Query 011179
Match_columns 491
No_of_seqs 908 out of 3446
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 22:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.8E-48 6.1E-53 372.8 40.6 290 117-470 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 6.6E-48 2.2E-52 356.1 40.5 290 119-470 27-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.2E-47 7.6E-52 356.1 43.0 295 115-468 46-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 3.4E-47 1.1E-51 356.6 42.7 299 115-468 55-354 (354)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.9E-47 2.7E-51 353.0 39.0 314 118-475 9-339 (345)
6 3iz6_a 40S ribosomal protein R 100.0 1.1E-47 3.6E-52 363.9 31.2 308 117-473 59-377 (380)
7 2ynn_A Coatomer subunit beta'; 100.0 5.8E-46 2E-50 340.9 40.6 293 116-472 5-303 (304)
8 4g56_B MGC81050 protein; prote 100.0 1.1E-46 3.7E-51 353.4 33.6 299 121-477 39-349 (357)
9 4gqb_B Methylosome protein 50; 100.0 1.5E-46 5.2E-51 349.5 33.0 295 121-475 27-335 (344)
10 4ery_A WD repeat-containing pr 100.0 4.9E-45 1.7E-49 336.4 41.3 293 117-470 16-311 (312)
11 3frx_A Guanine nucleotide-bind 100.0 1.7E-44 6E-49 333.3 41.3 291 118-471 11-317 (319)
12 1nr0_A Actin interacting prote 100.0 2.4E-44 8.3E-49 361.9 43.5 352 106-474 41-570 (611)
13 1erj_A Transcriptional repress 100.0 2.7E-44 9.4E-49 342.1 39.7 301 122-472 62-390 (393)
14 2xzm_R RACK1; ribosome, transl 100.0 1.5E-43 5E-48 330.8 38.6 292 117-472 14-341 (343)
15 2hes_X YDR267CP; beta-propelle 100.0 1.6E-43 5.6E-48 328.4 38.1 307 117-471 7-328 (330)
16 4aow_A Guanine nucleotide-bind 100.0 1.2E-41 4.1E-46 317.7 40.8 294 118-473 32-339 (340)
17 2ymu_A WD-40 repeat protein; u 100.0 6.1E-42 2.1E-46 343.4 41.1 283 116-468 295-577 (577)
18 1nr0_A Actin interacting prote 100.0 3.2E-42 1.1E-46 346.5 37.4 326 122-473 16-357 (611)
19 4e54_B DNA damage-binding prot 100.0 4.8E-43 1.6E-47 338.2 29.0 304 118-473 113-432 (435)
20 3zwl_B Eukaryotic translation 100.0 3.3E-41 1.1E-45 318.3 40.7 291 117-473 25-348 (369)
21 3ei3_B DNA damage-binding prot 100.0 4.1E-42 1.4E-46 326.5 34.1 311 117-471 66-382 (383)
22 1gxr_A ESG1, transducin-like e 100.0 3.9E-41 1.3E-45 313.8 38.5 288 119-469 46-335 (337)
23 2ynn_A Coatomer subunit beta'; 100.0 9.3E-41 3.2E-45 306.2 36.1 251 166-474 10-262 (304)
24 2ymu_A WD-40 repeat protein; u 100.0 2.1E-40 7.3E-45 332.2 41.9 287 115-471 253-539 (577)
25 3dm0_A Maltose-binding peripla 100.0 6.1E-41 2.1E-45 342.7 37.8 291 118-470 376-692 (694)
26 1sq9_A Antiviral protein SKI8; 100.0 5.5E-41 1.9E-45 320.3 33.2 293 118-472 10-396 (397)
27 3odt_A Protein DOA1; ubiquitin 100.0 8.8E-40 3E-44 301.3 39.7 293 117-479 11-304 (313)
28 1k8k_C P40, ARP2/3 complex 41 100.0 9.1E-41 3.1E-45 315.8 33.5 298 119-473 3-363 (372)
29 4a11_B DNA excision repair pro 100.0 7E-41 2.4E-45 320.6 32.9 317 108-476 27-370 (408)
30 3k26_A Polycomb protein EED; W 100.0 9.7E-41 3.3E-45 314.8 33.2 302 120-470 14-365 (366)
31 1r5m_A SIR4-interacting protei 100.0 7.2E-40 2.5E-44 315.2 39.4 288 121-471 42-425 (425)
32 4gga_A P55CDC, cell division c 100.0 2.4E-39 8.1E-44 311.0 42.3 302 110-474 87-398 (420)
33 1vyh_C Platelet-activating fac 100.0 4.4E-40 1.5E-44 314.6 35.2 252 166-474 105-372 (410)
34 3gre_A Serine/threonine-protei 100.0 3.3E-41 1.1E-45 326.1 27.4 324 118-468 56-437 (437)
35 4h5i_A Guanine nucleotide-exch 100.0 1.3E-40 4.5E-45 312.9 29.5 306 124-481 14-353 (365)
36 2pm9_A Protein WEB1, protein t 100.0 7.4E-41 2.5E-45 321.5 28.3 299 121-472 64-415 (416)
37 3i2n_A WD repeat-containing pr 100.0 2.7E-40 9.4E-45 310.6 30.4 297 119-473 13-355 (357)
38 4ggc_A P55CDC, cell division c 100.0 2.3E-38 7.8E-43 292.6 42.8 301 110-473 7-317 (318)
39 4aez_A CDC20, WD repeat-contai 100.0 2.1E-39 7E-44 309.6 36.5 303 110-478 75-387 (401)
40 3ow8_A WD repeat-containing pr 100.0 2.3E-39 7.7E-44 299.0 35.1 251 164-473 27-281 (321)
41 2pm9_A Protein WEB1, protein t 100.0 1.5E-40 5.3E-45 319.2 25.1 297 124-476 12-342 (416)
42 4gqb_B Methylosome protein 50; 100.0 3.7E-39 1.3E-43 299.7 33.3 250 121-432 79-334 (344)
43 1gxr_A ESG1, transducin-like e 100.0 5.1E-39 1.7E-43 299.4 33.9 291 123-475 8-300 (337)
44 3dwl_C Actin-related protein 2 100.0 1.1E-40 3.8E-45 315.9 21.8 297 119-469 6-377 (377)
45 3vl1_A 26S proteasome regulato 100.0 2.3E-38 7.8E-43 304.6 36.3 299 109-471 83-419 (420)
46 2pm7_B Protein transport prote 100.0 2.1E-38 7E-43 289.6 34.2 262 119-472 4-286 (297)
47 2j04_B YDR362CP, TAU91; beta p 100.0 2E-39 7E-44 316.3 27.1 299 123-472 132-518 (524)
48 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-38 1.8E-42 342.0 41.3 336 117-476 608-1039(1249)
49 4g56_B MGC81050 protein; prote 100.0 5.1E-39 1.8E-43 301.2 28.3 283 128-474 9-304 (357)
50 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-38 6.7E-43 330.3 35.1 203 121-350 14-245 (902)
51 3vl1_A 26S proteasome regulato 100.0 4.1E-39 1.4E-43 309.8 27.3 284 126-475 58-369 (420)
52 3mkq_A Coatomer beta'-subunit; 100.0 6.2E-38 2.1E-42 327.1 38.3 294 117-473 6-304 (814)
53 1got_B GT-beta; complex (GTP-b 100.0 1.9E-37 6.6E-42 288.9 37.5 248 164-473 50-303 (340)
54 3dw8_B Serine/threonine-protei 100.0 3.5E-38 1.2E-42 305.8 33.1 310 122-469 26-444 (447)
55 1pgu_A Actin interacting prote 100.0 1.6E-37 5.6E-42 313.6 38.5 334 115-473 54-574 (615)
56 3f3f_A Nucleoporin SEH1; struc 100.0 2.8E-38 9.6E-43 295.6 30.0 313 117-474 4-340 (351)
57 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-37 3.7E-42 291.1 33.1 258 164-474 10-286 (345)
58 1yfq_A Cell cycle arrest prote 100.0 4.3E-38 1.5E-42 293.9 30.3 296 120-469 7-322 (342)
59 3v7d_B Cell division control p 100.0 1.3E-36 4.5E-41 296.2 41.0 286 118-476 115-426 (464)
60 1p22_A F-BOX/WD-repeat protein 100.0 3.3E-37 1.1E-41 297.6 35.7 284 121-482 130-425 (435)
61 3mmy_A MRNA export factor; mRN 100.0 3.3E-37 1.1E-41 290.7 33.7 306 111-473 26-348 (368)
62 3frx_A Guanine nucleotide-bind 100.0 1.6E-36 5.3E-41 280.1 36.5 255 159-472 7-268 (319)
63 1erj_A Transcriptional repress 100.0 1.2E-36 4E-41 289.4 36.3 251 124-429 123-389 (393)
64 4ery_A WD repeat-containing pr 100.0 1.7E-36 5.7E-41 279.3 35.9 251 164-474 18-271 (312)
65 3bg1_A Protein SEC13 homolog; 100.0 5.2E-38 1.8E-42 289.5 25.1 259 119-471 8-293 (316)
66 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.8E-36 2.7E-40 289.0 40.3 283 116-475 110-395 (445)
67 2pbi_B Guanine nucleotide-bind 100.0 3.5E-36 1.2E-40 281.7 36.6 248 165-473 60-317 (354)
68 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-37 1.5E-41 334.9 34.7 362 106-476 681-1163(1249)
69 2hes_X YDR267CP; beta-propelle 100.0 1.5E-36 5.2E-41 281.6 32.9 254 165-472 10-281 (330)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.4E-36 3.2E-40 288.4 39.4 294 106-473 141-444 (445)
71 1pgu_A Actin interacting prote 100.0 2.3E-36 7.8E-41 305.2 36.0 308 108-471 187-614 (615)
72 3iz6_a 40S ribosomal protein R 100.0 3.3E-37 1.1E-41 291.8 27.3 251 164-473 61-331 (380)
73 3v7d_B Cell division control p 100.0 1.4E-35 4.8E-40 288.9 38.0 308 105-468 143-460 (464)
74 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-35 4.3E-40 309.3 39.4 208 122-345 56-310 (902)
75 2xzm_R RACK1; ribosome, transl 100.0 5.4E-35 1.9E-39 272.8 37.6 254 163-474 15-288 (343)
76 3jrp_A Fusion protein of prote 100.0 1E-35 3.4E-40 281.8 32.6 263 117-471 4-287 (379)
77 3mkq_A Coatomer beta'-subunit; 100.0 6.9E-36 2.4E-40 311.7 33.3 221 108-351 39-263 (814)
78 3gre_A Serine/threonine-protei 100.0 3.6E-36 1.2E-40 290.8 25.7 284 131-475 34-363 (437)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-34 3.9E-39 281.1 34.8 311 124-472 4-392 (450)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 8.5E-36 2.9E-40 284.8 25.6 293 126-472 36-343 (402)
81 2xyi_A Probable histone-bindin 100.0 1.3E-34 4.3E-39 278.9 30.0 261 166-472 125-411 (430)
82 2j04_A TAU60, YPL007P, hypothe 100.0 2E-35 7E-40 280.7 23.1 269 122-470 13-296 (588)
83 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-34 1.3E-38 268.0 31.4 288 118-477 13-342 (355)
84 2j04_B YDR362CP, TAU91; beta p 100.0 7.9E-35 2.7E-39 284.0 25.6 282 120-428 203-516 (524)
85 3dm0_A Maltose-binding peripla 100.0 1E-33 3.5E-38 289.3 34.4 267 118-428 424-692 (694)
86 3jro_A Fusion protein of prote 100.0 4.1E-34 1.4E-38 293.9 30.3 264 118-473 3-287 (753)
87 3dwl_C Actin-related protein 2 100.0 2E-35 7E-40 279.7 18.0 263 169-471 11-281 (377)
88 1k8k_C P40, ARP2/3 complex 41 100.0 7.9E-34 2.7E-38 268.2 28.7 267 167-471 6-274 (372)
89 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-34 6.4E-39 269.2 24.1 283 130-471 42-333 (343)
90 1sq9_A Antiviral protein SKI8; 100.0 7.4E-34 2.5E-38 270.9 28.5 266 116-431 54-397 (397)
91 4aez_A CDC20, WD repeat-contai 100.0 3.6E-33 1.2E-37 266.4 33.2 250 123-436 133-387 (401)
92 4aow_A Guanine nucleotide-bind 100.0 1.8E-32 6.3E-37 255.5 36.6 267 148-472 18-287 (340)
93 1r5m_A SIR4-interacting protei 100.0 4.4E-33 1.5E-37 267.8 32.9 300 147-473 26-363 (425)
94 3zwl_B Eukaryotic translation 100.0 9.8E-33 3.4E-37 260.2 33.7 274 106-434 56-351 (369)
95 4gq1_A NUP37; propeller, trans 100.0 1.7E-33 5.7E-38 267.5 28.1 262 177-470 97-388 (393)
96 3k26_A Polycomb protein EED; W 100.0 2.2E-33 7.5E-38 264.4 26.7 254 122-428 67-365 (366)
97 3dw8_B Serine/threonine-protei 100.0 3.1E-33 1E-37 271.0 27.8 267 167-474 26-376 (447)
98 3ei3_B DNA damage-binding prot 100.0 2.5E-32 8.4E-37 259.1 31.6 245 121-429 115-382 (383)
99 4gga_A P55CDC, cell division c 100.0 7.1E-32 2.4E-36 259.0 35.0 280 104-448 125-414 (420)
100 4e54_B DNA damage-binding prot 100.0 9.7E-33 3.3E-37 266.2 28.9 251 167-474 117-390 (435)
101 3odt_A Protein DOA1; ubiquitin 100.0 6.6E-32 2.3E-36 248.5 32.7 241 164-474 13-258 (313)
102 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.1E-37 258.5 28.1 250 166-475 15-295 (357)
103 1yfq_A Cell cycle arrest prote 100.0 1.7E-32 5.7E-37 256.0 28.9 254 164-474 6-285 (342)
104 2j04_A TAU60, YPL007P, hypothe 100.0 7.5E-34 2.6E-38 270.0 19.9 255 122-460 83-350 (588)
105 4h5i_A Guanine nucleotide-exch 100.0 3E-33 1E-37 262.7 23.7 251 119-430 68-344 (365)
106 2w18_A PALB2, fancn, partner a 100.0 1.1E-31 3.7E-36 239.7 31.4 281 126-469 41-355 (356)
107 3bws_A Protein LP49; two-domai 100.0 2.2E-31 7.7E-36 256.8 34.6 282 125-471 123-432 (433)
108 2pm7_B Protein transport prote 100.0 5.7E-32 1.9E-36 246.9 28.7 213 224-472 6-239 (297)
109 1l0q_A Surface layer protein; 100.0 3.3E-30 1.1E-34 245.1 38.0 267 137-473 3-277 (391)
110 2xyi_A Probable histone-bindin 100.0 1.4E-31 4.8E-36 257.6 27.0 273 119-430 123-411 (430)
111 4a11_B DNA excision repair pro 100.0 1.8E-30 6.1E-35 248.2 33.2 283 121-471 96-405 (408)
112 1p22_A F-BOX/WD-repeat protein 100.0 2E-30 6.9E-35 250.1 33.7 238 166-473 130-367 (435)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 7E-31 2.4E-35 250.7 29.3 246 172-473 37-301 (402)
114 1l0q_A Surface layer protein; 100.0 1.8E-29 6.2E-34 240.1 37.5 285 119-473 27-344 (391)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2E-30 6.7E-35 251.3 29.5 256 171-469 6-337 (450)
116 3mmy_A MRNA export factor; mRN 100.0 1E-29 3.5E-34 239.4 32.4 253 164-474 34-307 (368)
117 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-29 4.1E-34 237.4 29.9 263 150-473 3-273 (355)
118 4ggc_A P55CDC, cell division c 100.0 5.2E-29 1.8E-33 229.8 33.8 248 119-431 62-317 (318)
119 3bg1_A Protein SEC13 homolog; 100.0 6.2E-31 2.1E-35 242.2 20.3 216 118-347 51-293 (316)
120 3lrv_A PRE-mRNA-splicing facto 100.0 3.1E-30 1.1E-34 240.6 22.8 234 175-474 42-295 (343)
121 4gq1_A NUP37; propeller, trans 100.0 4.7E-30 1.6E-34 243.7 21.6 247 120-427 85-387 (393)
122 3jrp_A Fusion protein of prote 100.0 7.8E-29 2.7E-33 234.4 27.2 207 225-473 9-242 (379)
123 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-28 6.5E-33 228.7 27.8 228 118-349 51-339 (351)
124 3bws_A Protein LP49; two-domai 100.0 1E-27 3.5E-32 231.2 33.4 287 124-473 60-392 (433)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.2E-28 1.4E-32 231.6 26.8 283 124-474 62-390 (415)
126 3jro_A Fusion protein of prote 100.0 1.4E-28 4.8E-33 252.8 24.8 216 117-348 46-286 (753)
127 1nir_A Nitrite reductase; hemo 100.0 3.1E-27 1E-31 232.4 32.2 283 131-475 144-462 (543)
128 2w18_A PALB2, fancn, partner a 100.0 2.1E-27 7.1E-32 212.2 25.5 187 179-427 143-355 (356)
129 2ecf_A Dipeptidyl peptidase IV 100.0 1.1E-26 3.7E-31 239.6 29.6 285 124-471 36-413 (741)
130 1nir_A Nitrite reductase; hemo 100.0 3.1E-25 1.1E-29 218.2 35.3 299 127-475 181-518 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.5E-25 5.2E-30 213.9 30.8 264 119-453 112-410 (415)
132 3u4y_A Uncharacterized protein 99.9 2.8E-24 9.7E-29 199.2 35.3 284 130-473 3-306 (331)
133 3vgz_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 200.5 35.8 281 123-462 39-335 (353)
134 1ri6_A Putative isomerase YBHE 99.9 6E-25 2E-29 204.7 28.5 281 138-470 7-307 (343)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-26 8.1E-31 236.5 20.5 289 125-473 17-395 (723)
136 2ojh_A Uncharacterized protein 99.9 5E-25 1.7E-29 200.6 26.6 257 141-462 17-293 (297)
137 1k32_A Tricorn protease; prote 99.9 3.1E-24 1.1E-28 228.7 31.6 304 115-473 43-463 (1045)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6.3E-24 2.1E-28 217.7 29.2 293 125-473 82-437 (706)
139 1pby_B Quinohemoprotein amine 99.9 3.5E-23 1.2E-27 192.2 29.5 275 137-474 2-313 (337)
140 3o4h_A Acylamino-acid-releasin 99.9 1.5E-23 5.1E-28 209.8 28.9 276 124-471 21-315 (582)
141 1k32_A Tricorn protease; prote 99.9 5.6E-23 1.9E-27 219.1 31.8 304 123-473 294-639 (1045)
142 3hfq_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 190.7 28.6 277 145-470 15-316 (347)
143 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-23 4.5E-28 216.6 24.4 293 126-472 110-460 (741)
144 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-23 6.5E-28 214.8 25.4 290 118-459 51-428 (723)
145 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-23 8.2E-28 213.4 24.8 283 127-473 28-393 (706)
146 1ri6_A Putative isomerase YBHE 99.9 3.6E-22 1.2E-26 185.8 30.6 277 122-453 35-335 (343)
147 3pe7_A Oligogalacturonate lyas 99.9 2.2E-22 7.4E-27 190.9 26.1 291 119-471 25-382 (388)
148 2ojh_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 181.4 25.7 240 118-420 35-293 (297)
149 1jmx_B Amine dehydrogenase; ox 99.9 6.4E-22 2.2E-26 184.7 26.9 282 129-473 4-327 (349)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 3E-21 1E-25 184.7 29.6 213 124-348 36-279 (434)
151 3u4y_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 178.0 29.0 272 121-452 37-326 (331)
152 1z68_A Fibroblast activation p 99.9 8E-23 2.7E-27 209.9 18.2 283 129-471 20-391 (719)
153 3scy_A Hypothetical bacterial 99.9 9.9E-21 3.4E-25 177.6 30.6 280 135-470 12-336 (361)
154 3vgz_A Uncharacterized protein 99.9 8.1E-21 2.8E-25 177.5 29.8 243 171-473 42-305 (353)
155 3scy_A Hypothetical bacterial 99.9 1.4E-19 4.8E-24 169.8 36.0 281 123-449 48-360 (361)
156 3hfq_A Uncharacterized protein 99.9 1.6E-20 5.5E-25 175.1 28.6 267 122-433 37-323 (347)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.9E-20 6.5E-25 175.8 27.9 286 138-472 4-342 (365)
158 1pby_B Quinohemoprotein amine 99.9 1E-20 3.5E-25 175.5 25.8 247 126-440 35-321 (337)
159 3o4h_A Acylamino-acid-releasin 99.9 2.6E-21 8.7E-26 193.6 21.4 233 169-469 21-274 (582)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 8.5E-21 2.9E-25 181.6 21.9 185 146-346 23-222 (434)
161 1z68_A Fibroblast activation p 99.9 3.3E-21 1.1E-25 197.9 18.7 289 126-473 61-445 (719)
162 3c5m_A Oligogalacturonate lyas 99.9 1.5E-20 5.1E-25 178.7 20.8 291 126-470 37-381 (396)
163 4a5s_A Dipeptidyl peptidase 4 99.9 5.1E-20 1.7E-24 189.2 24.4 279 125-473 17-355 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 9.4E-19 3.2E-23 163.4 24.2 282 135-472 14-335 (361)
165 1jmx_B Amine dehydrogenase; ox 99.8 3.8E-18 1.3E-22 159.0 26.3 240 126-439 44-335 (349)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-17 3.6E-22 157.0 29.1 249 125-430 40-342 (365)
167 3fvz_A Peptidyl-glycine alpha- 99.8 8.8E-18 3E-22 155.1 26.9 246 170-473 24-324 (329)
168 2gop_A Trilobed protease; beta 99.8 2.3E-17 7.8E-22 153.7 29.4 259 125-470 15-330 (347)
169 2oiz_A Aromatic amine dehydrog 99.8 6E-18 2.1E-22 158.0 25.2 260 129-453 54-360 (361)
170 3azo_A Aminopeptidase; POP fam 99.8 2.4E-18 8.2E-23 174.9 24.4 299 118-472 17-370 (662)
171 1q7f_A NHL, brain tumor CG1071 99.8 1.1E-16 3.8E-21 144.7 31.4 246 168-472 28-281 (286)
172 1q7f_A NHL, brain tumor CG1071 99.8 1.6E-16 5.4E-21 143.7 31.8 246 121-430 26-281 (286)
173 2dg1_A DRP35, lactonase; beta 99.8 3.1E-17 1.1E-21 151.9 26.6 285 125-471 6-316 (333)
174 3azo_A Aminopeptidase; POP fam 99.8 4.8E-17 1.7E-21 165.3 28.7 281 129-470 81-410 (662)
175 4a5s_A Dipeptidyl peptidase 4 99.8 3.6E-17 1.2E-21 168.0 27.8 286 128-472 65-450 (740)
176 3pe7_A Oligogalacturonate lyas 99.8 4.4E-17 1.5E-21 154.2 25.1 261 150-473 14-331 (388)
177 2xdw_A Prolyl endopeptidase; a 99.8 2E-16 6.7E-21 161.8 31.5 284 134-473 81-416 (710)
178 3fvz_A Peptidyl-glycine alpha- 99.8 8.2E-16 2.8E-20 141.9 30.0 255 123-428 22-321 (329)
179 1qks_A Cytochrome CD1 nitrite 99.7 5.9E-15 2E-19 144.6 34.8 278 134-472 165-478 (567)
180 2bkl_A Prolyl endopeptidase; m 99.7 2.9E-16 1E-20 160.0 26.2 279 134-473 77-399 (695)
181 2z2n_A Virginiamycin B lyase; 99.7 3.6E-14 1.2E-18 128.9 37.4 281 122-471 12-295 (299)
182 2xdw_A Prolyl endopeptidase; a 99.7 1.1E-15 3.9E-20 156.2 30.4 248 122-431 122-416 (710)
183 3e5z_A Putative gluconolactona 99.7 9E-15 3.1E-19 132.8 28.8 248 118-432 21-289 (296)
184 2bkl_A Prolyl endopeptidase; m 99.7 1.3E-15 4.3E-20 155.4 24.2 250 122-432 118-400 (695)
185 2mad_H Methylamine dehydrogena 99.7 6.7E-14 2.3E-18 130.6 33.6 293 131-477 27-356 (373)
186 3c5m_A Oligogalacturonate lyas 99.7 3.9E-16 1.3E-20 148.1 18.7 261 149-473 13-331 (396)
187 1qks_A Cytochrome CD1 nitrite 99.7 4.2E-13 1.4E-17 131.6 37.9 300 125-474 197-541 (567)
188 3e5z_A Putative gluconolactona 99.7 1.5E-14 5.2E-19 131.3 26.0 235 171-471 29-286 (296)
189 2qc5_A Streptogramin B lactona 99.7 6.5E-13 2.2E-17 120.6 36.5 278 123-469 18-298 (300)
190 1rwi_B Serine/threonine-protei 99.7 1E-14 3.5E-19 130.5 23.9 241 171-474 25-267 (270)
191 2gop_A Trilobed protease; beta 99.7 8.1E-15 2.8E-19 136.4 24.1 218 171-470 16-290 (347)
192 3dsm_A Uncharacterized protein 99.7 2.1E-14 7.1E-19 132.2 25.9 260 144-470 15-301 (328)
193 3no2_A Uncharacterized protein 99.7 6E-14 2.1E-18 125.3 27.4 186 135-348 4-196 (276)
194 3no2_A Uncharacterized protein 99.7 2.2E-14 7.4E-19 128.2 24.5 213 180-458 4-230 (276)
195 3sjl_D Methylamine dehydrogena 99.7 8.9E-14 3E-18 127.8 28.4 291 130-474 38-366 (386)
196 2dg1_A DRP35, lactonase; beta 99.7 1.6E-13 5.3E-18 126.9 30.4 205 119-346 39-262 (333)
197 1yr2_A Prolyl oligopeptidase; 99.7 1.9E-14 6.4E-19 147.7 26.2 277 133-473 115-443 (741)
198 1rwi_B Serine/threonine-protei 99.7 5.6E-14 1.9E-18 125.7 24.9 241 126-431 25-266 (270)
199 3c75_H MADH, methylamine dehyd 99.6 1.1E-13 3.8E-18 129.6 25.5 290 134-475 82-406 (426)
200 1yr2_A Prolyl oligopeptidase; 99.6 9.2E-14 3.2E-18 142.6 26.4 202 123-346 161-392 (741)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6E-13 2E-17 121.8 26.1 248 171-473 19-301 (314)
202 2z2n_A Virginiamycin B lyase; 99.6 8.2E-12 2.8E-16 113.2 33.2 237 170-470 15-254 (299)
203 3sjl_D Methylamine dehydrogena 99.6 8.6E-13 2.9E-17 121.3 26.3 258 130-451 83-384 (386)
204 3dsm_A Uncharacterized protein 99.6 1.7E-12 5.8E-17 119.4 27.1 248 125-437 44-309 (328)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-11 3.8E-16 113.2 30.9 205 124-347 17-256 (314)
206 3iuj_A Prolyl endopeptidase; h 99.5 2.8E-12 9.5E-17 130.4 27.0 204 122-347 126-359 (693)
207 2mad_H Methylamine dehydrogena 99.5 6.5E-11 2.2E-15 110.3 33.9 242 129-436 70-357 (373)
208 3hrp_A Uncharacterized protein 99.5 4.8E-12 1.6E-16 119.7 26.6 201 124-347 130-354 (409)
209 3hrp_A Uncharacterized protein 99.5 2.6E-12 9E-17 121.6 23.9 239 171-469 132-408 (409)
210 3g4e_A Regucalcin; six bladed 99.5 1.1E-11 3.7E-16 112.3 26.7 229 171-459 14-260 (297)
211 2qc5_A Streptogramin B lactona 99.5 2.2E-10 7.4E-15 103.8 33.5 237 170-470 20-259 (300)
212 2qe8_A Uncharacterized protein 99.4 5.6E-12 1.9E-16 116.7 19.7 285 125-468 17-318 (343)
213 1mda_H Methylamine dehydrogena 99.4 6.9E-12 2.4E-16 115.6 19.7 270 147-475 47-350 (368)
214 1xip_A Nucleoporin NUP159; bet 99.4 2.5E-12 8.5E-17 118.8 16.5 174 126-334 39-231 (388)
215 1xip_A Nucleoporin NUP159; bet 99.4 3.6E-12 1.2E-16 117.7 17.1 171 229-457 39-230 (388)
216 3g4e_A Regucalcin; six bladed 99.4 2.1E-10 7.1E-15 103.9 27.8 198 126-347 14-229 (297)
217 3c75_H MADH, methylamine dehyd 99.4 8E-11 2.7E-15 110.3 25.4 244 129-436 122-409 (426)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-09 3.7E-14 100.5 32.0 226 172-459 51-290 (326)
219 3dr2_A Exported gluconolactona 99.4 6.2E-11 2.1E-15 107.8 23.3 227 171-465 46-301 (305)
220 3dr2_A Exported gluconolactona 99.4 1.7E-10 5.9E-15 104.8 26.0 205 118-347 38-267 (305)
221 3iuj_A Prolyl endopeptidase; h 99.4 5.2E-11 1.8E-15 121.0 24.0 242 168-473 127-407 (693)
222 2ghs_A AGR_C_1268P; regucalcin 99.4 1.5E-09 5.1E-14 99.6 29.9 197 127-346 51-259 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.5E-09 1.5E-13 98.6 31.8 268 135-474 52-340 (376)
224 1yiq_A Quinohemoprotein alcoho 99.3 4.3E-10 1.5E-14 113.6 23.2 313 136-475 70-509 (689)
225 1kb0_A Quinohemoprotein alcoho 99.3 8.1E-10 2.8E-14 111.3 24.5 310 136-475 77-511 (677)
226 2qe8_A Uncharacterized protein 99.3 7.9E-11 2.7E-15 109.0 15.7 231 171-469 18-276 (343)
227 2hz6_A Endoplasmic reticulum t 99.2 6.8E-12 2.3E-16 117.1 7.2 203 180-453 8-216 (369)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.7E-08 1.6E-12 91.6 33.3 262 135-468 102-375 (376)
229 1kb0_A Quinohemoprotein alcoho 99.2 2E-09 7E-14 108.4 25.1 326 135-471 127-567 (677)
230 1yiq_A Quinohemoprotein alcoho 99.2 1.5E-09 5E-14 109.7 23.8 309 135-458 120-536 (689)
231 2ece_A 462AA long hypothetical 99.2 1.3E-08 4.6E-13 94.2 27.8 234 179-459 93-399 (462)
232 1mda_H Methylamine dehydrogena 99.2 1.5E-10 5E-15 106.8 13.7 249 129-450 69-366 (368)
233 1fwx_A Nitrous oxide reductase 99.2 2.6E-09 9.1E-14 102.4 22.4 284 139-471 18-431 (595)
234 2ece_A 462AA long hypothetical 99.2 1.1E-08 3.9E-13 94.6 24.8 200 131-347 88-352 (462)
235 3hxj_A Pyrrolo-quinoline quino 99.2 3.8E-09 1.3E-13 97.0 21.9 301 127-473 22-326 (330)
236 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.4E-16 115.3 4.5 183 238-474 8-195 (369)
237 1fwx_A Nitrous oxide reductase 99.1 8.6E-08 2.9E-12 92.0 25.6 251 134-431 99-433 (595)
238 1npe_A Nidogen, entactin; glyc 99.0 1.8E-06 6E-11 76.5 31.5 251 136-453 1-263 (267)
239 2iwa_A Glutamine cyclotransfer 99.0 2.7E-07 9.2E-12 80.3 24.5 195 126-348 22-238 (266)
240 1k3i_A Galactose oxidase precu 99.0 1.9E-08 6.3E-13 101.6 19.4 274 129-460 190-530 (656)
241 1kv9_A Type II quinohemoprotei 99.0 4.6E-07 1.6E-11 91.2 29.0 311 136-475 66-492 (668)
242 2iwa_A Glutamine cyclotransfer 98.9 1.9E-07 6.6E-12 81.2 21.2 199 230-473 23-239 (266)
243 4a2l_A BT_4663, two-component 98.9 5.7E-06 1.9E-10 85.6 35.1 287 124-471 214-526 (795)
244 2fp8_A Strictosidine synthase; 98.9 2.4E-06 8.3E-11 77.9 27.7 203 126-346 20-268 (322)
245 1w6s_A Methanol dehydrogenase 98.9 9.2E-07 3.1E-11 87.1 26.1 199 136-353 62-348 (599)
246 2ad6_A Methanol dehydrogenase 98.9 6E-07 2E-11 88.5 24.8 311 136-475 62-498 (571)
247 1kv9_A Type II quinohemoprotei 98.9 5.3E-07 1.8E-11 90.8 24.3 166 136-309 117-337 (668)
248 4a2l_A BT_4663, two-component 98.9 1.7E-05 5.7E-10 82.1 35.8 282 124-471 262-571 (795)
249 3qqz_A Putative uncharacterize 98.8 5.4E-06 1.8E-10 71.7 26.5 210 119-344 21-250 (255)
250 3nol_A Glutamine cyclotransfer 98.8 9.2E-07 3.2E-11 75.9 21.1 181 126-336 44-244 (262)
251 2fp8_A Strictosidine synthase; 98.8 3.8E-06 1.3E-10 76.6 26.7 251 172-473 21-315 (322)
252 1w6s_A Methanol dehydrogenase 98.8 9.4E-06 3.2E-10 80.0 31.0 317 130-458 111-534 (599)
253 3nol_A Glutamine cyclotransfer 98.8 1.5E-06 5E-11 74.7 21.7 181 230-460 45-244 (262)
254 2ad6_A Methanol dehydrogenase 98.8 3E-06 1E-10 83.5 27.1 304 136-457 115-523 (571)
255 3nok_A Glutaminyl cyclase; bet 98.8 1.4E-06 4.9E-11 74.7 20.8 179 230-459 57-253 (268)
256 1npe_A Nidogen, entactin; glyc 98.8 1.5E-05 5E-10 70.5 28.1 233 182-473 2-240 (267)
257 1flg_A Protein (quinoprotein e 98.8 3.7E-05 1.3E-09 75.8 32.9 202 136-353 68-361 (582)
258 2p4o_A Hypothetical protein; p 98.7 1.4E-05 4.9E-10 72.2 27.1 228 171-462 33-279 (306)
259 3mbr_X Glutamine cyclotransfer 98.7 6.2E-06 2.1E-10 70.2 22.7 183 125-336 21-223 (243)
260 1flg_A Protein (quinoprotein e 98.7 2.6E-05 9E-10 76.9 30.5 170 136-311 117-361 (582)
261 2p4o_A Hypothetical protein; p 98.7 2.5E-05 8.4E-10 70.6 28.1 197 125-346 32-241 (306)
262 2xe4_A Oligopeptidase B; hydro 98.7 1.9E-06 6.4E-11 88.2 22.8 196 126-345 175-398 (751)
263 3v9f_A Two-component system se 98.7 5.8E-05 2E-09 77.8 34.1 290 124-471 210-524 (781)
264 3mbr_X Glutamine cyclotransfer 98.7 9.7E-06 3.3E-10 69.0 23.0 182 229-459 22-222 (243)
265 3v9f_A Two-component system se 98.7 5.9E-05 2E-09 77.8 33.8 282 124-470 312-610 (781)
266 3hxj_A Pyrrolo-quinoline quino 98.7 2.6E-06 9E-11 77.8 20.7 176 136-345 107-282 (330)
267 3nok_A Glutaminyl cyclase; bet 98.7 3.5E-06 1.2E-10 72.3 19.0 181 126-336 56-254 (268)
268 3v64_C Agrin; beta propeller, 98.6 0.00026 9E-09 65.0 31.4 197 124-347 33-234 (349)
269 3tc9_A Hypothetical hydrolase; 98.6 3.2E-05 1.1E-09 73.3 25.0 154 126-300 138-300 (430)
270 2xbg_A YCF48-like protein; pho 98.6 0.00046 1.6E-08 62.8 33.2 279 124-469 35-320 (327)
271 1k3i_A Galactose oxidase precu 98.6 2.6E-06 8.8E-11 85.9 18.3 113 174-300 190-322 (656)
272 2xe4_A Oligopeptidase B; hydro 98.5 4E-05 1.4E-09 78.4 26.8 155 171-346 175-353 (751)
273 3tc9_A Hypothetical hydrolase; 98.5 2.2E-05 7.4E-10 74.5 22.3 154 171-347 138-301 (430)
274 1ijq_A LDL receptor, low-densi 98.4 0.00083 2.8E-08 60.7 31.7 184 138-347 3-195 (316)
275 3v65_B Low-density lipoprotein 98.4 0.00031 1.1E-08 65.5 28.1 195 126-347 78-277 (386)
276 4hw6_A Hypothetical protein, I 98.4 0.00014 4.7E-09 68.9 25.2 155 171-347 140-304 (433)
277 3qqz_A Putative uncharacterize 98.4 0.00023 7.8E-09 61.5 24.1 202 228-468 27-250 (255)
278 2xzh_A Clathrin heavy chain 1; 98.4 0.00086 2.9E-08 59.0 28.6 267 145-472 48-333 (365)
279 3v64_C Agrin; beta propeller, 98.4 0.00059 2E-08 62.7 28.5 199 229-472 74-276 (349)
280 3v65_B Low-density lipoprotein 98.4 0.00021 7E-09 66.8 25.6 227 183-472 89-319 (386)
281 4hw6_A Hypothetical protein, I 98.4 0.00022 7.4E-09 67.6 25.6 198 126-345 140-372 (433)
282 3p5b_L Low density lipoprotein 98.4 0.0016 5.3E-08 61.0 30.9 184 138-347 85-277 (400)
283 1ijq_A LDL receptor, low-densi 98.4 0.0014 4.7E-08 59.2 31.1 228 183-473 3-240 (316)
284 3kya_A Putative phosphatase; s 98.3 0.00022 7.5E-09 67.8 24.6 159 126-300 140-340 (496)
285 1bpo_A Protein (clathrin); cla 98.3 0.0016 5.3E-08 59.8 28.5 268 145-472 47-332 (494)
286 3sov_A LRP-6, low-density lipo 98.3 0.0015 5.3E-08 58.9 28.2 187 138-347 6-197 (318)
287 2p9w_A MAL S 1 allergenic prot 98.2 0.00088 3E-08 59.6 23.2 168 128-300 16-214 (334)
288 3kya_A Putative phosphatase; s 98.1 0.0014 4.7E-08 62.4 24.6 161 171-346 140-340 (496)
289 3m0c_C LDL receptor, low-densi 98.1 0.004 1.4E-07 63.4 29.5 196 128-347 388-589 (791)
290 3p5b_L Low density lipoprotein 98.1 0.0067 2.3E-07 56.7 29.7 228 183-473 85-322 (400)
291 3sov_A LRP-6, low-density lipo 98.1 0.0052 1.8E-07 55.4 28.3 224 190-474 12-241 (318)
292 3s94_A LRP-6, low-density lipo 98.0 0.014 4.9E-07 57.8 34.3 203 124-350 39-246 (619)
293 3amr_A 3-phytase; beta-propell 98.0 0.0022 7.4E-08 57.6 21.9 193 238-470 39-262 (355)
294 3amr_A 3-phytase; beta-propell 97.9 0.0042 1.4E-07 55.8 22.5 193 135-346 39-262 (355)
295 1n7d_A LDL receptor, low-densi 97.9 8.8E-05 3E-09 74.9 13.2 178 145-347 385-571 (699)
296 2p9w_A MAL S 1 allergenic prot 97.9 0.00066 2.3E-08 60.3 17.0 162 171-347 14-215 (334)
297 2ism_A Putative oxidoreductase 97.9 0.0098 3.4E-07 54.5 25.0 104 171-289 32-153 (352)
298 3m0c_C LDL receptor, low-densi 97.8 0.015 5.1E-07 59.2 27.8 198 229-472 425-633 (791)
299 2vpj_A Kelch-like protein 12; 97.8 0.0052 1.8E-07 54.9 22.3 188 135-347 14-231 (301)
300 4a0p_A LRP6, LRP-6, low-densit 97.8 0.033 1.1E-06 55.3 30.9 186 138-347 8-197 (628)
301 2vpj_A Kelch-like protein 12; 97.8 0.0021 7.3E-08 57.5 18.5 146 180-347 14-184 (301)
302 2xn4_A Kelch-like protein 2; s 97.8 0.0067 2.3E-07 54.3 21.5 187 136-347 16-229 (302)
303 2ism_A Putative oxidoreductase 97.7 0.0088 3E-07 54.8 22.5 153 126-290 32-222 (352)
304 3ei3_A DNA damage-binding prot 97.7 0.035 1.2E-06 59.1 29.7 191 232-468 836-1059(1158)
305 3ei3_A DNA damage-binding prot 97.7 0.072 2.5E-06 56.8 36.8 194 123-337 552-757 (1158)
306 3s94_A LRP-6, low-density lipo 97.7 0.022 7.6E-07 56.5 26.4 182 144-347 16-202 (619)
307 4a0p_A LRP6, LRP-6, low-densit 97.7 0.05 1.7E-06 54.0 29.8 227 183-473 8-239 (628)
308 2xn4_A Kelch-like protein 2; s 97.7 0.0068 2.3E-07 54.2 20.8 230 181-472 16-277 (302)
309 3ii7_A Kelch-like protein 7; p 97.7 0.007 2.4E-07 54.2 20.5 144 182-347 13-178 (306)
310 2xbg_A YCF48-like protein; pho 97.7 0.013 4.5E-07 53.1 22.3 192 125-345 122-320 (327)
311 3ii7_A Kelch-like protein 7; p 97.6 0.014 5E-07 52.1 21.8 186 137-347 13-225 (306)
312 1zgk_A Kelch-like ECH-associat 97.6 0.011 3.8E-07 53.0 20.9 190 133-347 22-240 (308)
313 2g8s_A Glucose/sorbosone dehyd 97.5 0.05 1.7E-06 49.8 29.1 56 409-464 288-347 (353)
314 4asc_A Kelch repeat and BTB do 97.5 0.019 6.6E-07 51.6 21.4 184 138-347 7-221 (315)
315 1xi4_A Clathrin heavy chain; a 97.5 0.0056 1.9E-07 64.8 19.3 268 145-473 47-333 (1630)
316 3sre_A PON1, serum paraoxonase 97.5 0.017 5.8E-07 52.5 20.0 199 127-344 52-295 (355)
317 3a9g_A Putative uncharacterize 97.5 0.06 2.1E-06 49.2 27.3 252 171-459 30-330 (354)
318 3a9g_A Putative uncharacterize 97.5 0.061 2.1E-06 49.2 25.3 213 125-347 29-296 (354)
319 1n7d_A LDL receptor, low-densi 97.4 0.00074 2.5E-08 68.2 11.4 198 229-472 407-615 (699)
320 2xzh_A Clathrin heavy chain 1; 97.4 0.061 2.1E-06 47.5 29.1 218 191-473 49-292 (365)
321 1zgk_A Kelch-like ECH-associat 97.4 0.022 7.6E-07 51.0 19.6 147 179-347 23-193 (308)
322 4asc_A Kelch repeat and BTB do 97.3 0.026 8.8E-07 50.8 19.6 140 184-347 8-174 (315)
323 3pbp_A Nucleoporin NUP82; beta 97.3 0.018 6.1E-07 52.9 17.0 162 132-297 28-208 (452)
324 3sre_A PON1, serum paraoxonase 97.3 0.059 2E-06 49.0 20.7 189 229-461 51-287 (355)
325 1bpo_A Protein (clathrin); cla 97.2 0.13 4.3E-06 47.5 29.1 218 191-473 48-291 (494)
326 2woz_A Kelch repeat and BTB do 97.2 0.067 2.3E-06 48.1 20.7 183 138-347 18-231 (318)
327 3sbq_A Nitrous-oxide reductase 97.1 0.21 7.1E-06 47.6 23.1 94 139-247 73-196 (638)
328 1cru_A Protein (soluble quinop 97.1 0.2 6.9E-06 47.4 29.4 111 171-290 28-163 (454)
329 2uvk_A YJHT; unknown function, 97.1 0.041 1.4E-06 50.4 18.1 146 135-299 19-224 (357)
330 2woz_A Kelch repeat and BTB do 97.1 0.078 2.7E-06 47.6 19.7 106 236-347 54-184 (318)
331 3pbp_A Nucleoporin NUP82; beta 97.0 0.015 5E-07 53.5 13.5 122 126-254 67-208 (452)
332 2uvk_A YJHT; unknown function, 96.7 0.084 2.9E-06 48.3 17.4 51 421-473 286-344 (357)
333 3s25_A Hypothetical 7-bladed b 96.6 0.34 1.2E-05 43.0 25.3 173 132-347 21-216 (302)
334 2be1_A Serine/threonine-protei 96.6 0.38 1.3E-05 43.3 19.8 113 182-313 11-138 (339)
335 3s25_A Hypothetical 7-bladed b 96.6 0.32 1.1E-05 43.1 19.4 135 179-347 23-176 (302)
336 3ott_A Two-component system se 96.5 0.88 3E-05 46.4 32.6 197 125-347 191-401 (758)
337 1tl2_A L10, protein (tachylect 96.4 0.22 7.6E-06 41.3 15.2 149 126-294 42-203 (236)
338 3ott_A Two-component system se 96.3 1.1 3.8E-05 45.7 32.6 194 124-347 62-260 (758)
339 1xi4_A Clathrin heavy chain; a 96.3 0.35 1.2E-05 51.7 20.0 220 190-474 47-292 (1630)
340 3das_A Putative oxidoreductase 96.3 0.6 2E-05 42.2 30.7 254 171-459 33-326 (347)
341 1tl2_A L10, protein (tachylect 96.2 0.44 1.5E-05 39.6 17.5 157 171-347 42-208 (236)
342 2zwa_A Leucine carboxyl methyl 96.1 0.37 1.3E-05 48.5 18.9 198 134-347 396-635 (695)
343 3das_A Putative oxidoreductase 96.0 0.41 1.4E-05 43.3 16.6 157 124-288 31-219 (347)
344 1cru_A Protein (soluble quinop 95.8 0.52 1.8E-05 44.6 17.3 115 125-246 27-162 (454)
345 2be1_A Serine/threonine-protei 95.4 0.96 3.3E-05 40.6 16.8 148 137-298 11-181 (339)
346 2zwa_A Leucine carboxyl methyl 94.9 0.75 2.6E-05 46.3 16.2 157 130-300 446-634 (695)
347 2g8s_A Glucose/sorbosone dehyd 92.9 5.2 0.00018 36.2 22.2 66 270-339 271-346 (353)
348 3sbq_A Nitrous-oxide reductase 89.0 2.7 9.3E-05 40.2 10.3 114 172-290 325-454 (638)
349 3qhy_B Beta-lactamase inhibito 88.3 12 0.00041 32.5 15.8 183 126-347 64-246 (282)
350 2wg3_C Hedgehog-interacting pr 86.6 12 0.00041 35.3 13.4 30 317-346 14-44 (463)
351 3qhy_B Beta-lactamase inhibito 86.3 16 0.00054 31.7 20.7 144 171-347 25-168 (282)
352 3uc1_A DNA gyrase subunit A; D 85.3 20 0.00068 31.9 22.9 209 126-347 43-279 (327)
353 3b7f_A Glycosyl hydrolase, BNR 81.6 31 0.0011 31.4 28.3 166 124-292 54-254 (394)
354 3q6k_A 43.2 kDa salivary prote 80.2 35 0.0012 31.1 23.7 206 124-334 86-341 (381)
355 4gq2_M Nucleoporin NUP120; bet 79.6 36 0.0012 35.5 14.8 38 229-266 237-274 (950)
356 2wg3_C Hedgehog-interacting pr 79.3 42 0.0014 31.5 28.9 116 171-292 15-160 (463)
357 1suu_A DNA gyrase subunit A; t 79.0 33 0.0011 30.2 23.4 201 134-347 6-231 (312)
358 4gq2_M Nucleoporin NUP120; bet 77.9 17 0.00059 38.0 11.8 41 124-164 235-275 (950)
359 3uc1_A DNA gyrase subunit A; D 76.3 42 0.0014 29.8 21.9 168 125-300 95-278 (327)
360 3no0_A DNA gyrase subunit A; D 74.3 42 0.0014 28.9 21.5 205 124-347 23-246 (276)
361 4hvt_A Ritya.17583.B, post-pro 70.0 94 0.0032 31.1 18.7 202 127-347 131-381 (711)
362 1wp5_A Topoisomerase IV; broke 67.3 67 0.0023 28.4 24.0 155 179-347 3-174 (323)
363 3f7f_A Nucleoporin NUP120; nuc 66.9 50 0.0017 32.8 11.3 38 228-267 222-259 (729)
364 3f7f_A Nucleoporin NUP120; nuc 66.8 67 0.0023 32.0 12.2 37 171-209 223-259 (729)
365 3b7f_A Glycosyl hydrolase, BNR 66.7 76 0.0026 28.8 29.1 190 137-338 23-254 (394)
366 3zwu_A Alkaline phosphatase PH 64.4 32 0.0011 33.5 9.4 58 128-187 479-548 (592)
367 1zi0_A DNA gyrase subunit A; b 60.7 86 0.003 27.4 26.3 251 179-471 1-277 (307)
368 3zwu_A Alkaline phosphatase PH 54.5 32 0.0011 33.5 7.5 60 171-245 477-548 (592)
369 4fhn_B Nucleoporin NUP120; pro 54.1 23 0.00079 37.9 7.2 39 171-209 239-277 (1139)
370 4a9v_A PHOX; hydrolase, beta-p 53.9 90 0.0031 30.2 10.3 62 125-188 476-549 (592)
371 4fhn_B Nucleoporin NUP120; pro 53.1 15 0.0005 39.4 5.4 40 125-164 238-277 (1139)
372 4a9v_A PHOX; hydrolase, beta-p 51.5 51 0.0018 31.8 8.2 62 170-246 476-549 (592)
373 1suu_A DNA gyrase subunit A; t 51.4 1.3E+02 0.0043 26.4 26.8 159 179-347 6-181 (312)
374 3q6k_A 43.2 kDa salivary prote 51.2 1.4E+02 0.0049 27.0 20.8 51 408-458 285-341 (381)
375 3no0_A DNA gyrase subunit A; D 50.5 1.2E+02 0.0041 26.0 19.6 207 229-471 25-246 (276)
376 1wp5_A Topoisomerase IV; broke 49.7 1.4E+02 0.0047 26.4 24.0 202 134-347 3-225 (323)
377 3l6v_A GYRA, DNA gyrase subuni 48.6 1.5E+02 0.0053 26.7 24.6 212 124-347 45-316 (370)
378 1olz_A Semaphorin 4D; developm 48.6 1.3E+02 0.0045 29.8 10.9 72 124-195 396-477 (663)
379 4hvt_A Ritya.17583.B, post-pro 48.3 2.2E+02 0.0076 28.4 26.6 61 410-470 360-429 (711)
380 3l6v_A GYRA, DNA gyrase subuni 47.1 1.6E+02 0.0056 26.5 25.7 162 177-347 3-180 (370)
381 3al9_A Plexin-A2; beta-propell 35.2 64 0.0022 31.0 6.3 70 125-195 400-476 (539)
382 1zi0_A DNA gyrase subunit A; b 33.6 2.4E+02 0.0082 24.5 27.2 202 134-347 1-226 (307)
383 3kci_A Probable E3 ubiquitin-p 32.0 2.8E+02 0.0097 24.9 31.5 116 229-347 106-241 (389)
384 1sqj_A OXG-RCBH, oligoxylogluc 27.5 4.9E+02 0.017 26.3 17.5 155 170-337 15-190 (789)
385 1sqj_A OXG-RCBH, oligoxylogluc 26.9 5.1E+02 0.017 26.2 20.0 159 124-291 14-190 (789)
386 1q47_A Semaphorin 3A; beta pro 24.9 1.9E+02 0.0066 27.3 7.5 56 411-466 422-487 (495)
387 3a0f_A Xyloglucanase; beta-pro 24.2 5.6E+02 0.019 25.8 21.1 64 123-187 19-93 (763)
388 4gz8_A Semaphorin-3A; multi-do 21.9 2.7E+02 0.0094 27.5 8.1 55 412-466 431-495 (667)
389 3v4v_A Integrin alpha-4; cell 21.9 5.6E+02 0.019 24.9 11.0 119 128-256 169-311 (597)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-48 Score=372.78 Aligned_cols=290 Identities=22% Similarity=0.317 Sum_probs=259.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 46788999999999999999999999999999999999985544 335788899999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
|+.+++..... .+|...|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|.++.
T Consensus 178 d~~~~~~~~~~----------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 178 DFQGFECIRTM----------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp ETTSSCEEECC----------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eCCCCceeEEE----------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99877653322 25777999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC--------------------CCEEEEeeC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--------------------GRYLISNGK 336 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~s~~~ 336 (491)
|+ +++.+|++|+.|++|++||++ .......+.+|...|.+++|+|+ +.+|++|+.
T Consensus 242 ~~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 242 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EC-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 97 889999999999999999998 77788889999999999999996 678999999
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
|+.|++||+++ +..+..+.+|..... +.+|+|++++|++|
T Consensus 317 D~~i~iwd~~~----------------------------------~~~~~~~~~h~~~v~------~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 317 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWVR------GVLFHSGGKFILSC 356 (410)
T ss_dssp TSEEEEEETTT----------------------------------TEEEEEEECCSSCEE------EEEECSSSSCEEEE
T ss_pred CCeEEEEECCC----------------------------------CceEEEEECCCCcEE------EEEEcCCCCEEEEE
Confidence 99999999987 466777777774322 23567799999999
Q ss_pred ecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++|+++
T Consensus 357 s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999963
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-48 Score=356.11 Aligned_cols=290 Identities=16% Similarity=0.266 Sum_probs=254.9
Q ss_pred cccCCCCceEEEEEcCC----CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 119 PVDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~d----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
.+.+|.+.|++++|+|+ +.+|++|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34689999999999985 67999999999999999987643 22334578888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+||+.+++...... .|...+.+++|+|++++|++|+.+|.|++||+.+++....+..|...|.+
T Consensus 106 lWd~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 106 LWDLENGKQIKSID----------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEETTTTEEEEEEE----------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEECCCCCEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999887544322 13336788999999999999999999999999999999899999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|+ +++++|++|+.||.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 170 ~~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~------- 237 (321)
T 3ow8_A 170 IAYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH------- 237 (321)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence 9998 889999999999999999998 7788889999999999999999999999999999999999987
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
...+..+.+|.... .+++|+|++++|++++.|+.|++||+.+++++.
T Consensus 238 ---------------------------~~~~~~~~~h~~~v------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 238 ---------------------------ANLAGTLSGHASWV------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp ---------------------------CCEEEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------cceeEEEcCCCCce------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 35566677776332 234677899999999999999999999999999
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
.+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 285 ~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-47 Score=356.13 Aligned_cols=295 Identities=19% Similarity=0.302 Sum_probs=253.9
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
+....+.+|.+.|++++|+|||++|++|+.||+|+|||+.++..+... ..|...|.+++|+|++++|++++.|+.|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 334678899999999999999999999999999999999998666544 35666899999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+|++.++....... . ...+|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+
T Consensus 123 iw~~~~~~~~~~~~--~----------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 123 IYNLKTREGNVRVS--R----------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEETTTCSBSCEEE--E----------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEECccCCCcceeE--E----------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEE
Confidence 99998754211100 0 1125777999999998875 899999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|+ +++++|++|+.|+.|++||++ .+..+..+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 190 ~~~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------ 258 (340)
T 1got_B 190 LSLA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------ 258 (340)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred EEEC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------
Confidence 9998 789999999999999999998 77888899999999999999999999999999999999999873
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
..+..+........+ .+.+|+|++++|++|+.||.|++||+.+++.+.
T Consensus 259 ----------------------------~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 259 ----------------------------QELMTYSHDNIICGI----TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp ----------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ----------------------------cEEEEEccCCcccce----EEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 333333322211122 234677799999999999999999999999999
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
.+.+|.++|.+++|+|++.+|+||+.||.|++||
T Consensus 307 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-47 Score=356.56 Aligned_cols=299 Identities=18% Similarity=0.272 Sum_probs=254.2
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
.....+.+|.+.|++++|+|++++||+|+.||+|+|||..++....... .+...|.+++|+|++.+|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 3346788999999999999999999999999999999999886655443 3455799999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+|++............. ...+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+
T Consensus 132 v~~~~~~~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKK----------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEECCCCTTCCSGGGCE----------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeccccccccccce----------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 99987543211111100 11247778999999999999999999999999999999999999999999999
Q ss_pred EEEecC-CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 275 VCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 275 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
++|+|. ++++|++|+.||.|++||++ .++++..+.+|...|++++|+|++.+|++++.|+.|++||++..
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~----- 272 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD----- 272 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----
Confidence 999843 46899999999999999998 77888899999999999999999999999999999999999872
Q ss_pred ccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE
Q 011179 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 433 (491)
..+..+..+.....+ .+.+|+|++++|++|+.|+.|++||+.+++.+
T Consensus 273 -----------------------------~~~~~~~~~~~~~~~----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 273 -----------------------------REVAIYSKESIIFGA----SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp -----------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred -----------------------------cEEEEEcCCCcccce----eEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 233333332211112 23357779999999999999999999999999
Q ss_pred EeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
..+.+|.+.|++++|+|++++|++|+.||.|++|+
T Consensus 320 ~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999996
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-47 Score=353.03 Aligned_cols=314 Identities=21% Similarity=0.310 Sum_probs=247.6
Q ss_pred ccccCCCC-ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~-~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|++++|++++.|+.|++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45678887 99999999999999999999999999999886555555567888899999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEeccCCCee
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVN 273 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~ 273 (491)
++..+....... ..+|...|.+++|+|++++|++|+.|+.|++||+.++. .+..+..|...|.
T Consensus 89 ~~~~~~~~~~~~--------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 89 KKNQDDFECVTT--------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EECCC-EEEEEE--------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EccCCCeEEEEE--------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 988764322221 12577799999999999999999999999999998763 4566778999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCC--ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
+++|+ +++++|++++.|+.|++||.+ .. .+...+.+|...|++++|+|++++|++++.|+.|++||.......
T Consensus 155 ~~~~~-p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 155 HVVWH-PSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp EEEEC-SSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred EEEEC-CCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99998 788999999999999999987 33 345678899999999999999999999999999999997543221
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
......... .....+..+.+ |.. ..+..+|+|++..|++++.|+.|++|+...+
T Consensus 230 ~~~~~~~~~-------------------~~~~~~~~~~~~h~~------~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 230 QGVACSGSD-------------------PSWKCICTLSGFHSR------TIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp TCCCCC----------------------CEEEEEEEECSSCSS------CEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred ccceeeccC-------------------CccceeEEecCCCCC------cEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 111000000 00122333333 221 1234467779999999999999999998754
Q ss_pred c---------EEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCC
Q 011179 431 E---------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 431 ~---------~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
. ......+|...|++++|+|++. +||+|+.||.|++|++......
T Consensus 285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2 1223468999999999999985 9999999999999999876644
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-47 Score=363.90 Aligned_cols=308 Identities=18% Similarity=0.285 Sum_probs=254.7
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.....+ ..|...|.+++|+|++++|++++.|+.+++|
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 3567899999999999999999999999999999999998665543 4566689999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEE-----eccCC
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTS 270 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~ 270 (491)
++.+........ .......+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|..
T Consensus 136 ~~~~~~~~~~~~---------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 136 NLSSQADRDGNM---------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp ECCCCSSCCCSS---------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred ECCCCccccCCc---------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 997643211000 001123468889999999996 457999999999999999999988777 57899
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
.|.+++|++.++++|++|+.|++|++||++. ....+..+.+|...|++++|+|++++|++++.|++|++||+++.
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-- 281 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-- 281 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence 9999999877899999999999999999972 34667788999999999999999999999999999999999873
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee-EeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
..+..+..+... ........+.+|+|+|++|++|+.||.|++||+.+
T Consensus 282 --------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 282 --------------------------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp --------------------------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred --------------------------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 333333322110 00011123446788999999999999999999999
Q ss_pred CcEEEee----ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 430 GEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 430 ~~~~~~~----~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++.+..+ .+|.+.|++++|+|++++|+||+.||.|++|++....
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9888777 6899999999999999999999999999999998654
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.8e-46 Score=340.86 Aligned_cols=293 Identities=18% Similarity=0.245 Sum_probs=248.7
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
....+.+|.+.|++++|+|+|++|++|+.||+|++||+.++..+..+ ..|...|.+++|+|++++|++++.|+.|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34567899999999999999999999999999999999998665543 356668999999999999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~ 274 (491)
||+.+++...... +|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+
T Consensus 82 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 82 FNYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887543321 47779999999999999999999999999999887 455678899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
++|+|.++.+|++|+.|++|++||++ ...+...+ .+|...+..+.|+| ++.+|++++.|+.|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99986678999999999999999997 44444433 45668899999986 778999999999999999987
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
...+..+.+|..... ..+|+|++++|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~~v~------~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMSNVS------FAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSSCEE------EEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCCCEE------EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 466778888874332 23577799999999999999999999999
Q ss_pred EEEeeccCCCCeeeeEecCCCC--eEEEEeCCCcEEEEcCCCC
Q 011179 432 QVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~sp~~~--~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+..+..|...+.+++|+|++. ++++|+.|| +.+|++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999999999999999886 577776655 778887653
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-46 Score=353.40 Aligned_cols=299 Identities=21% Similarity=0.245 Sum_probs=232.8
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEc------CCeEEEEECCCCeEEEEE-eecCCCceeEEEEEECCCCCeEEEEECCCeE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~------dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 193 (491)
..|...|++++|||||++||+|+. |+.|++|+..++...... .....|...|.+++|+|+++ +++++.||.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 579999999999999999999997 788999998876432221 11234566799999999986 5567889999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
+|||+.+++........ ..+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|+
T Consensus 118 ~lWd~~~~~~~~~~~~~------------~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~ 185 (357)
T 4g56_B 118 ELWEILEKESLLVNKFA------------KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185 (357)
T ss_dssp EEC--------CCCCEE------------ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEeeccccceeEEEeec------------cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 99999887654433221 125777999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE--eccccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCC
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
+++|++....++++++.|+.|++||++ .+++... +..|...+++++|+|+ +.+|++|+.|+.|++||+++.
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-- 259 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-- 259 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--
T ss_pred EEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--
Confidence 999985555689999999999999998 4444433 3456778999999997 568899999999999999873
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC-cEEEEEecCCeEEEEECCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~ 429 (491)
..+..+.+|.... .. ++|+|++ ++|++|+.|+.|+|||+.+
T Consensus 260 --------------------------------~~~~~~~~~~~~v--~~----l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 260 --------------------------------DSAQTSAVHSQNI--TG----LAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --------------------------------GGCEEECCCSSCE--EE----EEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --------------------------------cEeEEEeccceeE--EE----EEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 4556666666332 22 3566666 6899999999999999999
Q ss_pred CcEEEeeccCCCCeeeeEecC-CCCeEEEEeCCCcEEEEcCCCCCCCCC
Q 011179 430 GEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 477 (491)
++++..+ +|.+.|++++|+| ++.+|+|++.||.|++|++....+...
T Consensus 302 ~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 302 SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 9887665 6999999999999 789999999999999999987655443
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=349.47 Aligned_cols=295 Identities=20% Similarity=0.229 Sum_probs=233.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEE---------EEeecCCCceeEEEEEECCCCCeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ---------KDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
..|...|.+++|+|||++|++++ |+++++||.... ... .......+...|.+++|+|++ .|++++.||
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW-LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE-EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceee-eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 45778899999999999999887 777888873210 000 000011223469999999985 688999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
.|+|||+.+++........ ..+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...
T Consensus 104 ~v~lWd~~~~~~~~~~~~~------------~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFC------------KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp EEEEEEECTTSSCEEEEEE------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEEeccCCCceeEeecc------------ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 9999999988764433221 1257779999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--cccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCC
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 348 (491)
|.+++|++.+..+|++++.|++|++||++ .+++...+. .|...+.+++|+|+ +++|++|+.|+.|++||+++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~- 246 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS- 246 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eEEEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-
Confidence 99999985556789999999999999998 666666553 45567999999985 57889999999999999987
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC-cEEEEEecCCeEEEEEC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~ 427 (491)
++.+..+.+|.... .+.+|+|++ ++|++|+.|+.|+|||+
T Consensus 247 ---------------------------------~~~~~~~~~h~~~v------~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 247 ---------------------------------TSCVLSSAVHSQCV------TGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp -----------------------------------CCEEEECCSSCE------EEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ---------------------------------CcEEEEEcCCCCCE------EEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 35667778877432 233567787 68999999999999999
Q ss_pred CCCcEEEeeccCCCCeeeeEecCCCC-eEEEEeCCCcEEEEcCCCCCCC
Q 011179 428 VSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+++++ .+.+|.+.|++++|+|+++ +|+|++.||+|++|++.....+
T Consensus 288 ~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 288 SLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp TCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred CCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 988765 5678999999999999987 5779999999999999876433
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.9e-45 Score=336.44 Aligned_cols=293 Identities=28% Similarity=0.469 Sum_probs=252.6
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|...|++++|+|+|++|++|+.||.|++|++.++..... ...|...|.+++|+|++++|++++.|+.|++|
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 356789999999999999999999999999999999998865543 35677789999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
|+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.+++
T Consensus 93 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 93 DVSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 999876543321 4666899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+ +++++|++++.||.|++||++ ..+.+..+ ..+...+..++|+|++++|++++.|+.|++||+++
T Consensus 157 ~~-~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-------- 223 (312)
T 4ery_A 157 FN-RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-------- 223 (312)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT--------
T ss_pred Ec-CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence 97 789999999999999999998 55655554 35667899999999999999999999999999987
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
...+..+.+|..........+. .+++.+|++|+.||.|++||+.+++.+..
T Consensus 224 --------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 224 --------------------------GKCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp --------------------------TEEEEEECSSCCSSSCCCEEEE---CSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred --------------------------CcEEEEEEecCCceEEEEEEEE---eCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 3455566665533222222222 24789999999999999999999999999
Q ss_pred eccCCCCeeeeEecCCCCeEEEEe--CCCcEEEEcCC
Q 011179 436 LKYHTSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 470 (491)
Q Consensus 436 ~~~h~~~v~~~~~sp~~~~l~s~~--~Dg~v~iw~~~ 470 (491)
+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999997 69999999864
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-44 Score=333.31 Aligned_cols=291 Identities=18% Similarity=0.255 Sum_probs=244.5
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCC--eEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
..+.+|.+.|++++|+|++ ++|++|+.|++|++|++... ..........+|...|.+++|+|++++|++++.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 4578999999999999965 89999999999999998642 11122334567888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+||+.+++..... .+|...|.+++|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+
T Consensus 91 ~wd~~~~~~~~~~----------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 91 LWDVATGETYQRF----------------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153 (319)
T ss_dssp EEETTTTEEEEEE----------------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred EEECCCCCeeEEE----------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence 9999988754332 1577799999999999999999999999999996 4566788899999999
Q ss_pred EEEecC-----CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 275 VCFGDE-----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 275 ~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
+.|.|. ++..|++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-- 227 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-- 227 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT--
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 999843 34589999999999999998 6777888899999999999999999999999999999999987
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 429 (491)
...+..+..+.. ..+.+|+|++.+|++++.+ .+++|++..
T Consensus 228 --------------------------------~~~~~~~~~~~~-------v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 228 --------------------------------KKAMYTLSAQDE-------VFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp --------------------------------TEEEEEEECCSC-------EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred --------------------------------CcEEEEecCCCc-------EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 344555554432 2344677899999988755 599999988
Q ss_pred CcEEEeec--------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 430 GEQVAALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 430 ~~~~~~~~--------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+..+..+. .|...+.+++|+|||++|++|+.||.|++|++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 87776654 3466799999999999999999999999999865
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-44 Score=361.94 Aligned_cols=352 Identities=20% Similarity=0.254 Sum_probs=248.5
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEE-e---------------------
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-I--------------------- 163 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~-~--------------------- 163 (491)
..+++.-.......+.+|...|++++|||||++||+|+.||+|+|||+.++...... .
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 334444344556778899999999999999999999999999999998643211110 0
Q ss_pred ---------------------ecCCCceeEEEEEECCCCC-eEEEEECCCeEEEEECCCCcccccccccccccccccccc
Q 011179 164 ---------------------LAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 164 ---------------------~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
...+|...|.+++|+|++. .|++++.|++|++||..+++....
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~--------------- 185 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--------------- 185 (611)
T ss_dssp EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE---------------
T ss_pred EECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee---------------
Confidence 0123444566666666654 366666666677776555433211
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------ccCCCeeEEEEecCCCCEEEEEeCCCeE
Q 011179 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 222 ~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~i 294 (491)
..+|...|.+++|+|++++|++++.|++|++||+.+++.+..+. +|.+.|.+++|+ |++++|++++.|++|
T Consensus 186 -l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 186 -FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTI 263 (611)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred -eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeE
Confidence 23688899999999999999999999999999999998888774 799999999998 789999999999999
Q ss_pred EEEecccccC---------------------------------------CCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 295 KVWDRRCLNV---------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 295 ~iwd~~~~~~---------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
++||++.... .+.....+.+|...|++++|+|+|++|++++
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 9999873211 0112345568999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCcccccCCCcc----------------------ce-------------------------------
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRS----------------------YE------------------------------- 362 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~----------------------~~------------------------------- 362 (491)
.|+.|++||+.+............. ..
T Consensus 344 ~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 423 (611)
T 1nr0_A 344 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 423 (611)
T ss_dssp TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred CCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCC
Confidence 9999999999875432211000000 00
Q ss_pred -------------------------eeeeeecCCCCCccccCCC-CceEEEEeCCcee----E--eeEEEEecccccCCC
Q 011179 363 -------------------------WDYRWMDYPPQARDLKHPC-DQSVATYKGHSVL----R--TLIRCHFSPVYSTGQ 410 (491)
Q Consensus 363 -------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~--~~~~~~~~~~~s~~~ 410 (491)
..+..+.+.|++..+.... +..+..+...... . .......+.+|||+|
T Consensus 424 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg 503 (611)
T 1nr0_A 424 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 503 (611)
T ss_dssp SCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS
T ss_pred cEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC
Confidence 0011233334333333221 2233333211100 0 001123455788899
Q ss_pred cEEEEEecCCeEEEEECCC-CcEEEe--eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 411 KYIYTGSHDSCVYVYDLVS-GEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
++|++++.|+.|++||+.+ ++.+.. +.+|...|++++|+||+++|++++.|++|++|++..+..
T Consensus 504 ~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 9999999999999999987 555443 345999999999999999999999999999999987653
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-44 Score=342.06 Aligned_cols=301 Identities=24% Similarity=0.402 Sum_probs=243.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecC---------------CCceeEEEEEECCCCCeEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------SLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~ 186 (491)
+|.+.|.|++|+|||++||+|+ ++.++||++.++..+..+.... .+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999987665432211 12224999999999999999
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
++.|+.|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~----------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMIL----------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEE----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEE----------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 999999999999887654322 2577799999999999999999999999999999998877764
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-------ccccCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
+...+.+++|+|.++++|++|+.|+.|++||++ .+..+..+ .+|...|.+++|+|++++|++++.|+.
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 667899999986689999999999999999997 55555554 579999999999999999999999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 419 (491)
|++||+++........ ..........+.+|.... .+.+++|++.+|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDFV------LSVATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSSCE------EEEEECGGGCEEEEEETT
T ss_pred EEEEECCCCCCccccc----------------------CCCCCcceEEEecccCcE------EEEEECCCCCEEEEEeCC
Confidence 9999998643211100 000123455666666322 233567799999999999
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecC------CCCeEEEEeCCCcEEEEcCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp------~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+.|++||+.+++++..+.+|...|.+++|++ ++++|+||+.||.|++|++...
T Consensus 332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999999999999999999886 6789999999999999998643
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-43 Score=330.82 Aligned_cols=292 Identities=16% Similarity=0.268 Sum_probs=235.6
Q ss_pred CccccCCCCceEEEEE-----cC-CCCEEEEEEcCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEECCCCCeEEE
Q 011179 117 PWPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~-----s~-dg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (491)
...+.+|.+.|++++| ++ ++++||+|+.|++|++||+.++.. ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3567899999999999 77 999999999999999999875421 1222345678889999999999999999
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
++.|++|++||+.+++..... .+|...|.+++|+|++++|++++.|+.|++||+.... .....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~----------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~ 156 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRF----------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSA 156 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEE----------------ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECC
T ss_pred EcCCCcEEEEECCCCcEEEEE----------------cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeee
Confidence 999999999999988654322 1477799999999999999999999999999998443 33333
Q ss_pred ---ccCCCeeEEEEecCCC----------CEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEE
Q 011179 267 ---AHTSDVNTVCFGDESG----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 267 ---~h~~~v~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 333 (491)
.|...|.+++|+ +++ .+|++++.|+.|++||. .......+.+|...|.+++|+|+|++|++
T Consensus 157 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 157 EKENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp TTTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 688999999998 444 79999999999999995 45667788899999999999999999999
Q ss_pred eeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEE
Q 011179 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
++.|+.|++||+.... .....+.... .+ .+.+|+|++.++
T Consensus 231 gs~dg~v~iwd~~~~~---------------------------------~~~~~~~~~~---~v----~~v~~sp~~~~l 270 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLT---------------------------------YPQREFDAGS---TI----NQIAFNPKLQWV 270 (343)
T ss_dssp EETTCEEEEEESSCCS---------------------------------SCSEEEECSS---CE----EEEEECSSSCEE
T ss_pred EcCCCeEEEEECCCCc---------------------------------ccceeecCCC---cE----EEEEECCCCCEE
Confidence 9999999999995422 1112221111 12 233667788887
Q ss_pred EEEecCCeEEEEECCCCcEEE--eec-----------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 414 YTGSHDSCVYVYDLVSGEQVA--ALK-----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 414 ~~~~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+++ .|+.|++||+.+++... .+. +|...|++++|+|++++|++|+.||.|++|++..+
T Consensus 271 a~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 271 AVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 755 57789999998776433 333 68889999999999999999999999999998653
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=328.45 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=228.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
...+.+|.++|++++|+|+ +||+|+.|++|++||+..+. ..........|...|.+++|+|++++|++++.|++|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 3457899999999999998 99999999999999998753 22222223348889999999999999999999999999
Q ss_pred EECCCCccccc-cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeEEEeccCC
Q 011179 196 VDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTS 270 (491)
Q Consensus 196 w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~ 270 (491)
|++........ ... .....+|...|.+++|+|++++|++|+.|+.|++||+.. .+++..+.+|..
T Consensus 85 w~~~~~~~~~~~~~~----------~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 85 WAKEESADRTFEMDL----------LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp EEC-------CCCEE----------EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred EEcccCcCcccccee----------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99864321100 000 001236888999999999999999999999999999943 246677889999
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.|.+++|+ |++++|++++.|++|++||.+.. ...++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++..
T Consensus 155 ~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 155 DVKHVIWH-PSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CEEEEEEC-SSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 99999998 78999999999999999998621 12567888999999999999998 778999999999999998753
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
...... . ......+.+ |.. .+.. .+|++++ +|++++.||.|++||.
T Consensus 232 ~~~~~~-------~-------------------~~~~~~~~~~h~~--~v~~----v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 232 DEDDQQ-------E-------------------WVCEAILPDVHKR--QVYN----VAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp CTTSCE-------E-------------------EEEEEECCSCCSS--CEEE----EEECTTS-CEEEEETTSCEEEEEE
T ss_pred Cccccc-------e-------------------eEEeeeccccccc--ceEE----EEEcCCC-EEEEEeCCCEEEEEEc
Confidence 211000 0 011222222 332 2222 3445454 8999999999999999
Q ss_pred CCCc--EEEe-eccCCC-CeeeeEecC--CCCeEEEEeCCCcEEEEcCCC
Q 011179 428 VSGE--QVAA-LKYHTS-PVRDCSWHP--SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 428 ~~~~--~~~~-~~~h~~-~v~~~~~sp--~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.+++ .+.. +.+|.. .|.+++|+| ++++|++|+.||.|++|++..
T Consensus 279 ~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 279 VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 8874 3333 357877 899999999 788999999999999999864
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-41 Score=317.71 Aligned_cols=294 Identities=20% Similarity=0.269 Sum_probs=241.0
Q ss_pred ccccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeE--EEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
..|.+|.+.|++++|+|+ +++||+|+.||+|+|||+.+++. ........+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 357899999999999998 68999999999999999876532 112234467888999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EEEeccCCCee
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVN 273 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~ 273 (491)
+|+........... .+...+..+.+++++++|++++.|+.+++||+...... ....+|...+.
T Consensus 112 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 112 LWDLTTGTTTRRFV----------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred EEeecccceeeeec----------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 99998776543322 12336888999999999999999999999999776543 33457899999
Q ss_pred EEEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 274 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 274 ~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
+++|++.. ..++++++.|+.|++||++ ..+.+..+.+|...|++++|+|++++|++++.|+.|++||+++
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~----- 246 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE----- 246 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-----
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-----
Confidence 99997433 4578899999999999998 7788889999999999999999999999999999999999987
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
...+..+..+... . ...++|++. +++++.|+.|++||+.++..
T Consensus 247 -----------------------------~~~~~~~~~~~~v---~----~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 247 -----------------------------GKHLYTLDGGDII---N----ALCFSPNRY-WLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp -----------------------------TEEEEEEECSSCE---E----EEEECSSSS-EEEEEETTEEEEEETTTTEE
T ss_pred -----------------------------CceeeeecCCceE---E----eeecCCCCc-eeeccCCCEEEEEECCCCeE
Confidence 3455555555422 2 224556665 55666799999999998877
Q ss_pred EEeec---------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 433 VAALK---------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 433 ~~~~~---------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+..+. +|...|++++|+|++++|++|+.||.|+|||+.++.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 66553 688999999999999999999999999999998764
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.1e-42 Score=343.36 Aligned_cols=283 Identities=24% Similarity=0.372 Sum_probs=247.0
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
....+.+|...|.+++|+|++++|++++.|+.|++||.... .+. ....|...|.+++|+|++++|++++.|+.|++
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE---EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 34567889999999999999999999999999999998765 332 23567778999999999999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|+... +..... .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 371 ~~~~~-~~~~~~----------------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 371 WNRNG-QLLQTL----------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp EETTC-CEEEEE----------------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred EcCCC-CEEEEe----------------cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 99643 222111 136668999999999999999999999999995 567778888999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 433 ~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-------- 498 (577)
T 2ymu_A 433 AFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------- 498 (577)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------
T ss_pred EEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------
Confidence 998 78999999999999999996 5677888999999999999999999999999999999999643
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
+.+..+.+|..... +++|+|++++|++++.||.|++||. +++++..
T Consensus 499 ---------------------------~~~~~~~~h~~~v~------~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 499 ---------------------------QLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp ---------------------------CEEEEEECCSSCEE------EEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred ---------------------------CEEEEEeCCCCCEE------EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 66777888774332 3367789999999999999999995 7889999
Q ss_pred eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 436 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 436 ~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
+.+|.+.|++++|+||+++|+|++.||+|++||
T Consensus 545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999997
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-42 Score=346.55 Aligned_cols=326 Identities=13% Similarity=0.138 Sum_probs=233.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+.+.+.+++|+|||++||+++ ++.|++|++.++.... ...+|...|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 4477889999999999999987 5699999998764433 33578889999999999999999999999999999765
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
+....... .+|...|.+++|+|++++|++++.+ +.|++|| .++....+.+|...|.+++|
T Consensus 92 ~~~~~~~~--------------~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 92 THILKTTI--------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp TCCEEEEE--------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEE
T ss_pred cceeeEee--------------cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEE
Confidence 43221111 1466689999999999999998865 4677887 45566678899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+|.....|++|+.|++|++||.. ..+....+.+|...|.+++|+|+|++|++++.|+.|++||+.+..........
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred CCCCCeEEEEEeCCCeEEEEECC----CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 84434579999999999999987 67778889999999999999999999999999999999999875432221100
Q ss_pred ---CccceeeeeeecCCCCCccccC-CCCceEEEEeCCceeE-eeEE-------EEecccccCCCcEEEEEecCCeEEEE
Q 011179 358 ---FRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKGHSVLR-TLIR-------CHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~s~~~~~l~~~~~dg~i~iw 425 (491)
.......+..+.+.|++..+.. ..+..+..+....... .... ......+ ++..+++++.|+.+++|
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFV 309 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEE
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEE
Confidence 0011122333333343332222 2233344443222100 0000 0000111 33444444455555555
Q ss_pred ECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 426 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 426 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
|..+++....+.+|...|++++|+|++++|++++.||.|++||+..+.
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 544444555667899999999999999999999999999999998764
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.8e-43 Score=338.24 Aligned_cols=304 Identities=15% Similarity=0.188 Sum_probs=228.8
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCCeEEE
Q 011179 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i 195 (491)
.....|...|+|++|+| ++++||+|+.||.|+|||+.++.... .....+|...|++++|+| ++.+|++++.|++|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34567899999999999 56799999999999999998764332 234567888999999998 6889999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
||++++........ ..+...+.+++|+|++++|++|+.||.|++||+.. +.+..+.+|...|+++
T Consensus 192 wd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 192 QDFKGNILRVFASS--------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHV 256 (435)
T ss_dssp EETTSCEEEEEECC--------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEE
T ss_pred eeccCCceeEEecc--------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEee
Confidence 99987644322211 12333678899999999999999999999999865 4566788999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+|....+|++|+.|+.|++||++.... ........+|...|++++|+|+|++|++++.|+.|++||+++......
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~-- 333 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG-- 333 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE--
T ss_pred eecCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE--
Confidence 99865567899999999999999984332 122334467999999999999999999999999999999987543221
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE-----------e-cCCeEE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-----------S-HDSCVY 423 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-----------~-~dg~i~ 423 (491)
+..|..........+...++|++.+++++ + .++.|+
T Consensus 334 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 334 --------------------------------LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp --------------------------------ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred --------------------------------EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 11111000000000111223334444333 2 346799
Q ss_pred EEECCCCcEEEeec-cCCCCeeee-EecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 424 VYDLVSGEQVAALK-YHTSPVRDC-SWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 424 iwd~~~~~~~~~~~-~h~~~v~~~-~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++..++
T Consensus 382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999999988874 688889988 6999999999876 8899999998764
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-41 Score=318.29 Aligned_cols=291 Identities=16% Similarity=0.212 Sum_probs=251.5
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.|+.|++|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---DGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh---hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3567899999999999999999999999999999999998665543 5677799999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANK----------- 260 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~----------- 260 (491)
|+.+++...... |...+.+++|+|++++|++++.+ +.|++||+....
T Consensus 102 d~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 102 DVSNGQCVATWK-----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp ETTTCCEEEEEE-----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred ECCCCcEEEEee-----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 999887654433 22379999999999999999999 999999997653
Q ss_pred eeEEEeccCC--CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC-CceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 261 LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 261 ~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
....+..|.. .+.+++|+ +++++|++++.||.|++||++ . ...+..+..|...|.+++|+|++++|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CSEEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 3344556666 99999998 789999999999999999997 4 67788888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
+.|++||+++. ..+..+..... + ....++|+++++++++
T Consensus 240 ~~i~v~d~~~~----------------------------------~~~~~~~~~~~---~----~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 240 TNSFLVDVSTL----------------------------------QVLKKYETDCP---L----NTAVITPLKEFIILGG 278 (369)
T ss_dssp SEEEEEETTTC----------------------------------CEEEEEECSSC---E----EEEEECSSSSEEEEEE
T ss_pred ceEEEEECCCC----------------------------------ceeeeecCCCC---c----eeEEecCCCceEEEee
Confidence 99999999873 44444442221 1 2235777999999999
Q ss_pred cCC--------------eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 418 HDS--------------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 418 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 988 89999999999999999999999999999999999999999999999998654
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.1e-42 Score=326.47 Aligned_cols=311 Identities=14% Similarity=0.180 Sum_probs=241.8
Q ss_pred CccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~ 194 (491)
...+.+|...|++++|+|+| ++||+|+.||.|+|||+.++...... ...+|...|.+++|+| ++++|++++.|+.|+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-QGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-CCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 34668899999999999999 99999999999999999987554432 3346888999999999 779999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+||+.+........ ..+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+
T Consensus 145 iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 145 LRDFSGSVIQVFAK--------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTSCEEEEEEC--------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEECCCCceEEEec--------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 99998643322111 1134458999999999999999999999999999 57778888999999999
Q ss_pred EEEecCCCC-EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 275 VCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 275 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
++|+ ++++ +|++++.|+.|++||++........+..+ +|...|++++|+| ++++|++++.|+.|++||+++.....
T Consensus 210 ~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 210 AEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 9998 5666 99999999999999998544335555555 7999999999999 99999999999999999998855432
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
........ ...+. ......+.... . ....+++|++++ +|+.||.|++||+.+++.
T Consensus 288 ~~~~~~~~---------------~~~~~-~~~~~~~~p~~---~----~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 288 QIIIHPHR---------------QFQHL-TPIKATWHPMY---D----LIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEECCBC---------------CCTTS-CCCCCEECSSS---S----EEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred cccccccc---------------ccccc-cceEEeccCCC---C----ceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 21100000 00000 00000111000 0 111356678887 888999999999999999
Q ss_pred EEeecc--CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 433 VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~~--h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+..+.+ |...+..++|+|++++|++++ ||.|++||+.+
T Consensus 343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 343 VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999986 457778889999999999997 99999999875
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-41 Score=313.75 Aligned_cols=288 Identities=17% Similarity=0.209 Sum_probs=242.1
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+|...|.+++|+|++++|++++ ||.|++||+.++....... ....|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3457999999999999999999998 9999999998764322222 223677789999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
|+.+++........ +|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++
T Consensus 125 d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 125 DLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp ECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 99887632222211 3555899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
|+ +++++|++++.||.|++||++ ..+.+..+ .+...+.+++|+|++++|++++.++.|++||+++.
T Consensus 191 ~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------- 256 (337)
T 1gxr_A 191 IS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------- 256 (337)
T ss_dssp EC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--------
T ss_pred EC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------
Confidence 98 788999999999999999997 55655554 47789999999999999999999999999999872
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
....+..|... ..++.|+|++++|++++.||.|++||+.+++.+...
T Consensus 257 ---------------------------~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 257 ---------------------------DKYQLHLHESC------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ---------------------------CEEEECCCSSC------EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---------------------------CeEEEcCCccc------eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 22334444422 223367779999999999999999999999888555
Q ss_pred ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 437 ~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.|...|.+++|+|++++|++++.||.|++|++
T Consensus 304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 48899999999999999999999999999996
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.3e-41 Score=306.24 Aligned_cols=251 Identities=19% Similarity=0.266 Sum_probs=213.2
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+|...|.+++|+|++++|++++.||.|++||+.++....... +|..+|.+++|+|++++|++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------------VTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEEEGGGTEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------ccCCcEEEEEEeCCCCEEEEE
Confidence 4667789999999999999999999999999999876543322 355589999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-ceeeEeccccCcEEEEEE
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~~~~ 324 (491)
+.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++|+.|++|++||++ .. .....+.+|...|.+++|
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~----~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG----GTTEEEEEECCCCSCEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC----CCcchhhhhcccCCcEEEEEE
Confidence 999999999999999999999999999999998 788999999999999999997 43 455678899999999999
Q ss_pred cC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 325 RG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 325 ~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+| ++.+|++++.|+.|++||++..... .....++...... ..+.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~---------------------------------~~~~~~~~~~v~~--~~~~ 193 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPN---------------------------------FTLTTGQERGVNY--VDYY 193 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCS---------------------------------EEEECCCTTCEEE--EEEC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCcc---------------------------------ceeccCCcCcEEE--EEEE
Confidence 99 6789999999999999999763311 1111222211111 2222
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
..+++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+.....
T Consensus 194 --~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 194 --PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp --CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred --EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 234788999999999999999999999999999999999999999999999999999999999987653
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-40 Score=332.15 Aligned_cols=287 Identities=24% Similarity=0.381 Sum_probs=249.6
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
+....+.+|...|.+++|+|+|++|++++.|+.|++|+.... .+. ...+|...|.+++|+|++++|++++.|+.|+
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 334567889999999999999999999999999999997643 333 3356778999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
+||......... .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+
T Consensus 329 ~w~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 329 LWNRNGQHLQTL-----------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 390 (577)
T ss_dssp EEETTSCEEEEE-----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEE
T ss_pred EEeCCCCeeEEE-----------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEE
Confidence 999876543221 135568999999999999999999999999995 56777888899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||+..
T Consensus 391 ~~~s-~dg~~l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------- 457 (577)
T 2ymu_A 391 VAFS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------- 457 (577)
T ss_dssp EEEC-TTSSCEEEEETTSEEEEECT-----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-------
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEeC-----CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 9998 88999999999999999996 5677888999999999999999999999999999999999753
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
+.+..+.+|.... .+.+|+|++++|++++.|+.|++||. +++++.
T Consensus 458 ----------------------------~~~~~~~~~~~~v------~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 458 ----------------------------QLLQTLTGHSSSV------RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp ----------------------------CEEEEEECCSSCE------EEEEECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred ----------------------------CEEEEEcCCCCCE------EEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 5666777776432 23367789999999999999999995 788999
Q ss_pred eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.+.+|...|++++|+|++++|++++.||.|++||+..
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 9999999999999999999999999999999999643
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.1e-41 Score=342.75 Aligned_cols=291 Identities=21% Similarity=0.284 Sum_probs=236.2
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
..+.+|.+.|++++|+|++ ++|++|+.|++|++|++.++... .......+|...|.+++|+|++++|++++.|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3578999999999999975 79999999999999999764211 11123457788999999999999999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---eccCCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSD 271 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~ 271 (491)
|||+.++...... .+|...|.+++|+|++++|++|+.|++|++||+......... .+|...
