999999875443
No 459
>PLN02153 epithiospecifier protein
Probab=91.36 E-value=12 Score=34.82 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCEEEEEEcC-------CeEEEEECCCCeEEEEEeecC-CCce---eEEEEEECCCCCeEEEEECC-----CeEEEEEC
Q 011179 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAK-SLRW---TVTDTSLSPDQRHLVYASMS-----PIVHIVDV 198 (491)
Q Consensus 135 dg~~la~~~~d-------g~i~iwd~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~ 198 (491)
++++++.|+.+ ..+.+||+.+..- ....... .... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEE-EEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666667653 3578889887632 2211111 0000 1222222 46677777653 35788888
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeee
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------DCIYVYDLEANKLS 262 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~ 262 (491)
.+.+......+.... .+.....| +++ .-++++++.|+.+ ..|.+||..+.+..
T Consensus 109 ~t~~W~~~~~~~~~~-----~p~~R~~~-----~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEG-----GPEARTFH-----SMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCC-----CCCCceee-----EEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 877654433221000 00001112 122 2356667777643 25788998877654
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.08 E-value=1.4 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCCcEEEEEec-CCeEEEEECCCCcEEEeeccCCCCeeeeEe
Q 011179 408 TGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 408 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 448 (491)
|+++.|+++.. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 46777776654 789999999999888887653 33344544
No 461
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.84 E-value=12 Score=33.81 Aligned_cols=205 Identities=16% Similarity=0.222 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCEEEE--EEcC----------CeEEEEECCCCeEEEEEeecCCC---ceeEEEEEECCCCC----eEEE
Q 011179 126 RAYVSQFSADGSLFVA--GFQA----------SQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQR----HLVY 186 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~--~~~d----------g~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~----~l~~ 186 (491)
.|+.+...++|++-+. |.-+ -.|.+||+.+++.+++....... ...+..+.+..... .+|.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3677888887765442 3211 27899999999877776554322 34677787766321 3333
Q ss_pred EE--CCCeEEEEECCCCcccccccccccccc--ccccccC-CCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCC
Q 011179 187 AS--MSPIVHIVDVGSGTMESLANVTEIHDG--LDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 187 ~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~ 258 (491)
-+ ..+-|.|+|+.+++..++......... ..+.... .......+..++.+| +++.|....-.+ -.+|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 32 235899999999876554433211111 0000000 000112377777766 777777765444 23343322
Q ss_pred C--------------eeeEEEeccC-CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-cc-c-cCcEE
Q 011179 259 N--------------KLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG-H-LEGIT 320 (491)
Q Consensus 259 ~--------------~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~-~-~~~i~ 320 (491)
. +.+..+ +.. .....+++. ++|.++++--..+.|..|+....-. ......+ .. . -....
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~-~~~~~~l~~d~~~l~~pd 237 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYT-PENFEILAQDPRTLQWPD 237 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB--GCCEEEEEE-CC-GSSEE
T ss_pred HHhhCccccccccccccceec-cccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcC-ccchheeEEcCceeeccc
Confidence 1 011222 222 355667775 7888998989999999999862111 1111222 11 1 34677
Q ss_pred EEEEcC--CCCEEEEe
Q 011179 321 FIDSRG--DGRYLISN 334 (491)
Q Consensus 321 ~~~~~~--~~~~l~s~ 334 (491)
.+.+.+ +|.+.+..
T Consensus 238 ~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEE-T--TS-EEEEE
T ss_pred eeeeccccCceEEEEE
Confidence 888888 66554444
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=20 Score=36.25 Aligned_cols=192 Identities=10% Similarity=0.151 Sum_probs=91.6
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE--e--ccccCcEEEEEE
Q 011179 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L--MGHLEGITFIDS 324 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~~~i~~~~~ 324 (491)
-.|+||++. |..+.++.-..+.+-.+.|+ +...|++...+|++.+|++- +..+.. . ......|..+.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence 458888864 44444444444588899996 45667788999999999984 222221 1 112233444444
Q ss_pred cCCCCEEEEeeCCCcE-EEEeCCCCCCcccccCCCc---cceeeeeeecCCCCCcc-cc-----CCCCceEEEEeCCcee
Q 011179 325 RGDGRYLISNGKDQAI-KLWDIRKMSSNASCNLGFR---SYEWDYRWMDYPPQARD-LK-----HPCDQSVATYKGHSVL 394 (491)
Q Consensus 325 ~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 394 (491)
..+|-.+.+. +|.+ .+-+...+........... ...|....-...+.... +. +.+.........|..
