BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011182
(491 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 84/208 (40%), Gaps = 39/208 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C KCG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGHTGLHWNSCMQACARSRGE 329
+ CY C GH+ C N G+ +C++CG GH + C +G
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHI-------SRDCPNGQGG 189
Query: 330 TVEASPSSCYNCGAEGHFARECVSSSKV 357
A CY CG GH +REC S+
Sbjct: 190 YSGAGDRKCYKCGESGHMSRECPSAGST 217
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K + C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACAR 325
+ +CY C GH+ C + G+ +C++CG+ GH C +A
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHI---SRECPEA-GG 242
Query: 326 SRGETVEASPSSCYNCGAEGHFARECVSS 354
S G + +CY CG GH +R+C SS
Sbjct: 243 SYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 82/205 (40%), Gaps = 43/205 (20%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD--------- 224
CYNCGE GH++ +C C+ CG H R C+ A +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 225 ----CFICKKGGHRAKDCPDKH-KSGFQNAQV------CLKCGDSGHDMFSCRNSYSLDD 273
C+ C GH A+DC K +G Q V C CGD GH C + +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 274 LKEV-----QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRG 328
++ CY C GH+ + P C++CG GH C Q RG
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATKRQP-SRGCYQCGGSGHL---ARDCDQ-----RG 272
Query: 329 ETVEASPSSCYNCGAEGHFARECVS 353
+ ++CY CG EGHFAREC S
Sbjct: 273 SGGGGNDNACYKCGKEGHFARECSS 297
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G TCY+CG GH+A +C A KR+ ++ C+ C GH A+DC
Sbjct: 228 GSGTCYSCGGVGHIARDC--ATKRQ-----------------PSRGCYQCGGSGHLARDC 268
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
+ G N C KCG GH
Sbjct: 269 DQRGSGGGGNDNACYKCGKEGH 290
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 303 CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRKR 360
C+ CG+LGH C GE CYNCG GHFAR+C S+ +R
Sbjct: 102 CYNCGELGHI---SKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQR 156
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 78/184 (42%), Gaps = 58/184 (31%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C ++ + C+ CG
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCG------------------ 79
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 80 -RGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 129
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFA 348
D +V C+RCG+ GH ++ + + S +CY CG GH A
Sbjct: 130 ----QKDCT--KVKCYRCGETGHVAINCS--------------KTSEVNCYRCGESGHLA 169
Query: 349 RECV 352
REC
Sbjct: 170 RECT 173
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 48/189 (25%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGA 343
FGH+ D +V C+RCG+ GH ++ + + S +CY CG
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAINCS--------------KTSEVNCYRCGE 156
Query: 344 EGHFARECV 352
GH AREC
Sbjct: 157 SGHLARECT 165
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C +CG++GH +C + EV CY C GHL
Sbjct: 126 ---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 160
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 63/173 (36%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSG---------FQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP G FQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 357
CG+ GH + + CY CG GH A C +S+V
Sbjct: 114 SCGEFGHI-----------------QKDCTKVKCYRCGETGHVAINCSKTSEV 149
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 73/170 (42%), Gaps = 50/170 (29%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY CGE GH+A +C ++ K C+ CG +GGH AKDC +
Sbjct: 48 CYRCGESGHLAKDCD--LQEDKACYNCG-------------------RGGHIAKDCKEPK 86
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
+ + Q C CG GH C D E +CY C FGH+ D +V
Sbjct: 87 R---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI----QKDCT--KVK 131
Query: 303 CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECV 352
C+RCG+ GH ++ + + S +CY CG GH AREC
Sbjct: 132 CYRCGETGHVAINCS--------------KTSEVNCYRCGESGHLARECT 167
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKD 237
+ CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KD
Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKD 126
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
C C +CG++GH +C + EV CY C GHL
Sbjct: 127 C---------TKVKCYRCGETGHVAINCSKT------SEVNCYRCGESGHL 162
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 75/184 (40%), Gaps = 59/184 (32%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFA 348
D +V C+RCG+ GH ++ + + S +CY CG GH A
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCS--------------KTSEVNCYRCGESGHLA 168
Query: 349 RECV 352
REC
Sbjct: 169 RECT 172
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 70/180 (38%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 357
C+ CG+ GH + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHI-----------------QKDCTKVKCYRCGETGHVAINCSKTSEV 156