T Consensus 456 vwd~~~~~~~~~~----------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 456 LWDLAAGVSTRRF----------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEETTTTEEEEEE----------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEECCCCcceeEE----------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999887654322 157779999999999999999999999999998765443322 368889
Q ss_pred eeEEEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 272 VNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 272 v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
|.+++|+|.. ...|++++.|++|++||++ ..+....+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-- 593 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-- 593 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT--
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--
Confidence 9999998433 3689999999999999998 77788889999999999999999999999999999999999873
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
..+..+..+.. + .+.+|+|++.+|++++ ++.|++||+.++
T Consensus 594 --------------------------------~~~~~~~~~~~---v----~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 594 --------------------------------KKLYSLEANSV---I----HALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp --------------------------------EEEECCBCSSC---E----EEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred --------------------------------ceEEEecCCCc---E----EEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 23333333221 1 2335677888887765 566999999999
Q ss_pred cEEEeeccCC-------------------CCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 431 EQVAALKYHT-------------------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 431 ~~~~~~~~h~-------------------~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.+..+..+. ..+++++|+|+|++|++|+.||.|++|++.
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 8887765321 137899999999999999999999999985
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-41 Score=320.32 Aligned_cols=293 Identities=12% Similarity=0.109 Sum_probs=242.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe------EEEEEeecCCCceeEEEEEECCC----C---CeE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD----Q---RHL 184 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~sp~----~---~~l 184 (491)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.++. .+... ..|...|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccEE
Confidence 45678999999999999 899999999999999999875 33332 367778999999999 9 999
Q ss_pred EEEECCCeEEEEECCCCccccccccccccccccccccCCCCc-----eecEEEEEEc----CCCCE-EEEEeCCCeEEEE
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDDCIYVY 254 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~~s----~~~~~-l~~~~~dg~i~vw 254 (491)
++++.|+.|++|++.+++......... ..+| ...|.+++|+ |++++ |++++.||.|++|
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEK-----------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEE-----------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEccCCccccccccee-----------ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 999999999999998776411100000 0123 3589999999 99999 9999999999999
Q ss_pred ECCC------CeeeE-----EEe-------ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc--
Q 011179 255 DLEA------NKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-- 314 (491)
Q Consensus 255 d~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 314 (491)
|+.+ ++.+. .+. .|...|.+++|+ +++ +|++++.||.|++||++ ..+.+..+..
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~ 227 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQH 227 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEeccc
Confidence 9998 66655 663 488999999998 677 99999999999999998 6788888888
Q ss_pred -c---cCcEEEEEEcCCCCEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEE
Q 011179 315 -H---LEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 315 -~---~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
| ...|.+++|+|++++|++++.| +.|++||+++. ..+..
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------------~~~~~ 273 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------------ERIGS 273 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------------------------cccce
Confidence 8 9999999999999999999999 99999999873 34444
Q ss_pred EeC-------------CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec------cC---------
Q 011179 388 YKG-------------HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YH--------- 439 (491)
Q Consensus 388 ~~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h--------- 439 (491)
+.+ |.. . ..+++|+|++++|++++.||.|++||+.+++.+..+. .|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~--~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 274 LSVPTHSSQASLGEFAHSS--W----VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp ECBC--------CCBSBSS--C----EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred eccCcccccccccccccCC--c----EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 444 332 1 2334677799999999999999999999999999998 88
Q ss_pred ------CCCeeeeEecCCC----------CeEEEEeCCCcEEEEcCCCC
Q 011179 440 ------TSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 440 ------~~~v~~~~~sp~~----------~~l~s~~~Dg~v~iw~~~~~ 472 (491)
..+|++++|+|++ ++|++++.||.|++|++.++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999998765
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-40 Score=301.32 Aligned_cols=293 Identities=16% Similarity=0.187 Sum_probs=245.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|.+.|.+++| |++++|++|+.||.|++||+.++...... ..|...|.+++|+|++++|++++.|+.|++|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4567899999999999 99999999999999999999887555443 3456689999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
++........... ..+|...|.+++| ++++|++++.|+.|++|| .++....+..|...+.+++
T Consensus 87 ~~~~~~~~~~~~~-------------~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 87 PLFATSGEDPLYT-------------LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp ETTCCTTSCC-CE-------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred EeeecCCCCcccc-------------hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 9976543221111 1246678999999 577999999999999999 6777888889999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|.+++++++++++.||.|++||. ......+.. |...+.+++|+|++. +++++.|+.|++||+++
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-------- 214 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQN------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-------- 214 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEET------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT--------
T ss_pred EccCCCCEEEEEECCCCEEEEec------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc--------
Confidence 99779999999999999999994 345556666 899999999999998 99999999999999987
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
...+..+.+|.... .+.+|+|++ .|++++.||.|++||+.+++.+..
T Consensus 215 --------------------------~~~~~~~~~~~~~i------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 215 --------------------------GDVLRTYEGHESFV------YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp --------------------------CCEEEEEECCSSCE------EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred --------------------------hhhhhhhhcCCceE------EEEEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence 35666777666332 233566788 588999999999999999999999
Q ss_pred eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCC
Q 011179 436 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 436 ~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~ 479 (491)
+..|...|.+++|+|+++ +++++.||.|++|++..+.......
T Consensus 262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999999999999999998 6679999999999998876554433
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.1e-41 Score=315.81 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=242.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
.+..|.++|++++|+|+|++|++|+.|+.|++||+.+++. ........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 3456899999999999999999999999999999998851 122233467779999999999999999999999999999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEE-eccCCCeeE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTSDVNT 274 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~h~~~v~~ 274 (491)
.+++....... .+|...|.+++|+|++++|++++.|+.|++||+..+.. ...+ ..|...|.+
T Consensus 82 ~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 82 KGRTWKPTLVI--------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTEEEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred CCCeeeeeEEe--------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 87764332221 13556899999999999999999999999999988763 2333 468999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccc--------------cCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcE
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCL--------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i 340 (491)
++|+ +++++|++++.||.|++||++.. ......+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9998 78899999999999999996421 11456777888999999999999999999999999999
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCC
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg 420 (491)
++||+++ ...+..+..+... + .+++|+|++++|++| .|+
T Consensus 227 ~i~d~~~----------------------------------~~~~~~~~~~~~~--v----~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 227 CLADADK----------------------------------KMAVATLASETLP--L----LAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp EEEEGGG----------------------------------TTEEEEEECSSCC--E----EEEEEEETTEEEEEE-TTS
T ss_pred EEEECCC----------------------------------CceeEEEccCCCC--e----EEEEEecCCCEEEEE-eCC
Confidence 9999987 3566666666532 2 223566689988888 899
Q ss_pred eEEEEECCC--CcE--------------------------------E------Eee-ccCCCCeeeeEec-CCC---CeE
Q 011179 421 CVYVYDLVS--GEQ--------------------------------V------AAL-KYHTSPVRDCSWH-PSQ---PML 455 (491)
Q Consensus 421 ~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~v~~~~~s-p~~---~~l 455 (491)
.|++|++.+ ++. . ..+ .+|..+|++++|+ ++| .+|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 421 0 233 4899999999976 666 899
Q ss_pred EEEeCCCcEEEEcCCCCC
Q 011179 456 VSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 456 ~s~~~Dg~v~iw~~~~~~ 473 (491)
+|++.||.|++|++...+
T Consensus 346 ~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEETTSEEEEEEHHHHH
T ss_pred EEecCCCceEEEEecChh
Confidence 999999999999987654
No 29
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=320.59 Aligned_cols=317 Identities=17% Similarity=0.188 Sum_probs=242.8
Q ss_pred ccccCCCCCCccccCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEee----------cCCCceeEEEEE
Q 011179 108 LSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AKSLRWTVTDTS 176 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~ 176 (491)
+...-.......+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........ ...|...|.+++
T Consensus 27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence 333334444566788999999999999 999999999999999999987633222111 134778999999
Q ss_pred ECC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEE
Q 011179 177 LSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIY 252 (491)
Q Consensus 177 ~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~dg~i~ 252 (491)
|+| ++.+|++++.|+.|++||+.+++....... ...+.++.|++. +.++++++.++.|+
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----------------SSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-----------------CCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 999 778999999999999999998876544432 227888999884 45999999999999
Q ss_pred EEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC------------CceeeEeccccCcEE
Q 011179 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------------GKPAGVLMGHLEGIT 320 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~i~ 320 (491)
+||+.+++.+..+..|...|.+++|+|....+|++++.||.|++||++..... .........|...|.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 99999999999999999999999998443447999999999999999732200 011112257889999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
+++|+|++++|++++.|+.|++||+++......... +.........
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 295 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----------------------------------KVCNNSKKGL 295 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----------------------------------CCCCCCSSCC
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----------------------------------cccccccccc
Confidence 999999999999999999999999988543221100 0000000000
Q ss_pred EecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
.+.... ..+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++...+...
T Consensus 296 ~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 296 KFTVSC-GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CCEECC-SSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred eeEEec-CCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 011111 234567777889999999999999999999999999999999999999999999999999998876543
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.7e-41 Score=314.77 Aligned_cols=302 Identities=18% Similarity=0.219 Sum_probs=240.6
Q ss_pred ccCCCCceEEEEEcCC----CCEEEEEEcCCeEEEEECCCCeEEEEEee--cCCCceeEEEEEECCC----CCeEEEEEC
Q 011179 120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPD----QRHLVYASM 189 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~d----g~~la~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~sp~----~~~l~~~~~ 189 (491)
..+|.++|++++|+|+ ...+++++.++.|++||+.++..+..... ...|...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3589999999999994 45677777788999999997755544332 2236678999999999 679999999
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE---
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI--- 265 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--- 265 (491)
||.|++||+.+++...... +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9999999999876543321 3666999999999 9999999999999999999999998888
Q ss_pred eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceee----------------------------EeccccC
Q 011179 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG----------------------------VLMGHLE 317 (491)
Q Consensus 266 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~ 317 (491)
..|...|.+++|+ +++++|++++.||.|++||++ ..+... ....|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESC----SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECC----CCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999998 789999999999999999997 333322 2233899
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee
Q 011179 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.|.+++|+ +++|++++.|+.|++||+++........... ......+..+.+|...
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~--- 287 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS--------------------ESNVTILGRFDYSQCD--- 287 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT--------------------CCCEEEEEEEECSSCC---
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC--------------------CcchheeccccccCCc---
Confidence 99999998 6799999999999999998754322110000 0001234555555422
Q ss_pred EEEEecccccCC--CcEEEEEecCCeEEEEECCCCc----EEEeeccC--CCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 398 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGE----QVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 398 ~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
....+|+|+ +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+
T Consensus 288 ---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 288 ---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 234567778 9999999999999999999875 44467777 799999999999999999999999999998
Q ss_pred C
Q 011179 470 P 470 (491)
Q Consensus 470 ~ 470 (491)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-40 Score=315.23 Aligned_cols=288 Identities=18% Similarity=0.248 Sum_probs=237.5
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEEC----CCCe------EEEEEee-cC------CCceeEEEEEECCCCC
Q 011179 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV----ERGW------KIQKDIL-AK------SLRWTVTDTSLSPDQR 182 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~----~~~~------~~~~~~~-~~------~~~~~v~~~~~sp~~~ 182 (491)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .++. ....... .. .|...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45679999999999999 9999999999999999 8775 2222221 11 1566899999999999
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
+|++++.|+.|++|+. ++...... .+|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVL----------------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEE----------------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeec----------------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 9999999999999993 33332211 136668999999999999999999999999999876544
Q ss_pred E--------------------------------------------------------EEeccCCCeeEEEEecCCCCEEE
Q 011179 263 L--------------------------------------------------------RILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 263 ~--------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
. .+..|...|.+++|+ +++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence 3 233577889999998 7889999
Q ss_pred EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
+++.|+.|++||++ ....+..+..|...|.+++|+|++ ++++++.|+.|++||+++
T Consensus 264 ~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~------------------- 319 (425)
T 1r5m_A 264 SASDDGTLRIWHGG----NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ------------------- 319 (425)
T ss_dssp EEETTSCEEEECSS----SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-------------------
T ss_pred EEcCCCEEEEEECC----CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence 99999999999998 677788888899999999999999 999999999999999987
Q ss_pred eecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc---------------
Q 011179 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------------- 431 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 431 (491)
...+..+..|.... .+++|+|++++|++++.||.|++||+.+++
T Consensus 320 ---------------~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 320 ---------------NTLLALSIVDGVPI------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp ---------------TEEEEEEECTTCCE------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred ---------------CcEeEecccCCccE------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 34555666655322 233677799999999999999999999888
Q ss_pred -----EEEeeccCCC--CeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 432 -----QVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 432 -----~~~~~~~h~~--~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.+..+..|.. .|++++|+|++++|++++.||.|++|+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999976 999999999999999999999999999863
No 32
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-39 Score=311.05 Aligned_cols=302 Identities=18% Similarity=0.227 Sum_probs=243.1
Q ss_pred ccCCCCCCccccCC----CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 110 RYLPVNGPWPVDQT----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 110 ~~~~~~~~~~~~~h----~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
+.+|..+...+++- .-.++.++||++ ++||+|. |++|+|||..+++.... .....|...|++++|+|+|++|+
T Consensus 87 r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 87 RYIPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCCEEE
Confidence 34454444444432 234678999976 5788775 89999999999965544 44567777899999999999999
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEE
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLR 264 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~ 264 (491)
+|+.|+.|+|||+.+++...... +|...+.++.++ +..|++|+.|+.+++||.... ..+..
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred EEECCCeEEEEEcCCCcEEEEEe----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE
Confidence 99999999999999887644322 466688888775 679999999999999999864 45567
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-EEEE--eeCCCcEE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLIS--NGKDQAIK 341 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s--~~~dg~i~ 341 (491)
+.+|...+..+.++ ++++++++++.|+.+++|+..........+.....|...|.+++|+|++. ++++ |+.|+.|+
T Consensus 226 ~~~h~~~~~~~~~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 226 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred ecccccceeeeeec-CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 88999999999997 88999999999999999999855444556777888999999999999765 4444 45799999
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe--cC
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 419 (491)
+||+.+ +..+..+..+.... +..++++++.+++++ .|
T Consensus 305 iwd~~t----------------------------------~~~~~~~~~~~~v~-------~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 305 IWNVCS----------------------------------GACLSAVDAHSQVC-------SILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp EEETTT----------------------------------TEEEEEEECSSCEE-------EEEEETTTTEEEEEECTTT
T ss_pred EEeCCc----------------------------------cccceeecccccee-------eeeecCCCCeEEEEEecCC
Confidence 999987 34555555554322 224566888887765 68
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+.|+|||+.+++++..+.+|.+.|++++|+|||++|+||+.||+|+|||+....+
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999999999976543
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-40 Score=314.63 Aligned_cols=252 Identities=21% Similarity=0.360 Sum_probs=218.8
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
.+|..+|++++|+|++.+|++|+.|+.|++||+.+++..... .+|...|.+++|+|++++|++|
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l----------------~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL----------------KGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE----------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------------eccCCcEEEEEEcCCCCEEEEE
Confidence 478889999999999999999999999999999988754332 2577799999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
+.|++|++||+.+++++..+.+|...|.+++|+ +++++|++|+.|++|++||++ .+.++..+.+|...|.++.++
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEC
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEEC
Confidence 999999999999999999999999999999998 789999999999999999998 778888999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|++.+|++++.|+.|++||+++. .....+.+|..... .+.|+|.
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~----------------------------------~~~~~~~~h~~~v~--~~~~~~~ 287 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATK----------------------------------ECKAELREHRHVVE--CISWAPE 287 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCCSSCEE--EEEECCS
T ss_pred CCCCEEEEEcCCCeEEEEECCCC----------------------------------ceeeEecCCCceEE--EEEEcCc
Confidence 99999999999999999999873 33444445443222 2222221
Q ss_pred ----------------ccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 406 ----------------YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 406 ----------------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
....+.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 1113789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011179 470 PGNGE 474 (491)
Q Consensus 470 ~~~~~ 474 (491)
..+..
T Consensus 368 ~~~~~ 372 (410)
T 1vyh_C 368 KNKRC 372 (410)
T ss_dssp TTSCC
T ss_pred CCCce
Confidence 77654
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-41 Score=326.14 Aligned_cols=324 Identities=14% Similarity=0.206 Sum_probs=239.2
Q ss_pred ccc-cCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 118 WPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 118 ~~~-~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........ ..|...|.+++|+|++++|++++.|+.
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-EECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 445 78999999999999 999999999999999999876 421111111 136778999999999999999999999
Q ss_pred EEEEECC---CCccccccccccccccccccccCCCCceecEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 011179 193 VHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 193 i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
|++||+. +++........ ....+.+... ++...+.++. +++++++|++++.|+.|++||+.+++.+..+..
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEeccccCCceeeccccc-eeEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999995 44433222211 1111111110 1334677777 668999999999999999999999999999987
Q ss_pred --cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-cccCcEEEEEEc----CCCCEEEEeeCCCcE
Q 011179 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSR----GDGRYLISNGKDQAI 340 (491)
Q Consensus 268 --h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~s~~~dg~i 340 (491)
|...|++++|+ +++++|++|+.||.|++||++ .+.++..+. .|...|++++|+ |++.+|++++.|+.|
T Consensus 211 ~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 211 SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 89999999997 789999999999999999998 677777775 788899999665 568899999999999
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC--CceeEeeEEEEecccccCCCcEEEEEec
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
++||+++.......... ...+....+.+....+... .+.+ |.. . ..+.+|+ ++++|++|+.
T Consensus 286 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~------~~~~~~~~~--~----v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINS----DEQPSMEHFLPIEKGLEEL------NFCGIRSLN--A----LSTISVS-NDKILLTDEA 348 (437)
T ss_dssp EEEETTTTEEEEEEESS----SSCCCGGGGSCBCSSGGGC------CCCCCCSGG--G----GCCEEEE-TTEEEEEEGG
T ss_pred EEEEcCCCcEEEEEEcC----CCCCccceecccccccccc------eecccccCC--c----eEEEEEC-CceEEEecCC
Confidence 99999875432221110 0001111122222111000 0112 221 1 1233455 6799999999
Q ss_pred CCeEEEEECCCCcEEEeecc-------------------------------------CCCCeeeeEecCC--CCeEEEEe
Q 011179 419 DSCVYVYDLVSGEQVAALKY-------------------------------------HTSPVRDCSWHPS--QPMLVSSS 459 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~~~~sp~--~~~l~s~~ 459 (491)
||.|++||+.+++.+..+.+ |...|++++|+++ +.+|++|+
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999999887766654 8899999999998 77999999
Q ss_pred CCCcEEEEc
Q 011179 460 WDGDVVRWE 468 (491)
Q Consensus 460 ~Dg~v~iw~ 468 (491)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 35
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-40 Score=312.86 Aligned_cols=306 Identities=12% Similarity=0.066 Sum_probs=221.3
Q ss_pred CCceEEEEEcCCCCEEEEEEcCC-------eEEEEECCCCe-------EEEEEeecCCCceeEEEEEECCCCCeEEEEE-
Q 011179 124 TSRAYVSQFSADGSLFVAGFQAS-------QIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg-------~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~- 188 (491)
.-+|+|++|+|||++|++|+.+. .|++|++..+. ..........|...|.++++ +++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 45899999999999999997543 59999987652 11122334566667877766 455666654
Q ss_pred ----------CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 011179 189 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL 256 (491)
Q Consensus 189 ----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~ 256 (491)
.|+.+++|++.+........ ... .......+...+.+++|+|||+++++++ .|++|+|||+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFL--TSV-----DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEE--EEE-----CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEe--eee-----ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 46789999886543211110 000 0011122334688999999999887554 6899999999
Q ss_pred CCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCcee--eEeccccCcEEEEEEcCCCCEEEEe
Q 011179 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 257 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
.+++++..+ .|...|.+++|+ |+++++++++.++. ++|+.. .+..+ .....|...|.+++|+|++++++++
T Consensus 165 ~~~~~~~~~-~~~~~V~~v~fs-pdg~~l~s~s~~~~-~~~~~~----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 165 SDLTEKFEI-ETRGEVKDLHFS-TDGKVVAYITGSSL-EVISTV----TGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp TTTEEEEEE-ECSSCCCEEEEC-TTSSEEEEECSSCE-EEEETT----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEe-CCCCceEEEEEc-cCCceEEeccceeE-EEEEec----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999998887 478899999998 88999999986655 455544 33333 3345688899999999999999999
Q ss_pred eCCC----cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 335 GKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 335 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
+.|+ .+++|++....... .....+.+|... ..+.+|||+|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~------V~~~~~Spdg 281 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRFKG------ITSMDVDMKG 281 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSCSC------EEEEEECTTS
T ss_pred ecCCcceeEEeecccccceecc------------------------------eeeeeecCCCCC------eEeEEECCCC
Confidence 9887 57888876522100 112334444422 2344678899
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEee-ccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCCc
Q 011179 411 KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK 481 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~ 481 (491)
++||+|+.|+.|+|||+.+++++..+ ++|..+|++++|+|||++||||+.|++|+||+++.+........+
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~ 353 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQ 353 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC------
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccc
Confidence 99999999999999999999999875 799999999999999999999999999999999876554443333
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-41 Score=321.47 Aligned_cols=299 Identities=14% Similarity=0.215 Sum_probs=244.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw 196 (491)
..|...|.+++|+|++++|++|+.||.|++||+.+ +.. .......|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN--SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC--EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc--chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 46889999999999999999999999999999987 221 22344577889999999998 8999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------C
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------T 269 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~ 269 (491)
|+.+++....... .+......+|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..| .
T Consensus 142 d~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 142 DMNKCTESPSNYT-------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp BTTTTSSCTTTCC-------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred ECCCCcccccccc-------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 9988762110000 0000112357779999999998 789999999999999999999998888776 7
Q ss_pred CCeeEEEEecCCCCEEEEEeCCC---eEEEEecccccCCC-ceeeEec-cccCcEEEEEEcC-CCCEEEEeeCCCcEEEE
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKG-KPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAIKLW 343 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iw 343 (491)
..|.+++|+|.+..+|++++.|+ .|++||++ .. .++..+. +|...|++++|+| ++++|++++.|+.|++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 89999999854457999999999 99999998 43 5666777 8999999999999 99999999999999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC-cEEEEEecCCeE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCV 422 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i 422 (491)
|+++ ...+..+.+|... ..+++|+|++ .+|++++.||.|
T Consensus 291 d~~~----------------------------------~~~~~~~~~~~~~------v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 291 NPES----------------------------------AEQLSQFPARGNW------CFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CSSS----------------------------------CCEEEEEECSSSC------CCCEEECTTCTTEEEECCSSSEE
T ss_pred eCCC----------------------------------CccceeecCCCCc------eEEEEECCCCCCEEEEEecCCcE
Confidence 9987 3566677776632 2334677788 899999999999
Q ss_pred EEEECCCCcEEEeec-----------------------------------cCCCCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 423 YVYDLVSGEQVAALK-----------------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~-----------------------------------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
++||+.++....... .|..++.+++|+|+|++|++++.||.|+||
T Consensus 331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 999998765332211 167788899999999999999999999999
Q ss_pred cCCCC
Q 011179 468 EFPGN 472 (491)
Q Consensus 468 ~~~~~ 472 (491)
++..+
T Consensus 411 ~~~~~ 415 (416)
T 2pm9_A 411 NPKIS 415 (416)
T ss_dssp CCCCC
T ss_pred EeccC
Confidence 99864
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=310.64 Aligned_cols=297 Identities=15% Similarity=0.189 Sum_probs=233.9
Q ss_pred cccCCCCceEEEEEcCCCCEEE-EEEc---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC---CCeEEEEECCC
Q 011179 119 PVDQTTSRAYVSQFSADGSLFV-AGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSP 191 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la-~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~ 191 (491)
.+.+|...|++++|+|++..++ +|+. ||.|+|||+.++....... ..|...|.+++|+|+ +++|++++.|+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee--ecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 4467999999999999996554 5555 8999999999886544332 245668999999999 69999999999
Q ss_pred eEEEEECCCCc-cccccccccccccccccccCCCCceecEEEEE------EcCCCCEEEEEeCCCeEEEEECCCCe-eeE
Q 011179 192 IVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK------FSTDGRELVAGSSDDCIYVYDLEANK-LSL 263 (491)
Q Consensus 192 ~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~------~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~ 263 (491)
.|++||+.+++ ..... .+|...|.++. |+|++++|++++.||.|++||+.+++ .+.
T Consensus 91 ~i~iwd~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV----------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CEEEECTTSCSSCSEEE----------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred eEEEEeCCCCCccEEEE----------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 99999998876 22211 24667899995 57899999999999999999999887 677
Q ss_pred EEeccCC----CeeEEEEe---cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC---CCCEEEE
Q 011179 264 RILAHTS----DVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLIS 333 (491)
Q Consensus 264 ~~~~h~~----~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s 333 (491)
.+..|.+ .+.+++|. .+++++|++++.||.|++||++ .... .....|...|.+++|+| ++.+|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 7766554 89999842 2789999999999999999997 4444 34467889999999999 9999999
Q ss_pred eeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc-E
Q 011179 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-Y 412 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 412 (491)
++.||.|++||+++...... .....+.+|... ..+..|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~~~~~~~~~------v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKG-----------------------------FASVSEKAHKST------VWQVRHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTE-----------------------------EEEEEEECCSSC------EEEEEEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccc-----------------------------eeeeccCCCcCC------EEEEEECCCCCcE
Confidence 99999999999986432111 011123344422 22335667888 8
Q ss_pred EEEEecCCeEEEEECCCC-------------------cEEEeeccCCCCeeeeEecCCCCeEE-EEeCCCcEEEEcCCCC
Q 011179 413 IYTGSHDSCVYVYDLVSG-------------------EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 472 (491)
Q Consensus 413 l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~sp~~~~l~-s~~~Dg~v~iw~~~~~ 472 (491)
|++++.||.|++||+.++ +.+..+.+|..+|++++|+|++++|+ +++.||.|++|++...
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999999754 45677889999999999999999998 8999999999999765
Q ss_pred C
Q 011179 473 G 473 (491)
Q Consensus 473 ~ 473 (491)
.
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 38
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=292.59 Aligned_cols=301 Identities=17% Similarity=0.209 Sum_probs=237.0
Q ss_pred ccCCCCCCccccC--CCC--ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 110 RYLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 110 ~~~~~~~~~~~~~--h~~--~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
|++|..+...|++ +.. ..++|+||+++ +||+| .|++|+|||+.+++.+... ..+.|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCCEEE
Confidence 5566665555543 222 35789999986 77776 5999999999999766543 4567777899999999999999
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEE
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLR 264 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~ 264 (491)
+|+.|+.|++|++.+++...... +|...+.++.+ ++..+++++.++.+++|+..... .+..
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~----------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT 145 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred EEECCCcEEEeecCCceeEEEec----------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE
Confidence 99999999999999887644322 35556665554 56799999999999999998764 4566
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEE---EEeeCCCcEE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL---ISNGKDQAIK 341 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~s~~~dg~i~ 341 (491)
+.+|...+..+.+. +++++|++++.|+.|++||++..............+...|.++.++|++..+ ++++.++.|+
T Consensus 146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 77999999999997 8899999999999999999985544445566677788999999999976643 4667889999
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe--cC
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 419 (491)
+||.+.. ........... +... .++|+++.+++++ .|
T Consensus 225 lwd~~~~----------------------------------~~~~~~~~~~~---v~~~----~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 225 IWNVCSG----------------------------------ACLSAVDAHSQ---VCSI----LWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EEETTTC----------------------------------CEEEEEECSSC---EEEE----EEETTTTEEEEEECTTT
T ss_pred EEecccc----------------------------------cccccccceee---eeee----eecccccceEEEEEcCC
Confidence 9999873 22222222221 1122 4455777776654 79
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|+|||+...+
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999997643
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=309.60 Aligned_cols=303 Identities=20% Similarity=0.235 Sum_probs=238.5
Q ss_pred ccCCCCCCcccc--CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 110 RYLPVNGPWPVD--QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~--~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
+.+|..+...+. +|...+++.++++++..+++++.||.|++||+.++....... ..|...|.+++|+|++++|+++
T Consensus 75 r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~ 152 (401)
T 4aez_A 75 RRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVG 152 (401)
T ss_dssp CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEE
T ss_pred CcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEE
Confidence 333444444443 666655444343334568888899999999999986655433 3367789999999999999999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEe
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL 266 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~ 266 (491)
+.||.|++||+.+++...... +|...|.+++| ++++|++++.||.|++||+. ....+..+.
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMA----------------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CCCCeEEEEECcCCeEEEEec----------------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 999999999998876543322 46668999999 46799999999999999998 566778888
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-EEEEee--CCCcEEEE
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLW 343 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--~dg~i~iw 343 (491)
+|...|.+++|+ +++++|++|+.|+.|++||++ ....+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 215 ~~~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 215 GHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred CCCCCeeEEEEc-CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 999999999998 689999999999999999998 6778888889999999999999765 555554 79999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE--EecCCe
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSC 421 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~ 421 (491)
|+++. ..+..+..+.. ..+++|+|+++++++ |+.||.
T Consensus 290 d~~~~----------------------------------~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 290 NAATG----------------------------------ARVNTVDAGSQ-------VTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp ETTTC----------------------------------CEEEEEECSSC-------EEEEEECSSSSEEEEEECTTTCE
T ss_pred ECCCC----------------------------------CEEEEEeCCCc-------EEEEEECCCCCeEEEEeecCCCc
Confidence 99873 44555543332 233367779999999 448999
Q ss_pred EEEEECCCCcEEE--eeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCC
Q 011179 422 VYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 478 (491)
Q Consensus 422 i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~ 478 (491)
|++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++..++.....
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999865544 46789999999999999999999999999999999988765543
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=298.97 Aligned_cols=251 Identities=22% Similarity=0.278 Sum_probs=220.1
Q ss_pred ecCCCceeEEEEEECCC----CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC
Q 011179 164 LAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~ 239 (491)
...+|...|.+++|+|+ +.+|++|+.|++|+||++.++....... ..+|...|.+++|++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~--------------l~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--------------LEGHQLGVVSVDISHTL 92 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE--------------ECCCSSCEEEEEECSSS
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee--------------eccCCCCEEEEEECCCC
Confidence 34678889999999985 5689999999999999987665322211 13677899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcE
Q 011179 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
.++++++.|+.|++||+.+++.+..+..|...+.+++|+ |++++|++|+.||.|++||++ .+.....+..|...|
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~----~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVE----SGKKEYSLDTRGKFI 167 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETT----TCSEEEEEECSSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcC----CCceeEEecCCCceE
Confidence 999999999999999999999999999999999999998 889999999999999999998 677778888899999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
.+++|+|++++|++++.|+.|++||+++ ++.+..+.+|....
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~----------------------------------~~~~~~~~~h~~~v---- 209 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIAT----------------------------------GKLLHTLEGHAMPI---- 209 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCC----
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------------CcEEEEEcccCCce----
Confidence 9999999999999999999999999987 35666777766322
Q ss_pred EEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+..+.
T Consensus 210 --~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 210 --RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 233677899999999999999999999999999999999999999999999999999999999999998764
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=319.23 Aligned_cols=297 Identities=15% Similarity=0.248 Sum_probs=240.6
Q ss_pred CCceEEEEEcCCCC-EEEEE----------EcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe
Q 011179 124 TSRAYVSQFSADGS-LFVAG----------FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 124 ~~~i~~~~~s~dg~-~la~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 192 (491)
..+|.+++|+|+|+ +|++| +.|+.|+|||+.++..... .....|...|.+++|+|++++|++++.|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 34788999999997 99999 8899999999988642211 222346678999999999999999999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------eeEE-
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK------LSLR- 264 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~------~~~~- 264 (491)
|++|++.+...... .. ....+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 91 v~vw~~~~~~~~~~-~~-----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 91 LELYSTNEANNAIN-SM-----------ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp EEEECCSSTTSCCC-EE-----------EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred EEEeeccccccccc-ch-----------hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 99999987211000 00 011257779999999998 8999999999999999999876 3332
Q ss_pred --EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc------cCcEEEEEEcCCC-CEEEEee
Q 011179 265 --ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDG-RYLISNG 335 (491)
Q Consensus 265 --~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~s~~ 335 (491)
+..|...|.+++|+|..+.+|++++.|+.|++||++ ..+.+..+..+ ...|.+++|+|++ .+|++++
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 357899999999985448999999999999999998 66777777766 7889999999997 6899999
Q ss_pred CCC---cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEeeEEEEecccccC-CC
Q 011179 336 KDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYST-GQ 410 (491)
Q Consensus 336 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-~~ 410 (491)
.|+ .|++||+++.. ..+..+. +|... ..+++|+| ++
T Consensus 235 ~d~~~~~i~~~d~~~~~---------------------------------~~~~~~~~~~~~~------v~~~~~s~~~~ 275 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNAN---------------------------------TPLQTLNQGHQKG------ILSLDWCHQDE 275 (416)
T ss_dssp CCSSSCCCCEEETTSTT---------------------------------SCSBCCCSCCSSC------EEEEEECSSCS
T ss_pred CCCCCceEEEEeCCCCC---------------------------------CCcEEeecCccCc------eeEEEeCCCCC
Confidence 998 99999998742 1222233 33321 22335677 89
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCC-CeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
++|++++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++|++.......
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 999999999999999999999999999999999999999999 799999999999999998876543
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=299.69 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=206.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEE-eecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
..|...|.+++|+|++ .|++|+.||+|+|||+.+++.+... ....+|...|++++|+|++++|++++.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 4567889999999996 6889999999999999987544332 2345788899999999999999999999999999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVC 276 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~ 276 (491)
+++..... .+|...|.+++|++++. +|++++.|+.|++||+.+++....+. .|...+.+++
T Consensus 158 ~~~~~~~~----------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 158 QQVVLSSY----------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp TTEEEEEE----------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred CCcEEEEE----------------cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 88764432 25777999999999884 78999999999999999998877764 4566799999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+|.++++|++|+.||+|++||++ .++++..+.+|...|++++|+|++ ++|++++.|++|+|||+++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------- 289 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------- 289 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------
T ss_pred ecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Confidence 997788999999999999999998 778889999999999999999998 5799999999999999987
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc-EEEEEecCCeEEEEECCCCcE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~ 432 (491)
..+..+.+|... + .+.+|+|+++ +|++++.|++|++|++.+...
T Consensus 290 ---------------------------~~~~~~~~H~~~--V----~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 290 ---------------------------SELFRSQAHRDF--V----RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ---------------------------CEEEEECCCSSC--E----EEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ---------------------------CcEEEEcCCCCC--E----EEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 344556777643 2 3335666775 677999999999999976543
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-39 Score=299.38 Aligned_cols=291 Identities=20% Similarity=0.265 Sum_probs=240.9
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
+.++|.+++|+|||++++++..++.+.+|......... ....|...|.+++|+|++++|++++ |+.|++|++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 46789999999999999998888877777655532222 2236778999999999999999998 9999999998765
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEecC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~ 280 (491)
......... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ +
T Consensus 84 ~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~ 151 (337)
T 1gxr_A 84 NKSPVSQLD-----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-P 151 (337)
T ss_dssp CCSCSEEEE-----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-T
T ss_pred ceeeeeccc-----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-C
Confidence 433222111 11356689999999999999999999999999999887 566777899999999998 7
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++++|++++.||.|++||++ ..+.+..+..|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------ 215 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------ 215 (337)
T ss_dssp TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------
T ss_pred CCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------------
Confidence 89999999999999999998 77888888999999999999999999999999999999999873
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
..+..+..... ..+++|+|++++|++++.++.|++||+.+++.. .+..|.
T Consensus 216 ----------------------~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~ 265 (337)
T 1gxr_A 216 ----------------------RQLQQHDFTSQ-------IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE 265 (337)
T ss_dssp ----------------------EEEEEEECSSC-------EEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred ----------------------ceEeeecCCCc-------eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc
Confidence 33333332211 223467789999999999999999999888764 567899
Q ss_pred CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
..|.+++|+|++++|++++.||.|++|++..+...
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999999999999999999999999876543
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-40 Score=315.89 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=222.2
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
....+.++|++++|+|+|++||+|+.|+.|+|||+.++. .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567899999999999999999999999999999873 1233345678889999999999999999999999999999
Q ss_pred CCCc-cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEec-cCCCee
Q 011179 199 GSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVN 273 (491)
Q Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-h~~~v~ 273 (491)
.++. ...... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+.. |...|.
T Consensus 85 ~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 85 RPDGTWKQTLV--------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp ----CCCCEEE--------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred CCCCceeeeeE--------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 8876 111111 12466799999999999999999999999999999887 3667777 999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccC--------------CCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
+++|+ +++++|++++.|+.|++||++.... .+.++..+ +|...|++++|+|++++|++++.|+.
T Consensus 151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 99998 7899999999999999999852210 23455555 89999999999999999999999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 419 (491)
|++||+++..... ..+..+.+|... + .+++|+|++++|++|+.+
T Consensus 229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~~~--v----~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 229 VTIAYPSAPEQPP------------------------------RALITVKLSQLP--L----RSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EC-CEECSTTSCE------------------------------EECCCEECSSSC--E----EEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCCcc------------------------------eeeEeecCCCCc--e----EEEEEcCCCCEEEEEcCC
Confidence 9999998844210 113444555432 2 233567799999999877
Q ss_pred CeEEEEECCCCc--E-------------------------E---------Eee----------------ccCCCCeeeeE
Q 011179 420 SCVYVYDLVSGE--Q-------------------------V---------AAL----------------KYHTSPVRDCS 447 (491)
Q Consensus 420 g~i~iwd~~~~~--~-------------------------~---------~~~----------------~~h~~~v~~~~ 447 (491)
+.+ +|+..... . . ..+ ..|.+.|++++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR 351 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence 765 66654211 0 0 001 13999999999
Q ss_pred ecCCCC----eEEEEeCCCcEEEEcC
Q 011179 448 WHPSQP----MLVSSSWDGDVVRWEF 469 (491)
Q Consensus 448 ~sp~~~----~l~s~~~Dg~v~iw~~ 469 (491)
+.+... .|+|++.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 776543 5999999999999996
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-38 Score=304.56 Aligned_cols=299 Identities=12% Similarity=0.154 Sum_probs=236.1
Q ss_pred cccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE
Q 011179 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (491)
++.........+..| ..+....|+|++++||+|+.||.|++||+.++.... ....|...|.+++|+|++++|++++
T Consensus 83 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s 158 (420)
T 3vl1_A 83 FNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGEALISSS 158 (420)
T ss_dssp EECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSSEEEEEE
T ss_pred EEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCCEEEEEe
Confidence 333333334445555 555666899999999999999999999999875433 3457888999999999999999999
Q ss_pred CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-
Q 011179 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA- 267 (491)
Q Consensus 189 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 267 (491)
.|+.|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred CCCeEEEEeCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence 99999999999876543221 4667999999999999999999999999999999999888874
Q ss_pred --cCCCeeEEEEe--------------------cCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEE
Q 011179 268 --HTSDVNTVCFG--------------------DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDS 324 (491)
Q Consensus 268 --h~~~v~~~~~~--------------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~ 324 (491)
|...+.+++|. .+++++|++|+.||.|++||++ ....+..+ ..|...|++++|
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT----TCCEEEEECCTTSSCEEEEEE
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC----CCceeEEcccccCCCceeEEE
Confidence 44455555552 1678899999999999999998 55555544 458899999999
Q ss_pred cCCCC-EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC-ceeEeeEEEEe
Q 011179 325 RGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHF 402 (491)
Q Consensus 325 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 402 (491)
+|+++ +|++++.||.|++||+++.. ..+..+.++ ..... ..
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~---------------------------------~~~~~~~~~~~~~v~---~~- 341 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPE---------------------------------CPVGEFLINEGTPIN---NV- 341 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEEESTTSCEE---EE-
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCc---------------------------------CchhhhhccCCCCce---EE-
Confidence 99999 99999999999999998743 223444442 22111 11
Q ss_pred cccccCCCcEEEEEecCCeEEEEECCCCc---------EEEeeccCCCCeeeeEecCCCC---eEEEEeCCCcEEEEcCC
Q 011179 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGE---------QVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~sp~~~---~l~s~~~Dg~v~iw~~~ 470 (491)
+++++++|++++.||.|++||+.... ....+..|.+.|.+++|+|+++ .|++++.+|.+.+|+++
T Consensus 342 ---~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 342 ---YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp ---EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ---EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 22368899999999999999987632 2234557889999999999999 78888899999999987
Q ss_pred C
Q 011179 471 G 471 (491)
Q Consensus 471 ~ 471 (491)
+
T Consensus 419 ~ 419 (420)
T 3vl1_A 419 N 419 (420)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-38 Score=289.61 Aligned_cols=262 Identities=18% Similarity=0.178 Sum_probs=206.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeEEEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~iw 196 (491)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+.. .......+|...|.+++|+|+ +++|++++.|++|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578999999999999999999999999999999975311 112234678889999999874 8999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCe
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV 272 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v 272 (491)
|+.++........ .+|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+.+|...|
T Consensus 83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 9987653222111 246668999999997 8899999999999999998763 245677899999
Q ss_pred eEEEEecC------------CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC---CEEEEeeCC
Q 011179 273 NTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD 337 (491)
Q Consensus 273 ~~~~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~d 337 (491)
.+++|+|. ++++|++|+.|++|++||++...........+.+|...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999843 257999999999999999973221122566788999999999999984 788888889
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
+.|++||++... +...
T Consensus 229 ~~v~iWd~~~~~------------------------------------------------------------~~~~---- 244 (297)
T 2pm7_B 229 RTCIIWTQDNEQ------------------------------------------------------------GPWK---- 244 (297)
T ss_dssp SCEEEEEESSTT------------------------------------------------------------SCCE----
T ss_pred CcEEEEEeCCCC------------------------------------------------------------Cccc----
Confidence 999999876411 0000
Q ss_pred cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
. .+.....|...|.+++|+|++++|++++.||.|++|+....
T Consensus 245 ----~---------~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 245 ----K---------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp ----E---------EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ----e---------eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 0 00001346788999999999999999999999999997643
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=316.32 Aligned_cols=299 Identities=10% Similarity=0.036 Sum_probs=207.0
Q ss_pred CCCceEEEEEcCCC---------CEEEE-------------------EEcCCeEEEEECCCCeEEEE-EeecCCCceeEE
Q 011179 123 TTSRAYVSQFSADG---------SLFVA-------------------GFQASQIRIYDVERGWKIQK-DILAKSLRWTVT 173 (491)
Q Consensus 123 h~~~i~~~~~s~dg---------~~la~-------------------~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~ 173 (491)
+.+.|++++|+|++ ++||+ ++.|++|+||++.+++.... ......|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56777777777775 56665 55788999999987643211 112234556799
Q ss_pred EEEECCC------CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 174 DTSLSPD------QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 174 ~~~~sp~------~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
+++|+|+ +.+||+++.||+|++||+.++......... . .-+.....+|...|.+++|++++ .|++|+.
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~----~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~ 285 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-C----EKPSLTLSLADSLITTFDFLSPT-TVVCGFK 285 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-C----CSCSEEECCTTTCEEEEEESSSS-EEEEEET
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-e----cCceEEEEcCCCCEEEEEecCCC-eEEEEeC
Confidence 9999997 579999999999999999876432100000 0 00000123567799999999865 7999999
Q ss_pred CCeEEEEECCCCe-eeEEEeccCCCeeEE--EEecCCC-CEEEEEeCCCeEEEEecccccCCCceeeEeccccC--cEEE
Q 011179 248 DDCIYVYDLEANK-LSLRILAHTSDVNTV--CFGDESG-HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITF 321 (491)
Q Consensus 248 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~ 321 (491)
||+|++||+.++. +...+.+|...|.++ .| ++++ ++|++|+.|++|+|||++ ..+....+.+|.. .|.+
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~-s~~g~~~laS~S~D~tvklWD~~----~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY-SDFEDTVVSTVAVDGYFYIFNPK----DIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC-CTTSCCEEEEEETTSEEEEECGG----GHHHHCEEEEECSCCSCCC
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEc-CCCCCeEEEEeccCCeEEEEECC----CCCcccccccccccCcccc
Confidence 9999999998764 445678999999999 45 4776 899999999999999998 5566666667754 4789
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
++|+|+++.+++++.|++|++||+++... +.++.+|... +
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~----------------------------------~~~l~gH~~~------V 400 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFA----------------------------------VHPLVSRETT------I 400 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTC----------------------------------CEEEEECSSC------E
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECccccc----------------------------------ceeeecCCCc------e
Confidence 99999999999999999999999988432 2233333321 1
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECC--------------------------------------------CCcEEEeec
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLV--------------------------------------------SGEQVAALK 437 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~--------------------------------------------~~~~~~~~~ 437 (491)
.+.+|||++++|++|+.||+|++||+. ++..+..+.
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID 480 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------------
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec
Confidence 222344455555555555555555421 234455566
Q ss_pred cCCCCeeeeEecCCCC---eEEEEeCCCcEEEEcCCCC
Q 011179 438 YHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 438 ~h~~~v~~~~~sp~~~---~l~s~~~Dg~v~iw~~~~~ 472 (491)
+|...|.+|+|+|+++ +||+|+.||.|+||++...
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 7899999999999965 9999999999999998764
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-38 Score=341.97 Aligned_cols=336 Identities=20% Similarity=0.239 Sum_probs=265.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|.+.|++++|+|+|++||+|+.||+|++||+.++..+... .+|...|.+++|+|++++|++++.|+.|++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe---ccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 3466799999999999999999999999999999999998666543 4778899999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 274 (491)
|+.+++...... +|...|.+++|+| ++.++++|+.|+.|++||+.+++.+..+.+|...|++
T Consensus 685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 999887544322 4666899999999 5568999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCC-------------------------------------------------
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------------------------------------------------- 305 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------------------------- 305 (491)
++|+ +++++|++++.||.|++||++.....
T Consensus 749 ~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 749 CRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 9998 78999999999999999998632100
Q ss_pred -CceeeE-eccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC-CCC
Q 011179 306 -GKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD 382 (491)
Q Consensus 306 -~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (491)
+..... ..+|...|.+++|+|+++++++++.|+.|++||+.+........ .....+..+.+.+++..+.. ..+
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC----CCccceEEEEECCCCCEEEEEeCC
Confidence 001111 12678889999999999999999999999999998754433221 12223444455555443332 233
Q ss_pred ceEEEEeCCc----------------------------------------ee--EeeEEEEecccccCCCcEEEEEecCC
Q 011179 383 QSVATYKGHS----------------------------------------VL--RTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 383 ~~~~~~~~~~----------------------------------------~~--~~~~~~~~~~~~s~~~~~l~~~~~dg 420 (491)
..+..+.... .. ........+.+++|+++++++|+.+|
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 3344433110 00 00001123446888999999999999
Q ss_pred eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+....
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 99999999999999999999999999999999999999999999999998875443
No 49
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.1e-39 Score=301.21 Aligned_cols=283 Identities=14% Similarity=0.155 Sum_probs=197.6
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC------CCeEEEEECCCC
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSG 201 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~i~iw~~~~~ 201 (491)
..+.+.+++.++.+ ..+.....|++... .+..|...|++++|+|||++|++++. |+.|++|+..++
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred cCCCCCccceEEec-CCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC
Confidence 34455666655444 44667889987643 23467889999999999999999997 778999998776
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEE
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCF 277 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~~~~ 277 (491)
.......... .+|...|.+++|+|+++ +++++.||+|+|||+.+++... ...+|...|++++|
T Consensus 81 ~~~~~~~~~~------------~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 81 APNESLCTAG------------VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp --CGGGCSEE------------EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred CcceeEeccc------------CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 5433221111 13556899999999986 6677889999999998876432 34479999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCcccccC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
+ +++++|++|+.|+.|++||++ .++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++......
T Consensus 148 s-pdg~~l~sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--- 219 (357)
T 4g56_B 148 F-SDGTQAVSGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--- 219 (357)
T ss_dssp C-SSSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---
T ss_pred C-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---
Confidence 8 789999999999999999998 7888899999999999999999875 789999999999999987543221
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC-CcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
+..+.....+..+ +|+|+ +.+|++|+.|+.|++||+.+++++..
T Consensus 220 -------------------------------~~~~~~~~~v~~v----~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 220 -------------------------------IDFCASDTIPTSV----TWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp -------------------------------CCCTTCCSCEEEE----EECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred -------------------------------eeeccccccccch----hhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 1111111112222 45555 67899999999999999999999999
Q ss_pred eccCCCCeeeeEecCCC-CeEEEEeCCCcEEEEcCCCCCC
Q 011179 436 LKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 436 ~~~h~~~v~~~~~sp~~-~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+.+|...|++++|+|++ ++|++++.||+|+|||+..++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 99999999999999997 5899999999999999987653
No 50
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=330.33 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=173.2
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
.+|.+.|++++|+|+|++||+|+.||.|+||+..+.+.... ..|...|.+++|+| +++|++++.|+.|++||+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 57899999999999999999999999999999987644332 23566899999999 88999999999999999998
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------EEEeccC
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAHT 269 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~h~ 269 (491)
++...... |...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.
T Consensus 89 ~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 89 QKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp CSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred CcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 76543321 2237999999999999999999999999999988763 1235688
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc------------------cCcEEEEEEcCCCCEE
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------LEGITFIDSRGDGRYL 331 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l 331 (491)
+.|.+++|+|.++..|++|+.||.| +||++ ..+.+..+..| ...|++++|+|+|++|
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 9999999995566899999999999 99998 66666666554 5779999999999999
Q ss_pred EEeeCCCcEEEEeCCCCCC
Q 011179 332 ISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~ 350 (491)
++++.|+.|++||+++.+.
T Consensus 227 asgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEETTCCEEEEETTTCCE
T ss_pred EEEECCCeEEEEECCCCcE
Confidence 9999999999999987654
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-39 Score=309.79 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=228.8
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
.+++++|+|+|++|++++.||.|++||+.++... .....+ ..+....|+|++++|++++.|+.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee---eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 3557899999999999999999999999875321 122233 345566889999999999999999999998776543
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 285 (491)
.. .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|
T Consensus 134 ~~----------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 196 (420)
T 3vl1_A 134 ID----------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV 196 (420)
T ss_dssp ET----------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred ec----------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence 32 2467799999999999999999999999999999999999999999999999998 789999
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEecc---ccCcEEE---------------------EEEcCCCCEEEEeeCCCcEE
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGITF---------------------IDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~~~l~s~~~dg~i~ 341 (491)
++++.|+.|++||++ .++.+..+.. |...+.+ ++|+|++++|++++.||.|+
T Consensus 197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 999999999999998 6666666654 3344444 45578999999999999999
Q ss_pred EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEeeEEEEecccccCCCc-EEEEEecC
Q 011179 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQK-YIYTGSHD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~d 419 (491)
+||+++. ..+..+. .|.. . ..+++|+|+++ +|++|+.|
T Consensus 273 i~d~~~~----------------------------------~~~~~~~~~~~~--~----v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 273 VHNVFSK----------------------------------EQTIQLPSKFTC--S----CNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEETTTC----------------------------------CEEEEECCTTSS--C----EEEEEECSSCTTEEEEEETT
T ss_pred EEECCCC----------------------------------ceeEEcccccCC--C----ceeEEEeCCCCCEEEEEeCC
Confidence 9999873 2333332 2332 1 22335677888 99999999
Q ss_pred CeEEEEECCCCcE-EEeecc-CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 420 SCVYVYDLVSGEQ-VAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 420 g~i~iwd~~~~~~-~~~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
|.|++||+.+++. +..+.. |...|.++.| +++++|++++.||.|++|++......
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCC
Confidence 9999999998754 667765 6677888855 57889999999999999999885443
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.2e-38 Score=327.12 Aligned_cols=294 Identities=18% Similarity=0.243 Sum_probs=251.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
...+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++..+... ..|...|.+++|+|++++|++++.||.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999999998666544 3567789999999999999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~ 275 (491)
|+.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.++
T Consensus 83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 999887543322 36668999999999999999999999999999887 6777888999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc-CcEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCcc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~ 352 (491)
+|+|.+++.|++++.||.|++||+. .......+..+. ..+.+++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9985488999999999999999997 555555555544 8899999999 999999999999999999987
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 432 (491)
+..+..+.+|.... .+++|+|++++|++++.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHMSNV------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCSSCE------EEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCCCCE------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35566666665322 2335777999999999999999999999999
Q ss_pred EEeeccCCCCeeeeEecCCCCe-EEEEeCCCcEEEEcCCCCC
Q 011179 433 VAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~sp~~~~-l~s~~~Dg~v~iw~~~~~~ 473 (491)
+..+..|...+.+++|+|++.. +++++.|+.+.+|++....
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999973 3455557778999987653
No 53
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-37 Score=288.92 Aligned_cols=248 Identities=20% Similarity=0.294 Sum_probs=213.4
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|...|.+++|+|++++|++++.|+.|++||+.+++...... .|...|.+++|+|++++|+
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------CSSSCEEEEEECTTSSEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee----------------cCCccEEEEEECCCCCEEE
Confidence 346788899999999999999999999999999998876543321 2555899999999999999
Q ss_pred EEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcE
Q 011179 244 AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
+|+.|+.|++||+.+. .....+.+|...|.++.|+ +++ .+++++.|++|++||++ .+..+..+.+|...|
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~----~~~~~~~~~~h~~~v 187 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDN-QIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDV 187 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE-ETT-EEEEEETTSCEEEEETT----TTEEEEEECCCSSCE
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC-CCC-cEEEEECCCcEEEEECC----CCcEEEEEcCCCCce
Confidence 9999999999999875 3556677999999999997 444 58899999999999998 778888999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
.+++|+|++++|++++.|+.|++||+++ +..+..+.+|....
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~----------------------------------~~~~~~~~~h~~~v---- 229 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----------------------------------GMCRQTFTGHESDI---- 229 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCSSCE----
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------------CeeEEEEcCCcCCE----
Confidence 9999999999999999999999999987 35666777776432
Q ss_pred EEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc--CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+.+|+|++++|++|+.||.|++||+.+++.+..+.. +...|++++|+|++++|++|+.||.|++||+....
T Consensus 230 --~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 230 --NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp --EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred --EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 2336777999999999999999999999988777652 33579999999999999999999999999987654
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=305.83 Aligned_cols=310 Identities=15% Similarity=0.248 Sum_probs=226.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeE--------EEEEeecCCCc------------eeEEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPDQ 181 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~------------~~v~~~~~sp~~ 181 (491)
.+.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987642 11122334565 679999999998
Q ss_pred --CeEEEEECCCeEEEEECCCCccccccccccccc----------ccccc--------------ccCCCCceecEEEEEE
Q 011179 182 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------GLDFS--------------AADDGGYSFGIFSLKF 235 (491)
Q Consensus 182 --~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~h~~~i~~~~~ 235 (491)
.+|++++.|+.|++|++.++............. .+.++ .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999997654321100000000 00000 0012468889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC-eeeEE-------EeccCCCeeEEEEecCCC-CEEEEEeCCCeEEEEecccccCCC
Q 011179 236 STDGRELVAGSSDDCIYVYDLEAN-KLSLR-------ILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 236 s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~-------~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
+|++++|++| .|+.|++||+.+. +.+.. +..|...|.+++|+ +++ ++|++|+.||.|++||++......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9999999998 7999999999844 33332 45899999999998 565 999999999999999998332222
Q ss_pred ceeeEeccccC------------cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 307 KPAGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 307 ~~~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
..+..+..|.. .|.+++|+|++++|++++. +.|++||++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------------- 317 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------------- 317 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-------------------------
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-------------------------
Confidence 22677777776 8999999999999999999 999999998621
Q ss_pred ccccCCCCceEEEEeCCceeEe---------eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--------
Q 011179 375 RDLKHPCDQSVATYKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------- 437 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 437 (491)
..+..+.+|..... .....+..+|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 318 --------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~ 388 (447)
T 3dw8_B 318 --------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP 388 (447)
T ss_dssp --------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred --------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence 22333444432111 00001234678899999999999999999999987753 22
Q ss_pred -------------------------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 438 -------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 -------------------------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.+...|.+++|+|++++||+++.++ +++|.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345788999999999999998876 777764
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-37 Score=313.56 Aligned_cols=334 Identities=16% Similarity=0.164 Sum_probs=254.5
Q ss_pred CCCccccCCCCc-eEEEEEcC--CCCEEEEEEcCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 115 NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 115 ~~~~~~~~h~~~-i~~~~~s~--dg~~la~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
.....+.+|... |++++|+| +|++||+|+.||.|++||+.++ .. ........|...|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc-cccchhhcccccEEEEEEeCCCCEEE
Confidence 456778899999 99999999 9999999999999999999754 11 12223345677899999999999999
Q ss_pred EEECC----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 011179 186 YASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 186 ~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~ 260 (491)
+++.+ +.|++||. ++.... ..+|...|.+++|+|+++ .+++++.|+.|++||+.+++
T Consensus 133 ~~~~~~~~~~~v~~~d~--~~~~~~----------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDS--GNSLGE----------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp EEECCSSCSEEEEETTT--CCEEEE----------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EeccCCCCccEEEEEEC--CCccee----------------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 99987 68888883 332211 124677999999999998 89999999999999999999
Q ss_pred eeEEEeccCC---CeeEEEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEe-c---cccCcEEEEEEcCCCCEEE
Q 011179 261 LSLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 261 ~~~~~~~h~~---~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~ 332 (491)
.+..+..|.. .|.+++|+ ++ +++|++++.||.|++||++ .++.+..+ . .|...|.+++|+ ++++|+
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred eeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 9999999999 99999998 66 9999999999999999998 77778777 5 899999999999 999999
Q ss_pred EeeCCCcEEEEeCCCCCCcccccCCC-------------------------ccceee-----------------------
Q 011179 333 SNGKDQAIKLWDIRKMSSNASCNLGF-------------------------RSYEWD----------------------- 364 (491)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~----------------------- 364 (491)
+++.|+.|++||+++........... ....|+
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 348 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence 99999999999998754332221110 000000
Q ss_pred --------------------------eeeecCCCCCccccCCC-------------------------------------
Q 011179 365 --------------------------YRWMDYPPQARDLKHPC------------------------------------- 381 (491)
Q Consensus 365 --------------------------~~~~~~~~~~~~~~~~~------------------------------------- 381 (491)
+..+.+++....+....
T Consensus 349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 00111110111110000
Q ss_pred -------------------------------------CceEEEEeCCceeE------eeEEEEecccccCCCcEEEEEec
Q 011179 382 -------------------------------------DQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 382 -------------------------------------~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
+..+..+....... .......+++|+|++++|++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 11111111111000 00011234568899999999999
Q ss_pred CCeEEEEECCCCcEEEeecc-CCCCeeeeEecC----------CCCeEEEEeCCCcEEEEcCCCCC
Q 011179 419 DSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP----------SQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp----------~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
||.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++|++..+.
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999988 999999999999 99999999999999999998864
No 56
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.8e-38 Score=295.62 Aligned_cols=313 Identities=13% Similarity=0.066 Sum_probs=224.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEECC--CCCeEEEEECCCeE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 193 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i 193 (491)
...+.+|.+.|++++|+|+|++||+|+.||.|++||+.++... ........|...|.+++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3556899999999999999999999999999999999875321 22233456778999999999 69999999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEEe-----
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL----- 266 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~----- 266 (491)
++||+.++........... .....+|...|.+++|+|+ +++|++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNK-------LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EEEEECTTSCTTSSCSEEE-------EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EEEecCCCcccccccCcce-------eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 9999987753221100000 0011246679999999999 9999999999999999998876543332
Q ss_pred --------ccCCCeeEEEEecC--CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC----CEEE
Q 011179 267 --------AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLI 332 (491)
Q Consensus 267 --------~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~ 332 (491)
.|...+.+++|+|. ++.++++++.|+.+.+|+.... ....+..+.+|...|++++|+|++ ++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 57889999999843 3899999999999988887511 223367788899999999999998 8999
Q ss_pred EeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcE
Q 011179 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+++.||.|++||++........ .... .........+........
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~~~~~~ 278 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLAS----------------------------------EESL--TNSNMFDNSADVDMDAQG 278 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------------------------------
T ss_pred EEcCCCeEEEEeCCCCcCcccc----------------------------------CCcc--cceeccCCCccccccccc
Confidence 9999999999999864321110 0000 000000011111111112
Q ss_pred EEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 413 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
...+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 22333455677777777888999999999999999999999999999999999999987643
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=291.10 Aligned_cols=258 Identities=16% Similarity=0.197 Sum_probs=211.1
Q ss_pred ecCCCce-eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 164 LAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 164 ~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
...+|.. .|.+++|+|++++|++++.|+.|+||++.++........ ..+|...|.+++|+|++++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------SEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------CSSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------ccccCCcEEEEEECCCCCEE
Confidence 3456665 899999999999999999999999999987653221111 12577799999999999999
Q ss_pred EEEeCCCeEEEEECCCC--eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 243 VAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
++|+.|+.|++||+..+ +.+..+.+|...|.+++|+ +++++|++|+.|++|++||++... ....+..+.+|...|.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeE
Confidence 99999999999999876 4567788999999999998 789999999999999999997321 2245667889999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEE
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
+++|+|++++|++++.|+.|++||++.... .....+.+|...
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--------------------------------~~~~~~~~h~~~------ 196 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDW--------------------------------VCCATLEGHEST------ 196 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEE--------------------------------EEEEEECCCSSC------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCE--------------------------------EEEEEecCCCCc------
Confidence 999999999999999999999999876210 234566677632
Q ss_pred EecccccCCCcEEEEEecCCeEEEEECCCC---------------cEEEeecc-CCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---------------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
..+++|+|++++|++|+.|+.|++||.... +++..+.+ |...|.+++|+|++..|++++.|+.|
T Consensus 197 v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 233467789999999999999999996321 23445544 88999999999999999999999999
Q ss_pred EEEcCCCCCC
Q 011179 465 VRWEFPGNGE 474 (491)
Q Consensus 465 ~iw~~~~~~~ 474 (491)
++|+......
T Consensus 277 ~vw~~~~~~~ 286 (345)
T 3fm0_A 277 RVFQEDPNSD 286 (345)
T ss_dssp EEEEECTTSC
T ss_pred EEEEeCCCCC
Confidence 9999876543
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.3e-38 Score=293.90 Aligned_cols=296 Identities=13% Similarity=0.099 Sum_probs=235.0
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCeEEEEEC
Q 011179 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~ 198 (491)
..+|.+.|++++|+|++++|++++.||.|++|++.++...........|...|.+++|+|+++ +|++++.|+.|++|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 357999999999999999999999999999999988751111222236677899999999999 9999999999999999
Q ss_pred -CCCccccccccccccccccccccCCCC--ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeeeEEEe
Q 011179 199 -GSGTMESLANVTEIHDGLDFSAADDGG--YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL 266 (491)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~ 266 (491)
.++..... .+ |...|.+++|+| +++|++++.|+.|++||+.+ ++++..+.
T Consensus 87 ~~~~~~~~~-----------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 87 IGSPSFQAL-----------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SSSSSEEEC-----------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred ccCCceEec-----------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 87754211 13 666899999999 99999999999999999987 66665554
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccc-ccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEe
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd 344 (491)
|...|.+++|+ +++ +++++.|+.|++||++. .. .........|...+.+++|+| +++++++++.||.|++|+
T Consensus 149 -~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 149 -VKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp -SCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred -eCCceEEEEec-CCc--EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 88999999997 444 99999999999999973 21 223334556888999999999 999999999999999999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE---eeEEEEecccccCCCcEEEEEecCCe
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~dg~ 421 (491)
++....... ......+..|.... .......+.+|+|++++|++++.||.
T Consensus 223 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 223 FDDQGDDYN----------------------------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp CCTTCCSTT----------------------------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred EcCCCcccc----------------------------cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 987410000 03334455443200 00001223367779999999999999
Q ss_pred EEEEECCCCcEEEeeccC-CCCeeeeEecCCCCeEEEEeCCCc-EEEEcC
Q 011179 422 VYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDGD-VVRWEF 469 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~~~Dg~-v~iw~~ 469 (491)
|++||+.+++.+..+.+| ..+|++++ |++++|++++.||. .+.|..
T Consensus 275 i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 275 ISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 999999999999999998 99999999 99999999999998 666664
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-36 Score=296.19 Aligned_cols=286 Identities=21% Similarity=0.281 Sum_probs=241.7
Q ss_pred ccccCCCCce-EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i-~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+.+|...| .|+.| ++++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+|++ +|++++.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4678898885 66666 578999999999999999999865554 35788899999999988 89999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCee-------------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKL------------- 261 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~------------- 261 (491)
|+.+++...... +|...|.+++|+ +++++|++|+.|+.|++||+.++..
T Consensus 189 d~~~~~~~~~~~----------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 189 DIKKGCCTHVFE----------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ETTTTEEEEEEC----------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ECCCCcEEEEEC----------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 999887543321 466799999998 5788999999999999999987653
Q ss_pred ----------eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEE
Q 011179 262 ----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 262 ----------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 331 (491)
+..+.+|...|.++. ++++++++|+.||.|++||++ ..+.+..+.+|...|.+++|+|++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 445668888888884 457899999999999999998 788889999999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc
Q 011179 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++++.|+.|++||+++ +..+..+.+|......+ .+ +++
T Consensus 326 ~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~--~~~ 363 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RL--SDK 363 (464)
T ss_dssp EEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE------EE--CSS
T ss_pred EEEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE------EE--cCC
Confidence 9999999999999987 46677777776543322 22 368
Q ss_pred EEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCC
Q 011179 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 412 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~ 476 (491)
+|++++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+..++...
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 99999999999999999988776664 677888999999999999998 8999999999876543
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.3e-37 Score=297.62 Aligned_cols=284 Identities=26% Similarity=0.394 Sum_probs=232.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
.+|...|+|++| ++++|++|+.||.|++||+.+++.... ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 456778999887 789999999999999999999866554 3567789999999 789999999999999999998
Q ss_pred CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EEEeccCCCeeEEEE
Q 011179 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCF 277 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~ 277 (491)
++...... +|...|.+++|++ .++++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 203 ~~~~~~~~----------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 203 GEMLNTLI----------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp CCEEEEEC----------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEEc----------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 87543321 4666899999974 58999999999999999987755 567789999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
++++|++|+.||.|++||++ .+..+..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~---------- 325 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---------- 325 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----------
T ss_pred ---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC----------
Confidence 46899999999999999998 778888999999999999994 67999999999999999987
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc------
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------ 431 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 431 (491)
+..+..+.+|......+ .+ ++++|++|+.||.|++||+.+++
T Consensus 326 ------------------------~~~~~~~~~h~~~v~~~------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 373 (435)
T 1p22_A 326 ------------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373 (435)
T ss_dssp ------------------------CCEEEEECCCSSCEEEE------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred ------------------------CCEEEEEeCCcCcEEEE------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence 45667777776433322 22 78899999999999999998776
Q ss_pred ---EEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCCCCCCCcc
Q 011179 432 ---QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 482 (491)
Q Consensus 432 ---~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~ 482 (491)
++..+.+|.+.|++++| ++.+|++++.||.|++||+.............
T Consensus 374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 425 (435)
T 1p22_A 374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRS 425 (435)
T ss_dssp TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------------
T ss_pred cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCC
Confidence 88889999999999999 78899999999999999998876554443333
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=290.74 Aligned_cols=306 Identities=13% Similarity=0.092 Sum_probs=238.8
Q ss_pred cCCCCCCccccCCCCceEEEEEcCC---CCEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCCCeEEE
Q 011179 111 YLPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~i~~~~~s~d---g~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 186 (491)
..|......+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+... ...|...|.+++|+|++++|++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA--QQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE--EEECSSCEEEEEECTTSSEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE--eccccCCEEEEEECcCCCEEEE
Confidence 3455556678999999999999999 69999999999999999987 5444332 2456778999999999999999
Q ss_pred EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011179 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 187 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
++.|+.|++||+.+++..... +|...|.+++| ++++++|++++.||.|++||+.+++.+..
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred EcCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 999999999999988754422 25568999999 89999999999999999999999998888
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE-eccccCcEEEEEEcCCCCE----EEEeeCCCc
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRY----LISNGKDQA 339 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~----l~s~~~dg~ 339 (491)
+..+. .+.++.+. ...+++++.++.+++|+++... ..... ...+...+.++.+.++... +++++.|+.
T Consensus 167 ~~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 167 LQLPE-RCYCADVI---YPMAVVATAERGLIVYQLENQP---SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp EECSS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSSC---EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EecCC-CceEEEec---CCeeEEEeCCCcEEEEEecccc---chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 87654 67777775 3588899999999999997321 11111 1223445566666555544 999999999
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE------eeEEEEecccccCCCcEE
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l 413 (491)
|++||++..... ..+..+.+|.... .......+.+|+|++++|
T Consensus 240 i~i~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 288 (368)
T 3mmy_A 240 VAIHYINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288 (368)
T ss_dssp EEEEESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred EEEEecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence 999999874210 2334444444211 000123344677899999
Q ss_pred EEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 414 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 414 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++++.||.|++||+.+++++..+..|..+|++++|+|++++|++++.|+..+.|++...+
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 999999999999999999999999999999999999999999999999877777765443
No 62
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-36 Score=280.06 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=213.7
Q ss_pred EEEEeecCCCceeEEEEEECCCC-CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC
Q 011179 159 IQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (491)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 237 (491)
+.......+|.+.|.+++|+|++ ++|++++.|++|++|++........... ....+|...|.+++|+|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-----------RSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE-----------EEEECCSSCEEEEEECT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc-----------eEEeCCcccEEEEEECC
Confidence 34444567899999999999965 8999999999999999864332110000 01225778999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++ +..+..+.+|..
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~~ 149 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-----GQCLATLLGHND 149 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-----SCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccCC
Confidence 99999999999999999999999999999999999999997 789999999999999999985 567788889999
Q ss_pred cEEEEEEcCC------CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 318 GITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 318 ~i~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.|.++.++|+ +..|++++.|+.|++||+++ ......+.+|
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------------------------------~~~~~~~~~h 195 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----------------------------------FQIEADFIGH 195 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCC
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc----------------------------------chhheeecCC
Confidence 9999999985 44899999999999999987 2455566677
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.... .+.+|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++..
T Consensus 196 ~~~v------~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 196 NSNI------NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp CSCE------EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred CCcE------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 6332 2336778999999999999999999999999988875 4689999999999999988765 499999875
Q ss_pred C
Q 011179 472 N 472 (491)
Q Consensus 472 ~ 472 (491)
.
T Consensus 268 ~ 268 (319)
T 3frx_A 268 Q 268 (319)
T ss_dssp E
T ss_pred C
Confidence 4
No 63
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-36 Score=289.43 Aligned_cols=251 Identities=23% Similarity=0.341 Sum_probs=208.8
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...|.+++|+|||++||+|+.|+.|+|||+.+++.+.. ..+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 34599999999999999999999999999999855443 457788999999999999999999999999999998875
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE-------eccCCCeeEE
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNTV 275 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~~ 275 (491)
..... +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|...|.++
T Consensus 200 ~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 200 SLTLS-----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp EEEEE-----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred EEEEE-----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 43322 222789999999 8999999999999999999999887766 5789999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccC--------CCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+|+ +++++|++|+.|+.|++||++.... ...+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 263 ~~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 263 VFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEC-CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 998 8899999999999999999873211 1334567788999999999999999999999999999999987
Q ss_pred CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
+..+..+.+|..............++|++++|++|+.||.|+||++
T Consensus 342 ----------------------------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 342 ----------------------------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp ----------------------------------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ----------------------------------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 4667778888754433332223357789999999999999999997
Q ss_pred CC
Q 011179 428 VS 429 (491)
Q Consensus 428 ~~ 429 (491)
..
T Consensus 388 ~~ 389 (393)
T 1erj_A 388 KK 389 (393)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 64
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-36 Score=279.35 Aligned_cols=251 Identities=22% Similarity=0.332 Sum_probs=213.8
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|...|++++|+|++++|++++.|+.|++|++.+++..... .+|...|.+++|+|++++|+
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------------~~h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------------SGHKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE----------------CCCSSCEEEEEECTTSSEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh----------------ccCCCceEEEEEcCCCCEEE
Confidence 44678889999999999999999999999999999887654322 24667899999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
+++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++|+.|+.|++||++ ..+.+..+..|..+|.+++
T Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEEE
Confidence 99999999999999999999999999999999997 789999999999999999998 7788888999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
|+|++++|++++.|+.|++||+++. ..+..+..... .. ...
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~----------------------------------~~~~~~~~~~~-~~----~~~ 197 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASG----------------------------------QCLKTLIDDDN-PP----VSF 197 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCSSC-CC----EEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCC----------------------------------ceeeEEeccCC-Cc----eEE
Confidence 9999999999999999999999873 23333322111 11 122
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeee--Eec-CCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC--SWH-PSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~s-p~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+|+|++++|++++.||.|++||+.+++.+..+.+|...+..+ .++ +++.+|++|+.||.|++||+..++.
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 3677899999999999999999999999999998887654433 344 6788999999999999999987653
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-38 Score=289.53 Aligned_cols=259 Identities=20% Similarity=0.177 Sum_probs=198.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw 196 (491)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 45789999999999999999999999999999999887432 2233457888999999986 48999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCee---eEEEeccCCC
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD 271 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~ 271 (491)
|+.++....... ..+|...|.+++|+|+ +.+|++|+.|+.|++||+..+.. ...+.+|...
T Consensus 87 d~~~~~~~~~~~--------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 87 REENGTWEKSHE--------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CCSSSCCCEEEE--------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred ECCCCcceEEEE--------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 998764322211 1247778999999997 78999999999999999987632 2345579999
Q ss_pred eeEEEEecCC----------------CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC----CEE
Q 011179 272 VNTVCFGDES----------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYL 331 (491)
Q Consensus 272 v~~~~~~~~~----------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l 331 (491)
|.+++|+|.. +++|++|+.|++|++||++... ....+..+.+|...|.+++|+|++ .+|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999998431 4689999999999999986211 114567788999999999999986 788
Q ss_pred EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc
Q 011179 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++++.|++|++||+.+... +.
T Consensus 232 as~s~D~~v~iw~~~~~~~-----------------------------------------------------------~~ 252 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASS-----------------------------------------------------------NT 252 (316)
T ss_dssp EEEETTCEEEEEECSSTTC-----------------------------------------------------------CC
T ss_pred EEEcCCCeEEEEEccCccc-----------------------------------------------------------cc
Confidence 8888888888888764110 00
Q ss_pred EEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 412 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.....+..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 253 -------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 -------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred -------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 00011234677888899999998899999999999998754
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.8e-36 Score=289.01 Aligned_cols=283 Identities=20% Similarity=0.360 Sum_probs=240.5
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEE
Q 011179 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 195 (491)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+ +++|++++.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 35678899987643 3555789999999999999999999866544 35788899999997 679999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
||+.+++...... +|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999886543321 466689999996 5689999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+| +++++++|+.||.|++||++ ....+..+.+|...|.++.| ++.++++++.|+.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 99 46789999999999999998 77888899999999999999 788999999999999999987
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 435 (491)
+..+..+.+|....... +++++++++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTSGM--------ELKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEEEE--------EEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEEEE--------EEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 35566666665433221 22578999999999999999999999999
Q ss_pred ecc---CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 436 LKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 436 ~~~---h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+.. |...|++++|+ +++|++++.||.|++||+..++..
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 876 88999999995 579999999999999999887543
No 67
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.5e-36 Score=281.70 Aligned_cols=248 Identities=21% Similarity=0.297 Sum_probs=212.2
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
..+|...|++++|+|++++|++++.|++|++||..+++...... .|...|.+++|+|++.+|++
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----------------MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSSCCCEEEECTTSSEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe----------------cCCCCEEEEEECCCCCEEEE
Confidence 35788899999999999999999999999999988776543322 23347999999999999999
Q ss_pred EeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc
Q 011179 245 GSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
|+.|+.+++|++... .....+..|...|.+++|+ +++..|++++.|++|++||++ .++.+..+.+|...
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~----~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVE----SGQLLQSFHGHGAD 198 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSC
T ss_pred eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCC----CCeEEEEEcCCCCC
Confidence 999999999998643 3456677899999999997 788899999999999999998 77888999999999
Q ss_pred EEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 319 ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 319 i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
|.+++|+| ++++|++++.|+.|++||+++ +..+..+.+|.....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----------------------------------~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----------------------------------GQCVQAFETHESDVN 244 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSSCEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------------------------------CcEEEEecCCCCCeE
Confidence 99999987 578999999999999999987 356677777764322
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC--CCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.+|+|++++|++|+.|+.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+..+.
T Consensus 245 ------~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 245 ------SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp ------EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred ------EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 3366779999999999999999999998887776543 3578999999999999999999999999997664
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-37 Score=334.89 Aligned_cols=362 Identities=18% Similarity=0.199 Sum_probs=276.9
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCe
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 183 (491)
..+++.........+.+|...|.+++|+| ++.++++|+.||.|++||+.++...... .+|...|.+++|+|++++
T Consensus 681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---FGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE---CCCSSCEEEEEECSSTTE
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee---cCCCCCEEEEEEecCCCE
Confidence 33444444455567789999999999999 5568999999999999999998665543 467789999999999999
Q ss_pred EEEEECCCeEEEEECCCCcccccccccc--------------cccccccccc-------------------------CCC
Q 011179 184 LVYASMSPIVHIVDVGSGTMESLANVTE--------------IHDGLDFSAA-------------------------DDG 224 (491)
Q Consensus 184 l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------------~~~~~~~~~~-------------------------~~~ 224 (491)
|++++.||.|++||+.++.......... ....+.+.+. ...
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 9999999999999998775433322111 0000111110 012
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc-
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN- 303 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~- 303 (491)
+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+ +++++|++++.||.|++||+....
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccce
Confidence 677889999999999999999999999999999999999999999999999998 789999999999999999864200
Q ss_pred --------------------------------------------------------------------------CCCcee
Q 011179 304 --------------------------------------------------------------------------VKGKPA 309 (491)
Q Consensus 304 --------------------------------------------------------------------------~~~~~~ 309 (491)
..+...
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 012334
Q ss_pred eEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe
Q 011179 310 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (491)
Q Consensus 310 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
..+.+|...|++++|+|++++|++++.||.|++||+.+....... .....+..+.+.++...+....+..+..+.
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-----AHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-----CCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-----cCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 456678899999999999999999999999999999886543211 122233344444454444444444444444
Q ss_pred CCcee--Ee---eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 390 GHSVL--RT---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 390 ~~~~~--~~---~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
..... .. ......+.+|+|+++++++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||.|
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 22110 00 01122445688899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCC
Q 011179 465 VRWEFPGNGEAA 476 (491)
Q Consensus 465 ~iw~~~~~~~~~ 476 (491)
++||+.++....
T Consensus 1152 ~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1152 RIWNVSDGQLLH 1163 (1249)
T ss_dssp CEEESSSSCCCC
T ss_pred EEEECCCCceEE
Confidence 999999876543
No 69
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=281.55 Aligned_cols=254 Identities=20% Similarity=0.247 Sum_probs=201.3
Q ss_pred cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE
Q 011179 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~ 244 (491)
..+|...|.+++|+|+ +|++++.|+.|++|++.++.......+ ...+|...|.+++|+|++++|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~------------~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL------------DETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE------------CTTCCCSCEEEEEECTTSSEEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE------------ecCCccCCEEEEEECCCCCEEEE
Confidence 3578889999999987 999999999999999987532111111 01237779999999999999999
Q ss_pred EeCCCeEEEEECCC-------CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 245 GSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 245 ~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
|+.|+.|++||+.. .+.+..+.+|...|.+++|+ +++++|++|+.|++|++||++........+..+.+|..
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99999999999853 35567788999999999998 78999999999999999999532223456778889999
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee
Q 011179 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.|.+++|+|++.+|++++.|+.|++||+.... ...+..+.+|....
T Consensus 155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------~~~~~~~~~h~~~v-- 200 (330)
T 2hes_X 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------WECVAVLNGHEGTV-- 200 (330)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCE--
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------------eeEEEEccCCCCcE--
Confidence 99999999999999999999999999986521 13566777776432
Q ss_pred EEEEecccccCC--CcEEEEEecCCeEEEEECCCC--------cEEEeecc-CCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 398 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSG--------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 398 ~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
++..|+|+ +.+|++|+.|+.|++||+.++ .+...+.. |...|.+++|++++ +|++++.||.|++
T Consensus 201 ----~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i 275 (330)
T 2hes_X 201 ----WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV 275 (330)
T ss_dssp ----EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred ----EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence 23356667 678999999999999998765 34555554 89999999999765 8999999999999
Q ss_pred EcCCCC
Q 011179 467 WEFPGN 472 (491)
Q Consensus 467 w~~~~~ 472 (491)
|++..+
T Consensus 276 w~~~~~ 281 (330)
T 2hes_X 276 YEEVDG 281 (330)
T ss_dssp EEEETT
T ss_pred EEcCCC
Confidence 998654
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.4e-36 Score=288.43 Aligned_cols=294 Identities=21% Similarity=0.322 Sum_probs=245.7
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
..+++....+....+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.+... ..|...|.++.|+ ++.++
T Consensus 141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~ 213 (445)
T 2ovr_B 141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL---YGHTSTVRCMHLH--EKRVV 213 (445)
T ss_dssp EEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE---CCCCCcEEEEEec--CCEEE
Confidence 3344444445556778999999999998 579999999999999999998665543 4677789999995 67899
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
+++.|+.|++||+.+++...... +|...|.+++| +++++++|+.||.|++||+.+++.+..+
T Consensus 214 s~s~dg~i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 214 SGSRDATLRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp EEETTSEEEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred EEeCCCEEEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 99999999999999876543321 35668999999 7889999999999999999999999999
Q ss_pred eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 266 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
.+|...|.++.| ++.++++++.|+.|++||++ .++.+..+.+|...+.++.++ ++++++++.||.|++||+
T Consensus 276 ~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 276 QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEEC
Confidence 999999999999 57899999999999999998 778888999999999998885 569999999999999999
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce-eEeeEEEEecccccCCCcEEEEEecCCeEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i 424 (491)
++ +..+..+.++.. ...+..+ .+ ++++|++|+.||.|++
T Consensus 347 ~~----------------------------------~~~~~~~~~~~~~~~~v~~~----~~--~~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 347 KT----------------------------------GQCLQTLQGPNKHQSAVTCL----QF--NKNFVITSSDDGTVKL 386 (445)
T ss_dssp TT----------------------------------CCEEEEECSTTSCSSCEEEE----EE--CSSEEEEEETTSEEEE
T ss_pred CC----------------------------------CcEEEEEccCCCCCCCEEEE----EE--CCCEEEEEeCCCeEEE
Confidence 87 345556654221 1122222 22 4689999999999999
Q ss_pred EECCCCcEEEee-----ccCCCCeeeeEecCCCCeEEEEeCCCc----EEEEcCCCCC
Q 011179 425 YDLVSGEQVAAL-----KYHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPGNG 473 (491)
Q Consensus 425 wd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~~~Dg~----v~iw~~~~~~ 473 (491)
||+.+++.+..+ ..|.+.|++++|+|++.+|++++.||. |.+||+....
T Consensus 387 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 387 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999998888 478899999999999999999999998 9999998753
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-36 Score=305.19 Aligned_cols=308 Identities=15% Similarity=0.152 Sum_probs=237.5
Q ss_pred ccccCCCCCCccccCCCC---ceEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeEEEEE-eecCCCceeEEEEEECCCCC
Q 011179 108 LSRYLPVNGPWPVDQTTS---RAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~---~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~ 182 (491)
+++..+.+....+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+... .....|...|.+++|+ +++
T Consensus 187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ 265 (615)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS
T ss_pred EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC
Confidence 334334444556778999 9999999999 999999999999999999998766543 1111677799999999 999
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
+|++++.|+.|++||+.+++......... ..+...+.++.|+ +++++++++.||.|++||+.+++.+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCT------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCC------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence 99999999999999999887654433221 1123468888886 8889999999999999999998888
Q ss_pred EEEeccCCCeeEEEEecC--------------------------------CCCEEEEEeCCCeEEEEecccccC------
Q 011179 263 LRILAHTSDVNTVCFGDE--------------------------------SGHLIYSGSDDNLCKVWDRRCLNV------ 304 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~--------------------------------~~~~l~s~~~dg~i~iwd~~~~~~------ 304 (491)
..+.+|...|.+++| |. ++..|++++.|+.|++||+.....
T Consensus 333 ~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 333 KTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKV 411 (615)
T ss_dssp EEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred EEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence 887777666666555 21 134555555555555555432100
Q ss_pred ----------------------------------------------------------------CCcee-eEeccccCcE
Q 011179 305 ----------------------------------------------------------------KGKPA-GVLMGHLEGI 319 (491)
Q Consensus 305 ----------------------------------------------------------------~~~~~-~~~~~~~~~i 319 (491)
..... ..+.+|...|
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 11111 4556788999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI 398 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 398 (491)
++++|+|++++|++++.|+.|++||+.+. ..+..+.+ |...
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~~~---- 533 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRTSK---- 533 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCSSC----
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCCCc----
Confidence 99999999999999999999999999873 34444444 4422
Q ss_pred EEEecccccC----------CCcEEEEEecCCeEEEEECCCC-cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEE
Q 011179 399 RCHFSPVYST----------GQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 399 ~~~~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw 467 (491)
..+.+|+| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|
T Consensus 534 --v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 534 --INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp --EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred --eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence 23346778 8999999999999999999998 78889999999999999999999 9999999999999
Q ss_pred cCCC
Q 011179 468 EFPG 471 (491)
Q Consensus 468 ~~~~ 471 (491)
++..
T Consensus 611 ~~~~ 614 (615)
T 1pgu_A 611 NVVL 614 (615)
T ss_dssp EEC-
T ss_pred eeec
Confidence 9864
No 72
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-37 Score=291.83 Aligned_cols=251 Identities=19% Similarity=0.321 Sum_probs=211.1
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|.+.|++++|+|++++|++|+.|++|+|||+.+++...... +|...|.+++|+|++++|+
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK----------------LHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE----------------CCCTTCCCCEECTTSSEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe----------------cCCCCEEEEEECCCCCEEE
Confidence 346788899999999999999999999999999998876543322 3555899999999999999
Q ss_pred EEeCCCeEEEEECCCCe-------eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe----
Q 011179 244 AGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---- 312 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 312 (491)
+|+.|+.|++||+.+.. ....+.+|.+.|.++.|.|.++..|++|+.|++|++||++ .+..+..+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~~~ 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----TGQRISIFGSEF 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----TCCEEEEECCCS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----CCcEEEEeeccc
Confidence 99999999999997532 3345679999999999986667789999999999999998 66666655
Q ss_pred -ccccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC
Q 011179 313 -MGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 313 -~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
.+|...|.++.|++ ++.+|++|+.|+.|++||++.. ...+..+.+
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------------------------------~~~~~~~~~ 247 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---------------------------------SRAVRTYHG 247 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---------------------------------CCCCEEECC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---------------------------------CcceEEECC
Confidence 67899999999977 8899999999999999999752 245566777
Q ss_pred CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC-------CCeeeeEecCCCCeEEEEeCCCc
Q 011179 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~l~s~~~Dg~ 463 (491)
|.... .+.+|+|++++|++|+.||.|++||+.+++.+..+..+. ..|++++|+|+|++|++|+.||.
T Consensus 248 h~~~v------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 248 HEGDI------NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp CSSCC------CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred cCCCe------EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 76432 233677799999999999999999999999988876543 34899999999999999999999
Q ss_pred EEEEcCCCCC
Q 011179 464 VVRWEFPGNG 473 (491)
Q Consensus 464 v~iw~~~~~~ 473 (491)
|++||+..++
T Consensus 322 i~vwd~~~~~ 331 (380)
T 3iz6_a 322 CYVWDTLLAE 331 (380)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999987654
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-35 Score=288.92 Aligned_cols=308 Identities=17% Similarity=0.262 Sum_probs=240.0
Q ss_pred cccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEEC--CCCC
Q 011179 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQR 182 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~ 182 (491)
...+++....+....+.+|.+.|.+++|+|++ +|++|+.||+|++||+.++..+.. ..+|...|.+++|+ ++++
T Consensus 143 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNIK 218 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEESSSCE
T ss_pred cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEecCCCCC
Confidence 34444444555556778999999999999998 999999999999999999865543 35677899999998 5789
Q ss_pred eEEEEECCCeEEEEECCCCcccccccccccc-------ccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIH-------DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 255 (491)
+|++++.|+.|++||+.++............ ....+......+|...+.++ +++++++++|+.||.|++||
T Consensus 219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999877643222111000 00000111234577778776 56789999999999999999
Q ss_pred CCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 256 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
+.+++.+..+.+|...|.+++|+ ++++++++|+.||.|++||++ .++.+..+.+|...|.++.|+ +++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 297 VAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred CCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 99999999999999999999998 789999999999999999998 788899999999999999997 57999999
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.||.|++||+++.. ....+.... ... ..++++++++|++
T Consensus 370 ~dg~v~vwd~~~~~----------------------------------~~~~~~~~~-~~~------~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 370 ADGSIRGWDANDYS----------------------------------RKFSYHHTN-LSA------ITTFYVSDNILVS 408 (464)
T ss_dssp TTSEEEEEETTTCC----------------------------------EEEEEECTT-CCC------EEEEEECSSEEEE
T ss_pred CCCcEEEEECCCCc----------------------------------eeeeecCCC-Ccc------EEEEEeCCCEEEE
Confidence 99999999998732 222222111 111 1245668999999
Q ss_pred EecCCeEEEEECCCCcEEEe-eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 416 GSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
|+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 409 ~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 409 GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 98 89999999999999886 66789999999997 344666667787766554
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=309.25 Aligned_cols=208 Identities=13% Similarity=0.137 Sum_probs=161.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.|...|.+++|+| |++|++++.|++|+|||+.+++.+.... +...|++++|+|++++|++|+.||.|++||+.++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 4788999999999 8899999999999999999987766543 3457999999999999999999999999999987
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------------
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------------ 268 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------------ 268 (491)
..... ....... ......+|...|.+++|+|+ +..|++|+.||.| +||+++++.+..+..|
T Consensus 131 ~~~~~-~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QLSSF-KLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEEE-EECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ccccc-eeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 65211 1100000 00122468889999999996 5789999999999 9999999988888765
Q ss_pred ------CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE--e---c-------------cccCcEEEEEE
Q 011179 269 ------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L---M-------------GHLEGITFIDS 324 (491)
Q Consensus 269 ------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~-------------~~~~~i~~~~~ 324 (491)
...|++++|+ +++++|++|+.||+|++||++ .++++.. + . .|..+|++++|
T Consensus 205 ~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~----~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDAN----SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp CTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETT----TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred ccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC----CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 4779999998 789999999999999999997 4444432 1 1 13457999999
Q ss_pred c----CCC-CEEEEeeCC-----CcEEEEeC
Q 011179 325 R----GDG-RYLISNGKD-----QAIKLWDI 345 (491)
Q Consensus 325 ~----~~~-~~l~s~~~d-----g~i~iwd~ 345 (491)
+ |++ .+|++|+.+ ..+.+|++
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 5 443 456666554 26777773
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-35 Score=272.77 Aligned_cols=254 Identities=19% Similarity=0.210 Sum_probs=203.8
Q ss_pred eecCCCceeEEEEEE-----CC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEc
Q 011179 163 ILAKSLRWTVTDTSL-----SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 163 ~~~~~~~~~v~~~~~-----sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 236 (491)
....+|...|++++| ++ ++++|++|+.|++|++||+.+++....... ......+|...|.+++|+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~---------~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI---------PHKALTGHNHFVSDLALS 85 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEE---------EEEEECCCSSCEEEEEEC
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccc---------ccchhccCCCceEEEEEC
Confidence 345678889999999 76 899999999999999999876542211100 001123688899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe---c
Q 011179 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---M 313 (491)
Q Consensus 237 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~ 313 (491)
|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +++++|++++.|++|++||+. . ...... .