T Consensus 136 f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 136 FHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL- 212 (829)
T ss_pred ecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence 4455444333 3333 3333333211111111111 11222221111111100 00 000000000011110
Q ss_pred EeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--cCCCCeeeeEecCCC
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQ 452 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~ 452 (491)
...........+||+.++|+-=...|.|.+-+....+.+..+. .|. +-..++|.-+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 0011112223567789999999999999999888777776665 332 33367776544
No 463
>PLN02153 epithiospecifier protein
Probab=89.81 E-value=17 Score=33.89 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeee
Q 011179 238 DGRELVAGSSD-----DCIYVYDLEANKLS 262 (491)
Q Consensus 238 ~~~~l~~~~~d-----g~i~vwd~~~~~~~ 262 (491)
++++++.|+.+ ..+.+||..+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 46667777653 35888998877653
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.75 E-value=15 Score=33.04 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=59.7
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEE
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~ 264 (491)
..|++||..+.+...... +-.+.|.++.|..+.+.++.|. ....+..||+.+.....
T Consensus 16 ~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~- 78 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS- 78 (281)
T ss_pred CEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-
Confidence 469999998887654432 2344899999997777666664 35568899998876532
Q ss_pred Eec-----cCCCeeEEEEecCCCC-EEEEEe-C--CCeEEEEecc
Q 011179 265 ILA-----HTSDVNTVCFGDESGH-LIYSGS-D--DNLCKVWDRR 300 (491)
Q Consensus 265 ~~~-----h~~~v~~~~~~~~~~~-~l~s~~-~--dg~i~iwd~~ 300 (491)
+.. -.++|..+.+...+.. +.+.|. . +..|..||=.
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 222 2478888888644544 443443 2 3356667643
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.71 E-value=18 Score=33.88 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCCEEEEEEcC-----------CeEEEEECCCC
Q 011179 134 ADGSLFVAGFQA-----------SQIRIYDVERG 156 (491)
Q Consensus 134 ~dg~~la~~~~d-----------g~i~iwd~~~~ 156 (491)
-++++.+.|+.+ ..+..||..++
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 367777777753 24778888776
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.46 E-value=2.9 Score=34.52 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.6
Q ss_pred CcEEEEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 011179 317 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 317 ~~i~~~~~~~~~------~~l~s~~~dg~i~iwd~~~ 347 (491)
..+..++|||.| -+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4788899999999998764
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.43 E-value=0.048 Score=50.81 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=93.4
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCe
Q 011179 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDC 250 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~-~~~dg~ 250 (491)
.....|-|.+.-++.++.+..+..||-......... .++....++|..++..+++ +-..+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------------------~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------------------PTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccC------------------CchhHhhhhhccccchhhhhhhcCCC
Confidence 445678888877999988888999986543322111 1125667888888775544 556788
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
+++||+.+.....--.+....-.-+.|+ +....++.+...|.+.|++.. ..+.+...-.|...++++++.+.+.
T Consensus 99 iylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~- 172 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY- 172 (615)
T ss_pred eeechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce-
Confidence 9999997653211111111111226776 677778888899999999976 4444444444889999999998764
Q ss_pred EEEeeCCC
Q 011179 331 LISNGKDQ 338 (491)
Q Consensus 331 l~s~~~dg 338 (491)
.+.++.|.
T Consensus 173 vil~dcd~ 180 (615)
T KOG2247|consen 173 VILCDCDN 180 (615)
T ss_pred eeecCcHH
Confidence 44444443
No 468
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.17 E-value=17 Score=33.12 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCeEEEEECCCeEEEEECCC--CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 011179 181 QRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE 257 (491)
Q Consensus 181 ~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~ 257 (491)
+++|+.|+.+|...+. +.. ++...+. +...|+++...+.-+.|++-+ ....++++++.
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~------------------~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI------------------GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec------------------CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 3689999998855544 543 2222222 222788999998777665544 34459999984
Q ss_pred CCee---------------eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEec
Q 011179 258 ANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 258 ~~~~---------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 299 (491)
.-.. ......|.......+........++++....+|.++..
T Consensus 74 ~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~ 130 (302)
T smart00036 74 ALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW 130 (302)
T ss_pred HhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence 3221 01122444444444443222234455556667777643
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.03 E-value=16 Score=32.48 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=73.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
-+..+.++. ++...+..+.-++|.|+.+......+.. ..+.-.++.. .|++...+..|.-+.+.|+.... ..
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps-sP 161 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS-SP 161 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC-Cc
Confidence 355667764 4666777777799999988765443322 1233344444 58898888866677788886432 33
Q ss_pred ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
....+.......-..++.| |++-..+..|+-+.+.|+....
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC
Confidence 3444444444444566665 5677777889999999998754
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.74 E-value=16 Score=35.31 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEECCCC------CeEEEEE---------
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQ------RHLVYAS--------- 188 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~------~~l~~~~--------- 188 (491)
..|+|.|||++|++--..|.|++++..++......... .........|+++|+- .+|....