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 75/184 (40%), Gaps = 59/184 (32%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFA 348
D +V C+RCG+ GH ++ + + S +CY CG GH A
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCS--------------KTSEVNCYRCGESGHLA 168
Query: 349 RECV 352
REC
Sbjct: 169 RECT 172
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 70/180 (38%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 357
C+ CG+ GH + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHI-----------------QKDCTKVKCYRCGETGHVAINCSKTSEV 156
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 75/184 (40%), Gaps = 59/184 (32%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFA 348
D +V C+RCG+ GH ++ + + S +CY CG GH A
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCS--------------KTSEVNCYRCGESGHLA 168
Query: 349 RECV 352
REC
Sbjct: 169 RECT 172
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 70/180 (38%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 357
C+ CG+ GH + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHI-----------------QKDCTKVKCYRCGETGHVAINCSKTSEV 156
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCP 239
CYNCGE GH A C + C+ C H +C++ Q C+ C GH +DCP
Sbjct: 19 CYNCGENGHQAREC----TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK------EVQCYICRCFGHLCCVNI 293
+ Q A+ C KCG GH CR + + + CY C +GH
Sbjct: 75 SS-PNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QA 128
Query: 294 SDAVPGEVSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVS 353
D G V C+ CG++GH C QA S G+ CY C GH A C S
Sbjct: 129 RDCTMG-VKCYSCGKIGHRSF---ECQQA---SDGQL-------CYKCNQPGHIAVNCTS 174
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
P R CY CG GH+A +CR+ + C+ CGS H R C+
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV 135
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GHR+ +C + Q+C KC GH +C
Sbjct: 136 KCYSCGKIGHRSFECQQA-----SDGQLCYKCNQPGHIAVNC 172
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 45/158 (28%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ CG H R+C+K C+ C + GH+A +C + Q + C CG +GH + C
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEP-----QQEKTCYACGTAGHLVRDC 73
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLHWNSCMQACAR 325
+S + E C++CG++GH R
Sbjct: 74 PSSPNPRQGAE--------------------------CYKCGRVGHIARD--------CR 99
Query: 326 SRGETVEA------SPSSCYNCGAEGHFARECVSSSKV 357
+ G+ S +CY CG+ GH AR+C K
Sbjct: 100 TNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC--------------SKAQD 224
+TCY CG GH+ +C S+ ++ C+ CG + H R C +
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN 117
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C GH+A+DC K C CG GH F C+ + S L CY C
Sbjct: 118 CYACGSYGHQARDCTMGVK--------CYSCGKIGHRSFECQQA-SDGQL----CYKCNQ 164
Query: 285 FGHLCCVNISDAV 297
GH+ VN + V
Sbjct: 165 PGHI-AVNCTSPV 176
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 183 CYNCGEEGHMAVNC-------------RSAVKRKKPCFVCGSLEHGVRQCSKA------- 222
C+NCGE GHMA +C + C++CG + H R C ++
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 223 -----QDCFICKKGGHRAKDCPDKHKSGFQNAQV--------CLKCGDSGHDMFSCRNSY 269
+ C+ C + GH AKDC C CG GH CR +
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 270 SLDDLKEVQ-CYICRCFGHLCCVNISDAVPGEV-----SCFRCGQLGHTGLHWNSCMQAC 323
+ CY C GH+ V S +P +C+ CG GH + C
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSK-IPSGGGGGGRACYECGGTGHL-------ARDC 267
Query: 324 AR--SRGETVEASPSSCYNCGAEGHFARECVS 353
R S + C+ CG EGHFAREC S
Sbjct: 268 DRRGSGSSGGGGGSNKCFICGKEGHFARECTS 299
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H C D + ++CY C GH+ S +
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKE---DGISGLKCYTCGQAGHM-----SRDCQNDR 135
Query: 302 SCFRCGQLGH 311
C+ C + GH
Sbjct: 136 LCYNCNETGH 145
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 38/158 (24%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
+K C+VCG + H C + C+ C K GH DC F+ C CG++GH
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQ---CYNCGETGHVR 59
Query: 263 FSCRNSYSLDDLKEVQ-CYICRCFGHLCCVNISDAVP--------GEVSCFRCGQLGHTG 313
C VQ C+ C GH IS P +VSC++CG H
Sbjct: 60 SEC----------TVQRCFNCNQTGH-----ISRECPEPKKTSRFSKVSCYKCGGPNHMA 104
Query: 314 LHWNSCMQACARSRGETVEASPSSCYNCGAEGHFAREC 351
+ C + G S CY CG GH +R+C
Sbjct: 105 -------KDCMKEDG----ISGLKCYTCGQAGHMSRDC 131
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 182 TCYNCGEEGHMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
+CY CG HMA +C S +K C+ CG H R C + C+ C + GH +K
Sbjct: 93 SCYKCGGPNHMAKDCMKEDGISGLK----CYTCGQAGHMSRDCQNDRLCYNCNETGHISK 148
Query: 237 DCP 239
DCP
Sbjct: 149 DCP 151
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF--ICKKG 231
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + F I G
Sbjct: 387 NPIRKGTIKCFNCGKEGHIARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQFFRQILASG 444
Query: 232 GHRAKDC 238
GH A+
Sbjct: 445 GHEARQL 451
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 396 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDCRN 432
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR + +L
