Query 011181
Match_columns 491
No_of_seqs 124 out of 150
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r51_A Vacuolar protein sortin 97.9 0.002 6.9E-08 65.3 22.8 119 325-469 177-301 (340)
2 2fau_A Vacuolar protein sortin 97.4 0.017 5.8E-07 58.6 21.3 100 327-436 179-284 (341)
3 1g4m_A Beta-arrestin1; sensory 87.6 15 0.00051 37.6 15.8 133 320-471 193-358 (393)
4 1g4m_A Beta-arrestin1; sensory 86.7 0.36 1.2E-05 49.5 3.3 39 68-107 105-151 (393)
5 1suj_A CONE arrestin; sensory 82.9 0.97 3.3E-05 46.8 4.4 135 319-472 189-356 (392)
6 1suj_A CONE arrestin; sensory 72.5 93 0.0032 32.1 17.1 36 70-106 104-147 (392)
7 3ugu_A S-arrestin; arrestin fo 65.3 5.5 0.00019 41.2 4.6 32 75-106 124-163 (380)
8 2r51_A Vacuolar protein sortin 46.6 69 0.0024 32.4 8.9 89 335-432 42-138 (340)
9 2p9r_A Alpha-2-M, alpha-2-macr 46.0 96 0.0033 24.8 8.1 75 333-431 9-83 (102)
10 1xwv_A DER F II; beta sheets, 37.5 84 0.0029 26.9 6.9 34 67-103 78-111 (129)
11 3ugu_A S-arrestin; arrestin fo 31.0 1E+02 0.0034 32.0 7.2 49 320-371 209-257 (380)
12 1nep_A EPV20, BNPC2, epididyma 30.3 1.6E+02 0.0053 25.2 7.4 34 66-103 79-112 (130)
13 2z0b_A GDE5, KIAA1434, putativ 20.1 2.3E+02 0.008 24.3 6.6 47 49-102 20-75 (131)
No 1
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=97.91 E-value=0.002 Score=65.28 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=79.2
Q ss_pred EEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--e-eecccc
Q 011181 325 LLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--E-VVADLV 401 (491)
Q Consensus 325 VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~h--E-~cld~~ 401 (491)
...+.+. |..|.+||.|.|.+.|. .+.++...+.+.|--.|+.... .+...-.+..++.. + .+....
T Consensus 177 ~Ie~~~~--ks~y~lgd~I~G~I~f~--~s~i~Ik~iel~LiR~Et~~~~------~~~~~e~~~i~k~eImdG~p~rge 246 (340)
T 2r51_A 177 HIEFEYN--KSKYHLKDVIVGKIYFL--LVRIKIKHMEIDIIKRETTGTG------PNVYHENDTIAKYEIMDGAPVRGE 246 (340)
T ss_dssp EEEEEES--CSEEETTCEEEEEEEEE--EECSCEEEEEEEEEEEEEEEET------TEEEEEEEEEEEEEEEESCCCTTC
T ss_pred EEEEEEC--cccccCCCeEEEEEEEE--EeeceeEEEEEEEEEEEEEecC------CCeeEEEEEEEEEEEecCCccCCC
Confidence 4566774 99999999999999996 4678888888999888887311 00111112222222 1 112222
Q ss_pred eeeEEecCC-CCCCCceE--eCceeEEEEEEEEEEecCCCcccccccCCCCcCCceEEEEEeeeEEeCCCC
Q 011181 402 QTSFLFSIP-MDGPMSFS--TPYVSVQWALRFEFLTTPKHVQWTRYEHPLLIEGRDKSEWVLPITVHAPPS 469 (491)
Q Consensus 402 rT~FsL~IP-~~ATPqF~--TdiVsLKW~LRFEFVts~~~~~wqa~Edp~~L~e~EtFeW~LPItVlPt~P 469 (491)
..+|.|.+| .+.||+|. +..|++++.|.+..+.... ....-.+||+++=..+
T Consensus 247 ~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~----------------~~~~kq~pI~L~R~~~ 301 (340)
T 2r51_A 247 SIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEE----------------RRYFKQQEVVLWRKGD 301 (340)
T ss_dssp EEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEEETTC----------------CEEEEEEEEEEECCC-
T ss_pred EEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEEeCCC----------------cEEEEEeeEEEEECCC
Confidence 347888888 58999999 9999999999987666431 1345567888885544
No 2
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.017 Score=58.64 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=67.5
Q ss_pred EEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEe--eeee-eccccee
Q 011181 327 RFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSD--HHEV-VADLVQT 403 (491)
Q Consensus 327 rvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe--~hE~-cld~~rT 403 (491)
.|.+ +|..|.+||.|.|.+.|. .+.++...+.+.|.-.|+.... .+...-.+...+ ..+- +......