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCeEEEEECCCC--------ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 189 -MSPIVHIVDVGSG--------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 189 -~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
....|.-|.+... ...........| .-..|+|.|||.++++.+..+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H---------------~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH---------------NGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCc---------------CCceEEECCCCcEEEEECCCC
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.42 E-value=21 Score=33.02 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=34.0
Q ss_pred CCCEEEEEeC-----CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCe----EEEEecc
Q 011179 238 DGRELVAGSS-----DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNL----CKVWDRR 300 (491)
Q Consensus 238 ~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~----i~iwd~~ 300 (491)
+++..+.|+. ...+..||+.+.+....-. .........+.. .++++.+.|+.++. +.+||+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE-ECCEEEEEcCCCCccccceEEEecC
Confidence 5666666664 2468899988776533211 111111222222 35678888876643 4577775
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=6.2 Score=42.28 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=31.6
Q ss_pred cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+..+|..++.......|.+-+..|+|.+|++..++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence 56778999999888888889999999999999886543
No 473
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.12 E-value=28 Score=34.23 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=66.9
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-------------CCeEEEE
Q 011179 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (491)
Q Consensus 130 ~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------d~~i~iw 196 (491)
+.+-++|.+++... ..++.+|+. |+.+...........-=..+...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 67788998877554 778888886 4344443333311001124667899999888772 1246666
Q ss_pred ECCCCccccccccccccccccc-----------cccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
| .+|+...........+.... ........-..+.++.+.+ ++.+++++-.-..|...|..+++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 77776665555443322211 0001112223588999999 555455544455899999888887666
Q ss_pred Eecc
Q 011179 265 ILAH 268 (491)
Q Consensus 265 ~~~h 268 (491)
+-.+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6543
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.00 E-value=11 Score=29.22 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=66.5
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCe--------EEEEEeecCCCceeEEEEEECC-----CCCeEEEEECCCeEEE
Q 011179 129 VSQFSADGSLFVAGFQASQIRIYDVERGW--------KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHI 195 (491)
Q Consensus 129 ~~~~s~dg~~la~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~i 195 (491)
.-.|......|++++..|.|.|++..... .+..+.. ...|++++-.+ +...|+.|+ ...|..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEec-cceEEE
Confidence 44666667789999999999999866431 1222211 22566665433 234566655 567999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSL 263 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~ 263 (491)
||+....-.....++. .|.++.+-. ...-++..+.+..|.-||.+..+..-
T Consensus 78 YDV~~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 78 YDVENNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEcccCchhhhhhCcc-----------------ceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 9998776544433332 566665532 22234554556667777776655443
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.93 E-value=18 Score=31.67 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=48.1
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-C--CeEEEEecccccCCCceee--EeccccCcEEEEEEc
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-D--NLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSR 325 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 325 (491)
-.+||+.+++....-......+..-.+. ++|++|.+|+. + ..+++++............ ........-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4578888876532222223333334554 78999998875 2 3578887642110111111 111223344556667
Q ss_pred CCCCEEEEeeCC
Q 011179 326 GDGRYLISNGKD 337 (491)
Q Consensus 326 ~~~~~l~s~~~d 337 (491)
|||+.|+.|+..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899999999887
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.88 E-value=2 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.6
Q ss_pred CCCceEEEEEcCCCCEEEEEEc-C--CeEEEE
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~-d--g~i~iw 151 (491)
.........|||||++|+-++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999998886554 4 555554
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.69 E-value=40 Score=35.53 Aligned_cols=173 Identities=10% Similarity=0.019 Sum_probs=99.4
Q ss_pred CCCCceEEEEEc---C----CCCEEEEEEcCCeEEEEEC------CCC---------eEEEEEeecCCCceeEEEEEECC
Q 011179 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDV------ERG---------WKIQKDILAKSLRWTVTDTSLSP 179 (491)
Q Consensus 122 ~h~~~i~~~~~s---~----dg~~la~~~~dg~i~iwd~------~~~---------~~~~~~~~~~~~~~~v~~~~~sp 179 (491)
....+|..++|+ . ..++|++= ....+.|+.. ... ..+..+........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 467899999998 3 22466655 3446677761 110 12222222222233678899998
Q ss_pred C-CCeEEEEECCCeEEEEECCCCcccc--ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011179 180 D-QRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 180 ~-~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
. .+.||+....|...||++....... .........+.- ..+......-..+.|.++.+.|++++.. .+.++|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 4 4789999999999999993221111 111111111111 0011111355678999888888887655 5899999
Q ss_pred CCCeeeEEE--eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 257 EANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 257 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
++......+ ......|..+.-++.+..+++.-+. ..|...++.
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~ 276 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVK 276 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEcc
Confidence 987653312 2345678888887544444444433 466666765
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.50 E-value=9.8 Score=33.20 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred EEcCCCCEEEEEEc-C--CeEEEEECCC----CeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC-eEEEEECCCC-
Q 011179 131 QFSADGSLFVAGFQ-A--SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG- 201 (491)
Q Consensus 131 ~~s~dg~~la~~~~-d--g~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iw~~~~~- 201 (491)
+|-+||++|.+|+. + ..+++++... .............++..+ ...-|||+.|+.|+... +..+|.-...