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~----~-~~~~~~~~~~ 159 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL----G-ECKFSSAEKE 159 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS----S-CEEEECCTTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc----C-Cceeeeeccc
Confidence 999999999999999999999999999999999999999998 789999999999999999986 2 222222 3
Q ss_pred cccCcEEEEEEcCCC----------CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 314 GHLEGITFIDSRGDG----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 314 ~~~~~i~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+|...|.+++|+|++ .+|++++.|+.|++||... .
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------------------~ 204 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------------------------Q 204 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------------E
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------------c
Confidence 788999999999987 7899999999999999543 4
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC-CcEEEeeccCCCCeeeeEecCCCCeEEEEeCCC
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
....+.+|.... .+.+|+|++++|++|+.||.|++||+.+ ......+. +...|.+++|+|++++|+++ .|+
T Consensus 205 ~~~~~~~h~~~v------~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~ 276 (343)
T 2xzm_R 205 IRYTFKAHESNV------NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ 276 (343)
T ss_dssp EEEEEECCSSCE------EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred eeEEEcCccccc------eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence 555666766322 2346778999999999999999999954 44444443 55679999999999877655 578
Q ss_pred cEEEEcCCCCCC
Q 011179 463 DVVRWEFPGNGE 474 (491)
Q Consensus 463 ~v~iw~~~~~~~ 474 (491)
.|++|++.....
T Consensus 277 ~v~iw~~~~~~~ 288 (343)
T 2xzm_R 277 GVKIFNLMTQSK 288 (343)
T ss_dssp CEEEEESSSCCS
T ss_pred CEEEEEeCCCCC
Confidence 899999987654
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=281.81 Aligned_cols=263 Identities=18% Similarity=0.171 Sum_probs=213.7
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeEE
Q 011179 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~ 194 (491)
...+.+|.+.|++++|+|+|++||+|+.||.|+|||+..+.. ........|...|++++|+|+ +++|++++.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999985422 233344678889999999987 89999999999999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCC
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTS 270 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~ 270 (491)
+||+.+++....... .+|...|.+++|+|+ +++|++++.|+.|++||+..+. ....+..|..
T Consensus 83 iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 83 IWKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred EEEcCCCceeEeeee--------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 999988763222221 135668999999999 9999999999999999998873 3445678999
Q ss_pred CeeEEEEecC------------CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC---CCEEEEee
Q 011179 271 DVNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNG 335 (491)
Q Consensus 271 ~v~~~~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~ 335 (491)
.|.+++|+|. ++.+|++++.||.|++||++...........+.+|...|.+++|+|+ +++|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 9999999843 68999999999999999998443333456678889999999999999 88899999
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.||.|++||+++....
T Consensus 229 ~dg~i~iwd~~~~~~~---------------------------------------------------------------- 244 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGP---------------------------------------------------------------- 244 (379)
T ss_dssp TTSCEEEEEESSTTSC----------------------------------------------------------------
T ss_pred CCCEEEEEeCCCCCcc----------------------------------------------------------------
Confidence 9999999988752100
Q ss_pred EecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 416 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
....+.....|...|++++|+|++++|++++.||.|++|++..
T Consensus 245 -------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 245 -------------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp -------------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred -------------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 0001111234788899999999999999999999999999874
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.9e-36 Score=311.67 Aligned_cols=221 Identities=17% Similarity=0.268 Sum_probs=189.3
Q ss_pred ccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
+++.........+.+|.++|.+++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++|+|++++|+++
T Consensus 39 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~ 115 (814)
T 3mkq_A 39 IWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSG 115 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEEEEEEeCCCCEEEEE
Confidence 3343344445677889999999999999999999999999999999998766544 4567789999999999999999
Q ss_pred ECCCeEEEEECCCCc-cccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 011179 188 SMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
+.||.|++|++.++. ..... .+|...|.+++|+| +++.|++++.||.|++||+.++.....+
T Consensus 116 ~~dg~i~vw~~~~~~~~~~~~----------------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 116 SDDLTVKLWNWENNWALEQTF----------------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp ETTSEEEEEEGGGTSEEEEEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred cCCCEEEEEECCCCceEEEEE----------------cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 999999999998652 21111 14566899999999 8899999999999999999988877777
Q ss_pred eccC-CCeeEEEEec-CCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 266 LAHT-SDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 266 ~~h~-~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
..+. ..+.+++|+| +++.+|++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 6555 8999999983 288999999999999999998 777888899999999999999999999999999999999
Q ss_pred eCCCCCCc
Q 011179 344 DIRKMSSN 351 (491)
Q Consensus 344 d~~~~~~~ 351 (491)
|+.+....
T Consensus 256 d~~~~~~~ 263 (814)
T 3mkq_A 256 NSSTYKVE 263 (814)
T ss_dssp ETTTCSEE
T ss_pred ECCCCcEE
Confidence 99876543
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=290.79 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=223.5
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 131 ~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
.|+|+++.+++++ .|+.. ++.+.. ...+|...|++++|+| ++++|++|+.|+.|++||+.+.........
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~~--~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIAT--LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEEE--ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------ccccc-ceEEee--eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4788888887765 38744 444443 2367788999999999 999999999999999999876211110000
Q ss_pred ccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEec------------cCCCeeE
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILA------------HTSDVNT 274 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------h~~~v~~ 274 (491)
.. ..+|...|.+++|+|++++|++++.||.|++||+. +++....+.. +...+.+
T Consensus 105 ~~-----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 105 SL-----------TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp SE-----------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred ee-----------eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence 00 01356689999999999999999999999999995 5544443332 4455666
Q ss_pred EEEe-cCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc--ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 275 VCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 275 ~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
+.+. .+++++|++++.|+.|++||++ ..+.+..+.. |...|++++|+|++++|++++.||.|++||+++
T Consensus 174 ~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---- 245 (437)
T 3gre_A 174 MRAFVNEEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---- 245 (437)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----
Confidence 6632 2678899999999999999998 7788888887 899999999999999999999999999999987
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
+..+..+. .+. ..+..+.+++.+++++.+|++|+.||.|++||+.++
T Consensus 246 ------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 246 ------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 34555554 444 356677788899999999999999999999999999
Q ss_pred cEEEeeccC--------------------------CCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 431 EQVAALKYH--------------------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 431 ~~~~~~~~h--------------------------~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+++..+.+| ...|++++|+ ++++|++++.||.|++||+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 988777644 4557788888 6789999999999999999877543
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=281.06 Aligned_cols=311 Identities=15% Similarity=0.103 Sum_probs=223.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe---EEEEEeec-----------------------------------
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA----------------------------------- 165 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~---~~~~~~~~----------------------------------- 165 (491)
..++.+++|+|||++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999966665 57899999999887 33332210
Q ss_pred ----------------CCCceeEEEEEECCCCCeE-EEEECCCeEEEEECC--CCccccccccccccccccccccCCCCc
Q 011179 166 ----------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 166 ----------------~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
..|...|.+++|+|++++| ++++.|+.|++|++. +++........ .|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~ 148 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CF 148 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------EC
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cC
Confidence 1233369999999999996 888899999999998 66554433211 13
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEEecCC---CCEEEEEeCCCeEEEEec
Q 011179 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 227 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~ 299 (491)
...|.+++|+|++++|++|+.+|.|++|++.+++... .+.+|...|++++|+ ++ +++|++|+.|+.|++||+
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence 3479999999999999999999999999998877544 677899999999998 66 889999999999999999
Q ss_pred ccccCCCceeeE-eccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 300 RCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
+ .+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++............. ..+......
T Consensus 228 ~----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~---- 293 (450)
T 2vdu_B 228 P----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-----KPYLNDQHL---- 293 (450)
T ss_dssp S----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-----GGGCCTTSB----
T ss_pred C----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-----hhhhhhccc----
Confidence 7 6666666 56899999999999 9999999999999999999885432221100000 000000000
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEEC--CCC---cEEEeeccCCCCeeeeEecCCC
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSG---EQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~~~~sp~~ 452 (491)
+ ......-........+ ..+.++|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++
T Consensus 294 -~-~~~~~~~~~~~~~~~v----~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 294 -A-PPRFQNENNDIIEFAV----SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp -C-----------CBCCCE----EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred -c-cccccccccccceEEE----EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 0 0000000000000112 2335667999999999 8999999999 565 677778877 889999999964
Q ss_pred CeEEEEeC-------CCcEEEEcCCCC
Q 011179 453 PMLVSSSW-------DGDVVRWEFPGN 472 (491)
Q Consensus 453 ~~l~s~~~-------Dg~v~iw~~~~~ 472 (491)
++++.+. +..|.+|.+...
T Consensus 367 -~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 -FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp -EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred -EEEEEecccCCCCCCcceEEEEEEcC
Confidence 4444432 556899987654
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.5e-36 Score=284.78 Aligned_cols=293 Identities=14% Similarity=0.211 Sum_probs=228.8
Q ss_pred ceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEECC-CCCeEEEEECCCeEEEEECCCCc
Q 011179 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
....++++|+...++ +++.||.|+||++.+.... .......+|...|++++|+| ++++|++++.||.|++|++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688999876444 5788999999999765332 22233567888999999999 89999999999999999998875
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE--eccCCCeeEEEEec
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~ 279 (491)
....... ......+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..+ ..|...|.+++|+
T Consensus 116 ~~~~~~~---------~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~- 185 (402)
T 2aq5_A 116 LVLPLRE---------PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS- 185 (402)
T ss_dssp CSSCBCS---------CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-
T ss_pred CccccCC---------ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-
Confidence 3211100 000112577799999999998 69999999999999999999999998 7899999999998
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCc-EEEEEEcCCCCEEEEe---eCCCcEEEEeCCCCCCcccc
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~ 354 (491)
+++++|++++.|+.|++||++ .+..+..+ ..|... +.++.|+|++++|+++ +.|+.|++||+++.....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-- 259 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-- 259 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS--
T ss_pred CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc--
Confidence 789999999999999999998 67777777 678776 8999999999999999 799999999998743211
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE-EecCCeEEEEECCCCcE-
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSGEQ- 432 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~- 432 (491)
....+.... . ...++|+|++++|++ |+.||.|++||+.+++.
T Consensus 260 -----------------------------~~~~~~~~~---~----v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 260 -----------------------------SLQELDTSS---G----VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp -----------------------------EEEECCCCS---S----CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred -----------------------------eEEeccCCC---c----eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 011111111 1 123367779999875 55799999999998874
Q ss_pred EEeecc--CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 433 VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 433 ~~~~~~--h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+..+.. |..+|.+++|+|++.++++ .|+.+++|++..+
T Consensus 304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 304 LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 444443 5689999999999998875 5679999999764
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-34 Score=278.87 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=206.7
Q ss_pred CCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEE
Q 011179 166 KSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELV 243 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~ 243 (491)
..|.+.|++++|+|+ +.+|++++.+|.|++|++.+........ +.........+|...|.+++|+|++. +|+
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT------CCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc------ccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 456678999999997 6899999999999999997531110000 00000001125777899999999988 999
Q ss_pred EEeCCCeEEEEECCCCee-------eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc
Q 011179 244 AGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+|+.||.|++||+..+.. ...+..|...|.+++|+|.++.+|++++.||.|++||++... ....+..+..|.
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~ 277 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAHT 277 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECCS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecCC
Confidence 999999999999987322 456668999999999986588999999999999999998322 125677778899
Q ss_pred CcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 317 EGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 317 ~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
..|++++|+|++. +|++++.||.|++||++... ..+..+.+|...
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~~~- 323 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHKDE- 323 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCSSC-
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCCCC-
Confidence 9999999999987 68899999999999998732 345566666532
Q ss_pred eeEEEEecccccCCC-cEEEEEecCCeEEEEECCC--------------CcEEEeeccCCCCeeeeEecCCCC-eEEEEe
Q 011179 396 TLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS--------------GEQVAALKYHTSPVRDCSWHPSQP-MLVSSS 459 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~ 459 (491)
+ .++.|+|++ .+|++++.||.|+|||+.. .+.+..+.+|...|++++|+|+++ +|++++
T Consensus 324 -v----~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 324 -I----FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp -E----EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred -E----EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 2 233566677 4799999999999999987 367778889999999999999999 999999
Q ss_pred CCCcEEEEcCCCC
Q 011179 460 WDGDVVRWEFPGN 472 (491)
Q Consensus 460 ~Dg~v~iw~~~~~ 472 (491)
.||.|++|++...
T Consensus 399 ~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 399 EDNIMQVWQMAEN 411 (430)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCCEEEeEcccc
Confidence 9999999998754
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=280.68 Aligned_cols=269 Identities=10% Similarity=-0.012 Sum_probs=206.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.....|.+++|||||+++|+++.|++|+ |...++. ..+|...|.+++|+|+| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~------l~gh~~~v~~V~FsPdg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD------INCNSKNLFHVKEFPLE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC------CSSBGGGTEEEEEECCC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce------ecCCCccEEEEEECCCC-------CcceEEEEeC---
Confidence 3467899999999999999999999999 7555422 25788899999999999 3555555543
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-----CeeEEE
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-----DVNTVC 276 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~ 276 (491)
+....... +|...|.+++|+|+|++||+++.||.|++||.+. ++..+. |.. .|.+++
T Consensus 75 ~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeec---------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 32222221 1234899999999999999999999999999654 555565 665 499999
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCc---eeeEe----ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
|+ |++++|++|+.||+|++||+........ .+..+ .+|...|.+++|+|+| +++++.|+.|++||+....
T Consensus 137 fS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 137 WN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred Ec-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 98 8999999999999999999973211000 24555 6788899999999999 8889999999999997733
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
.. ....++. +|.. .+ .+.+|+ |++||+++ ++.|++||+.
T Consensus 214 ~~-------------------------------~~~~tL~~~h~~--~V----~svaFs--g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 214 HQ-------------------------------PVSRMIQNASRR--KI----TDLKIV--DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp SC-------------------------------CCEEEEECCCSS--CC----CCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred cc-------------------------------cceeeecccccC--cE----EEEEEE--CCEEEEEe-CCeEEEEECC
Confidence 10 1223442 4431 22 223455 57899887 6999999999
Q ss_pred CCcEEEeeccCCCCeeeeEe--cCCCCeEEEEeCCCcEEEEcCC
Q 011179 429 SGEQVAALKYHTSPVRDCSW--HPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~--sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+++......+|.+.|.+++| +||+..|++++.||+ ++|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 88874444479999999999 999999999999999 999975
No 83
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.8e-34 Score=267.99 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=212.0
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE-EEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iw 196 (491)
..+..|.+.|++++|+|||++||+|+.++ ++||++.++........ + .+..+++.++++.++ +++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---R--HLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---S--CCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---C--CeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34578999999999999999999998775 78999988654433221 1 367788889888874 56778999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~ 275 (491)
|..+++...... |...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+
T Consensus 87 d~~~~~~~~~~~-----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 87 DDVKKQDVSRIK-----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp ETTTTEEEEEEE-----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred ECCCCcEEEEEE-----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence 999887654332 22279999998764 4444 4789999999988 66555544 44556
Q ss_pred EEecCCCCEEEE--EeCCCeEEEEecccccC-----------CCce-eeEeccccCcEEEEEEcCCCCEEEEeeCCCc-E
Q 011179 276 CFGDESGHLIYS--GSDDNLCKVWDRRCLNV-----------KGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA-I 340 (491)
Q Consensus 276 ~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~-----------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-i 340 (491)
+++ + .++++ |+.||.|++||++.... ...+ +..+.+|...|++++|+|+|++|++++.|++ |
T Consensus 144 ~~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 144 EFS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 666 3 56666 58899999999973210 0012 6788999999999999999999999999998 9
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-C-CceeEeeEEEEecccccCCCcEEEEEec
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
++||+++ +..+..+. + |... ..+.+|+|++++|++++.
T Consensus 221 ~iwd~~~----------------------------------~~~~~~~~~g~h~~~------v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 221 RVFKTED----------------------------------GVLVREFRRGLDRAD------VVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp EEEETTT----------------------------------CCEEEEEECTTCCSC------EEEEEECTTSCEEEEEET
T ss_pred EEEECCC----------------------------------CcEEEEEEcCCCCCc------EEEEEECCCCCEEEEEEC
Confidence 9999987 45666776 4 5522 233467789999999999
Q ss_pred CCeEEEEECCCCcE--EEeec---------------------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 419 DSCVYVYDLVSGEQ--VAALK---------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 419 dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
|+.|++||+..+.. ...+. .+..+...++|++|+++|++++.||.+++|++..++..
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 99999999976531 11111 11233477999999999999999999999999887655
Q ss_pred CC
Q 011179 476 AP 477 (491)
Q Consensus 476 ~~ 477 (491)
..
T Consensus 341 ~~ 342 (355)
T 3vu4_A 341 ER 342 (355)
T ss_dssp TE
T ss_pred ce
Confidence 44
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-35 Score=284.01 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=204.7
Q ss_pred ccCCCCceEEEEEcCC------CCEEEEEEcCCeEEEEECCCCeEE-----E---EEeecCCCceeEEEEEECCCCCeEE
Q 011179 120 VDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI-----Q---KDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~d------g~~la~~~~dg~i~iwd~~~~~~~-----~---~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... . ......+|...|++++|+|++ .|+
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la 281 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV 281 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence 5678899999999997 579999999999999999876311 0 011335677899999999864 899
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCeee
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG-RELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
+|+.||+|++||+.++..... . ..+|...|.++ +|+|++ ++|++|+.|++|+|||+++++++
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~-~--------------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSF-Y--------------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSE-E--------------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EEeCCCEEEEEECCCCCCceE-E--------------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 999999999999986532110 0 12477799999 578888 89999999999999999998877
Q ss_pred EEEeccCC--CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcE
Q 011179 263 LRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 263 ~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i 340 (491)
..+.+|.. .|.+++|+ |+++.+++++.|++|++||++ ....+..+.+|...|++++|+|++++|++|+.|++|
T Consensus 347 ~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred cccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 77777764 58899998 778899999999999999998 667777888999999999999999999999999999
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCC----------CCceEEEEeCCceeEeeEEEEecccccCCC
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP----------CDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
++||+.................+.+..+.+.+++..+... .+..+..+.+|.. .+++.+|+|++
T Consensus 422 ~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~------~V~~Vafsp~~ 495 (524)
T 2j04_B 422 IITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI------NITCTKWNETS 495 (524)
T ss_dssp ECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC------SCCCEEECCST
T ss_pred EEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc------eEEEEECCCCC
Confidence 9999865311110000000011122234455554322111 1334455555552 23444677785
Q ss_pred ---cEEEEEecCCeEEEEECC
Q 011179 411 ---KYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 411 ---~~l~~~~~dg~i~iwd~~ 428 (491)
.++|+|+.||.|+||++.
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECS
T ss_pred CccHHHHhhccCceEEEEEcc
Confidence 499999999999999985
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-33 Score=289.31 Aligned_cols=267 Identities=20% Similarity=0.278 Sum_probs=204.7
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..+.+|...|.+++|+|+|++|++|+.||+|+|||+.++...... .+|...|.+++|+|++++|++++.|++|++||
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 457899999999999999999999999999999999998665543 46777999999999999999999999999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
........... ...+|...|.+++|+|++ ..|++++.|+.|++||+.+++....+.+|...|+++
T Consensus 501 ~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 501 TLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp TTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 76543221111 123577799999999987 589999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+ +++++|++|+.||.|++||++ .++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++........
T Consensus 568 ~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 568 AVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp EEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred EEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 998 789999999999999999998 666666665 456899999999998877765 5569999998744322111
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
....... ......++.........+.+++|+|+|++|++|+.||.|+|||+.
T Consensus 641 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 641 VDLKAEA---------------------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCC-------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccc---------------------ccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 0000000 000000000000000112345788899999999999999999975
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-34 Score=293.85 Aligned_cols=264 Identities=19% Similarity=0.182 Sum_probs=213.0
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~i 195 (491)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .......+|...|.+++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45789999999999999999999999999999999985422 333345678889999999998 999999999999999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCC
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD 271 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~ 271 (491)
||+.++........ .+|...|.+++|+|+ ++++++|+.||.|++||+.++. ....+.+|...
T Consensus 82 wd~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 82 WKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EECCCCcccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99988753222221 246679999999999 9999999999999999998873 44566789999
Q ss_pred eeEEEEecC------------CCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC---CCEEEEeeC
Q 011179 272 VNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK 336 (491)
Q Consensus 272 v~~~~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~ 336 (491)
|.+++|+|. ++.+|++|+.||.|++||++...........+.+|...|++++|+|+ +++|++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 999999853 58999999999999999998443333666778899999999999999 899999999
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
||.|++||+++....
T Consensus 228 Dg~I~iwd~~~~~~~----------------------------------------------------------------- 242 (753)
T 3jro_A 228 DRTCIIWTQDNEQGP----------------------------------------------------------------- 242 (753)
T ss_dssp SSCEEEEEESSSSSC-----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCCc-----------------------------------------------------------------
Confidence 999999998762100
Q ss_pred ecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
....+.....|...|++++|+|++++|++++.||.|++|++..+.
T Consensus 243 ------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 ------------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ------------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ------------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 000111223578889999999999999999999999999998654
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=279.70 Aligned_cols=263 Identities=14% Similarity=0.129 Sum_probs=197.4
Q ss_pred ceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 011179 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d 248 (491)
..+|++++|+|++++|++++.|+.|++|++.++....... ..+|...|.+++|+|++++|++++.|
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~--------------~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART--------------FSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC--------------BCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE--------------EecCCceEEEEEEeCCCCEEEEEeCC
Confidence 3479999999999999999999999999998763211111 12577799999999999999999999
Q ss_pred CeEEEEECCCCe---eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-ccCcEEEEEE
Q 011179 249 DCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDS 324 (491)
Q Consensus 249 g~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~ 324 (491)
+.|++||+.+++ ....+..|...|.+++|+ +++++|++++.|+.|++||++... .......+.. |...|++++|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQEN-DWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcc-cceeeeEeecccCCCeEEEEE
Confidence 999999999877 666777899999999998 789999999999999999997221 1114666777 9999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecc
Q 011179 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
+|++++|++++.|+.|++||++............ + ......+..+..+ +|... ..++
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~~-~~~~~------v~~~ 211 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV----W------------GSRLPFNTVCAEY-PSGGW------VHAV 211 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCS----S------------CSCCCEEEEEECC-CCSSS------EEEE
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccc----c------------ccccchhhhhhcc-cCCce------EEEE
Confidence 9999999999999999999997543221110000 0 0000012233333 44422 2334
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCcE----EEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 405 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+|+|++++|++++.||.|++||+.+++. +..+.+|..+|.+++|+|++++|++++.|+.+ +|+...
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 6778999999999999999999999987 78888999999999999999999998776655 676653
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.9e-34 Score=268.17 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=210.9
Q ss_pred CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
.|..+|.+++|+|++++|++++.|+.|++||+.+++......+ .+|...|.+++|+|++++|++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL--------------KEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE--------------ECCSSCEEEEEEETTTTEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee--------------cCCCCcccEEEEeCCCCEEEEEc
Confidence 3666899999999999999999999999999988752222111 14666899999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEE--eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEE
Q 011179 247 SDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 324 (491)
.||.|++||+.+++....+ ..|...|.+++|+ +++++|++++.|+.|++||++.............+|...|.+++|
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999999888754443 5789999999998 789999999999999999997322111123334678999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecc
Q 011179 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
+|++++|++++.|+.|++||++.......... .........+..+..+.+|.... .++
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v------~~~ 208 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELMFESSSSCGWV------HGV 208 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEEEECCCCSSCE------EEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccc----------------cccccccchhhheEecCCCCCeE------EEE
Confidence 99999999999999999999875332111000 00000112245666666665322 233
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 405 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|+++ .||.|++|++..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 567799999999999999999999999999999999999999999999988877 899999999987
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=269.19 Aligned_cols=283 Identities=9% Similarity=0.038 Sum_probs=211.3
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 130 ~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
..+.+++++|++|+.||.|++||+.+++.+.... ...|.++.|+|+ +++++.|++|++|+............
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 3456788999999999999999999987666554 346888899998 99999999999998764321100000
Q ss_pred ccccccccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEE
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~ 286 (491)
..... ....+|...|.+++|+| ++++|++++.||.|++||+.+++...... .|...|.+++|+ +++.+|+
T Consensus 114 ~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~la 186 (343)
T 3lrv_A 114 NKVLR------EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLA 186 (343)
T ss_dssp CCEEE------EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEE
T ss_pred cceeE------EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEE
Confidence 00000 00113556899999999 99999999999999999999998866654 456689999998 7899999
Q ss_pred EEeCCCeEEEEecccccCCCcee-eEecc-ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+|+.||.|++||++ .+..+ ..+.. |..+|++++|+|++.+|++++ ++.|++||+++.......
T Consensus 187 sg~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~---------- 251 (343)
T 3lrv_A 187 LYSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY---------- 251 (343)
T ss_dssp EECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS----------
T ss_pred EEcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee----------
Confidence 99999999999998 55555 66777 999999999999999999999 559999999985432211
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCcEEEeeccCCCCe
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
..+..+...... .+.+|+|++++|++++. |+.|++|++......... .++
T Consensus 252 ---------------------~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~ 302 (343)
T 3lrv_A 252 ---------------------PTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE 302 (343)
T ss_dssp ---------------------CCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred ---------------------cccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence 001111100000 22467789999999998 999999999766543332 567
Q ss_pred eeeEecC---CCCeEEEEeCCCcEEEEcCCC
Q 011179 444 RDCSWHP---SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 444 ~~~~~sp---~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
..++|.| +...|++++.||.+.++-...
T Consensus 303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 303 SALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred eeEecCccccccceeEEEecCCceEEEEecC
Confidence 8899998 888999999999999886443
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.4e-34 Score=270.92 Aligned_cols=266 Identities=14% Similarity=0.157 Sum_probs=208.9
Q ss_pred CCccccCCCCceEEEEEcCC----C---CEEEEEEcCCeEEEEECCCCeE-----EEEEeecCCC--ceeEEEEEEC---
Q 011179 116 GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQKDILAKSL--RWTVTDTSLS--- 178 (491)
Q Consensus 116 ~~~~~~~h~~~i~~~~~s~d----g---~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~s--- 178 (491)
....+.+|...|++++|+|+ | ++|++++.||.|++|++.++.. +........+ ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 35667799999999999999 9 9999999999999999987753 3333222111 4789999999
Q ss_pred -CCCCe-EEEEECCCeEEEEECCC------CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 179 -PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 179 -p~~~~-l~~~~~d~~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
|++++ |++++.|+.|++||+.+ ++........... ........|...|.+++|+|++ +|++++.||.
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMTPSQFATSVDISERG-LIATGFNNGT 208 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE----EEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee----eeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence 99999 99999999999999987 4433211000000 0000012356689999999999 9999999999
Q ss_pred EEEEECCCCeeeEEEec---c---CCCeeEEEEecCCCCEEEEEeCC---CeEEEEecccccCCCceeeEecc-------
Q 011179 251 IYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMG------- 314 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~------- 314 (491)
|++||+.+++.+..+.. | ...|.+++|+ +++++|++++.| +.|++||++ ..+.+..+..
T Consensus 209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECBC------
T ss_pred EEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECC----CCcccceeccCcccccc
Confidence 99999999999999988 9 9999999998 789999999999 999999998 7778888888
Q ss_pred ------ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 315 ------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 315 ------~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
|...|.+++|+|++++|++++.|+.|++||+++. ..+..+
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------~~~~~~ 329 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----------------------------------ERITTL 329 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------EEEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----------------------------------ceeEEE
Confidence 9999999999999999999999999999999873 344444
Q ss_pred e------CC---------------ceeEeeEEEEecccccCCC----------cEEEEEecCCeEEEEECCCCc
Q 011179 389 K------GH---------------SVLRTLIRCHFSPVYSTGQ----------KYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 389 ~------~~---------------~~~~~~~~~~~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~ 431 (491)
. +| . ..+ .+++|+|++ ++|++++.||.|++||+.+|+
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~v----~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAE--PGV----FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSS--CCE----EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ecccCcccchhhhhccccccccccC--Cce----eEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 4 33 2 122 333566787 799999999999999998764
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-33 Score=266.38 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=202.5
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
|...|.+++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++| ++++|++++.|+.|++||+....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM---AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe---cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 8999999999999999999999999999999998665543 467779999999 56799999999999999998533
Q ss_pred c-ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 203 M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
. .... .+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.+++|+|.+
T Consensus 208 ~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 208 HQIGTL----------------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp CEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred ceeeEE----------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence 2 1111 1466699999999999999999999999999999999999999999999999999656
Q ss_pred CCEEEEEe--CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe--eCCCcEEEEeCCCCCCcccccCC
Q 011179 282 GHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 282 ~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
..++++++ .|+.|++||++ .+..+..+. +...|.+++|+|++++|+++ +.||.|++||+.+...
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~------- 339 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL------- 339 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------
T ss_pred CCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------
Confidence 77888876 79999999998 666776664 66889999999999999994 4899999999976321
Q ss_pred CccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEee
Q 011179 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 436 (491)
.....+.+|... + .+.+|+|++++|++++.||.|++||+.+++.+...
T Consensus 340 -------------------------~~~~~~~~h~~~--v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 340 -------------------------TKQVDIPAHDTR--V----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp -------------------------EEEEEEECCSSC--C----CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred -------------------------eeEEEecCCCCC--E----EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 122234455422 2 23367779999999999999999999998877654
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-32 Score=255.45 Aligned_cols=267 Identities=19% Similarity=0.251 Sum_probs=211.6
Q ss_pred EEEEECCCCeEEEEEeecCCCceeEEEEEECCC-CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCc
Q 011179 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 148 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
+.++...+. .+.......+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.+........ ...+|
T Consensus 18 ~~~~~~~~~-~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-----------~l~~h 85 (340)
T 4aow_A 18 LYFQSMMTE-QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-----------ALRGH 85 (340)
T ss_dssp --------C-EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-----------EECCC
T ss_pred EEEEEccCC-ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-----------EEeCC
Confidence 444444433 23333346789999999999998 589999999999999999876542211111 12357
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 227 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
...|.+++|+|++++|++++.|+.|++|+............+...+..+.++ +++++|++++.|+.+++||+.. ..
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~---~~ 161 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLG---VC 161 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTS---CE
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCC---Cc
Confidence 7899999999999999999999999999999999888888888999999996 7889999999999999999861 22
Q ss_pred ceeeEeccccCcEEEEEEcCCC--CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCce
Q 011179 307 KPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 384 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
.......+|...+..++|++++ .++++++.|+.|++||+++ ...
T Consensus 162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------------------------------~~~ 207 (340)
T 4aow_A 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------------------------------CKL 207 (340)
T ss_dssp EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------------TEE
T ss_pred eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------------------------------Cce
Confidence 3444567889999999998764 5788999999999999987 355
Q ss_pred EEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
+..+.+|.... .+.+|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++. +++++.|+.|
T Consensus 208 ~~~~~~h~~~v------~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i 279 (340)
T 4aow_A 208 KTNHIGHTGYL------NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSI 279 (340)
T ss_dssp EEEECCCSSCE------EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEE
T ss_pred eeEecCCCCcE------EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEE
Confidence 66677776432 2336778999999999999999999999999988874 46899999999875 5566679999
Q ss_pred EEEcCCCC
Q 011179 465 VRWEFPGN 472 (491)
Q Consensus 465 ~iw~~~~~ 472 (491)
++||+...
T Consensus 280 ~iwd~~~~ 287 (340)
T 4aow_A 280 KIWDLEGK 287 (340)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999765
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=267.84 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=199.2
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCC-eEEEEECCCeEEEEEC----CCCcc------cccccccccccc
Q 011179 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV----GSGTM------ESLANVTEIHDG 215 (491)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~----~~~~~------~~~~~~~~~~~~ 215 (491)
.+.+|++...... .....|...|.+++|+|+++ +|++++.|+.|++|++ .+++. ....... ...
T Consensus 26 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 100 (425)
T 1r5m_A 26 IDSSDDLDGFVKI---LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP--FAL 100 (425)
T ss_dssp --------CCCEE---CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC--CCC
T ss_pred ccccccchhhhhh---eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc--ccc
Confidence 4567887665332 23344556899999999999 9999999999999999 77762 1111100 000
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
.....+|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+ +++++|++++.|+.|+
T Consensus 101 ----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 101 ----SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTI 174 (425)
T ss_dssp ----C------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEE
T ss_pred ----cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEE
Confidence 001224677999999999999999999999999999 6777888898999999999997 7899999999999999
Q ss_pred EEecccccCCCceeeEeccccCc---------------EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEG---------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+||++ .+..+..+..+... +.++.|+|++ .+++++.++.|++||+++.........
T Consensus 175 iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~---- 245 (425)
T 1r5m_A 175 LWNVI----SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG---- 245 (425)
T ss_dssp EEETT----TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC----
T ss_pred EEECC----CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc----
Confidence 99997 44555554444443 5555555543 355555555666666555443322211
Q ss_pred ceeeeeeecCCCCCccccCC-C-----------CceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 361 YEWDYRWMDYPPQARDLKHP-C-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
....+..+.+.+++..+... . ...+..+.+|... ..++.|+|++ ++++++.|+.|++||+.
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS------IVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC------EEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc------EEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 01112222222222222111 1 2233334434321 2334566788 99999999999999999
Q ss_pred CCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+++.+..+..|...|.+++|+|++++|++++.||.|++|++....
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999999999999999999998665
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-33 Score=260.17 Aligned_cols=274 Identities=13% Similarity=0.052 Sum_probs=221.5
Q ss_pred ccccccCCCCCCccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 106 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
..+++....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+.... +...|.+++|+|++++|+
T Consensus 56 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 131 (369)
T 3zwl_B 56 ASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFL 131 (369)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEE
T ss_pred EEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEE
Confidence 3344444445556778999999999999999999999999999999999987766544 445799999999999999
Q ss_pred EEECC-----CeEEEEECCCCccccccccccccccccccccCCCCcee--cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011179 186 YASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 186 ~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
+++.+ +.|++|++..+............... ....|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH-----KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE-----EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EecCCccCCCCEEEEEEecCCccceeecccccceee-----eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99999 99999999876543322211110000 0012222 799999999999999999999999999998
Q ss_pred -CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 259 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 259 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
.+.+..+..|...|.+++|+ +++++|++++.|+.|++||++ ....+..+. +...+..++|+|+++++++++.+
T Consensus 207 ~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 207 NYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp TTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECC
T ss_pred CcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCceeEEecCCCceEEEeecC
Confidence 78888888999999999998 789999999999999999998 666666665 77899999999999999999998
Q ss_pred C--------------cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 338 Q--------------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 338 g--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+ .+++||+.+ ...+..+.+|.... .+
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~~~~~~~~~~~v------~~ 320 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIF----------------------------------EEEIGRVQGHFGPL------NT 320 (369)
T ss_dssp C-------------CEEEEEETTT----------------------------------CCEEEEEECCSSCE------EE
T ss_pred CCceEEEEecCCCcceeEEEecCC----------------------------------CcchhheecccCcE------EE
Confidence 8 788888876 45666777776332 23
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
++|+|++++|++++.||.|++|++.++....
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 3677799999999999999999998765443
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.7e-33 Score=267.47 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=182.9
Q ss_pred ECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC--------CCCEEEEEeCC
Q 011179 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--------DGRELVAGSSD 248 (491)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--------~~~~l~~~~~d 248 (491)
+.+++.+|++++.|++|+|||..+++....... ....+|...|.+++|+| |+++||+|+.|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~-----------~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVL-----------GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE-----------CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeee-----------cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 344566899999999999999988765332211 12347889999999998 88999999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc---------------------
Q 011179 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--------------------- 307 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------- 307 (491)
++|+|||+.++..+..+..|...|.+++|+|.+.++|++++.|++|++||++.......
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 99999999998888888899999999999955567899999999999999973321111
Q ss_pred eeeEeccccCcEEEEEEc-CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE
Q 011179 308 PAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
......+|...+.++.|+ |+++.|++++.|+.+++||+........... .........+.+ ...
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~----~~~~~~~~~~~~-----------~~~ 310 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD----STMKLGPKNLLP-----------NVQ 310 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSC-----------SEE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee----ecCccccEEEcc-----------ccc
Confidence 011224577888899986 8999999999999999999987543222110 000000011111 111
Q ss_pred EEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
....+. ......+.+ ..++.++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.|| +.+
T Consensus 311 ~~~~~~---~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 311 GISLFP---SLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp EECSSC---CSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred cccccC---cceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 111111 111112222 23566788899999999999999998888888999999999999999999999777 555
Q ss_pred EcCC
Q 011179 467 WEFP 470 (491)
Q Consensus 467 w~~~ 470 (491)
|.+.
T Consensus 385 vrL~ 388 (393)
T 4gq1_A 385 TRLM 388 (393)
T ss_dssp EEEG
T ss_pred EEEe
Confidence 5543
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-33 Score=264.42 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=205.0
Q ss_pred CCCCceEEEEEcCC----CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCCeEEEE
Q 011179 122 QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~i~~~~~s~d----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw 196 (491)
.|...|++++|+|+ |++|++|+.||.|++||+.+++.+... ..|...|.+++|+| ++++|++++.|+.|++|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 36788999999999 679999999999999999998666543 35777999999999 89999999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe----------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------- 266 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------- 266 (491)
|+.+++....... ..+|...|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 144 d~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 144 NIQTDTLVAIFGG-------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp ETTTTEEEEEECS-------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EeecCeEEEEecc-------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 9998765443321 12466699999999999999999999999999999876543332
Q ss_pred ------------------ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccC----------CCceeeEeccccCc
Q 011179 267 ------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEG 318 (491)
Q Consensus 267 ------------------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~ 318 (491)
.|...|.+++|+ +++|++++.|+.|++||++.... ....+..+..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred cccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 399999999997 67999999999999999873321 11346777889999
Q ss_pred EEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 319 ITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 319 i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
|++++|+|+ +++|++++.||.|++||+.+..... .....+.+|.....
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------------AKCTTLTHHKCGAA 337 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------------------------------CEEEEECCTTCCSC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------------------------------ccceEEcccccCCc
Confidence 999999999 9999999999999999998743211 24445666532223
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
+.. ++|+|++++|++++.||.|++||+.
T Consensus 338 v~~----~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQ----TSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEE----EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEE----EEeCCCCCeEEEEeCCCEEEEEEec
Confidence 333 3566799999999999999999985
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=271.03 Aligned_cols=267 Identities=13% Similarity=0.158 Sum_probs=198.0
Q ss_pred CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCce------------ecEEEEE
Q 011179 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS------------FGIFSLK 234 (491)
Q Consensus 167 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~~~ 234 (491)
.+...|++++|+|++++|++|+.||.|+||++.++............ ......+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-----VYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-----EEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-----EecccccccccccccccccccCceEEEE
Confidence 34568999999999999999999999999999876521100000000 000011354 6799999
Q ss_pred EcCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------EE-EeccCCCe
Q 011179 235 FSTDG--RELVAGSSDDCIYVYDLEANKLS---------------------------------------LR-ILAHTSDV 272 (491)
Q Consensus 235 ~s~~~--~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v 272 (491)
|+|++ .+|++++.|+.|++||+.++... .. ..+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 79999999999999999764432 12 25799999
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceee-------EeccccCcEEEEEEcCCC-CEEEEeeCCCcEEEEe
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWD 344 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd 344 (491)
.+++|+ +++++|++| .|+.|++||++.. ..... .+.+|...|++++|+|++ ++|++++.||.|++||
T Consensus 181 ~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 181 NSISIN-SDYETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CEEEEC-TTSSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEEEEc-CCCCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 999998 789999998 7999999999721 22222 356899999999999998 9999999999999999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee------EEEEecccccCCCcEEEEEec
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL------IRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~ 418 (491)
+++..... ..+..+.++...... .....+++|+|++++|++++.
T Consensus 256 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 256 MRASALCD------------------------------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp TTTCSSSC------------------------------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred CcCCcccc------------------------------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 98844210 113445544321000 002234467779999999999
Q ss_pred CCeEEEEECCC-CcEEEeeccCCCC---------------eeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 419 DSCVYVYDLVS-GEQVAALKYHTSP---------------VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+.|++||+.+ ++++..+.+|... +..++|+|++++|++++.||.|++||+..++.
T Consensus 306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 9999999997 8888888888542 23499999999999999999999999987653
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-32 Score=259.10 Aligned_cols=245 Identities=11% Similarity=0.109 Sum_probs=193.6
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
.+|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++|+|++++|++++.|+.|++||+.
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 47999999999999 7899999999999999999864 555555555566789999999999999999999999999994
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CeeeEEEeccCCCeeE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNT 274 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~ 274 (491)
++..... .+|...|.+++|+|+++ +|++++.|+.|++||+.+ +..+..+ .|...|.+
T Consensus 194 -~~~~~~~----------------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~ 255 (383)
T 3ei3_B 194 -GHEIFKE----------------KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNA 255 (383)
T ss_dssp -SCEEEEE----------------ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEE
T ss_pred -CCEEEEe----------------ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEE
Confidence 3322111 13666899999999999 999999999999999987 5566555 79999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc-----------------CcEEEEEEcCCCCEEEEeeCC
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----------------EGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l~s~~~d 337 (491)
++|+|.++++|++++.|+.|++||++ .......+.+|. ..+..++|+|++++ +++.|
T Consensus 256 ~~~s~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEECTTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred EEEcCCCCCEEEEEcCCCcEEEEECC----CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 99983289999999999999999998 444444444332 34555777777776 78899
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 417 (491)
+.|++||+.+ +..+..+.++.....+ ...+|+|++++|++|+
T Consensus 330 ~~i~iwd~~~----------------------------------~~~~~~l~~~~~~~~~----~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 330 RTIDIYDANS----------------------------------GGLVHQLRDPNAAGII----SLNKFSPTGDVLASGM 371 (383)
T ss_dssp CCEEEEETTT----------------------------------CCEEEEECBTTBCSCC----CEEEECTTSSEEEEEE
T ss_pred CeEEEEecCC----------------------------------CceeeeecCCCCCceE----EEEEEecCccEEEEec
Confidence 9999999987 3556666654321111 1125777999999997
Q ss_pred cCCeEEEEECCC
Q 011179 418 HDSCVYVYDLVS 429 (491)
Q Consensus 418 ~dg~i~iwd~~~ 429 (491)
||.|++||+.+
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999864
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.1e-32 Score=258.96 Aligned_cols=280 Identities=16% Similarity=0.210 Sum_probs=212.9
Q ss_pred ccccccccCCCCCCc--cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC
Q 011179 104 CCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 104 ~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 181 (491)
....+++.-..+... .+.+|...|++++|+|+|++||+|+.||.|+|||+.+++.+.. ..+|...+.++.+ ++
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~~~h~~~v~~~s~--~~ 199 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---MTSHSARVGSLSW--NS 199 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEE--ET
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---EeCCCCceEEEee--CC
Confidence 334444443333223 3457888999999999999999999999999999999966654 3567778888877 56
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK- 260 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~- 260 (491)
.+|++++.|+.+++|+......... . ..+|...+..+.|+|+++++++++.|+.|++||..+++
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~-~--------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVA-T--------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEE-E--------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred CEEEEEeCCCceeEeeecccceeeE-E--------------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 8999999999999999876543211 0 12466689999999999999999999999999998765
Q ss_pred ---eeEEEeccCCCeeEEEEecCCCCEEEEE--eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee
Q 011179 261 ---LSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 261 ---~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 335 (491)
.+.....|...|.+++|+|.+.++++++ +.|++|++||++ .+.....+.. ...+.++.|+|+++.+++++
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDA-HSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEEC-SSCEEEEEEETTTTEEEEEE
T ss_pred cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeecc-ccceeeeeecCCCCeEEEEE
Confidence 3456678999999999997778888765 479999999998 6777776664 46788999999999988765
Q ss_pred --CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEE
Q 011179 336 --KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 336 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
.|+.|+|||+.+ ...+..+.+|.... .+++|+|+|++|
T Consensus 340 g~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~~V------~~l~~spdg~~l 379 (420)
T 4gga_A 340 GFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSRV------LSLTMSPDGATV 379 (420)
T ss_dssp CTTTCCEEEEETTT----------------------------------CCEEEEECCCSSCE------EEEEECTTSSCE
T ss_pred ecCCCEEEEEECCC----------------------------------CcEEEEEcCCCCCE------EEEEEcCCCCEE
Confidence 689999999987 46788888887432 334677899999
Q ss_pred EEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEe
Q 011179 414 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 414 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 448 (491)
++|+.|++|+|||+....+....+.+...+....+
T Consensus 380 ~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 380 ASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999999877666555555544444333
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.7e-33 Score=266.19 Aligned_cols=251 Identities=17% Similarity=0.187 Sum_probs=196.0
Q ss_pred CCceeEEEEEECC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEE
Q 011179 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (491)
Q Consensus 167 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~ 244 (491)
.|...|++++|+| ++++||+|+.||.|+|||+.+++...... ..+|...|++++|+| ++++|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------GIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------CCSSSCCCCEEEECSSCTTEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------ccCCCCCEEEEEEeCCCCCEEEE
Confidence 3445799999999 56799999999999999998776433322 236888999999998 7899999
Q ss_pred EeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 245 GSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
|+.||+|++||++++........ +...+.+++|+ +++++|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEee
Confidence 99999999999987655433333 34467899998 889999999999999999985 45677788999999999
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 323 DSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 323 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+|+|++. +|++++.|+.|++||+++....... ....+|.. .+
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-------------------------------~~~~~h~~------~v 299 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-------------------------------LYSLPHRH------PV 299 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-------------------------------SBCCBCSS------CE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceE-------------------------------EEeeeccc------cc
Confidence 9999876 7889999999999999875432211 11122331 12
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCC------CeeeeEecCCCCeEEEEe------------CCCc
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVSSS------------WDGD 463 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~sp~~~~l~s~~------------~Dg~ 463 (491)
.+++|+|+|++|++++.||.|+|||+.+++....+..|.. .+..+.|+|++.++++++ .++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 3457888999999999999999999999988877765543 244567888888777764 3457
Q ss_pred EEEEcCCCCCC
Q 011179 464 VVRWEFPGNGE 474 (491)
Q Consensus 464 v~iw~~~~~~~ 474 (491)
|++||...+..
T Consensus 380 i~iwd~~~g~~ 390 (435)
T 4e54_B 380 IDVFDGNSGKM 390 (435)
T ss_dssp EEEECSSSCCE
T ss_pred EEEEECCCCcE
Confidence 99999887653
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-32 Score=248.54 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=203.8
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
...+|...|++++| |++++|++++.||.|++||+.++....... .|...|.+++|+|++++|+
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY----------------TGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE----------------ECSSCEEEEEEETTTTEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee----------------cCCccEEEEEECCCCCEEE
Confidence 44678889999999 999999999999999999998776543322 2455899999999999999
Q ss_pred EEeCCCeEEEEECCCC---eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 244 AGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
+++.||.|++|++... +.+..+..|...|.+++|. ++++++++.||.|++|| .......+..|...+.
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVW 146 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEE
T ss_pred EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc------CCcEEEecccCCCcee
Confidence 9999999999998764 5567788999999999994 67999999999999999 3467778888999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeE
Q 011179 321 FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI 398 (491)
Q Consensus 321 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 398 (491)
++.|.| +++++++++.|+.|++||.. .....+.. +... +
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------~~~~~~~~~~~~~--i- 187 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND------------------------------------KVIKTFSGIHNDV--V- 187 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT------------------------------------EEEEEECSSCSSC--E-
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC------------------------------------ceEEEEeccCccc--E-
Confidence 999988 89999999999999999943 34444544 3322 2
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+.+++|++. +++++.||.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+..+..
T Consensus 188 ---~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 188 ---RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp ---EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred ---EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 2224556787 9999999999999999999999999999999999999999 699999999999999987653
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=258.49 Aligned_cols=250 Identities=18% Similarity=0.266 Sum_probs=200.6
Q ss_pred CCCceeEEEEEECCCCCeEE-EEEC---CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---
Q 011179 166 KSLRWTVTDTSLSPDQRHLV-YASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--- 238 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~-~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--- 238 (491)
.+|...|.+++|+|++..++ +++. |+.|++|++.+++....... +|...|.+++|+|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------------EKAKPIKCGTFGATSLQ 79 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------------EESSCEEEEECTTCCTT
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------------cccCcEEEEEEcCCCCC
Confidence 45777999999999996555 5554 89999999998775433221 25558999999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEec-----CCCCEEEEEeCCCeEEEEecccccCCCc-eeeE
Q 011179 239 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD-----ESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV 311 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~ 311 (491)
+++|++|+.||.|++||+.+++ .+..+.+|...|.++.|.+ +++++|++++.||.|++||++ ... ++..
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~ 155 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR----QKDDPVAN 155 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT----SCSSCSEE
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC----CCCCccee
Confidence 6999999999999999999988 8888999999999997642 678999999999999999998 443 5666
Q ss_pred eccccC----cEEEEE----EcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 312 LMGHLE----GITFID----SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 312 ~~~~~~----~i~~~~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+..|.. .+.+++ |+|++++|++++.|+.|++||+++..
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------- 201 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------------------------------- 201 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------------------------------
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------------------------------
Confidence 655544 788988 78999999999999999999998732
Q ss_pred eEEEEeCCceeEeeEEEEecccccC---CCcEEEEEecCCeEEEEECCCCcEEEeec-----cCCCCeeeeEecCCCC-e
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYST---GQKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQP-M 454 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~-~ 454 (491)
. .....+.. ...++.|+| ++.+|++++.||.|++||+.+++.+..+. +|...|++++|+|+++ +
T Consensus 202 ~-~~~~~~~~------~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 202 L-RWETNIKN------GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp E-EEEEECSS------CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred e-eeecCCCC------ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 2 22222221 123346777 89999999999999999998876554443 8999999999999999 8
Q ss_pred EEEEeCCCcEEEEcCCCCCCC
Q 011179 455 LVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 455 l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
|++++.||.|++||+..+...
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC
T ss_pred EEEEeCCCcEEEeecCCCccc
Confidence 999999999999999876543
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.7e-32 Score=255.99 Aligned_cols=254 Identities=15% Similarity=0.158 Sum_probs=203.7
Q ss_pred ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EE
Q 011179 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL 242 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l 242 (491)
....|...|.+++|+|++++|++++.|+.|++|++.++......... .+|...|.+++|+|+++ +|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------------LRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-------------EECSSCEEEEEEEESSSEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-------------eecCCceEEEEECCCCCcEE
Confidence 34578889999999999999999999999999999877521111111 13556899999999999 99
Q ss_pred EEEeCCCeEEEEEC-CCCeeeEEEec--cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC-----CceeeEecc
Q 011179 243 VAGSSDDCIYVYDL-EANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMG 314 (491)
Q Consensus 243 ~~~~~dg~i~vwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~ 314 (491)
++|+.||.|++||+ .+++. ..+.. |...|.+++|+ + +++|++++.|+.|++||++..... .+++..+.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 99999999999999 87765 66778 99999999998 5 899999999999999999731000 44455555
Q ss_pred ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC-CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 315 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
|...|.+++|+|++ +++++.|+.|++||+++ .... .......+..
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--------------------------------~~~~~~~~~~ 194 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--------------------------------GTIEESGLKY 194 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC--------------------------------CEEEECSCSS
T ss_pred eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc--------------------------------ceeeecCCCC
Confidence 88999999999987 99999999999999987 4321 1111122221
Q ss_pred eEeeEEEEecccccC-CCcEEEEEecCCeEEEEECCCC------cEEEeeccCCC---------CeeeeEecCCCCeEEE
Q 011179 394 LRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSG------EQVAALKYHTS---------PVRDCSWHPSQPMLVS 457 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~~~~sp~~~~l~s 457 (491)
. ..+++|+| +++++++++.||.|++|++... +.+..+..|.. .|++++|+|++++|++
T Consensus 195 ~------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 195 Q------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp C------EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred c------eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 1 12346788 8999999999999999999887 77788887765 9999999999999999
Q ss_pred EeCCCcEEEEcCCCCCC
Q 011179 458 SSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 458 ~~~Dg~v~iw~~~~~~~ 474 (491)
++.||.|++||+..+..
T Consensus 269 ~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 269 AGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EETTSCEEEEETTTTEE
T ss_pred ecCCceEEEEcCccHhH
Confidence 99999999999987653
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-34 Score=270.00 Aligned_cols=255 Identities=12% Similarity=0.067 Sum_probs=201.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
+|...|.+++|||||++||+++.||.|+|||.+. .+.. .. |.. .|.+++|||||++|++|+.||+|+||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5688999999999999999999999999999654 2332 22 332 59999999999999999999999999
Q ss_pred ECCCCccccc--cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEEe-ccCC
Q 011179 197 DVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRIL-AHTS 270 (491)
Q Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~-~h~~ 270 (491)
|+.++..... ..+.... ....+|...|.+++|+||| +++++.|+.|++||+..++. ...+. +|..
T Consensus 157 d~~~~~l~~~~~i~l~ti~-------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIR-------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEE-------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred ECCCCccccccceeeeeee-------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9988753111 0011100 0112577799999999999 88889999999999988774 34563 7889
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEE--cCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.|.+++|+ ++.|++++ ++.|++||+. .........+|...|..++| +|++..|++++.||+ ++|....
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-
Confidence 99999997 58898887 6999999986 44443444489999999999 999999999999999 9999742
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
..++||+..+++. |+++++|+..
T Consensus 298 -------------------------------------------------------~~~spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 298 -------------------------------------------------------LHVTADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp -------------------------------------------------------EEEECCCSSHHHH--HHHHHHTTTT
T ss_pred -------------------------------------------------------EEECCCceEEEEc--CCEEEEEECC
Confidence 1356688777664 9999999975
Q ss_pred CCcEEEeeccCCCCeeeeEecCCCCeEEEEeC
Q 011179 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~ 460 (491)
.+. +..+++ ...|.+++|||||+.+|+++.
T Consensus 321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 444 445554 667999999999999999863
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-33 Score=262.71 Aligned_cols=251 Identities=14% Similarity=0.139 Sum_probs=190.2
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEE-----------cCCeEEEEECCCCe-EEEEEe-----ecCCCceeEEEEEECCCC
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGF-----------QASQIRIYDVERGW-KIQKDI-----LAKSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~-----------~dg~i~iwd~~~~~-~~~~~~-----~~~~~~~~v~~~~~sp~~ 181 (491)
.+.+|...|.+++++ ++.+++|. .|+.+++|++.+.. .+.... ....+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 456788888888765 55666653 47789999987642 121111 122334468999999999
Q ss_pred CeEEEEE--CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 182 RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 182 ~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
+++++++ .|++|+|||+.+++...... |...|.+++|+|||++|++++.++ +.+|+..++
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~ 207 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------------TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG 207 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-----------------CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-----------------CCCceEEEEEccCCceEEecccee-EEEEEeccC
Confidence 9987655 68999999999887654332 334799999999999999998655 677777777
Q ss_pred eeeEE--EeccCCCeeEEEEecCCCCEEEEEeCCC----eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEE
Q 011179 260 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 260 ~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 333 (491)
+.+.. ...|...|.+++|+ ++++++++++.|+ .+++|++............+.+|...|++++|+|+|++||+
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred cceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 65543 34688899999998 7889999998887 68889886332222334567789999999999999999999
Q ss_pred eeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE-eCCceeEeeEEEEecccccCCCcE
Q 011179 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
|+.|+.|+|||+++ .+.+..+ .+|.... .+.+|||||++
T Consensus 287 gs~D~~V~iwd~~~----------------------------------~~~~~~~~~gH~~~V------~~v~fSpdg~~ 326 (365)
T 4h5i_A 287 ASNDNSIALVKLKD----------------------------------LSMSKIFKQAHSFAI------TEVTISPDSTY 326 (365)
T ss_dssp EETTSCEEEEETTT----------------------------------TEEEEEETTSSSSCE------EEEEECTTSCE
T ss_pred EcCCCEEEEEECCC----------------------------------CcEEEEecCcccCCE------EEEEECCCCCE
Confidence 99999999999987 3556554 5777432 33477889999
Q ss_pred EEEEecCCeEEEEECCCC
Q 011179 413 IYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 413 l~~~~~dg~i~iwd~~~~ 430 (491)
|++|+.|++|+|||+...
T Consensus 327 laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSEEEEEECCTT
T ss_pred EEEEeCCCeEEEEEcCCC
Confidence 999999999999998643
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.1e-31 Score=239.75 Aligned_cols=281 Identities=13% Similarity=0.158 Sum_probs=191.1
Q ss_pred ceEEEEEcCCCC---EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC-eE-EEEEC--
Q 011179 126 RAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IV-HIVDV-- 198 (491)
Q Consensus 126 ~i~~~~~s~dg~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i-~iw~~-- 198 (491)
.+.++.|-..|- .+++++ ...|++|+..++.........+.|..+|..+.+.||..-|++....+ .+ .++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 356666655553 466665 45899999999855556666677777899999999775444432211 11 11111
Q ss_pred CCC-ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCeeeEEEeccCCCeeE
Q 011179 199 GSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL-EANKLSLRILAHTSDVNT 274 (491)
Q Consensus 199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~-~~~~~~~~~~~h~~~v~~ 274 (491)
... +........ .+|...|..+ ++++.+.+++ .|+.|++|++ .+++.+..+..|...++.
T Consensus 120 spd~~~~~~~l~s-------------~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 120 SSDDESEKQVLLK-------------SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp ------CCEEEEE-------------EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred CCCccccccEEEe-------------CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceee
Confidence 100 000000000 1233345443 4555555533 5999999999 558888888899999999
Q ss_pred EEEec--CCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc---CcEEEEEEcCCCCEE------------EEeeCC
Q 011179 275 VCFGD--ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---EGITFIDSRGDGRYL------------ISNGKD 337 (491)
Q Consensus 275 ~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~s~~~d 337 (491)
++|++ .++.+|++++.|++|+|||+. +++.+..+.+|. ..+.+++|+|+|.++ ++|+.|
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 99984 267999999999999999998 788888887654 367788999999876 567889
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE-----eCCceeEeeEEEEecccccCCCcE
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
++|++||..+.. .+..+ .+|... .... .+ ++.+
T Consensus 260 ~tIklWd~~tgk----------------------------------~l~v~~~~~p~Gh~~~--~lsg----~~--sg~~ 297 (356)
T 2w18_A 260 FQLIVINPKTTL----------------------------------SVGVMLYCLPPGQAGR--FLEG----DV--KDHC 297 (356)
T ss_dssp EEEEEEETTTTE----------------------------------EEEEEEECCCTTCCCC--EEEE----EE--ETTE
T ss_pred cEEEEEECCCCE----------------------------------EEEEEEeeccCCCcce--eEcc----cc--CCCE
Confidence 999999998732 22222 122211 1111 11 3678
Q ss_pred EEEEecCCeEEEEECCCCcEEEeeccCCCCee-eeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 413 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
+++|+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999999999987665 5899999999999999999999985
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.2e-31 Score=256.82 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=223.3
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
..+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999988888888889999999999986664322 223677789999999999999999999999999998876
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
...... .|...+.+++|+|++++++++ +.++.|++||+.+++.+..+.. ...+.+++|+ ++
T Consensus 203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~ 264 (433)
T 3bws_A 203 YKATVD----------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS-KD 264 (433)
T ss_dssp EEEEEE----------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC-TT
T ss_pred EEEEEc----------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc-CC
Confidence 543322 234479999999999988554 4799999999999988777654 4568999997 78
Q ss_pred CCEEEEEe--------CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCcc
Q 011179 282 GHLIYSGS--------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 282 ~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 352 (491)
++.+++++ .|+.|++||++ .++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---- 335 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---- 335 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence 88888887 58899999997 55554443 566788999999999755 66688999999999862
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec--------------
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-------------- 418 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------------- 418 (491)
..+..+..... ...++++|++++|++++.
T Consensus 336 ------------------------------~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 336 ------------------------------KVQKSIPVFDK-------PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp ------------------------------EEEEEEECSSS-------EEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ------------------------------cEEEEecCCCC-------CCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 33333332211 123467789998888876
Q ss_pred -CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeC-CCcEEEEcCCC
Q 011179 419 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 471 (491)
Q Consensus 419 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~-Dg~v~iw~~~~ 471 (491)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988875 457999999999999988875 99999999863
No 108
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.7e-32 Score=246.89 Aligned_cols=213 Identities=19% Similarity=0.291 Sum_probs=171.9
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEEeccCCCeeEEEEecC-CCCEEEEEeCCCeEEEEecc
Q 011179 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 300 (491)
.+|...|.+++|+|+|++|++|+.|++|+|||+.. .+.+..+.+|.+.|.+++|+++ ++++|++|+.|++|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 36888999999999999999999999999999974 4677889999999999999744 48999999999999999997
Q ss_pred cccCCCceeeEeccccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 301 CLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.. ....+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++....
T Consensus 86 ~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------------- 135 (297)
T 2pm7_B 86 NG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---------------------------- 135 (297)
T ss_dssp SS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------------------------
T ss_pred CC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------------------------
Confidence 22 11355667889999999999997 89999999999999999986321
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccc---------cCCCcEEEEEecCCeEEEEECCCCc----EEEeeccCCCCeee
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVY---------STGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRD 445 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~ 445 (491)
.....+.+|... +..+.|+|.. .+++++|++|+.|+.|++||+.+++ ....+.+|...|.+
T Consensus 136 ----~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 136 ----TSPIIIDAHAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp ----BCCEEEECCSSC--EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ----eeeeeeecccCc--cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 112234444421 2222333311 1136799999999999999998776 66788899999999
Q ss_pred eEecCCC---CeEEEEeCCCcEEEEcCCCC
Q 011179 446 CSWHPSQ---PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 446 ~~~sp~~---~~l~s~~~Dg~v~iw~~~~~ 472 (491)
++|+|++ .+|++++.|++|++||+...
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999995 79999999999999998764
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.3e-30 Score=245.13 Aligned_cols=267 Identities=14% Similarity=0.116 Sum_probs=211.2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeE-EEEECCCeEEEEECCCCcccccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
.++++++.|+.|++||+.+++.+.... .+. .+.+++|+|++++| ++++.|+.|++||+.+++........
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP---VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee---cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----
Confidence 467888899999999999986665433 232 48999999999987 56668999999999988765443211
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE-EEEeCCCe
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~ 293 (491)
..+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++++.| ++++.|+.
T Consensus 74 ------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 74 ------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKT 139 (391)
T ss_dssp ------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTE
T ss_pred ------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCE
Confidence 1799999999999886554 679999999999998877754 4578999998 677766 78888999
Q ss_pred EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCC
Q 011179 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
|++||+. .++.+..+..+ ..+..++|+|+++.| ++++.++.|++||+++.
T Consensus 140 v~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------ 190 (391)
T 1l0q_A 140 VSVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------ 190 (391)
T ss_dssp EEEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------------
T ss_pred EEEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------------
Confidence 9999997 66666666654 556899999999987 57778899999999872
Q ss_pred CCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe---cCCeEEEEECCCCcEEEeeccCCCCeeeeEec
Q 011179 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
..+..+..+.. ....+++|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus 191 ----------~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s 252 (391)
T 1l0q_A 191 ----------SVIDTVKVEAA-------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT 252 (391)
T ss_dssp ----------EEEEEEECSSE-------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred ----------eEEEEEecCCC-------ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence 33333333221 12336778999999888 68999999999999998888665 57899999
Q ss_pred CCCCeE-EEEeCCCcEEEEcCCCCC
Q 011179 450 PSQPML-VSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 450 p~~~~l-~s~~~Dg~v~iw~~~~~~ 473 (491)
|++++| ++++.|+.|++||+..++
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCCc
Confidence 999977 677889999999998754
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.4e-31 Score=257.60 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=207.6
Q ss_pred cccCCCCceEEEEEcCC-CCEEEEEEcCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEECCCCC-eEEEEEC
Q 011179 119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASM 189 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~d-g~~la~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~ 189 (491)
....|.+.|++++|+|+ +++||+++.+|.|++|++.+. ...........|...|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45679999999999997 689999999999999999761 00122223346777899999999998 9999999
Q ss_pred CCeEEEEECCCCccccc-cccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eeeEE
Q 011179 190 SPIVHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSLR 264 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~ 264 (491)
||.|++|++.++..... .... ....+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~----------~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAK----------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECS----------EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CCeEEEEeCCCCCCCCceeccc----------eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 99999999987432111 0000 01125777899999999 7789999999999999999987 56777
Q ss_pred EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC-EEEEeeCCCcEEEE
Q 011179 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iw 343 (491)
+..|...|++++|+|....+|++|+.||.|++||++. ...++..+..|...|++++|+|+++ +|++++.|+.|++|
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 8899999999999854555899999999999999982 2467788889999999999999985 68999999999999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc-EEEEEecCCeE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCV 422 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i 422 (491)
|+........... ........+..+.+|... +. ...|+|+++ +|++++.||.|
T Consensus 350 d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~~--v~----~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 350 DLSKIGEEQSTED--------------------AEDGPPELLFIHGGHTAK--IS----DFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EGGGTTCCCCHHH--------------------HHHCCTTEEEECCCCSSC--EE----EEEECSSSTTEEEEEETTSEE
T ss_pred eCCCCccccCccc--------------------cccCCcceEEEcCCCCCC--ce----EEEECCCCCCEEEEEECCCCE
Confidence 9987332111000 000001445555566532 22 235667888 99999999999
Q ss_pred EEEECCCC
Q 011179 423 YVYDLVSG 430 (491)
Q Consensus 423 ~iwd~~~~ 430 (491)
+||++...
T Consensus 404 ~iw~~~~~ 411 (430)
T 2xyi_A 404 QVWQMAEN 411 (430)
T ss_dssp EEEEECHH
T ss_pred EEeEcccc
Confidence 99998653
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-30 Score=248.25 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=191.3
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCC---CeEEEEECCCeEEEE
Q 011179 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIVHIV 196 (491)
Q Consensus 121 ~~h~~~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d~~i~iw 196 (491)
.+|...|.+++|+| ++++|++++.||.|++||+.++....... +...+.++.|+|.+ .++++++.++.|++|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 46999999999999 77899999999999999999986665543 33468899999854 599999999999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeEEE---------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRI--------- 265 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~--------- 265 (491)
|+.+++...... +|...|.+++|+|+++ .|++++.||.|++||+.++. .+..+
T Consensus 172 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 172 DLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp ESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred eCCCcceeeeec----------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 998876543221 3666899999999998 58999999999999998765 33333
Q ss_pred ------eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc-----cCcEEEEEEcCCCCEEEEe
Q 011179 266 ------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 266 ------~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~ 334 (491)
..|...|.+++|+ +++++|++++.||.|++||++ .+........+ ...+........+..++++
T Consensus 236 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp CTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred eeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEE
Confidence 4688999999998 789999999999999999998 33333222211 1222222333445667777
Q ss_pred eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE
Q 011179 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.++.|++||+.+ +..+..+.+|..... +.+|+|++++|+
T Consensus 311 ~~~~~i~v~d~~~----------------------------------~~~~~~~~~~~~~v~------~~~~s~~~~~l~ 350 (408)
T 4a11_B 311 PYGSTIAVYTVYS----------------------------------GEQITMLKGHYKTVD------CCVFQSNFQELY 350 (408)
T ss_dssp EETTEEEEEETTT----------------------------------CCEEEEECCCSSCEE------EEEEETTTTEEE
T ss_pred ecCCEEEEEECcC----------------------------------CcceeeeccCCCeEE------EEEEcCCCCEEE
Confidence 8899999999987 466777777764322 336777999999
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecC-CCCeEEEEeCCCcEEEEcCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+++.||.|++||+.+++.+.....+.. ...+.| +...+.+++.|+.+++|+.+.
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEETTSCEEEEEECC-------------------------------------------
T ss_pred EECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCcc
Confidence 999999999999999988766543322 233444 333566778899999998764
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-30 Score=250.14 Aligned_cols=238 Identities=23% Similarity=0.405 Sum_probs=201.6
Q ss_pred CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE
Q 011179 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~ 245 (491)
..|...|.++.+ ++++|++|+.||.|++||+.+++..... .+|...|.+++| ++++|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~----------------~~h~~~v~~l~~--~~~~l~sg 189 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL----------------TGHTGSVLCLQY--DERVIITG 189 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE----------------CCCSSCEEEEEC--CSSEEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE----------------cCCCCcEEEEEE--CCCEEEEE
Confidence 345567888877 7899999999999999999887754332 246779999999 78899999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||++... .......+.+|...|.+++|
T Consensus 190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE-
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe-
Confidence 999999999999999999999999999999995 4599999999999999997321 11223677889999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
++++|++++.||.|++||+++ ...+..+.+|....... .
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~~~~v~~~--~---- 303 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTST----------------------------------CEFVRTLNGHKRGIACL--Q---- 303 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSSCEEEE--E----
T ss_pred -CCCEEEEEeCCCeEEEEECCc----------------------------------CcEEEEEcCCCCcEEEE--E----
Confidence 678999999999999999987 35666777776433222 1
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 406 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+ +++++++|+.||.|++||+.+++++..+.+|...|.+++| ++.+|++|+.||.|++||+..+.
T Consensus 304 ~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 304 Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred e--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 2 5789999999999999999999999999999999999999 78899999999999999987654
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7e-31 Score=250.71 Aligned_cols=246 Identities=18% Similarity=0.249 Sum_probs=197.2
Q ss_pred EEEEEECCCCCeEE-EEECCCeEEEEECCCCccc-cccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCC
Q 011179 172 VTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSD 248 (491)
Q Consensus 172 v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~d 248 (491)
...++++|+...++ +++.||.|+||++...... .... ...+|...|.+++|+| ++++|++|+.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------------~~~~h~~~V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------------LVCGHTAPVLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------------CBCCCSSCEEEEEECTTCTTEEEEEETT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------------eEecCCCCEEEEEeCCCCCCEEEEEeCC
Confidence 34578888775544 4788999999999654321 1111 1236788999999999 99999999999
Q ss_pred CeEEEEECCCC-------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe--ccccCcE
Q 011179 249 DCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGI 319 (491)
Q Consensus 249 g~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i 319 (491)
|.|++||+.++ +.+..+.+|...|.+++|+|...++|++++.|+.|++||++ .++.+..+ ..|...|
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSCE
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCce
Confidence 99999999987 56788889999999999984334799999999999999998 77788888 7899999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE-eCCceeEeeE
Q 011179 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLI 398 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 398 (491)
.+++|+|++++|++++.|+.|++||+++ +..+..+ .+|... .+.
T Consensus 180 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------------------------------~~~~~~~~~~~~~~-~~~ 224 (402)
T 2aq5_A 180 YSVDWSRDGALICTSCRDKRVRVIEPRK----------------------------------GTVVAEKDRPHEGT-RPV 224 (402)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEETTT----------------------------------TEEEEEEECSSCSS-SCC
T ss_pred EEEEECCCCCEEEEEecCCcEEEEeCCC----------------------------------CceeeeeccCCCCC-cce
Confidence 9999999999999999999999999987 3445555 444422 112
Q ss_pred EEEecccccCCCcEEEEE---ecCCeEEEEECCCCcE-EEeec-cCCCCeeeeEecCCCCeEEE-EeCCCcEEEEcCCCC
Q 011179 399 RCHFSPVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALK-YHTSPVRDCSWHPSQPMLVS-SSWDGDVVRWEFPGN 472 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~~~~sp~~~~l~s-~~~Dg~v~iw~~~~~ 472 (491)
. ..|+|++++|++| +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++ ++.||.|++|++..+
T Consensus 225 ~----~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 225 H----AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp E----EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred E----EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 2 2466799999999 7899999999988764 32322 47788999999999998865 557999999999876
Q ss_pred C
Q 011179 473 G 473 (491)
Q Consensus 473 ~ 473 (491)
.
T Consensus 301 ~ 301 (402)
T 2aq5_A 301 A 301 (402)
T ss_dssp T
T ss_pred C
Confidence 5
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.8e-29 Score=240.06 Aligned_cols=285 Identities=15% Similarity=0.156 Sum_probs=216.0
Q ss_pred cccCCCCceEEEEEcCCCCEE-EEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw 196 (491)
.+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+...... . .+.+++|+|++++|++++ .++.|++|
T Consensus 27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~-~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---S-SPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---S-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---C-CccceEECCCCCEEEEEECCCCEEEEE
Confidence 34444 458999999999987 56668999999999998766554322 2 799999999999886655 56999999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
|+.+++....... ...+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+ ..+.++
T Consensus 102 d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 102 DTTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp ETTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred ECCCCeEEEEEeC-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 9998876443321 1268899999999977 67788999999999999988877655 457999
Q ss_pred EEecCCCCEE-EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee---CCCcEEEEeCCCCCCc
Q 011179 276 CFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSN 351 (491)
Q Consensus 276 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~ 351 (491)
+|+ ++++.+ ++++.++.|++||++ ..+.+..+. +...+.+++|+|++++|++++ .++.|++||+.+.
T Consensus 164 ~~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--- 234 (391)
T 1l0q_A 164 AVT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--- 234 (391)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---
T ss_pred EEC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---
Confidence 998 667666 677889999999997 555555554 567889999999999999888 6899999999872
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEE-EEEecCCeEEEEECCCC
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~ 430 (491)
..+..+..+... ..++++|++++| ++++.|+.|++||+.++
T Consensus 235 -------------------------------~~~~~~~~~~~~-------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 235 -------------------------------KITARIPVGPDP-------AGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp -------------------------------EEEEEEECCSSE-------EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred -------------------------------eEEEEEecCCCc-------cEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 444555544321 234677799877 56688999999999999
Q ss_pred cEEEeeccCCCCee---eeE------------ecCCC----------CeEEEEeCCCcEEEEcCCCCC
Q 011179 431 EQVAALKYHTSPVR---DCS------------WHPSQ----------PMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 431 ~~~~~~~~h~~~v~---~~~------------~sp~~----------~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.+..+..|..+.. .+. |+.+. -.+...+.|..+++|++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 277 TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 99888876654421 122 22221 246666778999999997665
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-30 Score=251.29 Aligned_cols=256 Identities=13% Similarity=0.139 Sum_probs=197.6
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCc---cccccccccc-----------ccc---------------------
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT---MESLANVTEI-----------HDG--------------------- 215 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~-----------~~~--------------------- 215 (491)
++.+++|+|+|++|+++ .++.|++||+.+++ .......... ...
T Consensus 6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 68899999999966655 57899999999887 3222211000 000
Q ss_pred ------ccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeEEEe--ccCCCeeEEEEecCCCCE
Q 011179 216 ------LDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKLSLRIL--AHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 216 ------~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~~ 284 (491)
.........+|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+ +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCE
Confidence 000011112566689999999999996 889999999999999 888877776 567899999998 78999
Q ss_pred EEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC---CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 285 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
|++|+.||.|++|++............+.+|...|++++|+|+ +++|++++.|+.|++||+++.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------------- 230 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------------- 230 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------------
Confidence 9999999999999997332221134477889999999999999 999999999999999999873
Q ss_pred eeeeeeecCCCCCccccCCCCceEEE-EeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc--
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-- 438 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 438 (491)
..+.. +.+|... ..+++|+ ++++|++++.|+.|++||+.+++++..+..
T Consensus 231 ---------------------~~~~~~~~~h~~~------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 282 (450)
T 2vdu_B 231 ---------------------FIVDKWLFGHKHF------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS 282 (450)
T ss_dssp ---------------------TCEEEECCCCSSC------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH
T ss_pred ---------------------ceeeeeecCCCCc------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh
Confidence 33333 3355422 2333677 899999999999999999999998887752
Q ss_pred -----------------------CCCCeeeeEecCCCCeEEEEe-CCCcEEEEcC
Q 011179 439 -----------------------HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 469 (491)
Q Consensus 439 -----------------------h~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~ 469 (491)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235789999999999999998 8999999999
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1e-29 Score=239.42 Aligned_cols=253 Identities=18% Similarity=0.205 Sum_probs=196.5
Q ss_pred ecCCCceeEEEEEECCC---CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC
Q 011179 164 LAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 164 ~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~ 240 (491)
....|...|++++|+|+ +++|++++.||.|++|++.+......... .+|...|.+++|+|+++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ--------------QMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE--------------EECSSCEEEEEECTTSS
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe--------------ccccCCEEEEEECcCCC
Confidence 55788889999999999 59999999999999999987322111111 13666899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE--ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCc
Q 011179 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF--GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
+|++++.||.|++||+.+++.+. +..|...|.+++| + +++++|++++.||.|++||++ ..+.+..+..+ ..
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~-~~ 172 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTR----SSNPMMVLQLP-ER 172 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSS----CSSCSEEEECS-SC
T ss_pred EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECC----CCcEEEEEecC-CC
Confidence 99999999999999999998765 5689999999999 5 778899999999999999998 66777777655 46
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEee
Q 011179 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTL 397 (491)
Q Consensus 319 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 397 (491)
+.++.+.+ ..+++++.++.+.+|+++..... ..... ........
T Consensus 173 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 217 (368)
T 3mmy_A 173 CYCADVIY--PMAVVATAERGLIVYQLENQPSE---------------------------------FRRIESPLKHQHRC 217 (368)
T ss_dssp EEEEEEET--TEEEEEEGGGCEEEEECSSSCEE---------------------------------EEECCCSCSSCEEE
T ss_pred ceEEEecC--CeeEEEeCCCcEEEEEeccccch---------------------------------hhhccccccCCCce
Confidence 66776664 48889999999999999863211 11111 11111222
Q ss_pred EEEEecccccCCCcEEEEEecCCeEEEEECCCC---cEEEeeccCCC------------CeeeeEecCCCCeEEEEeCCC
Q 011179 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHTS------------PVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~~~~~sp~~~~l~s~~~Dg 462 (491)
........+++ ..+++++.||.|++||+... ..+..+..|.. +|++++|+|++++|++++.||
T Consensus 218 ~~~~~~~~~~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 218 VAIFKDKQNKP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEECTTSCE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred EEEcccCCCCC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 22223222222 33999999999999999887 55677777765 799999999999999999999
Q ss_pred cEEEEcCCCCCC
Q 011179 463 DVVRWEFPGNGE 474 (491)
Q Consensus 463 ~v~iw~~~~~~~ 474 (491)
.|++||+..+..
T Consensus 296 ~i~iwd~~~~~~ 307 (368)
T 3mmy_A 296 RFSFWDKDARTK 307 (368)
T ss_dssp CEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987643
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.2e-29 Score=237.43 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=182.2
Q ss_pred EEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceec
Q 011179 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (491)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 229 (491)
||++.+...+. ....|...|++++|+||+++|++|+.++ +++|++.+++....... ..
T Consensus 3 i~s~~~~~~~~---~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~------------------~~ 60 (355)
T 3vu4_A 3 LGSMITRNPIV---PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM------------------RH 60 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC------------------SC
T ss_pred cccccccCCcc---ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec------------------CC
Confidence 45555543322 3356777999999999999999988665 78999887654322110 03
Q ss_pred EEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-c
Q 011179 230 IFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K 307 (491)
Q Consensus 230 i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~ 307 (491)
+..+++.++++.+ ++++.|+.|++||+.+++.+..+. +...|.++.++ ++ .++++ .|+.|++||+. .. +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~----~~~~ 131 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFG----NPWK 131 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESS----TTCC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEc-CC--EEEEE-EcCEEEEEECC----CCce
Confidence 6667888888877 567788999999999999988875 67799999997 43 44444 47899999997 33 4
Q ss_pred eeeEeccccCcEEEEEEcCCCCEEEE--eeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCce-
Q 011179 308 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS- 384 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 384 (491)
.+..+.. +...+++++ .++++ |+.||.|++||+.+.......... .....-.+
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~p~ 187 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-------------------VQQKAILGK 187 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------C
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-------------------ccccccCcc
Confidence 4444443 444566676 56665 688999999999874311100000 00000012
Q ss_pred EEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCe-EEEEECCCCcEEEeec-c-CCCCeeeeEecCCCCeEEEEeCC
Q 011179 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK-Y-HTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
+..+.+|.... .+.+|+|++++|++|+.|++ |++||+.+++++..+. + |...|++++|+|++++|++++.|
T Consensus 188 ~~~~~~h~~~v------~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 188 GVLIKAHTNPI------KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp CEEECCCSSCE------EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cEEEEccCCce------EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 56677776432 23367789999999999998 9999999999999998 5 99999999999999999999999
Q ss_pred CcEEEEcCCCCC
Q 011179 462 GDVVRWEFPGNG 473 (491)
Q Consensus 462 g~v~iw~~~~~~ 473 (491)
|.|++||+..+.
T Consensus 262 ~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 WTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEESSCCS
T ss_pred CEEEEEEccCCC
Confidence 999999998764
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.2e-29 Score=229.75 Aligned_cols=248 Identities=18% Similarity=0.247 Sum_probs=198.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
.+++|...|++++|+|+|++||+|+.||+|++|++.+++.+... .+|...+.++. +++..+++++.++.+++|+.
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHSARVGSLS--WNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEE--EETTEEEEEETTSEEEEEET
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---cCccceEEEee--cCCCEEEEEecCCceEeeec
Confidence 34678899999999999999999999999999999999766554 45655666555 46789999999999999998
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEEeccCCCeeE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNT 274 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~ 274 (491)
......... ..+|...+..+.+++++++|++++.|+.|++||+.+++. ......|.+.|.+
T Consensus 137 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 137 RVAEHHVAT---------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201 (318)
T ss_dssp TSSSCEEEE---------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred CCCceeEEE---------------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence 765432111 114666899999999999999999999999999987653 3455578889999
Q ss_pred EEEecCCCCEEE--EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee--CCCcEEEEeCCCCCC
Q 011179 275 VCFGDESGHLIY--SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSS 350 (491)
Q Consensus 275 ~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~ 350 (491)
+.+++.+.+++. +++.++.|++||.+ ..... ....+...+..+.|+|++..+++++ .|+.|++||+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--- 273 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--- 273 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETT----TCCEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEecc----ccccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---
Confidence 999866666654 56678999999986 44433 3445778899999999999887755 789999999987
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
+..+..+.+|.... .+++|+|++++|++|+.||+|+|||+...
T Consensus 274 -------------------------------~~~~~~l~gH~~~V------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 -------------------------------MAKVAELKGHTSRV------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------------CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------------CcEEEEEcCCCCCE------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 46788888887432 33467789999999999999999998765
Q ss_pred c
Q 011179 431 E 431 (491)
Q Consensus 431 ~ 431 (491)
.
T Consensus 317 d 317 (318)
T 4ggc_A 317 D 317 (318)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=6.2e-31 Score=242.18 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=172.9
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCeE
Q 011179 118 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~--dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i 193 (491)
..+.+|.+.|++++|+| ++++||+|+.|++|++||+.++.. .......+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 45789999999999986 489999999999999999987631 112234577889999999998 7899999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-----------------CCEEEEEeCCCeEEEEEC
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----------------GRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----------------~~~l~~~~~dg~i~vwd~ 256 (491)
++|++..+....... ...+|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus 130 ~lwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKK-------------INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EEEEECSSSCEEECC-------------BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred EEEecCCCCCcceee-------------eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 999998653211111 11246668899999987 468999999999999999
Q ss_pred CCC---eeeEEEeccCCCeeEEEEecCC---CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 257 EAN---KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 257 ~~~---~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
... +.+..+.+|...|.+++|+|.. +++|++++.|++|++||++...........+..|...|.+++|+|++++
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI 276 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence 755 4566778999999999998432 3899999999999999987321111123345678899999999999999
Q ss_pred EEEeeCCCcEEEEeCCC
Q 011179 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (491)
|++++.|+.|++|+...
T Consensus 277 las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEESSSCEEEEEECT
T ss_pred EEEEcCCCeEEEEEECC
Confidence 99999999999999764
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=240.62 Aligned_cols=234 Identities=8% Similarity=0.012 Sum_probs=180.1
Q ss_pred EEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011179 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (491)
Q Consensus 175 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vw 254 (491)
..+.+++.+|++|+.||.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3455688999999999999999999887654433 115667788887 9999999999999
Q ss_pred ECC---------CCeeeEEEe-ccCCCeeEEEEecC--CCCEEEEEeCCCeEEEEecccccCCCceeeEec-cccCcEEE
Q 011179 255 DLE---------ANKLSLRIL-AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 321 (491)
Q Consensus 255 d~~---------~~~~~~~~~-~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~ 321 (491)
+.. +++.+..+. .|...|.+++|+ + ++++|++++.||+|++||++ .++...... .|...|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSS 175 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCE
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEE
Confidence 665 455444444 677899999997 7 89999999999999999998 555555543 45568999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRC 400 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 400 (491)
++|+|++.+|++|+.||.|++||+++.... ...+.. |... +
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~h~~~--v--- 217 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQA---------------------------------SSRFPVDEEAK--I--- 217 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSC---------------------------------CEECCCCTTSC--E---
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCC---------------------------------ccEEeccCCCC--E---
Confidence 999999999999999999999999984321 134444 5422 2
Q ss_pred EecccccCCCcEEEEEecCCeEEEEECCCCcEEEeecc---CCCCee--eeEecCCCCeEEEEeC-CCcEEEEcCCCCCC
Q 011179 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVR--DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGE 474 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~~~~sp~~~~l~s~~~-Dg~v~iw~~~~~~~ 474 (491)
.+.+|+|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++.....
T Consensus 218 -~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 218 -KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp -EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred -EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 2336777999999999 55999999999887665543 445555 5999999999999998 99999999976543
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.7e-30 Score=243.69 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=168.1
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEE--EeecCCCceeEEEEEECC--------CCCeEEEEEC
Q 011179 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASM 189 (491)
Q Consensus 120 ~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~sp--------~~~~l~~~~~ 189 (491)
...|...+....+++++.+||+|+.|++|+|||+.++..... .....+|.+.|++++|+| |+++||+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 345666677777888899999999999999999998865443 334678999999999998 8899999999
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEE----
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR---- 264 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---- 264 (491)
|++|+|||+.++....... +|...+.+++|+|++. +|++++.|++|++||+.+++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp TSEEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred CCeEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 9999999997765432211 2455899999999874 799999999999999988754322
Q ss_pred ---------------------EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 265 ---------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 265 ---------------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
..+|...+.++.|++++++.|++++.|+++++||+. .......+..|...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------C
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEE
Confidence 235778899999988899999999999999999997 3344444444444443333
Q ss_pred E------------------cC--CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCc
Q 011179 324 S------------------RG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 324 ~------------------~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+ +| ++.++++|+.||.|++||+.+. .
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~----------------------------------~ 350 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK----------------------------------D 350 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT----------------------------------T
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC----------------------------------c
Confidence 3 22 3346677889999999999873 3
Q ss_pred eEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
.+..+.+|.. . ..+.+|+|||++||+++.+| +.+|.+
T Consensus 351 ~~~~~~~~~~--~----V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSIPIQLGM--P----IVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEEEEECSS--C----EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEecCCCC--c----EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3333444432 1 23447788999999998776 666654
No 122
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-29 Score=234.39 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=174.7
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEEeccCCCeeEEEEecC-CCCEEEEEeCCCeEEEEeccc
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 301 (491)
+|...|.+++|+|++++|++|+.||.|++||+. +.+.+..+.+|...|++++|+++ ++++|++++.||.|++||++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~- 87 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE- 87 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-
Confidence 578899999999999999999999999999998 56677788899999999999733 28999999999999999997
Q ss_pred ccCCCc--eeeEeccccCcEEEEEEcCC--CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccc
Q 011179 302 LNVKGK--PAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 302 ~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
.+. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++....
T Consensus 88 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------------------------- 137 (379)
T 3jrp_A 88 ---NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------------------------- 137 (379)
T ss_dssp ---TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------------------------
T ss_pred ---CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------------------------
Confidence 554 67778889999999999999 99999999999999999987432
Q ss_pred cCCCCceEEEEeCCceeEeeEEEEecccccC-------------CCcEEEEEecCCeEEEEECCCCc----EEEeeccCC
Q 011179 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYST-------------GQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHT 440 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~ 440 (491)
.....+.+|... +.. +.|+| ++.+|++++.||.|++||+.++. .+..+.+|.
T Consensus 138 -----~~~~~~~~~~~~--v~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 138 -----TSPIIIDAHAIG--VNS----ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp -----CCEEEEECCTTC--EEE----EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred -----eeeEEecCCCCc--eEE----EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 122333444422 222 24444 69999999999999999998764 456778899
Q ss_pred CCeeeeEecCC---CCeEEEEeCCCcEEEEcCCCCC
Q 011179 441 SPVRDCSWHPS---QPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 441 ~~v~~~~~sp~---~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
..|.+++|+|+ +.+|++++.||.|++||+..+.