T Consensus 179 eF~~--~ks~y~l~d~I~G~I~f~--~s~i~Ik~iel~LiR~Et~~~~------~~~~~e~~~i~k~eImDG~p~rge~I 248 (341)
T 2fau_A 179 EFEY--NKSKYHLKDVIVGKIYFL--LVRIKIQHMELQLIKKEITGIG------PSTTTETETIAKYEIMDGAPVKGESI 248 (341)
T ss_dssp EEEE--SCSEEETTCEEEEEEEEE--EECSCEEEEEEEEEEEEEESCG------GGCEEEEEEEEEEECCCC------CE
T ss_pred EEEE--ccccccCCCeEEEEEEEE--EeccceEEEEEEEEEEEEEcCC------CCeeeEEEEEEEEEEeCCCccCCCEE
Confidence 3446 499999999999999996 3678888888889888886311 001111111211 1111 1122234
Q ss_pred eEEecCC-CCCCCceE--eCceeEEEEEEEEEEecC
Q 011181 404 SFLFSIP-MDGPMSFS--TPYVSVQWALRFEFLTTP 436 (491)
Q Consensus 404 ~FsL~IP-~~ATPqF~--TdiVsLKW~LRFEFVts~ 436 (491)
+|.|.+| ...||+|. +..|++++.|++..+...
T Consensus 249 Pirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~ 284 (341)
T 2fau_A 249 PIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEE 284 (341)
T ss_dssp EEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETT
T ss_pred EEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCC
Confidence 7899999 58999999 999999999999887755
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=87.58 E-value=15 Score=37.60 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=79.6
Q ss_pred eCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeee--eee
Q 011181 320 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHH--EVV 397 (491)
Q Consensus 320 rngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~h--E~c 397 (491)
+.|..-+.+.|. |..|..||+|...++.++ .+...+-.+.+.|.-...+-- |.. . . .+++.++.. +-.