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 57889999999875 2 3588888654 111111111223333333 34457999999988763 3344443211
Q ss_pred -ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 011179 202 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
.......+....... ...----+...|+|+.++.+..+. .|||..+++.++.+..
T Consensus 152 ~~~~~~~~l~~~~~~~---------~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTL---------PNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred CCceeeecchhhhccC---------ccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 111110000000000 000112356679999888887654 5679888877666654
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.16 E-value=32 Score=34.86 Aligned_cols=69 Identities=14% Similarity=0.036 Sum_probs=44.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
...+.+++-+|.|+-++.+..||.|++|+....... ++... ..+-..+.|...| |+++..|..+--|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEE---AKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhh---cCCccceeeeccc--eEEEeccchhheeec
Confidence 456788888999999999999999999998754221 11111 1123345555444 556666776766753
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.03 E-value=18 Score=30.70 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=60.5
Q ss_pred CEEEEEeCCCeEEEEECCC--CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC------eEEEE-ecccccCCCceee
Q 011179 240 RELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------LCKVW-DRRCLNVKGKPAG 310 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~~ 310 (491)
..|+.+.....|.+|++.+ .+...++ ..-+.|..+.++ ..|++|++--.+. .+|+| +.+.......++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~-~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYS-EAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEec-cccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4555556778899999983 3344445 334889999998 7799999864432 56665 2221111112221
Q ss_pred -Eeccc---------------------cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 311 -VLMGH---------------------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 311 -~~~~~---------------------~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
++.|| ..+..+++..|-.--|+.|+ ++.+.+|.+..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 22221 33456666666433344444 45788998765
No 481
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.01 E-value=4.4 Score=23.70 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=27.0
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 237 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
|++++|+++. .++.|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677666655 578999999998888777654 233344443
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.73 E-value=13 Score=28.79 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=69.8
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
-.|......|++++..|.|.|++.......... ....+..+.-......+....
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------~~~~i~~LNin~~italaaG~ 57 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------QDSDISFLNINQEITALAAGR 57 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------ccCceeEEECCCceEEEEEEe
Confidence 346556667888888899999987653321110 124455555544444444444
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecC----CCCeEEEEeCCCcEEEEcCCCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP----SQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.+ +.+...|+.|+. ..+..||+.....+..-. -...|+++.+-. +.++++. +.+..|.-+|....+
T Consensus 58 l~~--~~~~D~LliGt~-t~llaYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 58 LKP--DDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNE 128 (136)
T ss_pred cCC--CCCcCEEEEecc-ceEEEEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcE
Confidence 433 234556777765 569999998776554333 235677776632 2334444 445667666665543
No 483
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=86.58 E-value=38 Score=34.04 Aligned_cols=202 Identities=13% Similarity=0.114 Sum_probs=106.9
Q ss_pred ceEEEEEcCCCCEEEEEE-----cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe---EEEE-
Q 011179 126 RAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIV- 196 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---i~iw- 196 (491)
.+-.++.|||++++|-+- ..-++++-|+.++..+.... .+....++|.+|++.|.....|.. =++|
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 466788999999998653 33469999999985544322 224667899999988887665432 2233
Q ss_pred -ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEe-ccCCC
Q 011179 197 -DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL-AHTSD 271 (491)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~-~h~~~ 271 (491)
.+.+.......-..+.. .. --.++.-+.+.++|+.... .+.+++.+.........+. .-...
T Consensus 205 h~~gt~~~~d~lvyeE~d------------~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 205 HRLGTPGSSDELVYEEKD------------DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred EecCCCCCcceEEEEcCC------------Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 23321110000000000 11 1223334456667766553 3568888887654322221 11111
Q ss_pred e-eEEEEecCCCCEEEEEeCCC-eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC---cEEEEeCC
Q 011179 272 V-NTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIR 346 (491)
Q Consensus 272 v-~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~ 346 (491)
+ ..+.- ....+++-...+| ..+|..... ......-..+..|...+.--.++--..+|+....++ .|++++..
T Consensus 272 ~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~ 348 (682)
T COG1770 272 VEYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRK 348 (682)
T ss_pred cEEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecC
Confidence 1 12221 2233444444455 556665543 112233345566777766666666666777665543 47777776
Q ss_pred CC
Q 011179 347 KM 348 (491)
Q Consensus 347 ~~ 348 (491)
+.