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 99999999999 8999999999999999998764
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.9e-28 Score=228.74 Aligned_cols=228 Identities=13% Similarity=0.139 Sum_probs=185.5
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeE------EEEEeecCCCceeEEEEEECCC--CCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLRWTVTDTSLSPD--QRHLVYA 187 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~--dg~~la~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~ 187 (491)
..+.+|...|.+++|+| |+++|++|+.||.|++||+.++.. .........|...|.+++|+|+ +++|+++
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence 45578999999999999 699999999999999999987621 1223344567789999999999 9999999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCee--e
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKL--S 262 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~--~ 262 (491)
+.|+.|++||+.+++............... ....+|...+.+++|+|+ +.++++++.++.+.+|+...++. +
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLS---IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCS---CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCCcEEEecCCChHHhccccccccccccc---cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 999999999999887655544332222111 122356778999999997 89999999999998888887765 5
Q ss_pred EEEeccCCCeeEEEEecCCC----CEEEEEeCCCeEEEEeccccc-----------------------------------
Q 011179 263 LRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLN----------------------------------- 303 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~----------------------------------- 303 (491)
..+.+|...|++++|+ +++ ++|++++.||.|++||++...
T Consensus 208 ~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 6677899999999998 665 799999999999999997321
Q ss_pred -------CCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 304 -------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 304 -------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
.....+..+.+|...|++++|+|++++|++++.||.|++||+.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 0125667788899999999999999999999999999999998743
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1e-27 Score=231.21 Aligned_cols=287 Identities=13% Similarity=0.048 Sum_probs=214.0
Q ss_pred CCceEEEE---EcCCCCEEEEEE--------------cCC--eEEEEECCCC--eEEEEEeecCCCceeEEEEEECCCCC
Q 011179 124 TSRAYVSQ---FSADGSLFVAGF--------------QAS--QIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 124 ~~~i~~~~---~s~dg~~la~~~--------------~dg--~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~ 182 (491)
...++.++ |+|+++.+++.+ .++ .|..||..++ ..+... ..+ ..+.+++|+|++.
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~ 135 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF---KTG-FQPKSVRFIDNTR 135 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE---ECS-SCBCCCEESSSSE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE---cCC-CCceEEEEeCCCe
Confidence 45667777 888777665432 233 3444444334 222222 122 2466899999777
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
++++++.++.|++||+.+++......... ..+|...|.+++|+++++++++++.|+.|++||+.+++.+
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEK-----------YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHH-----------HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCccc-----------ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 77888888999999999887654332211 1146668999999999999999999999999999999999
Q ss_pred EEEeccCCCeeEEEEecCCCCEE-EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee------
Q 011179 263 LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG------ 335 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------ 335 (491)
..+..|...+.+++|+ ++++.+ ++++.|+.|++||++ .++.+..+.. ...+.+++|+|++++|++++
T Consensus 205 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 205 ATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCcc
Confidence 8898899999999998 666666 555589999999997 6666666654 45689999999999999888
Q ss_pred --CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEE
Q 011179 336 --KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 336 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
.|+.|++||+++. ..+..+ .+. .....++|+|+++.+
T Consensus 279 ~~~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 279 ESGGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKI 317 (433)
T ss_dssp CSCCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEE
T ss_pred ccCCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEE
Confidence 5889999999872 222222 111 112234667788654
Q ss_pred -EEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeC---------------CCcEEEEcCCCCC
Q 011179 414 -YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW---------------DGDVVRWEFPGNG 473 (491)
Q Consensus 414 -~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~---------------Dg~v~iw~~~~~~ 473 (491)
++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+..++
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 666889999999999999888876 6788999999999998888876 5799999997754
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.2e-28 Score=231.58 Aligned_cols=283 Identities=14% Similarity=0.083 Sum_probs=209.1
Q ss_pred CCceEEEEEcCCCC-EEEEEE----cCC----eEEEEEC--CCCeEEEEEeecCCCceeEEEEEECC-------------
Q 011179 124 TSRAYVSQFSADGS-LFVAGF----QAS----QIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP------------- 179 (491)
Q Consensus 124 ~~~i~~~~~s~dg~-~la~~~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~sp------------- 179 (491)
...+...+|++.|. ++++|+ .+| .|++||+ .+++.+... ....|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35778888999885 566776 467 8999999 888655332 1234444566666554
Q ss_pred -CCCeEEEEECC------CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---
Q 011179 180 -DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--- 249 (491)
Q Consensus 180 -~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg--- 249 (491)
.+..+++++.+ +.|++||+..+....+. +|...+.+++|+|||++|++++.++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~ 203 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS 203 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence 25667776654 79999999754432221 2444899999999999999999875
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCCe--EEEEecccccCCCceeeEeccccCcEEEEEEcC
Q 011179 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (491)
.|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||+. .++ ...+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence 9999999998874 566788899999998 7788776 6666654 9999986 333 356778888999999999
Q ss_pred CCCEEEEeeC-CC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 327 DGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 327 ~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+|+.|++++. ++ .|.+||+.+.. ...+..+.. ....
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~~------~~~~ 315 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEGS------QNQD 315 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSSS------EEEE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCCC------cccC
Confidence 9999988876 44 57777887632 111222211 1234
Q ss_pred ccccCCCcEEEEEecC---CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCC---cEEEEcCCCCCC
Q 011179 404 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGNGE 474 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg---~v~iw~~~~~~~ 474 (491)
++|+|+|++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|++||+.....
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 5788899999988875 58999999988874 455554 899999999999999988877 799999976543
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=252.79 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=180.4
Q ss_pred CccccCCCCceEEEEEcCC--CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC--CCeEEEEECCCe
Q 011179 117 PWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPI 192 (491)
Q Consensus 117 ~~~~~~h~~~i~~~~~s~d--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~ 192 (491)
...+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++.. ........|...|.+++|+|+ ++++++++.||.
T Consensus 46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 4567889999999999998 99999999999999999998742 233344677889999999999 999999999999
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
|++||+.++........ .+|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 125 I~vwdl~~~~~~~~~~~--------------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 125 VSVVEFKENGTTSPIII--------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EEEEECCSSSCCCCEEE--------------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred EEEEEeecCCCcceeEe--------------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 99999988754322221 14666899999999 5899999999999999999877
Q ss_pred ----eeeEEEeccCCCeeEEEEecCC---CCEEEEEeCCCeEEEEecccccCC-CceeeEeccccCcEEEEEEcCCCCEE
Q 011179 260 ----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 260 ----~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l 331 (491)
.....+.+|...|++++|+ |+ +++|++|+.||.|++||++..... .........|...|++++|+|++++|
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred cccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence 5566777899999999998 56 899999999999999999733111 11333445688999999999999999
Q ss_pred EEeeCCCcEEEEeCCCC
Q 011179 332 ISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~ 348 (491)
++++.||.|++||+...
T Consensus 270 ~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 270 ALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECSSSCEECCBCCSS
T ss_pred EEEcCCCEEEEEecCCC
Confidence 99999999999999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.1e-27 Score=232.39 Aligned_cols=283 Identities=13% Similarity=0.073 Sum_probs=216.0
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC--CCCccccccc
Q 011179 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN 208 (491)
Q Consensus 131 ~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~--~~~~~~~~~~ 208 (491)
+|+|++.++++++.|++|.+||..+++.+..+.. ++ .+..++|+||+++|++++.|+.|.+||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 3899999999999999999999999977765532 22 2889999999999999999999999999 6665433222
Q ss_pred cccccccccccccCCCCceecEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cC-CCe
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDV 272 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----------h~-~~v 272 (491)
. ...+..++|+| ||++|++++. +++|.+||..+++++..+.. |. ..+
T Consensus 220 ~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 220 I-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp C-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred c-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 1 12578999999 9999999885 89999999999998888764 22 378
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceee-EeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS 350 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 350 (491)
..+.+++.+..++++...++.|.+||... .+.+. ....+...+..+.|+|+|++|++++ .+++|.+||+.+.
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~----~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-- 356 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKD----IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-- 356 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTT----SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT--
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecC----CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC--
Confidence 89999865677788888999999999873 22222 1223556678899999999876554 5889999999883
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCC-CcEEEEEe-cCCeEEEEECC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGS-HDSCVYVYDLV 428 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~-~dg~i~iwd~~ 428 (491)
+.+..+.............+ ++|+ +.+++++. .|++|.+||+.
T Consensus 357 --------------------------------~l~~~i~~g~~ph~g~g~~~---~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 357 --------------------------------RLSALVDVGKTPHPGRGANF---VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp --------------------------------EEEEEEECSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred --------------------------------eEEEeeccCCCCCCCCCccc---CCCCCccEEEeccCCCceEEEEEeC
Confidence 34444442111000000011 2445 66666665 58999999999
Q ss_pred C-------CcEEEeeccCCCCeeeeEecCCCCeEEEEe-------CCCcEEEEcCCCCCCC
Q 011179 429 S-------GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-------WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 429 ~-------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~-------~Dg~v~iw~~~~~~~~ 475 (491)
+ ++++.++..|.+.+..++++|++++|++++ .+++|.+||+.+.+..
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 8 899999999998999999999999999987 3789999999987754
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.1e-27 Score=212.20 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=135.5
Q ss_pred CCCCeEEEEE--CCCeEEEEECCC-CccccccccccccccccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEE
Q 011179 179 PDQRHLVYAS--MSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIY 252 (491)
Q Consensus 179 p~~~~l~~~~--~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~ 252 (491)
++++++.+++ .|+.|++|++.. ++...... +|...+..++|++ ++..|++++.|++|+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~----------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF----------------LMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE----------------ECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeec----------------cCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 4555444433 477777777733 44322111 2444777888888 779999999999999
Q ss_pred EEECCCCeeeEEEeccC---CCeeEEEEecCCCCEE------------EEEeCCCeEEEEecccccCCCceeeEe-----
Q 011179 253 VYDLEANKLSLRILAHT---SDVNTVCFGDESGHLI------------YSGSDDNLCKVWDRRCLNVKGKPAGVL----- 312 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l------------~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 312 (491)
|||+.+++++..+.+|. ..+.+++|+ |++.++ ++|+.|++|++||.. .++.+..+
T Consensus 207 IWDl~TGk~l~tL~g~~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----tgk~l~v~~~~~p 281 (356)
T 2w18_A 207 IWNLKTGQLLKKMHIDDSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----TTLSVGVMLYCLP 281 (356)
T ss_dssp EEETTTCCEEEEEECCC---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETT----TTEEEEEEEECCC
T ss_pred EEECCCCcEEEEEcCCCcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECC----CCEEEEEEEeecc
Confidence 99999999999998654 467788998 577765 678899999999997 66665544
Q ss_pred ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc
Q 011179 313 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (491)
Q Consensus 313 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
.+|...+.+..++ +.++++++.|++|+|||+.+ ++.+.++.+|.
T Consensus 282 ~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t----------------------------------Gk~l~tL~gH~ 325 (356)
T 2w18_A 282 PGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL----------------------------------GQCTALLPPVS 325 (356)
T ss_dssp TTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCC-
T ss_pred CCCcceeEccccC--CCEEEEEcCCCcEEEEECCC----------------------------------CcEEEEecCCC
Confidence 3666665544444 77999999999999999988 56778888776
Q ss_pred eeEeeEEEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 393 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 393 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
.... ...+|||||++|++|+.|++|+|||+
T Consensus 326 ~~vv-----s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHW-----SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCC-----CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeE-----EEEEECCCCCEEEEEECCCcEEEecC
Confidence 3211 12368889999999999999999995
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.1e-26 Score=239.63 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=208.2
Q ss_pred CCceEEEEEcCCCCEEEEEEc-CC-----eEEEEECCCCeEEEEEeecCCCc----------------------eeEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT 175 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~----------------------~~v~~~ 175 (491)
...+.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999999999998 88 8999999988654433 222221 347899
Q ss_pred EECCCCCeEEEEECCCeEEEEECCCC---ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 011179 176 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 176 ~~sp~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~ 252 (491)
+|+|||++|++++. +.|++||+.++ ....+. .|...+.+++|+|||++|++++ ++.|+
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence 99999999999886 99999999887 432221 2334789999999999999987 46899
Q ss_pred EEECCCCeeeEEEeccCCC----------------eeEEEEecCCCCEEEEEeCCC------------------------
Q 011179 253 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------ 292 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~----------------v~~~~~~~~~~~~l~s~~~dg------------------------ 292 (491)
+||+.+++.......+... +..++|+ |+++.|++++.|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 9999988765444333332 4789998 7888888887665
Q ss_pred ---------eEEEEecccccCC-CceeeEec--cccCcEEEEEEcCCCCEEEEeeC-----CCcEEEEeCCCCCCccccc
Q 011179 293 ---------LCKVWDRRCLNVK-GKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 293 ---------~i~iwd~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~ 355 (491)
.|.+||+. . ++...... .|...+..++| |||++|++++. +..|++||+.+..
T Consensus 255 ~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------ 323 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------ 323 (741)
T ss_dssp BTTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------
T ss_pred CCCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------
Confidence 78889986 3 33333222 46778999999 99999987654 5679999998732
Q ss_pred CCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC-CCcEEE
Q 011179 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~ 434 (491)
....+..+.. ........+.|+|||+++++++.||.+.||.+. ++. ..
T Consensus 324 ----------------------------~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 ----------------------------QRVLAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp ----------------------------EEEEEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred ----------------------------eEEEEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 2222222110 000012356788999999999999977777664 455 77
Q ss_pred eeccCCCCeeee-EecCCCCeEEE-EeCCC--cEEEEcCCC
Q 011179 435 ALKYHTSPVRDC-SWHPSQPMLVS-SSWDG--DVVRWEFPG 471 (491)
Q Consensus 435 ~~~~h~~~v~~~-~~sp~~~~l~s-~~~Dg--~v~iw~~~~ 471 (491)
.+..|...|..+ .|+|+++.|+. ++.|+ .+++|++..
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 788888888887 59999997654 55555 899999865
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.1e-25 Score=218.15 Aligned_cols=299 Identities=12% Similarity=0.070 Sum_probs=218.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEC--CCCeEEEEEeecCCCceeEEEEEECC----CCCeEEEEEC-CCeEEEEECC
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASM-SPIVHIVDVG 199 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~-d~~i~iw~~~ 199 (491)
+.+++|+|||++|++++.|+.|++||+ .+++.+..+.. ...+..++|+| ||++|++++. +++|.+||..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 899999999999999999999999999 78766655432 23589999999 9999999885 8999999999
Q ss_pred CCccccccccccccccccccccCCCCce-ecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTV 275 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~ 275 (491)
+++........... . ....-|. ..+.++.++|++.. +++...++.|.+||+.+.+.+. .+ .+...+..+
T Consensus 257 t~~~~~~i~~~g~~----~--~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 257 TLEPKQIVSTRGMT----V--DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp TCCEEEEEECCEEC----S--SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred ccccceeecccCcc----c--CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence 88776554332100 0 0000021 26889999997765 5566678999999998866543 33 466778899
Q ss_pred EEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEecc----ccCcEEEEEEcCC-CCEEEEee-CCCcEEEEeCCCC
Q 011179 276 CFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGD-GRYLISNG-KDQAIKLWDIRKM 348 (491)
Q Consensus 276 ~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~ 348 (491)
.|+ +++++|+++ ..+++|.+||.. .++.+..+.. |......+ ++|+ +..++++. .|++|.+||+.+.
T Consensus 330 ~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 330 GWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 997 778876655 568999999998 6666666553 54433333 4676 66667765 5899999999862
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-------cCCe
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-------HDSC 421 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~ 421 (491)
..... ..+.+.++.++... .+...++|++++|++++ .+++
T Consensus 404 ~~~~~---------------------------~~~~v~~l~~~g~~------~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 404 NHPQY---------------------------AWKKVAELQGQGGG------SLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCTTT---------------------------BTSEEEEEECSCSC------CCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCchh---------------------------cCeEEEEEEcCCCC------ceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 21100 02566777766522 12336788999999987 3679
Q ss_pred EEEEECCCCcEE-Eee--------ccCCCCeeeeEecCCCCeEEEEe-----CCCcEEEEcCCCCCCC
Q 011179 422 VYVYDLVSGEQV-AAL--------KYHTSPVRDCSWHPSQPMLVSSS-----WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 422 i~iwd~~~~~~~-~~~--------~~h~~~v~~~~~sp~~~~l~s~~-----~Dg~v~iw~~~~~~~~ 475 (491)
|.+||+.+++.. ..+ ..+...+..+.|+|+|+.|+++. .|+.|.|||..+.+..
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 999999998876 443 34677899999999999888663 3799999999887643
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.5e-25 Score=213.85 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=199.5
Q ss_pred cccCCCCceEEEEEcC--------------CCCEEEEEEcC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEEC
Q 011179 119 PVDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~--------------dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (491)
.+.+|...+..+++++ .+..++.++.+ +.|++||++.+. ...+ ..|...|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~S 187 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEEC
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEc
Confidence 3567777777777765 26677766654 799999998542 2222 2345579999999
Q ss_pred CCCCeEEEEECCC---eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE-EEeCCC--eEE
Q 011179 179 PDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDD--CIY 252 (491)
Q Consensus 179 p~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~-~~~~dg--~i~ 252 (491)
|||++|++++.++ .|++||+.+++...+. .|...+.+++|+|||++|+ +++.++ .|+
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-----------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVA-----------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-----------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEEee-----------------cCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 9999999999875 9999999988764322 1333789999999999888 555554 499
Q ss_pred EEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-CC--eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC
Q 011179 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
+||+.+++. ..+..|...+.+++|+ |+++.|++++. ++ .|.+||+. .+. ...+..+...+.+++|+|+|+
T Consensus 251 ~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~ 323 (415)
T 2hqs_A 251 VMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGK 323 (415)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSS
T ss_pred EEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCC
Confidence 999998876 5677888899999998 78888888776 45 57777875 333 345566777899999999999
Q ss_pred EEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 330 YLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 330 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
+|++++.+ ..|++||+.+.. ...+..+. ...+++|
T Consensus 324 ~l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~ 361 (415)
T 2hqs_A 324 FMVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSL 361 (415)
T ss_dssp EEEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEE
T ss_pred EEEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEE
Confidence 99988764 589999998732 22232222 1234578
Q ss_pred cCCCcEEEEEecCC---eEEEEECCCCcEEEeeccCCCCeeeeEecCCCC
Q 011179 407 STGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 407 s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 453 (491)
+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 88999999988877 89999986 666778888999999999999754
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=2.8e-24 Score=199.24 Aligned_cols=284 Identities=13% Similarity=0.108 Sum_probs=191.4
Q ss_pred EEEcCCCCE-EEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCCcc-ccc
Q 011179 130 SQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESL 206 (491)
Q Consensus 130 ~~~s~dg~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~-~~~ 206 (491)
..|++++++ +++++.++.|.+||..+++....... +...+ .++|+|+++++++++. ++.|.+||..+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666665 66777899999999999876655432 23345 9999999997777766 88999999998875 222
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCC
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
... +..+..+++|+|++++|+++..++ .|.+||+.+++.+..+.. .....+++|+ ++++
T Consensus 79 ~~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~ 140 (331)
T 3u4y_A 79 IQE----------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGN 140 (331)
T ss_dssp EEE----------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSS
T ss_pred ccc----------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCC
Confidence 111 111333489999999999655553 899999999998877654 4556999998 6665
Q ss_pred -EEEEEeCCCe-EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 284 -LIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 284 -~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++++...++. |.+|++......................++|+|+|++++++ ..++.|.+||+.+....
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~--------- 211 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI--------- 211 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---------
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---------
Confidence 5556666688 99999862110000001222334567899999999966554 46889999999864320
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEECCCCcE--EEeec
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ--VAALK 437 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~ 437 (491)
..+..+.... ....++|+|+|++|++++ .++.|.+||+.+++. +..+.
T Consensus 212 ----------------------~~~~~~~~~~-------~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 212 ----------------------TLLNAVGTNN-------LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp ----------------------EEEEEEECSS-------CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred ----------------------ceeeeccCCC-------CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 1133333221 113346788999877665 477899999999877 44433
Q ss_pred cC----CCC---eeeeEecCCCCeEEEEe-CCCcEEEEcCCCCC
Q 011179 438 YH----TSP---VRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 473 (491)
Q Consensus 438 ~h----~~~---v~~~~~sp~~~~l~s~~-~Dg~v~iw~~~~~~ 473 (491)
.+ ..+ ...++|+||+++|++++ .++.|.+||+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 22 222 24589999999876555 56799999997654
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=3.4e-24 Score=200.50 Aligned_cols=281 Identities=12% Similarity=0.055 Sum_probs=210.2
Q ss_pred CCCceEEEEEcCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEE
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVH 194 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~ 194 (491)
....+..++|+|+|++|++++. ++.|.+||..+++.+....... .+..++|+|++++++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEE
Confidence 3456889999999999888774 5689999999987666654322 36779999999966655 4478999
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
+||..+++............. .......+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred EEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 999998876544332211000 001111378899999999888776 47899999999999888886566678
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc----ccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 347 (491)
.+++|+ ++++.+++++.++.|.+||+. .++.+..+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 999998 788999999999999999997 5565555543 4556888999999997776665 48999999987
Q ss_pred CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEE
Q 011179 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYD 426 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd 426 (491)
. ..+..+..... ..++|+|+++++++++ .++.|.+||
T Consensus 263 ~----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 263 G----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp C----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 3 33333332221 2346778999766665 689999999
Q ss_pred CCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCC
Q 011179 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
+.+++.+..+..+ ..+.+++|+||+++|+++..++
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999998888744 4789999999999777766554
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=6e-25 Score=204.72 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=184.7
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-CeEEEEECC--CCccccccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG--SGTMESLANVTEIHD 214 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~ 214 (491)
++++++.++.|++|+++.......... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 344447799999999963211111111 1233468889999999999998886 899999997 554432222111
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS- 289 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~- 289 (491)
+ ..+..++|+|++++|++++. ++.|.+||+. ..+....+. ....+.+++|+ ++++++++++
T Consensus 83 -----------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~ 148 (343)
T 1ri6_A 83 -----------P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS-PDNRTLWVPAL 148 (343)
T ss_dssp -----------S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC-TTSSEEEEEEG
T ss_pred -----------C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC-CCCCEEEEecC
Confidence 1 15678999999998877665 8899999994 334444443 34568999998 7788777776
Q ss_pred CCCeEEEEecccccCCCceee----Eecc-ccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 290 DDNLCKVWDRRCLNVKGKPAG----VLMG-HLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.|++||+... ++... .+.. ....+..++|+|+++++++++ .++.|.+|++.......
T Consensus 149 ~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~----------- 214 (343)
T 1ri6_A 149 KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----------- 214 (343)
T ss_dssp GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-----------
T ss_pred CCCEEEEEEecCC---CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-----------
Confidence 8999999999721 32221 2222 334788999999999776554 78999999996421100
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEECC--C--CcEEEeecc
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV--S--GEQVAALKY 438 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~ 438 (491)
.....................++|+|++++|+++. .++.|.+||+. + .+.+..+..
T Consensus 215 -------------------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 215 -------------------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp -------------------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred -------------------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 00111110000000000112346778998887554 78999999998 2 345555554
Q ss_pred CCCCeeeeEecCCCCeEEEEe-CCCcEEEEcCC
Q 011179 439 HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFP 470 (491)
Q Consensus 439 h~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~~ 470 (491)
+.. +.+++|+|++++|++++ .|+.|.+|+++
T Consensus 276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 544 89999999999888887 68999999665
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.4e-26 Score=236.46 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=201.6
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEECCCCCeEEEEECC---------Ce
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PI 192 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d---------~~ 192 (491)
..+.+++|+|||+++++ +.||+|++||+.+++..... ..+.. .|.+++|||||++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI---EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE---CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe---ccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 34677899999997776 68999999999988554332 23322 48899999999999999864 78
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
|.+||+.+++...+... .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 93 i~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp EEEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred EEEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 89999998875322211 123335778999999999999886 789999999988766555444433
Q ss_pred ------------------eEEEEecCCCCEEEEEeCCC----------------------------------eEEEEecc
Q 011179 273 ------------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRR 300 (491)
Q Consensus 273 ------------------~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~ 300 (491)
.+++|+ |+++.|++++.|+ .|++||+.
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 789998 8899998887543 78999987
Q ss_pred cccCCCceeeEeccc------cCcEEEEEEcCCCCEEEEeeC----CCcEEEEeCCCCCCcccccCCCccceeeeeeecC
Q 011179 301 CLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
.+.....+..+ ...+..++|+|||++|++... +..|++||+.+..
T Consensus 237 ----~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--------------------- 291 (723)
T 1xfd_A 237 ----GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--------------------- 291 (723)
T ss_dssp ----SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---------------------
T ss_pred ----CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---------------------
Confidence 44433444443 567899999999998877643 3579999998732
Q ss_pred CCCCccccCCCCceEEEEeCC-ceeEeeEEEEecccccCCCcEEEE--EecCC------eEEEEE-CCCCc--EEEeecc
Q 011179 371 PPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYT--GSHDS------CVYVYD-LVSGE--QVAALKY 438 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~--~~~~~~~ 438 (491)
....+..+ ..... .....+.|||||+.|+. +..++ .|++|| ..+++ +...+..
T Consensus 292 -------------~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 292 -------------CTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp -------------EEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred -------------ceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 22222111 10000 00125678999997775 44566 577788 34444 1455554
Q ss_pred CCCCeee-eEecCCCCeEEEEeCC---CcEEEEcCCCCC
Q 011179 439 HTSPVRD-CSWHPSQPMLVSSSWD---GDVVRWEFPGNG 473 (491)
Q Consensus 439 h~~~v~~-~~~sp~~~~l~s~~~D---g~v~iw~~~~~~ 473 (491)
+...+.. ++|+|||+.|+..+.+ +.+++|++....
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 4445554 6999999988766655 789999987543
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=5e-25 Score=200.57 Aligned_cols=257 Identities=15% Similarity=0.137 Sum_probs=187.6
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC-Ccccccccccccccccccc
Q 011179 141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 141 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~ 219 (491)
.++.++.|++||+.+++.... . .|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~-~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV-W---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE-E---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----------
T ss_pred CCCcceeEEEEeCCCCceeee-c---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----------
Confidence 345789999999998854432 2 2455799999999999999987 78999999988 765433211
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE-EEeCCCeE
Q 011179 220 AADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLC 294 (491)
Q Consensus 220 ~~~~~~h~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i 294 (491)
.+...+.+++|+|++++|++++. ...|++|++.+++. ..+.. ...+..++|+ ++++.|+ +++.++.+
T Consensus 82 -----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~s-pdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 82 -----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWS-PDGKSFTYCGIRDQVF 153 (297)
T ss_dssp -----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEEC-TTSSEEEEEEEETTEE
T ss_pred -----cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEEC-CCCCEEEEEECCCCce
Confidence 11236788999999999999983 24566666666553 34433 3458999998 6777666 78889999
Q ss_pred EEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCC
Q 011179 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
++|++.. .......+..+...+.+++|+|++++|++++ .++.+++|++....
T Consensus 154 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------------------------ 206 (297)
T 2ojh_A 154 DIYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------------------------ 206 (297)
T ss_dssp EEEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------------------------
T ss_pred EEEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC------------------------
Confidence 9999752 2334556677888999999999999888766 58899999886311
Q ss_pred CccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-----------CeEEEEECCCCcE--EEeeccCC
Q 011179 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQ--VAALKYHT 440 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~~h~ 440 (491)
..+..+..+.. ....+.|+|++++|++++.+ +.|++||+.+++. +..+.+|.
T Consensus 207 ---------~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 271 (297)
T 2ojh_A 207 ---------SSVERITDSAY------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ 271 (297)
T ss_dssp ---------SCEEECCCCSE------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred ---------CCcEEEecCCc------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence 23333333331 22345678899999988876 5699999988865 44455788
Q ss_pred CCeeeeEecCCCCeEEEEeCCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
..+..++|+|++++|++++.|.
T Consensus 272 ~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 272 GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccceECCCCCEEEEEEecc
Confidence 8999999999999888887654
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=3.1e-24 Score=228.69 Aligned_cols=304 Identities=12% Similarity=0.131 Sum_probs=216.7
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEcC------CeEEEEECCCCeEEEEEeecCCCceeE-------EEEEECCCC
Q 011179 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV-------TDTSLSPDQ 181 (491)
Q Consensus 115 ~~~~~~~~h~~~i~~~~~s~dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v-------~~~~~sp~~ 181 (491)
.....+..|...+.+++|||||++||+++.+ ..|++|++.++. .. ....|...+ ..++|+|||
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTC
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCC
Confidence 3456778899999999999999999987653 379999999874 22 234566677 899999999
Q ss_pred CeEEEEECC------CeEEEEECCCCccccccccccc-------------------------------------------
Q 011179 182 RHLVYASMS------PIVHIVDVGSGTMESLANVTEI------------------------------------------- 212 (491)
Q Consensus 182 ~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~------------------------------------------- 212 (491)
+.+++++.+ ..|.+|++.++....+......
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 966666644 4688888876654322111000
Q ss_pred --------------ccccccccc-----------C-------CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011179 213 --------------HDGLDFSAA-----------D-------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 213 --------------~~~~~~~~~-----------~-------~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
.+.+-+... . ...|. .+...+|+|||++|+++ .++.|++||+....
T Consensus 199 l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred CcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence 000000000 0 01111 24466888888888777 47888888884443
Q ss_pred eeEEEec-----------cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC-cEEEEEEcCCC
Q 011179 261 LSLRILA-----------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDG 328 (491)
Q Consensus 261 ~~~~~~~-----------h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 328 (491)
. ..+.. |...+.+++|+||+++.|++++ ++.|.+|++. .+. ...+..|.. .+..++|+ +|
T Consensus 277 l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----~~~-~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 277 I-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----GTY-VLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp E-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----SSB-EEECSCCSCEEEEEECSS-SE
T ss_pred e-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----CCc-eEEccCCCcceEEeeeEc-CC
Confidence 3 34433 3447899999736777777777 7899999986 333 344666777 89999999 99
Q ss_pred CEEEEeeCCCcEE-EEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 329 RYLISNGKDQAIK-LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 329 ~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
+.|++++.++.+. +||+... ....+.++.. ....++||
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~-----------------------------------~~~~l~~~~~------~~~~~~~S 387 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTG-----------------------------------KAEKFEENLG------NVFAMGVD 387 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTC-----------------------------------CEEECCCCCC------SEEEEEEC
T ss_pred CeEEEEECCCceEEEEECCCC-----------------------------------CceEecCCcc------ceeeeEEC
Confidence 9999998888888 8898762 1222222221 12344688
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCC----------cEEEEcCCCCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG----------DVVRWEFPGNG 473 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg----------~v~iw~~~~~~ 473 (491)
|||++|++++.++.|++||+.+++....+..|.+.+.+++|+|||++|++++.++ .|++||+.++.
T Consensus 388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 388 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 8999999999999999999999998888878999999999999999999887654 89999998754
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=6.3e-24 Score=217.72 Aligned_cols=293 Identities=11% Similarity=0.061 Sum_probs=201.3
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC----
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---- 200 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~---- 200 (491)
..|.+++|||| ++++.+ .++.|++||+.+++.... . .+...+.+++|+|||++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~---~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-F---DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-E---CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-c---CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 666665 469999999998854332 2 223357889999999999985 689999999988
Q ss_pred -Ccccccccccccc--ccccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------------------
Q 011179 201 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------------------- 246 (491)
Q Consensus 201 -~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------------------------------- 246 (491)
++...+....... .+.. ....+...+.+++|+|||++|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 6654332211100 0000 0000011257899999999999987
Q ss_pred --CCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCC-----eEEEEecccccCCCceeeEec-c-c
Q 011179 247 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLM-G-H 315 (491)
Q Consensus 247 --~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~-~ 315 (491)
.+..|++||+.+++...... .|...+.+++|+ ++++.|++++.++ .|++||+. .+.....+. . +
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETD 305 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEEC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccC
Confidence 44679999999987644332 466789999998 8899888887765 89999987 442232222 1 2
Q ss_pred cC---cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC
Q 011179 316 LE---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 316 ~~---~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
.. .+..+.|+| +|+++++++.|+.++||++... +..+..+..
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---------------------------------~~~~~~l~~ 352 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---------------------------------GRLIRQVTK 352 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---------------------------------SCEEEECCC
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---------------------------------CCEEEecCC
Confidence 21 246789999 9999999999999999987521 133333433
Q ss_pred CceeEeeEEEEecccccCCCcEEEEEec-CC----eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC----
Q 011179 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---- 461 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D---- 461 (491)
+.... .. .+.|+|+++.|+.++. ++ .|+.||+.+++ +..+. |...+.+++|+|||++|+.++.+
T Consensus 353 ~~~~v--~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p 425 (706)
T 2z3z_A 353 GEWEV--TN---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVP 425 (706)
T ss_dssp SSSCE--EE---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred CCeEE--Ee---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCC
Confidence 32111 11 1367789987766555 44 78888887776 34444 67789999999999988776444
Q ss_pred CcEEEEcCCCCC
Q 011179 462 GDVVRWEFPGNG 473 (491)
Q Consensus 462 g~v~iw~~~~~~ 473 (491)
+.|++||+.+++
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999987764
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=3.5e-23 Score=192.24 Aligned_cols=275 Identities=12% Similarity=0.078 Sum_probs=195.4
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEE-EECCCeEEEEECCCCcccccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
++|++++.++.|.+||+.+++.+........ ...+..++|+|+++++++ +..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---
Confidence 4789999999999999999876665432221 003678999999987655 45578999999998876543322110
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCC
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
..|...+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+ ++++
T Consensus 78 --------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~ 147 (337)
T 1pby_B 78 --------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGS 147 (337)
T ss_dssp --------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSS
T ss_pred --------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCC
Confidence 00222456789999999998886 579999999999988777654 4567889997 7788
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC------------------------c
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------------------------A 339 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg------------------------~ 339 (491)
+|+++ ++.|.+||+. .++....+..+... ..+.|+|+++.++..+..+ .
T Consensus 148 ~l~~~--~~~i~~~d~~----~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPE----AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp CEEEE--SSSEEEEETT----TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred EEEEe--CCeEEEEECC----CCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 77777 6899999997 55555555433310 1237899998776555433 3
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 419 (491)
|.+||+.+.... ...+..+. .....++++|++++++++ +
T Consensus 221 v~~~d~~~~~~~---------------------------------~~~~~~~~------~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 221 LLTMDLETGEMA---------------------------------MREVRIMD------VFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp EEEEETTTCCEE---------------------------------EEEEEECS------SCEEEEEECTTSSEEEEE--E
T ss_pred eEEEeCCCCCce---------------------------------EeecCCCC------CceeeEEECCCCCEEEEe--C
Confidence 567777652210 11111111 111234678899999988 7
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+..++.
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 99999999999988877643 5678999999999999999999999999987653
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=1.5e-23 Score=209.80 Aligned_cols=276 Identities=14% Similarity=0.037 Sum_probs=191.3
Q ss_pred CCceEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC---CCeEEEEECC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 199 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~ 199 (491)
..+|++++|+|||++||+++. ||+++||+++++.. .+ ....+...+..++|+|| +.+++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999998887 99999999977643 22 22233347999999999 77777665 4455665543
Q ss_pred C---CccccccccccccccccccccCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 011179 200 S---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 200 ~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 275 (491)
. +....+... . .+...+|+|+++. +++...++.+.+||+.+++..... .+.. .++
T Consensus 97 ~~~~g~~~~l~~~--------------~----~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--~~~ 155 (582)
T 3o4h_A 97 TSRPGEEQRLEAV--------------K----PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--FGF 155 (582)
T ss_dssp TTSTTCCEECTTS--------------C----SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--CEE
T ss_pred ccCCCccccccCC--------------C----CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--ceE
Confidence 2 221111110 0 2335578887753 333334444569999988765444 3333 889
Q ss_pred EEecCCCCEEEEEeCC----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCC
Q 011179 276 CFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMS 349 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 349 (491)
+|+ |+|++|++++.+ +.|++||+. .++ ...+..|...+..++|+|||+.|+++..++ .|++||+.+..
T Consensus 156 ~~s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 156 VSD-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEE-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EEC-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 998 789999988877 789999986 333 346778888899999999999999888888 89999998733
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE--EEEecccccCCCcEEEEEecCCeEEEEEC
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI--RCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~dg~i~iwd~ 427 (491)
. . .+.++....... .....+.|||||.++++++.++.+++|++
T Consensus 230 ~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 V----------------------------------E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E----------------------------------E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E----------------------------------E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 1 1 222222100000 00011238889999999999999999999
Q ss_pred CCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCc---EEEEcCCC
Q 011179 428 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPG 471 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~---v~iw~~~~ 471 (491)
|+.+. .+.+.|.+++|+ +++++++++.+.. |.+|+...
T Consensus 275 --g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 --GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66554 344678999999 9999998887744 77777654
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=5.6e-23 Score=219.10 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=221.0
Q ss_pred CCCceEEEEEc-CCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce-eEEEEEECCCCCeEEEEECCCeEE-EEECC
Q 011179 123 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG 199 (491)
Q Consensus 123 h~~~i~~~~~s-~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~-iw~~~ 199 (491)
|...+.+++|| |||++|++++ ++.|.+|++.++.... ...+.. .+..++|+ |++.|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 44579999999 9999999887 7899999998874332 234444 79999999 999999999888898 99988
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+++...+. +|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S- 429 (1045)
T 1k32_A 368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS- 429 (1045)
T ss_dssp TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-
T ss_pred CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-
Confidence 76543221 233478999999999999999999999999999998877777899999999998
Q ss_pred CCCCEEEEEeCCC----------eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 280 ESGHLIYSGSDDN----------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 280 ~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
|++++|++++.++ .|++||+. .++ ...+..|...+..++|+|+|++|++++.++...+|+.....
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 8899888887654 89999996 444 66777888889999999999999999999888999876432
Q ss_pred CcccccCCCccceeeeeeecCCCCCccc---------------cCC-CCceEEEEeCCceeEeeEEEEecccccCCCcEE
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDL---------------KHP-CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
.... . ......+.+.+..... ... ....+..+..+.. ......++||++++
T Consensus 505 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~------~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 505 FSFE--V-----VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG------DYRMIIPLESSILI 571 (1045)
T ss_dssp EECC--S-----CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB------CEEEEEECSSEEEE
T ss_pred cccc--c-----CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC------ChhheEEcCCCeEE
Confidence 1100 0 0001111111111100 000 0011222222221 12233567799877
Q ss_pred EE-------------EecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 414 YT-------------GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 414 ~~-------------~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
++ ......|++||+.+++..... ..+..++|||||+.|++++.| .|++||+..+.
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 122457999999888754332 568899999999999999866 79999998776
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=8.2e-23 Score=190.70 Aligned_cols=277 Identities=11% Similarity=0.053 Sum_probs=176.0
Q ss_pred CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC---CCeEEEEECCCCcccccccccccccccccc
Q 011179 145 ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
++.|.+|+++ ++........ .+...+..++|+|+++ |++++. ++.|.+|++.+++...+.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-------- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-------- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE--------
T ss_pred CCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec--------
Confidence 4567777665 4533221111 1223577899999999 555554 5899999997766433322111
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Ce--eeEEEec---------cCCCeeEEEEecCCCCEEE
Q 011179 220 AADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NK--LSLRILA---------HTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 220 ~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~--~~~~~~~---------h~~~v~~~~~~~~~~~~l~ 286 (491)
+...+..++|+|||++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+ +++++++
T Consensus 84 ------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v 156 (347)
T 3hfq_A 84 ------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAV 156 (347)
T ss_dssp ------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEE
T ss_pred ------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEE
Confidence 222577899999999888888 679999999963 22 2233321 12247889998 6777777
Q ss_pred EEeCCCeEEEEecccccCCCceeeEecc-ccCcEEEEEEcCCCCEEEE-eeCCCcEEEEeCCCCCCcccccCCCccceee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+...++.|.+|++.... .......+.. .......++|+|+|+++++ +..++.|.+|++.......
T Consensus 157 ~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------ 223 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------ 223 (347)
T ss_dssp EETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------
T ss_pred EeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------
Confidence 77778999999986111 1111222222 2236778999999996665 5567899999987421000
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE-EecCCeEEEEECCC---CcEEEeeccCC
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS---GEQVAALKYHT 440 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~---~~~~~~~~~h~ 440 (491)
..+..+...............++|+|||++|++ ...++.|.+|++.. .+.+..+..+.
T Consensus 224 ------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 224 ------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp ------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred ------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 011111111100000011234468889998855 45589999999872 24566666666
Q ss_pred CCeeeeEecCCCCeEEEEeCC-CcEEEEcCC
Q 011179 441 SPVRDCSWHPSQPMLVSSSWD-GDVVRWEFP 470 (491)
Q Consensus 441 ~~v~~~~~sp~~~~l~s~~~D-g~v~iw~~~ 470 (491)
..+..++|+|||++|++++.+ +.|.+|+++
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 778999999999988887764 899999654
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.3e-23 Score=216.58 Aligned_cols=293 Identities=13% Similarity=0.099 Sum_probs=200.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
.|.+++|||||++|++++. +.|++||+.++. ... ....+...+..++|+|||++|++++ ++.|++||+.+++.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 4889999999999999886 899999998861 122 2234455799999999999999987 56999999998775
Q ss_pred cccccccccc--ccc-cccccCCCCceecEEEEEEcCCCCEEEEEeCCC-------------------------------
Q 011179 204 ESLANVTEIH--DGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------------------------------- 249 (491)
Q Consensus 204 ~~~~~~~~~~--~~~-~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg------------------------------- 249 (491)
..+....... .+. .+... .....+.+++|+|||++|++++.|+
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~---~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVAD---EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHH---HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEeccCCccceeccccceeee---eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 4433211000 000 00000 0000246799999999999987765
Q ss_pred --eEEEEECCC-CeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeC-----CCeEEEEecccccCCCceeeEeccccC--
Q 011179 250 --CIYVYDLEA-NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLNVKGKPAGVLMGHLE-- 317 (491)
Q Consensus 250 --~i~vwd~~~-~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 317 (491)
.|++||+.+ ++...... .|...+..++| ++++.|++++. +..|++||+. .++....+..+..
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPTW 335 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSSC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCCc
Confidence 899999988 77644332 37778999999 46777776543 5689999997 5555555554443
Q ss_pred --cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 318 --GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 --~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.+..++|+|||+++++++.||.++||.+... +. ...+..+...
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~---------------------------------~~-~~~l~~~~~~- 380 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK---------------------------------GK-AAALTHGNWS- 380 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSS---------------------------------SC-EEESCCSSSC-
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCC---------------------------------CC-eeeeeecceE-
Confidence 4468899999999999999998888876531 12 3333333211
Q ss_pred eeEEEEecccccCCCcEEEE-EecCC--eEEEEECCC-CcEEEeeccCCCCeeeeEecCCCCeEEEEeCC----CcEEEE
Q 011179 396 TLIRCHFSPVYSTGQKYIYT-GSHDS--CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD----GDVVRW 467 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~-~~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D----g~v~iw 467 (491)
+... ..|+|+++.|+. ++.++ .++||++.. +..+..+.. ...+..++|+||+++|+....+ +.+.+|
T Consensus 381 -v~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 381 -VDEL---LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp -EEEE---EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred -EEeE---eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 1111 136779987754 44455 899999864 555666664 6678999999999987766443 468888
Q ss_pred cCCCC
Q 011179 468 EFPGN 472 (491)
Q Consensus 468 ~~~~~ 472 (491)
+....
T Consensus 456 ~~~~~ 460 (741)
T 2ecf_A 456 RANGE 460 (741)
T ss_dssp ETTSC
T ss_pred EcCCC
Confidence 87543
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.9e-23 Score=214.81 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=193.2
Q ss_pred ccccCCCC---ceEEEEEcCCCCEEEEEEcC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEE
Q 011179 118 WPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 118 ~~~~~h~~---~i~~~~~s~dg~~la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 185 (491)
..+..|.. .|.+++|||||++|++++.+ +.|++||+.++.. ..+.....+...+..++|||||+.|+
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence 44445554 49999999999999999764 7889999998854 33333334444588899999999999
Q ss_pred EEECCCeEEEEECCCCccccccccccccccccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC-------
Q 011179 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD------- 249 (491)
Q Consensus 186 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~~~~l~~~~~dg------- 249 (491)
+++. +.|++|++.+++...+..... ....+ .++. ..+.+++|+|||++|++++.++
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~--~~~~~-----~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGK--EGVIY-----NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCB--TTTEE-----EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred EEEC-CeEEEEECCCCceEEEecCCC--CCceE-----CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 9886 799999999877644332110 00000 0000 1247899999999999987543
Q ss_pred ---------------------------eEEEEECCCCeeeEEEecc------CCCeeEEEEecCCCCEEEEEeC----CC
Q 011179 250 ---------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGSD----DN 292 (491)
Q Consensus 250 ---------------------------~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~~----dg 292 (491)
.|++||+.+++....+..+ ...+..++|+ |++++|++.+. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeE
Confidence 7999999988865666544 5678999998 78888876643 35
Q ss_pred eEEEEecccccCCCceeeEeccc-cCcE----EEEEEcCCCCEEEE--eeCCC------cEEEEeC-CCCCCcccccCCC
Q 011179 293 LCKVWDRRCLNVKGKPAGVLMGH-LEGI----TFIDSRGDGRYLIS--NGKDQ------AIKLWDI-RKMSSNASCNLGF 358 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~s--~~~dg------~i~iwd~-~~~~~~~~~~~~~ 358 (491)
.|++||+. .++....+..+ ...+ ..++|+|||+.|+. +..++ .|.+||+ ......
T Consensus 281 ~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~------- 349 (723)
T 1xfd_A 281 ILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND------- 349 (723)
T ss_dssp EEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-------
T ss_pred EEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-------
Confidence 79999987 55554444333 3333 37899999997775 44666 4666773 331100
Q ss_pred ccceeeeeeecCCCCCccccCCCCceEEEEe-CCceeEeeEEEEecccccCCCcEEEEEecC---CeEEEEECCCCc--E
Q 011179 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE--Q 432 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~ 432 (491)
....+. ++... ...+.|||||+.|+..+.+ +.+++|++.... .
T Consensus 350 -------------------------~~~~l~~~~~~~------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 350 -------------------------NIQSITSGDWDV------TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp -------------------------CCCBSCCSSSCE------EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred -------------------------ceeEeecCCeEE------EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 001111 11111 1113678899999876655 789999986432 3
Q ss_pred EEeecc---CCCCeeeeEecCCCCeEEEEe
Q 011179 433 VAALKY---HTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 433 ~~~~~~---h~~~v~~~~~sp~~~~l~s~~ 459 (491)
...+.. |...+..++|+|||++|+...
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 344443 667789999999999777653
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=2.4e-23 Score=213.39 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=194.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEE-EEEeecCCC--------------ceeEEEEEECCCCCeEEEEECCC
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSL--------------RWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~~~d~ 191 (491)
+..+.|+ |+.+++++.++ | +||+.+++.+ ..+...... ...|.+++|+|| +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4446777 66777777787 8 9999998652 333222111 135999999999 6666664 59
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEEEe
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRIL 266 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~ 266 (491)
.|++||+.+++...+... ...+.+++|+|||++|+++ .++.|++||+.+ ++......
T Consensus 102 ~i~~~d~~~~~~~~l~~~-----------------~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDT-----------------NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp EEEEEETTTTEEEEEECC-----------------TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred EEEEEECCCCceEEccCC-----------------cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence 999999988865433221 1246678999999999985 689999999998 76654333
Q ss_pred ccCCC--------------eeEEEEecCCCCEEEEEe---------------------------------CCCeEEEEec
Q 011179 267 AHTSD--------------VNTVCFGDESGHLIYSGS---------------------------------DDNLCKVWDR 299 (491)
Q Consensus 267 ~h~~~--------------v~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~ 299 (491)
.+... +.++.|+ |++++|++++ .+..|++||+
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 33332 4889998 8899999887 4568999999
Q ss_pred ccccCCCceeeEe--ccccCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCCCCcccccCCCccceeeeeeecCCC
Q 011179 300 RCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 300 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
. .+...... ..|...+.+++|+|||+.|++++.++ .|.+||+.+..
T Consensus 243 ~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----------------------- 295 (706)
T 2z3z_A 243 A----TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----------------------- 295 (706)
T ss_dssp T----TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------------------
T ss_pred C----CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------------------
Confidence 7 44433222 24667899999999999999887765 89999998731
Q ss_pred CCccccCCCCceEEEEeCCceeEeeEEEEecccccC--CCcEEEEEecCCeEEEEECC-CCcEEEeeccCCCCeee-eEe
Q 011179 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST--GQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRD-CSW 448 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-~~~ 448 (491)
....+..... .........+.|+| ||+++++++.|+.++||++. ++..+..+..|...+.. ++|
T Consensus 296 -----------~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 296 -----------FVRTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp -----------EEEEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred -----------eeeEEEEccC-CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 1111110000 00000113457899 99999999999999999876 67778888888888887 799
Q ss_pred cCCCCeEEEEeC-CC----cEEEEcCCCCC
Q 011179 449 HPSQPMLVSSSW-DG----DVVRWEFPGNG 473 (491)
Q Consensus 449 sp~~~~l~s~~~-Dg----~v~iw~~~~~~ 473 (491)
+|+++.|+.++. ++ .|..|++.++.
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999997766554 44 56677766543
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=3.6e-22 Score=185.84 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=181.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcC-CeEEEEECC--CCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 197 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~ 197 (491)
.|...+.+++|+|+|++|++++.+ +.|.+|+++ ++..... .....+. .+..++|+|++++|++++. ++.|.+|+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 456788899999999999988886 999999997 5532221 1111222 6889999999998877765 78999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CeeeE----EEec-cCC
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL----RILA-HTS 270 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~~~~----~~~~-h~~ 270 (491)
+..+.......... ....+.+++|+|++++|++++ .++.|++||+.+ ++... .+.. ...
T Consensus 113 ~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 113 LEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred CCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 95332211111110 011477899999999888887 899999999987 55432 2222 345
Q ss_pred CeeEEEEecCCCCEEEE-EeCCCeEEEEecccccCCCceeeEec---cc---cCcEEEEEEcCCCCEEEE-eeCCCcEEE
Q 011179 271 DVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLM---GH---LEGITFIDSRGDGRYLIS-NGKDQAIKL 342 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~i~~~~~~~~~~~l~s-~~~dg~i~i 342 (491)
.+..++|+ ++++++++ +..++.|.+||+.............. .. ...+..++|+|++++|++ +..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899997 77776654 45889999999852111111122221 11 235678999999988874 457899999
Q ss_pred EeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCe
Q 011179 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC 421 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~ 421 (491)
||+...... ...+..+..+.. ...++|+|++++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTETQ-------PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSSS-------CCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCCc-------cceEEECCCCCEEEEecCCCCe
Confidence 999731100 012222222221 12346788999888888 5799
Q ss_pred EEEEE--CCCCc--EEEeeccCCCCeeeeEecCCCC
Q 011179 422 VYVYD--LVSGE--QVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 422 i~iwd--~~~~~--~~~~~~~h~~~v~~~~~sp~~~ 453 (491)
|.+|+ ..+++ .+..+.. .....+++|.|+.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 99995 44664 3444443 24567788877544
No 147
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=2.2e-22 Score=190.91 Aligned_cols=291 Identities=15% Similarity=0.111 Sum_probs=192.8
Q ss_pred cccCCCCceEE-----EEEcCCCCEEEEEEc-CC--eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC
Q 011179 119 PVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 119 ~~~~h~~~i~~-----~~~s~dg~~la~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 190 (491)
.+..|...... .+|||||++|+.++. +| .|.+||+.+++... ....+...+..+.|+||++.|++++.+
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34445555555 789999999998887 66 48889998885433 223343344467899999999999999
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEE--EEEEcCCCCEEEEE----------------------e
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF--SLKFSTDGRELVAG----------------------S 246 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~~~~l~~~----------------------~ 246 (491)
+.|++||+.+++...+..... ..+. ...+++++++++.. .
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPA----------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCT----------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred CeEEEEECCCCcceeeeechh----------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 999999999887654433211 0222 23458999988743 2
Q ss_pred CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC-CCCEEEEEeCC------CeEEEEecccccCCCceeeEecccc--C
Q 011179 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHL--E 317 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~--~ 317 (491)
.+..|++||+.+++. ..+..+...+..+.|+ | +++.|+....+ ..|.++|+. +.....+..+. .
T Consensus 166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEGE 238 (388)
T ss_dssp CCEEEEEEETTTCCE-EEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTTE
T ss_pred CcceEEEEECCCCce-EEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCCc
Confidence 447899999998865 4455677789999998 6 78888777653 367777764 33344444444 3
Q ss_pred cEEEEEEcCCCCEEEEeeC-CC----cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc
Q 011179 318 GITFIDSRGDGRYLISNGK-DQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 392 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
.+..+.|+|||+.|+..+. ++ .|.+||+.+... ..+..+.++.
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~~~~ 286 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMPACS 286 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEECCEE
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCCCce
Confidence 5778899999998765443 22 399999987431 1122222210
Q ss_pred eeEeeEEEEecccccCCCcEEEEE---------ecCCeEEEEECCCCcEEEeeccCCC-----------CeeeeEecCCC
Q 011179 393 VLRTLIRCHFSPVYSTGQKYIYTG---------SHDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQ 452 (491)
Q Consensus 393 ~~~~~~~~~~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~sp~~ 452 (491)
..........|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|||
T Consensus 287 ---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 287 ---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp ---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred ---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCC
Confidence 000001112577899888754 4466899999988765 34544555 57889999999
Q ss_pred CeEEEEe-CCCcEEEEcCCC
Q 011179 453 PMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 453 ~~l~s~~-~Dg~v~iw~~~~ 471 (491)
+.|+.++ .+|...+|.++-
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SEEEEEECTTSSCEEEEEEC
T ss_pred CEEEEEecCCCceeEEEEEC
Confidence 9777655 577777776654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=3.9e-22 Score=181.38 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=172.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC--CC--e
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SP--I 192 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~--~ 192 (491)
..+..|...|.+++|+|||++|++++ ++.|++||+.+ ++.... ....+...+.+++|+|++++|++++. ++ .
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 34566889999999999999999986 78999999998 644322 22222357889999999999999983 34 4
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCC-CeeeEEEeccCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLRILAHTS 270 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~h~~ 270 (491)
|.+|+..++....+.. ...+..++|+|++++|+ ++..++.+.+|++.. ......+..+..
T Consensus 112 l~~~~~~~~~~~~~~~------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTK------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp EEEEETTCCCCEECCS------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred EEEEECCCCceEEeec------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 5555555544322111 11478899999999887 677899899998532 233456667888
Q ss_pred CeeEEEEecCCCCEEEEEe-CCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----------C
Q 011179 271 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----------Q 338 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----------g 338 (491)
.+.+++|+ ++++.|+.++ .++.+++|++.. .......+..|...+..+.|+|++++|++++.+ +
T Consensus 174 ~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 174 RNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred ccccceEC-CCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 99999998 7788777665 589999999852 344566777788889999999999999988765 5
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
.|.+||+.+... ..+..+.++.. ....+.|+|++++|++++.
T Consensus 250 ~l~~~d~~~~~~--------------------------------~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 250 RVQLMDMDGGNV--------------------------------ETLFDLFGGQG------TMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEEEETTSCSC--------------------------------EEEEEEEESTT------TSCSCCBCTTSSEEEEEEE
T ss_pred EEEEEecCCCCc--------------------------------eeeeccCCCCc------ccccceECCCCCEEEEEEe
Confidence 699999976321 11222222221 1245678999999998877
Q ss_pred CC
Q 011179 419 DS 420 (491)
Q Consensus 419 dg 420 (491)
+.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=6.4e-22 Score=184.66 Aligned_cols=282 Identities=14% Similarity=0.094 Sum_probs=183.6
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCcccccc
Q 011179 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 129 ~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~ 207 (491)
.++++++++++++++.++.|++||+.+++.+....... ...+..++|+|++++++++ ..++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 35688899999999999999999999987665543322 1136789999999876554 46889999999988765433
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCee---eEEEeccCCCe
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKL---SLRILAHTSDV 272 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~h~~~v 272 (491)
...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+ .+...+
T Consensus 82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 150 (349)
T 1jmx_B 82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQV 150 (349)
T ss_dssp ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSC
T ss_pred Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcc
Confidence 221100 0012246789999999999998865 8999999988543 3333 344568
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC------------------------cEEEEEEcCCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE------------------------GITFIDSRGDG 328 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~ 328 (491)
.+++|+ ++++ +++++. .|.+||+. .++.+..+..+.. ....+++++++
T Consensus 151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 151 YLMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 899997 7777 555544 49999987 4555444432210 23345555544
Q ss_pred CEEEEeeCC-CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 329 RYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 329 ~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
......... ..+..+|..+.. +..+.... ........+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~----~~~~~~~~~~s 263 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFAD----LTELYFTGLRS 263 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEE----CSSCEEEEEEC
T ss_pred cCCccccccceeEEEEeccCCc-----------------------------------EEeccccc----CCCcceeeEec
Confidence 211110000 112223443311 11111000 00122344788
Q ss_pred C-CCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 408 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 408 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
| ++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+...+
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 8 99999988 88999999999998887763 3457899999999988888889999999997754
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=3e-21 Score=184.74 Aligned_cols=213 Identities=16% Similarity=0.124 Sum_probs=154.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------eEEEEE--eecCCCceeEEEEEECCCCCeEE----EE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQKD--ILAKSLRWTVTDTSLSPDQRHLV----YA 187 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~----------~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~----~~ 187 (491)
...++.+++++++.+|++++.++ ++||+.... ..+... .....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 889875321 001100 00112345799999999999999 67
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
+.|+.|+|||+.++.......... ........+|...|.+++|+|+ +.+|++++.||+|++||++++..+....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRP-----FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCC-----SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcce-----eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 889999999987541100000000 0001122357789999999997 8899999999999999999987777777
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-------ccCcEEEEEEcCCCCEEEEe-eCCC
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISN-GKDQ 338 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~-~~dg 338 (491)
+|...|.+++|+ +++++|++|+.||.|++||++ +.....+.. |...|.++.|++++.++++. ..+|
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 899999999998 779999999999999999986 222333322 23479999999988777543 3343
Q ss_pred ------cEEEEeCCCC
Q 011179 339 ------AIKLWDIRKM 348 (491)
Q Consensus 339 ------~i~iwd~~~~ 348 (491)
.+++|++++.
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999864
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3.9e-21 Score=178.04 Aligned_cols=272 Identities=9% Similarity=0.054 Sum_probs=175.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeE-EEEEeecCCCceeEEEEEECCCCCeEEEEECCC---eEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHI 195 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~i 195 (491)
..+...+ +++|+|||++|++++. ++.|.+||+.++.. ...... +..+..+++|+|++++|+++..++ .|.+
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v 112 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE---GQSSMADVDITPDDQFAVTVTGLNHPFNMQS 112 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE---CSSCCCCEEECTTSSEEEECCCSSSSCEEEE
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc---CCCCccceEECCCCCEEEEecCCCCcccEEE
Confidence 3345566 9999999997776665 88999999998865 333222 222344499999999999555442 8999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCe-EEEEECCCCeeeE----EEeccC
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC-IYVYDLEANKLSL----RILAHT 269 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~-i~vwd~~~~~~~~----~~~~h~ 269 (491)
||+.+++........ ..+.+++|+|+|++|+++ ..++. |.+|++.....+. ......
T Consensus 113 ~d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 113 YSFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 999988764432211 146899999999866555 55577 9999987644331 222445
Q ss_pred CCeeEEEEecCCCCEE-EEEeCCCeEEEEecccccCCCce---eeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEe
Q 011179 270 SDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd 344 (491)
..+..++|+ ++++++ +++..++.|.+||+. .++. +..+.. ...+..++|+|+|+++++++ .++.|.+||
T Consensus 176 ~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 176 TRPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp SSEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred CCccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence 568999998 777755 555578999999997 4444 555543 36678899999999776554 577899999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCcee-EeeEEEEecccccCCCcEEEEEec-CCeE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSH-DSCV 422 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~-dg~i 422 (491)
+.+.... .+..+...... .........++|+|++++|++++. ++.|
T Consensus 250 ~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 250 QLSGTLS--------------------------------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp TTTTEEE--------------------------------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred CCCCcee--------------------------------eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 9873320 01111111000 000000022368889998876665 5699
Q ss_pred EEEECCCCcEEEeeccCCCCeeeeEecCCC
Q 011179 423 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 452 (491)
.+||+.... +..+......-....++|+.
T Consensus 298 ~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 298 KVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred EEEEecCCc-ccceecccccCCeEEECCcc
Confidence 999997644 33343333332234444543
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=209.92 Aligned_cols=283 Identities=12% Similarity=0.093 Sum_probs=189.0
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEECCCCCeEEEEEC---------CCeEEEE
Q 011179 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (491)
Q Consensus 129 ~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~---------d~~i~iw 196 (491)
.++|+|||++++++ .|+.|++||+.+++..... ..+.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL---SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE---CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE---ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 57999999655554 6999999999998654322 22221 3889999999999999876 6899999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCe---
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV--- 272 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v--- 272 (491)
|+.+++......+. ..+..++|||||+.|+++. ++.|++||+.+++..... .++...|
T Consensus 96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 99988762111111 1577899999999999885 789999999888764322 1222222
Q ss_pred --------------eEEEEecCCCCEEEEEeCCC----------------------------------eEEEEecccccC
Q 011179 273 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRCLNV 304 (491)
Q Consensus 273 --------------~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~ 304 (491)
.+++|+ |+++.|++++.|. .|++||+.
T Consensus 158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---- 232 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---- 232 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----
T ss_pred cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----
Confidence 589998 8899999887652 78899986
Q ss_pred CCcee--------eEeccccCcEEEEEEcCCCCEEEEeeCC----CcEEEEe----CCCCCCcccccCCCccceeeeeee
Q 011179 305 KGKPA--------GVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD----IRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 305 ~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
.+... ..+.+|...+..++|+||++++++.... ..|.+|| +.+........
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------------- 299 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------------- 299 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-------------
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-------------
Confidence 33321 2234677889999999998877764432 2488888 65532111000
Q ss_pred cCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE--EecCC--eEEEEECCCCcEEEeeccCCCCee
Q 011179 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDS--CVYVYDLVSGEQVAALKYHTSPVR 444 (491)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~ 444 (491)
....++...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+.
T Consensus 300 -----------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 300 -----------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp -----------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred -----------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 000111110000 00014578889996654 43444 68888887776 445655666788
Q ss_pred eeEecCCCCeEEEEeCC-----CcEEEEcCCC
Q 011179 445 DCSWHPSQPMLVSSSWD-----GDVVRWEFPG 471 (491)
Q Consensus 445 ~~~~sp~~~~l~s~~~D-----g~v~iw~~~~ 471 (491)
.+.++ +++.|+..+.+ +.+++|.+..
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 88877 88877766654 8899998765
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=9.9e-21 Score=177.60 Aligned_cols=280 Identities=12% Similarity=0.100 Sum_probs=178.5
Q ss_pred CCCEEEEEE----cCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC----CeEEEEECCC--Cc
Q 011179 135 DGSLFVAGF----QASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGS--GT 202 (491)
Q Consensus 135 dg~~la~~~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iw~~~~--~~ 202 (491)
...++++|+ .++.|.+|.++ ++........ +...+..++|+|++++|++++.+ +.|.+|++.. ++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 334566664 35689999764 4533222222 33467789999999999999875 7999998865 44
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE---ec-----------
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRI---LA----------- 267 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~----------- 267 (491)
...+..... +......+++ ++++|++++ .++.|.+|++.....+..+ ..
T Consensus 89 ~~~~~~~~~--------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 89 LHLLNTQKT--------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEEC--------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred EEEeeEecc--------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 322222111 1124666777 888777776 5789999999754332111 11
Q ss_pred cCCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccC----C-Cce----eeEeccccCcEEEEEEcCCCCEEEEee-C
Q 011179 268 HTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNV----K-GKP----AGVLMGHLEGITFIDSRGDGRYLISNG-K 336 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~----~-~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~-~ 336 (491)
+...+.+++|+ +++++++++ ..++.|.+|++..... . ... ......+......++|+|+|+++++++ .
T Consensus 153 ~~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 153 TMPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp SSCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 12345789997 778765554 4588999999863211 0 000 112223445678999999999887777 6
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
++.|.+||+.+... ..+..+....... .....++|+|||++|+++
T Consensus 232 ~~~v~v~~~~~g~~--------------------------------~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 232 GGTVIAFRYADGML--------------------------------DEIQTVAADTVNA---QGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp TCEEEEEEEETTEE--------------------------------EEEEEEESCSSCC---CCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEecCCce--------------------------------EEeEEEecCCCCC---CCcccEEECCCCCEEEEE
Confidence 89999999875211 1111111111000 001244688899999777
Q ss_pred ecC--CeEEEEECC--CCc--EEEeeccCCCCeeeeEecCCCCeEEEEe-CCCcEEEEcCC
Q 011179 417 SHD--SCVYVYDLV--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFP 470 (491)
Q Consensus 417 ~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~~ 470 (491)
..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|++.
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 665 899999985 454 4445544 56788999999999888887 67899997665
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8.1e-21 Score=177.52 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=181.1
Q ss_pred eEEEEEECCCCCeEEEEEC-------CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 171 TVTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
.+..++|+|+++++++++. ++.|.+||..+++......... .+..++|+|++++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-----------------KPFGATINNTTQTLW 104 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-----------------CCCSEEEETTTTEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-----------------CcceEEECCCCCEEE
Confidence 5788999999998888774 5689999999887655443211 356789999999665
Q ss_pred EE-eCCCeEEEEECCCCeeeEEEeccCCC---------eeEEEEecCCCCEEEEEe--CCCeEEEEecccccCCCceeeE
Q 011179 244 AG-SSDDCIYVYDLEANKLSLRILAHTSD---------VNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 244 ~~-~~dg~i~vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 311 (491)
++ ..++.|.+||..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||.. ..+.+..
T Consensus 105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~ 179 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTA 179 (353)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEE
T ss_pred EEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEE
Confidence 55 55799999999999988877654432 6889998 6777666665 47899999997 6667766
Q ss_pred eccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC
Q 011179 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 312 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
+..+...+..++|+|+++++++++.++.|.+||+.+. ..+..+...
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----------------------------------~~~~~~~~~ 225 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN----------------------------------KILSRKKLL 225 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT----------------------------------EEEEEEECC
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC----------------------------------eEEEEEEcC
Confidence 6655566888999999999999999999999999873 223333221
Q ss_pred ceeEeeEEEEecccccCCCcEEEEEec-CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEe-CCCcEEEEcC
Q 011179 392 SVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 469 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~-~Dg~v~iw~~ 469 (491)
... .......++++|+++++++++. ++.|.+||+.+++.+..+.... ...++|+|++++++.++ .++.|.+||+
T Consensus 226 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 226 DDG--KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CSS--SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCC--CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 100 0011123367779998777765 4899999999999888877443 36799999999655554 7899999998
Q ss_pred CCCC
Q 011179 470 PGNG 473 (491)
Q Consensus 470 ~~~~ 473 (491)
..++
T Consensus 302 ~~~~ 305 (353)
T 3vgz_A 302 KSYK 305 (353)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7654
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.4e-19 Score=169.75 Aligned_cols=281 Identities=12% Similarity=0.133 Sum_probs=179.0
Q ss_pred CCCceEEEEEcCCCCEEEEEEcC----CeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEE
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw 196 (491)
+......++|+|||++|++++.+ +.|.+|+++.. ..+..+.....+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999998875 79999998762 233333222223335777888 888888776 57899999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee------e-------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKL------S------- 262 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~------~------- 262 (491)
++................+. .......+...+.+++|+|+|++|++++ .++.|.+|++..... +
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99754332211110001110 0001112333578899999999776655 478999998875431 1
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEe-CCCeEEEEecccccCCCce--eeEe---ccccCcEEEEEEcCCCCEEEEeeC
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVL---MGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
.....+...+..++|+ ++++++++++ .++.|.+||+. .+.. +..+ ..+......++|+|+|++|+++..
T Consensus 204 ~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 1122445667899997 7888777766 68999999987 3322 2222 233345789999999999877665
Q ss_pred C--CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE
Q 011179 337 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 337 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+ +.|.+|++...... ...+..+.... ....++|+|+|++|+
T Consensus 279 ~~~~~i~v~~~~~~~g~------------------------------~~~~~~~~~g~-------~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 279 LKADGVAIFKVDETNGT------------------------------LTKVGYQLTGI-------HPRNFIITPNGKYLL 321 (361)
T ss_dssp SSSCEEEEEEECTTTCC------------------------------EEEEEEEECSS-------CCCEEEECTTSCEEE
T ss_pred CCCCEEEEEEEcCCCCc------------------------------EEEeeEecCCC-------CCceEEECCCCCEEE
Confidence 4 88999998631100 01122222100 112336788999998
Q ss_pred EEe-cCCeEEEE--ECCCCcEEEee-ccCCCCeeeeEec
Q 011179 415 TGS-HDSCVYVY--DLVSGEQVAAL-KYHTSPVRDCSWH 449 (491)
Q Consensus 415 ~~~-~dg~i~iw--d~~~~~~~~~~-~~h~~~v~~~~~s 449 (491)
+++ .++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 888 57899996 55577765443 2345578888885
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.6e-20 Score=175.14 Aligned_cols=267 Identities=13% Similarity=0.143 Sum_probs=169.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEEc---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEE
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 197 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~ 197 (491)
.+......++|+|||+ |++++. ++.|++|++.++.. ..+.....+...+..++|+|++++|++++ .++.|.+|+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3456677899999999 555544 68999999987642 22222122334678899999999999888 678999999
Q ss_pred CC-CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeE--EEec-cCCCe
Q 011179 198 VG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSL--RILA-HTSDV 272 (491)
Q Consensus 198 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~--~~~~-h~~~v 272 (491)
+. ++.............+ + ....+...+.+++|+|+|+.+++...++.|++||+. +++... .+.. ....+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~----p-~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHG----P-RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp ECTTSCEEEEEEEECCCCC----S-STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred eCCCCCeeecceeecCCCC----C-CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 95 3333222211110000 0 011123358899999999966666678899999998 454322 2222 23367
Q ss_pred eEEEEecCCCCEEEE-EeCCCeEEEEecccccCCCceeeEecccc------CcEEEEEEcCCCCEE-EEeeCCCcEEEEe
Q 011179 273 NTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYL-ISNGKDQAIKLWD 344 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l-~s~~~dg~i~iwd 344 (491)
..++|+ ++++++++ ...++.|.+|++.........+..+.... ..+..++|+|+|++| ++...++.|.+|+
T Consensus 190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 190 RHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred ceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 889998 77885554 56789999999862111111222222222 348889999999987 4556689999999
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-CeEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~ 423 (491)
+..... ...+..+..+.. ....++|+|||++|++++.+ +.|.
T Consensus 269 ~~~~g~-------------------------------~~~~~~~~~~~~------~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 269 VTADGH-------------------------------LTLIQQISTEGD------FPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp ECGGGC-------------------------------EEEEEEEECSSS------CCCEEEECTTSSEEEEEETTTTEEE
T ss_pred ECCCCc-------------------------------EEEeEEEecCCC------CcCeEEECCCCCEEEEEEcCCCcEE
Confidence 863110 012222222111 11234678899999888765 8999
Q ss_pred EE--ECCCCcEE
Q 011179 424 VY--DLVSGEQV 433 (491)
Q Consensus 424 iw--d~~~~~~~ 433 (491)
+| |..+++..
T Consensus 312 v~~~d~~tg~l~ 323 (347)
T 3hfq_A 312 LYARDLTSGKLS 323 (347)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEeCCCCeEE
Confidence 99 55566654
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=1.9e-20 Score=175.76 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=180.6
Q ss_pred EEEEEEcC--CeEEEEEC--CCCeEEEEEee-cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC-CCcccccccccc
Q 011179 138 LFVAGFQA--SQIRIYDV--ERGWKIQKDIL-AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTE 211 (491)
Q Consensus 138 ~la~~~~d--g~i~iwd~--~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~ 211 (491)
+|++|+.. +.|.+|++ .++.. ..... .......+..++|+|++++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l-~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC-KLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE-EEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE-EEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 35566543 56887765 45532 22211 11222357789999999999998887 99999997 665432211110
Q ss_pred ccccccccccCCCCceecEEEEEEcCCCCE--EEEEe-------------CCCeEEEEECC-CCeeeEEEe----ccCCC
Q 011179 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-------------SDDCIYVYDLE-ANKLSLRIL----AHTSD 271 (491)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~----~h~~~ 271 (491)
. + .+.+++|+|||++ ++++. .++.+.+|++. .++....+. .+...
T Consensus 82 --~----------g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~ 146 (365)
T 1jof_A 82 --G----------G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG 146 (365)
T ss_dssp --C----------S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC
T ss_pred --C----------C---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc
Confidence 0 0 1334789999994 44553 68999999997 455544333 24567
Q ss_pred eeEEEEecCCCCEEEEEeC-CCeEEEEecc-cccCCCceeeEec--cccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 011179 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRR-CLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIR 346 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 346 (491)
+.+++|+ +++++|+++.. ++.|++||+. .. ....+..+. .|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 147 ~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 147 IHGMVFD-PTETYLYSADLTANKLWTHRKLASG--EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEEEC-TTSSEEEEEETTTTEEEEEEECTTS--CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCC--CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 9999998 78888877654 6899999986 11 111222232 23567899999999999887775 6889999875
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc----eeEe---eEEEEeccc-ccCCCcEEEEEec
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----VLRT---LIRCHFSPV-YSTGQKYIYTGSH 418 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~-~s~~~~~l~~~~~ 418 (491)
....... .....+.... .... .......++ ++|||++|++++.
T Consensus 224 ~~~g~~~-----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 224 PATHMPV-----------------------------YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp TTTCCEE-----------------------------EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCcEE-----------------------------EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 3110000 0000111000 0000 000123346 7889999887765
Q ss_pred CC------eEEEEECC-CCcEEE---eeccCCCCeeeeEecC---CCCeEEEEeCC-CcEEEEcCCCC
Q 011179 419 DS------CVYVYDLV-SGEQVA---ALKYHTSPVRDCSWHP---SQPMLVSSSWD-GDVVRWEFPGN 472 (491)
Q Consensus 419 dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~sp---~~~~l~s~~~D-g~v~iw~~~~~ 472 (491)
+. .|.+|++. +++... .+..+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 666543 2334556678999999 89999998764 89999998764
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1e-20 Score=175.54 Aligned_cols=247 Identities=14% Similarity=0.055 Sum_probs=176.1
Q ss_pred ceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEECCCCCeEEEEE------------CC
Q 011179 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS 190 (491)
Q Consensus 126 ~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~------------~d 190 (491)
.+..++|+|+|++++ ++..++.|.+||+.+++.+........ +...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 477899999998765 455678999999999876655433210 122466799999999998886 57
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 270 (491)
+.|.+||+.+++........ ..+.+++|+|++++|+++ ++.|++||+.+++....+..+..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred ceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 99999999887654332211 146678999999988888 67899999999988777754431
Q ss_pred CeeEEEEecCCCCEEEEEe-CCC-----------------------eEEEEecccccCCCce-eeEeccccCcEEEEEEc
Q 011179 271 DVNTVCFGDESGHLIYSGS-DDN-----------------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSR 325 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~-~dg-----------------------~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 325 (491)
...+.|+ +++..++..+ .++ .|.+||+. .++. ...+..+...+.+++|+
T Consensus 176 -~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 176 -EAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp -TTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEEC
T ss_pred -CCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEEC
Confidence 1123666 5565444433 223 46899987 3333 23344566678899999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccc
Q 011179 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|++++++++ ++.|.+||+.+. +.+..+..... ...++
T Consensus 250 ~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~-------~~~~~ 286 (337)
T 1pby_B 250 PAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPHS-------YYSVN 286 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC-------CCEEE
T ss_pred CCCCEEEEe--CCeEEEEECCCC----------------------------------cCcceecCCCc-------eeeEE
Confidence 999999888 789999999763 23333332211 12346
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC
Q 011179 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 406 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
|+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 77899999999999999999999999988886543
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=2.6e-21 Score=193.62 Aligned_cols=233 Identities=11% Similarity=0.070 Sum_probs=167.8
Q ss_pred ceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 011179 169 RWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 169 ~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~ 247 (491)
..+|.+++|+|||++||+++. ||+++||++.+++...+.. .+...+..++|+|| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------EPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------SCCSEECEECTTCS-EEEEEEEC
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------ccccccccccCCCC-eEEEEecc
Confidence 347999999999999999887 9999999987666543322 11236889999999 77777664
Q ss_pred ---CCeEEEEECCC---CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEE
Q 011179 248 ---DDCIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 248 ---dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+....+|.+.. +.. ..+.. ...+...+|+|.....+++.+.++.+.+||+. .++... +..+.. .+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~-~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~----~g~~~~-l~~~~~--~~ 154 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEE-QRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD----GGGLRE-LARLPG--FG 154 (582)
T ss_dssp STTSCCEEEEEEETTSTTCC-EECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE----TTEEEE-EEEESS--CE
T ss_pred CCCCcceEEEEEeccCCCcc-ccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc----CCcEEE-eecCCC--ce
Confidence 44445544322 222 23332 23345668874444444555555555699986 444333 333333 78
Q ss_pred EEEcCCCCEEEEeeCC----CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee
Q 011179 322 IDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
++|+|||++|++++.+ +.|++||+.+.. ...+..+..
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~~---- 195 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGEG---- 195 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSSC----
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCCC----
Confidence 9999999999988777 789999988732 234444432
Q ss_pred EEEEecccccCCCcEEEEEecCC--eEEEEECCCCcEEEeeccCCCCeeeeE--------ecCCCCeEEEEeCCCcEEEE
Q 011179 398 IRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCS--------WHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~--------~sp~~~~l~s~~~Dg~v~iw 467 (491)
....++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|
T Consensus 196 --~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 196 --SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF 272 (582)
T ss_dssp --EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred --ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence 125568899999999888888 8999999999888 7788888888888 99999999999999999999
Q ss_pred cC
Q 011179 468 EF 469 (491)
Q Consensus 468 ~~ 469 (491)
++
T Consensus 273 ~~ 274 (582)
T 3o4h_A 273 ID 274 (582)
T ss_dssp ET
T ss_pred EE
Confidence 99
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=8.5e-21 Score=181.58 Aligned_cols=185 Identities=11% Similarity=0.047 Sum_probs=134.3
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCC
Q 011179 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (491)
Q Consensus 146 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (491)
+.+++|+.... .....++.+++++++.++++++.++ +++|+...-...... .........+.......
T Consensus 23 ~~vri~~~~~~----------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSPEE----------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP-GDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCCSS----------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT-TCCTTCEEECCCCEEEC
T ss_pred eeEEecCCccc----------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc-ccCcccccccCcccccc
Confidence 46888765321 1112478899999999999999887 888875321100000 00000000000000112
Q ss_pred ceecEEEEEEcCCCCEEE----EEeCCCeEEEEECCCC--------ee---eEEEeccCCCeeEEEEecCCCCEEEEEeC
Q 011179 226 YSFGIFSLKFSTDGRELV----AGSSDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 226 h~~~i~~~~~s~~~~~l~----~~~~dg~i~vwd~~~~--------~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
+...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|.++++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 445799999999999999 7888999999998654 22 34455799999999998555899999999
Q ss_pred CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 291 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
||+|++||++ ....+....+|...|++++|+|+|++|++|+.||.|++||++
T Consensus 171 Dg~v~iwD~~----~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 171 DGSIAVLQVT----ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TSCEEEEEES----SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCeEEEEEcC----CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 9999999998 555555667789999999999999999999999999999997
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=197.92 Aligned_cols=289 Identities=11% Similarity=0.015 Sum_probs=184.8
Q ss_pred ceEEEEEcCCCCEEEEEEc---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 126 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
.|.+++|||||++||+++. ++.|++||+.+++.+..... ...+..++|||||+.|+++. ++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEE-CCeEEEE
Confidence 3899999999999998876 68999999999854210111 13578899999999999986 7899999
Q ss_pred ECCCCccccccccccccccccccccCCCCcee---------cEEEEEEcCCCCEEEEEeCCC------------------
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGRELVAGSSDD------------------ 249 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~s~~~~~l~~~~~dg------------------ 249 (491)
++.+++...+..... ....+ .||.. ...+++|+|||++|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~--~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 136 QRPGDPPFQITFNGR--ENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp SSTTSCCEECCCCCB--TTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred eCCCCCcEEEecCCC--cCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 998887643321110 00000 01111 124799999999999987652
Q ss_pred ----------------eEEEEECCCCeee--EE------EeccCCCeeEEEEecCCCCEEEEEeCC----CeEEEEe---
Q 011179 250 ----------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWD--- 298 (491)
Q Consensus 250 ----------------~i~vwd~~~~~~~--~~------~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd--- 298 (491)
.|++||+.+++.. .. +..|...+..++|+ |+++++++.... ..|.+||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999988752 12 23577789999998 567777774432 2488888
Q ss_pred -cccccCCCceeeEe----ccccCcEE-----EEEEcCCCCEEEE--eeCCC--cEEEEeCCCCCCcccccCCCccceee
Q 011179 299 -RRCLNVKGKPAGVL----MGHLEGIT-----FIDSRGDGRYLIS--NGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 299 -~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+. .++....+ .+|...+. .+.|+|||+.|+. ...+| .|.+||+.+..
T Consensus 288 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------- 348 (719)
T 1z68_A 288 DWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------- 348 (719)
T ss_dssp SSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------
T ss_pred CCC----CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------
Confidence 65 33333333 35666665 7899999996654 44555 46667765522
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-----CCeEEEEECCC--Cc-EEEee
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVS--GE-QVAAL 436 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~--~~-~~~~~ 436 (491)
...+..+... +.. +.++ +++.|+..+. ++.+++|.+.. +. ....+
T Consensus 349 --------------------~~~lt~~~~~--v~~----~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 349 --------------------AIQITSGKWE--AIN----IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp --------------------CEECSCSSSC--EEE----EEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred --------------------eEecccCceE--EEE----EEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence 1122211111 111 1222 4555555554 37788887653 42 12333
Q ss_pred c----cCCCCeeeeEecCCCCeEEEE-eCC--CcEEEEcCCCCC
Q 011179 437 K----YHTSPVRDCSWHPSQPMLVSS-SWD--GDVVRWEFPGNG 473 (491)
Q Consensus 437 ~----~h~~~v~~~~~sp~~~~l~s~-~~D--g~v~iw~~~~~~ 473 (491)
. +|...+..+.|+|++++|+.. +.+ ..+.+|++..++
T Consensus 402 ~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 402 TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 3 266678899999999977643 333 468899886654
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=1.5e-20 Score=178.66 Aligned_cols=291 Identities=12% Similarity=0.042 Sum_probs=183.2
Q ss_pred ceEEEEEcCCCCEEEEEEcC---CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 126 RAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.+..++|||||++|+..... ..|.+||+.+++.. .+ ..........+.|+|||++|++++.++.|++|++.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l--~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QL--TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-EC--CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-Ee--ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 36778999999998877543 47899999887432 22 12222122237899999999999999999999998887
Q ss_pred ccccccccccc--cc--ccccccCCCCceecEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCeeeEEEeccCCCee
Q 011179 203 MESLANVTEIH--DG--LDFSAADDGGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 203 ~~~~~~~~~~~--~~--~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
...+....... .+ +.+.... ..-......+.|+|+++.++.. ..+..|++||+.+++..... .+...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~ 191 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCT-KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLG 191 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEE
T ss_pred cEEEEecccccCCCCCEEEeccCC-ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccc
Confidence 54433321100 00 0000000 0000000013578888877654 35678999999988765433 6777899
Q ss_pred EEEEecCCCCEEEEEeCC------CeEEEEecccccCCCceeeEeccc--cCcEEEEEEcCCCCEEEEeeCC-----CcE
Q 011179 274 TVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKD-----QAI 340 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d-----g~i 340 (491)
.+.|+|.++..|+..+.+ ..|.+||+. .. ....+..+ ...+..+.|+|+|+.|+..+.+ +.|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GS-NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SC-CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECC----CC-ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 999984267766666543 357888874 22 22333333 2357889999999988776544 449
Q ss_pred EEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC-CCcEEEEEe--
Q 011179 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGS-- 417 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~-- 417 (491)
++||+.+.. . ..+..... .. +.|+| +|+++++++
T Consensus 267 ~~~d~~~g~----------------------------------~-~~l~~~~~----~~----~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 267 YKANPETLE----------------------------------N-EEVMVMPP----CS----HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp EEECTTTCC----------------------------------E-EEEEECCS----EE----EEEECSSSSEEEEEECC
T ss_pred EEEECCCCC----------------------------------e-EEeeeCCC----CC----CCccCCCCceEEEecCC
Confidence 999987632 1 11111110 00 46778 999888754
Q ss_pred --------------cCCeEEEEECCCCcEEEeeccCCC-----------CeeeeEecCCCCeEEEEeC-CCcEEEEcCC
Q 011179 418 --------------HDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSSW-DGDVVRWEFP 470 (491)
Q Consensus 418 --------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~l~s~~~-Dg~v~iw~~~ 470 (491)
.++.|++||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...+|.+.
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887653 3444444 2677899999998877664 5666666554
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=5.1e-20 Score=189.17 Aligned_cols=279 Identities=10% Similarity=0.058 Sum_probs=184.0
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce--eEEEEEECCCCCeEEEEECC---------CeE
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVYASMS---------PIV 193 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d---------~~i 193 (491)
.....++|+|||++|+++ |+.|++||+.+++....+........ ....+.|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 99999999999865433211111111 22458899999999998875 567
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCe
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV 272 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v 272 (491)
.+||+.+++...+.. |...+...+|||||+.||.+. ++.|++||+.+++..+.. .++...+
T Consensus 95 ~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 95 DIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred EEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccce
Confidence 799999987654322 233688999999999999884 689999999887754321 1222222
Q ss_pred -----------------eEEEEecCCCCEEEEEeCCC-eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe
Q 011179 273 -----------------NTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 273 -----------------~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
..+.|+ |+++.|+.++.|. .+.+|++....... .+...+..+.+.+.|..
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~---- 224 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV---- 224 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC----
T ss_pred ecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc----
Confidence 358998 8899888877654 48888875221110 34455667777776643
Q ss_pred eCCCcEEEEeCCC---CCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC------CceeEeeEEEEeccc
Q 011179 335 GKDQAIKLWDIRK---MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG------HSVLRTLIRCHFSPV 405 (491)
Q Consensus 335 ~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 405 (491)
.....|++||+.+ .... ....+.. +. .....+.
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~--------------------------------~~~~l~~~~~~~~~~------~~~~~~~ 266 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNA--------------------------------TSIQITAPASMLIGD------HYLCDVT 266 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCC--------------------------------CEEEECCCHHHHTSC------EEEEEEE
T ss_pred CCeeEEEEEECCCCCCCCcc--------------------------------eEEEecCCccCCCCC------eEEEEEE
Confidence 1223689999986 4210 1111111 22 2234457
Q ss_pred ccCCCcEEEEEec----CCeEEEEECCCCc----EEE--ee--ccCCCCee-----eeEecCCCCeEE-EEe-CCC--cE
Q 011179 406 YSTGQKYIYTGSH----DSCVYVYDLVSGE----QVA--AL--KYHTSPVR-----DCSWHPSQPMLV-SSS-WDG--DV 464 (491)
Q Consensus 406 ~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~~--~~--~~h~~~v~-----~~~~sp~~~~l~-s~~-~Dg--~v 464 (491)
|||||+.++.... +..|++||+.+++ +.. .+ ..|...|. .++|+|||+.|+ ..+ .+| .|
T Consensus 267 wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 267 WATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred EeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 7889997766543 3379999999987 221 22 34665555 789999999776 555 344 57
Q ss_pred EEEcCCCCC
Q 011179 465 VRWEFPGNG 473 (491)
Q Consensus 465 ~iw~~~~~~ 473 (491)
++|++.++.
T Consensus 347 ~~~~~~~~~ 355 (740)
T 4a5s_A 347 CYFQIDKKD 355 (740)
T ss_dssp EEEETTCSS
T ss_pred EEEECCCCc
Confidence 778877654
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=9.4e-19 Score=163.42 Aligned_cols=282 Identities=12% Similarity=0.019 Sum_probs=186.9
Q ss_pred CCCEEEEEE------cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC----------CCeEEEEEC
Q 011179 135 DGSLFVAGF------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDV 198 (491)
Q Consensus 135 dg~~la~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----------d~~i~iw~~ 198 (491)
+++++.+.. .|+.|.+||..+++.+..+.. +..+ .++|+||+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 377999999999876654332 2333 8999999999998863 568999999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCeeEE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDVNTV 275 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~h~~~v~~~ 275 (491)
.+.+............ .+......++|+|||++|+++.. ++.|.+||+.+++.+.. +. ... ...+
T Consensus 89 ~t~~~~~~i~~~~~~~----------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v 156 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRV----------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSV 156 (361)
T ss_dssp TTCCEEEEEEECTTBC----------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEE
T ss_pred cCCcEEEEEEcCcccc----------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-ccee
Confidence 8877654433221000 01113456899999999998874 57899999999988776 43 322 2334
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceee------EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG------VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
.+.|.....+++.+.||.+.+|+... .++... .+..+..++ .+.+++++..++..+.++.+.++|+....
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 55555557888999999999999852 122221 111222222 33346677777777888999999986532
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce----eEeeEEEEecccccCCCcEEEEEec-------
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSH------- 418 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~------- 418 (491)
.. .+..+..... ...........+++|+++.++++..
T Consensus 233 ~~--------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 233 VK--------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CE--------------------------------EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ce--------------------------------ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 10 1111110000 0000000011256778888877654
Q ss_pred ----CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 419 ----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 419 ----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +.|.+||..++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3489999999999999998776 999999999999998887 99999999887
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.8e-18 Score=159.02 Aligned_cols=240 Identities=11% Similarity=0.093 Sum_probs=162.3
Q ss_pred ceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeecCCC---ceeEEEEEECCCCCeEEEEECC-----------
Q 011179 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMS----------- 190 (491)
Q Consensus 126 ~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d----------- 190 (491)
.+..++|+|||++++ ++..++.|.+||+.+++........... ...+..++|+|++++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 577899999998765 4456899999999998666554322110 2236789999999999998865
Q ss_pred -CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 191 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 191 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
+.|.+||+.+++......... +...+.+++|+|+|+ +++++. .|++||+.+++.+..+..+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~ 186 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN 186 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred CCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence 899999998765433222111 111577899999999 666544 39999999998877665332
Q ss_pred C------------------------CeeEEEEecCCCC-----------EEEEEeCCCeEEEEecccccCCCceeeEecc
Q 011179 270 S------------------------DVNTVCFGDESGH-----------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (491)
Q Consensus 270 ~------------------------~v~~~~~~~~~~~-----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 314 (491)
. ....++++ +++. ++.....++.+++|++. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 252 (349)
T 1jmx_B 187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------------D 252 (349)
T ss_dssp CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEE-------------E
T ss_pred cCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEEecccc-------------c
Confidence 0 22334554 2211 11122233444444432 2
Q ss_pred ccCcEEEEEEcC-CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 315 HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 315 ~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+...+..++++| ++++++++ ++.|.+||+.+. +.+..+.....