T Consensus 193 ~sG~l~l~~sld--k~~Y~pGE~I~v~v~I~N-~S~k~Vk~Ikv~L~Q~~~~~~-~s~---~--~-~k~~Va~~e~~~~V 262 (393)
T 1g4m_A 193 SDKPLHLEASLD--KEIYYHGEPISVNVHVTN-NTNKTVKKIKISVRQYADICL-FNT---A--Q-YKCPVAMEEADDTV 262 (393)
T ss_dssp SSSCEEEEEEES--CSEEETTCCEEEEEEEEE-CSSCCEEEEEEEEEEEEEECS-SBC---E--E-EEEEEEEEEECCCB
T ss_pred cCCCEEEEEEEC--CceEcCCCEEEEEEEEEc-CCCCEEeEEEEEEEEEEEEEE-ecC---C--c-eEEEEEEEecCCcC
Confidence 467788889995 999999999999999985 577778888888877653310 000 0 1 112222221 211
Q ss_pred cccc--eeeEEecCCCCCC-----------------Cc-eEeCcee-----------EEEEEEEEEEecCCCcccccccC
Q 011181 398 ADLV--QTSFLFSIPMDGP-----------------MS-FSTPYVS-----------VQWALRFEFLTTPKHVQWTRYEH 446 (491)
Q Consensus 398 ld~~--rT~FsL~IP~~AT-----------------Pq-F~TdiVs-----------LKW~LRFEFVts~~~~~wqa~Ed 446 (491)
.... +..|.| +|.-++ .. -.+.+++ +...|+++..++. +... .+
T Consensus 263 ~~gs~~~~~~~L-~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~-gg~~---~~ 337 (393)
T 1g4m_A 263 APSSTFCKVYTL-TPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-GGLL---GD 337 (393)
T ss_dssp CTTEEEEEEEEE-CCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECC-C--------
T ss_pred CCCCEEeeEEEE-cCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecC-CCcc---cc
Confidence 1111 224555 455432 12 3345677 9999999988864 2100 01
Q ss_pred CCCcCCceEEEEEeeeEEeCCCCCC
Q 011181 447 PLLIEGRDKSEWVLPITVHAPPSGA 471 (491)
Q Consensus 447 p~~L~e~EtFeW~LPItVlPt~P~~ 471 (491)
+ -.......|||+|..+.|..
T Consensus 338 ---~-~~~~l~~~lPi~i~~p~p~~ 358 (393)
T 1g4m_A 338 ---L-ASSDVAVELPFTLMHPKPKE 358 (393)
T ss_dssp -------CEEEEEEEEEEECCCCC-
T ss_pred ---c-ccccEEEEeCEEEecCCCCc
Confidence 1 22467899999999877775
No 4
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=86.69 E-value=0.36 Score=49.54 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=33.1
Q ss_pred eecCCCceeEEEEEecCCCCCCCCC--------cceEEEEEEEEeecc
Q 011181 68 IVSSDATKSYVIRTELPSIIPPSYR--------GTTIRYLYYVKSTLS 107 (491)
Q Consensus 68 ~l~~g~~ksy~~r~~LP~~lPpSy~--------G~~ir~~Y~l~~~~~ 107 (491)
++.+| .-+|-|+++||..||+||. |+.-.+.|.|+.++-
T Consensus 105 ~~~~G-~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~ 151 (393)
T 1g4m_A 105 IKKLG-EHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCA 151 (393)
T ss_dssp HHHSC-TTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEE
T ss_pred hccCC-ceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEc
Confidence 34477 4579999999999999998 999999999987663
No 5
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=82.86 E-value=0.97 Score=46.76 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=80.8
Q ss_pred EeCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEee--eee
Q 011181 319 RMDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDH--HEV 396 (491)
Q Consensus 319 nrngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~--hE~ 396 (491)
-.+|..-++++|- |..|..||+|...++.++ ++...+-.+.+.|.-.-.+-- |. ....+++.++. -|-
T Consensus 189 ~ssGpl~l~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v~l-~s------~~~~k~~Va~~e~~e~ 258 (392)
T 1suj_A 189 LSDRPLHLEASLD--KEIYYHGEPINVNVKINN-TTGKIVKKIKIIVEQVTDVVL-FS------LDKYVKTVCAEETNDT 258 (392)
T ss_dssp ETTEEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSEEEEEEEEEEEEEEECS-SS------CCEEEEEEEEEECCCC
T ss_pred ecCCCEEEEEEeC--CccccCCCEEEEEEEEEC-CCCCcEeEEEEEEEEEEEEEE-ec------CCcEEEEEEEEecCCC
Confidence 3467788899995 999999999999999986 566677778887776555420 00 01112333322 111
Q ss_pred ecccc--eeeEEecCCCCC-----------------CCceE-eCc-----------eeEEEEEEEEEEecCCCccccccc
Q 011181 397 VADLV--QTSFLFSIPMDG-----------------PMSFS-TPY-----------VSVQWALRFEFLTTPKHVQWTRYE 445 (491)
Q Consensus 397 cld~~--rT~FsL~IP~~A-----------------TPqF~-Tdi-----------VsLKW~LRFEFVts~~~~~wqa~E 445 (491)
+.-.. +..|.|. |.-+ ...+. +.+ +.+...|+.+.+++..+ ...
