BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011183
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 97/193 (50%), Gaps = 12/193 (6%)
Query: 31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
T L A+ GH+ +V LL+ ++ N PLH+AA GH + + LL + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 150
+ + TPL AA GHT +V LL + ++ + G LH AAR+GHV+ V A
Sbjct: 74 N-AKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLA 131
Query: 151 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD---KFGNTALHVA 207
LL K+ A T KKG T LH+A K V +LLLE DA P+ K G T LHVA
Sbjct: 132 LLEKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERDAH----PNAAGKNGLTPLHVA 186
Query: 208 TRKKRTEIVTELL 220
+IV LL
Sbjct: 187 VHHNNLDIVKLLL 199
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 9/214 (4%)
Query: 29 GETALFTAADKGHIEVVNELL-KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
G T L AA +GH+E V LL K +++ +T+K GF PLH+AA G + ++LL+ D
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERD 169
Query: 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
+ G + TPL A + +V LL + GG NG LH AA+Q V+V
Sbjct: 170 -AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEV 227
Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
++LL A +G T LH+A + E+V LLL A L +K G T LH+
Sbjct: 228 ARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLV 285
Query: 208 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
++ V ++L V+A TR T L +A
Sbjct: 286 AQEGHVP-VADVLIKHGVMVDATTRMGYTPLHVA 318
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 111/240 (46%), Gaps = 22/240 (9%)
Query: 14 VAEI---RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHI 70
VAE+ R + N + G T L A ++++V LL N G+ PLHI
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHI 218
Query: 71 AAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGL 124
AA Q + + LL Q G +NA TPL AA GH +V LLSK
Sbjct: 219 AAKQNQVEVARSLL-------QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
+ +G LH A++GHV V L+ K + T + G T LH+A + ++VK
Sbjct: 272 -NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
LL+ A V K G + LH A ++ T+IVT LL + N ++ D T L IA+ L
Sbjct: 330 LLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL 387
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL A+ GH +V LL + G +S + LH AAR GH +V K LL ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
+ K QT LH A + +VKLLLE +A L G+T LH+A R+ E V L
Sbjct: 75 AKA-KDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 220 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD 273
L + + +T+ T L +A A+ G VR EL RD
Sbjct: 133 LE-KEASQACMTKKGFTPLHVA----------------AKYGKVRVAELLLERD 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T L AA +GH E+V LL L N+SG PLH+ A +GH + VL+ H
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
+ TT TPL A+ G+ +V LL + ++ G + LH AA+QGH D+V
Sbjct: 303 MVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIV 360
Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL--LEADAAIVMLPDK 198
LL K+ G T L +A + V +L + + + V++ DK
Sbjct: 361 TLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +LG + L AA +GH ++V LLK + G PL IA G+ ++
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP--NEVSSDGTTPLAIAKRLGYISVTD 394
Query: 82 VL 83
VL
Sbjct: 395 VL 396
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
++ELG+ L AA+ G+ + V +LL+ + + G PLH AA GH IV++LL
Sbjct: 1 MSELGKR-LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLL 57
Query: 85 DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
DP+ + G TPL AA GH +V LLSK G S+G+ LH+AA
Sbjct: 58 SKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAEN 113
Query: 143 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
GH ++VK LLSK DP +D G+T L +A + + E+VKLL
Sbjct: 114 GHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNEEIVKLL 155
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 159
L+ AA G+ V +LL ++G S S+G+ LH+AA GH ++VK LLSK DP
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA- 65
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
D G+T LH A + E+VKLLL + A D G T LH A EIV L
Sbjct: 66 --KDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 220 LSLPDTNVNALTRDHKTALDIA 241
LS + N D +T LD+A
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLA 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH VV +LL + G + NG+ LH AAR GH++VVK LL +
Sbjct: 4 TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
+ DK G+T LH+A + EVVKLLLEA A V DK G T LH+A R E+V L
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 220 LS 221
L
Sbjct: 121 LE 122
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 122
+G PLH+AA GH +V++LL+ ++ + TPL AA GH VV +LL + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVV-KLLLEAG 58
Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
+ NG+ LH AAR GH++VVK LL + + DK G+T LH+A + EVV
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 183 KLLLEADA 190
KLLLEA A
Sbjct: 118 KLLLEAGA 125
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T L AA GH+EVV LL+ + K+++G PLH+AA GH +V++LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
++ + TPL AA GH VV +LL + G + NG+ LH AAR GH++VV
Sbjct: 60 DVNAKD-KNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 149 KALLS 153
K LL
Sbjct: 118 KLLLE 122
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G T L AA GH+EVV LL+ + K+++G PLH+AA GH +V+
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
+LL+ ++ + TPL AA GH VV LL
Sbjct: 86 LLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLE 122
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+T LH+A + EVVKLLLEA A V DK G T LH+A R E+V LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 226 NVNALTRDHKTALDIA 241
+VNA ++ +T L +A
Sbjct: 60 DVNAKDKNGRTPLHLA 75
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
++ELG+ L AA+ G+ + V +LL+ + + G PLH+AA GH +V++LL
Sbjct: 1 MSELGKR-LIEAAENGNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLL 57
Query: 85 DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
DP+ + G TPL AA GH VV LLS+ G S+GK LH AA
Sbjct: 58 SQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAEN 113
Query: 143 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
GH +VVK LLS+ DP +D G+T L +A + + EVVKLL
Sbjct: 114 GHKEVVKLLLSQGADPNT---SDSDGRTPLDLAREHGNEEVVKLL 155
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 159
L+ AA G+ V +LL ++G + S S+GK LH AA GH +VVK LLS+ DP A
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
+ +D G+T LH+A + EVVKLLL + A D G T LH+A E+V L
Sbjct: 66 KDSD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 220 LSLPDTNVNALTRDHKTALDIA 241
LS + N D +T LD+A
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLA 143
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G+T L AA+ GH EVV LL K+ G PLH+AA GH +V+
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP--NAKDSDGKTPLHLAAENGHKEVVK 87
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
+LL DP+ + G TPL AA GH VV LLS+ G S S+G+ L A
Sbjct: 88 LLLSQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLLSQ-GADPNTSDSDGRTPLDLA 143
Query: 140 ARQGHVDVVKAL 151
G+ +VVK L
Sbjct: 144 REHGNEEVVKLL 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
++ELG+ L AA+ G+ + V +L++ + + G PLH AA +GH IV++L+
Sbjct: 1 MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLI 57
Query: 85 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
++ TPL AA GH +V L+SK G + S+G+ LH+AA++GH
Sbjct: 58 SKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGH 115
Query: 145 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
++VK L+SK + +D G+T L +A + + E+VKLL
Sbjct: 116 KEIVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G+ V +L+ ++G + S S+G+ LH+AA++GH ++VK L+SK + +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
D G+T LH A K E+VKLL+ + A V D G T LH A ++ EIV L+S
Sbjct: 67 -DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VN D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA +GH E+V L+ S + K+ G PLH AA +GH IV+
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
+L+ ++ TPL AA GH +V L+SK G + S S+G+ L A
Sbjct: 88 LLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK-GADVNTSDSDGRTPLDLARE 145
Query: 142 QGHVDVVKAL 151
G+ ++VK L
Sbjct: 146 HGNEEIVKLL 155
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
++ELG+ L AA+ G+ + V +L++ + + G PLH AA GH +V++L+
Sbjct: 1 MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLI 57
Query: 85 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
++ TPL AA GH VV L+SK G + S+G+ LH AA GH
Sbjct: 58 SKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGH 115
Query: 145 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
+VVK L+SK + +D G+T L +A + + EVVKLL
