BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011181
(491 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92546|RGP1_HUMAN Retrograde Golgi transport protein RGP1 homolog OS=Homo sapiens
GN=RGP1 PE=2 SV=1
Length = 391
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNS---PTITKI- 389
+S Y + + GTL EG CL+ ++L+T E + + RR + P+++ +
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGAGGVPSVSHVT 285
Query: 390 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 436
+ H E +TSF IP+ F T VS++W L FEF+T+ P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQP 345
Query: 437 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 464
+ WT E P+ D W LPI V
Sbjct: 346 EPTTWTGPEQVPV-----DTFSWDLPIKV 369
>sp|Q2T9P3|RGP1_BOVIN Retrograde Golgi transport protein RGP1 homolog OS=Bos taurus
GN=RGP1 PE=2 SV=1
Length = 394
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRR----NSPTITKI 389
+S Y + + GTL EG CL+ ++L+T E + + RR +P+++ I
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQYSVSLQTEERVQPEY---QRRRGAGGAPSVSHI 284
Query: 390 -QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT------------- 435
+ H E +TSF IP+ F T VS++W L FEF+T+
Sbjct: 285 THARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQ 344
Query: 436 PKHVQWTRYEH-PLLIEGRDKSEWVLPITVHA 466
P+ WT E P+ D W LPI A
Sbjct: 345 PEPATWTGPEQVPV-----DTFSWDLPIKPEA 371
>sp|Q8BHT7|RGP1_MOUSE Retrograde Golgi transport protein RGP1 homolog OS=Mus musculus
GN=Rgp1 PE=2 SV=1
Length = 391
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 334 ESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRN---SPTITKI- 389
+S Y + + GTL EG CL+ ++L+T E + + RR +P+++ +
Sbjct: 230 KSVYRLGEDVVGTLNL--GEGTVACLQFSVSLQTEERVQPEYQR--RRGTGVAPSVSHVT 285
Query: 390 QSDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTT-------------P 436
+ H E +TSF IP+ F T VS++W L FEF+T+ P
Sbjct: 286 HARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQP 345
Query: 437 KHVQWTRYEH-PLLIEGRDKSEWVLPITV 464
+ WT E P+ D W LPI V
Sbjct: 346 EPATWTGPEQVPV-----DTFSWDLPIKV 369
>sp|Q0ICW2|PANCY_SYNS3 Bifunctional pantoate ligase/cytidylate kinase OS=Synechococcus sp.
(strain CC9311) GN=panC/cmk PE=3 SV=1
Length = 494
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 356 RRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFS----IPM 411
RR EV +++E + ++ WF+ PS+ N ++T + + L+ +FL + + +
Sbjct: 210 RRLEEVGLSVEYVDVVDPWFLQPSKSNQSSLTLLAAAVRCGSTRLIDHAFLMTRSPLVAI 269
Query: 412 DGPMSFSTPYVSVQWALRFEFL 433
DGP V+ +A R +
Sbjct: 270 DGPAGAGKSTVTRAFAERLGLV 291
>sp|A2QY22|CHL1_ASPNC ATP-dependent RNA helicase chl1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=chl1 PE=3 SV=1
Length = 874
Score = 35.8 bits (81), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 25/159 (15%)
Query: 110 WLILENGLTQRESKRDLTQVEARLPLQIWVTQKGNGLLTEENQNDGIV----PATTIQMD 165
W++ +RES R +T+ L ++ T+K EE Q + P +
Sbjct: 81 WML---DFARRESSRMMTEKRKELEERLEKTRK-----EEEQQRIALENPEGPRKKQKYS 132
Query: 166 IYWKEMDGDSEWSRANDIYDGVEEGYESSRDEISSVSSYNPSKENLLKTFGSSLSLQSST 225
I E G SE A D YD E + RDE++ S +PS LL+ F +S
Sbjct: 133 IPLTESGGLSEDQFALDDYDSENEEHSKPRDELAHTSELSPSTLELLERFKGQISTAKPG 192
Query: 226 ARSSTKD-------------IPAFEGELMRLSSNVALPQ 251
+ + D + F GEL R+ ++P+
Sbjct: 193 SDDADNDEVKIFYCSRTHSQLTQFAGELRRVKMPWSIPK 231