T Consensus 259 V~pgst~~k~~~L~-P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg----~~~ 333 (392)
T 1suj_A 259 VAANSTLSKTFSVT-PMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGG----ILG 333 (392)
T ss_dssp BCTTEEEEEEEEEC-CCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTS----STT
T ss_pred cCCCCEEEEEEEEe-ccccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCc----ccc
Confidence 11111 1244442 3332 11121 111 79999999999996511 011
Q ss_pred CCCCcCCceEEEEEeeeEEeCCCCCCC
Q 011181 446 HPLLIEGRDKSEWVLPITVHAPPSGAP 472 (491)
Q Consensus 446 dp~~L~e~EtFeW~LPItVlPt~P~~~ 472 (491)
+ + -.......||+++..+.|...
T Consensus 334 ~---~-~s~d~~velPf~L~~p~P~~~ 356 (392)
T 1suj_A 334 D---L-TSSDVAVELPLTLMHPKPSDD 356 (392)
T ss_dssp C---C-CCEEEEEEEEEEEECCCCCCC
T ss_pred c---c-cccCeeEEECeEEeCCCCCCc
Confidence 1 2 235678999999998888763
No 6
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=72.54 E-value=93 Score=32.14 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=30.8
Q ss_pred cCCCceeEEEEEecCCCCCCCC--------CcceEEEEEEEEeec
Q 011181 70 SSDATKSYVIRTELPSIIPPSY--------RGTTIRYLYYVKSTL 106 (491)
Q Consensus 70 ~~g~~ksy~~r~~LP~~lPpSy--------~G~~ir~~Y~l~~~~ 106 (491)
.+| .-+|-|.|+||..||||+ .|+.-.+.|.|+..+
T Consensus 104 ~~G-~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i 147 (392)
T 1suj_A 104 KLG-AHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFC 147 (392)
T ss_dssp HHC-SSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEE
T ss_pred ccc-CeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEE
Confidence 445 456999999999999997 799999999998655
No 7
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=65.34 E-value=5.5 Score=41.25 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred eeEEEEEecCCCCCCCC--------CcceEEEEEEEEeec
Q 011181 75 KSYVIRTELPSIIPPSY--------RGTTIRYLYYVKSTL 106 (491)
Q Consensus 75 ksy~~r~~LP~~lPpSy--------~G~~ir~~Y~l~~~~ 106 (491)
-+|-|.|+||..||+|+ .||...+.|.|++.+
T Consensus 124 nayPF~f~LP~~lPsSv~LQp~p~d~Gk~cgV~YeVKafi 163 (380)
T 3ugu_A 124 NTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFA 163 (380)
T ss_dssp TEEEEEECCCSSCCCSEEECCCTTCCSCCEEEEEEEEEEE
T ss_pred CceeEEEeCCCCCCCEEEeccCCccCCCccceEEEEEEEE
Confidence 58999999999999997 599999999998543
No 8
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=46.58 E-value=69 Score=32.39 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCcccCccEEEEEEecCC--CCceeEEEEEEEEEE-eeeecCCccCCCCCCCCceeeEEEeeeee----ecccce-eeEE
Q 011181 335 STYYFSDMIGGTLTFFHE--EGARRCLEVLITLET-SETINRWFVHPSRRNSPTITKIQSDHHEV----VADLVQ-TSFL 406 (491)
Q Consensus 335 paYRLGEdI~Gt~DFt~s--~a~irC~qVSVSLES-eE~Inp~~a~~S~~ssr~trKVhAe~hE~----cld~~r-T~Fs 406 (491)
|.|..||+|.|.+..+.. +..++...+.+.++- .|..... .+ .. .......+. .+-..+ -+|.