Sbjct: 116 KEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G+ V +L+ ++G + S S+G+ LH AA GH +VVK L+SK + +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
D G+T LH A + EVVKLL+ + A V D G T LH A E+V L+S
Sbjct: 67 -DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VN D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA+ GH EVV L+ S + K+ G PLH AA GH +V+
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
+L+ ++ TPL AA GH VV L+SK G + S S+G+ L A
Sbjct: 88 LLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLARE 145
Query: 142 QGHVDVVKAL 151
G+ +VVK L
Sbjct: 146 HGNEEVVKLL 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
++ +E T L AA+ H+E V KY K G + K+ G LH+AA +GH+ +
Sbjct: 37 IDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 80 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-ALHF 138
VQ LL + TP++ A H +V LLSK G + I R N +N LH+
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINI-RDNEENICLHW 150
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AA G VD+ + LL+ L + G + LH+A + + V L L D+ V L +K
Sbjct: 151 AAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNK 208
Query: 199 FGNTALHVAT 208
G T L A+
Sbjct: 209 EGETPLQCAS 218
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
PLH AA GH I +L+ ++ T TPL+ AA H V L+ K G L++
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+ G LH AA++GH +VV+ LLS D G T + A + + ++VKLLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 187 E------------------------ADAAIVMLPDK--------FGNTALHVATRKKRTE 214
D A ++L K G++ LH+A R+ R +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
V LS D++V ++ +T L A
Sbjct: 192 CVVLFLS-RDSDVTLKNKEGETPLQCA 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
++ N ++ LH AA GHVD+ L+ + ++ + +T L A + E VK
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKY 62
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
L++A A+V D G+T LH+A +K E+V LLS +VN
Sbjct: 63 LIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
++V+ + G T L AA KGH EVV LL + + + ++ G+ P+ A H +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-NGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 80 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
V++LL ++ N L AA G + LL+ L ++ +G + LH A
Sbjct: 127 VKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVN-IHGDSPLHIA 184
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
AR+ D V LS+D + + +K+G+T L A
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCA 217
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
NG+ LH AAR GH++VVK LL + + DK G+T LH+A + EVVKLLLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELL 220
A V DK G T LH+A R E+V LL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH VV +LL + G + NG+ LH AAR GH++VVK LL +
Sbjct: 4 TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
+ DK G+T LH+A + EVVKLLLEA A
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 122
+G PLH+AA GH +V++LL+ ++ + TPL AA GH VV +LL + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVV-KLLLEAG 58
Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALL 152
+ NG+ LH AAR GH++VVK LL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T L AA GH+EVV LL+ + K+++G PLH+AA GH +V++LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELL 118
++ + TPL AA GH VV LL
Sbjct: 60 DVNAKD-KNGRTPLHLAARNGHLEVVKLLL 88
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G T L AA GH+EVV LL+ + K+++G PLH+AA GH +V+
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 82 VLLD 85
+LL+
Sbjct: 86 LLLE 89
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G T L AA +GH+E+V LLK + K++ G+ PLH+AA +GH IV+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL ++ TPL AA GH +V E+L K G + GK A R
Sbjct: 86 VLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDLAIR 143
Query: 142 QGHVDVVKAL 151
+GH D+ + L
Sbjct: 144 EGHEDIAEVL 153
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH +V E+L K G + +G LH AAR+GH+++V+ LL +
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
+ DK G T LH+A + E+V++LL+A A V DKFG T +A R+ +I
Sbjct: 96 AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDI 149
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
K G + +G LH AAR+GH+++V+ LL + DK G+T +A++
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGHE 147
Query: 180 EVVKLLLEA 188
++ ++L +A
Sbjct: 148 DIAEVLQKA 156
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + + DK G T LH+A + E+V++LL+A A V DK
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A R+ EIV E+L +VNA +D T L +A + E EI + L
Sbjct: 67 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 259 RCGA 262
+ GA
Sbjct: 122 KAGA 125
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V DK G T LH+A R+ EIV E+L
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
+VNA +D T L +A + E EI + L + GA
Sbjct: 60 DVNAKDKDGYTPLHLA----AREGHLEIVEVLLKAGA 92
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 88
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
K G + +G LH AAR+GH+++V+ LL + DK G+T +A+ +
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNE 147
Query: 180 EVVKLLLEA 188
++ ++L +A
Sbjct: 148 DIAEVLQKA 156
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH +V E+L K G + +G LH AAR+GH+++V+ LL +
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
+ DK G T LH+A + E+V++LL+A A V DKFG T +A +I
Sbjct: 96 AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDI 149
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + + DK G T LH+A + E+V++LL+A A V DK
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A R+ EIV E+L +VNA +D T L +A + E EI + L
Sbjct: 67 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 259 RCGA 262
+ GA
Sbjct: 122 KAGA 125
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V DK G T LH+A R+ EIV E+L
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
+VNA +D T L +A + E EI + L + GA
Sbjct: 60 DVNAKDKDGYTPLHLA----AREGHLEIVEVLLKAGA 92
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
K G + +G LH AAR+GH+++V+ LL + DK G+TA +++ +
Sbjct: 101 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
++ ++L
Sbjct: 160 DLAEIL 165
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G T L AA +GH+E+V LLK + K++ G+ PLH+AA +GH IV+
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL ++ TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + + DK G T LH+A + E+V++LL+A A V DK
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A R+ EIV E+L +VNA +D T L +A + E EI + L
Sbjct: 79 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KAGA----DVN-AQDKFGKTAFDISID 155
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV L+ A+ A V DK G T LH+A R+ EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 71
Query: 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
+VNA +D T L +A + E EI + L + GA
Sbjct: 72 DVNAKDKDGYTPLHLA----AREGHLEIVEVLLKAGA 104
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
++ +G+ PLH+AA GH IV+VLL + D + + G TPL AA RGH +V E+
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG---VTPLHLAARRGHLEIV-EV 98
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L K+G + S S+G LH AA++GH+++V+ LL K+ DK G+TA +++
Sbjct: 99 LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Query: 178 SCEVVKLL 185
+ ++ ++L
Sbjct: 158 NEDLAEIL 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH +V E+L K+G + S G LH AAR+GH+++V+ LL K+
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADV 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
+D G T LH+A K E+V++LL+ + A V DKFG TA ++ ++ L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 220 LSL 222
L
Sbjct: 166 QKL 168
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA GH+E+V LLK + K+ G PLH+AA +GH IV+
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--VNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
VLL + D + S + G TPL AA RGH +V E+L K+G + GK A +
Sbjct: 98 VLLKNGADVNASDSHG---FTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKAL 151
G+ D+ + L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + R D G T LH+A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A R+ EIV E+L +VNA T L +A + EI + L
Sbjct: 79 LGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLA----AKRGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KNGA----DVN-AQDKFGKTAFDISID 155
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 115
G+ ++ G PLH+AA+ G ++ +LL H G NA V
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVP----------- 122
Query: 116 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
LH A +QGH VVK LL + + + D G T L A
Sbjct: 123 --------------------LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACS 161
Query: 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 235
G E+V LLL+ A+I +K GNTALH A +K V ELL L +V L + +
Sbjct: 162 GGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHV-FVVELLLLHGASVQVLNKRQR 219