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N SC CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEH 221
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGH---LCCVNISDAV 297
K ++ +NA VC C GH + C D+ CY C H C N+ A+
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPAL 178
Query: 298 PGEVS---CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFAREC 351
GE CF CG++GH SC ++G V A SC CG+ HF ++C
Sbjct: 179 -GEFPFAKCFVCGEMGHLS---RSCPD---NTKG--VYADGGSCKLCGSVEHFKKDC 226
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H C S + + + V
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTV 238
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGH 311
+ +C++C GHL C N C CG + H
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEH 221
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H C++ V CFVCG + H R C
Sbjct: 144 PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNP 203
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
+ C +C H KDCP+ S
Sbjct: 204 KGLYADGGGCKLCGSVEHLKKDCPESQNS 232
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSS 354
GE CF CG++GH SC + + A C CG+ H ++C S
Sbjct: 179 GEFPFAKCFVCGEMGHLS---RSC-----PDNPKGLYADGGGCKLCGSVEHLKKDCPES 229
>sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag PE=3 SV=3
Length = 496
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGK 433
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>sp|Q9QC00|GAG_HV197 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag PE=3 SV=2
Length = 495
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--MQRGNFRNQRKNVKCFNCGKEGHIARNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKEC 426
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 435
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 37/133 (27%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
TCY CGE G A NC + G++ C+ C + GH AKDC D
Sbjct: 46 TCYCCGESGRNAKNC----------VLLGNI------------CYNCGRSGHIAKDCKDP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ + Q C CG GH C D KE +CY C GH+ +V
Sbjct: 84 KR---ERRQHCYTCGRLGHLARDC------DRQKEQKCYSCGKLGHI------QKDCAQV 128
Query: 302 SCFRCGQLGHTGL 314
C+RCG++GH +
Sbjct: 129 KCYRCGEIGHVAI 141
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDC 238
A +C
Sbjct: 139 VAINC 143
>sp|P04594|GAG_HV1MA Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag PE=3 SV=3
Length = 505
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 442
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + ++ G + K CF C K GH A++C
Sbjct: 356 CQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 415
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 416 KKG------CWKCGKEGHQMKDC 432
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 434
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--MQRGNFRNQRKNVKCFNCGKEGHIARNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC---RNSYSLDDLKEVQ 278
K G C KCG GH M C + ++ +DL +Q
Sbjct: 408 PRKKG------CWKCGKEGHQMKECTERQANFLREDLAFLQ 442
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFF 431
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 154 TVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
T ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 371 TNSVTTAMMQRGNFKGPRKII-------KCFNCGKEGHIAKNCRAP--RKKGCWRCGKEG 421
Query: 214 HGVRQCSKAQDCFI 227
H ++ C++ Q F+
Sbjct: 422 HQLKDCTERQANFL 435
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH + C
Sbjct: 410 RKKG------CWRCGKEGHQLKDC 427
>sp|O89939|GAG_HV1SE Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag PE=3 SV=3
Length = 495
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 437
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 427
>sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag PE=1 SV=2
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag PE=1 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--IQKGNFRNQRKTVKCFNCGKEGHIAKNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKDC 426
>sp|P12494|GAG_HV1J3 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JH32) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFLGK 436
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIIKCFNCGKEGHLARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|Q9QBY4|GAG_HV196 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag PE=3 SV=2
Length = 495
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 383 KIVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|P03348|GAG_HV1BR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag PE=1 SV=3
Length = 512
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|Q9QBZ6|GAG_HV1MP Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag PE=3 SV=2
Length = 492
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|O89291|GAG_HV193 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag PE=3 SV=3
Length = 492
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 431
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 421
>sp|O93182|GAG_HV190 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 RKFVKCFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 437