T Consensus 349 ~~ 350 (682)
T COG1770 349 TG 350 (682)
T ss_pred CC
Confidence 53
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.22 E-value=30 Score=33.43 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEC-------CCCeeeEEE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDL-------EANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~-------~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
...+..+...|.-+++. |..++||+. ..+.....+ .++...+.++ ++.....|.|+.|+--
T Consensus 28 ~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v---------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 28 PCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV---------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp S-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE---------EEEE-TT-EEEEES-T
T ss_pred ceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE---------EEEEcCCCCEEecccc
Q ss_pred cccCCCceeeE----------eccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecC
Q 011179 301 CLNVKGKPAGV----------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 301 ~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
........... +......+......+.+ ++.+..+|.|.+...+...
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~--------------------- 153 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSN--------------------- 153 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS---------------------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCC---------------------
Q ss_pred CCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC----CCCeeee
Q 011179 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDC 446 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~ 446 (491)
+---|..-..++.........+.....+..- ...|.++
T Consensus 154 --------------------------------------g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v 195 (422)
T PF08801_consen 154 --------------------------------------GKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKIVQV 195 (422)
T ss_dssp ---------------------------------------EEEEE-TT-----------------------------EEEE
T ss_pred --------------------------------------CcEEEEEEcCcCCccccccccCceeccccCCcccchhceeeE
Q ss_pred EecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 447 SWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 447 ~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+..+..+.|++...+|.|.+|++..+.
T Consensus 196 ~~d~~r~~ly~l~~~~~Iq~w~l~~~~ 222 (422)
T PF08801_consen 196 AVDPSRRLLYTLTSDGSIQVWDLGPGG 222 (422)
T ss_dssp EEETTTTEEEEEESSE-EEEEEE-SS-
T ss_pred EecCCcCEEEEEeCCCcEEEEEEeCCC
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.11 E-value=30 Score=32.48 Aligned_cols=152 Identities=11% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCE--EEEEe-CC---CeEE
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-SD---DCIY 252 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~--l~~~~-~d---g~i~ 252 (491)
|...+|+....++-+.+||++......+. ..... . -.-...+.+ .|+. |++++ .+ ..|+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~N-N-----------VDvrygf~l--~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPN-N-----------VDVRYGFPL--NGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EE-E-----------EEEEEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcc-e-----------eeeecceec--CCceEEEEEEecCcCCCCeEE
Confidence 34567778888889999999876654331 11000 0 001222333 3432 44444 32 4689
Q ss_pred EEECCC--CeeeEEEec-------cCCCeeEEEEe--cCCCC-EEEEEeCCCeEEEEeccccc---CCCceeeEeccccC
Q 011179 253 VYDLEA--NKLSLRILA-------HTSDVNTVCFG--DESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLE 317 (491)
Q Consensus 253 vwd~~~--~~~~~~~~~-------h~~~v~~~~~~--~~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~ 317 (491)
+|.+.. +. +..+.. ....+..+|+. +.++. +++....+|.+..|.+.... ...+.++.+.. ..
T Consensus 131 ~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s 208 (381)
T PF02333_consen 131 LFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS 208 (381)
T ss_dssp EEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred EEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence 997753 33 233321 11345667763 33444 56667889999888775221 12345666654 35
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+..|........|..+-++.-|.-|+.+.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCC
Confidence 788888888888999998887777777654
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.78 E-value=4.5 Score=40.66 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred CCCCEEEEEEcCCeEEEEECCC----CeEEEEEeecC-------------------CCceeEEEEEECC----CCCeEEE
Q 011179 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 186 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~sp----~~~~l~~ 186 (491)
++...|+.+..||.+....... +.......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999888887764 22222211111 1123466677776 7789999
Q ss_pred EECCCeEEEEECCCCcccccc
Q 011179 187 ASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~ 207 (491)
.+.|+.+++||+.++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999884443
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.60 E-value=30 Score=32.02 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=83.2
Q ss_pred eEEEEEECCCCCeEEEEECCCe------EEEEECCC--Cccc--cccccccc--cccccccccCCCCceecEEEEEEcCC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGS--GTME--SLANVTEI--HDGLDFSAADDGGYSFGIFSLKFSTD 238 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~------i~iw~~~~--~~~~--~~~~~~~~--~~~~~~~~~~~~~h~~~i~~~~~s~~ 238 (491)
.+..+.+.|++..+++.+.++. +..+++.. +... ........ ..+..+. .-.....+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~-----~~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFP-----KNGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCC-----cCCCChhHeEEecC
Confidence 5788888876666666677776 55555543 1110 00000000 0011110 01114557888778
Q ss_pred CCEEEEEeCC------CeEEEEECCCCeeeEEEe---------------ccCCCeeEEEEecCCCCEEEEEeC-----CC