T Consensus 253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~ 296 (349)
T 1jmx_B 253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----------------------------------KLIKAANLDHT 296 (349)
T ss_dssp CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC
T ss_pred CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----------------------------------eEEEEEcCCCC
Confidence 455788999999 99999888 889999999873 33333332211
Q ss_pred eEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC
Q 011179 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 439 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 439 (491)
...++++|++++|++++.++.|++||+.+++.+..+...
T Consensus 297 -------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -------CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -------ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 123467789999998888999999999999998887644
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1.1e-17 Score=157.03 Aligned_cols=249 Identities=10% Similarity=0.065 Sum_probs=163.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEECCCCCe--EEEEE-------------
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS------------- 188 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~------------- 188 (491)
..+..++|+|||++|++++.+ .|.+|++. +++........ .. +.+..++|+|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-cC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 467789999999999998888 99999997 77543322111 11 12446899999995 44442
Q ss_pred CCCeEEEEECC-CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeee--E
Q 011179 189 MSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--L 263 (491)
Q Consensus 189 ~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~-~~~~~--~ 263 (491)
.++.+.+|++. +++......... ..+...+.+++|+|||++|+++.. ++.|++||+. +++.. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYE------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEE------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEE------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 68999999997 354322211100 012236889999999998887764 6799999998 67643 2
Q ss_pred EEe--ccCCCeeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCCce------eeEec----cccC------cEEEEE-
Q 011179 264 RIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKP------AGVLM----GHLE------GITFID- 323 (491)
Q Consensus 264 ~~~--~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~------~~~~~----~~~~------~i~~~~- 323 (491)
.+. .|...+..++|+ ++++++++++. ++.|.+|++... .++. +..+. +|.. .+..++
T Consensus 185 ~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 232 245678999997 78888877764 789999987521 1222 11121 2222 588999
Q ss_pred EcCCCCEEEEeeCCC------cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEE---EEeCCcee
Q 011179 324 SRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA---TYKGHSVL 394 (491)
Q Consensus 324 ~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 394 (491)
|+|||++|+++..+. .|.+|++... +.... ....+.
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~---------------------------------g~~~~~~~~~~~~~-- 306 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDC---------------------------------GSIEKQLFLSPTPT-- 306 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTT---------------------------------SCEEEEEEEEECSS--
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCC---------------------------------CCEEEeeeeeecCC--
Confidence 999999988766432 7999998631 11111 011111
Q ss_pred EeeEEEEecccccC---CCcEEEEEecC-CeEEEEECCCC
Q 011179 395 RTLIRCHFSPVYST---GQKYIYTGSHD-SCVYVYDLVSG 430 (491)
Q Consensus 395 ~~~~~~~~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 430 (491)
......+++| ||++|++++.+ +.|.+|++...
T Consensus 307 ----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 ----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ----CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0112346778 89999999875 89999998765
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=8.8e-18 Score=155.08 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=176.3
Q ss_pred eeEEEEEECCCCCeEEEEECC------------------------CeEEEEECCCCccccccccccccccccccccCCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMS------------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (491)
+.+.+++++|+|+++++...+ +.|.+||..+++....... +
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~ 88 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------------N 88 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------------T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------------C
Confidence 369999999999988887766 4799999888776432210 1
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEE---------eccCCCeeEEEEecCCCCEEEEEe-CCCeE
Q 011179 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---------LAHTSDVNTVCFGDESGHLIYSGS-DDNLC 294 (491)
Q Consensus 226 h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i 294 (491)
+-..+..++++++|+++++...++.|++||..... .+..+ ..+......++++|.+++++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 22267899999999988888889999999986553 44444 234446899999743788888886 69999
Q ss_pred EEEecccccCCCceeeEecc----------ccCcEEEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 295 KVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++||. .+..+..+.. +......++++|+ +.++++...++.|++||..+.
T Consensus 169 ~~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--------------- 228 (329)
T 3fvz_A 169 VQFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--------------- 228 (329)
T ss_dssp EEECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------------
T ss_pred EEEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------------
Confidence 99995 4555555532 2334789999998 777777788899999999752
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC------CCcEEEEEecCCeEEEEECCCCcEEEeec
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 437 (491)
..+..+.......... ..+++| +|+..++...+..|++||..+++.+..+.
T Consensus 229 -------------------~~~~~~~~~~~~~~~~----~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 229 -------------------EFVREIKHASFGRNVF----AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp -------------------CEEEEECCTTTTTCEE----EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred -------------------cEEEEEeccccCCCcc----eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 3333332211111111 122333 34433344455689999999999998873
Q ss_pred ---cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 438 ---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 438 ---~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+...+.+++++|+|.++++...++.|++|++....
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 667789999999999888888899999999987643
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=2.3e-17 Score=153.69 Aligned_cols=259 Identities=12% Similarity=0.167 Sum_probs=175.0
Q ss_pred CceEEEEEcCCCCEEEEEE---------cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC---C-
Q 011179 125 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P- 191 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~- 191 (491)
..+...++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+|||++|++++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45677788 999888642 2568999999987532 22 357889999999999987754 3
Q ss_pred -eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------------------
Q 011179 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------- 248 (491)
Q Consensus 192 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d---------------------- 248 (491)
.|.+|++.+++...+.. +.. +..++|+|||+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 48888888776543322 112 7889999999999888642
Q ss_pred -----CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC-------eEEEEecccccCCCceeeEecccc
Q 011179 249 -----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 249 -----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
..|++||+.+++.+..+.. . .+..+.|+ +++ +++++..+. ...+|.+. .+. ...+..+
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~- 216 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK- 216 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-
T ss_pred ccCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-
Confidence 5799999998887455554 4 88999998 677 887776552 44666554 222 2334444
Q ss_pred CcEEEEEEcCCCCEEEEeeCC--------CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 317 EGITFIDSRGDGRYLISNGKD--------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
..+..+ +|+|+.|+.++.+ ..|.+|| +. ......
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~ 258 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGIL 258 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESS
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEecc
Confidence 455544 9999998877754 3577777 31 111111
Q ss_pred eCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE-EEE
Q 011179 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV-VRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v-~iw 467 (491)
..+.. .+.. .+.|+ ++ ++++++.++.++|| +.+++....+ .+...|.+++|+| .++++++.++.. .+|
T Consensus 259 ~~~~~--~~~~---~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 259 DEVDR--GVGQ---AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp TTCCS--EEEE---EEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred ccCCc--ccCC---ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 11111 1111 13567 77 88999999999999 8766654444 4577899999999 677777777664 777
Q ss_pred cCC
Q 011179 468 EFP 470 (491)
Q Consensus 468 ~~~ 470 (491)
.+.
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 665
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=6e-18 Score=157.95 Aligned_cols=260 Identities=15% Similarity=0.097 Sum_probs=178.2
Q ss_pred EEEEcCCCCEEEEEEc----------CCeEEEEECCCCeEEEEEeecCCC---ceeEEEEEECCCCCeEEEEEC--CCeE
Q 011179 129 VSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASM--SPIV 193 (491)
Q Consensus 129 ~~~~s~dg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~--d~~i 193 (491)
.++|+|||++|+++.. ++.|.+||..+.+.+..+.....+ ......++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999998863 678999999988777766543211 124567899999999998874 5799
Q ss_pred EEEECCCCccccc-cccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeeeEEE-----
Q 011179 194 HIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-NKLSLRI----- 265 (491)
Q Consensus 194 ~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~----- 265 (491)
.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.....
T Consensus 134 ~v~d~~~~~~~~~~i~~~------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEETTTTEEEEEEGGGT------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCcEEEEEecCC------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 9999998866433 2221 12235567765 6778888999999998865 5443221
Q ss_pred -eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec------ccc----CcEEEEEEcCCCCEEEEe
Q 011179 266 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM------GHL----EGITFIDSRGDGRYLISN 334 (491)
Q Consensus 266 -~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~----~~i~~~~~~~~~~~l~s~ 334 (491)
..+..++ .+.++ +++..++..+.++.|.++|+.... ......+. .+. .....++++|+++.++++
T Consensus 196 ~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 196 FSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGDE--VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp SCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSSS--CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred EcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCCC--ceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 1111221 22333 445666777789999999985211 11111110 011 111236899998887765
Q ss_pred eC-----------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEec
Q 011179 335 GK-----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 335 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
.. .+.|.+||+.+ .+.+.++..+. .+.
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~--------p~~ 309 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD--------ALS 309 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--------CCE
T ss_pred EccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--------eeE
Confidence 43 34799999987 35566665554 234
Q ss_pred ccccCCCcEEEEEecCCeEEEEECCCC--cEEEeeccCCCCeeeeEecCCCC
Q 011179 404 PVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 404 ~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp~~~ 453 (491)
++++|||++|++++. +.|.+||..++ +.+..+..+......++++|+|.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 467789999999887 99999999999 99999876777889999999986
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=2.4e-18 Score=174.93 Aligned_cols=299 Identities=12% Similarity=0.038 Sum_probs=190.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEE--EcCCeEEEEECCCCeEEEEEeecCCCceeEE---------EEEEC--CCCCe-
Q 011179 118 WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVT---------DTSLS--PDQRH- 183 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~---------~~~~s--p~~~~- 183 (491)
..+.+|...+..++|++++-+++.. +.++...||....+.....+ ..+...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---CCCCccccccccccCCccceeeeecCCCeE
Confidence 3566788999999999887666666 45888999986444333332 22223344 45454 99998
Q ss_pred EEEEEC-CCeEEEEECC--C-CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------C
Q 011179 184 LVYASM-SPIVHIVDVG--S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D 249 (491)
Q Consensus 184 l~~~~~-d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----------g 249 (491)
|+.++. +..|.++++. + +....+.... ...|...+.+++|+|||+.|++++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 777654 5567777765 3 4432222110 00144578899999999999998876 5
Q ss_pred eEEEEECCC------CeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCC--------CeEEEEecccccCCC---ceeeE
Q 011179 250 CIYVYDLEA------NKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKG---KPAGV 311 (491)
Q Consensus 250 ~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~---~~~~~ 311 (491)
.|++||+.+ ++. ..+. .+...+..++|+ ++++.|+.++.+ ..|++||+.. .+ .....
T Consensus 162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~---~g~~~~~~~l 236 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTE---DGRFADTRTL 236 (662)
T ss_dssp EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECC---CCcccccEEe
Confidence 899999988 544 4555 566778889998 889988877754 3799999861 12 33333
Q ss_pred eccccCcEEEEEEcCCCCEEEEeeCCC--cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe
Q 011179 312 LMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (491)
Q Consensus 312 ~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
..+|...+..+.|+|||++++++..++ .|.+||+.+..... ...
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------l~~ 282 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ----------------------------------LCR 282 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE----------------------------------SSC
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee----------------------------------ccc
Confidence 344568899999999999888888888 56666654422110 000
Q ss_pred CCceeE-eeEE-EEecccccCCCcEEEEEecCCeEEEE--ECCCCcEEEeeccCCCCeeee-EecCCCCeEEEEeCCCc-
Q 011179 390 GHSVLR-TLIR-CHFSPVYSTGQKYIYTGSHDSCVYVY--DLVSGEQVAALKYHTSPVRDC-SWHPSQPMLVSSSWDGD- 463 (491)
Q Consensus 390 ~~~~~~-~~~~-~~~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~~~Dg~- 463 (491)
.+.... .... -....+++|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+..
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence 000000 0000 0012246678999999998 988888 655555 67777787778777 55443334555565544
Q ss_pred -EEEEcCCCC
Q 011179 464 -VVRWEFPGN 472 (491)
Q Consensus 464 -v~iw~~~~~ 472 (491)
|.+|++.++
T Consensus 361 ~i~~~d~~~g 370 (662)
T 3azo_A 361 EVVELDTVTG 370 (662)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEECCCC
Confidence 555565444
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.1e-16 Score=144.70 Aligned_cols=246 Identities=12% Similarity=0.151 Sum_probs=173.1
Q ss_pred CceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE-cCCCCEEEEEe
Q 011179 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGS 246 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~~~~l~~~~ 246 (491)
+-..+.+++++++++++++...++.|.+|+.. ++......... ...++...+..+++ .++++.+++..
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------KRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----------SSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----------CCcccccCceEEEEEcCCCeEEEEcC
Confidence 33468899999999988888889999999987 33322211100 01123446889999 46776555553
Q ss_pred C-CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--cccCcEEEE
Q 011179 247 S-DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI 322 (491)
Q Consensus 247 ~-dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~ 322 (491)
. ++.|.+|| .+++.+..+. .+...+..+++. ++++++++...++.|.+||.. +..+..+. .+...+..+
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-----GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-----SCEEEEEECTTTCSSEEEE
T ss_pred CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-----CCEEEEeCCCCccCCcEEE
Confidence 3 88999999 5666666654 344578999997 778888888888999999963 44444443 344568999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEe
Q 011179 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+++|+|+++++...++.|++||... ..+..+........ ..
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~~~----p~ 210 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGITNY----PI 210 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTSCS----EE
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCccCC----Cc
Confidence 9999999888888889999999753 23333332211111 12
Q ss_pred cccccCCCcEEEEEecCC-eEEEEECCCCcEEEeeccCC--CCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 403 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 403 ~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.++++++|+++++...++ .|.+||. +++.+..+..+. ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 335677899888888776 9999995 577777765443 34779999999987777 67999999998654
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.6e-16 Score=143.67 Aligned_cols=246 Identities=14% Similarity=0.152 Sum_probs=171.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec---CCCceeEEEEEE-CCCCCeEEEEEC-CCeEEE
Q 011179 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI 195 (491)
Q Consensus 121 ~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~-sp~~~~l~~~~~-d~~i~i 195 (491)
.++-....+++++++|+++++...++.|.+||.. +..+...... ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3455678999999999988888889999999987 4444433221 123346889999 577776666543 789999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCee
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN 273 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~ 273 (491)
|+ .+++....... .+...+.+++++++|+.+++...++.|.+||.. ++.+..+. .+...+.
T Consensus 105 ~d-~~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 105 YN-QYGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EC-TTSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred EC-CCCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 99 44443322111 112257899999999987777788999999964 55555553 3445789
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc--cCcEEEEEEcCCCCEEEEeeCCC-cEEEEeCCCCCC
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSS 350 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~ 350 (491)
.+++. ++++++++...++.|++||.. +..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--- 238 (286)
T 1q7f_A 168 GVVVN-DKQEIFISDNRAHCVKVFNYE-----GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--- 238 (286)
T ss_dssp EEEEC-SSSEEEEEEGGGTEEEEEETT-----CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred EEEEC-CCCCEEEEECCCCEEEEEcCC-----CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---
Confidence 99997 778888888889999999974 4445555433 35788999999999888888776 999999643
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
..+..+..+..... ...++++|+|+++++ +.++.|++|++...
T Consensus 239 --------------------------------~~~~~~~~~~~~~~----~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 --------------------------------QLISALESKVKHAQ----CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --------------------------------CEEEEEEESSCCSC----EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred --------------------------------CEEEEEcccCCCCc----ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 33444433321111 123456778987776 67999999998654
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=3.1e-17 Score=151.85 Aligned_cols=285 Identities=9% Similarity=0.030 Sum_probs=186.6
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
..|.+++|++++..++..+.++.++.|. +.....+. .+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS---KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE---SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEe---ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4567788999988887777788899992 33333322 23335789999999997778888899999999887654
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEe--ccCCCeeEEEEe
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFG 278 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~ 278 (491)
..... +...+.+++++++|+++++...+ +.|.+||..++.....+. .+...+..+++.
T Consensus 80 ~~~~~----------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 80 RPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp EEEEC----------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred EEeeC----------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 32210 11268999999999977777666 689999998877643332 244578999997
Q ss_pred cCCCCEEEEEeC------CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEE-EeeCCCcEEEEeCCCCCC-
Q 011179 279 DESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSS- 350 (491)
Q Consensus 279 ~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~- 350 (491)
++++++++... .+.|..+|.. ..+ +..+..+...+..++|+|+++.|+ +...++.|.+||+.+...
T Consensus 144 -~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 144 -SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp -TTSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred -CCCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 67887776654 2456666653 222 223333445678999999998665 445678999999864110
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
..... ......+.++. ....++++++|+++++...++.|.+||. ++
T Consensus 218 ~~~~~--------------------------~~~~~~~~~~~-------~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g 263 (333)
T 2dg1_A 218 IQPFG--------------------------ATIPYYFTGHE-------GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG 263 (333)
T ss_dssp EEEEE--------------------------EEEEEECCSSS-------EEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred ccccc--------------------------ceEEEecCCCC-------CCCceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence 00000 00000111110 1122356778998888777899999998 57
Q ss_pred cEEEeeccCCC------CeeeeEecCCCCeEEEEeCCC------cEEEEcCCC
Q 011179 431 EQVAALKYHTS------PVRDCSWHPSQPMLVSSSWDG------DVVRWEFPG 471 (491)
Q Consensus 431 ~~~~~~~~h~~------~v~~~~~sp~~~~l~s~~~Dg------~v~iw~~~~ 471 (491)
+.+..+..+.. .+.+++|+||+..|+.++.++ .|...++..
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 264 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 77666654432 689999999987666555543 455445443
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=4.8e-17 Score=165.30 Aligned_cols=281 Identities=14% Similarity=0.088 Sum_probs=171.5
Q ss_pred EEEEc--CCCCE-EEEEEc-CCeEEEEECC--C-CeEEEEEeecC--CCceeEEEEEECCCCCeEEEEECC---------
Q 011179 129 VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAK--SLRWTVTDTSLSPDQRHLVYASMS--------- 190 (491)
Q Consensus 129 ~~~~s--~dg~~-la~~~~-dg~i~iwd~~--~-~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d--------- 190 (491)
...|+ |||++ |+.++. +..|.+|++. . +. ...+.... .+...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 45554 99998 776654 5667777776 2 42 22221111 155678999999999999998876
Q ss_pred -CeEEEEECCC------CccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEE
Q 011179 191 -PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYD 255 (491)
Q Consensus 191 -~~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d--------g~i~vwd 255 (491)
..|++|++.+ ++...+.. .+...+..++|+|||++|+.++.+ ..|++||
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d 223 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSD----------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTAR 223 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSC----------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEe----------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEE
Confidence 5899999987 44332220 011257778999999999988755 3799999
Q ss_pred CC-CC---eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC--eEEEEecccccCCCceeeEeccccCc--------EEE
Q 011179 256 LE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEG--------ITF 321 (491)
Q Consensus 256 ~~-~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------i~~ 321 (491)
+. ++ +.......|...+..+.|+ ++++++++++.++ .|.+||+. .++.......+... +..
T Consensus 224 ~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 224 VTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp ECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred ECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCce
Confidence 98 56 4433334457889999998 7778888888888 55555553 23322222222221 467
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
++|+|++++++++.. +.++||.+.... ..+..+..+..... ..
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~---------------------------------~~~~~l~~~~~~~~--~~- 341 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-GAAVLGILDPES---------------------------------GELVDAAGPWTEWA--AT- 341 (662)
T ss_dssp EEECTTSCEEEEEBS-SSCEEEEEETTT---------------------------------TEEEECCSSCCEEE--EE-
T ss_pred EeEeCCCEEEEEEEc-CccEEEEEECCC---------------------------------CcEEEecCCCCeEE--EE-
Confidence 889999999999988 999999443210 22333433321111 11
Q ss_pred ecccccCCCcEEEEEecCC--eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 402 FSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
++ ++.+.-++++++.+. .|+++|+.+++.......+...+....+.+.....+.+..+..|..|-+.
T Consensus 342 ~s--~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 342 LT--VSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp EE--EETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred Ee--cCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 11 122222333344443 57777887887655445555555555555554444444344466666543
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=3.6e-17 Score=168.01 Aligned_cols=286 Identities=13% Similarity=0.115 Sum_probs=176.7
Q ss_pred EEEEEcCCCCEEEEEEcC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 128 YVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
..++|||||++|+.++.+ +.+.+||+.+++.. ....+...+...+|||||+.||.+. ++.|++|++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~ 139 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIE 139 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEEC
Confidence 458899999999998876 56779999998432 2234455799999999999999985 689999999
Q ss_pred CCCccccccccccccccccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC--------------------
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD-------------------- 249 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~~~~l~~~~~dg-------------------- 249 (491)
.+++...+..... ....+ .++. .....+.|||||++||.++.|.
T Consensus 140 ~~~~~~~lt~~g~--~~~~~-----~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (740)
T 4a5s_A 140 PNLPSYRITWTGK--EDIIY-----NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (740)
T ss_dssp TTSCCEECCSCCB--TTTEE-----ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred CCCceEEEcCCCC--cccee-----cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCc
Confidence 8887544322110 00000 0111 1123589999999999875321
Q ss_pred ----------------eEEEEECCC---Ce--eeEEEe------ccCCCeeEEEEecCCCCEEEEEeC----CCeEEEEe
Q 011179 250 ----------------CIYVYDLEA---NK--LSLRIL------AHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWD 298 (491)
Q Consensus 250 ----------------~i~vwd~~~---~~--~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd 298 (491)
.|++||+.+ ++ ....+. +|...+..++|+ +++++++.... +..|.+||
T Consensus 213 ~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp EEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEE
T ss_pred ceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEE
Confidence 588999998 73 223343 277789999998 67776665432 34799999
Q ss_pred cccccCCCc----e--eeEe--ccccCcEE-----EEEEcCCCCEEE-EeeC-CC--cEEEEeCCCCCCcccccCCCccc
Q 011179 299 RRCLNVKGK----P--AGVL--MGHLEGIT-----FIDSRGDGRYLI-SNGK-DQ--AIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 299 ~~~~~~~~~----~--~~~~--~~~~~~i~-----~~~~~~~~~~l~-s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
+. .++ + +..+ ..|...|. .+.|+|||+.|+ ..+. +| .|.+||+......
T Consensus 292 ~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---------- 357 (740)
T 4a5s_A 292 YD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---------- 357 (740)
T ss_dssp EE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE----------
T ss_pred CC----CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE----------
Confidence 87 333 1 1222 33444443 678999999877 5553 33 5888888753211
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEE-EEec----C--CeEEEEECCCCcEEE
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSH----D--SCVYVYDLVSGEQVA 434 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~----d--g~i~iwd~~~~~~~~ 434 (491)
....+....... .. + |++.|+ ++.. . ..|+..++..+....
T Consensus 358 ------------------------~lT~g~~~v~~~----~~--~--d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~ 405 (740)
T 4a5s_A 358 ------------------------FITKGTWEVIGI----EA--L--TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVT 405 (740)
T ss_dssp ------------------------ESCCSSSCEEEE----EE--E--CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEE
T ss_pred ------------------------ecccCCEEEEEE----EE--E--eCCEEEEEEecCCCCCceeEEEEEECCCCCcce
Confidence 111111111111 11 2 344444 4443 1 356666665554433
Q ss_pred eecc----CCCCeeeeEecCCCCeEEEEeCC---CcEEEEcCCCC
Q 011179 435 ALKY----HTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 472 (491)
Q Consensus 435 ~~~~----h~~~v~~~~~sp~~~~l~s~~~D---g~v~iw~~~~~ 472 (491)
.+.. ....+..++|+|++++++..... ..+.+++...+
T Consensus 406 ~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 406 CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp ESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred eeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 4432 24568899999999976655433 35777776654
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=4.4e-17 Score=154.25 Aligned_cols=261 Identities=10% Similarity=0.009 Sum_probs=170.6
Q ss_pred EEECCCCeEEEEEeecCCCceeEEE-----EEECCCCCeEEEEEC-CC--eEEEEECCCCcccccccccccccccccccc
Q 011179 150 IYDVERGWKIQKDILAKSLRWTVTD-----TSLSPDQRHLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 150 iwd~~~~~~~~~~~~~~~~~~~v~~-----~~~sp~~~~l~~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
.++..++..+..+. .+...... .+|+|||++|++++. ++ .|.+||+.+++...+...
T Consensus 14 ~~~~~~g~~~~~lt---~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~------------ 78 (388)
T 3pe7_A 14 YQDASTGAQVTRLT---PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG------------ 78 (388)
T ss_dssp EECTTTCCEEEECS---CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS------------
T ss_pred EecCCCCcceEEec---CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC------------
Confidence 34666665554432 33333444 789999999999887 66 488899988876544321
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-cCCCCEEEEE------------
Q 011179 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSG------------ 288 (491)
Q Consensus 222 ~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~------------ 288 (491)
+...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+....|. .+++.+++..
T Consensus 79 ----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 79 ----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp ----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred ----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 11233356899999999999999999999999998776666666555444431 3778887643
Q ss_pred ----------eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCCCc
Q 011179 289 ----------SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSN 351 (491)
Q Consensus 289 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~ 351 (491)
..+..|.+||+. .++ ...+..+...+..+.|+| +|+.|+....+ ..|.++|+....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~----~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-- 227 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLK----TGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-- 227 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETT----TCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--
T ss_pred cchhhhhhccCCcceEEEEECC----CCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--
Confidence 244689999986 443 445556777899999999 99998877653 367777775421
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CC----eEEEEE
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYD 426 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~i~iwd 426 (491)
...+..+.... ....+.|||||+.|+..+. ++ .|++||
T Consensus 228 ---------------------------------~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 228 ---------------------------------MRKVKTHAEGE----SCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp ---------------------------------CEESCCCCTTE----EEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred ---------------------------------eEEeeeCCCCc----ccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence 11111111001 1234568889997765444 22 399999
Q ss_pred CCCCcEE--EeeccCCC---CeeeeEecCCCCeEEEE---------eCCCcEEEEcCCCCC
Q 011179 427 LVSGEQV--AALKYHTS---PVRDCSWHPSQPMLVSS---------SWDGDVVRWEFPGNG 473 (491)
Q Consensus 427 ~~~~~~~--~~~~~h~~---~v~~~~~sp~~~~l~s~---------~~Dg~v~iw~~~~~~ 473 (491)
+.+++.. ..+.++.. ....++|+|||+.|+.. ..+..|++||+.++.
T Consensus 271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 9998743 33332110 12335799999977754 456789999998753
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=2e-16 Score=161.79 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=186.0
Q ss_pred CCCCEEEEEEcC-----CeEEEEECCCCeEEEEEe----ecCCCceeEEEEEECCCCCeEEEEECCC-----eEEEEECC
Q 011179 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVG 199 (491)
Q Consensus 134 ~dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iw~~~ 199 (491)
|+|++++....+ +.|.+.+...+.. ..+. ...++...+..++|||||++|+.+..++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 788877755432 2344444444422 1111 1233445789999999999999876543 89999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeee-
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS- 262 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~----------------i~vwd~~~~~~~- 262 (491)
+++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 160 tg~~~~~~~-~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 160 GAKELPDVL-E----------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp TTEEEEEEE-E----------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred CCCCCcccc-c----------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence 987644211 0 013457899999999999887765 999999887632
Q ss_pred -EEEe--ccCCCeeEEEEecCCCCEEEEEeC-----CCeEEEEeccccc--CCCc-eeeEeccccCcEEEEEEcCCCCEE
Q 011179 263 -LRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKGK-PAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 263 -~~~~--~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~~~~~l 331 (491)
..+. .|...+..+.|+ +++++|+.++. +..|.+||+.... ..+. ....+..+...+.. .|+|+|+.|
T Consensus 223 ~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l 300 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVF 300 (710)
T ss_dssp EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEE
T ss_pred eEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEE
Confidence 2222 245567899998 78888877764 5689999986200 0021 34556666666655 488899888
Q ss_pred EEeeCC----CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 332 ISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 332 ~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
+..+.. +.|.+||+.+... .....+..+.....+.. +.++
T Consensus 301 ~~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~~~~----~~~~ 344 (710)
T 2xdw_A 301 TFKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDVLEW----VACV 344 (710)
T ss_dssp EEEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCEEEE----EEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCeEEE----EEEE
Confidence 766653 3599999876321 01122222221111111 2344
Q ss_pred CCCcEEEEEecCC--eEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEE-e---CCCcEEEEcCCCCC
Q 011179 408 TGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-S---WDGDVVRWEFPGNG 473 (491)
Q Consensus 408 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-~---~Dg~v~iw~~~~~~ 473 (491)
+++.++++...++ .|++||+.+|+.+..+..+.+.+..++++|+++.|+.. + ..+.|+.||+.+++
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5788888888888 46777887888888888788889999999999855533 2 34789999998765
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=8.2e-16 Score=141.85 Aligned_cols=255 Identities=11% Similarity=0.065 Sum_probs=174.1
Q ss_pred CCCceEEEEEcCCCCEEEEEEcC------------------------CeEEEEECCCCeEEEEEeecCCCceeEEEEEEC
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 178 (491)
--+.+.+++++|+|+++++...+ +.|.+||..+++.+... ...+-..+..++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEEC
Confidence 35789999999999999888777 47999999888655432 22333468899999
Q ss_pred CCCCeEEEEECCCeEEEEECCCCc-cccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEe-CCCeEEEEE
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYD 255 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~-~dg~i~vwd 255 (491)
|+++++++...++.|++|+..... ......... . .....++-..+..++++| ++.++++.+ .++.|++||
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-Q------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-B------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-C------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 999988888888999999986542 111110000 0 000112334688999999 788777776 689999999
Q ss_pred CCCCeeeEEEecc----------CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--cccCcEEEEE
Q 011179 256 LEANKLSLRILAH----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFID 323 (491)
Q Consensus 256 ~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~ 323 (491)
.+++.+..+... -.....+++.+..++++++...++.|++||.. .++.+..+. .+...+..++
T Consensus 173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEE
T ss_pred -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceee
Confidence 566666666422 23488999984348888888889999999986 466666663 4556788999
Q ss_pred EcC------CCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEee
Q 011179 324 SRG------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 324 ~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
++| +|+..++...+..|++||+.+. ..+..+..... .
T Consensus 248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----------------------------------~~~~~~~~~~~---~ 290 (329)
T 3fvz_A 248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----------------------------------EIIDVFKPVRK---H 290 (329)
T ss_dssp EETTEEEEEECCCCTTCSCCCCEEEEETTTC----------------------------------CEEEEECCSSS---C
T ss_pred ecCCEEEEeCCCEEeccCCCcEEEEEEcCCC----------------------------------eEEEEEcCCCC---c
Confidence 999 3333333334558999998763 33444321100 0
Q ss_pred EEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
......++++|+|.++++...++.|++|++.
T Consensus 291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred cCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 0112334677899888888889999999974
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=5.9e-15 Score=144.63 Aligned_cols=278 Identities=14% Similarity=0.030 Sum_probs=189.8
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC--CCcccccccccc
Q 011179 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE 211 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~ 211 (491)
|.+.++++...++.|.++|..+++.+..+.... .+..+.|+||++++++++.++.|.+||+. +++........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 445566777788999999999987776654322 46689999999999999999999999995 55443222110
Q ss_pred ccccccccccCCCCceecEEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cCC-CeeEE
Q 011179 212 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HTS-DVNTV 275 (491)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~i~~~~~s----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----------h~~-~v~~~ 275 (491)
.....++|+ |||+++++++. ++.|.++|..+.+.+..+.. |.. .+..+
T Consensus 240 ----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 240 ----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp ----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred ----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 146789999 69998888765 58999999999998877652 112 57788
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 354 (491)
..++....+++....+|.|.++|..... ...+..+ ........+.|+|+|++++++. .++.|.++|+.+.+
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----- 375 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----- 375 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----
Confidence 8875556667777778999999986211 1112222 2334567889999999987665 57889999998732
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeC-CceeEeeEEEEecccccCCCcEE-EEEe-cCCeEEEEECCC--
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYI-YTGS-HDSCVYVYDLVS-- 429 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~-- 429 (491)
.+..+.. ......-.... .+.|++..+ +++. .++.|.++|..+
T Consensus 376 -----------------------------l~~~i~vgg~~Phpg~g~~---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 376 -----------------------------LVAIEDTGGQTPHPGRGAN---FVHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp -----------------------------EEEEEECSSSSBCCTTCEE---EEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred -----------------------------EEEEEeccCcCCCCcccee---eECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 2222221 11000000000 134554444 4443 468999999988
Q ss_pred -----CcEEEeeccCCCCeeeeEecCCCCeEEEEeC-------CCcEEEEcCCCC
Q 011179 430 -----GEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-------DGDVVRWEFPGN 472 (491)
Q Consensus 430 -----~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~-------Dg~v~iw~~~~~ 472 (491)
.+.+.++......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6678888755444455789999998888663 358999999876
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=2.9e-16 Score=160.05 Aligned_cols=279 Identities=10% Similarity=0.020 Sum_probs=176.6
Q ss_pred CCCCEEEEEEcCC-----eEEEEECCCCeEEEEEee----cCCCceeEEEEEECCCCCeEEEEE-----CCCeEEEEECC
Q 011179 134 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVDVG 199 (491)
Q Consensus 134 ~dg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~-----~d~~i~iw~~~ 199 (491)
|+|++++....++ .|.+.+...+.. ..+.. ..+|...+..++|||||++||.+. .+..|++||+.
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 7888887665543 344445444422 22221 224556799999999999999543 34689999999
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCe----ee
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANK----LS 262 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~-------------i~vwd~~~~~----~~ 262 (491)
+++......+.. . ....++|+|||+.|+.++.+.. |++|++.++. ++
T Consensus 156 tg~~~~~~~~~~--------------~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 156 SGEWSKVDVIEG--------------G--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp TCCBCSSCCBSC--------------C--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred CCCCcCCcccCc--------------c--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 987641111110 0 1146899999999999988766 9999998876 22
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeCCC----eEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee---
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--- 335 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--- 335 (491)
.....|...+..+.|+ +++++|+.++.++ .|.+|+.. .+ ....+..+...+....+ ++|.+++...
T Consensus 220 ~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp ECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred EecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCC
Confidence 2223455678899998 7788777776555 56666543 22 34455556666666666 5566444443
Q ss_pred CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.++.|.+||+.+.... ....+..+.....+... .++ ++.++++
T Consensus 293 ~~~~l~~~d~~~~~~~--------------------------------~~~~l~~~~~~~~l~~~----~~~-~~~lv~~ 335 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARA--------------------------------SWKEIVPEDSSASLLSV----SIV-GGHLSLE 335 (695)
T ss_dssp TTCEEEEEBTTBCSGG--------------------------------GCEEEECCCSSCEEEEE----EEE-TTEEEEE
T ss_pred CCCEEEEEeCCCCCcc--------------------------------CCeEEecCCCCCeEEEE----EEE-CCEEEEE
Confidence 2578999998763210 01111111100111111 233 6788899
Q ss_pred EecCCeEEEEECC-CCcEEEeeccC-CCCeeeeEecCCCCeEEEE----eCCCcEEEEcCCCCC
Q 011179 416 GSHDSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG 473 (491)
Q Consensus 416 ~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~----~~Dg~v~iw~~~~~~ 473 (491)
...|+..+||.+. +++.+..+..+ .+.+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999988877654 46666666655 6778899999999866633 234789999997764
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=3.6e-14 Score=128.90 Aligned_cols=281 Identities=10% Similarity=0.070 Sum_probs=187.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCC
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 201 (491)
.+...+.+++++++|+++++...++.|.+||.. +. ...... ......+..+++++++.++++...++.|..|+.. +
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPL-PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecC-CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 345789999999999977776668899999988 53 222222 2223468999999999877776668899999876 3
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEecC
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~ 280 (491)
+.... ... .....+.++++.++++.+++...++.|.+||. +++.... ...+...+..+++. +
T Consensus 88 ~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~ 150 (299)
T 2z2n_A 88 IIKEY-TLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-S 150 (299)
T ss_dssp CEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-T
T ss_pred cEEEE-eCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-C
Confidence 32111 110 01125888999999987777777889999998 5544322 22345678999996 7
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceee-EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
+++++++...++.|..||.. +.... ....+...+..++++++|+++++...++.|.+||. +..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------- 214 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITES-----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------- 214 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----------
T ss_pred CCCEEEEeCCCCEEEEEcCC-----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----------
Confidence 78888777778899999972 22221 12334456889999999997777767888999998 421
Q ss_pred cceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe-ecc
Q 011179 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKY 438 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 438 (491)
+..+........ ...++++++|++.++...++.|.+||. +++.... +..
T Consensus 215 -------------------------~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 264 (299)
T 2z2n_A 215 -------------------------ITEFKIPTPNAR----PHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQI 264 (299)
T ss_dssp -------------------------EEEEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred -------------------------EEEEECCCCCCC----ceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCC
Confidence 111111100011 123355668886666667889999998 4543322 334
Q ss_pred CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 439 h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+...+.++++ +++.++++.. .+.|..++...
T Consensus 265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 5567999999 8888776655 56677776544
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=1.1e-15 Score=156.19 Aligned_cols=248 Identities=14% Similarity=0.131 Sum_probs=165.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe----
Q 011179 122 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---- 192 (491)
+|...+..++|||||++||.+..++ .|++||+.+++........ ..+..++|+|||+.|++++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555788999999999999776543 8999999999665432211 12567999999999999988765
Q ss_pred ------------EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEE
Q 011179 193 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD 255 (491)
Q Consensus 193 ------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd 255 (491)
|++|++.++.......... ..|...+..+.|+|||++|+.++. +..|++||
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 9999998776321111110 112235778999999999988765 67899999
Q ss_pred CCC------Ce-eeEEEeccCCCeeEEEEecCCCCEEEEEeCC----CeEEEEecccccCCCc--eeeEeccccC--cEE
Q 011179 256 LEA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGK--PAGVLMGHLE--GIT 320 (491)
Q Consensus 256 ~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~--~i~ 320 (491)
+.+ +. ....+..+...+.. .|+ ++++.|+..+.. +.|.+||+. .+. ....+..|.. .+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEE
Confidence 986 43 35566667666655 466 456666555543 369999986 322 2344555544 688
Q ss_pred EEEEcCCCCEEEEeeCCCc--EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 321 FIDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
.+.|++++.++++...++. |.+||+.++ ..+..+..+.. .+
T Consensus 340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~~--~v- 382 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEVG--SV- 382 (710)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCSS--EE-
T ss_pred EEEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCCc--eE-
Confidence 8999987888888888885 556666442 23333433321 11
Q ss_pred EEEecccccCCCcEEEEEe----cCCeEEEEECCCCc
Q 011179 399 RCHFSPVYSTGQKYIYTGS----HDSCVYVYDLVSGE 431 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 431 (491)
....++|+++.++... ..+.|++||+.+++
T Consensus 383 ---~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 ---VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2224566776665432 24789999998877
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=9e-15 Score=132.79 Aligned_cols=248 Identities=9% Similarity=0.070 Sum_probs=168.8
Q ss_pred ccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ..... .+...+.+++++|+++++++...++.|.+|
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 44555566778999999998 7788888999999999887 33322 233468999999999987777667899999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE----Ee-------------CCCeEEEEECCCC
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLEAN 259 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~----~~-------------~dg~i~vwd~~~~ 259 (491)
|..+++........... ....+.+++++|+|+++++ |+ ..+.|+.++.. +
T Consensus 96 d~~~g~~~~~~~~~~~~------------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 96 REPGGEWESIADSFEGK------------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp CSTTCCEEEEECEETTE------------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred cCCCCcEEEEeeccCCC------------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 99887754332211000 0114667999999998776 33 13467777765 4
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCce---eeEeccccCcEEEEEEcCCCCEEEEeeC
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
+ ...+..+......++|+ ++++.+++.+.++.|.+||+.. .+.. ...+..+...+..++++++|+++++.
T Consensus 163 ~-~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 163 T-LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp C-EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred C-EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence 4 34455666778999997 7888887778889999999851 1222 22223344556789999999876666
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
++.|.+||... ..+..+..+.. ...+.|. +|+++.|+++
T Consensus 236 ~~~v~~~~~~g-----------------------------------~~~~~~~~~~~---~~~~~f~---~~d~~~L~v~ 274 (296)
T 3e5z_A 236 GDGVHVLTPDG-----------------------------------DELGRVLTPQT---TSNLCFG---GPEGRTLYMT 274 (296)
T ss_dssp TTEEEEECTTS-----------------------------------CEEEEEECSSC---CCEEEEE---STTSCEEEEE
T ss_pred CCeEEEECCCC-----------------------------------CEEEEEECCCC---ceeEEEE---CCCCCEEEEE
Confidence 78899999763 44455544432 2222232 4688888888
Q ss_pred ecCCeEEEEECCCCcE
Q 011179 417 SHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~ 432 (491)
+.+ .+.-++..+.+.
T Consensus 275 t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 275 VST-EFWSIETNVRGL 289 (296)
T ss_dssp ETT-EEEEEECSCCBC
T ss_pred cCC-eEEEEEcccccc
Confidence 876 466677766554
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=1.3e-15 Score=155.36 Aligned_cols=250 Identities=12% Similarity=0.041 Sum_probs=162.8
Q ss_pred CCCCceEEEEEcCCCCEEEE-----EEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe----
Q 011179 122 QTTSRAYVSQFSADGSLFVA-----GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---- 192 (491)
+|...+..++|||||++||. |+.+..|++||+.+++.+.. ...... ....++|+|||+.|++++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 46667999999999999994 33456899999999854310 011111 1157899999999999998776
Q ss_pred ---------EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Q 011179 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN 259 (491)
Q Consensus 193 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~ 259 (491)
|++|++.++......... ...|...+.++.|+|||++|+.++.++ .|++||..++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHE------------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEEC------------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEe------------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 999999887642111110 012333678899999999998887666 7888877665
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEe---CCCeEEEEecccccCCCce--eeEeccc--cCcEEEEEEcCCCCEEE
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKP--AGVLMGH--LEGITFIDSRGDGRYLI 332 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~ 332 (491)
+. ..+..+...+....+. +++ +++... .++.|.+||+. .+.. ...+..+ ...+..++++ ++.+++
T Consensus 263 ~~-~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 263 DF-RLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp SC-EEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred ce-EEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 43 4555666667777773 544 555554 25789999986 2221 2333333 4457888888 677888
Q ss_pred EeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcE
Q 011179 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+...|+..+||.+... +.....+..+.. .....+.++|+++.
T Consensus 335 ~~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~~-----~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 335 EYLKDATSEVRVATLK---------------------------------GKPVRTVQLPGV-----GAASNLMGLEDLDD 376 (695)
T ss_dssp EEEETTEEEEEEEETT---------------------------------CCEEEECCCSSS-----SEECCCBSCTTCSE
T ss_pred EEEECCEEEEEEEeCC---------------------------------CCeeEEecCCCC-----eEEEEeecCCCCCE
Confidence 8889998888865421 122222222110 11233466778877
Q ss_pred EEEEe----cCCeEEEEECCCCcE
Q 011179 413 IYTGS----HDSCVYVYDLVSGEQ 432 (491)
Q Consensus 413 l~~~~----~dg~i~iwd~~~~~~ 432 (491)
++... ..+.|++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 66333 347899999988874
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=6.7e-14 Score=130.57 Aligned_cols=293 Identities=11% Similarity=-0.040 Sum_probs=184.1
Q ss_pred EEcCCCCEEEEEEc--CC---eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE----------CCCeEEE
Q 011179 131 QFSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI 195 (491)
Q Consensus 131 ~~s~dg~~la~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~i 195 (491)
...|+++++.+... .+ .|.+||..+++.+..+... . .. .++++||+++++++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g---~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---F-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC---C-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34477777666543 22 8899999998766543322 1 22 899999999999886 3678999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCe
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDV 272 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~h~~~v 272 (491)
||..+.+......+...... .+......++|+|||++|++++. ++.|.++| .+++.+.. +.. ..
T Consensus 102 iD~~t~~~~~~i~~~~~~~~---------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~-- 168 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRF---------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT-- 168 (373)
T ss_pred EECCCCcEEEEEECCCcccc---------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc--
Confidence 99987766544332200000 00013457899999999999874 47899999 99988776 532 22
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCcee--eEeccccCc-EEEEEEcCCCCEEEEeeCCCcEEEEeCCCCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLEG-ITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 349 (491)
++.+.+...+.+++.+.||.+.++|. ......... ..+ ....+ .....+.+++..++..+..+.+.+.|+....
T Consensus 169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~ 245 (373)
T 2mad_H 169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred -eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc
Confidence 24444455667778888999999998 322110000 001 11122 1234556666555555577889999986532
Q ss_pred CcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce----eEeeEEEEecccccCCCcEEEEEec-------
Q 011179 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSH------- 418 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~------- 418 (491)
.. .+..+..... ............++|+++.++++..
T Consensus 246 ~~--------------------------------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 246 AT--------------------------------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred ce--------------------------------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 11 0111110000 0000000011246778888887653
Q ss_pred ---CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEe-CCCcEEEEcCCCCCCCCC
Q 011179 419 ---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 419 ---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~-~Dg~v~iw~~~~~~~~~~ 477 (491)
.+.|.++|+.+++.+..+.. .....+++|+|||+ +++++. .++.|.+||+.+.+....
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999999988863 34689999999999 777777 589999999988775543
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=3.9e-16 Score=148.10 Aligned_cols=261 Identities=11% Similarity=-0.006 Sum_probs=165.1
Q ss_pred EEEECCCCeEEEEEeecCC--CceeEEEEEECCCCCeEEEEECC---CeEEEEECCCCccccccccccccccccccccCC
Q 011179 149 RIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 149 ~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
...|..++..+..+..... +...+..++|+|||++|+.+... ..|.+|++.+++...+....
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~------------- 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK------------- 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-------------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-------------
Confidence 3446777755544322111 11125678999999998887653 47899999887654332211
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE-------------------EEEecCCCCE
Q 011179 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-------------------VCFGDESGHL 284 (491)
Q Consensus 224 ~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~ 284 (491)
......+.|+|||++|+.++.++.|++||+.+++.......+...... +.|+ ++++.
T Consensus 80 ---~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~ 155 (396)
T 3c5m_A 80 ---GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSW 155 (396)
T ss_dssp ---CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSH
T ss_pred ---CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC-CCCcc
Confidence 001223689999999999999999999999988765555434432222 2344 45555
Q ss_pred EEEE-----eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcC-CCCEEEEeeCC------CcEEEEeCCCCCCcc
Q 011179 285 IYSG-----SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNA 352 (491)
Q Consensus 285 l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~ 352 (491)
++.. ..+..|.+||+. .++.. .+..+...+..+.|+| +++.|+..+.+ ..|.+||+....
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~----~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--- 227 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIE----TGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--- 227 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETT----TCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---
T ss_pred eeeeeeccCCCcceEEEEECC----CCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---
Confidence 4433 356689999986 44333 3345677899999999 78877766543 357888875421
Q ss_pred cccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC-----CeEEEEEC
Q 011179 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDL 427 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~ 427 (491)
...+..+... .....+.|+|+|++|+.++.+ +.|++||+
T Consensus 228 --------------------------------~~~l~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 228 --------------------------------VRKIKEHAEG----ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp --------------------------------CEESSCCCTT----EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred --------------------------------eeEeeccCCC----ccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 1111111000 112334678899988777654 45999999
Q ss_pred CCCcEEEeeccCCCCeeeeEecC-CCCeEEEEe----------------CCCcEEEEcCCCCC
Q 011179 428 VSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSS----------------WDGDVVRWEFPGNG 473 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~~----------------~Dg~v~iw~~~~~~ 473 (491)
.+++...... .. ... +.|+| ||++|++++ .++.|++||+..+.
T Consensus 272 ~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 272 ETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp TTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8887544332 11 233 89999 999888765 34789999987654
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=4.2e-13 Score=131.57 Aligned_cols=300 Identities=11% Similarity=0.077 Sum_probs=195.1
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEEC----CCCCeEEEEEC-CCeEEEEE
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS----PDQRHLVYASM-SPIVHIVD 197 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~-d~~i~iw~ 197 (491)
..+..+.|||||++|++++.++.|.+||+. +++.+.++.... ....++|+ |||++++++.. ++.|.++|
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence 356789999999999999999999999995 666665543321 46789999 69998888765 58999999
Q ss_pred CCCCccccccccccccccccccccCCCCcee-cEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEE-eccCCCeeE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRI-LAHTSDVNT 274 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~ 274 (491)
..+.+............ .....|.. .+..+..++++..+++ ...+|.|.++|....+.+... .........
T Consensus 273 ~~t~~~~~~i~~~~~~~------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 273 GETLEPKKIQSTRGMTY------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp TTTCCEEEEEECCEECT------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred CCCCcEEEEEecccccc------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence 98877665443321100 00001111 5778888988765444 456799999999876432221 133456778
Q ss_pred EEEecCCCCEEEEEe-CCCeEEEEecccccCCCceeeEec-----cccC-cEEEEEEcCCCCEE-EEee-CCCcEEEEeC
Q 011179 275 VCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLM-----GHLE-GITFIDSRGDGRYL-ISNG-KDQAIKLWDI 345 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~-~i~~~~~~~~~~~l-~s~~-~dg~i~iwd~ 345 (491)
+.|+ +++++++++. .++.|.++|+. +++.+..+. .|.+ .+. + ++|++..+ +++. .++.|.++|.
T Consensus 347 ~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 347 GGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 8997 7788776655 57899999997 544444332 2332 222 2 58874444 4443 4689999998
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-------
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------- 418 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------- 418 (491)
.+...... . .+.+.++...... .+....+|+++++.+...
T Consensus 420 ~~~~~~~~--------~-------------------~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 420 DPEGHPDN--------A-------------------WKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp CTTTCTTT--------B-------------------TSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHHH
T ss_pred CCCCCccc--------c-------------------CEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCccc
Confidence 76321100 0 1344444433210 011245789999998763
Q ss_pred CCeEEEEECCCC-----cE-EEeec--------cCCCCeeeeEecCCCCeEEEEeC-----CCcEEEEcCCCCCC
Q 011179 419 DSCVYVYDLVSG-----EQ-VAALK--------YHTSPVRDCSWHPSQPMLVSSSW-----DGDVVRWEFPGNGE 474 (491)
Q Consensus 419 dg~i~iwd~~~~-----~~-~~~~~--------~h~~~v~~~~~sp~~~~l~s~~~-----Dg~v~iw~~~~~~~ 474 (491)
.+.|.++|+.+. .. ...+. .....+..+.|+|+|+.+..+.+ ++.|.|+|..+.+.
T Consensus 467 ~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 467 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 358999999876 21 12221 12357899999999997766643 79999999887653
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.5e-14 Score=131.27 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=159.5
Q ss_pred eEEEEEECCCCC-eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
...+++|+|+++ +++++..++.|..|+..++ ...... +...+.+++++++|+++++...++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~-----------------~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH-----------------PSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEES-----------------SCSSEEEEEECTTCCEEEEETTTT
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC-----------------CCCCcceeeECCCCcEEEEecCCC
Confidence 477899999998 6777788899999999876 322111 112688999999999877776778
Q ss_pred eEEEEECCCCeeeEEEecc----CCCeeEEEEecCCCCEEEEEeC-----------------CCeEEEEecccccCCCce
Q 011179 250 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSD-----------------DNLCKVWDRRCLNVKGKP 308 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~ 308 (491)
.|.+||..+++........ ...+..+++. ++++++++.+. .+.|..++.. ..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~ 163 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GT 163 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SC
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC------CC
Confidence 9999999887754333221 2356789996 78888887321 2345555432 23
Q ss_pred eeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEE
Q 011179 309 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 309 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
+..+..+......++|+|+++.+++.+.++.|.+|++....... .....+
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------------~~~~~~ 213 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------------YQGVHF 213 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------------------------------EEEEEE
T ss_pred EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------------------------------CCCeEe
Confidence 34445566678899999999998777778999999986211000 001111
Q ss_pred eCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEe-cCCCCeEEEEeCCCcEEEE
Q 011179 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-HPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~s~~~Dg~v~iw 467 (491)
..+. .....++++++|++.++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +..+
T Consensus 214 ~~~~------~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~ 282 (296)
T 3e5z_A 214 TVEP------GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSI 282 (296)
T ss_dssp CCSS------SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEE
T ss_pred eCCC------CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEE
Confidence 1000 011233567789866665 7889999985 888888887777 999999 58999888888764 4344
Q ss_pred cCCC
Q 011179 468 EFPG 471 (491)
Q Consensus 468 ~~~~ 471 (491)
+...
T Consensus 283 ~~~~ 286 (296)
T 3e5z_A 283 ETNV 286 (296)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 4433
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=6.5e-13 Score=120.55 Aligned_cols=278 Identities=11% Similarity=0.047 Sum_probs=185.1
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
....+.+++++++|++.++...++.|.+||.. +... .... ......+..+++.++++++++...++.|..+|.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEV-PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEEC-CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 35678999999999988877678999999988 5333 2222 2223468999999999877776667889999987 54
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~ 281 (491)
.... .... ....+.++++.++++++++...++.|..+|.. ++.... +......+..+++. ++
T Consensus 94 ~~~~-~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~ 156 (300)
T 2qc5_A 94 FTEY-PLPQ--------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD 156 (300)
T ss_dssp EEEE-ECSS--------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred eEEe-cCCC--------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence 4211 1110 01268899999999977777668899999987 554322 22345678899996 77
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++++++...++.|..+|.. +... .....+...+..+++.++|++.++....+.|.+||... .
T Consensus 157 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~----------- 219 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E----------- 219 (300)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C-----------
T ss_pred CCEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c-----------
Confidence 8877776667899999873 2222 12223445688999999998777776677899998732 1
Q ss_pred ceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE-eeccC
Q 011179 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYH 439 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h 439 (491)
+..+........ ...++++++|++.++...++.|..||. +++... .+...
T Consensus 220 ------------------------~~~~~~~~~~~~----~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 270 (300)
T 2qc5_A 220 ------------------------ISEYDIPTPNAR----PHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE 270 (300)
T ss_dssp ------------------------EEEEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST
T ss_pred ------------------------EEEEECCCCCCC----ceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc
Confidence 111110000011 122355668887666666789999998 454432 23334
Q ss_pred CCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 440 ~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
...+.+++++++|.++++.. . .|..++.
T Consensus 271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 56789999999998666554 4 6666654
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1e-14 Score=130.48 Aligned_cols=241 Identities=8% Similarity=0.015 Sum_probs=161.3
Q ss_pred eEEEEEECCCCCeEE-EEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
...++++++++++++ +...++.|.+|+..+........ .+...+.+++++++++.+++.. ++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF----------------NGLYQPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC----------------CSCCSCCCEEECTTCCEEEEET-TT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee----------------CCcCCcceeEECCCCCEEEEcC-CC
Confidence 578899999998666 44678899999876554321110 0112467799999998555554 88
Q ss_pred eEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC
Q 011179 250 CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 328 (491)
.|.+||....... .+. .....+..+++. ++++++++...++.|.+|+.. ..............+..++++++|
T Consensus 88 ~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 88 RVVTLAAGSNNQT-VLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp EEEEECTTCSCCE-ECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTC
T ss_pred EEEEEeCCCceEe-eeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCC
Confidence 9999998766543 232 233578999996 678888877778899999754 222222122233456789999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC
Q 011179 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
+++++...++.|.+||...... ....... . .....+++++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~-----------------------------------~~~~~~~-~----~~p~~i~~d~ 201 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQ-----------------------------------VVLPFTD-I----TAPWGIAVDE 201 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCE-----------------------------------EECCCSS-C----CSEEEEEECT
T ss_pred CEEEEECCCCEEEEEecCCCce-----------------------------------EeecccC-C----CCceEEEECC
Confidence 9777777788999999875221 0000000 0 1112235666
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
+|.++++...++.|.+||............+...+.+++++|+|+++++...++.|+++++...+.
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 887777777788999999876554333223345789999999999888888999999999876543
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=8.1e-15 Score=136.36 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=150.8
Q ss_pred eEEEEEECCCCCeEEEEE---------CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCE
Q 011179 171 TVTDTSLSPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 241 (491)
.+...++ ||++++... .++.|.+|++.+++...+ ..+..++|+|||++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------~~~~~~~~SpDg~~ 72 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------ENATMPRISPDGKK 72 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------------------ESCEEEEECTTSSE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------------------ccCCCeEECCCCCE
Confidence 4677777 888887653 256799999988764332 15778999999999
Q ss_pred EEEEeCC---C--eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC-------------------------
Q 011179 242 LVAGSSD---D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------------------------- 291 (491)
Q Consensus 242 l~~~~~d---g--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------------------- 291 (491)
|+..+.+ + .|++||+.+++...... +.. +..++|+ |+++.|+.++.+
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 9987754 2 48888998887654443 334 9999998 788888777632
Q ss_pred --CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC-------cEEEEeCCCCCCcccccCCCccce
Q 011179 292 --NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-------AIKLWDIRKMSSNASCNLGFRSYE 362 (491)
Q Consensus 292 --g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~ 362 (491)
..|.+||+. .+..+..+.. . .+..+.|+|+| +++++..++ ...||.+.+
T Consensus 150 ~~~~l~~~d~~----~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~--------------- 207 (347)
T 2gop_A 150 EKTTFWIFDTE----SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED--------------- 207 (347)
T ss_dssp CEEEEEEEETT----TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---------------
T ss_pred ccceEEEEECC----CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---------------
Confidence 568889986 4444344444 3 77889999999 777776542 334444332
Q ss_pred eeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecC--------CeEEEEECCCCcEEE
Q 011179 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSGEQVA 434 (491)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~ 434 (491)
.....+..+ .. ...+ ||+|++|+.++.+ ..|++|| +++...
T Consensus 208 --------------------~~~~~l~~~---~~----~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 208 --------------------GKEEKMFEK---VS----FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp --------------------TEEEEEEEE---ES----EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred --------------------CceEEeccC---cc----eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 111112111 01 1112 7799988877754 4788888 666665
Q ss_pred eeccCCCCeee-eEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 435 ALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~-~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
....|...+.. +.|+ |+ ++++++.++.+++| +.
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 55667778886 9999 88 99999999999999 87
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=2.1e-14 Score=132.24 Aligned_cols=260 Identities=10% Similarity=0.015 Sum_probs=173.5
Q ss_pred cCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccc
Q 011179 144 QASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 144 ~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.++.|.+||..+++....+.. ..........+.+. +++..++...++.|.+||..+++........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence 378999999999854432211 11222346677774 4555555666799999999988875443211
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEecCCCCEEEEEe-CCCe
Q 011179 221 ADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGS-DDNL 293 (491)
Q Consensus 221 ~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~-~dg~ 293 (491)
.....++++++++ ++++. .++.|.+||..+++....+.... .....+++ .++.++++.. .++.
T Consensus 84 -------~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 84 -------TSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNR 153 (328)
T ss_dssp -------SSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCE
T ss_pred -------CCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCE
Confidence 1577899999985 55555 78999999999998877765332 15567777 3444554444 4899
Q ss_pred EEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC----------CcEEEEeCCCCCCcccccCCCcccee
Q 011179 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
|.++|+. ..+.+..+... .....+.++|+|++++++..+ +.|.++|..+.
T Consensus 154 v~viD~~----t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--------------- 213 (328)
T 3dsm_A 154 ILKIDTE----TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--------------- 213 (328)
T ss_dssp EEEEETT----TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------------
T ss_pred EEEEECC----CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------------
Confidence 9999997 55555555432 334678899999977776654 78999998763
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEe--eccCCC
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA--LKYHTS 441 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~ 441 (491)
.....+..... .....++++|+++.|+++.. .|.+||..+++.... +..+..
T Consensus 214 -------------------~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 214 -------------------TVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp -------------------EEEEEEECCTT-----CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSS
T ss_pred -------------------eEEEEEecCCC-----CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCC
Confidence 22222221100 01233467788999888765 899999988876421 222245
Q ss_pred CeeeeEecCC-CCeEEEE----eCCCcEEEEcCC
Q 011179 442 PVRDCSWHPS-QPMLVSS----SWDGDVVRWEFP 470 (491)
Q Consensus 442 ~v~~~~~sp~-~~~l~s~----~~Dg~v~iw~~~ 470 (491)
....++++|+ +.++++. ..++.|.+|+..
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 7889999994 5555555 578999999987
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=6e-14 Score=125.27 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=141.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
.+++|++++.++.|.+||.++|+.+.+...... ..+.++.++|+|++++ +.++.|..||. +++........
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~---- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP---- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC----
Confidence 467899999999999999999977766543221 2477889999999888 45788999998 67655443321
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEec------cCCCeeEEEEecCCCCEEEE
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s 287 (491)
....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+++. ++++++++
T Consensus 75 -----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~ 141 (276)
T 3no2_A 75 -----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVP 141 (276)
T ss_dssp -----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEE
T ss_pred -----------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEE
Confidence 1125788999999999999887 788888886 6776666542 21234556675 78999999
Q ss_pred EeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 288 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
...++.|..||. .++.+..+... ....++...++|++++++..++.|..+|..++
T Consensus 142 ~~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 142 LFATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp ETTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred ecCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999999999997 46667666544 34556778899999999988889999998863
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=2.2e-14 Score=128.15 Aligned_cols=213 Identities=13% Similarity=0.056 Sum_probs=157.5
Q ss_pred CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+++|++++.++.|.+||.++++.......... ..+.++.++|+|++++ +.++.|+.||. ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------------WECNSVAATKAGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CC
Confidence 457889999999999999989987655432210 1467889999999888 45778999999 88
Q ss_pred eeeEEEecc-CCCeeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCCceeeEec------cccCcEEEEEEcCCCCEE
Q 011179 260 KLSLRILAH-TSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 260 ~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l 331 (491)
+.+.++..+ ...+.++.+. ++++++++.+. ++.|..+|. .++.+..+. .+......+.+.++|+++
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp CEEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred CEEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 888888764 3578888887 88999998887 777777775 455544443 122344556789999999
Q ss_pred EEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCc
Q 011179 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++...++.|..||.. + +.+..+...... ++....++|+
T Consensus 140 v~~~~~~~v~~~d~~-G----------------------------------~~~w~~~~~~~~-------~~~~~~~~g~ 177 (276)
T 3no2_A 140 VPLFATSEVREIAPN-G----------------------------------QLLNSVKLSGTP-------FSSAFLDNGD 177 (276)
T ss_dssp EEETTTTEEEEECTT-S----------------------------------CEEEEEECSSCC-------CEEEECTTSC
T ss_pred EEecCCCEEEEECCC-C----------------------------------CEEEEEECCCCc-------cceeEcCCCC
Confidence 999999999999986 3 344444433211 1123346899
Q ss_pred EEEEEecCCeEEEEECCCCcEEEeeccCC------CCeeeeEecCCCCeEEEE
Q 011179 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHT------SPVRDCSWHPSQPMLVSS 458 (491)
Q Consensus 412 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~~~~sp~~~~l~s~ 458 (491)
++++++.++.|..+|..+|+.+..+..+. ..+..++..++|.++++.
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 99999888899999999999998886332 237788889999988776
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=8.9e-14 Score=127.84 Aligned_cols=291 Identities=14% Similarity=0.051 Sum_probs=187.3
Q ss_pred EEEcCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE----------CCCeEE
Q 011179 130 SQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVH 194 (491)
Q Consensus 130 ~~~s~dg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~ 194 (491)
....|+++.+.+... ++.|.++|..+++.+..+..... + . ++++||+++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 345689988887765 67999999999987777654433 3 3 99999999888775 367899
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCe
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
+||..+.+......+...... ........++|+|||++++++.. ++.|.++|+.+++.+.++.... +
T Consensus 113 viD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~ 181 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C 181 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred EEECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c
Confidence 999999887655443210000 00002345899999999998864 6899999999999988885321 1
Q ss_pred eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc----cCcEE-EEEE-cCCCCEEEEeeCCCcEEEEeCC
Q 011179 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGIT-FIDS-RGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~-~~~~-~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
...+ |...+.+++.+.||.+.+.++... ++.......+ ..++. ...| .++|++++ .+.+|.|.+.|+.
T Consensus 182 -~~~~-P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 182 -YHIF-PTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp -EEEE-EEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred -ceee-cCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 2233 566778888889999999998621 2221111111 12221 1345 46776555 4558999999997
Q ss_pred CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeC---CceeEeeEEEEecccccCCCcEEEEEec-----
Q 011179 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---HSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 418 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~~~~----- 418 (491)
+...... ..+..+.. ...... .-.....++++++.++....
T Consensus 256 ~~~~~v~-----------------------------~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 256 SGDAKFL-----------------------------PAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp TSSCEEC-----------------------------CCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCcceee-----------------------------cceeccccccccccccC--CCcceeeECCCCCeEEEEecccccc
Confidence 6331110 00000000 000000 00001134567888777653
Q ss_pred -----CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEE-eCCCcEEEEcCCCCCC
Q 011179 419 -----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 -----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~-~~Dg~v~iw~~~~~~~ 474 (491)
.+.|.++|+.+++.+..+.. ...+..|+++||++ +|+++ ..++.|.++|..+++.
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 25799999999999988863 23788999999997 66665 4589999999987754
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.6e-13 Score=126.88 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=142.9
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC----CeEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH 194 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~ 194 (491)
.+..+...+.+++|+|+|++++++..++.|.+||..++...... . .+...+.+++++|+++++++...+ +.|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-e--CCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 44556667899999999998888888999999999887543322 1 223469999999999877776666 6899
Q ss_pred EEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEecc
Q 011179 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 195 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h 268 (491)
+||..++......... .+...+.+++++|+|+++++... .+.|+.+|..+++... +..+
T Consensus 116 ~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 116 AATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCEEEEEEccC--------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 9998877643221100 01226889999999987776543 3567777776555433 3334
Q ss_pred CCCeeEEEEecCCCCEE-EEEeCCCeEEEEecccccCCCceee--------EeccccCcEEEEEEcCCCCEEEEeeCCCc
Q 011179 269 TSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG--------VLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
...+..++|+ ++++.| ++.+.++.|.+||+... +..+. .+.++ ..+..++++++|+++++...++.
T Consensus 181 ~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 181 ISVANGIALS-TDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp ESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence 4567899997 677755 55556889999998521 11111 11122 36778999999998888878889
Q ss_pred EEEEeCC
Q 011179 340 IKLWDIR 346 (491)
Q Consensus 340 i~iwd~~ 346 (491)
|.+||..
T Consensus 256 v~~~d~~ 262 (333)
T 2dg1_A 256 VLVFNKR 262 (333)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999974
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=1.9e-14 Score=147.75 Aligned_cols=277 Identities=14% Similarity=0.095 Sum_probs=173.4
Q ss_pred cCCCCEEEEEEcCCe---EEEE--ECC---CCeEEEEEe----ecCCCceeEEEEEECCCCCeEEEEECC-----CeEEE
Q 011179 133 SADGSLFVAGFQASQ---IRIY--DVE---RGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHI 195 (491)
Q Consensus 133 s~dg~~la~~~~dg~---i~iw--d~~---~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i 195 (491)
+|||++++....++. -.+| +.. .+. ...+. ...++...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 489998886654432 4445 443 332 22221 122334578899999999999987654 46999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCee
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL 261 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~--------------i~vwd~~~~~~ 261 (491)
||+.+++..... .. ...+..++|+|| +.|+.++.++. |++|++.++..
T Consensus 194 ~dl~tg~~~~~~-~~----------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~ 255 (741)
T 1yr2_A 194 VGVADGKPLADE-LK----------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS 255 (741)
T ss_dssp EETTTCCEEEEE-EE----------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred EECCCCCCCCcc-CC----------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence 999998764321 00 012346899999 98988876553 99999987652
Q ss_pred --eEEEe--ccCCCeeEEEEecCCCCEEEEEeCCC-----eEEEEecccccCCC--ceeeEeccccCcEEEEEEcCCCCE
Q 011179 262 --SLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 262 --~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
...+. .+...+..+.|+ +++++|+..+.++ .|.+||+. .+ .....+..+...+.... +|+|+.
T Consensus 256 ~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 256 ADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred hCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCE
Confidence 22222 233458899997 7888887776543 89999986 33 21445555555555553 488888
Q ss_pred EEEeeCC----CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 331 LISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 331 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|+..+.+ +.|.+||+.+.. . .....+..+.. .+..+ .+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~--~l~~~----~~ 371 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKD--NLESV----GI 371 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSS--EEEEE----EE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCC--eEEEE----EE
Confidence 8877654 459999986521 0 01111112211 11111 22
Q ss_pred cCCCcEEEEEecCCeEEEEECC-CCcEEEeecc-CCCCeeeeEecCCCCeEEEE----eCCCcEEEEcCCCCC
Q 011179 407 STGQKYIYTGSHDSCVYVYDLV-SGEQVAALKY-HTSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG 473 (491)
Q Consensus 407 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~----~~Dg~v~iw~~~~~~ 473 (491)
+ ++.++++...|+..+||.+. +++.+..+.. +.+.+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2 56788888889877766554 4666666664 36778999999999865532 234789999987654
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=5.6e-14 Score=125.65 Aligned_cols=241 Identities=10% Similarity=0.032 Sum_probs=160.8
Q ss_pred ceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
...+++++++|++++ +...++.|.+|+..++... . ........+.+++++++++++++.. ++.|.+|+..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--~-~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--V-LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E--E-CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc--e-EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 5467889999997664221 1 1122223578899999998555554 889999998765432
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCE
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 284 (491)
.... .....+..++++++|+.+++...++.|.+|+..+.............+..+++. +++++
T Consensus 101 ~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l 163 (270)
T 1rwi_B 101 VLPF----------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV 163 (270)
T ss_dssp ECCC----------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred eeec----------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence 2110 011257899999999977777778899999876554432222333467889996 67887
Q ss_pred EEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceee
Q 011179 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 285 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 164 ~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-------------- 225 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------------- 225 (270)
T ss_dssp EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------
T ss_pred EEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------
Confidence 7777778899999986 3332222223336688999999998878777788999999865211
Q ss_pred eeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
....... . .....++++++|+++++...++.|+++++...+
T Consensus 226 ---------------------~~~~~~~-~----~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 ---------------------TVLPFTG-L----NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---------------------EECCCCS-C----SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---------------------eeeccCC-C----CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 0000000 0 111233566789988888889999999986554
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=1.1e-13 Score=129.63 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=186.2
Q ss_pred CCCCEEEEEEcC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE----------CCCeEEEEEC
Q 011179 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV 198 (491)
Q Consensus 134 ~dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~iw~~ 198 (491)
++++++.+.... +.|.++|..+++.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666655442 6999999999988877665443 3 799999999888876 3678999999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 276 (491)
.+.+......+..... + ........+.|+|||++++++.. ++.|.+.|+.+++.+.++.-.. . ..
T Consensus 157 ~t~~vv~~I~v~g~~r---~------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 157 VTFLPIADIELPDAPR---F------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTCCEEEEEEETTCCC---C------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EE
T ss_pred CCCcEEEEEECCCccc---c------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--ee
Confidence 9988765544320000 0 00002335799999999999874 5789999999999988875321 1 22
Q ss_pred EecCCCCEEEEEeCCCeEEEEecccccCCCceeeE----eccccCcE-EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 277 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
..|.....+++.+.||.+.+.+.. .++.... +.....++ ..+.+.+++..++.....+.+.+.|+......
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 223444667777788888877774 2222211 11111111 13467888888877778899999998652211
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc-eeEeeEEEEecccccCCCcEEEEEec----------CC
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSH----------DS 420 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg 420 (491)
.. .......... .............++|+++.+++... ++
T Consensus 300 v~-----------------------------~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 300 FR-----------------------------APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp EC-----------------------------CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred Ee-----------------------------eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 00 0000000000 00000000001245668887777643 35
Q ss_pred eEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eEEEEe-CCCcEEEEcCCCCCCC
Q 011179 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~~-~Dg~v~iw~~~~~~~~ 475 (491)
.|.++|+.+++.+..+... .....+.|+||++ +++++. .++.|.++|+.+.+..
T Consensus 351 ~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 351 FVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 7999999999999988632 2588999999999 888887 5999999999887644
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=9.2e-14 Score=142.62 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=134.0
Q ss_pred CCCceEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCe-----
Q 011179 123 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----- 192 (491)
Q Consensus 123 h~~~i~~~~~s~dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----- 192 (491)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44478899999999999987654 469999999986654311 1112357899999 99999887654
Q ss_pred ---------EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 011179 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA 258 (491)
Q Consensus 193 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~ 258 (491)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8899987765321111100 11222478899999999998877544 899999987
Q ss_pred C--eeeEEEeccCCCeeEEEEecCCCCEEEEEeCC----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEE
Q 011179 259 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 259 ~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 332 (491)
+ +....+..+...+....+ ++++.|+..+.+ +.|.+||+.... ......+..+...+..+.++ ++.+++
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~ 378 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFA 378 (741)
T ss_dssp TEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred CCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEE
Confidence 7 314556566655555543 566777766653 459999986211 22333344444556677887 566778
Q ss_pred EeeCCCcEEEEeCC
Q 011179 333 SNGKDQAIKLWDIR 346 (491)
Q Consensus 333 s~~~dg~i~iwd~~ 346 (491)
+...|+..+||.+.
T Consensus 379 ~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 379 SYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88889887777654
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=6e-13 Score=121.77 Aligned_cols=248 Identities=12% Similarity=0.136 Sum_probs=161.2
Q ss_pred eEEEEEECCCCCeEEE-------EECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEE
Q 011179 171 TVTDTSLSPDQRHLVY-------ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GREL 242 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~-------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l 242 (491)
...+++|++++.++++ ...++.|.+|+..+++...... .. ..++...+.+++++++ ++ |
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-----------~~~~~~~~~~i~~~~~~g~-l 85 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE-----------VNGYGGIPAGCQCDRDANQ-L 85 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE-----------ETTEECCEEEEEECSSSSE-E
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc-----------cCCCCCCCceEEEecCCCc-E
Confidence 4678999999987777 5678899999988776533211 00 0123346889999999 66 4
Q ss_pred EEEeCCCeEEEEECCCCeeeEE-Eec----cCCCeeEEEEecCCCCEEEEEeCC---------------CeEEEEecccc
Q 011179 243 VAGSSDDCIYVYDLEANKLSLR-ILA----HTSDVNTVCFGDESGHLIYSGSDD---------------NLCKVWDRRCL 302 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~ 302 (491)
++++..+.|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||..
T Consensus 86 ~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 86 FVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp EEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred EEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 444445579999998 665322 211 12357899996 778887776654 466666652
Q ss_pred cCCCceeeEeccccCcEEEEEEc----CCCCEEEEe-eCCCcEEEEeCCC-CCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSR----GDGRYLISN-GKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
++ ...+..+......++++ |+++.|+.+ ..++.|.+||+.. .....
T Consensus 162 ---g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------ 213 (314)
T 1pjx_A 162 ---GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------ 213 (314)
T ss_dssp ---SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------
T ss_pred ---CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------
Confidence 22 22233344556889999 999765554 5678899999752 10000
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCC-eE
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-ML 455 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l 455 (491)
......+..+.. .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++
T Consensus 214 -----~~~~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 214 -----KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp -----EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred -----ceEEEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 001111111110 0112235667899888887889999999987887777776767899999999999 44
Q ss_pred EEEeCCCcEEEEcCCCCC
Q 011179 456 VSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 456 ~s~~~Dg~v~iw~~~~~~ 473 (491)
++...++.|..|++....
T Consensus 284 v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEETTTTEEEEEECSSCB
T ss_pred EEeCCCCeEEEEeCCCCC
Confidence 555567889999987643
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=8.2e-12 Score=113.18 Aligned_cols=237 Identities=9% Similarity=0.035 Sum_probs=162.0
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
..+.+++++++++.+++...++.|.+|+.. +....... .. +...+.+++++++|..+++...++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~--------------~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-PT--------------PDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-SS--------------TTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-Cc--------------ccCceeeEEECCCCCEEEeCCCCC
Confidence 368999999999977766667899999987 54322111 10 112688999999999777776688
Q ss_pred eEEEEECCCCeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCC
Q 011179 250 CIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 327 (491)
.|..||.. ++. ..+. .....+..+++. ++++++++...++.|.+||.. ..........+...+..+++.++
T Consensus 79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 79 KIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDD----GKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECCC----CCEEEecCCCCCCCCceEEEcCC
Confidence 99999986 332 2232 245678899996 778888887778899999873 11111122234456889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
|+++++...++.|..||. +.. +..+........ ...++++
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~-----------------------------------~~~~~~~~~~~~----~~~i~~~ 191 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGD-----------------------------------ITEFKIPTPASG----PVGITKG 191 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCC-----------------------------------EEEEECSSTTCC----EEEEEEC
T ss_pred CCEEEEeCCCCEEEEEcC-CCc-----------------------------------EEEeeCCCCCCc----ceeEEEC
Confidence 988887777788999998 421 111111000011 1223456
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEe-eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
++|++.++...++.|.+||. +++.... +..+...+.+++++++|+++++...++.|.+|+..
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 68887777667889999999 7664432 33455678999999999977766677889999973
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=8.6e-13 Score=121.31 Aligned_cols=258 Identities=15% Similarity=0.140 Sum_probs=167.6
Q ss_pred EEEcCCCCEEEEEE----------cCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEECCCCCeEEEEEC--CCeE
Q 011179 130 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPIV 193 (491)
Q Consensus 130 ~~~s~dg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~--d~~i 193 (491)
+++||||++|+++. .++.|.+||..+.+.+..+....+. ......++|+|||+++.++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 3678999999999877776554211 113456899999999988864 6899
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEEeccC---
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHT--- 269 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~--- 269 (491)
.++|+.+++......+.. . ...+....+.+++.+.||.+.+.++.+ ++.......+.
T Consensus 163 sVID~~t~~vv~tI~v~g------------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD------------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEETTTTEEEEEEECCS------------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEECCCCcEEEEEECCC------------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 999999998766543321 1 122333455677778888888888876 55432221111
Q ss_pred -CCe-eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec----------cccCcEEEEEEcCCCCEEEEeeC-
Q 011179 270 -SDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK- 336 (491)
Q Consensus 270 -~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~s~~~- 336 (491)
.++ ....|.++++++++ .+.+|.|.+.|+.... .+....+. -..+....++++++++.++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc--ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 122 12466546665554 6668999999985221 11222111 01233345777999888877643
Q ss_pred ---------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 337 ---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 337 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.+.|.+.|+.+. +.+..+... ...+++.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence 256889999883 334433321 223455788
Q ss_pred CCCc-EEEEEe-cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCC
Q 011179 408 TGQK-YIYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 408 ~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 451 (491)
+|++ +|++.. .++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 8987 676655 4899999999999999998733 44566777776
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=1.7e-12 Score=119.42 Aligned_cols=248 Identities=9% Similarity=-0.023 Sum_probs=162.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
.....+++. +++++++...++.|.+||..+++.+..+.. ...+..++++++++..++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 345677774 345555666689999999999977766532 135888999999854444447899999999988765
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCC
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 282 (491)
........ .+.......+++ ++..|+++. .++.|.++|+.+++.+..+.. ......+.+. +++
T Consensus 119 ~~i~~g~~-----------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~-~dG 183 (328)
T 3dsm_A 119 GYIECPDM-----------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMD-KYN 183 (328)
T ss_dssp EEEECTTC-----------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEEC-TTS
T ss_pred EEEEcCCc-----------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEc-CCC
Confidence 43332210 000112334566 344555554 488999999999998877754 3345788886 778
Q ss_pred CEEEEEeCC----------CeEEEEecccccCCCceeeEeccc-cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCc
Q 011179 283 HLIYSGSDD----------NLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 283 ~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 351 (491)
++++++..+ +.|.++|.. ..+....+... ......++++|+++.|+++.. .|.+||..+....
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CEEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 777766554 789999986 55555444322 236789999999998887755 8999999774421
Q ss_pred ccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccC-CCcEEEEE----ecCCeEEEEE
Q 011179 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTG----SHDSCVYVYD 426 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~----~~dg~i~iwd 426 (491)
... . +... ......++++| ++.+.++. ..++.|.+||
T Consensus 258 ~~~-----------------------------~---~~~~------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 258 VRP-----------------------------F---LEFR------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SSC-----------------------------S---BCCC------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eee-----------------------------e---ecCC------CCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 100 0 0000 01122335666 45555555 5688999999
Q ss_pred CCCCcEEEeec
Q 011179 427 LVSGEQVAALK 437 (491)
Q Consensus 427 ~~~~~~~~~~~ 437 (491)
.. ++.+..+.
T Consensus 300 ~~-g~~~~~i~ 309 (328)
T 3dsm_A 300 PQ-GKLIDEFY 309 (328)
T ss_dssp TT-CCEEEEEE
T ss_pred CC-CCEEEEEE
Confidence 97 88888775
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=1.1e-11 Score=113.23 Aligned_cols=205 Identities=19% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCceEEEEEcCCCCEEEE-------EEcCCeEEEEECCCCeEEEEEe-ecCCCceeEEEEEECCC-CCeEEEEECCCeEE
Q 011179 124 TSRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH 194 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~-------~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~ 194 (491)
-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+..++++++ +++++ ++..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence 345689999999998888 6778999999988775432111 00123346899999999 66444 44455799
Q ss_pred EEECCCCccccc-cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------CeEEEEECCC
Q 011179 195 IVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEA 258 (491)
Q Consensus 195 iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d---------------g~i~vwd~~~ 258 (491)
+|+.+ ++.... ..... ......+.+++++++|+++++...+ +.|..||..
T Consensus 96 ~~d~~-g~~~~~~~~~~~------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSE------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEETT-SCEEECCSBCTT------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEeCC-CCEEEEEeccCC------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 99988 654332 21100 0111257889999999877776554 578888876
Q ss_pred CeeeEEEeccCCCeeEEEEe---cCCCC-EEEEEeCCCeEEEEecccccCCCc-----eeeEecccc-CcEEEEEEcCCC
Q 011179 259 NKLSLRILAHTSDVNTVCFG---DESGH-LIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHL-EGITFIDSRGDG 328 (491)
Q Consensus 259 ~~~~~~~~~h~~~v~~~~~~---~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~ 328 (491)
++... +..+......++++ .++++ ++++...++.|.+||+.. .+. ....+..+. .....++++++|
T Consensus 162 g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 162 GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEECCCC
Confidence 54433 33444556888886 04454 445556788999999751 111 222333333 567889999999
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q 011179 329 RYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 329 ~~l~s~~~dg~i~iwd~~~ 347 (491)
+++++...++.|.+||..+
T Consensus 238 ~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp CEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCEEEEEcCCC
Confidence 9888887888999999874
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.53 E-value=2.8e-12 Score=130.40 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=134.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEE-----cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC-----
Q 011179 122 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (491)
Q Consensus 122 ~h~~~i~~~~~s~dg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----- 191 (491)
+|...+..++|||||++||.+. ....|++||+.+++.+...... .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEEEEEEecCccccc
Confidence 4566889999999999998543 2357999999999755432111 012568999 999999998874
Q ss_pred --------eEEEEECCCCccccccccccccccccccccCCCC-ceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Q 011179 192 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA 258 (491)
Q Consensus 192 --------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~ 258 (491)
.|++|++.++......-... .. |.....++.|+|||++|+.... ...|+++|+.+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 39999988765422111111 01 2224678899999998866543 35899999987
Q ss_pred Ce-eeEEEeccCCCeeEEEEecCCCCEEEEEeCC---CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe
Q 011179 259 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 259 ~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 334 (491)
+. ....+..+....... +++.++.+++....+ +.|..+|+.... ......+..|...+. .|+++++.|+..
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--PAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--ccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 64 345566666666555 544555555555544 578888886221 111345566666665 889999888776
Q ss_pred eCCC---cEEEEeCCC
Q 011179 335 GKDQ---AIKLWDIRK 347 (491)
Q Consensus 335 ~~dg---~i~iwd~~~ 347 (491)
..++ .|++||+..
T Consensus 344 ~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 344 YMVDATARVEQFDYEG 359 (693)
T ss_dssp EEETTEEEEEEECTTS
T ss_pred EEECCeeEEEEEECCC
Confidence 6544 688888764
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=6.5e-11 Score=110.34 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=156.0
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEECCCCCeEEEEEC--CCe
Q 011179 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~~~--d~~ 192 (491)
.++|||||++|+++. .++.|.+||..+.+.+..+... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999885 3678999999988666655432 110 113457999999999998874 478
Q ss_pred EEEEECCCCccccc-cccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe----
Q 011179 193 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---- 266 (491)
Q Consensus 193 i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 266 (491)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence 99999 88876443 3221 123445554 45566778999999999 777653321
Q ss_pred -ccCCCe-eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc----------ccCcEEEEEEcCCCCEEEEe
Q 011179 267 -AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 267 -~h~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~s~ 334 (491)
....++ ....+.+.++.+++. +..+.+.+.|+.... ...+..+.- .......+.++|+++.++++
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred ccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCc--ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 111121 234455333444444 467899999985211 111111110 12234457889998887775
Q ss_pred eC----------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecc
Q 011179 335 GK----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 335 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
.. .+.|.++|+.+. +.+..+.... ..+.+
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i 323 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAI 323 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeE
Confidence 43 357999998873 3444443222 12455
Q ss_pred cccCCCc-EEEEEe-cCCeEEEEECCCCcEEEee
Q 011179 405 VYSTGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 405 ~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 436 (491)
.++|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7888999 777777 4899999999999998884
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=4.8e-12 Score=119.75 Aligned_cols=201 Identities=10% Similarity=0.077 Sum_probs=136.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC--eEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~iw~~~~~ 201 (491)
-.....++|+++|+++++...++.|++||..++.... .... . . ... ++|+|+++.|+++..++ .|.+|+..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~-~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-F-K-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-C-C-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-C-C-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 3467899999999987877778999999998874433 2222 1 1 233 99999999998888766 7888887654
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE----EeccCCCe--eEE
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTV 275 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~h~~~v--~~~ 275 (491)
........... .....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..+
T Consensus 205 ~~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 205 WAPTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp TCEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred ceeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 43111100000 0112567789999555666677789999999987764322 11222222 399
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc---------------cCcEEEEEEcCCCCEEEEee-CCCc
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISNG-KDQA 339 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~s~~-~dg~ 339 (491)
+|+|.++.++++-..++.|+.|+.. +. +..+.++ -.....++++|+|+++++-. .++.
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 9984467777777788999999874 22 2223222 23478899999999888877 7889
Q ss_pred EEEEeCCC
Q 011179 340 IKLWDIRK 347 (491)
Q Consensus 340 i~iwd~~~ 347 (491)
|+.|++.+
T Consensus 347 I~~~~~~~ 354 (409)
T 3hrp_A 347 LRKLDILD 354 (409)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999755
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=2.6e-12 Score=121.55 Aligned_cols=239 Identities=10% Similarity=0.148 Sum_probs=158.5
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD- 249 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg- 249 (491)
.+..++|+++++++++...++.|++||..++.......... ... ++|+++++.|+++..++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----------------~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----------------GGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----------------BCB-CEECTTSSEEEEEBSSTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----------------CCc-eeEecCCCcEEEEecCCC
Confidence 58899999999977777777899999998877654332110 223 89999999999888766
Q ss_pred -eEEEEECCCCeeeEEE----eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE----eccccCcE-
Q 011179 250 -CIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI- 319 (491)
Q Consensus 250 -~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i- 319 (491)
.|++++...+.....+ ......+.+++++|.++. |+.+..++.|+.||.. ....... ..++...-
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSS
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECC----CCCEEEEecccccCCCCCCc
Confidence 8999998766543333 224567789999733554 4457778899999986 2222111 11222222
Q ss_pred -EEEEEcCC-CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCc-----
Q 011179 320 -TFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----- 392 (491)
Q Consensus 320 -~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 392 (491)
..++|+|+ +.++++-..++.|+.|+.... +..+.++.
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------------------------------------~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------------------------------------CEWFCGSATQKTV 312 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC------------------------------------EEEEEECTTCCSC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC------------------------------------EEEEEeCCCCCCc
Confidence 38999995 666666667788999987641 11111110
Q ss_pred -e---eEeeEEEEecccccCCCcEEEEEe-cCCeEEEEECCCCcEEEeeccC---------------CCCeeeeEecCCC
Q 011179 393 -V---LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH---------------TSPVRDCSWHPSQ 452 (491)
Q Consensus 393 -~---~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~~~~~sp~~ 452 (491)
. ..........++++++|+++++-. .++.|+.||+.+++.. .+.++ -.....+++++++
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 0 000011123446777999777777 7899999998777643 33333 2357899999998
Q ss_pred CeEEEEeCCCcEEEEcC
Q 011179 453 PMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 453 ~~l~s~~~Dg~v~iw~~ 469 (491)
.++++-..++.|+.+++
T Consensus 392 ~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEESTTCEEEEEEE
T ss_pred CEEEEECCCCeEEEEEe
Confidence 88888888888888765
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=1.1e-11 Score=112.32 Aligned_cols=229 Identities=8% Similarity=0.041 Sum_probs=146.7
Q ss_pred eEEEEEECCCCC-eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
-.....|+|++. ++++...++.|..||..++..... .. ...+.+++++++|++++ +. ++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~~~~i~~~~dG~l~v-~~-~~ 73 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM-----------------DAPVSSVALRQSGGYVA-TI-GT 73 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC-----------------SSCEEEEEEBTTSSEEE-EE-TT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC-----------------CCceEEEEECCCCCEEE-EE-CC
Confidence 356788999655 455555678999999987754221 11 12688999999999444 44 56
Q ss_pred eEEEEECCCCeeeEEEecc----CCCeeEEEEecCCCCEEEEEeCC---------CeEEEEecccccCCCceeeEecccc
Q 011179 250 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
.|.+||..+++........ ...++.+++. ++++++++.... ....+|.+.. .+. +..+..+.