T Consensus 42 pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~------~~--~~-~f~~~~~eL~~pG~L~~G~~fpF~ 112 (340)
T 2r51_A 42 FLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDR------GN--HH-EFVSLVKDLARPGEITQSQAFDFE 112 (340)
T ss_dssp EEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGT------TC--CE-EEEEEEEEEECSEEECSCEEEEEE
T ss_pred CcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecC------CC--cE-EEEEEEEEecCCCccCCCcEEeeE
Confidence 469999999999888632 234555555555553 2332110 11 00 111111222 232333 4889
Q ss_pred ecCCCCCCCceEeCceeEEEEEEEEE
Q 011181 407 FSIPMDGPMSFSTPYVSVQWALRFEF 432 (491)
Q Consensus 407 L~IP~~ATPqF~TdiVsLKW~LRFEF 432 (491)
+.+|....++|.=..+.++..||.++
T Consensus 113 F~lp~~l~eSy~G~~g~IrY~vkv~i 138 (340)
T 2r51_A 113 FTHVEKPYESYTGQNVKLRYFLRATI 138 (340)
T ss_dssp ECSBCCCSCCEECSSEEEEEEEEEEE
T ss_pred eCCCCCCCcCeEeeeEEEEEEEEEEE
Confidence 99999999999999999999998764
No 9
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=45.96 E-value=96 Score=24.78 Aligned_cols=75 Identities=8% Similarity=-0.012 Sum_probs=38.5
Q ss_pred CCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeeecCCccCCCCCCCCceeeEEEeeeeeecccceeeEEecCCCC
Q 011181 333 SESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETINRWFVHPSRRNSPTITKIQSDHHEVVADLVQTSFLFSIPMD 412 (491)
Q Consensus 333 pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~Inp~~a~~S~~ssr~trKVhAe~hE~cld~~rT~FsL~IP~~ 412 (491)
-|+.||.||+|-..+-..+ ...+-..-. .+ +.|..+|. + +...+............+.+.+|.+
T Consensus 9 Dr~iYrPGetV~~~~~~~~--~~~~p~~~~-~~-~v~l~dp~-----g-------~~v~~~~~~~~~~G~~~~~f~Lp~~ 72 (102)
T 2p9r_A 9 DKSIYKPGQTVKFRVVSMD--ENFHPLNEL-IP-LVYIQDPK-----G-------NRIAQWQSFQLEGGLKQFSFPLSSE 72 (102)
T ss_dssp SCSEECTTCEEEEEEEEEC--GGGCBCCCE-EE-EEEEECTT-----S-------CEEEEEEEEECBTTEEEEEEECCSS
T ss_pred CCcccCCCCEEEEEEEEEC--CCCcCCCCC-ce-EEEEECCC-----C-------CEEEEEEeecCCCCEEEEEEECCCC
Confidence 4999999999976654432 222211101 01 33444442 1 1122222222333445778888888
Q ss_pred CCCceEeCceeEEEEEEEE
Q 011181 413 GPMSFSTPYVSVQWALRFE 431 (491)
Q Consensus 413 ATPqF~TdiVsLKW~LRFE 431 (491)
+... .|.|+..