Query: 236 TALDIAE 242
TA+D AE
Sbjct: 220 TAVDCAE 226
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
L A +GH +VV LL + K +K+ SG PL A GHH +V +LL H S++
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 93 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
+ N T L A H VV ELL G +++ + A+ A + +
Sbjct: 181 SNNKGN-TALHEAVIEKHVFVV-ELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T L A GH E+V LL++ + N G LH A ++ H +V++LL H
Sbjct: 152 GNTPLIYACSGGHHELVALLLQHGA--SINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 89 SL 90
S+
Sbjct: 210 SV 211
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
++ SG PLH+AA++GH IV+VLL H ++ + TPL AA GH +V E+L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
K+G + + + G LH AA GH+++V+ LL + DK G+TA +++ +
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
++ ++L
Sbjct: 160 DLAEIL 165
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G+T L AA KGH+E+V LLK+ + ++ G PLH+AA+ GH IV+
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD--VNAADKMGDTPLHLAALYGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL + ++ T TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKNGADVNATD-TYGFTPLHLAADAGHLEIV-EVLLKYGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + +GK LH AA +GH+++V+ LL
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ DK G T LH+A E+V++LL+ + A V D +G T LH+A E
Sbjct: 70 GADV-NAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ G+ PLH+AA GH IV+VLL + D + S TG TPL AA GH +V E+L
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
K G + ++G LH AA+ GH+++V+ LL + + DK G+TA +++ +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
++ ++L
Sbjct: 159 EDLAEIL 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA+ GH +V E+L K+G + S G LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
D G T LH+A K E+V++LL+ A V DKFG TA ++ ++
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA GH+E+V LLK + + +G PLH+AA GH IV+
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD--VNASDLTGITPLHLAAATGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL H ++ + TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKHGADVNAYDNDGH-TPLHLAAKYGHLEIV-EVLLKHGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V +L +G + + ++G LH AA GH+++V+ LL K+
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
+D G T LH+A E+V++LL+ A V D G+T LH+A + EIV E+L
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKH-GADVNAYDNDGHTPLHLAAKYGHLEIV-EVLL 133
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + TD G T LH+A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDL 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A EIV E+L +VNA D T L +A + EI + L
Sbjct: 79 TGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLA----AKYGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KHGA----DVN-AQDKFGKTAFDISID 155
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 68 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
LH AA+ +V+ + + Q G N+TPL A +GH ++V +L+ K G +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLL 186
G + +H AA+ GH +V L++K Q D+ G T L A + S + +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 187 EADAAIVMLPDKF-GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242
+ + V L DK+ NTALH A T +++ LL NV+A ++ALD+A+
Sbjct: 164 TFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAK 218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 18 RSSVVNEVN-ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 76
+ ++V+++ +L T L A +GH+ +V +L+KY L + G +H+AA GH
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGH 121
Query: 77 HAIVQVLL--DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 134
+IV L+ D + G TPL+ AA R H+ LL + + KN
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNG---MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 135 -ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
ALH+A G+ V+ LL + + + KG++AL +A + ++ ++ L EA A
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL--SKD 155
N T L AA +V +SK + ++ LH+A RQGH+ +V L+ D
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 156 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
P L D +G + +H+A + +V L+ + M+ D+ G T L A + +
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVD 157
Query: 216 VTELLSLPDTNVNALTRDHK-TALDIA 241
T LL + +VN + HK TAL A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWA 184
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
R+ DK+ T LH A ++VK + A + L +T LH ATR+ +V +L
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Query: 220 L 220
+
Sbjct: 96 M 96
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 64 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
G+ PLH+AA GH IV+VLL + D + T G +TPL AA GH +V E+L K+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIV-EVLLKN 102
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
G + NG LH AA +GH+++V+ LL + DK G+TA +++ + ++
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDL 161
Query: 182 VKLL 185
++L
Sbjct: 162 AEIL 165
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + +G T L AA GH+E+V LLK + + G PLH+AA GH IV+
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD--VNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL + ++ + TPL AA RGH +V E+L K G + GK A +
Sbjct: 98 VLLKNGADVNAKD-DNGITPLHLAANRGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIN 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G LH AA GH+++V+ LL K+ D G T LH+A E+V++LL+ + A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGA 104
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
V D G T LH+A + EIV LL +VNA + KTA DI+
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ +G PLH+AA GH IV+VLL H D S G TPL AA GH +V E+L
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG---YTPLHLAAYWGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
K+G + S+G LH AA+ G++++V+ LL + + DK G+TA +++ +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
++ ++L
Sbjct: 159 EDLAEIL 165
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156
+ TPL AA GH +V E+L K G ++ S G LH AA GH+++V+ LL K+
Sbjct: 46 TGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL-KNG 103
Query: 157 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
D G T LH+A K E+V++LL+ A V DKFG TA ++ ++
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 217 TELLSL 222
L L
Sbjct: 163 EILQKL 168
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V +L +G + + + G LH AA GH+++V+ LL +
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
+D G T LH+A E+V++LL+ + A V D G T LH+A + EIV E+L
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLL 133
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 64 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
G+ PLH+AA GH IV+VLL + D + + G TPL AA RGH VV E+L K+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG---VTPLHLAADRGHLEVV-EVLLKN 102
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
G + + NG LH AA GH+++V+ LL + DK G+TA +++ + ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Query: 182 VKLL 185
++L
Sbjct: 162 AEIL 165
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + LG T L AAD+GH+EVV LLK + + +GF PLH+AA GH IV+
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD--VNANDHNGFTPLHLAANIGHLEIVE 130
Query: 82 VLLDH 86
VLL H
Sbjct: 131 VLLKH 135
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + +G T L AA GH+E+V LLK + + G PLH+AA +GH +V+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD--VNADDSLGVTPLHLAADRGHLEVVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL + ++ + TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKNGADVNAND-HNGFTPLHLAANIGHLEIV-EVLLKHGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + S G LH AA GH+++V+ LL K
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G T LH+A EVV++LL+ + A V D G T LH+A E
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLK-HGADVNAQDKFGKTAFDIS 153
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V+ G T L AA GH+E+V LLK+ + + GF PLH+AA+ GH IV+
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD--VDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
VLL + D + TG +TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKYGADVNAFDMTG---STPLHLAADEGHLEIV-EVLLKYGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKA 150
G+ D+ K+
Sbjct: 154 IDNGNEDLAKS 164
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
+ +G PLH+AAV GH IV+VLL H + TPL AA GH +V E+L K
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
G + G LH AA +GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVK 183
+ K
Sbjct: 161 LAK 163
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + D G T LH+A E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADV 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