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~-~~~~~~~~ 148 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHH-VKKYFDQV 148 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSC-EEEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEEC---CCC-EEEEeecc
Confidence 7999999888754332221 2347889996 788876654321 2345555431 122 22333444
Q ss_pred CcEEEEEEcCCCCEEE-EeeCCCcEEEEeCC--CCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 317 EGITFIDSRGDGRYLI-SNGKDQAIKLWDIR--KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 317 ~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
.....++|+|+++.|+ +.+.++.|.+||+. +..... .+.+..+....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------------------------~~~~~~~~~~~- 198 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------------------------RRSVYKLEKEE- 198 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------------------------EEEEEECCGGG-
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------------------------cEEEEECCCCC-
Confidence 5668899999998765 45567889999874 211000 01111111111
Q ss_pred eEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEec-CCCCeEEEEe
Q 011179 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 459 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~~ 459 (491)
.....++++++|++.++....+.|.+||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus 199 -----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 199 -----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 011223566789888877778899999999999999888777789999998 8888554443
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2.2e-10 Score=103.78 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=160.7
Q ss_pred eeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
..+.++++.++++.+++...++.|.+|+.. ++..... .. .....+.++++.++++.+++...++
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE-VP--------------TPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-CS--------------STTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE-CC--------------CCCCcceeEEECCCCCEEEEecCCC
Confidence 368899999999977776678999999987 5543211 11 0112688999999998777766688
Q ss_pred eEEEEECCCCeeeE-EEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCcee-eEeccccCcEEEEEEcCC
Q 011179 250 CIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 327 (491)
.|..||.. ++... .+......+..+++. ++++++++...++.|..+|.. +... ..+......+..+++.++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-----GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-----SCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-----CCEEEccCCCCCCCceeEEECCC
Confidence 99999988 55432 222234678999996 778888877778899999874 2222 122334467889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEeccccc
Q 011179 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
++++++...++.|..+|... . . ..+........ ...++++
T Consensus 157 g~l~v~~~~~~~i~~~~~~g-~----------------------------------~-~~~~~~~~~~~----~~~i~~d 196 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTG-K----------------------------------L-EEYPLPTNAAA----PVGITSG 196 (300)
T ss_dssp SSEEEEETTTTEEEEECTTC-C----------------------------------E-EEEECSSTTCC----EEEEEEC
T ss_pred CCEEEEecCCCeEEEECCCC-c----------------------------------E-EEeeCCCCCCC----cceEEEC
Confidence 99777766678899998732 1 1 11111000011 1223456
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEe-eccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
++|++.++....+.|.+||. +++.... +..+...+.+++++++|+++++...++.|..|+..
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 68887777666788999998 5554332 33445678999999999977776667889999873
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=5.6e-12 Score=116.72 Aligned_cols=285 Identities=9% Similarity=-0.007 Sum_probs=169.4
Q ss_pred CceEEEEEcCCCCEEEEEE--cCCeEEEEECCCCeEEEEEe----ecCCCceeEEEEEECCCCCeEEEEEC-----CCeE
Q 011179 125 SRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV 193 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~--~dg~i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i 193 (491)
.....++++|+|+++++.. .++.++||.+.++. +.... ....+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5788999999999888864 23435566655553 22111 11123457999999999886665433 5789
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCeeeEEEeccC
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
.+||+.+++......+.... ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+..|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 99999988754443322110 0112246789999865555 4444 57899999999888766554442
Q ss_pred CCee-EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 270 SDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 270 ~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.... ...+. .++..+.+.+.++.++.|. ..+..|+|+|+++.|+++..++. ++|.+...
T Consensus 166 ~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~ 225 (343)
T 2qe8_A 166 GIAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSA 225 (343)
T ss_dssp TTSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHH
T ss_pred ccccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHH
Confidence 2111 12333 3455666666777765543 23567999999998888877663 44443220
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
..... .... .. + ...+..+ ++. .....++++++|+++++...++.|.+||..
T Consensus 226 ~~~~~-~~~~---------------~~-~----~~~~~~~-g~~------g~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 226 DLSNL-QLTD---------------AE-L----GSKIERY-SEK------PICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp HHTCT-TCCH---------------HH-H----HTTCEEE-EEC------CSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred HhcCC-CCCh---------------hh-h----hcceEec-ccC------CCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 00000 0000 00 0 0000000 000 011223567789999998889999999985
Q ss_pred CCcEEEeecc-CCCCeeeeEecCCCCeEEEEeCCCcEEEEc
Q 011179 429 SGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 429 ~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus 278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 6764333321 245688999999999888877666555554
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=6.9e-12 Score=115.60 Aligned_cols=270 Identities=9% Similarity=-0.078 Sum_probs=167.4
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE----------CCCeEEEEECCCCccccccccccccccc
Q 011179 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 147 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 216 (491)
+|.++|..+++.+..+..... + .+.++||++++.++. .++.|.+||..+++......+.....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 889999999988877665543 3 699999999998886 36889999999998766554321000
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC
Q 011179 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 292 (491)
+.. ......++++|||++++++.. +..|.+ +|..+ +..+... +. +.+.|.....+++.+.||
T Consensus 120 -~~~------g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 120 -FSV------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp -CCB------SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTT
T ss_pred -ccc------CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCC
Confidence 000 002345899999999998874 467888 88877 3444321 11 112234456667777889
Q ss_pred eEEEEecccccCC-Cceee----EeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeee
Q 011179 293 LCKVWDRRCLNVK-GKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 293 ~i~iwd~~~~~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
.+.+.|+...... ++... .+.-...+. . .+++..++..+. +.+.+.|+......
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~---------------- 244 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT---------------- 244 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----------------
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----------------
Confidence 8888888620000 11110 111122333 3 556666666666 89999998652110
Q ss_pred ecCCCCCccccCCCCceEEEEeCCc----eeEeeEEEEecccccCCCcEEEEEec-C--------CeEEEEECCCCcEEE
Q 011179 368 MDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH-D--------SCVYVYDLVSGEQVA 434 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~ 434 (491)
.+..+.... .............++|+++.++++.. . +.+.++|+.+++.+.
T Consensus 245 ----------------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~ 308 (368)
T 1mda_H 245 ----------------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp ----------------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred ----------------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence 000000000 00000000000246778888887644 2 356799999999998
Q ss_pred eeccCCCCeeeeEecCCCC-eEEEEe-CCCcEEEEcCCCCCCC
Q 011179 435 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 435 ~~~~h~~~v~~~~~sp~~~-~l~s~~-~Dg~v~iw~~~~~~~~ 475 (491)
.+.... ....++|+|||+ ++++.. .++.|.++|+.+.+..
T Consensus 309 ~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 309 PISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 887443 689999999998 566666 5999999999887543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.5e-12 Score=118.80 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeE--------EEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
+++.+++++...++++|+.++ +++|++..... ...... ..+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 789999999999999999884 66798654320 111011 12344 999999 99999998 789999999
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 277 (491)
+.+........ .|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|
T Consensus 113 v~sl~~~~~~~----------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVT----------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEE----------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred chhhhccCccc----------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 97654322111 12225777777654 38889999999999999877643 4568999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCce--eeEe------c---cccCcEEEEEEcCCCCEEEEe
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVL------M---GHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~s~ 334 (491)
+ ++| ++.|..||++++|+.. .... ...+ . +|...|.+|.|.+++.++++-
T Consensus 171 S-pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 171 T-NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp C-SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c-CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 8 666 6789999999999875 3332 3334 2 367889999999999888863
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=3.6e-12 Score=117.74 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=127.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------e-eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEe
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------L-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 298 (491)
++..+++++....+++|+.++ +.+|++.... . ......+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 578899999999999999886 6679875433 1 112224666 999999 67899888 889999999
Q ss_pred cccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcccc
Q 011179 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
++.. ........|...+.++.+.+. .++++..||.|.+||+....
T Consensus 113 v~sl----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----------------------------- 157 (388)
T 1xip_A 113 LEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----------------------------- 157 (388)
T ss_dssp SSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-----------------------------
T ss_pred chhh----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-----------------------------
Confidence 9833 334455567778888877654 38889999999999998622
Q ss_pred CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE--EEee------c---cCCCCeeeeE
Q 011179 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAAL------K---YHTSPVRDCS 447 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~~~ 447 (491)
... ......+.+|||+| ++.|..||.+++|+...++. ..++ . +|...|.++.
T Consensus 158 -----~~~----------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 158 -----TKQ----------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp -----EEE----------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred -----ccc----------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 111 11122344677788 67899999999999887775 5555 2 4788999999
Q ss_pred ecCCCCeEEE
Q 011179 448 WHPSQPMLVS 457 (491)
Q Consensus 448 ~sp~~~~l~s 457 (491)
|.+++.+|++
T Consensus 221 wl~~~~flv~ 230 (388)
T 1xip_A 221 ILSPQDFLAV 230 (388)
T ss_dssp ESSSSEEEEE
T ss_pred EecCCeEEEE
Confidence 9999988876
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.1e-10 Score=103.86 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 126 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
-.-+..|+|++. ++++...++.|..||..++... .. .. ...+.+++++|+++++++ . ++.|.+||.++++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~---~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TM---DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-EC---SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eC---CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 345788999654 5566667889999999887432 22 11 236899999999995544 4 578999999887654
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCee
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~h~~~v~ 273 (491)
.+...... .....+.+++++|+|+++++... .+.|+.++.. ++. ..+..+....+
T Consensus 87 ~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pn 152 (297)
T 3g4e_A 87 VLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISN 152 (297)
T ss_dssp EEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEE
T ss_pred EEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeecccccc
Confidence 33221110 01235889999999996655422 2345555543 333 33334445678
Q ss_pred EEEEecCCCCEE-EEEeCCCeEEEEecccccCCCc-----eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 274 TVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 274 ~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.++|+ ++++.| ++.+.++.|.+||+... .+. ....+..+......++++++|++.++....+.|..||..+
T Consensus 153 gi~~s-pdg~~lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 153 GLDWS-LDHKIFYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred ceEEc-CCCCEEEEecCCCCcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 99998 677655 55666889999987311 221 2223333445678899999998888887788899999876
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=8e-11 Score=110.32 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=156.1
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEECCCCCeEEEEEC--CCe
Q 011179 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~~~--d~~ 192 (491)
.+++||||++|+++. .++.|.++|..+++.+..+... ... ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888775 3678999999999877766543 100 112456899999999998874 578
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE----ec
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI----LA 267 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~----~~ 267 (491)
|.+.|+.+++......+.. . ....|++ +.+++.+.||.+.+.+..+++..... ..
T Consensus 202 VsVID~~t~kvv~~I~v~g------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp EEEEETTTTEEEEEEECCS------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEEECCCCeEEEEEEcCC------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 9999999988765443321 1 1222322 44555666777777776555443221 11
Q ss_pred cCCCe-eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec----------cccCcEEEEEEcCCCCEEEEeeC
Q 011179 268 HTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 268 h~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
...++ ..+.|. +++..++..+..+.+.+.|...... ..+..+. ........++++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 262 EDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp TTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCE--EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred CCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCce--EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 11111 234565 5666666667889999999852110 0001100 01112223688999887776542
Q ss_pred ----------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccc
Q 011179 337 ----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 337 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
++.|.++|+.+. +.+..+... ...+.+.+
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~ 377 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINV 377 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEE
T ss_pred ccccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEE
Confidence 357999999883 444444321 12455578
Q ss_pred cCCCc-EEEEEe-cCCeEEEEECCCCcEEEee
Q 011179 407 STGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 407 s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 436 (491)
+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999 888888 4899999999999999887
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=1.1e-09 Score=100.51 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=141.0
Q ss_pred EEEEEECCCCC-eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 172 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 172 v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.....|+|++. ++++...++.|..|+..+++.... .. ...+.+++|+++|+++++. .+ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~v~~i~~~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL-----------------PFMGSALAKISDSKQLIAS-DD-G 110 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC-----------------SSCEEEEEEEETTEEEEEE-TT-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC-----------------CCcceEEEEeCCCeEEEEE-CC-C
Confidence 45678999755 455555678999999987754321 11 0168899999999866654 44 4
Q ss_pred EEEEECCCCeeeEEEec----cCCCeeEEEEecCCCCEEEEEeCC----CeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 251 IYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
|.+||..+++....... ....+..+++. ++++++++...+ +...||.+. .++ +..+..+......+
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~----~g~-~~~~~~~~~~~~~i 184 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGK-VTKLFADISIPNSI 184 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTE-EEEEEEEESSEEEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe----CCc-EEEeeCCCcccCCe
Confidence 99999988875432211 12357889996 778876654421 233444443 122 22233334556789
Q ss_pred EEcCCCCEEEEe-eCCCcEEEEeCC--CC-CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 323 DSRGDGRYLISN-GKDQAIKLWDIR--KM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 323 ~~~~~~~~l~s~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
+|+|+++.|+.+ +.++.|.+||+. +. .... ...+..+..... .
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~~--~-- 231 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIKG--G-- 231 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSSS--E--
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCCC--C--
Confidence 999999877554 456889999986 32 1000 011111111110 0
Q ss_pred EEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEec-CCCCeEEEEe
Q 011179 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 459 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~~ 459 (491)
....+++++|++.++...++.|.+||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus 232 --p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 232 --MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp --EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred --CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 112345668887777767789999998 677777777677789999998 8887665443
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=6.2e-11 Score=107.80 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=143.2
Q ss_pred eEEEEEECCCCC-eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 011179 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg 249 (491)
......|+|+++ ++++...++.|..|+. +++...... +...+..++++++|+++++...++
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD-----------------ATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEE-----------------SCSCEEEEEECTTSCEEEEETTTT
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC-----------------CCCccceeeECCCCCEEEEECCCC
Confidence 356789999998 4556666789999987 444321111 112578899999999666655668
Q ss_pred eEEEEECCCCeeeEEEecc-----CCCeeEEEEecCCCCEEEE----EeC-------------CCeEEEEecccccCCCc
Q 011179 250 CIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYS----GSD-------------DNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~ 307 (491)
.|.+|+.. ++.. .+..+ ...+..+++. ++++++++ |.. .+.|..||.. .++
T Consensus 108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~----~g~ 180 (305)
T 3dr2_A 108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD----GSP 180 (305)
T ss_dssp EEEEECTT-SCEE-EEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS----SCC
T ss_pred EEEEECCC-CCEE-EEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC----CCc
Confidence 89999986 5432 22211 2346789996 78888876 332 2457777764 233
Q ss_pred eeeEeccccCcEEEEEEcCCCCEEEEeeCC------CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCC
Q 011179 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
... +. .......++|+|+++.|+.+... +.|.+|++.... .
T Consensus 181 ~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l------------------------------ 227 (305)
T 3dr2_A 181 LQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L------------------------------ 227 (305)
T ss_dssp CEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E------------------------------
T ss_pred EEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c------------------------------
Confidence 222 22 44566789999999988777665 689999886421 0
Q ss_pred CceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCC
Q 011179 382 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~D 461 (491)
.....+.... ......+.++++|++ .++..+ .|.+|+. .++.+..+..+. .+..++|+|+++.|+.++.+
T Consensus 228 -~~~~~~~~~~-----~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 228 -HDRRHFASVP-----DGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp -EEEEEEECCS-----SSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred -cCCeEEEECC-----CCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 0000000000 000112345668884 444444 4999998 677777776554 58999999999888888776
Q ss_pred CcEE
Q 011179 462 GDVV 465 (491)
Q Consensus 462 g~v~ 465 (491)
+..+
T Consensus 298 ~l~~ 301 (305)
T 3dr2_A 298 CLWM 301 (305)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5433
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=1.7e-10 Score=104.84 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=129.2
Q ss_pred ccccCCCCceEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEE
Q 011179 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 196 (491)
..+...........|+|+|+ +++++..++.|..|+.. +. ...... ....+..++++++|+++++...++.|.+|
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 33444455667899999998 56667678999999984 43 222222 22358899999999966665556789999
Q ss_pred ECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCCC
Q 011179 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLEAN 259 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~vwd~~~~ 259 (491)
+.+ ++......... + .....+.++++.++|+++++ |.. .+.|+.||..++
T Consensus 113 ~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp CTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred CCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 976 54332211110 0 00114667999999997775 332 356888888777
Q ss_pred eeeEEEeccCCCeeEEEEecCCCCEEEEEeCC------CeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEE
Q 011179 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 260 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 332 (491)
+..... .......++|+ ++++.|+.+... +.|.+|++..... .....+ .........+++.++|++.+
T Consensus 180 ~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEE--EEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred cEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 654333 44567889997 788877776655 7899999862110 001111 11123345688999998544
Q ss_pred EeeCCCcEEEEeCCC
Q 011179 333 SNGKDQAIKLWDIRK 347 (491)
Q Consensus 333 s~~~dg~i~iwd~~~ 347 (491)
+..+ .|.+|+...
T Consensus 255 -~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 255 -SSGT-GVCVFDSDG 267 (305)
T ss_dssp -CCSS-EEEEECTTS
T ss_pred -ecCC-cEEEECCCC
Confidence 4444 499998743
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=5.2e-11 Score=121.04 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=153.1
Q ss_pred CceeEEEEEECCCCCeEEEEEC-----CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEE
Q 011179 168 LRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 168 ~~~~v~~~~~sp~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l 242 (491)
+...+..++|||||++||.+.. ...|++||+.+++..... ... .....++|+ |++.|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~----------------~k~~~~~Ws-Dg~~l 188 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD----------------VKFSGISWL-GNEGF 188 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE----------------EESCCCEEE-TTTEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC----------------ceeccEEEe-CCCEE
Confidence 4457889999999999986542 247999999998753321 110 012467899 99999
Q ss_pred EEEeCCC-------------eEEEEECCCCee----eEEEec-cCCCeeEEEEecCCCCEEEEEeC----CCeEEEEecc
Q 011179 243 VAGSSDD-------------CIYVYDLEANKL----SLRILA-HTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRR 300 (491)
Q Consensus 243 ~~~~~dg-------------~i~vwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~ 300 (491)
+.++.+. .|++|++.++.. +..... |...+..+.|+ +++++|+.... ++.|.++|+.
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECC
Confidence 9988774 499999987653 222223 45567889998 77877654432 3589999986
Q ss_pred cccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CC---CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCcc
Q 011179 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
.. ......+..+....... ++++|..|+..+ .+ +.|..+|+.+...
T Consensus 268 ~~---~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------------------------- 317 (693)
T 3iuj_A 268 QE---NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------------------------- 317 (693)
T ss_dssp ST---TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--------------------------
T ss_pred CC---CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--------------------------
Confidence 22 12344555566665555 566666555443 33 5788888876321
Q ss_pred ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-CC--eEEEEECCCCcEEEeec-cCCCCeeeeEecCCC
Q 011179 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQ 452 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~ 452 (491)
.....+..+... .. .++++++.|+.... ++ .|++||+..+ ....+. ...+.+..+.++|++
T Consensus 318 ------~~~~~l~~~~~~--~~------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 318 ------AHWRDLIPERQQ--VL------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDD 382 (693)
T ss_dssp ------GGCEEEECCCSS--CE------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTC
T ss_pred ------cccEEEecCCCC--EE------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCC
Confidence 011222222211 11 34446777766655 44 6899998754 444443 344567888899998
Q ss_pred CeEEEEeCC----CcEEEEcCCCCC
Q 011179 453 PMLVSSSWD----GDVVRWEFPGNG 473 (491)
Q Consensus 453 ~~l~s~~~D----g~v~iw~~~~~~ 473 (491)
..|+....+ +.|+.||+.+++
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CEEEEEecCCCCCCEEEEEECCCCe
Confidence 866655544 789999987654
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=1.5e-09 Score=99.58 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=128.3
Q ss_pred eEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 127 AYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 127 i~~~~~s~dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
.-..+|+|++. ++++...++.|..||..+++.. ... . ...+.+++|+|+++++++. . ..|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~---~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-L---PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-C---SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-C---CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 45788999855 5556667889999999887432 221 1 2368999999999877654 3 459999998877543
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
+..... ......+.+++++|+|+++++... .+.|+.++ +++.. .+..+......++|+
T Consensus 124 ~~~~~~------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s- 187 (326)
T 2ghs_A 124 HAELES------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS- 187 (326)
T ss_dssp EECSST------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC-
T ss_pred EeeCCC------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc-
Confidence 321110 001136889999999996665432 25677777 45443 333344567889997
Q ss_pred CCCCEEE-EEeCCCeEEEEecc--cc-cCCC-ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 280 ESGHLIY-SGSDDNLCKVWDRR--CL-NVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 280 ~~~~~l~-s~~~dg~i~iwd~~--~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
++++.++ +.+.++.|.+||+. .. .... .....+.........+++.++|.+.++...++.|.+||..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 6777654 44567899999974 21 1111 1222232334556789999999888777677889999874
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=4.5e-09 Score=98.57 Aligned_cols=268 Identities=11% Similarity=0.035 Sum_probs=164.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCC------ceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 208 (491)
++..|++++.++.|..+|..+|+.+-+....... ...+... ...++..+++++.++.|..+|..+++......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3567888888999999999998766554332110 1122221 11245678888899999999999998654333
Q ss_pred cccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEecCCCC
Q 011179 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH 283 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~ 283 (491)
..... ...++ . .+..+++++.++.|+.+|..+++.+.......... ...... +.
T Consensus 131 ~~~~~------------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 131 VAGEA------------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp CSSCC------------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred CCCce------------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 22110 00011 1 14478888899999999999998876665332211 222332 35
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccC-------cEEEEEEcC--CCCEEEEeeCCCcEEEEeCCCCCCcccc
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-------GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 354 (491)
.++.++.++.+..+|.. +++.+........ .+..+...| .+..++.++.++.+..+|..+++
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~----- 260 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ----- 260 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----
Confidence 67788889999999987 5555544432110 000011111 24567778889999999998743
Q ss_pred cCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEE
Q 011179 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 434 (491)
.+........ . .+.. ++..|+.++.++.|+.+|..+++.+.
T Consensus 261 -----------------------------~~w~~~~~~~-~-------~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 261 -----------------------------IMWKRELGSV-N-------DFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp -----------------------------EEEEECCCCE-E-------EEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred -----------------------------EEeeccCCCC-C-------CceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 2222211110 0 0111 35678888889999999999999887
Q ss_pred eecc-CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 435 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 435 ~~~~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.... ....+..... .+..|+.++.+|.|+++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 7652 2223333444 345788888999999999887653
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=4.3e-10 Score=113.58 Aligned_cols=313 Identities=12% Similarity=0.109 Sum_probs=178.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... .+ ..++. ++..|++++.|+.|..+|..+|+.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55677788889999999999977666433221100 00 01111 3567888889999999999999876544
Q ss_pred ccc-cccccccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEecc--C---------
Q 011179 208 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAH--T--------- 269 (491)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~h--~--------- 269 (491)
... ........ ...++. .++ .+++++ .+|.|+.||..+++.+-++... .
T Consensus 148 ~~~~~~~~~~~~-------~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 148 DTRADHKRSYTI-------TGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp ECCSCTTSCCBC-------CSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred cCcCCCCCCccc-------cCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 332 10000000 000111 144 455554 3689999999999987666421 0
Q ss_pred --------------------CCeeEEEEecCCCCEEEEEeCCCe-------------------EEEEecccccCCCceee
Q 011179 270 --------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 270 --------------------~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~ 310 (491)
.....+++. ++..+++.++.++. |..+|.. +++.+.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W 289 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVW 289 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEE
T ss_pred ccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeE
Confidence 011256776 66788888887764 8999997 677666
Q ss_pred Eecc--cc-------CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCC--CC-Cc
Q 011179 311 VLMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP--PQ-AR 375 (491)
Q Consensus 311 ~~~~--~~-------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 375 (491)
.+.. |. .+........+|+ .++.++.+|.++++|..+++......... ..|....-... +. ..
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETTTTEEEECH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCccCCCcccch
Confidence 5543 21 1222223333565 78899999999999999876543322211 01111000000 00 00
Q ss_pred ccc--CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-----------------------------------
Q 011179 376 DLK--HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------------------------------- 418 (491)
Q Consensus 376 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------------------------------- 418 (491)
... .+.......+.+..... ....++++|+..++++...
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 443 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGA 443 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSH
T ss_pred hhccccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccc
Confidence 000 00000000000000000 0011244555555554321
Q ss_pred ----------CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 419 ----------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 419 ----------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
+|.|+.||+.+|+.+..+..+. ++..-.+...+.+++.++.||.|+.||..+++..
T Consensus 444 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 444 EGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp HHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4789999999999998887543 4455567778889999999999999999988754
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=8.1e-10 Score=111.31 Aligned_cols=310 Identities=13% Similarity=0.121 Sum_probs=181.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce--------eEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--------TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... ....+++ ++..|++++.|+.|..+|..+|+.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999977665443221100 0011222 4667888899999999999999876554
Q ss_pred ccc-cccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC---------
Q 011179 208 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD--------- 271 (491)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~--------- 271 (491)
... ....+... ...++ . .+..+++++. ++.|+.+|..+++.+-++......
T Consensus 155 ~~~~~~~~~~~~-------~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 155 NTFEGQKGSLTI-------TGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTTCCSSCBC-------CSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred cCCcCcCcCccc-------ccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 432 10000000 00011 1 1345566553 689999999999988766532211
Q ss_pred -----------------------eeEEEEecCCCCEEEEEeCCC-------------------eEEEEecccccCCCcee
Q 011179 272 -----------------------VNTVCFGDESGHLIYSGSDDN-------------------LCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 272 -----------------------v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~ 309 (491)
...+++. +++.+++.++.++ .|..+|.. +++.+
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~ 296 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK 296 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence 1346775 6677888887664 48888887 66666
Q ss_pred eEecc--cc-------CcEEEEEEcCCC---CEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccc
Q 011179 310 GVLMG--HL-------EGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 310 ~~~~~--~~-------~~i~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
..+.. |. .....+....+| ..++.++.+|.++++|..+++........... |... +. ..++.+
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~-~d--~~g~~~ 371 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASG-YD--KHGKPI 371 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEE-EC--TTSCEE
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC--cccc-cC--CCCcee
Confidence 55442 21 112223333467 68899999999999999987654332221100 0000 00 000000
Q ss_pred cC----CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-----------------------------------
Q 011179 378 KH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------------------------------- 418 (491)
Q Consensus 378 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------------------------------- 418 (491)
.. ..+.....+.+.... .....++++|++.++++...
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~----~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGA----HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCS----SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred eccccCcCCCccEECcCcccc----cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 00 000000000000000 00012355666666666533
Q ss_pred --------CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 419 --------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 419 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.|.|..||+.+++.+..+. +..++....+..++.+++.++.||.+++||..+++..
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999988876 3445666677778888999999999999999987653
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=7.9e-11 Score=108.97 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=146.2
Q ss_pred eEEEEEECCCCCeEEEEEC--CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-
Q 011179 171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 247 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~- 247 (491)
.+..++++|+|+.+++... ++.++||.+.+++........ ....+|-..+..++++++++++++-..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS----------GNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC----------SSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc----------cCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 6889999999998887642 343555555444432111100 011234558999999999875555433
Q ss_pred ----CCeEEEEECCCCeeeEEEecc------CCCeeEEEEecCCCCEEEEEe---CCCeEEEEecccccCCCceeeEecc
Q 011179 248 ----DDCIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMG 314 (491)
Q Consensus 248 ----dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 314 (491)
++.|.+||+.+++.+..+... ...+..+++.+.++..+++.. .++.|.+||+. .++....+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~ 163 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG 163 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence 578999999999877666432 245689999744455555655 67899999986 5555554544
Q ss_pred ccCcEE-EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCce
Q 011179 315 HLEGIT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 315 ~~~~i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
|..... ...+.++|..+.+.+.++.++.|...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------------------------------------- 196 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------------------------------------- 196 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence 322110 13344466666666777776555321
Q ss_pred eEeeEEEEecccccCCCcEEEEEecCC-eEEEEECC---CCc-----EEE--eeccCCCCeeeeEecCCCCeEEEEeCCC
Q 011179 394 LRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLV---SGE-----QVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~~~~sp~~~~l~s~~~Dg 462 (491)
...++++|+++.|+.+..++ .++.++.. .+. ... ...++.+....++++++|.++++...++
T Consensus 197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence 12346778999888887766 56655532 111 000 1113445677899999999999988899
Q ss_pred cEEEEcC
Q 011179 463 DVVRWEF 469 (491)
Q Consensus 463 ~v~iw~~ 469 (491)
.|.+|+.
T Consensus 270 ~V~~~d~ 276 (343)
T 2qe8_A 270 AIGVITS 276 (343)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 9999998
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=117.15 Aligned_cols=203 Identities=14% Similarity=0.185 Sum_probs=113.3
Q ss_pred CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011179 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
++..+++++.|+.|+.||..+|+....... . .+.+..+..++..+++++.||.|+.||..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------------CSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------------CceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 577899999999999999999987654432 1 2223334456777888889999999999988
Q ss_pred eeeEEEeccCC-Cee-EEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 260 KLSLRILAHTS-DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 260 ~~~~~~~~h~~-~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
+.+..+..+.. .+. +..+ ..+..+++++.|+.++.||.. +++.+..+..+. ...++|++..+++++.|
T Consensus 70 ~~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 70 EGLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEE
T ss_pred ceeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 87655543211 110 1111 134577888889999999997 666666555443 23456788899999999
Q ss_pred CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCC---cEEE
Q 011179 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ---KYIY 414 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~ 414 (491)
+.|+.||.++++.... +... ....+.++.+. ..++
T Consensus 140 g~v~a~d~~tG~~~W~----------------------------------~~~~--------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 140 YTITMYDTKTRELRWN----------------------------------ATYF--------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp EEEECCCSSSSSCCCE----------------------------------EEEE--------EECCBCCCCCTTCCCCEE
T ss_pred CEEEEEECCCCCEEEe----------------------------------Eecc--------cccCccccCCccccceEE
Confidence 9999999987542211 1100 01223343332 4577
Q ss_pred EEecCCeEEEEECCCCcEEEeeccCCCCee-eeEecCCCC
Q 011179 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQP 453 (491)
Q Consensus 415 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~sp~~~ 453 (491)
+++.||.|+.||..+|+.+..+.. ..++. ...+++++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 788999999999999999888763 34443 345666664
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=4.7e-08 Score=91.56 Aligned_cols=262 Identities=13% Similarity=0.078 Sum_probs=162.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 214 (491)
++..+++++.++.|..+|..+|+.+-+.......... ... .+..+++++.++.|..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~---p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR---PVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC---CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC---CEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4567888889999999999999766554332211111 111 24577888889999999999988654443221100
Q ss_pred cccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC----------e-eEEEEecCCCC
Q 011179 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH 283 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~ 283 (491)
. ..+...+ ... +..+++++.++.|..+|..+++.+......... + ..... .+.
T Consensus 177 ~-------~~~~~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~ 240 (376)
T 3q7m_A 177 S-------LRGESAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG 240 (376)
T ss_dssp ---------CCCCCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred e-------ecCCCCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence 0 0000111 111 346888888999999999999887665422110 1 11112 246
Q ss_pred EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcccee
Q 011179 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.++.++.+..+|.. .++.+.... ......+... +..++.++.++.|..+|..+.+.
T Consensus 241 ~v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~------------- 299 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVT------------- 299 (376)
T ss_dssp EEEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEEE--TTEEEEEETTCCEEEEETTTCCE-------------
T ss_pred EEEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceEE--CCEEEEEcCCCeEEEEECCCCcE-------------
Confidence 77888889999999987 566554443 2334444443 55788888899999999987432
Q ss_pred eeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCe
Q 011179 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
+-....... . ....+.. .+..|++++.+|.|+++|..+|+.+.........+
T Consensus 300 ---------------------~w~~~~~~~-~----~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 300 ---------------------LWTQSDLLH-R----LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp ---------------------EEEECTTTT-S----CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred ---------------------EEeecccCC-C----cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 111110000 0 0001111 24678889999999999999999988776544444
Q ss_pred ee-eEecCCCCeEEEEeCCCcEEEEc
Q 011179 444 RD-CSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 444 ~~-~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
.. ... .+..|+.++.||.|+.|+
T Consensus 352 ~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 33 222 245788888999999986
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2e-09 Score=108.40 Aligned_cols=326 Identities=12% Similarity=0.098 Sum_probs=172.5
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeec-CCC-ceeEEEEEECCCCCeEEEEEC------CCeEEEEECCCCccccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-RWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSGTMESL 206 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~v~~~~~sp~~~~l~~~~~------d~~i~iw~~~~~~~~~~ 206 (491)
++..|++++.|+.|..+|..+|+.+-+.... ... ...+..--.. .+..+++++. ++.|+.+|..+|+....
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4567888889999999999999777665433 100 0111110000 2344555543 68999999999987654
Q ss_pred cccccccc--cc----------cccccCC----CCceecEEEEEEcCCCCEEEEEeCCC-------------------eE
Q 011179 207 ANVTEIHD--GL----------DFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD-------------------CI 251 (491)
Q Consensus 207 ~~~~~~~~--~~----------~~~~~~~----~~h~~~i~~~~~s~~~~~l~~~~~dg-------------------~i 251 (491)
........ .+ .+..... .+.......+++++++..++++..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 43321110 00 0000000 01111223578899888888887664 59
Q ss_pred EEEECCCCeeeEEEec--cC-------CCeeEEEEecCCC---CEEEEEeCCCeEEEEecccccCCCceeeEecccc---
Q 011179 252 YVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--- 316 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 316 (491)
..+|..+++.+-.+.. |. .....+... .++ ..++.++.+|.++++|.. +++.+.......
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVNW 360 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEeccccccccCc
Confidence 9999999998776653 21 112222332 355 688999999999999997 555554432110
Q ss_pred --------CcE------------------------EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCccc-ccCCCcccee
Q 011179 317 --------EGI------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS-CNLGFRSYEW 363 (491)
Q Consensus 317 --------~~i------------------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~ 363 (491)
.++ ..++++|++.++++...+-...++.......... ..........
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 001 1467888888888776554444443320000000 0000000000
Q ss_pred ee--eeecCCCCCccccCCCCceEEEEeCCcee-EeeEEE---EecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec
Q 011179 364 DY--RWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 364 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 437 (491)
.. ........ .+....+..+...... ...... .+...++.++.++++++.||.+++||..+|+.+..+.
T Consensus 441 ~~g~~~~~~~~~-----~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 441 NTAKFFNAEPPK-----SKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp CCCEEECSSCCC-----SCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccCC-----CCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 00 00000000 0000112222211100 000000 1122344467888999999999999999999999887
Q ss_pred cCC-CCeeeeEecCCCC-eEEEEeC----------------CCcEEEEcCCC
Q 011179 438 YHT-SPVRDCSWHPSQP-MLVSSSW----------------DGDVVRWEFPG 471 (491)
Q Consensus 438 ~h~-~~v~~~~~sp~~~-~l~s~~~----------------Dg~v~iw~~~~ 471 (491)
... ....-+.|.++|+ ++++.+. .+.+..|.+..
T Consensus 516 ~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 516 TGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 433 3334566778887 4444332 36788888874
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1.5e-09 Score=109.71 Aligned_cols=309 Identities=11% Similarity=0.028 Sum_probs=163.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC---CCCeEEEEE------CCCeEEEEECCCCcccc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS------MSPIVHIVDVGSGTMES 205 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~------~d~~i~iw~~~~~~~~~ 205 (491)
++..|++++.|+.|..+|..+|+.+-+........ ....+..+| ++. +++++ .++.|..||..+|+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999997776554320100 001111222 444 44443 36899999999998764
Q ss_pred ccccccccccccc-------cccCCC--------CceecEEEEEEcCCCCEEEEEeCCCe-------------------E
Q 011179 206 LANVTEIHDGLDF-------SAADDG--------GYSFGIFSLKFSTDGRELVAGSSDDC-------------------I 251 (491)
Q Consensus 206 ~~~~~~~~~~~~~-------~~~~~~--------~h~~~i~~~~~s~~~~~l~~~~~dg~-------------------i 251 (491)
............+ ....-. ++......++++|++..+++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 4332100000000 000000 11111235788898889999888764 9
Q ss_pred EEEECCCCeeeEEEec--cC-------CCeeEEEEecCCCC---EEEEEeCCCeEEEEecccccCCCceeeEeccc----
Q 011179 252 YVYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---- 315 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---- 315 (491)
..+|..+++.+-.+.. |. ..+...... .+++ .++.++.+|.++++|.+ +++.+......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999998877653 22 111122221 2444 78899999999999987 55554221100
Q ss_pred ------------------------cC-----------cEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCcc
Q 011179 316 ------------------------LE-----------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 316 ------------------------~~-----------~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
.. .-..++++|+..++++...+....++...... ..........
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-KRNPFKSMYQ 431 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC-CCCSCTTSCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc-cccccccccc
Confidence 00 01126788888888887766555555433210 0000000000
Q ss_pred ceeeeeeecCC---------C-CCcc--ccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC
Q 011179 361 YEWDYRWMDYP---------P-QARD--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 361 ~~~~~~~~~~~---------~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 428 (491)
.......+... + .+.. +....++.+-.+..+.. .+...++..+.++++|+.||.|+.||..
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-------~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-------FNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-------CCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-------ccCccceECCCEEEEECCCCcEEEEECC
Confidence 00000000000 0 0000 00111222222221110 0111233467889999999999999999
Q ss_pred CCcEEEeeccCCCC-eeeeEecCCCC-eEEEE
Q 011179 429 SGEQVAALKYHTSP-VRDCSWHPSQP-MLVSS 458 (491)
Q Consensus 429 ~~~~~~~~~~h~~~-v~~~~~sp~~~-~l~s~ 458 (491)
+|+.+..++...+. ..-+.|..+|+ ++++.
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 99999888744332 34577788888 44444
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=1.3e-08 Score=94.16 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=143.5
Q ss_pred CCCCeEEEEE-CCCeEEEEECCCC----ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 011179 179 PDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (491)
Q Consensus 179 p~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----- 248 (491)
+++++|++.+ .++.|.++|+.+. +........+..... + ......+..+|+| .++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------G-YSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------C-EEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------C-CCcccceeECCCe-EEEEcCCCcCCCC
Confidence 7888777654 5788999999754 222222101110000 0 0135567888999 66666555
Q ss_pred -CeEEEEECCCCeeeEEEeccCC---CeeEEEEecCCCCEEEEEe-------------------CCCeEEEEecccccCC
Q 011179 249 -DCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGS-------------------DDNLCKVWDRRCLNVK 305 (491)
Q Consensus 249 -g~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~ 305 (491)
|.|.++|.++.+.+.++..... .-..+.|+ ++++.+++.. .+..|.+||+. .
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~----~ 237 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR----K 237 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----T
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----C
Confidence 7899999999999888863222 23457787 7788888874 36899999997 5
Q ss_pred CceeeEeccc-c-CcEEEEEE--cCCCCEEEEee------CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCc
Q 011179 306 GKPAGVLMGH-L-EGITFIDS--RGDGRYLISNG------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 306 ~~~~~~~~~~-~-~~i~~~~~--~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
.+.+..+... . .....+.| +|+++++.+++ .+++|.+|...... |
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------------~------------ 292 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------------W------------ 292 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------------E------------
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------------e------------
Confidence 5555555432 1 23344545 99999888776 45678877764311 0
Q ss_pred cccCCCCceEEEE--eCCceeE----------eeEEEEecccccCCCcEEEEEec-CCeEEEEECCC---CcEEEeeccC
Q 011179 376 DLKHPCDQSVATY--KGHSVLR----------TLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS---GEQVAALKYH 439 (491)
Q Consensus 376 ~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~h 439 (491)
.....+ ....... ..-.....+.+|+||++|+++.. .+.|.+||+.. .+.+..+...
T Consensus 293 -------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 293 -------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp -------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred -------eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 000000 0000000 00011233357889999998887 67999999853 3455555421
Q ss_pred C--------------CCeeeeEecCCCCeEEEEe
Q 011179 440 T--------------SPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 440 ~--------------~~v~~~~~sp~~~~l~s~~ 459 (491)
. +.-..++++|||++|+++.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 1358899999999888887
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=1.5e-10 Score=106.76 Aligned_cols=249 Identities=10% Similarity=0.046 Sum_probs=150.2
Q ss_pred EEEEcCCCCEEEEEE----------cCCeEEEEECCCCeEEEEEeecCCCc----eeEEEEEECCCCCeEEEEEC--CCe
Q 011179 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLR----WTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~--d~~ 192 (491)
.+.|+|||++|+++. .++.|.+||+.+++.+..+......+ .....++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999988886 36889999999998887765431100 12456899999999998875 467
Q ss_pred EEE--EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEE
Q 011179 193 VHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-----NKLSLR 264 (491)
Q Consensus 193 i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~-----~~~~~~ 264 (491)
|.+ +|..+ . ....... . +.+.|++ ..+++.+.||.+.+.|+.+ ++....
T Consensus 149 v~V~~iD~~t--v-~~i~v~~------------------~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 149 AGLSVPGASD--D-QLTKSAS------------------C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp EEEEETTTEE--E-EEEECSS------------------C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred EEEEEEchhh--c-eEEECCC------------------c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 888 88876 1 1111100 0 1122333 2445556677777788876 333211
Q ss_pred ----EeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc----------ccCcEEEEEEcCCCCE
Q 011179 265 ----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRY 330 (491)
Q Consensus 265 ----~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~ 330 (491)
+.-...+. . . +++..++..+. +.+.+.|.... ..+.+..+.- .......+.++|+++.
T Consensus 206 ~t~~i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 206 CTGAQNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp SCTTSCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeeeeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 11112232 3 3 34455555555 89999998521 1111111110 0111122679999998
Q ss_pred EEEeeC---------CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 331 LISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 331 l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
++++.. ++.+.++|+.+.+ .+..+.... ..
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg~-------~p 316 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNGH-------DS 316 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEEE-------EE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECCC-------Cc
Confidence 876533 2356799998843 333222111 23
Q ss_pred ecccccCCCcE-EEEEe-cCCeEEEEECCCCcEEEeeccCCCCeeeeEecC
Q 011179 402 FSPVYSTGQKY-IYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 402 ~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 450 (491)
..+.++|||+. +++.. .++.|.++|+.+++.+.++.... ....+++.+
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 44567789984 55555 48999999999999999997554 345666654
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.20 E-value=2.6e-09 Score=102.39 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=175.5
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeecCCC------------------------------------ceeEEEEEECC---
Q 011179 139 FVAGFQASQIRIYDVERGWKIQKDILAKSL------------------------------------RWTVTDTSLSP--- 179 (491)
Q Consensus 139 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------------------------~~~v~~~~~sp--- 179 (491)
+.+|+..|.++|+-+.+++.+..+...... .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 667889999999999888776664322100 01111133333
Q ss_pred --CCCeEEEEEC-CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE-c-CCCCEEEEEe--------
Q 011179 180 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-S-TDGRELVAGS-------- 246 (491)
Q Consensus 180 --~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s-~~~~~l~~~~-------- 246 (491)
||+++.+... ++.|.+.|+++.++..+..++... .+..+++ + |+++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~---------------~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC---------------CCcceeeeecCCCcEEEEecccccccCC
Confidence 7888877665 457999999998876655443211 4677887 5 8999998885
Q ss_pred ----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC------------------------
Q 011179 247 ----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------------------------ 292 (491)
Q Consensus 247 ----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------------------------ 292 (491)
.++.+.+.|.++.+...++.--. ....++++ ++++++++.+.+.
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 24579999999999888776323 45667786 6788888887553
Q ss_pred --------------eEEEEecccccCCCce-eeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccccC
Q 011179 293 --------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 293 --------------~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 356 (491)
.|.+.|.+.. .+.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+......-..
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGG--GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred eeEeccCCCeeEECcEEEEeCccc--CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 2444454411 0122 222221 22345789999999877665 578899999986321000000
Q ss_pred CCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC-------
Q 011179 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------- 429 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------- 429 (491)
. +....+....... ..+..+|+|+|....+...|++|.+||+.+
T Consensus 318 ~----------------------~~~~v~~~v~vG~-------gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g 368 (595)
T 1fwx_A 318 D----------------------PRSAVVAEPELGL-------GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG 368 (595)
T ss_dssp C----------------------GGGGEEECCBCCS-------CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT
T ss_pred C----------------------cccceEEEcCCCC-------CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc
Confidence 0 0001111111111 123336788994444555699999999977
Q ss_pred ---CcEEEeeccCCCCe-----eeeEecCCCCeEEEEeC---CCcE----------EEEcCCC
Q 011179 430 ---GEQVAALKYHTSPV-----RDCSWHPSQPMLVSSSW---DGDV----------VRWEFPG 471 (491)
Q Consensus 430 ---~~~~~~~~~h~~~v-----~~~~~sp~~~~l~s~~~---Dg~v----------~iw~~~~ 471 (491)
.+.+.++..|-.+- .++.++|||++|+++.. |+.+ .++|+.+
T Consensus 369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 55677776654432 34567899999998743 5432 7788844
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.1e-08 Score=94.61 Aligned_cols=200 Identities=14% Similarity=0.039 Sum_probs=129.4
Q ss_pred EEc--CCCCEEEE-EEcCCeEEEEECCCC----eEEEEEe---ec-CCCceeEEEEEECCCCCeEEEEECC------CeE
Q 011179 131 QFS--ADGSLFVA-GFQASQIRIYDVERG----WKIQKDI---LA-KSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (491)
Q Consensus 131 ~~s--~dg~~la~-~~~dg~i~iwd~~~~----~~~~~~~---~~-~~~~~~v~~~~~sp~~~~l~~~~~d------~~i 193 (491)
.++ +++++|++ +..++.|.|+|+.+. +....+. .. .........+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 447 88888775 456788999999754 3333221 00 1111245677889999 66665544 789
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------CCCeEEEE
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY 254 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-------------------~dg~i~vw 254 (491)
.++|.++.+............. --..+.|+|+++.+++.. ...+|.+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-------------~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-------------LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-------------CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCcc-------------ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 9999999887766553322111 233578899999888874 36889999
Q ss_pred ECCCCeeeEEEecc--CCCeeEEEE--ecCCCCEEEEEe------CCCeEEEEecccccCCCceeeEe--cc--------
Q 011179 255 DLEANKLSLRILAH--TSDVNTVCF--GDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGVL--MG-------- 314 (491)
Q Consensus 255 d~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~--~~-------- 314 (491)
|+.+++.+.++... ......+.| + ++++++++++ .+++|.+|..... .......+ ..
T Consensus 234 D~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCC
T ss_pred ECCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCcccccccc
Confidence 99998887777542 123455655 6 7777777666 5668877665411 11111110 00
Q ss_pred --------ccCcEEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 011179 315 --------HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 315 --------~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 347 (491)
-......|.+++||++|.++.. .+.|.+||+..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0234678899999999887665 67899999864
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=3.8e-09 Score=97.04 Aligned_cols=301 Identities=14% Similarity=0.118 Sum_probs=170.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccc
Q 011179 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~ 206 (491)
..+..+..+|. |.+++.++.|..|| .+++..... ......+.++...+++. |.+++.+ |..+|. +++....
T Consensus 22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG
T ss_pred ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE
Confidence 34455666665 66666788899999 777554322 22333567778877776 4444444 888885 5544332
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEE
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 286 (491)
...... ......+. +..|.+++.++.|..+|.. ++.......+...+.++... +++. ++
T Consensus 93 ~~~~~~----------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~ 151 (330)
T 3hxj_A 93 FDTKKA----------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IY 151 (330)
T ss_dssp SCC---------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EE
T ss_pred EECCCC----------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EE
Confidence 221110 11112222 4468888889999999998 77666665555556666663 4555 66
Q ss_pred EEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeee
Q 011179 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 287 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
.++.++.|..+|.. +.....+......+.++...+++.+++.. +.|..+| .+........... ..+.
T Consensus 152 vgt~~~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~----~~~~ 218 (330)
T 3hxj_A 152 VGSNDNYLYAINPD-----GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY----WTVT 218 (330)
T ss_dssp EECTTSEEEEECTT-----SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS----CCCS
T ss_pred EEcCCCEEEEECCC-----CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC----ccee
Confidence 67888999999974 33444444444556677777788755544 7789998 4433222211110 0011
Q ss_pred eecCCCCCccccCCCCceEEEEeCCceeEeeE----EEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCC
Q 011179 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 442 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (491)
.+...+++.......+..+..+.......... ....++.+.+++ .|..++.+|.|..+|. +++.+..+......
T Consensus 219 ~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~ 296 (330)
T 3hxj_A 219 RPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWI 296 (330)
T ss_dssp CCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCC
T ss_pred ceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCcc
Confidence 11122222222222223333332211110000 001123333344 5777888889999996 78877777655667
Q ss_pred eeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 443 v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+.++...+++. |..++.+|.+++.......
T Consensus 297 ~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 297 IATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 88888878876 5568899999998866543
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=115.26 Aligned_cols=183 Identities=12% Similarity=0.038 Sum_probs=107.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccC
Q 011179 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++..+++++.||.|+.||..+++.+-++.. +.+.+..+. .++.++++++.||.|+.||.. +++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 567899999999999999999998877765 455555454 556678888899999999987 4555444432211
Q ss_pred c-EE-EEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE
Q 011179 318 G-IT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 ~-i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
. +. +..+. .+..+++++.++.|+.||..+++.. ..+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~----------------------------------w~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ----------------------------------QTLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEE----------------------------------EEecCCCc--
Confidence 1 10 00111 3456778888999999999885432 22221110
Q ss_pred eeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCC---CeEEEEeCCCcEEEEcCCCC
Q 011179 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~~~Dg~v~iw~~~~~ 472 (491)
..++|++..+++++.|+.|+.||..+|+.+..+..+. ....+++++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1223467889999999999999999998876654221 2334444432 46777889999999999877
Q ss_pred CC
Q 011179 473 GE 474 (491)
Q Consensus 473 ~~ 474 (491)
+.
T Consensus 194 ~~ 195 (369)
T 2hz6_A 194 DV 195 (369)
T ss_dssp CE
T ss_pred cE
Confidence 54
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=8.6e-08 Score=92.05 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=157.2
Q ss_pred CCCCEEEEEEc-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEE-C-CCCCeEEEEE------------------CCCe
Q 011179 134 ADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYAS------------------MSPI 192 (491)
Q Consensus 134 ~dg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~~------------------~d~~ 192 (491)
+||++|.+... ++.|.+.|+.+.+....+....+. .+..+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887665 567999999998766644333222 4778887 5 9999998885 2457
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----------------------
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----------------------- 249 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg----------------------- 249 (491)
+.++|.++.+......+... ...++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg~-----------------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN-----------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC-----------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred EEEEECCCCeEEEEEEeCCC-----------------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 99999998766554443221 22367888888888877543
Q ss_pred ---------------eEEEEECCC--Cee-eEEEeccCCCeeEEEEecCCCCEEEEEe-CCCeEEEEecccccC------
Q 011179 250 ---------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNV------ 304 (491)
Q Consensus 250 ---------------~i~vwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------ 304 (491)
.|.|.|..+ ++. +..+.. .....++.++ |+++++++++ .+.+|.++|+.....
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 377777776 444 344432 3456788998 7777665554 678999999973210
Q ss_pred --CCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCC
Q 011179 305 --KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (491)
Q Consensus 305 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
....+.... -......++|+|+|...++.-.|++|.+||+.+......- ....
T Consensus 318 ~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g------------------------~~~~ 372 (595)
T 1fwx_A 318 DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG------------------------EKVD 372 (595)
T ss_dssp CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT------------------------CSCC
T ss_pred CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc------------------------cccc
Confidence 001222222 2345678999999954556677999999998651100000 0002
Q ss_pred ceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec---CCe----------EEEEECCCCc
Q 011179 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSC----------VYVYDLVSGE 431 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~----------i~iwd~~~~~ 431 (491)
+.+..+..+..... .........+|||++|++.+. |.. -.++|+..++
T Consensus 373 ~vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 44555555432111 122234468899999999865 332 2889996544
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=1.8e-06 Score=76.48 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=147.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~ 210 (491)
|.+|..+.. +.|+.++++..... ..... .....+..++|++++..|..+. ..+.|..++..++.......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-- 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-- 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--
Confidence 345665553 47888888765211 01111 1122578999999776666555 46799999987654322110
Q ss_pred cccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe
Q 011179 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 289 (491)
. .......+++++++..|+.+ ...+.|.++++..................+++.+.++.++++..
T Consensus 76 ---~-----------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 76 ---Q-----------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp ---T-----------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred ---C-----------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 0 00157789999976655555 45678999998754332222222246789999733444444443
Q ss_pred C--CCeEEEEecccccCCCceeeEec-cccCcEEEEEEcCCCCEEEE-eeCCCcEEEEeCCCCCCcccccCCCccceeee
Q 011179 290 D--DNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 290 ~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
. .+.|..+++. +.....+. ........+++++++..|+. ....+.|.++|+....
T Consensus 142 ~~~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------------- 200 (267)
T 1npe_A 142 NRDNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------------- 200 (267)
T ss_dssp CSSSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----------------
T ss_pred CCCCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----------------
Confidence 3 4688888874 22222221 22345788999998766654 4456789999986411
Q ss_pred eeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEEEECCCCcEEEeeccCC-CCe
Q 011179 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT-SPV 443 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~-~~v 443 (491)
......+.... ..++. ++..|+.+. ..+.|.++|..+++.+..+.... ...
T Consensus 201 ------------------~~~~~~~~~~P-------~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p 253 (267)
T 1npe_A 201 ------------------RRKVLEGLQYP-------FAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253 (267)
T ss_dssp ------------------EEEEEECCCSE-------EEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred ------------------eEEEecCCCCc-------eEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccccccc
Confidence 11111111100 11111 334455444 56899999999999888886433 247
Q ss_pred eeeEecCCCC
Q 011179 444 RDCSWHPSQP 453 (491)
Q Consensus 444 ~~~~~sp~~~ 453 (491)
..+++.|++.
T Consensus 254 ~gi~~~~~~~ 263 (267)
T 1npe_A 254 YGITIALSQC 263 (267)
T ss_dssp CCEEEECSCC
T ss_pred ceeeecCccC
Confidence 8888888764
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=2.7e-07 Score=80.29 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCEEEEEEc--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEE-EECCCeEEEEECCCCc
Q 011179 126 RAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~iw~~~~~~ 202 (491)
....++|+|||.+.++.+. ++.|+++|+.+++.+......... ....+++. ++.|.. .-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~--fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY--FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--CEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--ceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 3578999999755555443 579999999999877765543321 12344554 445544 4457899999999887
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF 277 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~ 277 (491)
........ ... ...+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|
T Consensus 98 v~~~i~~g-~~~-----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 98 NIKNFTHQ-MKD-----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EEEEEECC-SSS-----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECC-CCC-----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 75544322 011 12355678877777788999999999998887776321 24678888
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc-------------cCcEEEEEEcCCCCEE-EEeeCCCcEEEE
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYL-ISNGKDQAIKLW 343 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l-~s~~~dg~i~iw 343 (491)
. ++.+++....++.|.+.|.. +++.+..+.-. ......|+|+|+++.+ +++...+.+...
T Consensus 160 ~--dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 160 I--NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp E--TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred E--CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 6 56666666568899999998 66666655421 1356899999998654 556677889888
Q ss_pred eCCCC
Q 011179 344 DIRKM 348 (491)
Q Consensus 344 d~~~~ 348 (491)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 88663
No 240
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.99 E-value=1.9e-08 Score=101.55 Aligned_cols=274 Identities=10% Similarity=0.022 Sum_probs=148.2
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEE
Q 011179 129 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 195 (491)
Q Consensus 129 ~~~~s~-dg~~la~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i 195 (491)
.+++.| +|++++.|+.+. .+.+||..++.-.........+.....++++.++++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 888888887543 5889999887322111111112112334677889999999884 458999
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCeeeEEE----
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLSLRI---- 265 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~---- 265 (491)
||..+++......+.... .-.+++..++++.++.|+ .+ ..+.+||..+++....-
T Consensus 270 yd~~t~~W~~~~~~~~~R---------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred ecCcCCceeECCCCCccc---------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 999887665443222110 112455667999999988 34 56999999887754320
Q ss_pred eccCCCeeEEEEecCCCCEEEEEeCCC---------eEEEEecccccCCCceeeEecccc---------CcEEEEEEc-C
Q 011179 266 LAHTSDVNTVCFGDESGHLIYSGSDDN---------LCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSR-G 326 (491)
Q Consensus 266 ~~h~~~v~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~~-~ 326 (491)
......-....+. .++.+++.|+.+| .+..||.. ..........+. ..-.++.+. .
T Consensus 335 ~p~~~~~~~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~----~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 335 NPMLTADKQGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTS----GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp GGGCCCCTTGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECS----TTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred cccccccccceee-cCCceEEEECCCCcEEEecCccceeeeecC----CcceeecCCccccccccCCCCCCCceEeccCC
Confidence 0000000001111 3445555555443 56778875 222222111111 122344443 3
Q ss_pred CCCEEEEeeCCC-----------cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEe-CCcee
Q 011179 327 DGRYLISNGKDQ-----------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVL 394 (491)
Q Consensus 327 ~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 394 (491)
++++++.|+.++ .|.+||..+.. -.... .....
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-----------------------------------W~~~~~~~mp~ 454 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-----------------------------------NTVFASNGLYF 454 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----------------------------------EEEECTTCCSS
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----------------------------------eeEEccCCCCC
Confidence 677888887542 45566654421 00010 00000
Q ss_pred EeeEEEEecccccCCCcEEEEEecC-----------CeEEEEECCCCcEEE--eeccCCCCeeeeEecCCCCeEEEEeC
Q 011179 395 RTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~~~ 460 (491)
. +.....+..|++++++.|+.+ ..+.+||..+.+-.. .+...........+.|++++++.|+.
T Consensus 455 ~---R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 455 A---RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp C---CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred C---cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 0 000111233588999988764 468999987765332 12212222234556799999999985
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=4.6e-07 Score=91.22 Aligned_cols=311 Identities=13% Similarity=0.150 Sum_probs=173.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEECCCCCeEEEEECCCeEEEEECCCCcccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... .+ ..+++ .+..+++++.|+.|..+|..+|+.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45677788899999999999977665433221100 00 01122 3567888888999999999999876554
Q ss_pred ccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccC------------
Q 011179 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT------------ 269 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~------------ 269 (491)
........... ...++. . ++ .++++.. +|.|+.+|..+++.+-++....
T Consensus 144 ~~~~~~~~~~~-------~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 144 QTTDPAKPYSI-------TGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp ECSCTTSSCBC-------CSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred ccCCCCCccee-------cCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 33211100000 000111 1 34 4555543 5899999999999887664210
Q ss_pred -------------------CCeeEEEEecCCCCEEEEEeCCCe-------------------EEEEecccccCCCceeeE
Q 011179 270 -------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 270 -------------------~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 311 (491)
.....+++. +...+++.++.++. |..+|.. +++.+..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~ 285 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWH 285 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEE
T ss_pred ccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeE
Confidence 011236775 66678888877663 8888987 6666655
Q ss_pred ecc--cc-------CcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 312 LMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 312 ~~~--~~-------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
+.. |. .+.....+..+|+ .++.++.+|.++++|..+++......... ..|....-. .....+..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~--~~g~p~~~ 361 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDL--ATGRPVEA 361 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECT--TTCCEEEC
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--ccccccccc--ccCCcccc
Confidence 543 21 2333333334665 68899999999999999876543322111 011110000 00000000
Q ss_pred C----CCceEEEEeCCceeEeeEEEEecccccCCCcEEEE------------------------------------EecC
Q 011179 380 P----CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT------------------------------------GSHD 419 (491)
Q Consensus 380 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------~~~d 419 (491)
. ..+....+.+..... ....++++|+..++++ ...+
T Consensus 362 ~~~~~~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~ 437 (668)
T 1kv9_A 362 PGVRYEKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS 437 (668)
T ss_dssp TTTTCSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred ccccccCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc
Confidence 0 000000000000000 0000123333333222 1234
Q ss_pred CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
|.|+.||+.+|+.+.....+ .+.....+...+.+++.++.||.|+.||..+++..
T Consensus 438 g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 88999999999998877643 34444556667888999999999999999887643
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=1.9e-07 Score=81.18 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=129.2
Q ss_pred EEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccC-CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC
Q 011179 230 IFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 230 i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 306 (491)
...+.|++++..+++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++++.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 567899998754444332 5799999999999988775322 233456664 34555556678999999997 56
Q ss_pred ceeeEeccc-cCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 307 KPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 307 ~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
+.+..+... ..+ ..+++||+.++++..++.|.++|..+.+ .+
T Consensus 97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~----------------------------------v~ 139 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFK----------------------------------LI 139 (266)
T ss_dssp EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCC----------------------------------EE
T ss_pred cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCc----------------------------------EE
Confidence 666666432 222 3355577777776678899999998743 22
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC-------------CCCeeeeEecCCC
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPSQ 452 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~sp~~ 452 (491)
..+........+ ...+.+.+. ++.+.+....++.|.+.|..+++.+..+... ....+.++|+|++
T Consensus 140 ~~I~Vg~~~~p~-~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 140 KKHNVKYNGHRV-IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EEEECEETTEEC-CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred EEEEECCCCccc-ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 222211100000 001111233 5655555556789999999999998887531 1356899999998
Q ss_pred C-eEEEEeCCCcEEEEcCCCCC
Q 011179 453 P-MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 453 ~-~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+ +++++...+.|.+-++....
T Consensus 218 ~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 218 KRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TEEEEEETTCSEEEEEEEEECC
T ss_pred CEEEEECCCCCeEEEEEEeccc
Confidence 7 66667778899998887654
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.92 E-value=5.7e-06 Score=85.56 Aligned_cols=287 Identities=7% Similarity=0.083 Sum_probs=170.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec-----CCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
...|.++...++|.+.+ |+.++-|.+||..++... ..... .-....|.++...++|.+. .|+.+ -|.+|+.
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEET
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcC
Confidence 46789999888887544 554444889998876332 22211 1113469999999888754 45555 5888998
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-------cCCC
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSD 271 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------h~~~ 271 (491)
.++.............. -....|.++...++|. |.+|+.++-|..|+..+.... .+.. ....
T Consensus 290 ~~~~~~~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGS---------LSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTS---------CSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSS
T ss_pred CCCeEEEEecCCCCCCC---------CCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCe
Confidence 77665332211100000 1123699999999987 677777777999987665432 2211 2346
Q ss_pred eeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--------cccCcEEEEEEcCCCCEEEEeeCCCcEEEE
Q 011179 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 343 (491)
|.++... .+++ |..|+.++-|..||.. ......... .....|.++...++++.|..|+.++.|.+|
T Consensus 359 V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 359 VSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp EEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred eEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 8888874 5555 5567888778889875 222211111 123568999998888856677777779999
Q ss_pred eCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEE
Q 011179 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 423 (491)
|..+.. +..+...... ......++....++|.+.+ |+.+ .|.
T Consensus 433 d~~~~~-----------------------------------~~~~~~~~~~-l~~~~v~~i~~d~~g~lwi-gt~~-Gl~ 474 (795)
T 4a2l_A 433 HRNSGQ-----------------------------------VENFNQRNSQ-LVNENVYAILPDGEGNLWL-GTLS-ALV 474 (795)
T ss_dssp ETTTCC-----------------------------------EEEECTTTSC-CSCSCEEEEEECSSSCEEE-EESS-CEE
T ss_pred eCCCCc-----------------------------------EEEeecCCCC-cCCCeeEEEEECCCCCEEE-EecC-cee
Confidence 987632 1111110000 0000111222334666544 4444 489
Q ss_pred EEECCCCcEEEeec------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 424 VYDLVSGEQVAALK------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 424 iwd~~~~~~~~~~~------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
+||..+++...... .....|.++...++|.+.+.+. +| |..|+...
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~ 526 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEG 526 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEET
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCC
Confidence 99988775543221 1236789999999998665543 44 77777654
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=2.4e-06 Score=77.94 Aligned_cols=203 Identities=15% Similarity=0.104 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCC-----------------CceeEEEEEECCCCCeEEEEE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-----------------LRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~~v~~~~~sp~~~~l~~~~ 188 (491)
...+++|+++|+++.++..++.|..|+..++.. ........ ....+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345688999999788888899999999876532 22211110 012578899998333455555
Q ss_pred CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeC-----------------CCe
Q 011179 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------DDC 250 (491)
Q Consensus 189 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~-----------------dg~ 250 (491)
..+.|..++..++....+..... + ........+++.+ +|+..++-.. ++.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~---~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVD---G---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEET---T---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCCEEEEecccCC---C---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 55668888877654322211100 0 0011467899999 9986665432 367
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCC
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 329 (491)
|..||..+++..... ........++++ ++++.|+.+ +..+.|.+|++.... .+. ...+..... ...+++.++|+
T Consensus 167 v~~~d~~~~~~~~~~-~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 167 LIKYDPSTKETTLLL-KELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEETTTTEEEEEE-EEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEECTTSC
T ss_pred EEEEeCCCCEEEEec-cCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEECCCCC
Confidence 999998777653322 222445789997 777755544 566899999986221 111 111111123 67789999998
Q ss_pred EEEEeeC----------CCcEEEEeCC
Q 011179 330 YLISNGK----------DQAIKLWDIR 346 (491)
Q Consensus 330 ~l~s~~~----------dg~i~iwd~~ 346 (491)
+.++... .+.|..+|..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred EEEEecCcccccccCCCccEEEEECCC
Confidence 7766544 3456666653
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=9.2e-07 Score=87.11 Aligned_cols=199 Identities=13% Similarity=0.130 Sum_probs=117.9
Q ss_pred CCEEEEEEc-CCeEEEEEC-CCCeEEEEEeecCCCc--------eeEEEEEECCCCCe----EEEEECCCeEEEEECCCC
Q 011179 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 136 g~~la~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~----l~~~~~d~~i~iw~~~~~ 201 (491)
+..|.+++. ++.|.-+|. .+|+.+-+........ .....++++|.+.. |++++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 788999999 8887665543322110 00122445444444 888888999999999999
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEeccCCC----
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTSD---- 271 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~h~~~---- 271 (491)
+............+... ...++ + .++ .+++++ .+|.|+.+|..+++.+-++......
T Consensus 142 ~~~W~~~~~~~~~~~~~-------~ssP~----v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTL-------TIAPY----V-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGTCBC-------CSCCE----E-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCcccee-------ecCCE----E-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 87654433221100000 00011 1 134 456655 3799999999999987666432111
Q ss_pred ---------------------------------e-eEEEEecCCCCEEEEEeCC----------------CeEEEEeccc
Q 011179 272 ---------------------------------V-NTVCFGDESGHLIYSGSDD----------------NLCKVWDRRC 301 (491)
Q Consensus 272 ---------------------------------v-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~ 301 (491)
+ ..+++. +...+++.++.+ +.|..+|..
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 0 134453 556677777655 378888887
Q ss_pred ccCCCceeeEecc--cc--------CcEEEEEEc-CCC---CEEEEeeCCCcEEEEeCCCCCCccc
Q 011179 302 LNVKGKPAGVLMG--HL--------EGITFIDSR-GDG---RYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 302 ~~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
+++.+..++. |. .++. +... .+| ..++.++.+|.+.++|..+++....
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 6666555432 21 2222 2222 467 4677788999999999988765443
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=6e-07 Score=88.49 Aligned_cols=311 Identities=12% Similarity=0.104 Sum_probs=165.7
Q ss_pred CCEEEEEEc-CCeEEEEEC-CCCeEEEEEeecCCCce-------e-EEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLRW-------T-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 136 g~~la~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~-------~-v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
+..+.+++. ++.|.-+|. .+|+.+-+......... . -..++. ++..+++++.|+.|..+|..+|+...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 88877655433221100 0 001122 35678888889999999999998765
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC--------
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD-------- 271 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~-------- 271 (491)
.........+... ...++ .. ++ .+++++. ++.|+.+|..+++.+-++......
T Consensus 140 ~~~~~~~~~~~~~-------~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~ 206 (571)
T 2ad6_A 140 EVEVCDPKVGSTL-------TQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKD 206 (571)
T ss_dssp EEECCCGGGTCBC-------CSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred EecCCCCCcccee-------ccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcc
Confidence 4433221100000 00011 11 34 5666654 789999999999987666432110
Q ss_pred ------------------------------eeEEEEecCCCCEEEEEeCC----------------CeEEEEecccccCC
Q 011179 272 ------------------------------VNTVCFGDESGHLIYSGSDD----------------NLCKVWDRRCLNVK 305 (491)
Q Consensus 272 ------------------------------v~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~ 305 (491)
...+++. +....++.++.+ +.|..+|.. +
T Consensus 207 ~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----t 281 (571)
T 2ad6_A 207 FNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----T 281 (571)
T ss_dssp TTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----T
T ss_pred cccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----C
Confidence 0124554 445566666532 358888887 5
Q ss_pred CceeeEecc--c--------cCcEEEEEEcCCCC---EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCC
Q 011179 306 GKPAGVLMG--H--------LEGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 306 ~~~~~~~~~--~--------~~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
++.+..+.. | ..++. +...++|+ .++.++.+|.+.++|..+++.......... ..|... +...
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~~-~d~~- 357 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFKK-VDLK- 357 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEEE-ECTT-
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-cccccc-cccc-
Confidence 666555432 1 12222 22234674 577888999999999988765433222110 000000 0000
Q ss_pred CCcccc------CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-----------------------------
Q 011179 373 QARDLK------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS----------------------------- 417 (491)
Q Consensus 373 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----------------------------- 417 (491)
.+.-+. .+.........+..... -...++++|+..++++..
T Consensus 358 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 358 TGTPVRDPEFATRMDHKGTNICPSAMGFH----NQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp TCSEEECGGGCCCTTCCEEEESSCTTCSS----CSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CCceecccccCCCCCCCceEECCCCcccc----CCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 000000 00000000000000000 001123444555554432
Q ss_pred --------cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCCC
Q 011179 418 --------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 418 --------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~~ 475 (491)
.+|.|+.||+.+++.+.++... .++....+...+..++.++.||.|+.||..+++..
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3578999999999998877632 33444444445667778999999999999887643
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=5.3e-07 Score=90.79 Aligned_cols=166 Identities=15% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEECC--CCCeEEEEEC------CCeEEEEECCCCccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL 206 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~~~------d~~i~iw~~~~~~~~~~ 206 (491)
+..|++++.|+.|..+|..+|+.+-+....... ...+ .-+| .+..++++.. ++.|..+|..+|+....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 567888889999999999999777665432110 0011 1111 1334555433 58999999999987655
Q ss_pred cccccccccccc-------cccCC-C-------CceecEEEEEEcCCCCEEEEEeCCC-------------------eEE
Q 011179 207 ANVTEIHDGLDF-------SAADD-G-------GYSFGIFSLKFSTDGRELVAGSSDD-------------------CIY 252 (491)
Q Consensus 207 ~~~~~~~~~~~~-------~~~~~-~-------~h~~~i~~~~~s~~~~~l~~~~~dg-------------------~i~ 252 (491)
...........+ ....- . ++......+++.++...+++++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 432110000000 00000 0 1111223478888888888888776 499
Q ss_pred EEECCCCeeeEEEec--cC-------CCeeEEEEecCCCC---EEEEEeCCCeEEEEecccccCCCcee
Q 011179 253 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 253 vwd~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~ 309 (491)
.+|..+++.+-.+.. |. .+.....+. .+++ .++.++.+|.+.++|.. +++.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence 999999998877653 22 222222222 2444 68899999999999987 55554
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=1.7e-05 Score=82.09 Aligned_cols=282 Identities=11% Similarity=0.094 Sum_probs=170.6
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec-----CCCceeEEEEEECCCCCeEEEEECCCeEEEEEC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~ 198 (491)
...|+++...++|.+. .|+.+ -|.+|+..++.. ...... .-....|.++...++|. |..|+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 4679999999999854 45555 488999887632 222111 11234699999999887 556777777888886
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--------cCC
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--------HTS 270 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~ 270 (491)
.++.......... ..+ -....|.++...++|. |.+|+.++-|..||..+++....... ...
T Consensus 338 ~~~~~~~~~~~~~-~~~---------l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 406 (795)
T 4a2l_A 338 IRNRFKNIRNIPY-KNS---------LSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSN 406 (795)
T ss_dssp GGGSSEEECCCTT-SSS---------CSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCS
T ss_pred CcccceEEcCCCC-CCC---------CCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCc
Confidence 6544322111100 000 0123699999998887 66778776799999887664332211 135
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-----cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
.|.++... .++++|..|+.++-+..||.. .++ ...+. .+...|.++...++|++.+.. . +.|.+||.
T Consensus 407 ~v~~i~~d-~~g~~lWigt~~~Gl~~~d~~----~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~ 478 (795)
T 4a2l_A 407 NIKAVYVD-EKKSLVYIGTHAGGLSILHRN----SGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNP 478 (795)
T ss_dssp CEEEEEEE-TTTTEEEEEETTTEEEEEETT----TCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEET
T ss_pred cEEEEEEc-CCCCEEEEEeCcCceeEEeCC----CCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeC
Confidence 68888885 677757778887789999975 322 22222 134578999998888765544 4 45888987
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC---ceeEeeEEEEecccccCCCcEEEEEecCCeE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 422 (491)
.+.. ...+... .... .....+....++|++.+.. . +.|
T Consensus 479 ~~~~-----------------------------------~~~~~~~~~~~~~~--~~~i~~i~~d~~g~lWigt-~-~Gl 519 (795)
T 4a2l_A 479 EQRS-----------------------------------FTTIEKEKDGTPVV--SKQITTLFRDSHKRLWIGG-E-EGL 519 (795)
T ss_dssp TTTE-----------------------------------EEECCBCTTCCBCC--CCCEEEEEECTTCCEEEEE-S-SCE
T ss_pred CCCe-----------------------------------EEEccccccccccC--CceEEEEEECCCCCEEEEe-C-Cce
Confidence 6521 1111100 0000 0001122334467655544 4 458
Q ss_pred EEEECCCCcEEEeec-------cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 423 YVYDLVSGEQVAALK-------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
..||..+++. .+. .....|.++...++|.+.+++ ..| |..|+...
T Consensus 520 ~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d~~~ 571 (795)
T 4a2l_A 520 SVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFNEKD 571 (795)
T ss_dssp EEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEETTT
T ss_pred EEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeECCCC
Confidence 8999877765 222 123578899999999865544 344 77777644
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.84 E-value=5.4e-06 Score=71.66 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=134.2
Q ss_pred cccCCCCceEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 119 PVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~i~~~~~s~dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
.+.+....+..++|+|+++.|+ +...++.|...|.. ++.+...... +. ...-.+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-FV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-SC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-CC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 4456667899999999876555 56678889999998 6666555332 21 2477888999888766655678899998
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEe-------c
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------A 267 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~-------~ 267 (491)
+............. +.. ...........++|+|+++.|+++.......+|.+. ....+..+. .
T Consensus 98 v~~~~~i~~~~~~~------~~~-~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSEVKILKKIK------IPL-QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp ECTTCCEEEEEEEE------CCC-SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred cCCCCeeeeeeeec------ccc-ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 86554211111110 000 001123367899999999877777765444444443 111122221 1
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc---------cCcEEEEEEcCCCCEEEEeeCCC
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------LEGITFIDSRGDGRYLISNGKDQ 338 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~s~~~dg 338 (491)
+...+..+++.|..+++++.......+.++|.. ++.+..+.-. -..-..|+|.++|++.++ ++.+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence 334678999998888888888888999999974 4444433221 125678999999985555 5666
Q ss_pred cEEEEe
Q 011179 339 AIKLWD 344 (491)
Q Consensus 339 ~i~iwd 344 (491)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555554
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=9.2e-07 Score=75.91 Aligned_cols=181 Identities=15% Similarity=0.108 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCEEEEEEcCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCc
Q 011179 126 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~ 202 (491)
-...+.|+ ++.++.+.+.+| .|+++|+.+++.+......... --..+++ +++.|... -.++.+.++|.++.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~--FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY--FGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC--CEEEEEE--ETTEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc--ceeEEEE--eCCEEEEEEeeCCEEEEEECccCc
Confidence 34788998 677677777766 8999999999888776543321 1122333 35455544 458899999999988
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc--C---CCeeEEEE
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--T---SDVNTVCF 277 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h--~---~~v~~~~~ 277 (491)
....+.... . ...+++|++.|+....++.|.++|..+.+.+.++.-. . ..++.+.|
T Consensus 119 ~~~ti~~~~--e-----------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 119 QVRSFNYDG--E-----------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp EEEEEECSS--C-----------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECCC--C-----------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 765544321 1 1233356777777777888999999999988877632 1 34566888
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc------------cCcEEEEEEcCCCCEEEEeeC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~s~~~ 336 (491)
. ++.+++..-.+..|.+.|.. +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 180 ~--~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 V--DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp E--TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred E--CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5 56666666678899999987 55555544321 235689999998887777664
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.82 E-value=3.8e-06 Score=76.61 Aligned_cols=251 Identities=8% Similarity=0.061 Sum_probs=143.9
Q ss_pred EEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccc-----cccccccccCCCCceecEEEEEEcC-CCCEEEEE
Q 011179 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-----HDGLDFSAADDGGYSFGIFSLKFST-DGRELVAG 245 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~ 245 (491)
..+++|.++++++.++..++.|..|+..++........... ..+.. .. ........+..+++.+ +++ |+++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST-DA-EKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCC-CG-GGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccccccccccc-ch-hccccCCCCceEEEcCCCCc-EEEE
Confidence 55688999998788888899999998876544321110000 00000 00 0000012478899998 554 6666
Q ss_pred eCCCeEEEEECCCCeeeEEEec-----cCCCeeEEEEecC-CCCEEEEEeC-----------------CCeEEEEecccc
Q 011179 246 SSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDE-SGHLIYSGSD-----------------DNLCKVWDRRCL 302 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd~~~~ 302 (491)
...+.|..+|..++.. ..+.. .......+++. + ++++.++-.. ++.|..||..
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-- 173 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-- 173 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT--
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC--
Confidence 5556688998776543 22221 12346788886 6 7777766432 3668888864
Q ss_pred cCCCceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCC
Q 011179 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
.+. +..+.........++++|+++.|+.+ ...+.|..|++.....
T Consensus 174 --~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~------------------------------- 219 (322)
T 2fp8_A 174 --TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK------------------------------- 219 (322)
T ss_dssp --TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------------------------------
T ss_pred --CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------------------------------
Confidence 222 22222222344578999999866555 5568899999875210
Q ss_pred CceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec----------CCeEEEEECCCCcEEEeeccCC----CCeeeeE
Q 011179 382 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHT----SPVRDCS 447 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~ 447 (491)
.....+..... ...++++++|++.++... .+.|..+|. .++.+..+.... ..++.++
T Consensus 220 -~~~~~~~~~~g-------P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 220 -GTAEVLVKIPN-------PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp -TCEEEEEECSS-------EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEE
T ss_pred -CccceEEeCCC-------CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEE
Confidence 00111110000 111245668886666544 467888886 577777665332 3466777
Q ss_pred ecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 448 WHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 448 ~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+ .++.++++...++.|.++++....
T Consensus 291 ~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 291 E-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp E-ETTEEEEECSSCSEEEEEEC----
T ss_pred E-eCCEEEEeecCCCceEEEeccccc
Confidence 6 466666666678889999986543
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.82 E-value=9.4e-06 Score=79.96 Aligned_cols=317 Identities=10% Similarity=0.043 Sum_probs=156.8
Q ss_pred EEEcCCCCE----EEEEEcCCeEEEEECCCCeEEEEEeecCCC-ceeEEE-EEECCCCCeEEEEE------CCCeEEEEE
Q 011179 130 SQFSADGSL----FVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTD-TSLSPDQRHLVYAS------MSPIVHIVD 197 (491)
Q Consensus 130 ~~~s~dg~~----la~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~-~~~sp~~~~l~~~~------~d~~i~iw~ 197 (491)
++++|.+.. |++++.|+.|.-+|..+|+.+-+....... ...+.+ ... .++ .+++++ .++.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 445444444 888888999999999999776554332100 001111 011 134 455544 378999999
Q ss_pred CCCCccccccccccccccc------cccc-------------cCC---CCceecEEEEEEcCCCCEEEEEeCC-------
Q 011179 198 VGSGTMESLANVTEIHDGL------DFSA-------------ADD---GGYSFGIFSLKFSTDGRELVAGSSD------- 248 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~------~~~~-------------~~~---~~h~~~i~~~~~s~~~~~l~~~~~d------- 248 (491)
..+|+..-........... .+.. ... .+....-..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999876444322111000 0000 000 0000001134666777778877665
Q ss_pred ---------CeEEEEECCCCeeeEEEeccCCC------e---eEEEEecCCC---CEEEEEeCCCeEEEEecccccCCCc
Q 011179 249 ---------DCIYVYDLEANKLSLRILAHTSD------V---NTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 249 ---------g~i~vwd~~~~~~~~~~~~h~~~------v---~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~ 307 (491)
+.|..+|..+++.+-.+...... . .-+.....++ ..++.++.+|.+.+.|.+ +++
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~ 344 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----DGA 344 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----TCC
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC----CCC
Confidence 38999999999987666532111 1 1122211345 567788999999999987 555
Q ss_pred eeeEeccc-------------cCcE--------------------------EEEEEcCCCCEEEEeeCCCcEEEEeCCCC
Q 011179 308 PAGVLMGH-------------LEGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 308 ~~~~~~~~-------------~~~i--------------------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 348 (491)
.+...... ..++ ..++++|+..++++...+-...++..+..
T Consensus 345 ~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 424 (599)
T 1w6s_A 345 LVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP 424 (599)
T ss_dssp EEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred EeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc
Confidence 54433210 0111 24677888888877765543333322110
Q ss_pred CCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeE-eeEEE---EecccccCCCcEEEEEecCCeEEE
Q 011179 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~~~~dg~i~i 424 (491)
........ ...+.... .+.......+....+..+....... ..... .+...+...+.+++.++.||.++.
T Consensus 425 ~~~g~~~~-----g~~~~~~~-~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 425 YKAGQFFV-----GATLNMYP-GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp CCTTSCCC-----CEEEEEEE-CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred ccCCccee-----cccceecc-CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence 00000000 00000000 0000000000111222222211100 00000 011112225677888999999999
Q ss_pred EECCCCcEEEeeccCCCCe-eeeEecCCCC-eEEEE
Q 011179 425 YDLVSGEQVAALKYHTSPV-RDCSWHPSQP-MLVSS 458 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~~v-~~~~~sp~~~-~l~s~ 458 (491)
||..+|+.+..++...+.+ .-+.+..+|+ ++++.
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 9999999998886433222 2355667887 45443
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.81 E-value=1.5e-06 Score=74.65 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=117.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEeccCCCe--eEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 230 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 230 i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
...+.|+ ++..+.+.+.+| .|+++|+++++.+.++.-.. .. ..+++. ++++.+..-.++.+.+||.. +
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t 116 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----N 116 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECc----c
Confidence 4678888 676666666665 89999999999988875432 33 335553 34555555568999999997 6
Q ss_pred CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.+..+.....+ ..+ .++++.|+.+..++.|.++|..+.+ .+
T Consensus 117 ~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~----------------------------------v~ 159 (262)
T 3nol_A 117 LRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLT----------------------------------PV 159 (262)
T ss_dssp CCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCS----------------------------------EE
T ss_pred CcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCe----------------------------------EE
Confidence 6677666543322 233 3567777777667889999998743 22
Q ss_pred EEEeCC---ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC------------CCCeeeeEecC
Q 011179 386 ATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------TSPVRDCSWHP 450 (491)
Q Consensus 386 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~sp 450 (491)
..+... .....+....+ . +|++.+....++.|.+.|..+|+.+..+... ..-.+.++|+|
T Consensus 160 ~~I~V~~~g~~~~~lNELe~----~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEW----V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEEECEETTEECCCEEEEEE----E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEEeccCCccccccceeEE----E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 222221 11111111111 1 6766665556889999999999998887532 13568899999
Q ss_pred CCCeEEEEeC
Q 011179 451 SQPMLVSSSW 460 (491)
Q Consensus 451 ~~~~l~s~~~ 460 (491)
+++.|+..+.
T Consensus 235 ~~~~lfVTGK 244 (262)
T 3nol_A 235 EHHRLFVTGK 244 (262)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEECC
Confidence 9886665553
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=3e-06 Score=83.47 Aligned_cols=304 Identities=11% Similarity=0.037 Sum_probs=152.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEEC------CCeEEEEECCCCcccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~------d~~i~iw~~~~~~~~~~~ 207 (491)
+..|++++.|+.|..+|..+|+.+-+..... +... ..+.-+| .+..+++++. ++.|..+|..+|+.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999997766543322 1000 0011112 1334555554 789999999999876544
Q ss_pred ccccccccc----------ccc---------ccC---CCCceecEEEEEEcCCCCEEEEEeCC----------------C
Q 011179 208 NVTEIHDGL----------DFS---------AAD---DGGYSFGIFSLKFSTDGRELVAGSSD----------------D 249 (491)
Q Consensus 208 ~~~~~~~~~----------~~~---------~~~---~~~h~~~i~~~~~s~~~~~l~~~~~d----------------g 249 (491)
......... .+. ... ..+.......+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 322111000 000 000 00000011235666766667666532 3
Q ss_pred eEEEEECCCCeeeEEEec--cCC----CeeEEEEe--cCCC---CEEEEEeCCCeEEEEecccccCCCceeeEecccc--
Q 011179 250 CIYVYDLEANKLSLRILA--HTS----DVNTVCFG--DESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-- 316 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~--h~~----~v~~~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 316 (491)
.|..+|..+++.+-.+.. |.. .+....+. ..++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCCc
Confidence 699999999998776652 211 11222221 1245 367788999999999987 555444332110
Q ss_pred -----------CcE--------------------------EEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCc
Q 011179 317 -----------EGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 317 -----------~~i--------------------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.++ ..++++|+..++++...+....++.............
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~--- 425 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV--- 425 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC---
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc---
Confidence 111 2357788888888776654444443322100000000
Q ss_pred cceeeeeeecCC------CCCcccc--CCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCc
Q 011179 360 SYEWDYRWMDYP------PQARDLK--HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 360 ~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 431 (491)
. ........+ ..+...+ ...++.+-.+..... .+...+...+..++.++.||.|+.||..+|+
T Consensus 426 g--~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 426 G--ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-------AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp C--EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-------CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred c--ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-------ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 0 000000000 0000000 001222222211100 0111122246678889999999999999999
Q ss_pred EEEeeccCCCC-eeeeEecCCCCeEEE
Q 011179 432 QVAALKYHTSP-VRDCSWHPSQPMLVS 457 (491)
Q Consensus 432 ~~~~~~~h~~~-v~~~~~sp~~~~l~s 457 (491)
.+..++..... -.-+.+..+|++++.
T Consensus 497 ~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 497 ELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 99888743221 122445578874443
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=1.4e-06 Score=74.68 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=118.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe--eEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc
Q 011179 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 230 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 307 (491)
...+.|+ ++..+++.+.+|.|+++|+++++.+..+ - .... ..+++ .++++.+..-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECC----cCc
Confidence 4567777 4566677778889999999999988877 2 2333 33555 345666667779999999997 667
Q ss_pred eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEE
Q 011179 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
.+..+.....+ ..++ ++++.|+.+..++.|.++|..+.+ .+..
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~----------------------------------v~~~ 170 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFA----------------------------------LVGA 170 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCC----------------------------------EEEE
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCe----------------------------------EEEE
Confidence 77766543332 3343 567788777778899999998843 2222
Q ss_pred EeCCc---eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC-------------CCCeeeeEecCC
Q 011179 388 YKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPS 451 (491)
Q Consensus 388 ~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~sp~ 451 (491)
+.... ....+....+ . +|++.+....++.|.+.|..+++.+..+... ..-.+.++|+|+
T Consensus 171 I~V~~~g~~v~~lNeLe~----~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 171 VQVKLRGQPVELINELEC----A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EECEETTEECCCEEEEEE----E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEeCCCCcccccccccEE----e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 22111 1111111111 1 6766655556889999999999998877521 135689999998
Q ss_pred CCeEEEEe
Q 011179 452 QPMLVSSS 459 (491)
Q Consensus 452 ~~~l~s~~ 459 (491)
++.|+..+
T Consensus 246 ~~rlfVTG 253 (268)
T 3nok_A 246 SGRIFMTG 253 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEeC
Confidence 77555444
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=1.5e-05 Score=70.46 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=131.9
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK 260 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~ 260 (491)
.+|+.+.. +.|+.+++................ ....+..++|++++..|+.+. .++.|..+++....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-----------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-----------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC-----------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence 45555553 478888887654321100000000 011577899999766665554 56899999997765
Q ss_pred eeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeC---
Q 011179 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK--- 336 (491)
Q Consensus 261 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~--- 336 (491)
....+.........+++.+.++.++++-...+.|.++++. +.....+ .........++++|++..|+.+..
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 4333323335678999974345566666667899999985 2212222 212245688999997665554443
Q ss_pred CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE
Q 011179 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 416 (491)
.+.|..+++.... ...+.... . .....++++++++.|+.+
T Consensus 145 ~~~I~~~~~dg~~-----------------------------------~~~~~~~~-~----~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 145 NPKIETSHMDGTN-----------------------------------RRILAQDN-L----GLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp SCEEEEEETTSCC-----------------------------------CEEEECTT-C----SCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEecCCCC-----------------------------------cEEEEECC-C----CCCcEEEEcCCCCEEEEE
Confidence 3578777765311 11111000 0 111233566676666555
Q ss_pred e-cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 417 S-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 417 ~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
. ..+.|.++|+........+.. ......++.. .+.++++....+.|.+++..++.
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 4 467999999876544333332 2334567664 33344444456889999987654
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=3.7e-05 Score=75.78 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=114.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCcee------EEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT------VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
+..+++++.++.|.-+|..+|+.+-+.......... -..++. .+..+++++.++.|.-+|..+|+..-....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666455889999999776655433221100 011112 356678888999999999999987654433
Q ss_pred ccccccccccccCCCCceecEEEEEEcCCCC-EEEEEeC------CCeEEEEECCCCeeeEEEeccCCCe----------
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSS------DDCIYVYDLEANKLSLRILAHTSDV---------- 272 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~------dg~i~vwd~~~~~~~~~~~~h~~~v---------- 272 (491)
......... ...++.. .=..+++ .+++++. ++.|+-+|..+++.+-........+
T Consensus 146 ~~~~~~~~~-------~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~ 217 (582)
T 1flg_A 146 ADHGAGYTM-------TGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTV 217 (582)
T ss_dssp SCGGGTCBC-------CSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEE
T ss_pred CCCCcCccc-------ccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccc
Confidence 221100000 0011110 0001233 5666553 7899999999998766543211000
Q ss_pred -------------------------------eEEEEecCCCCEEEEEeC--------------------C----CeEEEE
Q 011179 273 -------------------------------NTVCFGDESGHLIYSGSD--------------------D----NLCKVW 297 (491)
Q Consensus 273 -------------------------------~~~~~~~~~~~~l~s~~~--------------------d----g~i~iw 297 (491)
..+++. +...+++.+.. | +.|.-+
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al 296 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV 296 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence 124454 45567776653 2 578888
Q ss_pred ecccccCCCceeeEecc--cc--------CcEEEEEEc-CCCC---EEEEeeCCCcEEEEeCCCCCCccc
Q 011179 298 DRRCLNVKGKPAGVLMG--HL--------EGITFIDSR-GDGR---YLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~ 353 (491)
|.. +++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++....
