BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011182
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A1T|A Chain A, Structure Of The Hiv-1 Nucleocapsid Protein Bound To The
Sl3 Psi-Rna Recognition Element, Nmr, 25 Structures
pdb|1MFS|A Chain A, Dynamical Behavior Of The Hiv-1 Nucleocapsid Protein; Nmr,
30 Structures
Length = 55
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 15 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQ 53
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH AK+C K G C KCG GH M C
Sbjct: 11 KTVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 49
>pdb|2M3Z|A Chain A, Nmr Solution Structure Of Hiv-1 Nucleocapsid Protein In
Complex With An Inhibitor Displaying A 2 Inhibitors:1 Nc
Stoichiometry
Length = 55
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 15 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQ 53
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH AK+C K G C KCG GH M C
Sbjct: 11 KTVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 49
>pdb|1F6U|A Chain A, Nmr Structure Of The Hiv-1 Nucleocapsid Protein Bound To
Stem-Loop Sl2 Of The Psi-Rna Packaging Signal.
Implications For Genome Recognition
Length = 56
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 15 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQ 53
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH AK+C K G C KCG GH M C
Sbjct: 11 KTVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 49
>pdb|1AAF|A Chain A, Nucleocapsid Zinc Fingers Detected In Retroviruses: Exafs
Studies On Intact Viruses And The Solution-State
Structure Of The Nucleocapsid Protein From Hiv-1
Length = 55
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ Q
Sbjct: 15 CFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQMKDCTERQ 53
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 15 CFNCGKEGHIAKNCRAPRKRG------CWKCGKEGHQMKDC 49
>pdb|2L4L|A Chain A, Structural Insights Into The Ctar Dna Recognition By The
Hiv-1 Nucleocapsid Protein: Role Of Sugar Deoxyriboses
In The Binding Polarity Of Nc
Length = 45
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 5 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQ 43
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 5 CFNCGKEGHTARNCRAPRKKG------CWKCGKEGHQMKDC 39
>pdb|2EXF|A Chain A, Solution Structure Of The Hiv-1 Nucleocapsid (Ncp7(12-55))
Complexed With The Dna (-) Primer Binding Site
pdb|2JZW|A Chain A, How The Hiv-1 Nucleocapsid Protein Binds And Destabilises
The (-)primer Binding Site During Reverse Transcription
Length = 44
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 4 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQ 42
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 4 CFNCGKEGHTARNCRAPRKKG------CWKCGKEGHQMKDC 38
>pdb|1BJ6|A Chain A, 1h Nmr Of (12-53) Ncp7D(ACGCC) COMPLEX, 10 STRUCTURES
pdb|1ESK|A Chain A, Solution Structure Of Ncp7 From Hiv-1
Length = 42
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH A NCR+ RKK C+ CG H ++ C++ Q
Sbjct: 4 CFNCGKEGHTARNCRAP--RKKGCWKCGKEGHQMKDCTERQ 42
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 4 CFNCGKEGHTARNCRAPRKKG------CWKCGKEGHQMKDC 38
>pdb|2A51|A Chain A, Structure Of The (13-51) Domain Of The Nucleocapsid
Protein Ncp8 From Sivlhoest
Length = 39
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
TC+NCG+ GH A CR R++ C+ CGS EH QC K
Sbjct: 2 TCFNCGKPGHTARMCRQP--RQEGCWNCGSKEHRFAQCPK 39
>pdb|1Q3Y|A Chain A, Nmr Structure Of The Cys28his Mutant (D Form) Of The
Nucleocapsid Protein Ncp7 Of Hiv-1.
pdb|1Q3Z|A Chain A, Nmr Structure Of The Cys28his Mutant (e Form) Of The
Nucleocapsid Protein Ncp7 Of Hiv-1
Length = 42
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH A N R+ RKK C+ CG H ++ C++ Q
Sbjct: 4 CFNCGKEGHTARNHRAP--RKKGCWKCGKEGHQMKDCTERQ 42
>pdb|2BL6|A Chain A, Solution Structure Of The Zn Complex Of Eiav Ncp11(22-58)
Peptide, Including Two Cchc Zn-Binding Motifs
Length = 37
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC 219
QTCYNCG+ GH++ CR+ K CF C H +QC
Sbjct: 1 QTCYNCGKPGHLSSQCRAP----KVCFKCKQPGHFSKQC 35
>pdb|2EC7|A Chain A, Solution Structure Of Human Immunodificiency Virus Type-2
Nucleocapsid Protein
Length = 49
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ 223
C+NCG+EGH A CR+ R++ C+ CG H + +C + Q
Sbjct: 9 CWNCGKEGHSARQCRAP--RRQGCWKCGKTGHVMAKCPERQ 47
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GH A+ C + G C KCG +GH M C
Sbjct: 9 CWNCGKEGHSARQCRAPRRQG------CWKCGKTGHVMAKC 43
>pdb|2LLI|A Chain A, Low Resolution Structure Of Rna-Binding Subunit Of The
Tramp Complex
Length = 124
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C NC + GH+ +C + C CG+ + H R C KA C C + GH CP K