Q 011179 239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN 292 (491)
Q Consensus 239 ~~~l~~~~~d------g~i~vwd~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~~l~s~~~-----dg 292 (491)
|.++++.-.+ ..|+.++.. ++....+. ..+.....++++ ++++.|+++.. |+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence 8877776666 788888876 55444331 234567899997 77886665543 22
Q ss_pred ---------eEEEEeccccc---CCCceeeEecc-----ccCcEEEEEEcCCCCEEEE
Q 011179 293 ---------LCKVWDRRCLN---VKGKPAGVLMG-----HLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 293 ---------~i~iwd~~~~~---~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s 333 (491)
.++++...... ........+.. ....|..+.+-+++++|+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 15555443111 01111222222 3456788888888886664
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.35 E-value=6.4 Score=32.43 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.9
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 011179 229 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 229 ~i~~~~~s~~~------~~l~~~~~dg~i~vwd~~~ 258 (491)
.+.+++|||.| ..|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 3788889999999997653
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.16 E-value=4.4 Score=23.34 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=19.4
Q ss_pred cCCCCeeeeEecCCCCeEEEEe-CC--CcEEEE
Q 011179 438 YHTSPVRDCSWHPSQPMLVSSS-WD--GDVVRW 467 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~~l~s~~-~D--g~v~iw 467 (491)
.....-....|||||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999666554 44 666555
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.06 E-value=5.7 Score=39.94 Aligned_cols=87 Identities=23% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCCCeEEEEECCCeEEEEECCCCc----cccccccccc-----ccccc-ccccCCCCceecEEEEEEcC----CCCEEEE
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGLD-FSAADDGGYSFGIFSLKFST----DGRELVA 244 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~-----~~~~~-~~~~~~~~h~~~i~~~~~s~----~~~~l~~ 244 (491)
++...++.+..||.+......... .......... ..++- ........-...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888899988887766411 1110000000 00000 00000111123455556655 6779999
Q ss_pred EeCCCeEEEEECCCCeeeEEE
Q 011179 245 GSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~ 265 (491)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
No 491
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.88 E-value=6.8 Score=36.85 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=93.4
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEE-EEEEcCCCCEEEEEeCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSD 248 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~l~~~~~d 248 (491)
..|..+-..|||+.|..-+. .++.++++.+...... ++.+...+ +..| .|+ .+..-..|.-+++++.|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~~~~--~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------DSRH--QVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------chHH--HHHHHHHHHhCceeEEEEcCC
Confidence 36778889999998877654 7888998876544322 22111111 0001 122 22223356678889999
Q ss_pred CeEEEE-ECCCCee-----eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 249 DCIYVY-DLEANKL-----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 249 g~i~vw-d~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
|.|.-| |...+.. ++.++-...++..+.- ..+.+-+++-+..|++.++... ..+.+ .+..-...+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCccee
Confidence 988877 4433221 1111111233333332 1334567777888888887653 22222 222223456678
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
++||++.++++- ..|.++++.+.+...
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999998875 446799998887543
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.68 E-value=27 Score=30.77 Aligned_cols=191 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC---------CCeEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVH 194 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~i~ 194 (491)
...-..+..-|||..-++-+.. -|.-.|-++.+...-.+.............|.+.|.+-+++.. .+.|+
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 3344567778888766654433 3444455554333222233333456788899999998887652 13455
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc---CCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH---TSD 271 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h---~~~ 271 (491)
+|+.-.|. ..+.|+..|||..-++.-.+..|-..|..++.. ..+... ...
T Consensus 182 vfpaPqG~--------------------------gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~g 234 (353)
T COG4257 182 VFPAPQGG--------------------------GPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAG 234 (353)
T ss_pred eeccCCCC--------------------------CCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccc
Confidence 55543221 456788899998777766667777777666532 222211 112
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc-eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
... .|+++.++.-++-...+.+..+|.. ... ....+.+....-.++.+...++.-.+--..|.|.-+|-++
T Consensus 235 sRr-iwsdpig~~wittwg~g~l~rfdPs----~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 235 SRR-IWSDPIGRAWITTWGTGSLHRFDPS----VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccc-cccCccCcEEEeccCCceeeEeCcc----cccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 222 3445777777777777788888764 111 1123333334445566666666555444556666666655
No 493
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=23 Score=29.77 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=82.3
Q ss_pred CCCEEEEEEc--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE-EEECCCeEEEEECCCCcccccccccc
Q 011179 135 DGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTE 211 (491)
Q Consensus 135 dg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~ 211 (491)
+|.++.+.+. ...|++||+.+|+.+....... . .+..=-...-+.++. ..-.+|.-.++|.++-+.........