T Consensus 297 D~~----TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 297 DPS----SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp CTT----TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eCC----CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 987 6666665532 21 2222 2222 4674 788899999999999988765543
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.73 E-value=1.4e-05 Score=72.15 Aligned_cols=228 Identities=7% Similarity=-0.021 Sum_probs=132.2
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-- 248 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-- 248 (491)
....++|+++++++++-..++.|..|+..... ....... ..+..+++.++|+++++....
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~-----------------~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVE-----------------GKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECS-----------------SEEEEEEECTTSCEEEEEECTTS
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCC-----------------CCceeEEEcCCCcEEEEeccCCc
Confidence 46789999999866666578899999876532 1111110 157889999999965554332
Q ss_pred CeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc-eeeE---------eccccC
Q 011179 249 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV---------LMGHLE 317 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~---------~~~~~~ 317 (491)
..|..+|..+++...... ........++.. +++..+++-..++.|.++|.. ... .+.. ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSC
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCC
Confidence 357778877777543222 122233455543 444455555468888888874 211 1110 001112
Q ss_pred cEEEEEEcCCCCEEEEe-eCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEe
Q 011179 318 GITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 318 ~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
....+ +|+++.|+.+ ...+.|..+++........ ...+..+
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~----------------------------~~~~~~~-------- 211 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------PEIFVEQ-------- 211 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC----------------------------CEEEEES--------
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc----------------------------cEEEecc--------
Confidence 34455 7787766544 4567899999864100000 0011110
Q ss_pred eEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEE--EeeccCCCCeeeeEec---CCCCeEEEEeCCC
Q 011179 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALKYHTSPVRDCSWH---PSQPMLVSSSWDG 462 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s---p~~~~l~s~~~Dg 462 (491)
.....++++++|++.++....+.|.++|.. ++.. ..+.......++++|. |++..|+.++..+
T Consensus 212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 011223566789877776677899999975 6653 3344334568999998 8988666665543
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=6.2e-06 Score=70.19 Aligned_cols=183 Identities=15% Similarity=0.081 Sum_probs=121.4
Q ss_pred CceEEEEEcCCCCEEEEEEcC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 125 SRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
.-...+.|++ +.+..+.+.+ +.|+++|+.+++.+.........- -..+++. .++..+..-.++.+.++|.++.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 4456889986 5555666554 489999999998877765443221 1223332 23344445568899999999988
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF 277 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~ 277 (491)
....+.... .-..+ .++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+
T Consensus 97 ~~~ti~~~~-----------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 97 PRARFRYPG-----------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEEEECSS-----------------CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEeCCC-----------------CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 766544321 11223 3567777777778999999999999888776322 35567777
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-------------ccCcEEEEEEcCCCCEEEEeeC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------------HLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~s~~~ 336 (491)
. ++.+++..-.+..|.+.|.. +++.+..+.- ..+-.+.|+++|+++.|.+.+.
T Consensus 158 ~--~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V--NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E--TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e--CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4 56666666568899999987 5555554431 1235689999998777766654
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=2.6e-05 Score=76.86 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCC------ceeEEEEEECCCCC-eEEEEE------CCCeEEEEECCCCc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQR-HLVYAS------MSPIVHIVDVGSGT 202 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~-~l~~~~------~d~~i~iw~~~~~~ 202 (491)
+..|++++.|+.|.-+|..+|+.+-+....... ..++. ..=..+++ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 557888889999999999999776554332210 11111 00001233 455554 37899999999998
Q ss_pred ccccccccccc--------------cccc-cc-----------ccCCCCceecEEEEEEcCCCCEEEEEeC---------
Q 011179 203 MESLANVTEIH--------------DGLD-FS-----------AADDGGYSFGIFSLKFSTDGRELVAGSS--------- 247 (491)
Q Consensus 203 ~~~~~~~~~~~--------------~~~~-~~-----------~~~~~~h~~~i~~~~~s~~~~~l~~~~~--------- 247 (491)
..-........ .+.. +. .....+.. .-..+++.|+...++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~-~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGA-PWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCC-CCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCcc-ccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 76533221100 0000 00 00000000 1124677777777777663
Q ss_pred -----------C----CeEEEEECCCCeeeEEEec--cCC----CeeEEEEec---CCC---CEEEEEeCCCeEEEEecc
Q 011179 248 -----------D----DCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD---ESG---HLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 248 -----------d----g~i~vwd~~~~~~~~~~~~--h~~----~v~~~~~~~---~~~---~~l~s~~~dg~i~iwd~~ 300 (491)
| +.|..+|..+++.+-.+.. |.. .+....+.. .++ ..++.++.+|.++++|..
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 6899999999998877642 321 111111111 345 378889999999999987
Q ss_pred cccCCCceeeE
Q 011179 301 CLNVKGKPAGV 311 (491)
Q Consensus 301 ~~~~~~~~~~~ 311 (491)
+++.+..
T Consensus 355 ----tG~~lw~ 361 (582)
T 1flg_A 355 ----NGKLQNA 361 (582)
T ss_dssp ----TCCEEEE
T ss_pred ----CCCEecc
Confidence 5554443
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=2.5e-05 Score=70.58 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=117.2
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-C-eEEEEECCCCc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-IVHIVDVGSGT 202 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-~i~iw~~~~~~ 202 (491)
.....++|+++|+++++-..++.|..||.... ... ..... ..+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-HATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-EEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-EEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 45678999999997777667899999998764 222 22222 368899999999966554432 2 46677777776
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEe---------ccCCCe
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV 272 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~---------~h~~~v 272 (491)
.......... .....++..+++..+++-..++.|+++|...++. +.... ..-...
T Consensus 107 ~~~~~~~~~~---------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 107 VETLLTLPDA---------------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTC---------------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EEEEEeCCCc---------------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 5433221110 0123344455554444444688999999876532 11111 111234
Q ss_pred eEEEEecCCCC-EEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 011179 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 346 (491)
+.+ + ++++ ++++-...+.|..+++.... .......+.. ......++++++|+++++....+.|.++|..
T Consensus 172 ngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGL--K-RFGNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEE--E-EETTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCc--C-cCCCEEEEEeCCCCEEEEEEeCCCC-CCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 555 4 4454 55555667899999986210 0011111111 1234568899999887777777889999864
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.71 E-value=1.9e-06 Score=88.21 Aligned_cols=196 Identities=14% Similarity=0.084 Sum_probs=113.9
Q ss_pred ceEEEEEc-CCCCEEEEEEc-C----CeEEEEECCCC-eEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-----CeE
Q 011179 126 RAYVSQFS-ADGSLFVAGFQ-A----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV 193 (491)
Q Consensus 126 ~i~~~~~s-~dg~~la~~~~-d----g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i 193 (491)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+.. ........++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99999886543 2 25999999988 53211 111123468999999988887765 268
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe-ee--EEEe-
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS--LRIL- 266 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~-~~--~~~~- 266 (491)
.++++.++........... .......+.|+|||++|+..+. ...|+++|+.++. .. ..+.
T Consensus 250 ~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp EEEETTSCGGGCEEEEECC-------------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred EEEECCCCchhcEEEEecC-------------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 8888877643211110000 0013457899999999887663 4568999998752 12 3332
Q ss_pred ccCCCeeEEEEecCCCCEEEEEeCC--C--eEEEEecccccCCCceeeE-eccccC--cEEEEEEcCCCCEEEEeeCCCc
Q 011179 267 AHTSDVNTVCFGDESGHLIYSGSDD--N--LCKVWDRRCLNVKGKPAGV-LMGHLE--GITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 267 ~h~~~v~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~s~~~dg~ 339 (491)
........+.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGL 390 (751)
T ss_dssp CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTE
T ss_pred CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCE
Confidence 334455666664 444455555444 3 45555653 1111122 233333 34555554 2344555666675
Q ss_pred --EEEEeC
Q 011179 340 --IKLWDI 345 (491)
Q Consensus 340 --i~iwd~ 345 (491)
|.++|+
T Consensus 391 ~~l~~~dl 398 (751)
T 2xe4_A 391 TRIWTMMA 398 (751)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 555564
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=5.8e-05 Score=77.84 Aligned_cols=290 Identities=12% Similarity=0.079 Sum_probs=162.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEECCCCCeEEEEECCCeEEEEECC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~ 199 (491)
...|.++...++|.+.+ |+.+ -|.+||..++......... ......|.++...++|. |..|+..+-|.+++..
T Consensus 210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 35799999999988555 4455 6889998776332211110 01233699999988876 5556664568888987
Q ss_pred CCccccccc--cccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---------cc
Q 011179 200 SGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------AH 268 (491)
Q Consensus 200 ~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~h 268 (491)
++....... ...... ......-....|.++...++|. |.+|+.++-|..++........... ..
T Consensus 287 ~~~~~~~~~~~f~~~~~----~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIRE----GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp CC---------CEEECB----CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CCeeeeeeccccccccC----CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 765432221 000000 0000001223699999999887 6777766679999987654322110 02
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe----ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEe
Q 011179 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 344 (491)
...|.++... .+++ |..|+.++-|..||... .. ...+ ......|.++...+++.+.+ |+.++.|..+|
T Consensus 362 ~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~~----~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 362 NKVVSSVCDD-GQGK-LWIGTDGGGINVFENGK----RV-AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp SSCEEEEEEC-TTSC-EEEEEBSSCEEEEETTE----EE-EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred CcceEEEEEc-CCCC-EEEEeCCCcEEEEECCC----Ce-EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 3568888874 5555 55667666688888752 11 1111 12346789998888876544 66666788888
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCC-ceeEeeEEEEecccccCCCcEEEEEecCCeEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 423 (491)
..+.. +..+... .....+ +++...+++. |..|+. +.|.
T Consensus 434 ~~~~~-----------------------------------~~~~~~~~~~~~~v----~~i~~d~~g~-lwigt~-~Gl~ 472 (781)
T 3v9f_A 434 TRLKK-----------------------------------FQIIELEKNELLDV----RVFYEDKNKK-IWIGTH-AGVF 472 (781)
T ss_dssp SSSCE-----------------------------------EEECCSTTTCCCCE----EEEEECTTSE-EEEEET-TEEE
T ss_pred CCCCc-----------------------------------EEEeccCCCCCCeE----EEEEECCCCC-EEEEEC-CceE
Confidence 76521 1111100 000011 1122333565 444555 5699
Q ss_pred EEECCCCcEEEeeccC-----CCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 424 VYDLVSGEQVAALKYH-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.||..+++........ ...|.++...++|.+.+....+| |..|+...
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 9998876643322211 45789999998888655443345 66777654
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=9.7e-06 Score=68.99 Aligned_cols=182 Identities=15% Similarity=0.091 Sum_probs=116.3
Q ss_pred cEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCC-eeEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 229 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
-...+.|+. +..+.+.+.+ ..|+.+|+.+++.+..+.-.... -..+++. ++++....-.++.+.+||.. +
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----t 94 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----T 94 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----c
Confidence 356788886 5555555554 48999999999998877543222 2344553 45566666678999999997 6
Q ss_pred CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.+..+.....+ ..++ +++..|+.+..++.|.++|..+.+. +
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~----------------------------------~ 137 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----------------------------------V 137 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCE----------------------------------E
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeE----------------------------------E
Confidence 6777766543333 3444 4566666666788999999988432 2
Q ss_pred EEEeCCc---eeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccC-------------CCCeeeeEec
Q 011179 386 ATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH 449 (491)
Q Consensus 386 ~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~s 449 (491)
.++.... ....+....+. +|++.+....+..|.+.|..+|+.+..+... ..-.+.++++
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 2222111 11111111111 6776655556889999999999998877511 1356889999
Q ss_pred CCCCeEEEEe
Q 011179 450 PSQPMLVSSS 459 (491)
Q Consensus 450 p~~~~l~s~~ 459 (491)
|+++.|+..+
T Consensus 213 ~~~~~lfVTG 222 (243)
T 3mbr_X 213 AEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9877555554
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.9e-05 Score=77.77 Aligned_cols=282 Identities=11% Similarity=0.010 Sum_probs=163.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEe------ecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
...|.++...++|. |..|+.++-|..|+..++....... ........|.++...+++. |..|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 46799999999987 5667767778889887652211110 0111234699999988876 55666666688898
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEE
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTV 275 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~ 275 (491)
..++......... ......|.++...+++. |.+|+.++-|..+|..+++...... .....|.++
T Consensus 390 ~~~~~~~~~~~~~-------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 390 NGKRVAIYNKENR-------------ELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp TTEEEEECC------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred CCCCeEEEccCCC-------------CCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 8765443221000 01223689999888887 5667776779999987776432211 134578888
Q ss_pred EEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecc-----ccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 276 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
... .+++ |..|+. +-+..+|.. .......... ....|.++...++|.+.+ |+.++-|..||..+.
T Consensus 456 ~~d-~~g~-lwigt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-- 525 (781)
T 3v9f_A 456 YED-KNKK-IWIGTH-AGVFVIDLA----SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ-- 525 (781)
T ss_dssp EEC-TTSE-EEEEET-TEEEEEESS----SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC--
T ss_pred EEC-CCCC-EEEEEC-CceEEEeCC----CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC--
Confidence 874 5554 555666 567888875 2222211111 135789999998887555 444444777887652
Q ss_pred cccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC
Q 011179 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 430 (491)
.+..+....... .....++...++|.+.+ |+.+|.|..||..++
T Consensus 526 ---------------------------------~~~~~~~~~~l~--~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 526 ---------------------------------LVRKFNQYEGFC--SNTINQIYRSSKGQMWL-ATGEGLVCFPSARNF 569 (781)
T ss_dssp ---------------------------------EEEEECTTTTCS--CSCEEEEEECTTSCEEE-EETTEEEEESCTTTC
T ss_pred ---------------------------------eEEEccCCCCCC--CCeeEEEEECCCCCEEE-EECCCceEEECCCCC
Confidence 222222111000 00011223334676544 444665588998776
Q ss_pred cEEEeec---c-CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCC
Q 011179 431 EQVAALK---Y-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 431 ~~~~~~~---~-h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~ 470 (491)
+.. .+. + ....|.++...++|.+.++ +.+| |..++..
T Consensus 570 ~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 570 DYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp CCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETT
T ss_pred cEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECC
Confidence 533 222 1 1346888888888876554 4555 5556654
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.67 E-value=2.6e-06 Score=77.85 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=113.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccccccccc
Q 011179 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 136 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 215 (491)
+..|.+++.++.|..+|.. +......... ...+.++...+++. |..++.++.|..+|.. ++.........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~---~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---- 176 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK---KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---- 176 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECS---SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCC---CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC----
Confidence 4567778888999999988 6554443322 22355566776776 6667778999999988 65433222110
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEE
Q 011179 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~ 295 (491)
..+.++...+++. +.+++ +.|..+| .+++...........+.++... +++. |..++.++.+.
T Consensus 177 ------------~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g~-l~v~t~~~gl~ 238 (330)
T 3hxj_A 177 ------------AITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-EDGT-IYVTSLDGHLY 238 (330)
T ss_dssp ------------CCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-TTSC-EEEEETTTEEE
T ss_pred ------------CceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEEC-CCCe-EEEEcCCCeEE
Confidence 1344566767777 45555 7799999 7777766665555678888885 5554 55677778888
Q ss_pred EEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
.+|. .+..+..+......+..+.+.+++ .|..++.+|.|..+|.
T Consensus 239 ~~~~-----~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 239 AINP-----DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EECT-----TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EECC-----CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 8874 344444444333334445566566 4666777888999985
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.65 E-value=3.5e-06 Score=72.29 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=121.7
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
-...+.|+ ++.+..+.+.+|.|+++|+.+++.+... ..... --..+++.. ++..+..-.++.+.++|.++.+...
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~--FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI--FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC--CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc--ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence 34678887 4566677778899999999999877776 33221 112344432 2333444568899999999988766
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEecC
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDE 280 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~ 280 (491)
.+.... .-..++ +|++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|.
T Consensus 131 ti~~~~-----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-- 189 (268)
T 3nok_A 131 TTRYSG-----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-- 189 (268)
T ss_dssp EEECSS-----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEeCCC-----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--
Confidence 554321 111233 567888888889999999999999888776322 245778885
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEeccc-------------cCcEEEEEEcCCCCEEEEeeC
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~s~~~ 336 (491)
++.+++....+..|.+.|.. +++.+..+.-. .+-.+.|+++|+++.|++.+.
T Consensus 190 dG~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 56666666578899999987 66655544321 135689999998766655543
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.59 E-value=0.00026 Score=64.99 Aligned_cols=197 Identities=10% Similarity=0.066 Sum_probs=119.9
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~ 202 (491)
.....|.+..+++ +|+.+. ...|+..++..... .... .... .+..++|++.+..|..+. ..+.|..++...+.
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~-~~~~--~~~~-~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCE-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCee-EEee--cCCC-ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3455677777744 444443 34588888876532 2222 2222 478999998766666554 56789999987665
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 281 (491)
...+.... ......+++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+
T Consensus 107 ~~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 107 VEEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CEEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred ceEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 33221100 0134578888755545 444557889999987654433333344567899997545
Q ss_pred CCEEEEEeCC-CeEEEEecccccCCCceeeEec-cccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCC
Q 011179 282 GHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 282 ~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (491)
+.++++-... +.|..+++. +.....+. ........|+++|++..|..+ ...+.|..+|+..
T Consensus 171 g~ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 6566665555 788888874 22222222 223456889999876666554 4567788888764
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=3.2e-05 Score=73.35 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=96.0
Q ss_pred ceEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-C----eEEEEECC
Q 011179 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDVG 199 (491)
Q Consensus 126 ~i~~~~~s~-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~----~i~iw~~~ 199 (491)
....++++| ++..|.++...+.|+.+|+..+. +..+.. .......++|++++++|+++... + .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 456789998 45556666555889999998764 333222 22358899999999977666542 1 2333332
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEE
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCF 277 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~ 277 (491)
.+.......+.. ......++++| ++.++++-..++.|+.++...+....... ........++|
T Consensus 213 ~g~~~~~~~l~~---------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 213 ESGFKVITELTK---------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp GGTSCSEEEEEE---------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred CCceeeeeeecc---------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 232211111100 01355688999 67766666678899999998776522222 22245688999
Q ss_pred ecCCCC-EEEEEeCCCeEEEEecc
Q 011179 278 GDESGH-LIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 278 ~~~~~~-~l~s~~~dg~i~iwd~~ 300 (491)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 7 7788 55555667889998865
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.55 E-value=0.00046 Score=62.80 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=144.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeec-CCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~ 202 (491)
...+.++.|.+++..+++ +..|.| +...+.|+........ ......+.++.|.+ +..+ .++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence 347999999988887775 467765 3444545333332221 12234688999976 4444 4455664443 333333
Q ss_pred cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEecCC
Q 011179 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~ 281 (491)
.-....... .+...+..+.+.+++..++++ .+|.|+. ..+.++ ...........+..+.+. ++
T Consensus 110 tW~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~-~~ 173 (327)
T 2xbg_A 110 SWSQIPLDP-------------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS-PS 173 (327)
T ss_dssp SCEECCCCT-------------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC-TT
T ss_pred CceECcccc-------------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEc-CC
Confidence 211111100 011246677777777655555 4564433 222232 222233455678899997 56
Q ss_pred CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccc
Q 011179 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
+.+++.+...+..+-+|-. ....+.+. ......+..+.+.+++++++ .+.+|.+++.+.....
T Consensus 174 ~~~~~~g~~G~~~~S~d~g--G~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~------------ 236 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPG--QTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE------------ 236 (327)
T ss_dssp SCEEEEETTSSEEEEECTT--CSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE------------
T ss_pred CcEEEEECCCcEEEEeCCC--CCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC------------
Confidence 7777766554444444421 01222221 23456788899999887654 4567777665321100
Q ss_pred eeeeeeecCCCCCccccCCCCceEEEEeCC--ceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeec--
Q 011179 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 437 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 437 (491)
.|. .+... .....+.. +.+.+++.+++++. +|.| ++....|+.-..+.
T Consensus 237 tW~----------------------~~~~~~~~~~~~~~~----v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~ 288 (327)
T 2xbg_A 237 NWG----------------------ELLSPLRRNSVGFLD----LAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV 288 (327)
T ss_dssp EEC----------------------CCBCTTSSCCSCEEE----EEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGG
T ss_pred eeE----------------------eccCCcccCCcceEE----EEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCcc
Confidence 000 00000 00001111 22344666666554 6666 34445555444343
Q ss_pred -cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcC
Q 011179 438 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 -~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~ 469 (491)
.....+.++.|.+++ .++.++.+|.|.-++-
T Consensus 289 ~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 234568889997555 4667778998877764
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.55 E-value=2.6e-06 Score=85.93 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=73.5
Q ss_pred EEEECC-CCCeEEEEECCC-----------eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCE
Q 011179 174 DTSLSP-DQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 174 ~~~~sp-~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~ 241 (491)
..++.| +++.++.|+.+. .+.+||..+++.......... +.....++++..+++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------------~~~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------------HDMFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------------CCCSSCEEEECTTSCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-------------CCCccccccCCCCCCE
Confidence 456667 888888887543 688999998876554332211 1112335677889999
Q ss_pred EEEEeC-CCeEEEEECCCCeeeEEEeccCC-CeeEEEEecCCCCEEEEEe-CC-----CeEEEEecc
Q 011179 242 LVAGSS-DDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGS-DD-----NLCKVWDRR 300 (491)
Q Consensus 242 l~~~~~-dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~ 300 (491)
+++|+. +..+.+||..+++....-..+.. .-.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 257 yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 999884 45799999988765432211222 22334443 5788999988 34 468999986
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=4e-05 Score=78.37 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=93.2
Q ss_pred eEEEEEEC-CCCCeEEEEEC-CC----eEEEEECCCC-ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE
Q 011179 171 TVTDTSLS-PDQRHLVYASM-SP----IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 171 ~v~~~~~s-p~~~~l~~~~~-d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~ 243 (491)
.+...+|| |||++||.+.. +| .|+++|+.++ +.... .+. .....++|+|||+.|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~-----------------~~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS-----------------GTNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE-----------------EECSCCEECSSTTEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc-----------------CceeeEEEecCCCEEE
Confidence 68889999 99999987654 22 5999999988 52110 010 0223578999999888
Q ss_pred EEeCC-----CeEEEEECCCCee--eEEEe-ccCCCeeEEEEecCCCCEEEEEeC---CCeEEEEecccccCCCce-eeE
Q 011179 244 AGSSD-----DCIYVYDLEANKL--SLRIL-AHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP-AGV 311 (491)
Q Consensus 244 ~~~~d-----g~i~vwd~~~~~~--~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~-~~~ 311 (491)
....+ ..|+++++.++.. ...+. ........+.|+ +++++|+..+. ...|.++|+.... ... +..
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~--~~~~~~~ 313 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGN--AHNTLEI 313 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCT--TCCCEEE
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCC--CCceeEE
Confidence 77665 3688999987642 22222 223456678898 77887776552 3467788876221 122 123
Q ss_pred ec-cccCcEEEEEEcCCCCEEEEeeCC--C--cEEEEeCC
Q 011179 312 LM-GHLEGITFIDSRGDGRYLISNGKD--Q--AIKLWDIR 346 (491)
Q Consensus 312 ~~-~~~~~i~~~~~~~~~~~l~s~~~d--g--~i~iwd~~ 346 (491)
+. .......++.|+.++.+++....+ + .|..+|+.
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 32 334455666655444444444433 2 46666654
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=2.2e-05 Score=74.48 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=96.8
Q ss_pred eEEEEEECC-CCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 011179 171 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 248 (491)
Q Consensus 171 ~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d- 248 (491)
....++++| ++..|.++...+.|+.+|..++....+... ......++|++++++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----------------LSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----------------CSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----------------CCCcceEEEeCCCCEEEEEeCCC
Confidence 457789998 466666666558899999887665433220 1157889999999966666542
Q ss_pred C----eEEEEECCCCeee--EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-cccCcEEE
Q 011179 249 D----CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 321 (491)
Q Consensus 249 g----~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~ 321 (491)
+ .+.+++.. +... ..+. .......+++.|.++.++++-..++.|..++.. ......... +....-..
T Consensus 201 ~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 201 NNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEE
T ss_pred CcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCccee
Confidence 1 34444433 2221 2222 234567788874478877777778899999985 222211111 11234678
Q ss_pred EEEcCCCCEEE-EeeCCCcEEEEeCCC
Q 011179 322 IDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 ~~~~~~~~~l~-s~~~dg~i~iwd~~~ 347 (491)
++|+|+|++|+ +-...+.|..++...
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999999554 445667898887653
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00083 Score=60.73 Aligned_cols=184 Identities=10% Similarity=0.008 Sum_probs=109.2
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCC----ccccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEI 212 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~~~~ 212 (491)
+|+.+.. ..|+..|+.+....... . . ...+..++|++.+..|..+. ..+.|..+++.+. ...... .
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~-~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~-- 73 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--P-N-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--S-- 73 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--C-S-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--C--
T ss_pred EEEEECC-CeEEEEECCCcceEehh--c-C-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--e--
Confidence 3444433 46888999876433221 1 1 22578999998776666554 4688999998752 111110 0
Q ss_pred cccccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC
Q 011179 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 291 (491)
.+ -.....+++.+.+..|+ +-...+.|.++++........+.........+++.|.++.++++....
T Consensus 74 -~~-----------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 74 -RD-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp -SS-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred -CC-----------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 00 01346788887555454 445678999999876544333333445678999974455555554333
Q ss_pred -CeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 011179 292 -NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (491)
Q Consensus 292 -g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (491)
+.|...++. +.....+ ...-.....+++++++..|+.+. ..+.|..+|+..
T Consensus 142 ~~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 142 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 678888874 3333222 22335578999998776665554 567899999864
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.00031 Score=65.52 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=116.5
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~ 204 (491)
.-.|.+..+++ +|+.+. ...|+..++...... .+. ... ..+..++|++.+..|..+. ..+.|..++...+...
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~-~~~--~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT-LLL--NNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCE-EEE--CSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEE-EEe--cCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 34566666644 444443 356888888765322 221 122 2478999998766665554 5678999998766432
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCC
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 283 (491)
.+.... + .....+++.+.+..| ++-...+.|.+.++........+.........+++.|.++.
T Consensus 152 ~~~~~~-----~-----------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 152 EVVSTG-----L-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEECSS-----C-----------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEeCC-----C-----------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 221100 0 034567888755545 44455678999988765443333334456789999744555
Q ss_pred EEEEEeCC-CeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCC
Q 011179 284 LIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (491)
++++-... +.|..+++. +.....+ .........|+++|++..|+.+ ...+.|..+|+..
T Consensus 216 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 55555445 678888874 2222222 2233456889999866655544 4567788888764
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=0.00014 Score=68.94 Aligned_cols=155 Identities=12% Similarity=0.151 Sum_probs=92.7
Q ss_pred eEEEEEECCC--CCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 011179 171 TVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~~~~sp~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d 248 (491)
....++|+|+ ...|..+...+.|+.++..++......... .....++++++|+ |+++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~-----------------~~P~giavd~dG~-lyVad~~ 201 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI-----------------GQCADVNFTLNGD-MVVVDDQ 201 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC-----------------SCEEEEEECTTCC-EEEEECC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC-----------------CCccEEEECCCCC-EEEEcCC
Confidence 4678999995 445555544488999999877765443210 1578999999999 5555432
Q ss_pred C-----eEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--cccCcEEE
Q 011179 249 D-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITF 321 (491)
Q Consensus 249 g-----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~ 321 (491)
+ .+...+...+...............+++.+.+++++++-..++.|+.+|.. .+.....+. +....-..
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~----~g~~~~~~~~~~~~~~~~~ 277 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA----TGTLTEEEVMMDTKGSNFH 277 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT----TCCEEEEEEECSCCSSCEE
T ss_pred CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC----CCeEEEEEeccCCCCCccc
Confidence 1 233343322211011112234557788864377777776678889999875 333311211 11222346
Q ss_pred EEEcCCCCEEEE-eeCCCcEEEEeCCC
Q 011179 322 IDSRGDGRYLIS-NGKDQAIKLWDIRK 347 (491)
Q Consensus 322 ~~~~~~~~~l~s-~~~dg~i~iwd~~~ 347 (491)
++|+|+++.|+. -...+.|..+++..
T Consensus 278 ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 999999995554 44567899988753
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00023 Score=61.49 Aligned_cols=202 Identities=13% Similarity=0.118 Sum_probs=123.2
Q ss_pred ecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC
Q 011179 228 FGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 305 (491)
..+..++|+|++..|+ +...++.|...|.. ++.+.++. .-......|++. .++.++++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~- 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSE- 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCC-
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCe-
Confidence 3799999999766554 57778899999998 77777764 223578889996 6676666666778888888752210
Q ss_pred CceeeEe------ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 306 GKPAGVL------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 306 ~~~~~~~------~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
...+... .........++|+|.++.|+++.......+|.+......
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~---------------------------- 155 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS---------------------------- 155 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS----------------------------
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC----------------------------
Confidence 0111111 123455789999999987777776655566665421000
Q ss_pred CCCceEEEEeC-----CceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCC---------CCeee
Q 011179 380 PCDQSVATYKG-----HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRD 445 (491)
Q Consensus 380 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~ 445 (491)
..+..... ...........+.|. .+++++.......|.++|.. |+.+..+.-.. ...-.
T Consensus 156 ---~~l~i~~~~~~~~~~~~~d~S~l~~dp~---tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 156 ---NELHISKDKALQRQFTLDDVSGAEFNQQ---KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ---SCCEEEECHHHHHTCCSSCCCEEEEETT---TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred ---CceeeecchhhccccccCCceeEEEcCC---CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 00000000 000011223334443 56677777778889999964 66655543211 25678
Q ss_pred eEecCCCCeEEEEeCCCcEEEEc
Q 011179 446 CSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 446 ~~~sp~~~~l~s~~~Dg~v~iw~ 468 (491)
++|.++|++.++ +.-+.++++.
T Consensus 229 ia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 229 VAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEECCCCCEEEE-cCCceEEEEE
Confidence 999999985555 6666666554
No 278
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.41 E-value=0.00086 Score=58.98 Aligned_cols=267 Identities=10% Similarity=0.147 Sum_probs=161.4
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCC
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+..|.|.|+.++..+.+.. -..+ +.-.+|..+.||.-. ...+.|+|+++........+.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp--i~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e------------- 107 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP--ISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 107 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE--CCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCEEEEEECCCCCCccccc--cccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-------------
Confidence 3478899998864433221 1222 244589998888765 6899999999987766655443
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEecCCCCEEEEEeC-------CC
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGSD-------DN 292 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~-------dg 292 (491)
.|.--.|-.+.. |+..+ +..|+-|+++.. .+.+.+..|. ..|.....+ ++.++++..+- .|
T Consensus 108 ----~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 108 ----DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp ----CEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEE
T ss_pred ----ccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCccce
Confidence 577777875554 55544 456999999753 4555554442 355555554 66676665442 36
Q ss_pred eEEEEecccccCCCceeeEeccccCcEEEEEEcCC---CCEEEEeeC---CCcEEEEeCCCCC-CcccccCCCccceeee
Q 011179 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK---DQAIKLWDIRKMS-SNASCNLGFRSYEWDY 365 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 365 (491)
.+.+|..+ .+.-+.+.+|......+.+..+ ..+++.+.. .+.++|.++.... .... .....
T Consensus 181 ~mQLYS~e-----r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~-------f~kk~ 248 (365)
T 2xzh_A 181 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP-------FPKKA 248 (365)
T ss_dssp EEEEEETT-----TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC-------CCCEE
T ss_pred eEEEEeec-----ccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC-------ccccc
Confidence 78899874 5566777888665544443322 123443333 2578898885531 1100 00001
Q ss_pred eeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeee
Q 011179 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
..+.++|+.. ..+..++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 249 vdi~fppea~----------------------~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 249 VDVFFPPEAQ----------------------NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEECCCTTCT----------------------TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ceeeCCcccc----------------------CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 1111222110 011112234445678888899999999999999999888777778877
Q ss_pred eEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 446 CSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 446 ~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+-+....-++.....|.|.--.++..
T Consensus 307 ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 307 TAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred ecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 666655555666668887766665543
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00059 Score=62.65 Aligned_cols=199 Identities=9% Similarity=-0.025 Sum_probs=116.8
Q ss_pred cEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCc
Q 011179 229 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 307 (491)
.+..++|++....|+.. ...+.|+.+++........+.........+++.+.+++++++-...+.|.+.++. ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~ 149 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAH 149 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCS
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC----CCc
Confidence 47889999766655554 4678899999987654443333334567888864466666777777899999985 222
Q ss_pred eeeEeccccCcEEEEEEcCCCCEEEEe-eCC-CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceE
Q 011179 308 PAGVLMGHLEGITFIDSRGDGRYLISN-GKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 308 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
....+.........++++|.+..|+.. ... +.|..+++.....
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------- 194 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------- 194 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----------------------------------
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----------------------------------
Confidence 222222333556889999865555444 344 6788777754211
Q ss_pred EEEeCCceeEeeEEEEecccccCCCcEEEEE-ecCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcE
Q 011179 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v 464 (491)
..+-... . .....++++|++..|+.+ ...+.|..+|+........+.........+++. .+.++++-...+.|
T Consensus 195 ~~~~~~~-~----~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 195 RIIADTH-L----FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp EESCCSS-C----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEECC-C----CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 1110000 0 111223556555555555 446789999986543333333334456778883 44455555566778
Q ss_pred EEEcCCCC
Q 011179 465 VRWEFPGN 472 (491)
Q Consensus 465 ~iw~~~~~ 472 (491)
...+...+
T Consensus 269 ~~~~~~~G 276 (349)
T 3v64_C 269 NSANKFTG 276 (349)
T ss_dssp EEEETTTC
T ss_pred EEEEccCC
Confidence 87774333
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.00021 Score=66.75 Aligned_cols=227 Identities=10% Similarity=-0.027 Sum_probs=130.1
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 261 (491)
+|+.+ ....|+.+++.......+.... ..+..++|++.+..|+.. ...+.|+.+++.....
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~-----------------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSC-----------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred eeEee-cCccceeeccCCCcEEEEecCC-----------------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 44443 3456888887765443222110 157789999765555544 4678899999987654
Q ss_pred eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-CC-Cc
Q 011179 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD-QA 339 (491)
Q Consensus 262 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d-g~ 339 (491)
...+.........+++.+..++++++-...+.|.+.++. .......+.........+++.|.+..|+... .. +.
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC----CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 443433334567788864456666676777888888875 2222222233335678899998766555444 33 56
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE-ec
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SH 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~ 418 (491)
|..+++.... ...+.... .. ....++++|++..|+.+ ..
T Consensus 227 I~r~~~dG~~-----------------------------------~~~~~~~~-~~----~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 227 IEASSMDGSG-----------------------------------RRIIADTH-LF----WPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEEEETTSCS-----------------------------------CEEEECSS-CS----CEEEEEEEGGGTEEEEEETT
T ss_pred EEEEeCCCCC-----------------------------------cEEEEECC-CC----CeeeEEEeCCCCEEEEEECC
Confidence 7777765411 11111000 01 11223455455555544 44
Q ss_pred CCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
.+.|..+|+........+.........+++ ..+.++++-...+.|..++...+
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 678999998654433333333445677888 34455566666778888874444
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=0.00022 Score=67.58 Aligned_cols=198 Identities=9% Similarity=0.023 Sum_probs=111.8
Q ss_pred ceEEEEEcCC--CCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC----e-EEEEEC
Q 011179 126 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----I-VHIVDV 198 (491)
Q Consensus 126 ~i~~~~~s~d--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~-i~iw~~ 198 (491)
.-..++|+|+ +..|..+...+.|+.++..++... .... .......++++++++ |..+...+ . +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Eeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4568999995 344555544488999999877433 2222 223588999999999 55544322 1 222222
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEE
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTV 275 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~ 275 (491)
. +.......... -.....++++| ++.++++-..++.|+.+|..++.....+.. ....-..+
T Consensus 215 ~-~~~~~~~~~~~---------------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 215 A-SGFTERLSLCN---------------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp G-GTTCCEEEEEE---------------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred C-CCeeccccccc---------------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 1 11110000000 01345688999 676555555678899999987765333321 12233469
Q ss_pred EEecCCCC-EEEEEeCCCeEEEEecccccCCCceeeEecc---------------ccCcEEEEEE---------cCCCCE
Q 011179 276 CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDS---------RGDGRY 330 (491)
Q Consensus 276 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~~~i~~~~~---------~~~~~~ 330 (491)
+|+ ++++ ++++-...+.|+.++.............+.+ .-..-..+++ .++|.+
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 997 7777 5555556788999886411000000111111 1123566888 677777
Q ss_pred EEEeeCCCcEEEEeC
Q 011179 331 LISNGKDQAIKLWDI 345 (491)
Q Consensus 331 l~s~~~dg~i~iwd~ 345 (491)
+++-...+.|+.++.
T Consensus 358 yvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEEECCCCEEEEECC
Confidence 777666778888874
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.0016 Score=61.04 Aligned_cols=184 Identities=10% Similarity=-0.008 Sum_probs=111.1
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCc----cccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT----MESLANVTEI 212 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~----~~~~~~~~~~ 212 (491)
+|+.+. ...|+..++........ . .. ...+..++|++.+..|..+. ..+.|+.+++.... ...+.. .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~-~--~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~- 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R- 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEE-E--CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--S-
T ss_pred eeEEec-cceeEEEccCCcceeEe-c--cc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--C-
Confidence 455443 46788889886533222 1 11 23588999998776666554 46788888886532 111110 0
Q ss_pred cccccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeC-
Q 011179 213 HDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD- 290 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~- 290 (491)
.......+++.+.+. +.++-...+.|.+.+++.......+.........|++.|..+.++++-..
T Consensus 157 -------------~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 157 -------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp -------------SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred -------------CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence 011567889988444 44455567889999998765544444444567899997445555554433
Q ss_pred CCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 011179 291 DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (491)
.+.|...++. +.....+ .........|++++++..|+.+. ..+.|..+|+..
T Consensus 224 ~~~I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 224 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp SCCEEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 3678888874 3222222 22335678999998777666554 456788888864
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.0014 Score=59.24 Aligned_cols=228 Identities=9% Similarity=0.005 Sum_probs=127.5
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCC---
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA--- 258 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~--- 258 (491)
+|+.+. ...|+..++.+.+...+.... ..+..++|++++..|+.+ ..++.|+.+++..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~-----------------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~ 64 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNL-----------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSC-----------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCC-----------------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence 344443 356888888876543322110 157789999876555554 4568999999876
Q ss_pred -CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 259 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 259 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
......+.........+++.+.+++++++-...+.|.+.++. .......+.........++++|.+..|+.+...
T Consensus 65 ~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp ---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC----CCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence 222222322234568889864456666666778899999975 222222222233567899999866655544432
Q ss_pred --CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 338 --QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 338 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
+.|...++.. .....+.... . .....+++++++..|+.
T Consensus 141 ~~~~I~~~~~dG-----------------------------------~~~~~~~~~~-~----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 141 TPAKIKKGGLNG-----------------------------------VDIYSLVTEN-I----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSCEEEEEETTS-----------------------------------CCEEEEECSS-C----SCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEcCCC-----------------------------------CCeEEEEECC-C----CCceEEEEeccCCEEEE
Confidence 5777777653 1111111110 0 11123355656666655
Q ss_pred Ee-cCCeEEEEECCCCcEEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 416 GS-HDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 416 ~~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+. ..+.|..+|+.......... ........+++. .+.++++-...+.|..++...+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 54 46789999986433222222 122345678885 35555565567788888865443
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00022 Score=67.78 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=94.7
Q ss_pred ceEEEEEcCC-CCEEEEE-EcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEE-------CCCCCeEEEEECCC-----
Q 011179 126 RAYVSQFSAD-GSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-------SPDQRHLVYASMSP----- 191 (491)
Q Consensus 126 ~i~~~~~s~d-g~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------sp~~~~l~~~~~d~----- 191 (491)
.-..|+|+|. +..|.++ ...+.|++.|+.++............-.....++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999993 4444444 44467999998887433322221112235899999 99999777776554
Q ss_pred --eEEEEECCC-Ccccc-c--cccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECC-------
Q 011179 192 --IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE------- 257 (491)
Q Consensus 192 --~i~iw~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~------- 257 (491)
.|.+++... +.... . ..+... . ....++++|+ +.++++-..++.|+.+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~------------~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY------------K---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE------------S---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CceEEEEecCCCCceeecccceeeccC------------C---CceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 255665433 22211 0 001000 0 3456788994 5555566678889999987
Q ss_pred CCee-----------eEEE-e-ccCCCeeEEEEecCCCCE-EEEEeCCCeEEEEecc
Q 011179 258 ANKL-----------SLRI-L-AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRR 300 (491)
Q Consensus 258 ~~~~-----------~~~~-~-~h~~~v~~~~~~~~~~~~-l~s~~~dg~i~iwd~~ 300 (491)
++.. ...+ . +.......|+|+ ++++. +++-+..+.|+.++..
T Consensus 285 tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence 5543 1122 1 223456899997 77885 4555567788887653
No 285
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.34 E-value=0.0016 Score=59.75 Aligned_cols=268 Identities=10% Similarity=0.155 Sum_probs=163.5
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCC
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+..|.|.|+.++..+.+... . .-+.-.+|..+.||.-. ..++.|+|+++........+.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceeccc--c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 34788999987644432211 1 12355789888888765 7899999999887766555433
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEecCCCCEEEEEe-------CCC
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DDN 292 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~-------~dg 292 (491)
.|.--.|-.+. .|+..+ +..|+-|++... .+.+.+..|. ..|.....+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 107 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp ----CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEE
T ss_pred ----CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccc
Confidence 45555666444 455554 457999999753 4455554442 455555554 6677766443 246
Q ss_pred eEEEEecccccCCCceeeEeccccCcEEEEEEcCCC---CEEEEeeCC---CcEEEEeCCCCCCcccccCCCccceeeee
Q 011179 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
.+.+|..+ .+.-+.+.+|......+.+..+. .+++.+... +.++|.++....... ..+.....
T Consensus 180 ~mQLYS~e-----r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~------~~f~kk~v 248 (494)
T 1bpo_A 180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN------QPFPKKAV 248 (494)
T ss_dssp EEEEEEST-----TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC------CCCCCEEE
T ss_pred eEEEeecc-----ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC------CCccceee
Confidence 78899874 55666778887766555543221 234444432 689999986531000 00000111
Q ss_pred eecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeeee
Q 011179 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 446 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 446 (491)
.+.++|+.. ..+..++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|...
T Consensus 249 dv~fppe~~----------------------~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 249 DVFFPPEAQ----------------------NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp ECCCCTTST----------------------TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred eeeCCcccc----------------------cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence 111222110 0111122345566788888999999999999999998887777788777
Q ss_pred EecCCCCeEEEEeCCCcEEEEcCCCC
Q 011179 447 SWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 447 ~~sp~~~~l~s~~~Dg~v~iw~~~~~ 472 (491)
+-+....-++.....|.|.--.++..
T Consensus 307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 307 APHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEETTTTEEEEEETTCEEEEEEECTT
T ss_pred cccCCCCcEEEEccCceEEEEEEccc
Confidence 77666666666668887766665543
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.30 E-value=0.0015 Score=58.88 Aligned_cols=187 Identities=10% Similarity=0.055 Sum_probs=108.2
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCccccccccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 216 (491)
+|+.+. ...|+..+++.......... .. ...+..++|.+.+..|..+ ...+.|..++...+.......... +
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVV-GG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----L 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEE-EE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----C
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEe-cC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----C
Confidence 344443 45789999886521111111 11 1257789999866555554 456789999987653211110000 0
Q ss_pred cccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCCeE
Q 011179 217 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC 294 (491)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i 294 (491)
.....+++.+.+..| ++-...+.|.++++........+.........+++.|..+.++++-. ..+.|
T Consensus 79 -----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 79 -----------LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp -----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred -----------CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 135568888754444 45456788999998765433333344456789999744454444432 35778
Q ss_pred EEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCC
Q 011179 295 KVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (491)
...++. +.....+ ...-..-..|+++|++..|+.+ +..+.|..+|+..
T Consensus 148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 888774 2222222 2223456789999976666554 4567799998864
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.00088 Score=59.56 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=108.6
Q ss_pred EEEEEcCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEE---CCCCCeEEEEE----------
Q 011179 128 YVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSL---SPDQRHLVYAS---------- 188 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~---sp~~~~l~~~~---------- 188 (491)
-+++|++....|..++ ..++|..|+...+..... .... .....+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 3678988666666665 789999999986533322 2221 11235689999 68887777543
Q ss_pred ---CCCeEEEEECC---CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCee
Q 011179 189 ---MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKL 261 (491)
Q Consensus 189 ---~d~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~ 261 (491)
.+..|..+|+. +++......+.....+..-.. ..-......++..++|+..++++.. +.|...+......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~---g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKA---GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHH---SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccc---cccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 25789999998 777655444332111100000 0001258899999999999988888 8888888765432
Q ss_pred eEEEec-----cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 262 SLRILA-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 262 ~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
..-... .....+.|++. +++++|++...+|.+..+|+.
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred eeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 211111 12236799997 778887777679999999987
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.0014 Score=62.39 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=98.1
Q ss_pred eEEEEEECCC-CCeEEEE-ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE-------cCCCCE
Q 011179 171 TVTDTSLSPD-QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGRE 241 (491)
Q Consensus 171 ~v~~~~~sp~-~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-------s~~~~~ 241 (491)
....|+|+|. ...|.++ ...+.|++.|.+++....+...... .......++| ++++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------------~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------------PTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------------SCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------------ccCCCcEEEEeecccccCCCCCE
Confidence 3678999983 4444444 4446799999988776554332110 1115888999 999997
Q ss_pred EEEEeCCC-------eEEEEECCC-Ceee-----EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecc-------c
Q 011179 242 LVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-------C 301 (491)
Q Consensus 242 l~~~~~dg-------~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~ 301 (491)
|+++...+ .|.+++... +... ..+.. -.....+++.|.++.++++-..++.|..+|+. .
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t 285 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence 77776554 366776444 2221 22222 22446778875577777788888999999986 2
Q ss_pred ccCC----------CceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCC
Q 011179 302 LNVK----------GKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIR 346 (491)
Q Consensus 302 ~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~ 346 (491)
.... ...+... +....-..|+|+|+|+.|+.+ .....|+.++..
T Consensus 286 g~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 286 GGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 2110 0011111 223445789999999965544 456678886654
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.004 Score=63.37 Aligned_cols=196 Identities=11% Similarity=-0.022 Sum_probs=110.8
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCCccccc
Q 011179 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~ 206 (491)
.|.+..+.. +|+.+ ....|+..++....... +. .. ...+..++|.+....|..+ ...+.|+.+++........
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~-l~--~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTS-LI--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEE-EE--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCccee-ee--cC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 344443332 44444 34468888887653222 21 12 2257889999866555544 4457888888875321000
Q ss_pred -cccccccccccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCE
Q 011179 207 -ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 284 (491)
..+.. . .......|++.+.++.|+. -...+.|.+.++........+.........|++.|..+.+
T Consensus 462 ~~~vi~--~-----------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 462 YDTVIS--R-----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp CEEEEC--S-----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred eeEEEe--c-----------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCE
Confidence 00000 0 0014557888887755554 4567899999998665443343444568899997444555
Q ss_pred EEEEeCC-CeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCC
Q 011179 285 IYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (491)
Q Consensus 285 l~s~~~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 347 (491)
+++-... +.|...++. +.....+ .........|++++.+..|+.+. ....|...++..
T Consensus 529 YwtD~g~~~~I~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEECSSSCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEecCCCCCeEEEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 5554333 678888874 3333333 23335678999997766665554 456788888865
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.10 E-value=0.0067 Score=56.74 Aligned_cols=228 Identities=9% Similarity=0.012 Sum_probs=129.5
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC--
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN-- 259 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~-- 259 (491)
+|+.+. ...|+..++.......+... ...+..++|++....|+... ..+.|+.+++...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-----------------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~ 146 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 146 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-----------------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC
Confidence 444443 46788888876654332211 11578999998666565554 5688999998752
Q ss_pred --eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEee-C
Q 011179 260 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-K 336 (491)
Q Consensus 260 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~ 336 (491)
.....+.........+++.+..++++++-...+.|.+.++. .......+.........|++.|.+..|+... .
T Consensus 147 ~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~----g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp -CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT----TCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC----CCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 22233333445678889864466677777778899999885 2222222323344578999999666555444 2
Q ss_pred -CCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEE
Q 011179 337 -DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 337 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.+.|...++.... ...+-... . .....+++++++..|+.
T Consensus 223 ~~~~I~~~~~dG~~-----------------------------------~~~~~~~~-l----~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 223 TPAKIKKGGLNGVD-----------------------------------IYSLVTEN-I----QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp SSCCEEEEETTSCS-----------------------------------CEEEECSS-C----SCEEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCc-----------------------------------cEEEEECC-C----CceEEEEEEeCCCEEEE
Confidence 3678777775421 11111000 0 11122355556666665
Q ss_pred Ee-cCCeEEEEECCCCcEEEeecc--CCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 416 GS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 416 ~~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
+. ..+.|..+|+........+.. .-.....+++. .+.++++-...+.|..++..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 54 467899999865433222222 22345577773 33455555566788888855544
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.10 E-value=0.0052 Score=55.39 Aligned_cols=224 Identities=10% Similarity=0.019 Sum_probs=128.5
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeee-EEEec
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLS-LRILA 267 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~-~~~~~ 267 (491)
...|+.+++..........+.. ...+..++|.+....|+ +-...+.|+.+++...... ..+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~---------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG---------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE---------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecC---------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 4678889987654211111111 11467899998655454 4456788999998776422 22222
Q ss_pred cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEee--CCCcEEEEe
Q 011179 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG--KDQAIKLWD 344 (491)
Q Consensus 268 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd 344 (491)
.-.....+++.+..++++++-...+.|.++++. +.....+ .........+++.|.+..|+... ..+.|...+
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 334567888864466676776777899999985 2222222 23345568899998765555554 246777777
Q ss_pred CCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE-ecCCeEE
Q 011179 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~ 423 (491)
+.... ...+-... ......+++++++..|+.+ +..+.|.
T Consensus 152 ~dG~~-----------------------------------~~~~~~~~-----l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 152 MDGSS-----------------------------------RFIIINSE-----IYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp TTSCS-----------------------------------CEEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCC-----------------------------------eEEEEECC-----CCCccEEEEeccCCEEEEEECCCCEEE
Confidence 65311 11111000 0112233566656555555 4467899
Q ss_pred EEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 424 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+|+........+.........+++.. +.++++-...+.|..++..+++.
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 999864333222333344567777753 34555555667888888765543
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.02 E-value=0.014 Score=57.82 Aligned_cols=203 Identities=9% Similarity=-0.023 Sum_probs=118.3
Q ss_pred CCceEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE-ECCCeEEEEECCCC
Q 011179 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~ 201 (491)
-.....++|++.+..|..+. ..+.|..++++........ ...+ -..+..+++.+.+..|..+ ...+.|.+.+++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34578899999777666554 4678888888754211222 2222 1358899999866655554 45689999998765
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEEEec
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 279 (491)
....+.. .. -.....+++.|.+.+|+.... .+.|...++............-...+.|++.+
T Consensus 117 ~~~~l~~-~~---------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~ 180 (619)
T 3s94_A 117 LRKVLFW-QE---------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 180 (619)
T ss_dssp SCEEEEC-SS---------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred CEEEEEe-CC---------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence 4322211 00 013567899997666666553 46788788765443333333445678999975
Q ss_pred CCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCC
Q 011179 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 280 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 350 (491)
.+++++++-...+.|...|+.. .....+ .+.......|++..+ .++++-...+.|...|..++..
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~dG-----~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLDG-----TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSSC-----CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred cCCEEEEEeCCCCeEEEecCCC-----CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 5566666656677888888852 111111 111112235666655 4455555677899888876554
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.99 E-value=0.0022 Score=57.62 Aligned_cols=193 Identities=13% Similarity=0.223 Sum_probs=117.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecC---CCC---EEEEEeC---CCeEEEEecccccCCCce
Q 011179 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE---SGH---LIYSGSD---DNLCKVWDRRCLNVKGKP 308 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~---~l~s~~~---dg~i~iwd~~~~~~~~~~ 308 (491)
....++.....+-+.+||+ +++.+..+.. +.++.+..-|. .++ ++++... +++|.+|++.. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp---~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG---KNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT---TTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC---CCCc
Confidence 3456666677788999999 7888777743 56777776521 111 3333333 57999997631 1122
Q ss_pred eeEecc------cc-CcEEEEEE--cCC-CC-EEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccc
Q 011179 309 AGVLMG------HL-EGITFIDS--RGD-GR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 309 ~~~~~~------~~-~~i~~~~~--~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
+..+.. .. ..+..+++ +|. ++ ++++...+|.+..|++........
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------------------ 168 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------------------ 168 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------------------
Confidence 333311 11 44556676 664 44 678888899999999853111000
Q ss_pred cCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECC-----CCcEEEeec-cC-CCCeeeeEe--
Q 011179 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-----SGEQVAALK-YH-TSPVRDCSW-- 448 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~~~~-- 448 (491)
..+.++++....... .| ...+....|+.+-++..|..++.. +++.+..+. ++ ...+..|++
T Consensus 169 ---~~~lVR~f~lgsq~E---gc----vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 169 ---SGKKVRAFKMNSQTE---GM----AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp ---EEEEEEEEECSSCEE---EE----EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred ---cceEEEEecCCCCcc---eE----EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 024556665544222 33 344467889999998778888855 345665553 22 246888888
Q ss_pred cCCCC-eEEEEe-CCCcEEEEcCC
Q 011179 449 HPSQP-MLVSSS-WDGDVVRWEFP 470 (491)
Q Consensus 449 sp~~~-~l~s~~-~Dg~v~iw~~~ 470 (491)
.++++ +|++++ .+..+.+||..
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 45666 555555 67899999986
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.93 E-value=0.0042 Score=55.79 Aligned_cols=193 Identities=15% Similarity=0.247 Sum_probs=114.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCC----CCe--EEEEE--C--CCeEEEEECC--CCc
Q 011179 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRH--LVYAS--M--SPIVHIVDVG--SGT 202 (491)
Q Consensus 135 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~--l~~~~--~--d~~i~iw~~~--~~~ 202 (491)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ ++. |+.++ . +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667889999999 6767766422 24555555542 322 33333 3 5789999774 443
Q ss_pred cccccccc-cccccccccccCCCCceecEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeeeEEEeccCC
Q 011179 203 MESLANVT-EIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHTS 270 (491)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~-------~~~~~~~~~~h~~ 270 (491)
........ ..... ...+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. .+
T Consensus 113 l~~i~~~~~pv~t~-----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs 180 (355)
T 3amr_A 113 LQSMTDPDHPIATA-----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS 180 (355)
T ss_dssp EEECSCTTSCEECC-----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred eeeccccccCcCCC-----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence 22221110 00000 014556677 664 44 68888889999999882 3345566643 45
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEeccccc-CCCceeeEec-ccc-CcEEEEEE--cCCCC-EEEEee-CCCcEEEE
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKGKPAGVLM-GHL-EGITFIDS--RGDGR-YLISNG-KDQAIKLW 343 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-~~~-~~i~~~~~--~~~~~-~l~s~~-~dg~i~iw 343 (491)
.+..+... +....|+.+-++.-|..++.+-.. ...+.+..+. ++. ..+..|++ .++++ +|++++ .+..+.+|
T Consensus 181 q~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 67788885 677788899988666666643111 1123343331 222 36778877 45555 566655 56789999
Q ss_pred eCC
Q 011179 344 DIR 346 (491)
Q Consensus 344 d~~ 346 (491)
|..
T Consensus 260 dr~ 262 (355)
T 3amr_A 260 DRQ 262 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 986
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.92 E-value=8.8e-05 Score=74.88 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=99.5
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCC----cccccccccccccccccc
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~ 219 (491)
.+.|++.++.+....... ... ..+..++|.+.+..|..+. ..+.|+.+++.+. ....+.. .+
T Consensus 385 ~~~I~~id~~~~~~~~~~---~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-----~~---- 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI---PNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RD---- 451 (699)
T ss_dssp TTC-CEECTTSCCEECCS---CCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-----SC----
T ss_pred ccceEEEeCCCCcceeee---ccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-----CC----
Confidence 457888888765332211 111 2466789998777666654 4578888888751 1111110 00
Q ss_pred ccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCC-CeEEEE
Q 011179 220 AADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW 297 (491)
Q Consensus 220 ~~~~~~h~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~iw 297 (491)
......+++.+.+..| ++-...+.|.++++........+.........|++.|..+.++++-... +.|.++
T Consensus 452 -------~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 452 -------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp -------C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred -------CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 0024457887544444 4444567899999876544333332334567888874455555544333 677777
Q ss_pred ecccccCCCceeeEe-ccccCcEEEEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q 011179 298 DRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRK 347 (491)
Q Consensus 298 d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~ 347 (491)
++. +.....+ .........|+|+|++..| ++-...+.|..+++..
T Consensus 525 ~~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 525 GLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 764 2222222 1222345679999875544 4545567899988864
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.91 E-value=0.00066 Score=60.35 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=106.7
Q ss_pred eEEEEEECCCCCeEEEEE-CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEE---cCCCCEEEEEe
Q 011179 171 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVAGS 246 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---s~~~~~l~~~~ 246 (491)
-..+++|.+....+..++ ..+.|..|+...+....+ .+.... . .......+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~----~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----S----NGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----C----SSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----c----cCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 345688987666666665 689999999876644333 221100 0 0001124678999 68877776543
Q ss_pred -------------CCCeEEEEECC---CCeeeEEEe--cc-----------CCCeeEEEEecCCCCEEEEEeCC-CeEEE
Q 011179 247 -------------SDDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLCKV 296 (491)
Q Consensus 247 -------------~dg~i~vwd~~---~~~~~~~~~--~h-----------~~~v~~~~~~~~~~~~l~s~~~d-g~i~i 296 (491)
.+..|..||+. +++.+.... .. ......++.. ++|+..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence 26789999999 777665443 11 1247888985 889999999888 88777
Q ss_pred EecccccCCCceeeEec------cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 297 WDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+.. ++.+..+. ...-..+.|+++|+|+.|++....+.|..+|+..
T Consensus 164 V~pd-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 VSAD-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTT-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeCC-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7763 33222221 1122366899999999988887799999999874
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.0098 Score=54.51 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=60.7
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~ 247 (491)
....++|.|+|++ +++...+.|.+++ +++...+..+.... ........++|+|+ +..|+++..
T Consensus 32 ~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~-----------~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYH-----------RGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEee-----------cCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4678999999984 4556679999998 44322211111000 01125788999998 555655543
Q ss_pred C------CeEEEEECCCCe-----eeE-EEe---ccCCCeeEEEEecCCCCEEEEEe
Q 011179 248 D------DCIYVYDLEANK-----LSL-RIL---AHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 248 d------g~i~vwd~~~~~-----~~~-~~~---~h~~~v~~~~~~~~~~~~l~s~~ 289 (491)
. +.|..++...+. .+. .+. ........++|. +++.++++.+
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 2 678888877542 111 122 111234689997 7787666643
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.015 Score=59.23 Aligned_cols=198 Identities=9% Similarity=0.007 Sum_probs=108.9
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q 011179 229 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 303 (491)
.+..++|.+....|+ +-...+.|+.+++... .....+.........|++.+..++++++-...+.|.+.++.
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--- 501 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--- 501 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---
Confidence 577899998555554 4445678999998753 22233333445677889864445666677778899999985
Q ss_pred CCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeC-C-CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCC
Q 011179 304 VKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 304 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
+.....+ .........|++.|.+..|+.... . +.|...++...
T Consensus 502 --G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------------------------- 547 (791)
T 3m0c_C 502 --GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------------------------- 547 (791)
T ss_dssp --SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--------------------------------
T ss_pred --CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--------------------------------
Confidence 3323333 233455789999997655555442 2 56777777541
Q ss_pred CCceEEEEeCCceeEeeEEEEecccccCCCcEEEEE-ecCCeEEEEECCCCcEEEeecc--CCCCeeeeEecCCCCeEEE
Q 011179 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVS 457 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s 457 (491)
....+.... .... ..+++++.+..|+.+ ...+.|..+++........+.. .-....+|++..+ .++++
T Consensus 548 ---~~~~lv~~~-l~~P----~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwt 618 (791)
T 3m0c_C 548 ---DIYSLVTEN-IQWP----NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWT 618 (791)
T ss_dssp ---CEEEEECSS-CSCE----EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEE
T ss_pred ---ceEEEEeCC-CCCc----eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEE
Confidence 111111111 0111 222444445555555 3456899999865443333332 1223456666332 33344
Q ss_pred EeCCCcEEEEcCCCC
Q 011179 458 SSWDGDVVRWEFPGN 472 (491)
Q Consensus 458 ~~~Dg~v~iw~~~~~ 472 (491)
-...+.|...+..++
T Consensus 619 D~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 619 DIINEAIFSANRLTG 633 (791)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred ECCCCEEEEEeCCCC
Confidence 444566777765444
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.84 E-value=0.0052 Score=54.93 Aligned_cols=188 Identities=17% Similarity=0.134 Sum_probs=96.8
Q ss_pred CCCEEEEEE-cC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-----CeEEEEECCCCc-
Q 011179 135 DGSLFVAGF-QA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT- 202 (491)
Q Consensus 135 dg~~la~~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~- 202 (491)
++.+++.|+ .+ ..+.+||..++.- .........+.....+. .+++.++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666776 33 3688999987732 22221111111112222 256777777754 468999998877
Q ss_pred --cccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEecc-CCCeeE
Q 011179 203 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAH-TSDVNT 274 (491)
Q Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h-~~~v~~ 274 (491)
.......+.. ...| ..+.+ +++.++.|+.+ ..+.+||..+.+....-... ...-.+
T Consensus 91 ~~W~~~~~~p~~----------r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 91 GVWYSVAPMNVR----------RGLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG 154 (301)
T ss_dssp CCCEEECCCSSC----------CBSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred CeeEECCCCCCC----------ccce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce
Confidence 4443222111 1112 11222 56777777643 46899999887754322211 111122
Q ss_pred EEEecCCCCEEEEEeCC-----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEe
Q 011179 275 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD 344 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd 344 (491)
++. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 155 ~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 155 LVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp EEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence 333 256677777654 45788887521 11112112111111222223 56677777764 3578888
Q ss_pred CCC
Q 011179 345 IRK 347 (491)
Q Consensus 345 ~~~ 347 (491)
+.+
T Consensus 229 ~~~ 231 (301)
T 2vpj_A 229 IRT 231 (301)
T ss_dssp TTT
T ss_pred CCC
Confidence 866
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.033 Score=55.32 Aligned_cols=186 Identities=9% Similarity=0.061 Sum_probs=113.4
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE-CCCeEEEEECCCCccccccccccccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 216 (491)
+|+.+ ....|+..++++...... ....+ -..+..++|++.+..|..+. .++.|..++++......+.... +
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-----~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-IPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-----L 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-CCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----C
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-EEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-----C
Confidence 45544 566899999986532222 12222 23578999999776666554 4688999988765432222110 0
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEE-eCCCeE
Q 011179 217 DFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLC 294 (491)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i 294 (491)
.....+++.+.+..|+. -...+.|.+.++........+...-.....|++.|..+.++++- +..+.|
T Consensus 80 -----------~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 80 -----------DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp -----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred -----------CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 13557888876555544 44568899999876543222323445678999975455555543 225677
Q ss_pred EEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCC
Q 011179 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (491)
...++. +.....+.........|++++++..|+.+ ...+.|..+|+..
T Consensus 149 ~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 149 DRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 777764 33333333344567899999976666555 4567788888865
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.77 E-value=0.0021 Score=57.52 Aligned_cols=146 Identities=17% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCeEEEEE-CC-----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 011179 180 DQRHLVYAS-MS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (491)
Q Consensus 180 ~~~~l~~~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----- 248 (491)
++..++.|+ .+ ..+.++|..+.+.......+.. ..+|. .+. .+++.++.|+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~----~~~--~~~~l~v~GG~~~~~~~ 77 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK----------RRYVA----SVS--LHDRIYVIGGYDGRSRL 77 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC----------CBSCE----EEE--ETTEEEEECCBCSSCBC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh----------hcccc----EEE--ECCEEEEEcCCCCCccC
Confidence 445566665 22 3688999888776544322211 01121 122 256677777754
Q ss_pred CeEEEEECCCCe---eeEEEec-cCCCeeEEEEecCCCCEEEEEeCC-----CeEEEEecccccCCCceeeEeccccCcE
Q 011179 249 DCIYVYDLEANK---LSLRILA-HTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 249 g~i~vwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+.+||..+.+ ....-.. ....-.+++. .++.+++.|+.+ ..+.+||+... ....+..+......-
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA 153 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc
Confidence 469999998876 4322111 1111122333 246677777654 35778887521 112222222111122
Q ss_pred EEEEEcCCCCEEEEeeCC-----CcEEEEeCCC
Q 011179 320 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (491)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 22222 56677777654 3477777765
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.75 E-value=0.0067 Score=54.27 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=95.3
Q ss_pred CCEEEEEEcC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC-----CeEEEEECCCCccccc
Q 011179 136 GSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESL 206 (491)
Q Consensus 136 g~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~~~~~ 206 (491)
+.+++.|+.+ ..+..||..++. ..........+..-..+.+ +++.++.|+.+ ..+.+||..+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 4556666643 358899988873 2222211111111112222 66777777754 3588999888776554
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEEec-cCCCeeEEEEecC
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILA-HTSDVNTVCFGDE 280 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~ 280 (491)
...+.. ...|. .+.+ +++.++.|+.++ .+.+||+.+.+....-.. ....-.+++. .
T Consensus 93 ~~~p~~----------r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~ 154 (302)
T 2xn4_A 93 ANMRDR----------RSTLG----AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--V 154 (302)
T ss_dssp CCCSSC----------CBSCE----EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--E
T ss_pred CCCCcc----------ccceE----EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--E
Confidence 432211 11121 1222 567777777553 588999988765432111 1111123333 2
Q ss_pred CCCEEEEEeCC-------CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCCC
Q 011179 281 SGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRK 347 (491)
Q Consensus 281 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 347 (491)
++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 45677776643 35778887621 11122112111112222223 567777777643 577888765
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.75 E-value=0.0088 Score=54.84 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEECCC---CCeEEEEEC-C-----CeE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYASM-S-----PIV 193 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~---~~~l~~~~~-d-----~~i 193 (491)
.-..++|.|||++++ +..+|.|++++ .+.. ..... ..........++|+|+ +..|.++.. . +.|
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 457899999999555 45679999998 4432 21111 1112346889999998 544544332 2 578
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN- 259 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-------------dg~i~vwd~~~~- 259 (491)
..++...+.......+ ... ++......|. ...++|.|||.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l---~~~--~p~~~~~~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 108 VRLRHLGERGVLDRVV---LDG--IPARPHGLHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEECSSCEEEEEEE---EEE--ECCCTTCCCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEeCCCCcCceEEE---EEe--CCCCCCCCcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 8888765422111000 000 0100111232 357999999975555332 256666665431
Q ss_pred -----------eeeEEE-eccCCCeeEEEEecCCCCEEEEEeC
Q 011179 260 -----------KLSLRI-LAHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 260 -----------~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
.....+ .++ .....++|.|.+++++++-..
T Consensus 181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC
T ss_pred CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC
Confidence 011111 133 235678897436776665443
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.74 E-value=0.035 Score=59.13 Aligned_cols=191 Identities=12% Similarity=0.115 Sum_probs=102.9
Q ss_pred EEEEcCC-CCEEEEEe----------CCCeEEEEECCCCeeeEEE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEec
Q 011179 232 SLKFSTD-GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 232 ~~~~s~~-~~~l~~~~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 299 (491)
.+.|..+ ..+|++|+ ..|.|++|++..++..... ....++|++++-. +|.++++. ..+|++|++
T Consensus 836 ~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l 911 (1158)
T 3ei3_A 836 SCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEW 911 (1158)
T ss_dssp EECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEE
T ss_pred EEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEEC
Confidence 3344433 46888886 3588999999755433222 2456889998864 45444433 469999998
Q ss_pred ccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccC
Q 011179 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
. ..+.+..-..+-..|..+.....++++++|..-..|.++..+...
T Consensus 912 ~----~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~------------------------------ 957 (1158)
T 3ei3_A 912 T----TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME------------------------------ 957 (1158)
T ss_dssp C----TTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT------------------------------
T ss_pred C----CCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC------------------------------
Confidence 6 333232111111122222222346788888887777776544311
Q ss_pred CCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCC-------c-EEEeeccC-CCCeeeeE---
Q 011179 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-------E-QVAALKYH-TSPVRDCS--- 447 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~-~~~~~~~h-~~~v~~~~--- 447 (491)
..+..+........+..+.+- +...++.+..+|.+.++..... . ....-..| ...|+++.
T Consensus 958 ---~~L~~~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~s 1029 (1158)
T 3ei3_A 958 ---GNFEEIARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGS 1029 (1158)
T ss_dssp ---TEEEEEEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECC
T ss_pred ---CeEEEEEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeee
Confidence 222222222222222222221 2346777888999999876541 1 21111222 34566664
Q ss_pred ecCCC---------CeEEEEeCCCcEEEEc
Q 011179 448 WHPSQ---------PMLVSSSWDGDVVRWE 468 (491)
Q Consensus 448 ~sp~~---------~~l~s~~~Dg~v~iw~ 468 (491)
+.+.+ ..++-++.+|.|.+.-
T Consensus 1030 l~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1030 LVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp SCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred eecCCCccccccccceEEEEecCCEEEEEE
Confidence 33322 3577788899987653
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.73 E-value=0.072 Score=56.77 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=103.5
Q ss_pred CCCceEEEEEcCC------CCEEEEEEc-CCeEEEEECCCCeEEEEEeecC-CCceeEEEEEECCCCCeEEEEECCCeEE
Q 011179 123 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 123 h~~~i~~~~~s~d------g~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 194 (491)
....|.|+++.|. ++++|+|.. |++|+|+++.+-+.+....... .....|.-+.+ ....+|..|-.||.+.
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF 630 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence 3568999999864 369999997 9999999998765554433321 12223433444 2346788899999887
Q ss_pred EEECC--CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 011179 195 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 272 (491)
-+.++ ++.........- | ..++.=..+...+..-+.+..+....+|.-. ++.... .-....+
T Consensus 631 ~~~~d~~tg~l~d~r~~~L-------------G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v 694 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTL-------------G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV 694 (1158)
T ss_dssp EEEECTTTCCEEEEEEEEC-------------C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred EEEEcCCCCccccceeEEc-------------C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence 66554 343321111000 0 0133333344444433333334444445433 332221 1112234
Q ss_pred eE-EEEecCC-CCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 273 NT-VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 273 ~~-~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
.. ..|+... .+-++..+ ++.++|..+... ..-.+..+ .-...+..++++|+.+.++.+..+
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTV-PLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEe
Confidence 33 3454222 34455443 456999887532 22222222 234678899999988877766543
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.022 Score=56.46 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=102.2
Q ss_pred cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-CCeEEEEECCCCccccccccccccccccccccC
Q 011179 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 144 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
....|+..++......... ..... ..+..++|++.+..|..+.. .+.|..++++........ +. .+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~-~~~~~-~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-~~---~~------- 82 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATI-VVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VV---SG------- 82 (619)
T ss_dssp CSSBEEEECCC----------CBCC-SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-EC---SS-------
T ss_pred ccccEEEEeCCCCcceEEE-EEcCC-CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-Ee---CC-------
Confidence 3557888888754211111 11222 24788999997777766654 578888888754211100 00 00
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe-CCCeEEEEecc
Q 011179 223 DGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRR 300 (491)
Q Consensus 223 ~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~ 300 (491)
-.....+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++++-. ..+.|...++.
T Consensus 83 ----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 83 ----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp ----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 0157789999866555554 56789999999765433333244456788999744455555432 23566666653
Q ss_pred cccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEe-eCCCcEEEEeCCC
Q 011179 301 CLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 347 (491)
+.....+ .........|++++++..|+.+ ...+.|...|+..
T Consensus 159 -----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 159 -----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp -----SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred -----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 3322222 2233456889999876655544 4556788888765
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.70 E-value=0.05 Score=53.99 Aligned_cols=227 Identities=8% Similarity=0.002 Sum_probs=130.6
Q ss_pred eEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 011179 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 261 (491)
+|+.+ ....|+..++++........+... ..+..++|++.+..|+.+ ..++.|+.+++.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~---------------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~ 71 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGV---------------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSC---------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCC---------------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc
Confidence 45544 467899999986543222221111 157789999866665554 4578899999876544
Q ss_pred eEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeC--CC
Q 011179 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK--DQ 338 (491)
Q Consensus 262 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~--dg 338 (491)
...+.........+++....++++++-...+.|.+.++. +.....+ .........|++.|....|+.... .+
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 333433334577888864456666666677899999985 2222222 233355689999986555554442 45
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS- 417 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~- 417 (491)
.|...++.... ...+-.. .. ....++++++++.|+.+.
T Consensus 147 ~I~r~~~dG~~-----------------------------------~~~l~~~--~~----~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 147 KIDRAAMDGSE-----------------------------------RTTLVPN--VG----RANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEEEEETTSCS-----------------------------------CEEEECS--CS----SEEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCc-----------------------------------eEEEECC--CC----CcceEEEccccCEEEEEEC
Confidence 67777665421 1111110 01 112234555656565554
Q ss_pred cCCeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
..+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..++.
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 467899999865433 23333334456788764 3444444457788888865554
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.70 E-value=0.0068 Score=54.22 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=110.5
Q ss_pred CCeEEEEECC----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeE
Q 011179 181 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCI 251 (491)
Q Consensus 181 ~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i 251 (491)
+..++.|+.+ ..+.++|..+.+.......+.. ..+|. .+.+ ++..++.|+.+ ..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~----~~~~--~~~lyv~GG~~~~~~~~~~ 79 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR----------RCRAG----MVYM--AGLVFAVGGFNGSLRVRTV 79 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC----------CBSCE----EEEE--TTEEEEESCBCSSSBCCCE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc----------cccce----EEEE--CCEEEEEeCcCCCccccce
Confidence 3445555543 3578888887765444322211 11121 1222 66777777754 358
Q ss_pred EEEECCCCeeeEEEecc-CCCeeEEEEecCCCCEEEEEeCCC-----eEEEEecccccCCCceeeEeccccCcEEEEEEc
Q 011179 252 YVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (491)
.+||..+.+....-... ...-.+++. .++.+++.|+.++ .+.+||+... ....+..+.........+.+
T Consensus 80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~- 154 (302)
T 2xn4_A 80 DSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV- 154 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE-
T ss_pred EEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE-
Confidence 99999887654322111 111122333 2467777777653 4667777521 11112112111111122222
Q ss_pred CCCCEEEEeeCC-------CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeE
Q 011179 326 GDGRYLISNGKD-------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 326 ~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
++++++.|+.+ ..+.+||+.+.. |.. ...........
T Consensus 155 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------------W~~----------------------~~~~p~~r~~~ 198 (302)
T 2xn4_A 155 -GGLLYAVGGYDVASRQCLSTVECYNATTNE-------------WTY----------------------IAEMSTRRSGA 198 (302)
T ss_dssp -TTEEEEECCEETTTTEECCCEEEEETTTTE-------------EEE----------------------ECCCSSCCBSC
T ss_pred -CCEEEEEeCCCCCCCccccEEEEEeCCCCc-------------EEE----------------------CCCCccccccc
Confidence 56666766543 347777776521 110 00000000000
Q ss_pred EEEecccccCCCcEEEEEecC-----CeEEEEECCCCcEEEeeccCCCCeeeeEecCCCCeEEEEeCCC-----cEEEEc
Q 011179 399 RCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWE 468 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg-----~v~iw~ 468 (491)
.+. .-++++++.|+.+ ..+.+||+.+.+-...-..........+..-++++++.|+.++ .|.+||
T Consensus 199 ~~~-----~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 199 GVG-----VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp EEE-----EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred cEE-----EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence 000 0156777777664 3699999987654322111111111112222677788887654 488888
Q ss_pred CCCC
Q 011179 469 FPGN 472 (491)
Q Consensus 469 ~~~~ 472 (491)
+...
T Consensus 274 ~~~~ 277 (302)
T 2xn4_A 274 PTTD 277 (302)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8765
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.67 E-value=0.007 Score=54.24 Aligned_cols=144 Identities=12% Similarity=0.162 Sum_probs=74.7
Q ss_pred CeEEEEEC--CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 011179 182 RHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYD 255 (491)
Q Consensus 182 ~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd 255 (491)
.+++.|+. ...+.+||..+++...+...+... .+|. .+. -++..++.|+.+ ..+.+||
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~----~~~--~~~~lyv~GG~~~~~~~~~~~~d 76 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR----------RDAA----CVF--WDNVVYILGGSQLFPIKRMDCYN 76 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC----------BSCE----EEE--ETTEEEEECCBSSSBCCEEEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCccc----------ceeE----EEE--ECCEEEEEeCCCCCCcceEEEEe
Confidence 34555654 357899999888765543322211 1121 122 256677777754 6799999
Q ss_pred CCCCeeeEEEeccC-CCeeEEEEecCCCCEEEEEeCC------CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCC
Q 011179 256 LEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 256 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 328 (491)
..+++....-.... ..-.+++. .++.+++.|+.+ ..+.+||.... ....+..+......-..+.+ ++
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~ 150 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGMVEA--NG 150 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TT
T ss_pred CCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEEEEE--CC
Confidence 99887543322111 11122233 256677777765 45788887621 11111111111111122222 56
Q ss_pred CEEEEeeC---------CCcEEEEeCCC
Q 011179 329 RYLISNGK---------DQAIKLWDIRK 347 (491)
Q Consensus 329 ~~l~s~~~---------dg~i~iwd~~~ 347 (491)
++++.|+. -..+.+||+.+
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCC
Confidence 66666653 23477787765
No 310
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.67 E-value=0.013 Score=53.07 Aligned_cols=192 Identities=12% Similarity=0.043 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
+.++.+.+.+++..++++ .+|.|.. ..+.|........ .....+..+.+.|++.+++++...+..+-+|-......
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~--~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ--EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC--SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec--CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 457888888888766665 4554322 2333433433322 23346889999999887766644333333332111111
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-c---cCCCeeEEEEecC
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTSDVNTVCFGDE 280 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---h~~~v~~~~~~~~ 280 (491)
.. .. .....+..+.+.++++.+ .++.+|.+++.+...++.-..+. . +...+..+.+. +
T Consensus 198 ~~-~~---------------~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~-~ 259 (327)
T 2xbg_A 198 PH-NR---------------TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR-T 259 (327)
T ss_dssp EE-EC---------------CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES-S
T ss_pred EC-CC---------------CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec-C
Confidence 11 00 011267888999998755 55567888777533333222221 1 22357888886 5
Q ss_pred CCCEEEEEeCCCeEEEEecccccCCCceeeEec---cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 011179 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 281 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 345 (491)
++.+++++. +|.+. +... .+..-..+. .....+..+.|.+++ .+++++.+|.|.-++-
T Consensus 260 ~~~~~~~g~-~g~i~-~S~D----gG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEVWLAGG-AGALL-CSQD----GGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEEEEES-TTCEE-EESS----TTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCEEEEEeC-CCeEE-EeCC----CCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 566666554 66663 3332 222222222 223567788887555 4666678888776654
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.63 E-value=0.014 Score=52.15 Aligned_cols=186 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred CEEEEEEc--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC----CeEEEEECCCCccccccccc
Q 011179 137 SLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 137 ~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~ 210 (491)
.+++.|+. ...+.+||..++.- ..+......+..-..+.+ +++.++.|+.+ ..+.+||..+++.......+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSW-TDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEE-EECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCE-ecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35556654 35789999988732 222221111212222222 66777777754 67889999888765443322
Q ss_pred cccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEecc-CCCeeEEEEecCCCC
Q 011179 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGH 283 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~ 283 (491)
.. ..+| ..+.+ +++.++.|+.+ ..+.+||..+.+....-... ...-.+++. .++.
T Consensus 90 ~~----------r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 151 (306)
T 3ii7_A 90 TP----------RDSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL 151 (306)
T ss_dssp SC----------CBSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred cc----------ccce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE
Confidence 11 1112 11222 67777777755 45999999888754321111 111122333 2456
Q ss_pred EEEEEeC---------CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCCC
Q 011179 284 LIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (491)
+++.|+. -..+.+||+... ....+..+......-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 7777653 345788887622 11122111111111222222 56677777654 3577888766
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.61 E-value=0.011 Score=52.98 Aligned_cols=190 Identities=12% Similarity=0.054 Sum_probs=97.4
Q ss_pred cCCCCEEEEEEcC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC----C-----CeEEEEECC
Q 011179 133 SADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-----PIVHIVDVG 199 (491)
Q Consensus 133 s~dg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d-----~~i~iw~~~ 199 (491)
.-++.+++.|+.+ ..+.+||..++.- ..+......+..-..+.+ +++.++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTW-LRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeE-eECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3456777777642 3689999987732 222111111111122222 5677777765 2 468899998
Q ss_pred CCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEec-cCCCee
Q 011179 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVN 273 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-h~~~v~ 273 (491)
+.+.......+.. ...|. .+.+ +++.++.|+.+ ..+.+||..+.+....-.. ....-.
T Consensus 99 ~~~W~~~~~~p~~----------r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 99 TNQWSPCAPMSVP----------RNRIG----VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV 162 (308)
T ss_dssp TTEEEECCCCSSC----------CBTCE----EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCeEeECCCCCcC----------ccccE----EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce
Confidence 8776554332211 11121 2222 66777777643 3588999988765332111 111112
Q ss_pred EEEEecCCCCEEEEEeCC-----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEE
Q 011179 274 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW 343 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iw 343 (491)
+++.. ++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 23332 46777777654 45788887522 11111111111112222333 56677777664 457888
Q ss_pred eCCC
Q 011179 344 DIRK 347 (491)
Q Consensus 344 d~~~ 347 (491)
|+.+
T Consensus 237 d~~~ 240 (308)
T 1zgk_A 237 DVET 240 (308)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 8765
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.54 E-value=0.05 Score=49.75 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEe---eccCCCCeeeeEecCCCCeEEEEe-CCCcE
Q 011179 409 GQKYIYTGSHDSCVYVYDLVSGEQVAA---LKYHTSPVRDCSWHPSQPMLVSSS-WDGDV 464 (491)
Q Consensus 409 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~sp~~~~l~s~~-~Dg~v 464 (491)
+|+++++....+.|...++..++.+.. +......+.++++.|||.++++.. .+|.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 577777777788888888876654332 222345799999999999666543 34533
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.53 E-value=0.019 Score=51.58 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=93.4
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEEC-----C------CeEEEEECCCCccccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----S------PIVHIVDVGSGTMESL 206 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d------~~i~iw~~~~~~~~~~ 206 (491)
+++.|+ ..+.+||..++.-.. ........ .........+++.++.|+. . ..+.+||..+++....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP-KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSC-SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCC-ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344554 579999998874322 22111111 1122233357788888873 1 1378889888776544
Q ss_pred cccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEec-cCCCeeEEEE
Q 011179 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILA-HTSDVNTVCF 277 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~ 277 (491)
...+... .+| ..+.+ +++.++.|+.+ ..+.+||..+.+....-.. ....-.+++.
T Consensus 83 ~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 83 PPLPSPR----------CLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp CCBSSCE----------ESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred CCCCcch----------hce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 3322111 012 11222 56677777632 4589999988764322111 1111122333
Q ss_pred ecCCCCEEEEEeC-C-----CeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC-----cEEEEeCC
Q 011179 278 GDESGHLIYSGSD-D-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIR 346 (491)
Q Consensus 278 ~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~ 346 (491)
.++.+++.|+. + ..+.+||+... ....+..+......-..+.+ ++++++.|+.++ .+.+||+.
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 24567777775 2 46888887622 11122222111111222223 567777777654 47778876
Q ss_pred C
Q 011179 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 5
No 315
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.53 E-value=0.0056 Score=64.75 Aligned_cols=268 Identities=10% Similarity=0.136 Sum_probs=152.7
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCC
Q 011179 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
...|.|.|+.++..+.+.. - ..-+.-.+|..+.||.-. ..++.|+|+++........+.+
T Consensus 47 ~~~vvIidl~~~~~~~rrp--i----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP--I----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (1630)
T ss_pred CceEEEEECCCCCCccccc--c----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence 3478899998864432211 1 123355788888777654 6899999999887666555433
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEecc----CCCeeEEEEecCCCCEEEEEe-------CCC
Q 011179 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DDN 292 (491)
Q Consensus 225 ~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~-------~dg 292 (491)
+|.--.|-.+.. |+..+ +..|+.|++... .+.+.+..| ...|..-..+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 107 ----DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred ----CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccc
Confidence 566667765554 44443 456999999743 333333333 3455555664 6666666443 357
Q ss_pred eEEEEecccccCCCceeeEeccccCcEEEEEEcC--C-CCEEEEeeC---CCcEEEEeCCCC-CCcccccCCCccceeee
Q 011179 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--D-GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWDY 365 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 365 (491)
.+.+|..+ .+.-+.+.||......+.... . ...++.+.. .+.++|.++... ........ ..
T Consensus 180 ~mQLyS~e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k-------k~ 247 (1630)
T 1xi4_A 180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-------KA 247 (1630)
T ss_pred eeeeeecc-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc-------cc
Confidence 88999874 444556677766554444421 1 223333322 267889888653 11110000 00
Q ss_pred eeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcEEEeeccCCCCeee
Q 011179 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
..+.++|+ ....+..++..|+.-..++.-+.-|.|++||+.||.++..-+-...+|..
T Consensus 248 ~~~~~~~~----------------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 248 VDVFFPPE----------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred ccccCCcc----------------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 00011110 11112222344556678888889999999999999988766655566665
Q ss_pred eEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 446 CSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 446 ~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+-+....-++.....|.|.--.+....
T Consensus 306 ~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 306 TAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eccCCCCCceEEEcCCceEEEEEEccch
Confidence 5555443344444466666555554443
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.48 E-value=0.017 Score=52.50 Aligned_cols=199 Identities=12% Similarity=0.087 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCEEEEEE------------cCCeEEEEECCCC-eEEEEEeecC----CCceeEEEEEECC--CCC-eEEE
Q 011179 127 AYVSQFSADGSLFVAGF------------QASQIRIYDVERG-WKIQKDILAK----SLRWTVTDTSLSP--DQR-HLVY 186 (491)
Q Consensus 127 i~~~~~s~dg~~la~~~------------~dg~i~iwd~~~~-~~~~~~~~~~----~~~~~v~~~~~sp--~~~-~l~~ 186 (491)
.-.+++.|+|..+++++ .+|.|.++|..+. ....++.... ........+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566788886555542 6899999998732 1222322221 1223566666655 443 3444
Q ss_pred E-EC--CCeEEEEECCCCcc--ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe---------------
Q 011179 187 A-SM--SPIVHIVDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------- 246 (491)
Q Consensus 187 ~-~~--d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--------------- 246 (491)
+ .. +..|.+|+++.+.. ........ ..-...+++.+.++|.+.++..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g-------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECC-------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEecccc-------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 4 22 46788887764322 11111110 0111578899999998766653
Q ss_pred --CCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEE-eCCCeEEEEecccccCCCceeeEeccccCcEEEEE
Q 011179 247 --SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 247 --~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 323 (491)
..|.|+-+|. ++. ..+...-...+.++|+ ++++.|+.+ +..+.|..|++.... .......+ ......-.++
T Consensus 199 ~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi~ 272 (355)
T 3sre_A 199 GLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNIS 272 (355)
T ss_dssp TCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEEE
T ss_pred cCCccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceEE
Confidence 1255666665 332 2333334567999998 677665554 567899999986211 11112223 2234566788
Q ss_pred EcC-CCCEEEEeeCC-CcEEEEe
Q 011179 324 SRG-DGRYLISNGKD-QAIKLWD 344 (491)
Q Consensus 324 ~~~-~~~~l~s~~~d-g~i~iwd 344 (491)
+.+ +|++.+++..+ +.|..|+
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCcEEEEecCCceEEEEEC
Confidence 898 58877766544 3344343
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.48 E-value=0.06 Score=49.22 Aligned_cols=252 Identities=13% Similarity=0.078 Sum_probs=121.7
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~ 247 (491)
....++|.|+|+ |+++..++.|++++ .+++ ..+..+.... ........|+++|+ +..|+++..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~-----------~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGK-KLVASFDVAN-----------VGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEEC-SSCE-EEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc-eEeeccceee-----------cCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 477899999998 55556679999987 3443 2211111000 00125788999997 555655443
Q ss_pred ----C----CeEEEEECCCC-------eee-EEEec-cCCCeeEEEEecCCCCEEEEEeCC-------------CeEEEE
Q 011179 248 ----D----DCIYVYDLEAN-------KLS-LRILA-HTSDVNTVCFGDESGHLIYSGSDD-------------NLCKVW 297 (491)
Q Consensus 248 ----d----g~i~vwd~~~~-------~~~-~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d-------------g~i~iw 297 (491)
+ +.|..|+.... +.+ ..+.. .......++|. +++.++++.+.. |.|.-+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence 2 56888887654 111 11221 11134678997 788777664331 445555
Q ss_pred ecccccCCC----ceeeEeccccCcEEEEEEcC-CCCEEEEeeCCCc---EEEEeCCCCCCcccccCCCccceeeeeeec
Q 011179 298 DRRCLNVKG----KPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (491)
Q Consensus 298 d~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
+....-... .......++.. ...++|+| +++++++-...+. |.+.. ... ..-|....-.