+G T LH+A EIV LL +VNA T L +A + E EI + L
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLA----ADEGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L + GH+E++ LLKY+ + ++SG+ PLH+AA +GH IV+
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL + ++ TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL GH ++ E+L K + S +G LH AA +GH+++V+ LL +
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
D +G T LH+A + E+V++LL+ A V DKFG TA ++ ++ L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 220 LSL 222
L
Sbjct: 166 QKL 168
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + D G T LH+ V E++++LL+ AA V DK
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
G T LH+A + EIV LL +VNA+ T L +A + + EI + L
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA----AEDGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV L+ A+ A V D FG T LH+ EI+ LL
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-A 71
Query: 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
+VNA + T L +A + EI + L + GA
Sbjct: 72 DVNASDKSGWTPLHLA----AYRGHLEIVEVLLKYGA 104
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
++ SG+ PLH+AA GH IV+VLL + ++ + TPL AA GH +V E+L
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
K+G + + G LH AA GH+++V+ LL K+ DK G+TA +++ +
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
++ ++L
Sbjct: 160 DLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156
S TPL AA GH +V E+L K+G + G L AA GH+++V+ LL K+
Sbjct: 46 SGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNG 103
Query: 157 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
D +G T LH+A E+V++LL+ + A V DKFG TA ++ ++
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 217 TELLSL 222
L L
Sbjct: 163 EILQKL 168
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA GH+E+V LLK + + +G PL +AA+ GH IV+
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL + ++ + TPL AA GH +V E+L K+G + GK A +
Sbjct: 98 VLLKNGADVNANDMEGH-TPLHLAAMFGHLEIV-EVLLKNGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + ++G LH AA GH+++V+ LL K
Sbjct: 11 GSDLGKKLLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G T L +A E+V++LL+ + A V D G+T LH+A E
Sbjct: 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLK-NGADVNAQDKFGKTAFDIS 153
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
+G + + + + VN + LG T L AA GH+E+V LLKY + + G
Sbjct: 24 AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDNYGA 81
Query: 66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
PLH+AA GH IV+VLL H ++ TPL AA GH +V E+L K G +
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIV-EVLLKYGADV 139
Query: 126 EISRSNGKNALHFAARQGHVDVVKAL 151
GK A + G+ D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123
G PLH+AA GH IV+VLL + ++ ATPL AA GH +V E+L K G
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLHLAADNGHLEIV-EVLLKHGA 104
Query: 124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 183
+ G LH AA GH+++V+ LL + DK G+TA +++ + ++ +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 184 LL 185
+L
Sbjct: 164 IL 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + TD G T LH+A K E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
+G T LH+A EIV E+L +VNA + T L +A + + EI + L
Sbjct: 79 YGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLA----AYDGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
+ GA ++N +D+ KT I D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
+G LH AA+ GH + VK LLSK + R+ K G T LH+A K E+VKLLL A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
A V K GNT H+A + EIV +LL +VNA
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNA 103
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL +AA GH V +LLSK G + +G LH AA+ GH ++VK LL+K +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
R+ K G T H+A K E+VKLL
Sbjct: 70 ARS-KDGNTPEHLAKKNGHHEIVKLL 94
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 62 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
+ G PLH AA GH V+ LL ++ + N TPL AA GH +V LL+K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAK- 64
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 162
G + +G H A + GH ++VK L +K + R+
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T L AA GH E V +LL S + +++ G PLH+AA GH IV++LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
++ + N TP A GH +V L +K
Sbjct: 67 DVNARSKDGN-TPEHLAKKNGHHEIVKLLDAK 97
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 164 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 223
K G T LH A K E VK LL + A V K GNT LH+A + EIV LL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 224 DTNVNALTRDHKTALDIAE 242
+VNA ++D T +A+
Sbjct: 65 GADVNARSKDGNTPEHLAK 83
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
+ + VN ++ G T L AA GH E+V LL + +++ G P H+A GHH
Sbjct: 31 KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--VNARSKDGNTPEHLAKKNGHH 88
Query: 78 AIVQVL 83
IV++L
Sbjct: 89 EIVKLL 94
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 194 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
M K GNT LH A + E V +LLS +VNA ++D T L +A
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLA 49
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 1 MVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLKYSTK 54
MV NL+ + ++ E++ S++ + ++ TAL A GH E+V LL+
Sbjct: 10 MVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 66
Query: 55 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ K+ +G+ PLHIAA G IV+ LL ++ + TPL AA++ +
Sbjct: 67 --VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIA 123
Query: 115 NELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
LL +GG ++ + + A+H AA +G++ ++ LL D +G T LH+A
Sbjct: 124 VMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLA 180
Query: 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
+ E KLL+ A+I + +K T L VA
Sbjct: 181 CDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 213
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 93
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L K G + NG LH+AA + ++ LL + D TA+H A
Sbjct: 94 LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 151
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
+ +++ +LL A+ + D GNT LH+A ++R E L+S ++ ++ KT
Sbjct: 152 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 209
Query: 238 LDIAEG 243
L +A+G
Sbjct: 210 LQVAKG 215
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
A G ++ +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 73
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G + LH+A R EIV LL VNA+ ++ T L A
Sbjct: 74 GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 114
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 165
A G + E + D L + + + ALH+A GH ++V+ LL + + D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDA 73
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G + LH+A E+VK LL A V ++ G T LH A K R EI LL +
Sbjct: 74 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL---EG 129
Query: 226 NVNALTRDHKTA 237
N +DH A
Sbjct: 130 GANPDAKDHYEA 141
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 1 MVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLKYSTK 54
MV NL+ + ++ E++ S++ + ++ TAL A GH E+V LL+
Sbjct: 9 MVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 55 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ K+ +G+ PLHIAA G IV+ LL ++ + TPL AA++ +
Sbjct: 66 --VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIA 122
Query: 115 NELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
LL +GG ++ + + A+H AA +G++ ++ LL D +G T LH+A
Sbjct: 123 VMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLA 179
Query: 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
+ E KLL+ A+I + +K T L VA
Sbjct: 180 CDEERVEEAKLLVSQGASIY-IENKEEKTPLQVA 212
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L K G + NG LH+AA + ++ LL + D TA+H A
Sbjct: 93 LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
+ +++ +LL A+ + D GNT LH+A ++R E L+S ++ ++ KT
Sbjct: 151 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 208
Query: 238 LDIAEG 243
L +A+G
Sbjct: 209 LQVAKG 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
A G ++ +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G + LH+A R EIV LL VNA+ ++ T L A
Sbjct: 73 GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 113
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 165
A G + E + D L + + + ALH+A GH ++V+ LL + + D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDA 72
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G + LH+A E+VK LL A V ++ G T LH A K R EI LL +
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL---EG 128
Query: 226 NVNALTRDHKTA 237
N +DH A