Sbjct: 7 CNNCSQRGHLKKDCPHII-----CSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHK 61
Query: 242 HK 243
K
Sbjct: 62 WK 63
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 222 AQDCFICKKGGHRAKDCP-----------DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
A C C + GH KDCP D + A C KC + GH C + +
Sbjct: 4 APKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKW- 62
Query: 271 LDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGET 330
K+VQC +C+ H S RC + + + +A + +
Sbjct: 63 ----KKVQCTLCKSKKH--------------SKERCPSIWRAYILVDDNEKA----KPKV 100
Query: 331 VEASPSSCYNCGAEGHFAREC 351
+ CYNCG +GHF +C
Sbjct: 101 LPFHTIYCYNCGGKGHFGDDC 121
>pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD 224
+G CYNCG H A C+ + KK C C S+ H V C KAQ
Sbjct: 95 KGGDRCYNCGGLDHHAKECKLPPQPKK-CHFCQSINHMVASCPLKAQQ 141
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICK 229
F +G ++ G G + K C+ CG L+H ++C + + C C+
Sbjct: 67 FKKSAKGLESIRVTGPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQ 126
Query: 230 KGGHRAKDCPDKHKSG 245
H CP K + G
Sbjct: 127 SINHMVASCPLKAQQG 142
>pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD 224
+G CYNCG H A C+ + KK C C S+ H V C KAQ
Sbjct: 93 KGGDRCYNCGGLDHHAKECKLPPQPKK-CHFCQSINHMVASCPLKAQQ 139
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICK 229
F +G ++ G G + K C+ CG L+H ++C + + C C+
Sbjct: 65 FKKSAKGLESIRVTGPGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQ 124
Query: 230 KGGHRAKDCPDKHKSG 245
H CP K + G
Sbjct: 125 SINHMVASCPLKAQQG 140
>pdb|1HVN|E Chain E, Zinc-And Sequence-Dependent Binding To Nucleic Acids By
The N-Terminal Zinc Finger Domain Of The Hiv-1
Nucleocapsid Protein: Nmr Structure Of The Complex With
The Psi-Site Analog, DACGCC
pdb|1HVO|E Chain E, Zinc-And Sequence-Dependent Binding To Nucleic Acids By
The N-Terminal Zinc Finger Domain Of The Hiv-1
Nucleocapsid Protein: Nmr Structure Of The Complex With
The Psi-Site Analog, DACGCC
pdb|2ZNF|A Chain A, High-Resolution Structure Of An Hiv Zinc Fingerlike Domain
Via A New Nmr-Based Distance Geometry Approach
Length = 18
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 183 CYNCGEEGHMAVNCRS 198
C+NCG+EGH+A NCR+
Sbjct: 3 CFNCGKEGHIARNCRA 18
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I
(Tag)
pdb|1NKU|A Chain A, Nmr Solution Structure Of Zinc-Binding Protein 3-
Methyladenine Dna Glycosylase I (Tag)
pdb|1P7M|A Chain A, Solution Structure And Base Perturbation Studies Reveal A
Novel Mode Of Alkylated Base Recognition By 3-
Methyladenine Dna Glycosylase I
Length = 187
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 412 QRGGWITDDPGDISYGKPKRNHWRSPGTPSSKAHKISAITSGGHFSSPQSSIKRNSHHRF 471
+R GW++ DP I+Y N W P T S K ++ + S + +K+ ++R
Sbjct: 2 ERCGWVSQDPLYIAY---HDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58
Query: 472 SASRFD 477
+FD
Sbjct: 59 CFHQFD 64
>pdb|3NYB|B Chain B, Structure And Function Of The Polymerase Core Of Tramp, A
Rna Surveillance Complex
Length = 83
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 338 CYNCGAEGHFARECVSSSKVRKRNIDASTPT 368
CYNCG +GHF +C R N D S T
Sbjct: 49 CYNCGGKGHFGDDCKEKRSSRVPNEDGSAFT 79
>pdb|2LI8|A Chain A, The Solution Structure Of The Lin28-Znf Domains Bound To
Aggagau Of Pre-Let-7 Mirna
Length = 74
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD 224
CYNCG H A C+ + KK C C S+ H V C KAQ
Sbjct: 27 CYNCGGLDHHAKECKLPPQPKK-CHFCQSISHMVASCPLKAQQ 68
>pdb|2CQF|A Chain A, Solution Structure Of The Zinc-Finger Domain In Lin-28
Length = 63
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQ 223
CYNCG H A C+ + KK C C S+ H V C KAQ
Sbjct: 10 CYNCGGLDHHAKECKLPPQPKK-CHFCQSISHMVASCPLKAQ 50
>pdb|2IHX|A Chain A, Solution Structure Of The Rous Sarcoma Virus Nucleocapsid
Protein:upsi Rna Packaging Signal Complex
Length = 61
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSK 221
CY CG GH C R + ++ C +C + H +QC K
Sbjct: 7 CYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRK 48
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
C+ C GH CP K KSG + + C C GH+ CR
Sbjct: 7 CYTCGSPGHYQAQCPKKRKSG-NSRERCQLCNGMGHNAKQCR 47
>pdb|1NCP|N Chain N, Structural Characterization Of A 39 Residue Synthetic
Peptide Containing The Two Zinc Binding Domains From The
Hiv-1 P7 Nucleocapsid Protein By Cd And Nmr Spectroscopy
Length = 17
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 183 CYNCGEEGHMAVNCR 197
C+NCG+EGH A NCR
Sbjct: 3 CFNCGKEGHTARNCR 17
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,880,121
Number of Sequences: 62578
Number of extensions: 539255
Number of successful extensions: 1278
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 142
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)