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~--~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D--TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-c--cccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 4455555543 4579999999986655443331 0 111111111122222 23356777788877655443332211
Q ss_pred ccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe----c-cCCCeeEEEEecCCCCEEE
Q 011179 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL----A-HTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~l~ 286 (491)
.=..+ ..|++.|+.++...+++.-|.++.....++. + .-..++.+.|- +|.+.|
T Consensus 132 -----------------eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyA 190 (262)
T COG3823 132 -----------------EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYA 190 (262)
T ss_pred -----------------cceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEE
Confidence 22223 3456667777666677777766544333222 1 11233444552 344444
Q ss_pred EEeCCCeEEEEecccccCCCceee------------EeccccCcEEEEEEcCCC-CEEEEe
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAG------------VLMGHLEGITFIDSRGDG-RYLISN 334 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~-~~l~s~ 334 (491)
-.-.+..|..-|.. +++.+. .-..|..-.+.+++.|++ +++++|
T Consensus 191 NVw~t~~I~rI~p~----sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 191 NVWQTTRIARIDPD----SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeeecceEEEcCC----CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333333332 222111 112344567788999887 455554
No 494
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.31 E-value=29 Score=30.66 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=117.4
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
.+.-+.++-+|||..-.++...+.|--.|-.+|+...-.+.. ......+..-|||..-++-+.. -|.-.|-++.+.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~---Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS---GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC---CCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 345577899999998888888888888888888544333222 2245677888998766654333 455555555554
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
....-..+. -........|.+.|+.-+++.. .+.|++|+... ......
T Consensus 137 t~f~lp~~~-------------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyG 193 (353)
T COG4257 137 TRFPLPLEH-------------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYG 193 (353)
T ss_pred EEeeccccc-------------CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcc
Confidence 332221111 1125677889999987777652 12344444332 234466
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
|+.. +++..-++.-.+..|-..|.... ..+.+..-......-..+-.+|.|+.-++-...+.+..+|...
T Consensus 194 i~at-pdGsvwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 194 ICAT-PDGSVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eEEC-CCCcEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7776 78888777777777777776421 1111111112123345566677888888877777888877654
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.01 E-value=36 Score=30.81 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=34.6
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCc---EEEee-cc-C-CCCeeeeEecC--CCCeEEEE
Q 011179 405 VYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAAL-KY-H-TSPVRDCSWHP--SQPMLVSS 458 (491)
Q Consensus 405 ~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~-h-~~~v~~~~~sp--~~~~l~s~ 458 (491)
+++++|.++++--..+.|..|+..+.- ....+ +. . -..+.++.+.+ +|.+.+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 456688888888889999999987511 12222 11 1 34678899988 77755554
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.92 E-value=35 Score=30.66 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE------CCCeEEEEECCCCccccccccccccccccc
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDF 218 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-..|++||..+.+ ... ...+..+.|+++.|..+.+.++.|. ....+..||+.+...........
T Consensus 15 C~~lC~yd~~~~q-W~~--~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s------- 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSS--PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS------- 84 (281)
T ss_pred CCEEEEEECCCCE-eec--CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc-------
Confidence 3469999988762 222 2334677999999997777666664 34578899998876644332110
Q ss_pred cccCCCCceecEEEEEEcC-CCC-EEEEEe-CC--CeEEEEECCCCeeeEE-EeccCCCeeEEEEe
Q 011179 219 SAADDGGYSFGIFSLKFST-DGR-ELVAGS-SD--DCIYVYDLEANKLSLR-ILAHTSDVNTVCFG 278 (491)
Q Consensus 219 ~~~~~~~h~~~i~~~~~s~-~~~-~l~~~~-~d--g~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~ 278 (491)
..-.++|..+.+.. |+. ..+.|. .+ ..|..||=.+-..+.. .......|..+.+.
T Consensus 85 -----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 -----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred -----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 00122677777643 333 333433 23 3466665444333322 22223456666554
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.30 E-value=4 Score=22.35 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=21.5
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEee
Q 011179 411 KYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
..+++++.+|.++.+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999887653
No 498
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.07 E-value=65 Score=33.14 Aligned_cols=298 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCccccC-CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCc---eeEEE
Q 011179 99 FSAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR---WTVTD 174 (491)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~v~~ 174 (491)
+...+-.....+..|-..++.+-| -.+.|-+.+||.|.+.++....+..|.+++-.-. .+.......... +.-..
T Consensus 86 ~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd-~ise~~L~~~dl~ef~khi~ 164 (1243)
T COG5290 86 IDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFD-PISEYHLKKSDLVEFGKHIR 164 (1243)
T ss_pred ecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccc-ccchhhcchhHHHHhccceE
Q ss_pred EEEC------------------------CCCCeEEEEECCCeEEEE--ECCCCccccccccccccccccccccCCCCcee
Q 011179 175 TSLS------------------------PDQRHLVYASMSPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (491)
Q Consensus 175 ~~~s------------------------p~~~~l~~~~~d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 228 (491)
+.|. ..|+..+.-+ ...+..| |.+-.........+...-
T Consensus 165 VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~-~k~~i~wrgD~~y~~v~r~Ee~prra~-------------- 229 (1243)
T COG5290 165 VGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDT-NKKIIFWRGDTEYNLVGRSEERPRRAF-------------- 229 (1243)
T ss_pred eeecccchhccccchhhhccCCCCcccccccceeEeeC-CceEEEEccCcceeeecchhcccccce--------------
Q ss_pred cEEE------------------EEEcCCCCEEEEEeCCCe-----EEEEECCC---CeeeEEEeccCCCeeEEEEecCCC
Q 011179 229 GIFS------------------LKFSTDGRELVAGSSDDC-----IYVYDLEA---NKLSLRILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 229 ~i~~------------------~~~s~~~~~l~~~~~dg~-----i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~ 282 (491)
.|.+ +.|-|+|..+++-..||. |..+.-+. |+.-.+. +-...+..++| .-.