T Consensus 175 ~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~----------nyGwp~~~g~ 241 (354)
T 3a9g_A 175 DEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGG----------NYGWPLATGK 241 (354)
T ss_dssp CTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTC----------BCCTTTCCSC
T ss_pred cCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCC----------cCCCCcccCC
Confidence 543100000 01111123333 35788999 6665555332221 32221 110 0001000000
Q ss_pred CCCCCccccCCCCceEEEE-eCCceeEeeEEEEe--cccc-cCCCcEEEEEecCCeEEEEECCCC-cEE--Eee-ccCCC
Q 011179 370 YPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHF--SPVY-STGQKYIYTGSHDSCVYVYDLVSG-EQV--AAL-KYHTS 441 (491)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~-s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~h~~ 441 (491)
.... ....++..+ ..+. ....+.+ ...| ..+|+++++....+.|...++... +.. ..+ .....
T Consensus 242 ~~~~------~~~~p~~~~~~~~~---ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~ 312 (354)
T 3a9g_A 242 AGRG------EFVDPVIDTGSETW---APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFG 312 (354)
T ss_dssp CCCT------TSCCCSEECTTCCC---CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSC
T ss_pred CCCC------CCcCCEeecCCCCc---CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCC
Confidence 0000 001122222 1111 1112222 1111 136777777777788999888753 332 222 22245
Q ss_pred CeeeeEecCCCCeEEEEe
Q 011179 442 PVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 442 ~v~~~~~sp~~~~l~s~~ 459 (491)
.+.++++.|||.+.++..
T Consensus 313 rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 313 RLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred CeeEEEECCCCcEEEEEe
Confidence 789999999998666654
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.48 E-value=0.061 Score=49.19 Aligned_cols=213 Identities=11% Similarity=0.036 Sum_probs=105.9
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEECCC---CCeEEEEEC----C----Ce
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----PI 192 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~----d----~~ 192 (491)
..-..++|.|||++ +++..+|.|++++ .++. .+..+............|+++|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34578999999984 4455679999997 3453 11111111112235889999998 444444332 3 56
Q ss_pred EEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC
Q 011179 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN 259 (491)
Q Consensus 193 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-------------dg~i~vwd~~~~ 259 (491)
|..|+...+... .......... +. ....| ....++|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~-~~~~~~l~~~--~~--~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 107 VIRGRLDGSTFK-LKEVKTLIDG--IP--GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp EEEEEECSSSCC-EEEEEEEEEE--EE--CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred EEEEEECCCCcC-cCccEEEEEc--CC--CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 777776654100 0000000000 00 11123 2356899999986665432 256666665432
Q ss_pred --------eeeEEEeccCCCeeEEEEecCCCCEEEEEeCCC---eEEEEeccc--------cc--C--CCceeeEecccc
Q 011179 260 --------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRC--------LN--V--KGKPAGVLMGHL 316 (491)
Q Consensus 260 --------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~--------~~--~--~~~~~~~~~~~~ 316 (491)
.......++. ....++|.+.+++++++-.... .|.+...-. .. . ...++..+....
T Consensus 180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 0111112443 3468999743676665543322 233322110 00 0 012233331122
Q ss_pred CcEEEEEEc-------CCCCEEEEeeCCCcEEEEeCCC
Q 011179 317 EGITFIDSR-------GDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 317 ~~i~~~~~~-------~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.....++|. .+|.++++.-..+.|...++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 356677773 4566666655566677766653
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.43 E-value=0.00074 Score=68.15 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=105.2
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q 011179 229 GIFSLKFSTDGRELVAGS-SDDCIYVYDLEA----NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 303 (491)
.+..++|++.+..|+.+. ..+.|+.+++.. ......+.........|++.+..++++++-...+.|.++++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--- 483 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--- 483 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS---
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC---
Confidence 355788998776666654 457899999875 222222211223356677753456666665667889999875
Q ss_pred CCCceeeEe-ccccCcEEEEEEcCCCCEEEEeeC-C-CcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCC
Q 011179 304 VKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 304 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
+.....+ .........|+++|.+.+|+.... . +.|..+++.....
T Consensus 484 --g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------------------------------ 531 (699)
T 1n7d_A 484 --GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------------------ 531 (699)
T ss_dssp --SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------------------------------
T ss_pred --CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------------------------------
Confidence 2222222 222234567888886555544332 2 5666666543110
Q ss_pred CCceEEEEeCCceeEeeEEEEecccccCCCcEEEE-EecCCeEEEEECCCCcEEEeec--cCCCCeeeeEecCCCCeEEE
Q 011179 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVS 457 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s 457 (491)
..+.... +.....++++|++..|+. -...+.|.++++........+. ........|++..+ .++++
T Consensus 532 -----~~l~~~~-----l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywt 600 (699)
T 1n7d_A 532 -----YSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWT 600 (699)
T ss_dssp -----CEESCSS-----CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred -----eEEEeCC-----CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEE
Confidence 0000000 011122356656554544 4456789999986433332222 12233456666543 34555
Q ss_pred EeCCCcEEEEcCCCC
Q 011179 458 SSWDGDVVRWEFPGN 472 (491)
Q Consensus 458 ~~~Dg~v~iw~~~~~ 472 (491)
....+.|..++..++
T Consensus 601 d~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 601 DIINEAIFSANRLTG 615 (699)
T ss_dssp CSTTTCEEEEETTTE
T ss_pred eCCCCeEEEEEccCC
Confidence 555678888876443
No 320
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.40 E-value=0.061 Score=47.48 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=137.4
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 270 (491)
..|.|.|+.++.......+ ..-+.-.+|..+.+|.-. ...+.++|+++.+.+..+.- ..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi-------------------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 107 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC-------------------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CEEEEEECCCCCCcccccc-------------------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CC
Confidence 3688888887654322111 222455688888777765 67899999999988877754 45
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc----CcEEEEEEcCCCCEEEEeeC-------CCc
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNGK-------DQA 339 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~~-------dg~ 339 (491)
+|.--.|- +.+.|+-.+. ..|+.|++.. ...+.+.+..|. ..|.....+++.++++..+- .|.
T Consensus 108 ~VvfWkWi--s~~~L~lVT~-taVyHWs~~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 108 DVTFWKWI--SLNTVALVTD-NAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp CEEEEEEC--SSSEEEEEES-SEEEEEESST---TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred ccEEEEec--CCCeEEEEcC-CcEEEEcccC---CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 78888885 4556665553 5899999863 345555555443 45777788999998775442 367
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH- 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 418 (491)
+.+|..+. ..-+.++||...-..... . .......+++.+..
T Consensus 182 mQLYS~er-----------------------------------~~sQ~ieGhaa~F~~~~~--~-g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 182 MQLYSVDR-----------------------------------KVSQPIEGHAASFAQFKM--E-GNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEEETTT-----------------------------------TEEEEECCSEEEEEEECC--T-TCSSCEEEEEEEEEE
T ss_pred EEEEeecc-----------------------------------cccceeeeeeeeeEEEec--C-CCCCCceEEEEEEec
Confidence 88888876 455566666532111100 0 00111223333333
Q ss_pred --CCeEEEEECCCC---cE-----EEe-ec---cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 419 --DSCVYVYDLVSG---EQ-----VAA-LK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 419 --dg~i~iwd~~~~---~~-----~~~-~~---~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+.++|.++... .. ... +- +-.+-..++..|+....+..-+.-|.|++||+.++.
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 258899988432 11 111 11 223456678888888888888999999999999875
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.38 E-value=0.022 Score=51.00 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCCCeEEEEECC----CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC----C--
Q 011179 179 PDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----D-- 248 (491)
Q Consensus 179 p~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~----d-- 248 (491)
-++..++.|+.+ ..+.++|..+.+...+...+.. ..+|. .+.+ +++.++.|+. +
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~----~~~~--~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP----------RSGLA----GCVV--GGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC----------CBSCE----EEEE--TTEEEEECCEEEETTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc----------cccce----EEEE--CCEEEEECCCcCCCCCC
Confidence 355666676642 3688999888876554332211 11221 1222 5667777765 2
Q ss_pred ---CeEEEEECCCCeeeEEEecc-CCCeeEEEEecCCCCEEEEEeCC-----CeEEEEecccccCCCceeeEeccccCcE
Q 011179 249 ---DCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 249 ---g~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+.+||..+.+....-... ...-.+++. .++.+++.|+.+ ..+.+||+... ....+..+......-
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGV 162 (308)
T ss_dssp EECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSC
T ss_pred eecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccce
Confidence 45889999887643321111 111122233 246677777643 35778887521 111111111111122
Q ss_pred EEEEEcCCCCEEEEeeCC-----CcEEEEeCCC
Q 011179 320 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 347 (491)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 22223 56677777654 3477777765
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.34 E-value=0.026 Score=50.76 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=69.3
Q ss_pred EEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-----C------CeEE
Q 011179 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----D------DCIY 252 (491)
Q Consensus 184 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-----d------g~i~ 252 (491)
++.|+ ..+.+||..+++... ...+... . .........+++.++.|+. . ..+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~--------~------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 70 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQV--------P------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCS--------C------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCC--------C------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence 44444 679999998887643 1111100 0 1112223347778888873 1 1378
Q ss_pred EEECCCCeeeEEEeccCCC--eeEEEEecCCCCEEEEEeCC--------CeEEEEecccccCCCceeeEeccccCcEEEE
Q 011179 253 VYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 253 vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 322 (491)
+||..+++... +..-..+ -.+++. .++.+++.|+.+ ..+.+||+... ....+..+.........+
T Consensus 71 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 71 QFDHLDSEWLG-MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEETTTTEEEE-CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEE
T ss_pred EecCCCCeEEE-CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEE
Confidence 89998876532 2111111 112233 246677777632 35788887621 111222221111112222
Q ss_pred EEcCCCCEEEEeeC-C-----CcEEEEeCCC
Q 011179 323 DSRGDGRYLISNGK-D-----QAIKLWDIRK 347 (491)
Q Consensus 323 ~~~~~~~~l~s~~~-d-----g~i~iwd~~~ 347 (491)
. -++++++.|+. + ..+.+||+.+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 2 25667777765 2 3577788765
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.018 Score=52.91 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=96.9
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecC-CCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccc-cc
Q 011179 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NV 209 (491)
Q Consensus 132 ~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~ 209 (491)
...+|..++.+ .++.||.-++..+...+.+.... -.-..|..+..+|+|++||..+ +..|.|..+..+...... ..
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34567777776 45789988887443222222221 0112467799999999999886 568889888743221110 00
Q ss_pred ccccccccccccC-CCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe--eeEEEe---------ccCCCeeE
Q 011179 210 TEIHDGLDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANK--LSLRIL---------AHTSDVNT 274 (491)
Q Consensus 210 ~~~~~~~~~~~~~-~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~h~~~v~~ 274 (491)
........+.... ......+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 0000000011110 011245899999999 45689999999999999997521 22 222 22367889
Q ss_pred EEEecCCCCEEEEEe--CCCeEEEE
Q 011179 275 VCFGDESGHLIYSGS--DDNLCKVW 297 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~--~dg~i~iw 297 (491)
++|. .++-.|+..+ ..|.|+-.
T Consensus 185 ~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEc-CCCcEEEEEecCCCCCEEEE
Confidence 9997 5676676655 77877643
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.26 E-value=0.059 Score=48.98 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=104.0
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEECCCC--ee-eEEEec-----cCCCeeEEEEecC-CCC--EE
Q 011179 229 GIFSLKFSTDGRELVAG------------SSDDCIYVYDLEAN--KL-SLRILA-----HTSDVNTVCFGDE-SGH--LI 285 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~------------~~dg~i~vwd~~~~--~~-~~~~~~-----h~~~v~~~~~~~~-~~~--~l 285 (491)
...++...|+|..++++ ..+|.|.++|..+. +. ...+.+ ..-....+.+.+. ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45567788887544443 16899999999742 22 112222 2235677777532 343 44
Q ss_pred EEEeC--CCeEEEEecccccCCCceeeEeccc-cCcEEEEEEcCCCCEEEEeeC---C--------------CcEEEEeC
Q 011179 286 YSGSD--DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGK---D--------------QAIKLWDI 345 (491)
Q Consensus 286 ~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~---d--------------g~i~iwd~ 345 (491)
++-.. +.+|.+|++.........+..+.+. -...+.+.+.++|.+.++... | |.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 5688888876322122223333322 234678888888887776531 1 11111111
Q ss_pred CCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEe-cCCeEEE
Q 011179 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~i 424 (491)
+. +..+ ..-......+++|||++.|+.+. ..+.|+.
T Consensus 211 ------------------------------------~~-~~~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 211 ------------------------------------ND-VRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp ------------------------------------TC-CEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ------------------------------------Ce-EEEe------ecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 00 0000 11122234457888998887765 4689999
Q ss_pred EECCC-CcE--EEeeccCCCCeeeeEecC-CCCeEEEEeCC
Q 011179 425 YDLVS-GEQ--VAALKYHTSPVRDCSWHP-SQPMLVSSSWD 461 (491)
Q Consensus 425 wd~~~-~~~--~~~~~~h~~~v~~~~~sp-~~~~l~s~~~D 461 (491)
|++.. ++. ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus 248 ~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 248 YEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 99863 332 2233 2345677899999 59987777655
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.23 E-value=0.13 Score=47.46 Aligned_cols=218 Identities=10% Similarity=0.114 Sum_probs=137.2
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 270 (491)
..|.|.|+.++.......+ ..-+.-.+|..+.+|.-. ..++.|+|+++...+..+.- ..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e 106 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC-------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CeEEEEECCCCCcceeccc-------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CC
Confidence 4788888877654322111 223456788888777765 67899999999988877754 44
Q ss_pred CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEecccc----CcEEEEEEcCCCCEEEEee-------CCCc
Q 011179 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNG-------KDQA 339 (491)
Q Consensus 271 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~-------~dg~ 339 (491)
+|.--.|- +.+.|+..+ +..|+.|++.. ...+++.+..|. ..|.....+++.++++..+ -.|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~taVyHWsi~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CCCEEEEE--ETTEEEEEC-SSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CceEEEec--CCCeEEEEc-CCeeEEecccC---CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 67777886 345665554 45899999863 345555555443 4577778899999887543 2467
Q ss_pred EEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec-
Q 011179 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH- 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~- 418 (491)
+.+|..+. ..-..++||...-..... .- ......+++.+..
T Consensus 181 mQLYS~er-----------------------------------~~sQ~ieGhaa~F~~~~~--~g-~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 181 MQLYSVDR-----------------------------------KVSQPIEGHAASFAQFKM--EG-NAEESTLFCFAVRG 222 (494)
T ss_dssp EEEEESTT-----------------------------------CCEEEECCSEEEEEEEEC--TT-CSSEEEEEEEEECS
T ss_pred EEEeeccc-----------------------------------cccchheeeeeeeEEEec--CC-CCCCceEEEEEEec
Confidence 88888876 444555666532111110 00 0001123343333
Q ss_pred --CCeEEEEECCCC--------cEEEeec----cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCC
Q 011179 419 --DSCVYVYDLVSG--------EQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 419 --dg~i~iwd~~~~--------~~~~~~~----~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~ 473 (491)
.+.++|.++... +....+. .-.+-..++..++....+..-+.-|.|+++|+.++.
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 278999998542 1111111 223456678888888888888999999999999875
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.20 E-value=0.067 Score=48.08 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=90.8
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeecC-CCceeEEEEEECCCCCeEEEEEC----CC-------eEEEEECCCCcccc
Q 011179 138 LFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMES 205 (491)
Q Consensus 138 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~----d~-------~i~iw~~~~~~~~~ 205 (491)
+++.|+. .+..||..++.-.. ..... ..+. .......++..++.|+. ++ .+.++|..+.+...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~--~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 92 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRN--HSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG 92 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSS--EEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCcc--ceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE
Confidence 3444543 48899998874333 22211 1111 12223456778888873 11 27788888877655
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeeeEEEeccCC-CeeEEEE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTS-DVNTVCF 277 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~h~~-~v~~~~~ 277 (491)
....+... ..|. .+.+ +++.++.|+.+ ..+.+||..+.+....-..... .-.+++.
T Consensus 93 ~~~~p~~r----------~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 93 LPPLPSAR----------CLFG----LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp CSCBSSCB----------CSCE----EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred CCCCCccc----------cccc----eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 43322211 1121 1222 56777777753 3588999988765432111111 1112222
Q ss_pred ecCCCCEEEEEeC------CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC-----CcEEEEeCC
Q 011179 278 GDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIR 346 (491)
Q Consensus 278 ~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 346 (491)
.++.+++.|+. -..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp --ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred --ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECC
Confidence 34667777764 235888887621 11122111111111122222 56677777653 246678876
Q ss_pred C
Q 011179 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
+
T Consensus 231 ~ 231 (318)
T 2woz_A 231 T 231 (318)
T ss_dssp T
T ss_pred C
Confidence 5
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.10 E-value=0.21 Score=47.58 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=61.4
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeecCCCce----------------------e--EEEEEEC---CCCCeEEEEEC-C
Q 011179 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRW----------------------T--VTDTSLS---PDQRHLVYASM-S 190 (491)
Q Consensus 139 la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------------~--v~~~~~s---p~~~~l~~~~~-d 190 (491)
+.+|+..|.|+|+-+.+++.+..+.......+ . =..+.+. .||++|..-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 67889999999999999987776543321100 0 0112222 25778887764 5
Q ss_pred CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEc--CCCCEEEEEeC
Q 011179 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS 247 (491)
Q Consensus 191 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~~~~l~~~~~ 247 (491)
..|...+++.-++..+..++... .+..++|- |+..|+++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~---------------~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ---------------AIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS---------------CEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCc---------------CcccccccccCCccEEEecce
Confidence 67888888887776666655433 56677775 67777777764
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.10 E-value=0.2 Score=47.43 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=61.3
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~~~ 247 (491)
....|+|.|+|+++++-...+.|++++..++....+..+..... .......+..|+|+|+ +..|.+...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~--------~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--------DADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------CTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc--------ccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 46789999999866654433578888765554432222211100 0001236889999995 555555442
Q ss_pred -------------CCeEEEEECCCC--e-----eeEE-Eec-cCCCeeEEEEecCCCCEEEEEeC
Q 011179 248 -------------DDCIYVYDLEAN--K-----LSLR-ILA-HTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 248 -------------dg~i~vwd~~~~--~-----~~~~-~~~-h~~~v~~~~~~~~~~~~l~s~~~ 290 (491)
...|.-+++... . .+.. +.. .......|+|. +++.++++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEECC
Confidence 235666665332 1 1111 211 12246889997 78887777553
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.05 E-value=0.041 Score=50.45 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred CCCEEEEEEc-CCeEEEEECCC-CeEEEEEeecC-CCceeEEEEEECCCCCeEEEEEC-C---------CeEEEEECCCC
Q 011179 135 DGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGSG 201 (491)
Q Consensus 135 dg~~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d---------~~i~iw~~~~~ 201 (491)
++++++.|+. ...+.+||..+ ........... ..+..-..+.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6667777764 35688999863 11222222212 11111222223 5677777765 2 46889999888
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------------------------
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------------------------- 248 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d--------------------------------- 248 (491)
+........ +....+| .++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~---------p~~r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 97 SWVKLMSHA---------PMGMAGH----VTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEECSCCC---------SSCCSSE----EEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred cEEECCCCC---------Ccccccc----eEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 765544322 0011112 1222 467778888754
Q ss_pred ------CeEEEEECCCCeeeEEEecc-CCCe-eEEEEecCCCCEEEEEeC------CCeEEEEec
Q 011179 249 ------DCIYVYDLEANKLSLRILAH-TSDV-NTVCFGDESGHLIYSGSD------DNLCKVWDR 299 (491)
Q Consensus 249 ------g~i~vwd~~~~~~~~~~~~h-~~~v-~~~~~~~~~~~~l~s~~~------dg~i~iwd~ 299 (491)
..+.+||..+.+....-... .... .+++.. ++.+++.|+. ...+.+||+
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999888754432211 1111 334442 4667777654 235666765
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.078 Score=47.61 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=51.9
Q ss_pred cCCCCEEEEEeC----CC-------eEEEEECCCCeeeEEEec-cCCCeeEEEEecCCCCEEEEEeCC-------CeEEE
Q 011179 236 STDGRELVAGSS----DD-------CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDD-------NLCKV 296 (491)
Q Consensus 236 s~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d-------g~i~i 296 (491)
..++..++.|+. ++ .+.+||..+.+....-.. ....-.+++.. ++.+++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 457778888873 12 278899888765332111 11111233332 46777777754 24677
Q ss_pred EecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCC------CcEEEEeCCC
Q 011179 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRK 347 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 347 (491)
||+... ....+..+......-..+. .++++++.|+.+ ..+.+||+.+
T Consensus 132 yd~~~~--~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 132 YDPVAA--KWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EETTTT--EEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EeCCCC--CEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 777521 1111111111111111222 356677777642 3478888765
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.96 E-value=0.015 Score=53.47 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCe------------EEEEEeecC---CCceeEEEEEECCCC---CeEEEE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAK---SLRWTVTDTSLSPDQ---RHLVYA 187 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~---~~~~~v~~~~~sp~~---~~l~~~ 187 (491)
.|..+..||+|++||..+ +..|.|-.+..+. ......... ....+|..+.|+|-+ ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 677899999999999886 4578888887331 111111111 124579999999954 689999
Q ss_pred ECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 011179 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVY 254 (491)
Q Consensus 188 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~--~dg~i~vw 254 (491)
..|+.|++||+........ .+...... |.. ......|.+++|..++-.|.+.+ ..|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~--fg~---d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNS--FGL---DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSE--EES---CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccc--cCC---CcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986332222 11111111 111 11224799999999887676654 77877654
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.74 E-value=0.084 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=26.4
Q ss_pred eEEEEECCCCc--EEEeeccCCCCeeeeEecCCCCeEEEEeCCC------cEEEEcCCCCC
Q 011179 421 CVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG------DVVRWEFPGNG 473 (491)
Q Consensus 421 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg------~v~iw~~~~~~ 473 (491)
.+.+||+.+.+ .+..+...... ..+...++++++.|+.++ .|.++++..++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 57889987654 33333322222 222334778888888653 35556776654
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.62 E-value=0.34 Score=42.95 Aligned_cols=173 Identities=11% Similarity=0.072 Sum_probs=94.8
Q ss_pred EcCCCCEEEEEE--cCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECC--------------CeEEE
Q 011179 132 FSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHI 195 (491)
Q Consensus 132 ~s~dg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------~~i~i 195 (491)
|+++|.+|.... .++.|...+.+... ..++.. -.+--+++++.+|..+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 345777777654 35666666665432 222211 1123457889988887653 36777
Q ss_pred EECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeEEEeccCCC
Q 011179 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 196 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~h~~~ 271 (491)
.+++.++...+.. -....|++++++|+... ....|+..++.... ...+..+..
T Consensus 93 i~~dg~~~~~l~~---------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~- 149 (302)
T 3s25_A 93 IKRNGHGSTVLDP---------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL- 149 (302)
T ss_dssp EETTSCCCEEEEC---------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-
T ss_pred EeCCCCcceEeec---------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-
Confidence 7777665433221 11236777888888775 34567777776544 344544433
Q ss_pred eeEEEEecCCCCEEEEEeC-CCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCC--cEEEEeCCC
Q 011179 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRK 347 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~ 347 (491)
..++ ++++.|+-.+. ...|.+-++. +.....+.. +... ..+.|++.+|+-....+ .|..-++..
T Consensus 150 ---~~~~-~~g~~iy~t~~g~~~Iy~~~l~-----g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 ---FTCN-TSDRYFYYNNPKNGQLYRYDTA-----SQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp ---CCSE-EETTEEEEECTTTCCEEEEETT-----TTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred ---eEee-EECCEEEEEeCCCceEEEEECC-----CCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3444 44555554444 5677777764 222223321 2222 33568888887665433 455555544
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.38 Score=43.26 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=68.3
Q ss_pred CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEE---EcCCCCEEEEE-eCCCeEEEEECC
Q 011179 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK---FSTDGRELVAG-SSDDCIYVYDLE 257 (491)
Q Consensus 182 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~s~~~~~l~~~-~~dg~i~vwd~~ 257 (491)
..+++++.||.|.-+|..+|+........... ++.... ...++..++.. +.||.|+.++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~---------------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ---------------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSC---------------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccC---------------CcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 46888999999999999999876655443100 010000 00133333333 589999999998
Q ss_pred CCeeeEEEec----cCCCeeE---EEEec----CCCCEEEEEeCCCeEEEEecccccCCCceeeEec
Q 011179 258 ANKLSLRILA----HTSDVNT---VCFGD----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 258 ~~~~~~~~~~----h~~~v~~---~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
++.....+.. ...++.. ....+ ..+..+++|+.+|.+...|++ +++.+..+.
T Consensus 76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~ 138 (339)
T 2be1_A 76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFG 138 (339)
T ss_dssp TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEES
T ss_pred CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEe
Confidence 8865443331 1122221 00000 145688899999999999998 777777665
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.60 E-value=0.32 Score=43.11 Aligned_cols=135 Identities=10% Similarity=0.181 Sum_probs=73.4
Q ss_pred CCCCeEEEEEC--CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------
Q 011179 179 PDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------- 248 (491)
Q Consensus 179 p~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~d-------- 248 (491)
+++..|..... ++.|...+.+......+.. -.+--+++++.+|+-....
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---------------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~ 81 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---------------------DTAMYINADKNYVYYVRNNNQKITSQT 81 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---------------------EEEEEEEECSSEEEEEEECC------C
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---------------------CceeeEEEcCCEEEEEECCCCcccccc
Confidence 45666666542 4566666655444322211 1223457788888776543
Q ss_pred ------CeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEe--CCCeEEEEecccccCCCceeeEeccccCcEE
Q 011179 249 ------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 249 ------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
..|+..++...+... +.. .. ...|+ ++++.|+-.. .++.-.||-+.. .+.....+..+..
T Consensus 82 ~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~---dGs~~~~lt~~~~--- 149 (302)
T 3s25_A 82 FFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYAS-LIGNYIYYLHYDTQTATSLYRIRI---DGEEKKKIKNHYL--- 149 (302)
T ss_dssp CSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEE-EETTEEEEEEESSSSCEEEEEEET---TSCCCEEEESSCC---
T ss_pred eeccCCCeEEEEeCCCCcceE-eec--CC--ccEEE-EeCCEEEEEeecCCCCceEEEEEC---CCCCeEEEeCCCc---
Confidence 468888887765322 322 22 22555 4566666655 344444444431 2333444444432
Q ss_pred EEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 011179 321 FIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 347 (491)
..++++++.|+-.+. ...|...++..
T Consensus 150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 150 -FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp -CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred -eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 456778888775554 56787777765
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.51 E-value=0.88 Score=46.40 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCccc
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~ 204 (491)
..|.++...+++..|..|+. +-+..++..++... ..... ....|.++....++.+.+ |+. +-+.+++..++...
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ 264 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE
Confidence 35889988888776666664 45888898776332 22111 123688888888777554 454 45778887765443
Q ss_pred cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------ccCCCeeEEEE
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCF 277 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~ 277 (491)
........... -....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-
T Consensus 265 ~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~ 331 (758)
T 3ott_A 265 HIIHDSRNIQS---------LTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFR 331 (758)
T ss_dssp EECCCTTCTTS---------CSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred EEEcCCCCcCc---------CCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEE
Confidence 22111000000 0122688998888886 66676667 5554332 21 11121 11245777776
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec-------cccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 278 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
. .++++. .|+.+| +..++..... ......+. -....|.++.-..+|++.+ |. ++-|..||..+
T Consensus 332 D-~~g~lW-iGt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~ 401 (758)
T 3ott_A 332 D-SKGFYW-FGGANG-LIRFTDPAGE--RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT 401 (758)
T ss_dssp C-TTCCEE-EEETTE-EEEESCTTSS--CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT
T ss_pred c-CCCCEE-EeeCCc-ceeecccccc--cceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC
Confidence 3 555544 455555 5556543110 01111111 0124588888888887554 44 45688999865
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.36 E-value=0.22 Score=41.29 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeE-----EEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~ 200 (491)
.+.+++|+|+|.+.++ .+|.++-.+..++.. ..+.+-..+... -.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999997777 677766656543100 011111111111 367899999987777 569888777533
Q ss_pred Ccccccccc-ccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEEe-ccCCCe
Q 011179 201 GTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV 272 (491)
Q Consensus 201 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~-~h~~~v 272 (491)
......... ..... +--..+..|.|.|+|.+.++. |+.++-....+.. ....+. ..-...
T Consensus 117 ~~~~~Wl~~a~~vg~----------~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 117 SDTDNWIARATEVGS----------GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp STTCCHHHHSEEEEC----------SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CCCCceeccccEecc----------CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence 221111110 00000 001257899999999866665 7876544333221 111121 222234
Q ss_pred eEEEEecCCCCEEEEEeCCCeE
Q 011179 273 NTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 273 ~~~~~~~~~~~~l~s~~~dg~i 294 (491)
..+.|. +++.+.++. ++.+
T Consensus 185 r~l~f~-~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 185 KFLFFS-SVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEEEC-TTSCEEEEE--TTEE
T ss_pred EEEEEC-CCCcEEEEe--CCeE
Confidence 446675 777776665 6643
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.34 E-value=1.1 Score=45.66 Aligned_cols=194 Identities=14% Similarity=0.197 Sum_probs=110.5
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcc
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~ 203 (491)
...|.++.-..+| .|..|+.+| +..||..++.. .. ........|.++.. .++ .|..++.+ -|..++..+++.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f-~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRY-EQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEE-CC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEE-EC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence 4579998888777 466666665 78999887632 11 11111224776654 344 46666665 578888876654
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-----cCCCeeEEEEe
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFG 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~ 278 (491)
....... .++ ....|.++....+|. |.+|+.+| |..+|..+++....... ....|.++...
T Consensus 134 ~~~~~~~---~~l---------~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 134 TSFDTRR---NGL---------PNNTIYSIIRTKDNQ-IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp EEECHHH---HCC---------SCSCEEEEEECTTCC-EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred EEeccCC---CCc---------CCCeEEEEEEcCCCC-EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 3221100 000 012588888888887 44455554 88899877654321111 11247788774
Q ss_pred cCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.++..|..|+. +-+..+|.. ..............|.++...++|.+.+. +.+ -+.+++..+
T Consensus 200 -~~~~~lWigt~-~Gl~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~ 260 (758)
T 3ott_A 200 -TTRQCVWIGTE-GYLFQYFPS----TGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDT 260 (758)
T ss_dssp -TTTTEEEEEEE-EEEEEEETT----TTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTT
T ss_pred -CCCCEEEEEEC-CCCeEEcCC----CCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCC
Confidence 55565555654 457778865 22221111112345888888888876554 444 578888765
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.31 E-value=0.35 Score=51.65 Aligned_cols=220 Identities=10% Similarity=0.099 Sum_probs=127.9
Q ss_pred CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 011179 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 269 (491)
...|.|.|+.++.......+ ..-+.-.+|..+.+|.-. ..++.|+|+++...+..+.- .
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~ 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T 105 (1630)
T ss_pred CceEEEEECCCCCCcccccc-------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-C
Confidence 34788888887654322211 223455677777666654 67899999999887766543 4
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccc----cCcEEEEEEcCCCCEEEEee-------CCC
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRGDGRYLISNG-------KDQ 338 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~-------~dg 338 (491)
.+|.--.|- +.+.|+..+ +..|..|++.. ...+++.+..| ...|..-..+++.++++..| -.|
T Consensus 106 e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 567777885 344555544 45899999962 33455555444 35677777889999887543 347
Q ss_pred cEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEec
Q 011179 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 418 (491)
.+.+|...... -..+.||...-...... ...+...+++.+..
T Consensus 180 ~mQLyS~er~~-----------------------------------sQ~iegha~~F~~~~~~---~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 180 AMQLYSVDRKV-----------------------------------SQPIEGHAASFAQFKME---GNAEESTLFCFAVR 221 (1630)
T ss_pred eeeeeeccccc-----------------------------------chhhhHhHhhhheeccC---CCCCCceEEEEEEe
Confidence 78888876532 22223332110000000 00011222222222
Q ss_pred ---CCeEEEEECCCC---cEEE------ee-c--cCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCCCCC
Q 011179 419 ---DSCVYVYDLVSG---EQVA------AL-K--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 ---dg~i~iwd~~~~---~~~~------~~-~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~~~~ 474 (491)
.+.++|-++... .... .+ . .-..-..++..++....+..-+.-|.|+++|+.++..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 267888887442 1110 11 0 1123445677788778888888999999999998754
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.30 E-value=0.6 Score=42.17 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=122.7
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC---CCEEEEE--
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-- 245 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---~~~l~~~-- 245 (491)
....|+|.|+|+++++--..|.|++++..++....+..+.... .........|+++|+ +..|.+.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~----------~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS----------PSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----------CBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee----------ecCCCCceeeEeccccccCCEEEEEEe
Confidence 4778999999986666544899999986655542221111100 011226889999995 3445443
Q ss_pred -eCCCeEEEEECCCC----------eeeE-EEec-cCCCeeEEEEecCCCCEEEEEeC-------------CCeEEEEec
Q 011179 246 -SSDDCIYVYDLEAN----------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVWDR 299 (491)
Q Consensus 246 -~~dg~i~vwd~~~~----------~~~~-~~~~-h~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~ 299 (491)
..++.|.-|.+..+ +.+. .+.. .......|.|. +++.++++.+. .|.|.-.+.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 23456666766541 1111 1211 11234679997 77887777543 244444444
Q ss_pred ccccCCC----ceeeEeccccCcEEEEEEcCCCCEEEEee-CCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCC
Q 011179 300 RCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 300 ~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
...-... ....--.+|.. ...++|+|+|.++++-. .++.=.|--+.... ..-|....-. ..
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~----------nyGwP~~~g~--~~- 247 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGD----------NYGWPEAEGK--GG- 247 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTC----------BCCTTTCCSS--CC-
T ss_pred CCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCC----------EecCCcccCC--CC-
Confidence 3110000 01111224433 34789999887665432 23222222222211 1111111000 00
Q ss_pred ccccCCCCceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCCCcE----EEeeccCCCCeeeeEecC
Q 011179 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp 450 (491)
......++..+..+.. ....+.+. +|.++...-..+.|....+..... ...+.+..+.+.+++..|
T Consensus 248 ---~~~~~~P~~~~~~~~~--ap~G~~~~-----~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 248 ---GSGFHDPVAQWSTDEA--SPSGIAYA-----EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp ---CTTCCCCSEEECTTTC--CEEEEEEE-----TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred ---CccccCCcEecCCCCC--CCcceEEE-----cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 0011233344432210 11112221 355555555566676666654432 223444456899999999
Q ss_pred CCCeEEEEe
Q 011179 451 SQPMLVSSS 459 (491)
Q Consensus 451 ~~~~l~s~~ 459 (491)
||.++++.+
T Consensus 318 DG~lyv~td 326 (347)
T 3das_A 318 GDKLWLVTS 326 (347)
T ss_dssp TTEEEEEEC
T ss_pred CCcEEEEEc
Confidence 998666543
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.19 E-value=0.44 Score=39.55 Aligned_cols=157 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.+..++|+|++.+.++ .+|.+.-.+..+........... .-+ ..+.. ...++.|.|+|.+.++ .||.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t-~IG-------~~Gw~-~F~a~~fD~~G~LYav--~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK-KIG-------NGGWN-QFQFLFFDPNGYLYAV--SKDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE-EEE-------CSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc-Eec-------ccccc-cceEEEECCCCCEEEe--CCCE
Confidence 5679999999986666 67776666654432222111100 000 00011 1367899999987666 5699
Q ss_pred EEEEECCCCeee------EEE-eccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCC-c-eeeEe-ccccCcEE
Q 011179 251 IYVYDLEANKLS------LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K-PAGVL-MGHLEGIT 320 (491)
Q Consensus 251 i~vwd~~~~~~~------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~-~~~~~-~~~~~~i~ 320 (491)
|+-++-.+.... ..+ ..--..+..|.|. +++.+.+.. |+.+.-+......... . ....+ ...-...+
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 988876432211 111 1112467888886 888877666 7775433322100000 0 01111 12223455
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+.|.+++.+.++. ++ ++|....
T Consensus 186 ~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EEEECCCCcEEEEe--CC--eEEecCC
Confidence 67799999877776 66 4554443
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.10 E-value=0.37 Score=48.53 Aligned_cols=198 Identities=16% Similarity=0.097 Sum_probs=105.4
Q ss_pred CCCCEEEEEEcC----CeEEEEECCCCeEEEEEee-----cCCCceeEEEEEECCCCCeEEEEECC------CeEEEEEC
Q 011179 134 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV 198 (491)
Q Consensus 134 ~dg~~la~~~~d----g~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~iw~~ 198 (491)
-++.+++.|+.+ ..+.+||..++.-...... ....+..-..+.+..+++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888753 4688999887632222101 11112122233333277777887754 35888999
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEe-----ccCCC
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRIL-----AHTSD 271 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~-----~h~~~ 271 (491)
.+.+.......+.. ..+| +++...+++.++.|+.++ .+.+||..+......-. .....
T Consensus 476 ~t~~W~~~~~~p~~----------R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWSMIKSLSHT----------RFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV 540 (695)
T ss_dssp TTTEEEECCCCSBC----------CBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred CCCcEEECCCCCCC----------cccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence 88776554332221 1112 223323788888887654 69999999887543221 11222
Q ss_pred eeEEEEecCCCCEEEEEeC--C-----CeEEEEecccccC----CCceeeEec-cccCcEEEEEEcCCCCEEEEeeCC--
Q 011179 272 VNTVCFGDESGHLIYSGSD--D-----NLCKVWDRRCLNV----KGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKD-- 337 (491)
Q Consensus 272 v~~~~~~~~~~~~l~s~~~--d-----g~i~iwd~~~~~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d-- 337 (491)
..++.+....+.+++.|+. + ..+.+||+....- ....+.... ...... ++....++++++.|+.+
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSS
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCC
Confidence 2335554233667777765 2 3588889863210 011111111 111112 22233336777777743
Q ss_pred ------CcEEEEeCCC
Q 011179 338 ------QAIKLWDIRK 347 (491)
Q Consensus 338 ------g~i~iwd~~~ 347 (491)
..+.+||+.+
T Consensus 620 ~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCCCTTTSEEEEETTT
T ss_pred CCCCCCCeEEEEECCC
Confidence 4588888876
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.97 E-value=0.41 Score=43.27 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEECCC---CCeEEEE-E--CCCeEE
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH 194 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~sp~---~~~l~~~-~--~d~~i~ 194 (491)
-..-..++|.|||+++++--..|.|++++..++........ ..........|+++|+ +.+|.+. + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 44568999999999777664489999998765543211111 1122446899999996 3334332 2 345666
Q ss_pred EEECCCCccc--cccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC
Q 011179 195 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN 259 (491)
Q Consensus 195 iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~-------------dg~i~vwd~~~~ 259 (491)
-|....+... ...........+ . ....| ....|.|.|||.+.++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~--p--~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGI--P--KGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEE--C--CCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred EEEeCCCCcccccCCCcEEEEEcC--C--CCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 6666543210 110111111111 0 11234 3456999999986666432 355555555432
Q ss_pred --------eeeEEEeccCCCeeEEEEecCCCCEEEEE
Q 011179 260 --------KLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 260 --------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 288 (491)
....--.+|. ....++|. +++.++++-
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~d-p~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWD-DKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEEC-TTCCEEEEE
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEEC-CCCCEEEEe
Confidence 1111112443 35688997 567665543
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.77 E-value=0.52 Score=44.58 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEECCC---CCeEEEEEC-------
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSPD---QRHLVYASM------- 189 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~---~~~l~~~~~------- 189 (491)
..-..|+|.|||+++++-...+.|++++..++.......... ........|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 355799999999977765444578888865553322111111 12346889999995 444444332
Q ss_pred ------CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 011179 190 ------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 190 ------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~ 246 (491)
...|.-++...+... .......... +. ....| ....|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~-~~~~~~i~~~--~p--~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDT-LEKPVDLLAG--LP--SSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTE-EEEEEEEEEE--EC--CCSSC--CEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCC-cCCcEEEEEc--CC--CCCCC--CCCeEeECCCCeEEEEEC
Confidence 134555555332110 0000000000 00 11124 468899999998666644
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.96 Score=40.62 Aligned_cols=148 Identities=8% Similarity=0.021 Sum_probs=81.2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEE--CCCCCeEEEE--ECCCeEEEEECCCCccccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI 212 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~ 212 (491)
.++++++.||.|.-.|..+|+..-+.... ...++....- .+.+..++.+ +.||.|..++..+|........+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 46888999999999999999766655433 1011211110 1112234433 5799999999888754432222221
Q ss_pred cccccccccCCCCceecEEE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC--CC-----eeEEEE
Q 011179 213 HDGLDFSAADDGGYSFGIFS---LKF-----STDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SD-----VNTVCF 277 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~i~~---~~~-----s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~-----v~~~~~ 277 (491)
... .++.. ... ...+..+++|+.+|.+...|+.+|+.+..+.... .. ..|...
T Consensus 89 v~~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 89 VST------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp HTT------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred eec------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 110 01110 000 0134578999999999999999999988875321 10 111111
Q ss_pred e----cCCCCEEEEEeCCCeEEEEe
Q 011179 278 G----DESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 278 ~----~~~~~~l~s~~~dg~i~iwd 298 (491)
. +..+..++.+..+..+.+.+
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp --------CCEEEEEEEEEECEECC
T ss_pred cccccccCCCeEEEecceEEEEEEC
Confidence 0 01235677777766666655
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.92 E-value=0.75 Score=46.32 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=85.1
Q ss_pred EEEcCCCCEEEEEEcC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCC--eEEEEECCCC
Q 011179 130 SQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 201 (491)
Q Consensus 130 ~~~s~dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~iw~~~~~ 201 (491)
+.+..++++++.|+.+ ..+.+||..++. ..........+..- +++...+++.++.|+.++ .+.+||..+.
T Consensus 446 ~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~-W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE-WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE-EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc-EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 3333377788888754 358899998863 22221111111111 223324788888887654 6999999888
Q ss_pred ccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCCee-----eEEEec-
Q 011179 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANKL-----SLRILA- 267 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~--d-----g~i~vwd~~~~~~-----~~~~~~- 267 (491)
............ ....+| .++.+..+ ++.++.|+. + ..+.+||+.+... -..+..
T Consensus 524 ~W~~~~~~g~~p-------~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~ 592 (695)
T 2zwa_A 524 IFKDVTPKDEFF-------QNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH 592 (695)
T ss_dssp EEEECCCSSGGG-------GSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC
T ss_pred ceEEccCCCCCC-------Ccccce----eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC
Confidence 765443211100 011122 23445554 667777765 2 4699999988872 122211
Q ss_pred --cCCCeeEEEEecCCCCEEEEEeC--------CCeEEEEecc
Q 011179 268 --HTSDVNTVCFGDESGHLIYSGSD--------DNLCKVWDRR 300 (491)
Q Consensus 268 --h~~~v~~~~~~~~~~~~l~s~~~--------dg~i~iwd~~ 300 (491)
....-.+++.. .++.+++.|+. ...+.+||+.
T Consensus 593 p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 593 PLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp GGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred CCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 11111223332 33677777774 3458889986
No 347
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.95 E-value=5.2 Score=36.24 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=40.4
Q ss_pred CCeeEEEEecC------CCCEEEEEeCCCeEEEEecccccCCCceee--Ee-ccccCcEEEEEEcCCCCEEEEee-CCCc
Q 011179 270 SDVNTVCFGDE------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VL-MGHLEGITFIDSRGDGRYLISNG-KDQA 339 (491)
Q Consensus 270 ~~v~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~l~s~~-~dg~ 339 (491)
..+..+.|... +++++++.-..+.|...++. .+.... .+ ......+..+++.|||.+.++.. .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 45677787521 36677766677788777775 222221 12 22335789999999998666533 3443
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.01 E-value=2.7 Score=40.19 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=66.3
Q ss_pred EEEEEECCCCCeEEEEEC-CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 172 VTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 172 v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
...+..+|||++++.++. +.++.+++++.-......++....+.+.-... -.-.....+|.++|.-..+-.-|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECCCCceEeeeeecce
Confidence 456789999999988765 77999999874221000000000000000000 0115778899999965555668999
Q ss_pred EEEEECCCC----------eeeEEEeccCCCeeEEEEe-----cCCCCEEEEEeC
Q 011179 251 IYVYDLEAN----------KLSLRILAHTSDVNTVCFG-----DESGHLIYSGSD 290 (491)
Q Consensus 251 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~-----~~~~~~l~s~~~ 290 (491)
|.-|++... ..+.++.-|-.+- .+.-+ .++|++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecc
Confidence 999999653 3445554444332 22221 367889888753
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.34 E-value=12 Score=32.50 Aligned_cols=183 Identities=12% Similarity=0.024 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCCCcccc
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 205 (491)
.|..++-..+-. ++. . ||.|+.|-....-.+. .+......|..++...+ +.+.-. +|.|..|-........
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg---~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT---VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC---CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC---CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC
Confidence 566666554332 333 4 8999999765421111 11111225777766543 333344 8999999765432211
Q ss_pred ccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEE
Q 011179 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 285 (491)
.... ....|..++...+.. ++ -. ||.|+.|-......+..-..-...|..++.. ....+
T Consensus 135 ~~~~----------------~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 135 VPAE----------------AQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp CCGG----------------GGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCcc----------------CCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 1100 011566666654432 22 23 7999999765432221111223567777763 33444
Q ss_pred EEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 286 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+. .||.|..|=.......+.+. .....|..++...+.. ++. . ||.|..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 44 59999999765222122221 1224566776654433 333 3 89999997655
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.55 E-value=12 Score=35.31 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCC-EEEEeeCCCcEEEEeCC
Q 011179 317 EGITFIDSRGDGR-YLISNGKDQAIKLWDIR 346 (491)
Q Consensus 317 ~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~ 346 (491)
..-+.|+|.|+|. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4557899999996 45556678999999753
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.27 E-value=16 Score=31.71 Aligned_cols=144 Identities=12% Similarity=0.070 Sum_probs=75.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~ 250 (491)
.|..++.... +.+.-. ||.|..|-............ . ...|..++..... .++. . ||.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~---~-------------~~~i~~ia~G~~h-s~~l-~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAA---T-------------QSGVDAIAAGNYH-SLAL-K-DGE 82 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGG---G-------------GSCCCEEEECSSE-EEEE-E-TTE
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCcc---C-------------CCCEEEEEeCCCE-EEEE-E-CCE
Confidence 4666665432 223335 89999997654332221110 0 0145666665443 2333 4 899
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEeccccCcEEEEEEcCCCCE
Q 011179 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 330 (491)
|+.|-....-.+..-..-...|..++.. . ...+.-. ||.|..|-......-+.+ ......|..++...+.
T Consensus 83 v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gqlg~~----~~~~~~i~~i~~G~~~-- 152 (282)
T 3qhy_B 83 VIAWGGNEDGQTTVPAEARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQTTVP----AEAQSGVTALDGGVYT-- 152 (282)
T ss_dssp EEEEECCTTSTTCCCGGGSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSE--
T ss_pred EEEeeCCCCCCCCCCcccCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCcCCCC----ccCCCCeEEEEcccCE--
Confidence 9999765432211111123467777775 2 3334445 999999976522111111 1233567777765443
Q ss_pred EEEeeCCCcEEEEeCCC
Q 011179 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~s~~~dg~i~iwd~~~ 347 (491)
.+.-. ||.|..|-...
T Consensus 153 ~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 153 ALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEEEE-TTEEEEEECCT
T ss_pred EEEEE-CCEEEEecCCC
Confidence 33333 79999997765
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.30 E-value=20 Score=31.93 Aligned_cols=209 Identities=9% Similarity=0.018 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEE---CCC------CeEEEEEeecCCCceeEEEE-EECC--CCCeEEEEECCCeE
Q 011179 126 RAYVSQFSADGSLFVAGFQASQIRIYD---VER------GWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV 193 (491)
Q Consensus 126 ~i~~~~~s~dg~~la~~~~dg~i~iwd---~~~------~~~~~~~~~~~~~~~~v~~~-~~sp--~~~~l~~~~~d~~i 193 (491)
.+..+........|+.-+..|.++-.. +.. |..+........ ...|.++ .... +..++++++.+|.+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455666666777665444 322 222211222222 2245544 4432 57899999999999
Q ss_pred EEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCe---------ee
Q 011179 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANK---------LS 262 (491)
Q Consensus 194 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~---------~~ 262 (491)
+...+..-...... ....+.+.. ...+..+........|+..+..|.+..+... .-. ..
T Consensus 122 Kr~~l~~~~~~~r~----G~~~i~lke------~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 122 KKSKLTDFDSNRSG----GIVAVNLRD------NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEGGGGCCCCSS----CEESCBCCT------TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEeEHHHhhccccC----ceEEEEECC------CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 99887542221110 000011100 1145555555556678888999999888776 211 11
Q ss_pred EEEeccCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC-----CceeeEeccccCcEEEEEEcCCCCEEEEeeCC
Q 011179 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d 337 (491)
..+ .....|.++... +.+..++..+..|.++.-.+...... +.....+..-.+.+..+....+...++..+.+
T Consensus 192 i~L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRF-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCC-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecC-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 112 234556766665 45568889999999998887533221 11222222213345554444445567777778
Q ss_pred CcEEEEeCCC
Q 011179 338 QAIKLWDIRK 347 (491)
Q Consensus 338 g~i~iwd~~~ 347 (491)
|.+.-++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8877776654
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=81.58 E-value=31 Score=31.43 Aligned_cols=166 Identities=8% Similarity=-0.021 Sum_probs=77.1
Q ss_pred CCceEEEEEcC--CCCEEEEEEcCC----eEEEEECCCCeEEEEEeec---C-C-------CceeEEEEEECCC--CCeE
Q 011179 124 TSRAYVSQFSA--DGSLFVAGFQAS----QIRIYDVERGWKIQKDILA---K-S-------LRWTVTDTSLSPD--QRHL 184 (491)
Q Consensus 124 ~~~i~~~~~s~--dg~~la~~~~dg----~i~iwd~~~~~~~~~~~~~---~-~-------~~~~v~~~~~sp~--~~~l 184 (491)
...|.++++.| ++.+.| ++..| .|.. ..+.+......... . . ....|.++++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 45799999999 555544 44444 3433 23334333332211 0 0 1125888999872 4556
Q ss_pred EEEECCCeEEEEECCCCcccccccccccccccccccc--CCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee
Q 011179 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 185 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
.+++..+.|...+-...................+... ........+.+|.+.|. ...|+++..++.|+..+- .++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6666566554443222222221111000000000000 00011226888999873 345666655555554432 2222
Q ss_pred eEEEec-----c--------CCCeeEEEEecCCCCEEEEEeCCC
Q 011179 262 SLRILA-----H--------TSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 262 ~~~~~~-----h--------~~~v~~~~~~~~~~~~l~s~~~dg 292 (491)
-..+.. + ...+.++.+.+.+...|+.+...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222211 0 124788998755567777777655
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.23 E-value=35 Score=31.07 Aligned_cols=206 Identities=14% Similarity=0.202 Sum_probs=113.0
Q ss_pred CCceEEEEEcCCCCEEEE--EEc-------------CCeEEEEECCCC--eEEEEEeecCC---CceeEEEEEEC---CC
Q 011179 124 TSRAYVSQFSADGSLFVA--GFQ-------------ASQIRIYDVERG--WKIQKDILAKS---LRWTVTDTSLS---PD 180 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~--~~~-------------dg~i~iwd~~~~--~~~~~~~~~~~---~~~~v~~~~~s---p~ 180 (491)
--.|+.+...+++++-+. |-. .-.|.+||+.++ +.+++...... ....+..+++. |+
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 457888999988875442 211 125889999999 88877665421 23457778877 32
Q ss_pred ----CCeEEEEE-CCCeEEEEECCCCccccccccccccc-cccccccCCCCc----eecEEEEEEcCC----CCEEEEEe
Q 011179 181 ----QRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGY----SFGIFSLKFSTD----GRELVAGS 246 (491)
Q Consensus 181 ----~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h----~~~i~~~~~s~~----~~~l~~~~ 246 (491)
+.+...+. ..+-|.|+|+.+++..++....-..+ ...+.. .|. ...+..|+++|+ ++.|....
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i---~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDY---GGKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEE---TTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEE---CCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 23333333 35689999999987765543111111 000100 122 237999999998 77777766
Q ss_pred CCCeEEEEECC-----CC---eeeEEEeccCC---CeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEec--
Q 011179 247 SDDCIYVYDLE-----AN---KLSLRILAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-- 313 (491)
Q Consensus 247 ~dg~i~vwd~~-----~~---~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-- 313 (491)
..+ -++|.+. .. ..+..+ +..+ .-..+++.+.+|.++++--....|..|+.............+.
T Consensus 243 lss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d 320 (381)
T 3q6k_A 243 GSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS 320 (381)
T ss_dssp SSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC
T ss_pred CCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC
Confidence 554 2333332 11 112222 3232 3334555335677788888889999999862000111122221
Q ss_pred cccCcEEEEEEcCCCCEEEEe
Q 011179 314 GHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 314 ~~~~~i~~~~~~~~~~~l~s~ 334 (491)
..-.....+.+.++|.+.+..
T Consensus 321 ~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 321 SRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTCCSEEEEEECTTSCEEEEE
T ss_pred CCccccCeEEECCCCeEEEEE
Confidence 122235667766666544444
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.58 E-value=36 Score=35.53 Aligned_cols=38 Identities=32% Similarity=0.210 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
.+.+++..++..++++-+.|+++++|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 57788888888999999999999999999999887653
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.33 E-value=42 Score=31.54 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=61.1
Q ss_pred eEEEEEECCCCC-eEEEEECCCeEEEEECCCCcc-ccccccccccccccccccCCCCceecEEEEEEcCC----CCEEEE
Q 011179 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVA 244 (491)
Q Consensus 171 ~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----~~~l~~ 244 (491)
....|+|.|++. .|+++...|.|++++...... ..+..+.... ......+.......|+|+|+ +.+.++
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~-----~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLV-----QSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTB-----CCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCccee-----ccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 467899999996 566777899999997543211 1111111100 00000011236889999996 433333
Q ss_pred EeC--C----------CeEEEEECCC----------CeeeEEEe--ccCCCeeEEEEecCCCCEEEEEeCCC
Q 011179 245 GSS--D----------DCIYVYDLEA----------NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 245 ~~~--d----------g~i~vwd~~~----------~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg 292 (491)
-+. + ..|.-|.+.. .+.+..+. ...-....|.|. +++.++++.+..+
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGDGM 160 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECCTT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCCCC
Confidence 221 1 1344465542 12333332 111235789997 7888777766543
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=79.00 E-value=33 Score=30.19 Aligned_cols=201 Identities=10% Similarity=0.025 Sum_probs=110.6
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeE-------EEEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECCC---Ccc
Q 011179 134 ADGSLFVAGFQASQIRIYDVERGWK-------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---GTM 203 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~---~~~ 203 (491)
|+..++++.+.+|.|+--.+..-.. +... ..... ..+..+........++..+..|.++-+.... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~-~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSF-DLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECC-CCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceec-ccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4566788899999998876643210 1111 11222 2344444444556677778888877666531 100
Q ss_pred ccccccccccccccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCC-------eeeEEEeccCCCee
Q 011179 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVN 273 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~ 273 (491)
.. .-......+.+.. ...|.++...+ +..+|+..+..|.++...+..- .....+.. .+.+.
T Consensus 84 ~~--~G~~i~~~l~l~~------~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv 154 (312)
T 1suu_A 84 AS--KGQNISELINLGD------QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVT 154 (312)
T ss_dssp ------CBGGGTSCCCT------TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEE
T ss_pred cC--CCcChhhccCCCC------CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEE
Confidence 00 0000001111111 11344443332 4668889999999998887432 22222323 45666
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccC-----CCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 274 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+... .+...++..+.+|.+..+....... .+.....+.. .+.|..+..-+++..+++.+..|..+..++..
T Consensus 155 ~~~~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 155 SAEIV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEe-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 66665 4456788889999999888753211 2222223332 35566666555566788888999988888765
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.90 E-value=17 Score=37.96 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 164 (491)
...|.+++..++..++++-+.|+++|+|++.++..+.....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 34678888889999999999999999999999977766543
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.28 E-value=42 Score=29.83 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=93.1
Q ss_pred CceEEE-EEcC--CCCEEEEEEcCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEE
Q 011179 125 SRAYVS-QFSA--DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 125 ~~i~~~-~~s~--dg~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 197 (491)
..|.++ .+.+ +..++++.+.+|.++--.+..-... ......... ..+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 445444 4442 5789999999999998876541100 111112222 2455554545566788888899988888
Q ss_pred CCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-------eE--EEecc
Q 011179 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------SL--RILAH 268 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------~~--~~~~h 268 (491)
....+.............+.+.. ...|.++...+++.+|+..+..|.++.-.+..-.. +. .+..-
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~------~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNI------DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCT------TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred CcccccCcCCcCCCCeeeecCCC------CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 76211111111111111111211 12577776666677899999999998887643221 11 12222
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCeEEEEecc
Q 011179 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 269 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 300 (491)
.+.+..+... .+...++..+.+|.+..++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3445555544 344566667777887777654
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.34 E-value=42 Score=28.93 Aligned_cols=205 Identities=7% Similarity=-0.021 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEE---EECCCCeEEEEEeecCCCceeEEEEEECC--CCCeEEEEECCCeEEEEEC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRI---YDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~ 198 (491)
.+.+..+.......+|+.-+..|.++- |++..+.... + ... ...|..+.. + +..+++.++.+|.++...+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~~-~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KSR-EEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SST-TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CCC-CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 445555555445556666677887654 3443332111 2 222 335666544 4 4678999999999999987
Q ss_pred CCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------eeeEEEeccC
Q 011179 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---------KLSLRILAHT 269 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~h~ 269 (491)
..-. ... .....+.+.. ...+..+........++..+..|.++.++...- .....+. ..
T Consensus 98 ~~~~-~~~----~G~~~i~lke------gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~ 165 (276)
T 3no0_A 98 AEFE-YKA----QGMPIIKLTE------GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KN 165 (276)
T ss_dssp GGTT-TCS----TTEECSCCCT------TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TT
T ss_pred HHhh-hhc----CCeEEEecCC------CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CC
Confidence 5432 110 0001111111 114555555556668888999999888876321 1111222 23
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCC---CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEE--Ee
Q 011179 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL--WD 344 (491)
Q Consensus 270 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i--wd 344 (491)
..|..+... .++..++..+..|.++...+...... ++-+..+ ...+.+..+....+...++..+.+|.+.. ++
T Consensus 166 d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 166 DETSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp CCEEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred CEEEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 556666554 44668888999999999887533222 1222223 23344555443334456777778888777 77
Q ss_pred CCC
Q 011179 345 IRK 347 (491)
Q Consensus 345 ~~~ 347 (491)
...
T Consensus 244 ~~~ 246 (276)
T 3no0_A 244 QKD 246 (276)
T ss_dssp GGG
T ss_pred HHH
Confidence 654
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.98 E-value=94 Score=31.13 Aligned_cols=202 Identities=9% Similarity=0.028 Sum_probs=97.7
Q ss_pred eEEEE-EcCCCCEEEEEEc-C----CeEEEEECCCCeEEEEEeecCCCc-----eeEEEEEECCCCCeEEEEE-------
Q 011179 127 AYVSQ-FSADGSLFVAGFQ-A----SQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS------- 188 (491)
Q Consensus 127 i~~~~-~s~dg~~la~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~------- 188 (491)
...+. ++||+++++.+-+ . ..++++|+.+++.+.......... .....++|. |...+..+.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 34445 8999998876432 2 369999999985543211100000 011234676 333344332
Q ss_pred ----CCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCE-----EEEEe---CCCeEEEEEC
Q 011179 189 ----MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-----LVAGS---SDDCIYVYDL 256 (491)
Q Consensus 189 ----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-----l~~~~---~dg~i~vwd~ 256 (491)
....|+.|.+.+.......-...... . --.....++++++ +++.+ ....+++.|.
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKE------------Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTT------------S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCC------------c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 12468888887654322211111111 0 1223445666652 33333 2245777776
Q ss_pred CC--CeeeEEEeccCCCeeEEEEecCCCCEEEEE----------eCCCeEEEEecccccCC---CceeeE-ecc-ccCcE
Q 011179 257 EA--NKLSLRILAHTSDVNTVCFGDESGHLIYSG----------SDDNLCKVWDRRCLNVK---GKPAGV-LMG-HLEGI 319 (491)
Q Consensus 257 ~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~~~---~~~~~~-~~~-~~~~i 319 (491)
.. ++. ..+..... . .+..+ .++.+++.. ...+.|...|+...... ...... +.. ....+
T Consensus 277 ~~~~~~~-~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (711)
T 4hvt_A 277 KYKNLKL-QKINMPSD-A-TLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVF 352 (711)
T ss_dssp SSSSCEE-EECCSCTT-C-EEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEE
T ss_pred CCCCCcc-eEeecCCc-c-eEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeE
Confidence 53 332 22322111 1 12222 344444422 24667888888643110 111222 222 23457
Q ss_pred EEEEEcCCCCEEEEeeCCCc--EEEEeCCC
Q 011179 320 TFIDSRGDGRYLISNGKDQA--IKLWDIRK 347 (491)
Q Consensus 320 ~~~~~~~~~~~l~s~~~dg~--i~iwd~~~ 347 (491)
..+.+..+ .++++...++. |.++|+.+
T Consensus 353 ~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 353 NFISTTKD-RVFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp EEEEECSS-CEEEEEEETTEEEEEEECEET
T ss_pred EEEEEECC-EEEEEEEECCEEEEEEEECCC
Confidence 78888865 56666666664 66676644
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=67.34 E-value=67 Score=28.42 Aligned_cols=155 Identities=6% Similarity=-0.028 Sum_probs=87.2
Q ss_pred CCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~- 257 (491)
|+...+++.+.+|.|+--.+..-...... ...+. -.+.+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-------~~~lk------e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-------DFAMK------DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-------CCCCC------TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-------ccccC------CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHH
Confidence 56778889999999987765321110000 00000 11145455555556678888888987766542
Q ss_pred --C------CeeeEEE-e-ccCCCeeEEEEecC--CCCEEEEEeCCCeEEEEecccccCC----CceeeEeccccCcEEE
Q 011179 258 --A------NKLSLRI-L-AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVK----GKPAGVLMGHLEGITF 321 (491)
Q Consensus 258 --~------~~~~~~~-~-~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~i~~ 321 (491)
. |.++..+ . .....|..+...++ ++.+++..+..|.++...+...... +.....+... +.+..
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~ 148 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVD 148 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEE
Confidence 1 2211111 0 12334555433322 2567889999999999988644321 2222233322 45555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+........++..+.+|.+..++...
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55544556788888899888887654
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.90 E-value=50 Score=32.85 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=30.3
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 011179 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 228 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
..|.++.+ +..++++-+.|.++++|++.+++++....-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665555 467999999999999999999998876643
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.83 E-value=67 Score=31.98 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=29.8
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
.|.++.+ +..++++-+.|.++|+|++.++++.....+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 477999999999999999999987666555
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=66.72 E-value=76 Score=28.80 Aligned_cols=190 Identities=11% Similarity=0.029 Sum_probs=85.0
Q ss_pred CEEEEEEcCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEECC-CCCeEEEEECCC----eEEEEECCCCccccccccc
Q 011179 137 SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP----IVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 137 ~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~----~i~iw~~~~~~~~~~~~~~ 210 (491)
..|.+|+..| +.+++... +......... .....|.+|++.| +...|.+++..+ .|... .+.++.-......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3577777776 55555432 2222222111 1223699999998 333444454444 34332 2223221111100
Q ss_pred cccccccccccCCCC----ceecEEEEEEcC-C-CCEEEEEeCCCeEEEEECCCCeeeEEEec-----------------
Q 011179 211 EIHDGLDFSAADDGG----YSFGIFSLKFST-D-GRELVAGSSDDCIYVYDLEANKLSLRILA----------------- 267 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~----h~~~i~~~~~s~-~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------- 267 (491)
..+... ... ....|.++++.| + ...|.++...+.|+..+-. ++.-..+..
T Consensus 100 -----~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 100 -----PAFNKA-PEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp -----CCCCCC-C----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC---
T ss_pred -----ccCCCc-ccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccC
Confidence 000000 000 112588899987 2 4556666666666655432 222122211
Q ss_pred --cCCCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeE-ecc-c--------cCcEEEEEEcCC-CCEEEEe
Q 011179 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMG-H--------LEGITFIDSRGD-GRYLISN 334 (491)
Q Consensus 268 --h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~--------~~~i~~~~~~~~-~~~l~s~ 334 (491)
....+.+|.+.|.+...|+.+..++.|...+-. ....+.+.. ... + ...+.++.+.|+ ...|+.+
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg--G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA--GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST--TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC--CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 123577888864344445555444444333211 111111110 000 0 124888999885 3566666
Q ss_pred eCCC
Q 011179 335 GKDQ 338 (491)
Q Consensus 335 ~~dg 338 (491)
...+
T Consensus 251 ~~~g 254 (394)
T 3b7f_A 251 NHCG 254 (394)
T ss_dssp ETTE
T ss_pred cCCe
Confidence 5544
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=64.35 E-value=32 Score=33.48 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=38.2
Q ss_pred EEEEEcCCCCEEEEEEcC------------CeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEE
Q 011179 128 YVSQFSADGSLFVAGFQA------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 187 (491)
=-|+|+|+|++++.-..+ ..+.+.+..+++.. ++... .....++.++|+||++.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~-rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE-EEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE-EEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 558999999965543221 24566666666443 33322 234589999999999988765
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.69 E-value=86 Score=27.42 Aligned_cols=251 Identities=10% Similarity=0.015 Sum_probs=124.3
Q ss_pred CCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~- 257 (491)
|+...+++.+.+|.|+--.+..-....... .....+.+. ..+.+..+........|+..+..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~--~g~~~~~~k------e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e 72 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGG--KGKSAARIK------EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 72 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCC--CCceeeeeC------CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH
Confidence 456678889999999877765422111000 000000000 01134444444556678888888887666542
Q ss_pred --C------CeeeE---EEeccCCCeeEEEEec--CCCCEEEEEeCCCeEEEEecccccC---CCceeeEeccccCcEEE
Q 011179 258 --A------NKLSL---RILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 321 (491)
Q Consensus 258 --~------~~~~~---~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~ 321 (491)
. |..+. .+ .....|..+...+ .++.+++..+..|.++-..+..... .+.....+..+ +.+..
T Consensus 73 lp~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 73 LPEATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp SCCCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred CcCCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 2 22111 12 2234555554321 3456788999999999998753322 12222333334 55555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCCceEEEEeCCceeEeeEEEE
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+....+...++..+.+|.+..++............ +-....+..... +..+.
T Consensus 151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-------------------------Gv~~i~L~~~d~---Vv~~~ 202 (307)
T 1zi0_A 151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-------------------------GVRGIRLGEGDK---VVSLI 202 (307)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------------------CEECCCCCTTCC---EEEEE
T ss_pred EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-------------------------CeEeEEeCCCCE---EEEEE
Confidence 55444556777888888887777654211100000 000011111111 11111
Q ss_pred ecccccCCCcEEEEEecCCeEEEEECCCC---------cEEEeeccCCCCeeeeEecCCCCeEEEEeCCCcEEEEcCCC
Q 011179 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSG---------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 402 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp~~~~l~s~~~Dg~v~iw~~~~ 471 (491)
.. .++..|++.+..|.++-.++..- .....+..-.+.+..+....+...|+..+.+|.+.-.++..
T Consensus 203 ---~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 203 ---VP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ---CC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred ---Ee-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 23456888888998888776321 11122222234555554444445566667788777666654
No 368
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.55 E-value=32 Score=33.51 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=38.8
Q ss_pred eEEEEEECCCCCeEEEEECC------------CeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC
Q 011179 171 TVTDTSLSPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~ 238 (491)
..-.|+|+|.|.+++.-..+ +.+.+.+..+++...+...+. ..+++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---------------gaE~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---------------CccCcCeeECCC
Confidence 45778999999866554322 235555556666544433221 127999999999
Q ss_pred CCEEEEE
Q 011179 239 GRELVAG 245 (491)
Q Consensus 239 ~~~l~~~ 245 (491)
++.|++.
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988765
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.05 E-value=23 Score=37.90 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=31.3
Q ss_pred eEEEEEECCCCCeEEEEECCCeEEEEECCCCcccccccc
Q 011179 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 171 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 209 (491)
.+.+++..++..++++-+.|++++||++.++++.....+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345556667888999999999999999999987665544
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.91 E-value=90 Score=30.16 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCEEEEEEc------------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEECCCCCeEEEEE
Q 011179 125 SRAYVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 188 (491)
..-..|.|+++|.+.+.... ...|..++..+++. ..+.. ......++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMV-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence 44578999999987663211 12566677766743 33332 12234699999999999888764
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.10 E-value=15 Score=39.43 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=32.8
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEECCCCeEEEEEee
Q 011179 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL 164 (491)
Q Consensus 125 ~~i~~~~~s~dg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 164 (491)
..+.+++..++..+|++-+.|+++|||++.++..+.....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 4556667778889999999999999999999977766443
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.46 E-value=51 Score=31.81 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=40.1
Q ss_pred eeEEEEEECCCCCeEEEEEC------------CCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcC
Q 011179 170 WTVTDTSLSPDQRHLVYASM------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (491)
Q Consensus 170 ~~v~~~~~sp~~~~l~~~~~------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 237 (491)
.....|.|.++|.+.+.... .+.|..++..+++...+...+. ...++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---------------~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---------------CccccCCEECC
Confidence 35788999999987663321 1246666666666544432111 11689999999
Q ss_pred CCCEEEEEe
Q 011179 238 DGRELVAGS 246 (491)
Q Consensus 238 ~~~~l~~~~ 246 (491)
|++.|++.-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999888763
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.44 E-value=1.3e+02 Score=26.45 Aligned_cols=159 Identities=8% Similarity=0.044 Sum_probs=87.9
Q ss_pred CCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011179 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 179 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
++..++++.+.+|.|+--.+..-...... ......+.+. -...+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~~lk------e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ 77 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSFDLN------DGDEIVIALCVNTHDYLFMISNEGKLYLINAYE 77 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS--CCCEECCCCC------TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC--CCCceecccC------CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH
Confidence 56778899999999998776432211100 0000000000 011455555555566788888899877766532
Q ss_pred ---C------ee---eEEEeccCCCeeEEEEecC--CCCEEEEEeCCCeEEEEecccccC---CCceeeEeccccCcEEE
Q 011179 259 ---N------KL---SLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 321 (491)
Q Consensus 259 ---~------~~---~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~ 321 (491)
. .. ...+. ....|..+...+. +...++..+..|.++...+..... .+.....+.. .+.+..
T Consensus 78 ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 78 IKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTS 155 (312)
T ss_dssp SCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEE
T ss_pred CCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEE
Confidence 1 11 01121 2234555443321 466788899999999988764321 2333333443 455555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 322 IDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+....+...++..+.+|.+..+....
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55555556788888999988888754
No 374
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.15 E-value=1.4e+02 Score=27.03 Aligned_cols=51 Identities=8% Similarity=0.013 Sum_probs=31.8
Q ss_pred CCCcEEEEEecCCeEEEEECCC-C---cEEEeec--cCCCCeeeeEecCCCCeEEEE
Q 011179 408 TGQKYIYTGSHDSCVYVYDLVS-G---EQVAALK--YHTSPVRDCSWHPSQPMLVSS 458 (491)
Q Consensus 408 ~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~--~h~~~v~~~~~sp~~~~l~s~ 458 (491)
.+|.++++--..+.|..|+..+ . +....+. ..-..+.++.+.++|.+.+.+
T Consensus 285 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 285 KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 3677777777788999999865 1 1122221 122346778887777655554
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.52 E-value=1.2e+02 Score=25.99 Aligned_cols=207 Identities=10% Similarity=0.041 Sum_probs=108.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEE---CCCCeeeEEEeccCCCeeEEEEecC-CCCEEEEEeCCCeEEEEeccccc-
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYD---LEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLN- 303 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd---~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~- 303 (491)
.+..+.......+|+.-+..|.++-.. +....... +......|..+.. +. +...++..+.+|.++...+....
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 444444444455677777888766543 32221111 1233455666543 22 46789999999999999876432
Q ss_pred -CCCceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCCCCCcccccCCCccceeeeeeecCCCCCccccCCCC
Q 011179 304 -VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (491)
Q Consensus 304 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
..+.....+.. .+.+..+....+...++..+..|.+..++............ +
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~-------------------------G 156 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR-------------------------G 156 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------------------C
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC-------------------------C
Confidence 11222222332 34555555555666788888999888877644211100000 0
Q ss_pred ceEEEEeCCceeEeeEEEEecccccCCCcEEEEEecCCeEEEEECCC-------CcEEEeeccCCCCeeeeEecCCCCeE
Q 011179 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------GEQVAALKYHTSPVRDCSWHPSQPML 455 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~l 455 (491)
.....+.... .+..+.. . +++..++..+..|.++...+.. ++-+..+ ...+.+..+....+...+
T Consensus 157 v~~i~L~~~d---~vv~~~~---~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 157 VQGIKLEKND---ETSGLRI---W-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp EECCCCCTTC---CEEEEEE---E-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEE
T ss_pred EEEEccCCCC---EEEEEEE---e-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEE
Confidence 0001111111 1111111 1 1356788888999888887642 2223333 233455555444344466
Q ss_pred EEEeCCCcEEE--EcCCC
Q 011179 456 VSSSWDGDVVR--WEFPG 471 (491)
Q Consensus 456 ~s~~~Dg~v~i--w~~~~ 471 (491)
+..+.+|.+.. ++...
T Consensus 229 ~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 229 LITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCeEEEeeeCHHH
Confidence 67778888877 76543
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=49.67 E-value=1.4e+02 Score=26.39 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=105.5
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC---CCcccccccc
Q 011179 134 ADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTMESLANV 209 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~---~~~~~~~~~~ 209 (491)
|+...+++.+.+|.|+--.+..-... ..-...... ..+..+........|+..+..|.+.-+... .......-
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-- 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-- 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC--
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC--
Confidence 45667888899998887654310000 000011222 234444444456677777788876665542 11110000
Q ss_pred ccccccccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCC--------eeeEEEeccCCCeeEEEEe
Q 011179 210 TEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~ 278 (491)
......+.+.. ...|.++...+ ++.+++..+.+|.++-..+..- .....+.. .+.+..+...
T Consensus 80 ~~i~~~i~L~~------~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~ 152 (323)
T 1wp5_A 80 QHIANIIPIDR------DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT 152 (323)
T ss_dssp EEGGGTSCCCT------TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE
T ss_pred cChhhccCCCC------CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe
Confidence 00001111111 11355443323 3668999999999999887422 22222322 2556565555
Q ss_pred cCCCCEEEEEeCCCeEEEEecccccCC-----CceeeEeccccCcEEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 011179 279 DESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 347 (491)
.....++..+.+|.+..+........ +.....+. ..+.|.++..-+++. .+++.+..|..+..++..
T Consensus 153 -~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 -DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp -CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred -CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 44567778888999888876422111 11222222 234566665444444 788888888888777654
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.57 E-value=1.5e+02 Score=26.68 Aligned_cols=212 Identities=10% Similarity=0.026 Sum_probs=110.2
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEECC---------CCeEEEEEeecCCCceeEEEEE-EC--CCCCeEEEEECCC
Q 011179 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE---------RGWKIQKDILAKSLRWTVTDTS-LS--PDQRHLVYASMSP 191 (491)
Q Consensus 124 ~~~i~~~~~s~dg~~la~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~-~s--p~~~~l~~~~~d~ 191 (491)
.+.+..+........|+..+..|.++-+... .|..+........ ...|.++. .. .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 3455555555555677777788877655532 1222221111222 22455443 32 2456899999999
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------ee
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------LS 262 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~~ 262 (491)
.++...+..-...... ....+.+.. ...+..+........++..+.+|.+..++...-. ..
T Consensus 124 ~vKrt~l~e~~~~~~~----G~~ai~L~~------~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~ 193 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLAR----GKIAINLDE------GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG 193 (370)
T ss_dssp EEEEEEGGGGCSCCTT----CEESSCCCT------TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred eEEEeEHHHhhcccCC----ceEEEEeCC------CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeee
Confidence 9999886532211100 000011100 1144445555555678888899988888764321 11
Q ss_pred EEEeccCCCeeEEEEecC----------------------------------CCCEEEEEeCCCeEEEEecccccCCCc-
Q 011179 263 LRILAHTSDVNTVCFGDE----------------------------------SGHLIYSGSDDNLCKVWDRRCLNVKGK- 307 (491)
Q Consensus 263 ~~~~~h~~~v~~~~~~~~----------------------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~- 307 (491)
..+ .....|.++...+. ++..+++.+..|..+...+......+.
T Consensus 194 i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg 272 (370)
T 3l6v_A 194 IRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRG 272 (370)
T ss_dssp CCC-CTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTT
T ss_pred EEe-CCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccC
Confidence 112 22345555554421 446888999999999988763322221
Q ss_pred ----eeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 308 ----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 308 ----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
....+....+.+..+.+..+...++..+..|.+.-..+..
T Consensus 273 ~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 273 TQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 1222322334555544434445566666777666555543
No 378
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=48.56 E-value=1.3e+02 Score=29.78 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=45.0
Q ss_pred CCceEEEEEc----CCCC---EEEEEEcCCeEEEE-ECCCCeEEEEEeecCCCceeEEEEEECCCC--CeEEEEECCCeE
Q 011179 124 TSRAYVSQFS----ADGS---LFVAGFQASQIRIY-DVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIV 193 (491)
Q Consensus 124 ~~~i~~~~~s----~dg~---~la~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~i 193 (491)
....+.++.. .+|+ .+..|+.+|.|.-. ....+..+......-....+|..|.++++. .+|.+++.++.+
T Consensus 396 ~~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 396 DVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVV 475 (663)
T ss_dssp SCCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEE
T ss_pred CCceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEE
Confidence 3345677653 4554 67789999987433 444432332222222334578899999988 888888877766
Q ss_pred EE
Q 011179 194 HI 195 (491)
Q Consensus 194 ~i 195 (491)
+|
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 379
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=48.34 E-value=2.2e+02 Score=28.44 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=35.8
Q ss_pred CcEEEEEecCC--eEEEEECCCCc-EEEe-eccC-CCCeeeeEecCCCC-eEEEEeC---CCcEEEEcCC
Q 011179 410 QKYIYTGSHDS--CVYVYDLVSGE-QVAA-LKYH-TSPVRDCSWHPSQP-MLVSSSW---DGDVVRWEFP 470 (491)
Q Consensus 410 ~~~l~~~~~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~~~~sp~~~-~l~s~~~---Dg~v~iw~~~ 470 (491)
+.++++...++ .|+++|+.+++ .+.. +... .+.+.....++++. ++++.+. -+.+..+|+.
T Consensus 360 ~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 360 DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp SCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 46777777776 46777776664 2222 2211 34577677777776 4444433 3567777765
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=47.11 E-value=1.6e+02 Score=26.53 Aligned_cols=162 Identities=10% Similarity=-0.011 Sum_probs=89.9
Q ss_pred ECCCCCeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011179 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 177 ~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
+-|+..++++.+.+|.|+--.+..-....... .......+ .....+..+........|+..+..|.++-+..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g--~g~~~~~l------ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGG--RGRSAAST------KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCC--CCSEEEEC------SCCCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCC--CCceeccc------CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 34778899999999999976653211100000 00000000 01124555555556677888888888776653
Q ss_pred C---C------CeeeEEE-e-ccCCCeeEEEEec--CCCCEEEEEeCCCeEEEEecccccC---CCceeeEeccccCcEE
Q 011179 257 E---A------NKLSLRI-L-AHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGIT 320 (491)
Q Consensus 257 ~---~------~~~~~~~-~-~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~ 320 (491)
. . |..+..+ . .....|.++...+ ..+.+|+.++..|.++...+..... .+.....+.. .+.+.
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv 153 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALV 153 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEE
T ss_pred HHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEE
Confidence 2 1 2221111 0 2234555554432 2456899999999999998764432 2222233333 34455
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 321 FIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 321 ~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
.+........++..+..|.+..++...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 555544556788888888887777654
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=35.22 E-value=64 Score=30.99 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCC--EEEEEEcCCeEEEEECCCC----eEEEEEeecCCCceeEE-EEEECCCCCeEEEEECCCeEEE
Q 011179 125 SRAYVSQFSADGS--LFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 125 ~~i~~~~~s~dg~--~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~i~i 195 (491)
...+.++....+. .+..|+.+|.|.-..+..+ ..+..+.. .....+|. .|.+++++.+|.+++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v-~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV-FKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEEC-CTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEe-ecCCCccccceEEccCCCeEEEEecccccee
Confidence 3566777665554 4668899998765555422 12222222 22234675 8999999999999887765555
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.64 E-value=2.4e+02 Score=24.54 Aligned_cols=202 Identities=9% Similarity=0.018 Sum_probs=105.0
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEE------EeecCCCceeEEEEEECCCCCeEEEEECCCeEEEEECC---CCccc
Q 011179 134 ADGSLFVAGFQASQIRIYDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTME 204 (491)
Q Consensus 134 ~dg~~la~~~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~---~~~~~ 204 (491)
|+...+++.+.+|.|+--.+..-..... ....... ..+..+........|+..+..|.+.-+... .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4556788889999988766643111110 0001111 234444444445567777778876655542 11110
Q ss_pred cccccccccccccccccCCCCceecEEEEEEc---CCCCEEEEEeCCCeEEEEECCC-------CeeeEEEeccCCCeeE
Q 011179 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNT 274 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s---~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~ 274 (491)
.. -......+.+.. ...|.++... .++.+++..+.+|.++-..+.. +.....+..+ +.+..
T Consensus 80 a~--G~~i~~~l~l~~------~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 80 AR--GRPIVNLLPLEQ------DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp SC--CEEGGGTSCCCT------TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred CC--CeEhhhccCCCC------CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 00 000000111111 1145555332 3566899999999999987642 1122223333 55666
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEecccccCC-----CceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 275 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
+... .+...++..+.+|.+..+........ +.....+. ..+.|.++...+++..+++.+..|.++-.++..
T Consensus 151 ~~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 151 VDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEe-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 5555 44556778888898888876422111 11122222 235566666555566788888899888887644
No 383
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.99 E-value=2.8e+02 Score=24.93 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------eeeEEEecc-CCCeeEEEEecCCCCEEEEEeCCCeEEE
Q 011179 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 229 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~i 296 (491)
.+..++.+......++-..+|.|+.|-.... .....+... ...|..++.. ....+.-..+|.|..
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEE
Confidence 3445566666666777788999999965321 011112111 2256666653 445566678999999
Q ss_pred EecccccCC------C--ceeeEeccccCcEEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 011179 297 WDRRCLNVK------G--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 297 wd~~~~~~~------~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 347 (491)
|=......- . .+..........|..++......+.+....||.|..|-...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 965321100 0 11111111223566776654335666777899999997654
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=27.54 E-value=4.9e+02 Score=26.28 Aligned_cols=155 Identities=9% Similarity=0.028 Sum_probs=74.2
Q ss_pred eeEEEEEECCCC-CeEEEEECCCeEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeC
Q 011179 170 WTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS 247 (491)
Q Consensus 170 ~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~ 247 (491)
+.|.+|+++|.. ..+.+++..+.|...+=.......+...... .. . ....+.++++.|. ...++++..
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~-~~--~-------~~~~i~~ia~dp~~~~~i~~~~g 84 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEA-QD--M-------NIMGTESIALDPNNPDRLYLAQG 84 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCG-GG--G-------GGCSEEEEEEETTEEEEEEEEEC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCc-cc--c-------cCCceeEEEECCCCCCEEEEEeC
Confidence 479999999964 5566666667665554322222221110000 00 0 0126899999984 344544432
Q ss_pred C------CeEEEEECCCCeeeEEEecc-------C--CCeeEEEEecCCCCEEEEEeCCCeEEEEecccccCCCceeeEe
Q 011179 248 D------DCIYVYDLEANKLSLRILAH-------T--SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 248 d------g~i~vwd~~~~~~~~~~~~h-------~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
+ +.| +...+.++.-..+... . ..+..+++.|.+.+.++.+...+.| |-........+.+...
T Consensus 85 ~~~~~~~~~v-~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~ 161 (789)
T 1sqj_A 85 RYVGDEWAAF-YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSI 161 (789)
T ss_dssp SCTTSSCCEE-EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTS
T ss_pred ccCCCcccEE-EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccC
Confidence 2 333 2233344322222110 1 1356788876566677777644433 3222111122222211
Q ss_pred c---cccCcEEEEEEcCC-CCEEEEeeCC
Q 011179 313 M---GHLEGITFIDSRGD-GRYLISNGKD 337 (491)
Q Consensus 313 ~---~~~~~i~~~~~~~~-~~~l~s~~~d 337 (491)
. .....+..+.++|. +..++++..+
T Consensus 162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 162 PDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1 11245788888874 4455555544
No 385
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=26.86 E-value=5.1e+02 Score=26.20 Aligned_cols=159 Identities=14% Similarity=0.041 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeecCC----CceeEEEEEECCCC-CeEEEEECCCe----E
Q 011179 124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQ-RHLVYASMSPI----V 193 (491)
Q Consensus 124 ~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~-~~l~~~~~d~~----i 193 (491)
.+.|.+++++|.. ..+.+++..+.|...+ +.|+....+..... ....|.++++.|.. ..+..+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999963 4566666666655443 44545544322111 12369999999853 44444432211 2
Q ss_pred EEEE-CCCCccccccccccccccccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEec----
Q 011179 194 HIVD-VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILA---- 267 (491)
Q Consensus 194 ~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 267 (491)
.||. .+.|+.-....... ....... + ...+..++++|. ...++++...+.|+. ..+.++.-..+..
T Consensus 93 ~v~~S~DgG~TW~~~~~~~-----~~~~~~~-~-~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPF-----PMGANDM-G-RNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp EEEEESSTTSEEEEEECSS-----CCCTTST-T-TTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCC
T ss_pred EEEEECCCCCcceeccCCc-----ccCccCC-C-ccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccc
Confidence 3343 33333211111100 0000000 0 002445777764 345666654443322 2233332222221
Q ss_pred --cCCCeeEEEEecCCCCEEEEEeCC
Q 011179 268 --HTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 268 --h~~~v~~~~~~~~~~~~l~s~~~d 291 (491)
....+..+.+.|.++..++.+..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578888876566666666654
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.90 E-value=1.9e+02 Score=27.32 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=37.5
Q ss_pred cEEEEEecCCeEEEEECC-CCc-------EEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 411 KYIYTGSHDSCVYVYDLV-SGE-------QVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 411 ~~l~~~~~dg~i~iwd~~-~~~-------~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
..++.|+.+|.|.-.-+. .+. .+..+. ....+|..|.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 457788999976544332 211 222333 23578999999999999999998886665
No 387
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=24.19 E-value=5.6e+02 Score=25.75 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=37.9
Q ss_pred CCCceEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeEEEEEeecC-----C----CceeEEEEEECCC-CCeEEEE
Q 011179 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAK-----S----LRWTVTDTSLSPD-QRHLVYA 187 (491)
Q Consensus 123 h~~~i~~~~~s~dg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-----~----~~~~v~~~~~sp~-~~~l~~~ 187 (491)
-.+.|.+++++|.+ +.+.++...|.|...+ +.|+....+.... . ....|.+++++|. ...+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 46799999999976 5566666566554333 3454544433211 0 1235899999984 3444443
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.87 E-value=2.7e+02 Score=27.50 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEEEecCCeEE-EEECCCCc-------EEEeec--cCCCCeeeeEecCCCCeEEEEeCCCcEEE
Q 011179 412 YIYTGSHDSCVY-VYDLVSGE-------QVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 412 ~l~~~~~dg~i~-iwd~~~~~-------~~~~~~--~h~~~v~~~~~sp~~~~l~s~~~Dg~v~i 466 (491)
.++.|+.+|.|. +.-...+. .+..++ ....+|..|.++++...|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
No 389
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=21.85 E-value=5.6e+02 Score=24.90 Aligned_cols=119 Identities=15% Similarity=0.238 Sum_probs=62.9
Q ss_pred EEEEEcCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeec------CCCceeEEEEEECCCCC-eEEEEE----CCC
Q 011179 128 YVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILA------KSLRWTVTDTSLSPDQR-HLVYAS----MSP 191 (491)
Q Consensus 128 ~~~~~s~dg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~~~~v~~~~~sp~~~-~l~~~~----~d~ 191 (491)
++++|++| .++.|.- .|.+.+|+...+......... .-....|....|+-|+. -+++|. ..|
T Consensus 169 ~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~~~~G 246 (597)
T 3v4v_A 169 ISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQIG 246 (597)
T ss_dssp SSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTGGGTC
T ss_pred eeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccccCCc
Confidence 45678876 4666643 589999998765221110000 11123566666777775 355553 358
Q ss_pred eEEEEECCCCccccccccccccccccccccCCCCceecEEEEEEcCCCC-EEEEEe-------CCCeEEEEEC
Q 011179 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS-------SDDCIYVYDL 256 (491)
Q Consensus 192 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-~l~~~~-------~dg~i~vwd~ 256 (491)
.|.++....+.......+.....+ ......+....++.||. -|++|. ..|.++||--
T Consensus 247 ~V~v~~~~~~~~~~~~~l~G~~~g--------~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 247 KAYIFSIDEKELNILHEMKGKKLG--------SYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp EEEEEEECSSSEEEEEEEECSSTT--------CCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEE
T ss_pred eEEEEecCCCceeEEEEecccccC--------CCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEE
Confidence 899998765443222211110000 01112455556777774 466664 4588998843
Done!