>sp|Q9Z9G6|GATB_CHLPN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Chlamydia pneumoniae GN=gatB PE=3 SV=1
Length = 488
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 359 LEVLITLET-----SETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMDG 413
LEV + L T S +NR+ P+ S T + + V+ + LF ++G
Sbjct: 14 LEVHVELNTASKLFSSALNRFGDEPNTNISTVCTGLPGSLPVLNQSAVEKAVLFGCAVEG 73
Query: 414 PMSFSTPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKS 456
+S + + + + +P++ Q T++EHP++ GR K+
Sbjct: 74 EISLLSRFDRKSYF----YPDSPRNFQITQFEHPIIRGGRIKA 112
>sp|P55587|Y4OB_RHISN Uncharacterized protein y4oB OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02270 PE=4 SV=1
Length = 129
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 283 LTKPADDITGASPSPQAGVVEPAASEGFIR-GRSYNIRMDDQVLLRFSPKNSESTYYFSD 341
+T+P + G+SPS + V PA E F R + + DDQ+ L SP ST++
Sbjct: 1 MTEP---VRGSSPSSDSARV-PAELEAFFRIADRWRLSADDQIKLLGSP--GRSTFFKWK 54
Query: 342 MIGGTL------TFFHEEGARRCLEVLITLETSETINRWFVHPS 379
GGTL H + L +L T+E E + W P+
Sbjct: 55 KAGGTLPADTVERLSHILSIWKALRILFTIE--ERADDWIRRPN 96
>sp|Q8TFH7|SEN2_SCHPO Probable tRNA-splicing endonuclease subunit sen2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen2 PE=3 SV=1
Length = 380
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 391 SDHHEVVADLVQTSFLFSIPMDGPMSFSTPYVSVQWALRFEFLTTPKHVQW 441
S +HEV D + S + +P P+ + P + + R+ F TP+ VQW
Sbjct: 2 SKNHEVYKDALPISLAYPLP---PIILTNPLTWIPYIYRYLFRKTPRQVQW 49
>sp|Q128B6|MIAA_POLSJ tRNA dimethylallyltransferase OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=miaA PE=3 SV=1
Length = 333
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 288 DDITGASPSPQAGVVEPAASEGFIRGRSYNIRMDDQVLLRFSPKNSESTYYFSDMI---G 344
DD+ A P+ +A + AA++G+ + +D R +P +S+ ++ G
Sbjct: 119 DDMPKADPAVRAELASEAAAKGWPALHAELATVDPVTAARLAPHDSQRISRALEVFRVSG 178
Query: 345 GTLTFFHEEGARRCL---------EVLITLETSETINRWFVH 377
L+FFH++ A + + E+LI+LE E W H
Sbjct: 179 QPLSFFHQQNAAKTIADDGREERTEILISLEPQE--RSWLHH 218
>sp|Q9QZS5|SGK2_MOUSE Serine/threonine-protein kinase Sgk2 OS=Mus musculus GN=Sgk2 PE=1
SV=1
Length = 367
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 317 NIRMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSET 370
N+R V LR+S + E Y+ D + G FFH + RR LE T+E
Sbjct: 90 NVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYTAEV 143
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 77 YVIRTELPSIIPPSYRGTTIRYLYYVKSTLSARWLILENGL 117
Y+ R E+P + P++R T+ LY + +T+ RW + GL
Sbjct: 1236 YLGRIEMPEVTIPNWRPLTLILLYLISTTIVTRWKVDVAGL 1276
>sp|Q54F54|GRLP_DICDI Metabotropic glutamate receptor-like protein P OS=Dictyostelium
discoideum GN=grlP PE=2 SV=1
Length = 1407
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 230 TKDIPAFEGELMRLSSNVALPQLSAAEVLYDSSADV 265
+ + A+ G L+ S NV+LP +S +YD++ V
Sbjct: 523 SNNFAAYSGALVYFSQNVSLPNISCTNCIYDNNTAV 558
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,255,807
Number of Sequences: 539616
Number of extensions: 7372144
Number of successful extensions: 20484
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 20440
Number of HSP's gapped (non-prelim): 82
length of query: 491
length of database: 191,569,459
effective HSP length: 122
effective length of query: 369
effective length of database: 125,736,307
effective search space: 46396697283
effective search space used: 46396697283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)