T Consensus 230 rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~w--n~~ 306 (1243)
T COG5290 230 RVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENW--NLL 306 (1243)
T ss_pred eeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-Cchhhhhhhhh--hHH
Q ss_pred CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccce
Q 011179 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (491)
Q Consensus 283 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (491)
..+......+.+++|-.. +-..-....-.-..+.-+.|+|....-+.-...+.|...++.-
T Consensus 307 s~vlav~~~n~~~lwttk----NyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~--------------- 367 (1243)
T COG5290 307 STVLAVAEGNLLKLWTTK----NYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSE--------------- 367 (1243)
T ss_pred HHHHHHhhcceEEEEEcc----ceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeeh---------------
Q ss_pred eeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCC
Q 011179 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442 (491)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (491)
.........+......... ||+++...- +.+-++...-....+. ....
T Consensus 368 --------------------k~~~~~s~~p~d~g~~~Vi-------DGs~~l~Tp----lsl~n~PPPm~~~~~~-~d~N 415 (1243)
T COG5290 368 --------------------KKTHHGSEYPFDNGTSYVI-------DGSYMLYTP----LSLKNLPPPMFSVRVG-FDTN 415 (1243)
T ss_pred --------------------hhhcCCcccCccCCceEEE-------cCceEEecc----hhhhcCCCCeEEEEec-CCCc
Q ss_pred eeeeEecCCCCeEEEEeCCCcEEE
Q 011179 443 VRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 443 v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
|..+..+-.....+....|..+.+
T Consensus 416 V~dv~~s~~~~~~aa~~~drli~f 439 (1243)
T COG5290 416 VVDVFPSFAEKKGAALLRDRLIMF 439 (1243)
T ss_pred eeeeccchhhhhHhhhccceeEEE
No 499
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.18 E-value=63 Score=32.37 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=85.6
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC-Cccccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESL 206 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~-~~~~~~ 206 (491)
..++.|++|..+|....++.++++..... ..... .. ..++.-.|.+++ .+-+.-.....++..... +....+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~~--~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD--AVLLD--TR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc--ceeec--cC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe
Confidence 68899999999988877888888876632 11111 11 136667788877 555554433444444322 322111
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECC--CC--eee----EEEeccCCCeeEE
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--AN--KLS----LRILAHTSDVNTV 275 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~--~~--~~~----~~~~~h~~~v~~~ 275 (491)
..... -...|..+..|+||-.++.-.. .+.|+|--+. .+ ..+ ..+......+.++
T Consensus 410 -~v~~~-------------~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl 475 (557)
T PRK13615 410 -AVSWT-------------ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDA 475 (557)
T ss_pred -ecccc-------------CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceee
Confidence 11110 1137999999999988776543 3556654332 22 112 1122223488999
Q ss_pred EEecCCCCEEEEEe---CCCeEEEEecc
Q 011179 276 CFGDESGHLIYSGS---DDNLCKVWDRR 300 (491)
Q Consensus 276 ~~~~~~~~~l~s~~---~dg~i~iwd~~ 300 (491)
.|. .++.+++.+. .+..+++..+.
T Consensus 476 ~W~-~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 476 TWV-DELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEc-CCCEEEEEeccCCCCceEEEEECC
Confidence 997 6666655542 23456666654
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.11 E-value=7.1 Score=36.73 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=92.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCc---eeEE-EEEECCCCCeEEEEECCCeEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR---WTVT-DTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~v~-~~~~sp~~~~l~~~~~d~~i~ 194 (491)
.+....+.|..+-..|||+.|..-+. ..+.|+++.+...-.+........ ..|+ .+..-..|.-|++++.||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 35566778888999999998877654 688999987642211111111111 1122 222233456688888899887
Q ss_pred EE-ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 195 IV-DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 195 iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
-| |+..+.......+.. ..+. ..++..+.-..+.+-+++-+.+|++.++.....+.+..-.. -..+.
T Consensus 294 QWFdvr~~~~p~l~h~R~----f~l~-------pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~ 361 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRN----FKLA-------PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQ 361 (733)
T ss_pred eeeeeecCCCCcceeeec----cccC-------cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcc
Confidence 77 443322211111110 0000 01233333333445677777888888877655544332222 23567
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
.++++ +.+.++++- +.|.++++.++
T Consensus 362 ~~~~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 362 LVAMS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred eeeeC-cccchheee-cCCceEEEEec
Confidence 78887 667776553 46789999886
Done!