Sbjct: 129 GANPDAKDHYEA 140
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
+ SG PLH+AA GH IV+VLL H ++ +TPL AA GH +V E+L K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
G + + G LH AA GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVKLL 185
+ ++L
Sbjct: 161 LAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA GH+E+V LLK+ + + G PLH+AA+ GH IV+
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD--VNAIDIXGSTPLHLAALIGHLEIVE 97
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
VLL H D + T G TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKHGADVNAVDTWGD---TPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKAL 151
G+ D+ + L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
T S TPL AAT GH +V E+L K G + G LH AA GH+++V+ L
Sbjct: 41 NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
L + D G T LH+A E+V++LL+ A V DKFG TA ++
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 212 RTEI 215
++
Sbjct: 158 NEDL 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + + ++G LH AA GH+++V+ LL
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G T LH+A E+V++LL+ A + + D +G+T LH+A E
Sbjct: 70 GADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLK-HGADVNAQDKFGKTAFDIS 153
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
+ SG PLH+AA GH IV+VLL H ++ +TPL AA GH +V E+L K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
G + + G LH AA GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVKLL 185
+ ++L
Sbjct: 161 LAEIL 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AA GH+E+V LLK+ + + G PLH+AA+ GH IV+
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD--VNAIDIMGSTPLHLAALIGHLEIVE 97
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
VLL H D + T G TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKHGADVNAVDTWGD---TPLHLAAIMGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKAL 151
G+ D+ + L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
T S TPL AAT GH +V E+L K G + G LH AA GH+++V+ L
Sbjct: 41 NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
L + D G T LH+A E+V++LL+ A V DKFG TA ++
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 212 RTEI 215
++
Sbjct: 158 NEDL 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + + ++G LH AA GH+++V+ LL
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G T LH+A E+V++LL+ A + + D +G+T LH+A E
Sbjct: 70 GADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLK-HGADVNAQDKFGKTAFDIS 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + + G LH AAR GH+++V+ LL K
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G T LH+A K E+V++LL+ A V D G+T LH+A E
Sbjct: 69 NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
IV LL +VNA + KTA DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 8/132 (6%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G+T L AA GH+E+V LLK + + SG PLH+AA +GH IV+
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD--VNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 82 VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
VLL + D + T G +TPL AA GH +V E+L K G + GK A +
Sbjct: 98 VLLKYGADVNADDTIG---STPLHLAADTGHLEIV-EVLLKYGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKAL 151
G+ D+ + L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
AEG
Sbjct: 183 AEG 185
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ SG+ P HIA G+ +V+ L D P L++ T + + A V++ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQFL 126
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
++G + I + LH AA G + +++ L DK+G T L A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
+ LL+E A L D G A VA ++
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 1/149 (0%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T A G++EVV L K L + G LH+A + + Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
S+ + N PL AA+ G ++ L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L+ K D KG A +A+ Q
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
+G + + + + VN ++ G T L AA GH E+V LLK+ + ++ G+
Sbjct: 24 AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTDGW 81
Query: 66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
PLH+AA GH IV+VLL + ++ TPL AA RGH +V E+L K G +
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLEIV-EVLLKHGADV 139
Query: 126 EISRSNGKNALHFAARQGHVDVVKAL 151
GK A + G+ D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ G PLH+AA GH IV+VLL H D + T G TPL AA GH +V E+L
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG---WTPLHLAADNGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
K G + + G LH AA +GH+++V+ LL + DK G+TA +++ +
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
++ ++L
Sbjct: 159 EDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V +L +G + G LH AA GH ++V+ LL + R
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
D G T LH+A E+V++LL+ A V D +G T LH+A + EIV E+L
Sbjct: 77 -DTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
AEG
Sbjct: 183 AEG 185
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 1/149 (0%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T A G++EVV L K L + G LH+A + + Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
S+ + N PL AA+ G ++ L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L+ K D KG A +A+ Q
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ SG+ P HIA G+ +V+ L D P L++ T + + A V++ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQFL 126
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
++G + I + LH AA G + +++ L DK+G T L A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
+ LL+E A L D G A VA ++
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
AEG
Sbjct: 183 AEG 185
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 1/149 (0%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
G T A G++EVV L K L + G LH+A + + Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
S+ + N PL AA+ G ++ L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L+ K D KG A +A+ Q
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
+ SG+ P HIA G+ +V+ L D P L++ T + + A V++ L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQFL 126
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
++G + I + LH AA G + +++ L DK+G T L A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
+ LL+E A L D G A VA ++
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N GET L A+ KG I V LL+ + + K+ +G+ PLH A GH +V++LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
H +L TTG N +PL AA GH +V LLS
Sbjct: 65 HK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
N G LHIA+++G V+ LL + DP++ G TPL A GH VV ELL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVV-ELL 62
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 153
+ L+ + + LH AA+ GHVD+VK LLS
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCE 180
G+ + G+ LH A+ +G + V+ LL DP + D G T LH A +
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLK 57
Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
VV+LLL+ A+V ++ LH A + +IV LLS
Sbjct: 58 VVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 164
A+ +G V E L ++G + G LH A GH+ VV+ LL L T
Sbjct: 17 ASIKGDIPSV-EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGY 74
Query: 165 KGQTALHMAVKGQSCEVVKLLLEADAA 191
+ + LH A K ++VKLLL A+
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD---PLHIAAVQGHHAIVQVLLD 85
G T L A + GH++VV LL++ N +G+ PLH AA GH IV++LL
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKA-----LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Query: 86 H 86
+
Sbjct: 98 Y 98
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 91
AL AA++ + V E+L+ +T + + + G PL+IA I + L+D ++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
S+ +P + A +G T ++ +L L G NAL AA +GH+D VK L
Sbjct: 67 LQNSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 152 LSKDPQLARRTDKKGQTALHMAV---KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHV 206
L + + G TAL AV +G ++VKLL+E + A + D G TA+
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDY 184
Query: 207 ATRKKRTEI 215
A +K TEI
Sbjct: 185 ANQKGYTEI 193
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAV------QG 75
+N+ N G AL AA+KGHI+ V LL+ +E + +N G+ L I AV Q
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLE-DGREDIDFQNDFGYTAL-IEAVGLREGNQL 156
Query: 76 HHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAV 113
+ IV++L+++ D S+ +G T + A +G+T +
Sbjct: 157 YQDIVKLLMENGADQSIKDNSG---RTAMDYANQKGYTEI 193
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 10 FDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH 69
F A + VVN + G TAL + + VV +LL + + ++NR+G+ P+
Sbjct: 92 FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-VDKQNRAGYSPIM 150