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 427
>sp|Q75001|GAG_HV1ET Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag PE=3 SV=3
Length = 504
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
F P R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 380 FKGPKRAIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 431
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+A CF C K GH A++C K G C KCG GH M C
Sbjct: 385 RAIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>sp|Q70622|GAG_HV1LW Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag PE=1 SV=3
Length = 500
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 440
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + ++ G + K CF C K GH A++C
Sbjct: 356 CQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 415
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 416 KKG------CWKCGKEGHQMKDC 432
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFF 429
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 23/91 (25%)
Query: 183 CYNCGEEGH--------MAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
C G GH M+ SAV ++ F G R+ K CF C K GH
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVTNSAVMMQRGNF------KGQRRIIK---CFNCGKEGHL 396
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A++C K G C KCG GH M C
Sbjct: 397 ARNCRAPRKKG------CWKCGKEGHQMKDC 421
>sp|Q9QSR4|GAG_HV1VI Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag PE=3 SV=3
Length = 491
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 386 CFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 430
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 420
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 435
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNSVTVM--MQKGNFKNQRKTVKCFNCGKEGHIAKNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGREGHQMKDC 425
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C NC + GH+ NC + C CG ++ H + C KA C C GH CP K
Sbjct: 76 CNNCSQRGHLKRNCPHVI-----CTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHK 130
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRN---SYSLD---------DLKEVQCYICRCFGHL- 288
K F C C H C + SY L D + V CY C GH
Sbjct: 131 WKKVF-----CTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFG 185
Query: 289 --CCVNISDAVPGEVSCFRCG 307
C S VP CG
Sbjct: 186 DDCAERRSSRVPNTDGSAFCG 206
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 394 CFNCGKEGHIAKNCRAP--RKKGCWRCGREGHQMKDCTERQANFLGK 438
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 352 CQGVGGPGHKARVLAEAMSQVTNPANIM--MQRGNFRNQRKTVKCFNCGKEGHIAKNCRA 409
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH M C
Sbjct: 410 PRKKG------CWRCGREGHQMKDC 428
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWRCGKEGHQLKDCTERQANFL 435
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH + C
Sbjct: 410 RKKG------CWRCGKEGHQLKDC 427
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 29/137 (21%)
Query: 301 VSCFRCGQLGHTGLHWNSCMQACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRKR 360
V CF CG+ GH +C R +G C+ CG EGH ++C R
Sbjct: 390 VKCFNCGKEGHIA---KNC--RAPRKKG---------CWKCGKEGHQMKDCTERQANFLR 435
Query: 361 NIDASTPTFRPHRENKDHSGIKSAPHDLGKVHKRKKTQHEERGIMTSRKSKQRGGWITDD 420
D + P + + + + + S +V +R E G D
Sbjct: 436 E-DLAFPQGKARKFSSEQTRANSPIRRERQVWRRDNNSLSEAG--------------ADR 480
Query: 421 PGDISYGKPKRNHWRSP 437
G +S+ P+ W+ P
Sbjct: 481 QGTVSFSFPQITLWQRP 497
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--IQKGNFRNQRKTVKCFNCGKEGHIAKNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKDC 426
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC---RNSYSLDDLKEVQ 278
K G C KCG GH M C + ++ +DL +Q
Sbjct: 410 KKG------CWKCGKEGHQMKDCTERQANFLREDLAFLQ 442
>sp|P12498|POL_HV1J3 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate JH32) GN=gag-pol PE=3 SV=4
Length = 532
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFL 434
Score = 39.7 bits (91), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIIKCFNCGKEGHLARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYI 281
K G C KCG GH M C N + L+E ++
Sbjct: 410 KKG------CWKCGKEGHQMKDC-NERQANFLREDLAFL 441
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFL 433
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNSVTVM--MQKGNFKNQRKTVKCFNCGKEGHIAKNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGREGHQMKDC 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,738,198
Number of Sequences: 539616
Number of extensions: 9167916
Number of successful extensions: 69968
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 548
Number of HSP's that attempted gapping in prelim test: 59125
Number of HSP's gapped (non-prelim): 9406
length of query: 491
length of database: 191,569,459
effective HSP length: 122
effective length of query: 369
effective length of database: 125,736,307
effective search space: 46396697283
effective search space used: 46396697283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)