T Consensus 73 ~~~G--------~y~i~~~ 83 (102)
T 2p9r_A 73 PFQG--------SYKVVVQ 83 (102)
T ss_dssp CCCE--------EEEEEEE
T ss_pred CCCe--------eEEEEEE
Confidence 7643 5777665
No 10
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=37.54 E-value=84 Score=26.91 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=26.3
Q ss_pred eeecCCCceeEEEEEecCCCCCCCCCcceEEEEEEEE
Q 011181 67 QIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVK 103 (491)
Q Consensus 67 ~~l~~g~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l~ 103 (491)
=-|.+|+..+|.+.+.+++..|+ ++.+.+.+.|+
T Consensus 78 CPl~~G~~~~y~~~~~v~~~~P~---v~~~~v~~~L~ 111 (129)
T 1xwv_A 78 CPLVKGQQYDAKYTWNVPKIAPK---SENVVVTVKLV 111 (129)
T ss_dssp SSBCTTCEEEEEEEEECCTTSCC---BSCEEEEEEEE
T ss_pred CcccCCEEEEEEEEeEecccCCC---CceEEEEEEEE
Confidence 45889999999999999998886 22266666664
No 11
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=30.97 E-value=1e+02 Score=32.01 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=36.6
Q ss_pred eCCEEEEEEEccCCCCCcccCccEEEEEEecCCCCceeEEEEEEEEEEeeee
Q 011181 320 MDDQVLLRFSPKNSESTYYFSDMIGGTLTFFHEEGARRCLEVLITLETSETI 371 (491)
Q Consensus 320 rngq~VarvsL~~pKpaYRLGEdI~Gt~DFt~s~a~irC~qVSVSLESeE~I 371 (491)
.+|..-++++|- |..|..||.|...++.++ ++...+-.+.+.|.-.-.+
T Consensus 209 ssGpl~L~vsLd--K~~Y~pGE~I~V~v~I~N-~Ssk~Vk~Ikv~L~Q~~~v 257 (380)
T 3ugu_A 209 SDKPLRLAVSLS--KEIYYHGEPIPVTVAVTN-STEKTVKKIKVLVEQVTNV 257 (380)
T ss_dssp CCCEEEEEEEES--CSEEETTCCEEEEEEEEE-CSSSCEEEEEEEEEEEEEE
T ss_pred cCCCEEEEEEeC--CccCcCCCEEEEEEEEEc-CCCCeEeEEEEEEEEEEEE
Confidence 678888899995 999999999999999985 4545555555555544443
No 12
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=30.26 E-value=1.6e+02 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=24.3
Q ss_pred eeeecCCCceeEEEEEecCCCCCCCCCcceEEEEEEEE
Q 011181 66 NQIVSSDATKSYVIRTELPSIIPPSYRGTTIRYLYYVK 103 (491)
Q Consensus 66 ~~~l~~g~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l~ 103 (491)
.=-|.+|+..+|.+.+..++..|+ .+..+.+.|+
T Consensus 79 ~CPl~~G~~~~y~~~lpV~~~~P~----~~~~v~~~L~ 112 (130)
T 1nep_A 79 RCPIEKDKTYNYVNKLPVKNEYPS----IKVVVEWELT 112 (130)
T ss_dssp CSSBCTTCEEEEEEEEECCTTSCS----SEEEEEEEEE
T ss_pred cCcccCCcEEEEEEEeEecccCCC----ccEEEEEEEE
Confidence 345889999999988877788886 2355555553
No 13
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=20.13 E-value=2.3e+02 Score=24.31 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=35.5
Q ss_pred ccCceeEeecCCcceee----e-eeecCC----CceeEEEEEecCCCCCCCCCcceEEEEEEE
Q 011181 49 FPGEFAFLDISASKLIS----N-QIVSSD----ATKSYVIRTELPSIIPPSYRGTTIRYLYYV 102 (491)
Q Consensus 49 ~~ge~~f~~~~~pslvs----~-~~l~~g----~~ksy~~r~~LP~~lPpSy~G~~ir~~Y~l 102 (491)
-.||+++|--+.|.|=. + +.|... +.-.+.+.+.||. |..+.|+|.+
T Consensus 20 ~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~-------~~~~eYKyvi 75 (131)
T 2z0b_A 20 LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSR-------GVSVQYRYFK 75 (131)
T ss_dssp CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECT-------TCCEEEEEEE
T ss_pred CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCC-------CCcEEEEEEE
Confidence 46999999999876632 1 455555 6677888888864 6789999998
Done!