Query: 70 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
+ T L + T+ V +L + G + +
Sbjct: 151 L-----------------------------TALATLKTQDDIETVLQLF-RLGNINAKAS 180
Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
G+ AL A G VDVVKALL+ + + + D G TAL A + E+ LLL
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
+ + L D+ G+TAL VA ++EI + L S
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 83 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAA 140
LLD+ +++ + G T L + + + VV +LL D G+ ++ + N G + + A
Sbjct: 99 LLDYVVNIADSNGN---TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTA 153
Query: 141 -----RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
Q ++ V L + + + + GQTAL +AV +VVK LL +A V +
Sbjct: 154 LATLKTQDDIETVLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNV 211
Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251
D G+TAL A EI LL++P +++ RD TAL +A SE AS
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
S+ ++ TAL A GH E+V LL+ + K+ +G+ PLHIAA G I
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEI 88
Query: 80 VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 135
V+ LL H +++Q + TPL AA++ + LL +GG ++ + A
Sbjct: 89 VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AA +G++ +V LL D +G T LH+A + E K L+ A+I +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 196 PDKFGNTALHVA 207
+K T L VA
Sbjct: 201 ENKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L K G + NG LH+AA + ++ LL + D TA+H A
Sbjct: 93 LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALTRD 233
+ ++V +LL A+ + D GNT LH+A ++R E +VT+ S+ N ++
Sbjct: 151 NLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-----KE 204
Query: 234 HKTALDIAEG--------LPSSEEAS 251
KT L +A+G L EEAS
Sbjct: 205 EKTPLQVAKGGLGLILKRLAEGEEAS 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
A G +D +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G + LH+A R EIV LL + +VNA+ ++ T L A
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
+ + A G + E + D L + + + ALH+A GH ++V+ LL + +
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
D G + LH+A E+VK LL A V ++ G T LH A K R EI LL
Sbjct: 70 -DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL- 126
Query: 222 LPDTNVNALTRDHKTA 237
+ N +DH A
Sbjct: 127 --EGGANPDAKDHYDA 140
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
S+ ++ TAL A GH E+V LL+ + K+ +G+ PLHIAA G I
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEI 88
Query: 80 VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 135
V+ LL H +++Q + TPL AA++ + LL +GG ++ + A
Sbjct: 89 VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AA +G++ +V LL D +G T LH+A + E K L+ A+I +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 196 PDKFGNTALHVA 207
+K T L VA
Sbjct: 201 ENKEEKTPLQVA 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
L K G + NG LH+AA + ++ LL + D TA+H A
Sbjct: 93 LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALTRD 233
+ ++V +LL A+ + D GNT LH+A ++R E +VT+ S+ N ++
Sbjct: 151 NLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-----KE 204
Query: 234 HKTALDIAEG--------LPSSEEAS 251
KT L +A+G L EEAS
Sbjct: 205 EKTPLQVAKGGLGLILKRLAEGEEAS 230
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
A G +D +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G + LH+A EIV LL + +VNA+ ++ T L A
Sbjct: 73 GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
+ + A G + E + D L + + + ALH+A GH ++V+ LL + +
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
D G + LH+A E+VK LL A V ++ G T LH A K R EI LL
Sbjct: 70 -DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL- 126
Query: 222 LPDTNVNALTRDHKTA 237
+ N +DH A
Sbjct: 127 --EGGANPDAKDHYDA 140
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH +V E+L ++G + +NG LH AA GH+++V+ LL +
Sbjct: 37 TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
+ D G T L++A E+V++LL+ A V DKFG TA ++
Sbjct: 96 AK-DATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
N + G T L AA GH+E+V LL+ + + +G PLH+AA GH IV+V
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD--VNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 83 LLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140
LL + D + TG TPL AA GH +V E+L K G + GK A +
Sbjct: 87 LLKYGADVNAKDATG---ITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTAFDISI 142
Query: 141 RQGHVDVVKAL 151
G+ D+ + L
Sbjct: 143 DIGNEDLAEIL 153
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V+ G T L AA GH+E+V LLKY + K+ +G PL++AA GH IV+
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD--VNAKDATGITPLYLAAYWGHLEIVE 118
Query: 82 VLLDH 86
VLL H
Sbjct: 119 VLLKH 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G+ LH AA GH+++V+ LL + D G T LH+A E+V++LL+ A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKY-GA 92
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251
V D G T L++A EIV E+L +VNA + KTA DI+ + +E+ +
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDI-GNEDLA 150
Query: 252 EI 253
EI
Sbjct: 151 EI 152
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N+LG+TAL AA G V +L Y+ G+ R G LH+A H VLL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 86 HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 133
PS L+Q+ + T AA NE +D LE +G
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
LH A ++V+ L L + G+T LH+AV+ Q+ V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 131 NGKNALHFAARQGHVDVVKALL--SKDPQLARRTDKKGQTALHMA-VKGQSCEVVKLLLE 187
+G ALH A H + LL S + + GQTALH+A + G++ V KL
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-- 65
Query: 188 ADAAIVMLPDKFGNTALHVATR 209
A A V++ ++ G+TALH+A R
Sbjct: 66 AAGAGVLVAERGGHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N+LG+TAL AA G V +L Y+ G+ R G LH+A H VLL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 86 HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 133
PS L+Q+ + T AA NE +D LE +G
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
LH A ++V+ L L + G+T LH+AV+ Q+ V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 131 NGKNALHFAARQGHVDVVKALL--SKDPQLARRTDKKGQTALHMA-VKGQSCEVVKLLLE 187
+G ALH A H + LL S + + GQTALH+A + G++ V KL
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-- 65
Query: 188 ADAAIVMLPDKFGNTALHVATR 209
A A V++ ++ G+TALH+A R
Sbjct: 66 AAGAGVLVAERGGHTALHLACR 87
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++E G T L AA GH+E+V LLKY + ++ G PLH+AA++GH IV+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 82 VLLDH 86
VLL H
Sbjct: 98 VLLKH 102
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + D+ G T LH+A + E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
FG T LH+A + EIV LL +VNA + KTA DI+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA GH +V E+L K G + + G LH AA +GH+++V+ LL +
Sbjct: 49 TPLHLAAQLGHLEIV-EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 71 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
AA G V++L+ + ++ T + TPL AA G +V E+L K+G + S S
Sbjct: 13 AAAAGQDDEVRILMANGADVNATD-DNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
G LH AA GH+++V+ LL + D+ G T LH+A E+V++LL+
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 191 AIVMLPDKFGNTALHVATRKKRTEI 215
A V D G TA ++ + + ++
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDL 153
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ G T L AA G +E+V LLK + + +G PLH+AA GH IV+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD--VNASDSAGITPLHLAAYDGHLEIVE 89
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
VLL H ++ + TPL AA G +V E+L K G + + G A +
Sbjct: 90 VLLKHGADVN-AYDRAGWTPLHLAALSGQLEIV-EVLLKHGADVNAQDALGLTAFDISIN 147
Query: 142 QGHVDVVKAL 151
QG D+ + L
Sbjct: 148 QGQEDLAEIL 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V +L +G + + NG LH AA G +++V+ LL K+
Sbjct: 10 LLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNA 67
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
+D G T LH+A E+V++LL+ A V D+ G T LH+A + EIV LL
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 222 LPDTNVNALTRDHKTALDIA 241
+VNA TA DI+
Sbjct: 127 -HGADVNAQDALGLTAFDIS 145
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 4 NLSGAEFDTEVAEI---RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
+L+ A E+ E+ + VN + G T L AA GH+E+V LLK+ +
Sbjct: 44 HLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD--VNAY 101
Query: 61 NRSGFDPLHIAAVQGHHAIVQVLLDH 86
+R+G+ PLH+AA+ G IV+VLL H
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKH 127
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 90
L A +++V +LL+ ++ G+ PLH A IV++LL H DP L
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 128
+ G ATP + AA G ++ LSK + E
Sbjct: 88 RKKNG---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 129 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
R G AL AA +GHV+V+K LL + D G+
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 169 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
AL A+ E + LL A V + + G T L +A KK +V LL
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264
Query: 226 NVNALTRDHKTALDIA 241
+N D KTAL +A
Sbjct: 265 EINDTDSDGKTALLLA 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNEL--------LKYSTKEGLTRKNRSGFDPLH 69
+ + VNE + G TA AA G ++ + L L+ TKE R + G L
Sbjct: 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173
Query: 70 IAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
AA +GH ++++LLD D + G + + ++ + LL G +
Sbjct: 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 233
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+ GK L A + H+ +V+ LL ++ TD G+TAL +AV+ + ++ +LL
Sbjct: 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 187 EADAA 191
+ A+
Sbjct: 294 KRGAS 298
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 90
L A +++V +LL+ ++ G+ PLH A IV++LL H DP L
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 128
+ G ATP + AA G ++ LSK + E
Sbjct: 68 RKKNG---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 129 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
R G AL AA +GHV+V+K LL + D G+
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 169 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
AL A+ E + LL A V + + G T L +A KK +V LL
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 226 NVNALTRDHKTALDIA 241
+N D KTAL +A
Sbjct: 245 EINDTDSDGKTALLLA 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNEL--------LKYSTKEGLTRKNRSGFDPLH 69
+ + VNE + G TA AA G ++ + L L+ TKE R + G L
Sbjct: 94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153
Query: 70 IAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
AA +GH ++++LLD D + G + + ++ + LL G +
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+ GK L A + H+ +V+ LL ++ TD G+TAL +AV+ + ++ +LL
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 187 EADAA 191
+ A+
Sbjct: 274 KRGAS 278
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 114
L +N PLH+A + I + LL DP L G TPL A +G A V
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 94
Query: 115 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 169
L +L+ + NG LH A+ G++ +V+ L+S + + G+TA
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 170 LHMAVKGQSCEVVKLLLEADAAI 192
LH+AV Q+ ++V LLL+ A +
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADV 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
TPL A + LL G E+ G LH A QG + V L P
Sbjct: 47 TPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 158 L---ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
L + T+ G T LH+A +V+LL+ A + G TALH+A + +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 247
+V+ LL +VN +T + + G PS+
Sbjct: 166 LVSLLLKC-GADVNRVTYQGYSPYQLTWGRPST 197
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 114
L +N PLH+A + I + LL DP L G TPL A +G A V
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 91
Query: 115 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 169
L +L+ + NG LH A+ G++ +V+ L+S + + G+TA
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 170 LHMAVKGQSCEVVKLLLEADAAI 192
LH+AV Q+ ++V LLL+ A +
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGADV 174
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
TPL A + LL G E+ G LH A QG + V L P
Sbjct: 44 TPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 158 L---ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
L + T+ G T LH+A +V+LL+ A + G TALH+A + +
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 247
+V+ LL +VN +T + + G PS+
Sbjct: 163 LVSLLLKC-GADVNRVTYQGYSPYQLTWGRPST 194
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 27/232 (11%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
R + +N N G TAL A ++++V L++ + + + G+ PLH AA G+
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYL 119
Query: 78 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
I + L+ + + TPL A ++ +++ G +E +R + +
Sbjct: 120 DIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 138 FAARQ----GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
ARQ GH++ V R K G TALH+A EV+KLL++A V
Sbjct: 179 RDARQWLNSGHINDV------------RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDV 225
Query: 194 MLPDKFGNTALHVATRKKRTE---IVTELLSLPDTNVNALTRDHKTALDIAE 242
+ D G T LH A + E I+ E L ++ A+ + +TA D+A+
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDVAD 273
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
++A + G T V LL + G + + +G ALH A +VD+VK L+ + +
Sbjct: 44 FLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQ 101
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
D +G LH A ++ + L+ + A V + G+T L +
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDI 145
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ +A + DK G T LH+A + EVVKLLLEA A V DK
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDK 88
Query: 199 FGNTALHVA 207
FG TA ++
Sbjct: 89 FGKTAFDIS 97
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V L++ +G + NG LH AAR GH++VVK LL + +
Sbjct: 28 LLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 162 TDKKGQTALHMAVKGQSCEVVKLL 185
DK G+TA +++ + ++ ++L
Sbjct: 87 -DKFGKTAFDISIDNGNEDLAEIL 109
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V DK G+T LH+A R E+V LL
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 81
Query: 226 NVNALTRDHKTALDIA 241
+V A + KTA DI+
Sbjct: 82 DVXAQDKFGKTAFDIS 97
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLD 85
K+++G PLH+AA GH +V++LL+
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ +A + DK G T LH+A + EVVKLLLEA A V DK
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDK 70
Query: 199 FGNTALHVA 207
FG TA ++
Sbjct: 71 FGKTAFDIS 79
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V DK G+T LH+A R E+V LL
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 63
Query: 226 NVNALTRDHKTALDIA 241
+VNA + KTA DI+
Sbjct: 64 DVNAQDKFGKTAFDIS 79
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + NG LH AAR GH++VVK LL
Sbjct: 3 GSDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
+ DK G+TA +++ + ++ ++L
Sbjct: 62 GADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLD 85
K+++G PLH+AA GH +V++LL+
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 52 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 111
S++E L + + +H A QG + ++ + ++ T TPL+ AA G
Sbjct: 8 SSRENLYFQGANSLS-VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI 65
Query: 112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 171
AVV E L ++G ++ ++AL A +G+ D+VK LL + D G T L
Sbjct: 66 AVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLL 123
Query: 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 222
AV G + VK+LLE+ A + D N+ A+ + R + I + LL L
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VNE + G T L A H++ V LL+ T + SG++ + +A G+ ++ Q
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAVALGYRSVQQ 168
Query: 82 VLLDH 86
V+ H
Sbjct: 169 VIESH 173
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 68 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
+H A QG + ++ + ++ T TPL+ AA G AVV E L ++G ++
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVV-EFLLQNGADPQL 64
Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
++AL A +G+ D+VK LL + D G T L AV G + VK+LLE
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 188 ADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 222
+ A + D N+ A+ + R + I + LL L
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ + GF PL AA G A+V+ LL + DP Q G + L A ++G+T +V
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIV 85
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
LL + E NG L +A HV VK LL TD G ++ +AV
Sbjct: 86 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VNE + G T L A H++ V LL+ T + SG++ + +A G+ ++ Q
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAVALGYRSVQQ 152
Query: 82 VLLDH 86
V+ H
Sbjct: 153 VIESH 157
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL+ AA G AVV E L ++G ++ ++AL A +G+ D+VK LL +
Sbjct: 36 TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 93
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 216
D G T L AV G + VK+LLE+ A + D N+ A+ + R + I
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 217 TELLSL 222
+ LL L
Sbjct: 154 SHLLKL 159
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ + GF PL AA G A+V+ LL + DP Q G + L A ++G+T +V
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIV 83
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
LL + E NG L +A HV VK LL TD G ++ +AV
Sbjct: 84 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VNE + G T L A H++ V LL+ T + SG++ + +A G+ ++ Q
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP--TIETDSGYNSMDLAVALGYRSVQQ 150
Query: 82 VLLDH 86
V+ H
Sbjct: 151 VIESH 155
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + D+KG T LH+A E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH-GADVNAHDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G+T LH+A EIV E+L +VNA + KTA DI+
Sbjct: 79 DGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 120
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN + G T L AAD H+E+V LLK+ + + G PLH+AA+ GH IV+
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD--VNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 82 VLLDH 86
VLL H
Sbjct: 98 VLLKH 102
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA H +V E+L K G + ++G LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +++ G T L AA +GH+E+V LLK+ + ++ G PLH+AA GH IV+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNARDIWGRTPLHLAATVGHLEIVE 97
Query: 82 VLLDH 86
VLL++
Sbjct: 98 VLLEY 102
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G LH AA++GH+++V+ LL + R D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVA 207
V DKFG TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNARDI 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156
+ TPL AA RGH +V E+L K G + G+ LH AA GH+++V+ LL
Sbjct: 46 AGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 157 QLARRTDKKGQTALHMAVKGQSCEVVKLL 185
+ + DK G+TA +++ + ++ ++L
Sbjct: 105 DVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +++ G T L AA +GH+E+V LLK+ + + G PLH+AA GH IV+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDSWGRTPLHLAATVGHLEIVE 97
Query: 82 VLLDH 86
VLL++
Sbjct: 98 VLLEY 102
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G LH AA++GH+++V+ LL + +D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
V DKFG TA ++ ++ L L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA RGH +V E+L K G + S S G+ LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
+ DK G+TA +++ + ++ ++L
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDS 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 160
PL AA RG+ + + E L G+ + ++ G AL++A GH D+V+ L ++
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 161 RTDKKGQTALHMAVKGQSCEVVKLLL 186
+ +K G TALH A ++V+LLL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +++ G TAL+ A GH ++V L E L ++N+ G LH AA +G+ IVQ
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-LNQQNKLGDTALHAAAWKGYADIVQ 157
Query: 82 VLL 84
+LL
Sbjct: 158 LLL 160
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
N LH AA++G++ ++ L + DK G TAL+ A G ++V+ L +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 194 MLPDKFGNTALHVATRKKRTEIVTELLS 221
+K G+TALH A K +IV LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
+PLH AA +G+ + ++ LD+ ++ + +T L A GH +V L ++ +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVEXLFTQPN--I 131
Query: 126 EISRSN--GKNALHFAARQGHVDVVKALLSK 154
E+++ N G ALH AA +G+ D+V+ LL+K
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +E G T L+ A GH+E+V LLK + + GF PLH+AA GH I +
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD--VNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 82 VLLDH 86
VLL H
Sbjct: 98 VLLKH 102
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + + D+ G T L++A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 253
G T LH+A EI E+L +VNA + KTA DI+ G +E+ +EI
Sbjct: 79 IGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI 131
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL A GH +V E+L K+G + + G LH AA GH+++ + LL +
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +++ G T L AA +GH+E+V LLK+ + + G PLH+AA GH IV+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDIWGRTPLHLAATVGHLEIVE 97
Query: 82 VLLDH 86
VLL++
Sbjct: 98 VLLEY 102
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G LH AA++GH+++V+ LL + +D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVA 207
V DKFG TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDI 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
TPL AA RGH +V E+L K G + S G+ LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLL 185
+ DK G+TA +++ + ++ ++L
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
+FT +G+ V L +T+ L + + GF PLH A +G A+V++L+ ++
Sbjct: 4 IFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN- 61
Query: 93 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
+ TPL AA+ GH +V +LL + ++ +G LH+A G V + L+
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLV 120
Query: 153 S 153
+
Sbjct: 121 A 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 65 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 124
D + +G+ V++ LD+ + +PL A G +AVV E+L G
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 59
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
+ + LH AA GH D+V+ LL + ++ G LH A +V +
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 118
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
L+ A+ A+V + +K+G + A R E++ E N+N +
Sbjct: 119 LV-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 162
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
+N+ ++ G + L A +G VV L+ + + NR PLH+AA GH IVQ
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
LL + ++ N PL A G V +L++ +G L+ I G+
Sbjct: 85 KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 136
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQT 168
VD KA L + L R +K GQ
Sbjct: 137 ---VDKAKAPLRE--LLRERAEKMGQN 158
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 13 EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA 72
E+ +R + +N +N +T L AA GH ++V +LL+Y K + N G PLH A
Sbjct: 51 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHYAC 108
Query: 73 VQGHHAIVQVLL 84
G + + L+
Sbjct: 109 FWGQDQVAEDLV 120
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
R+G+ V+ L + D G + LH A + VV++L+ A I ++ ++
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRG 66
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
+T LH+A +IV +LL ++NA+ L A
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYA 107
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 31 TALFTAADKGHIEVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
+ L A GH+ V LLK+ + G+T + PL A V G V +LL H S
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGAS 150
Query: 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
+ + A+P+ AA RGH VN L++ GG ++ S+ L+ A VK
Sbjct: 151 VQPES--DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK 207
Query: 150 ALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADA 190
LL A KGQ + LH V+ S E+ LL++ A
Sbjct: 208 KLLESG---ADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 39/193 (20%)
Query: 63 SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 89
S + P+H AA+ GH + V++LL H
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
++ T + TPL +A G VN LL G S+ + +H AAR+GHV+ V
Sbjct: 118 VNGVTADWH-TPLFNACVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVN 174
Query: 150 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209
+L++ + + G T L++A + Q VK LLE+ A + K ++ LH R
Sbjct: 175 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVR 231
Query: 210 KKRTEIVTELLSL 222
E+ L+
Sbjct: 232 TASEELACLLMDF 244
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N + L AA G +E V +L + + R PLH AA ++V+ LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 67
Query: 86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
H + PL +A + GH V ELL K G ++ ++ LH AA +G
Sbjct: 68 HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 125
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
++ K LL DP + ++ G T L + G + ++ LL DAA++
Sbjct: 126 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAALL 170
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 107
Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
D + T LH A K + EI LL + RD T LD+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 151
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
G L A GH EV L+K+ + + F PLH AA +G + I ++LL H
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
DP+ G TPL G T + +LL D LL+ ++
Sbjct: 137 DPTKKNRDG---NTPL-DLVKDGDTD-IQDLLRGDAALLDAAK 174
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
+FT +G+ V L +T+ L + + GF PLH A +G A+V++L+ ++
Sbjct: 9 IFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN- 66
Query: 93 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
+ TPL AA+ GH +V +LL + ++ +G LH+A G V + L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLV 125
Query: 153 S 153
+
Sbjct: 126 A 126
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 65 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 124
D + +G+ V++ LD+ + +PL A G +AVV E+L G
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
+ + LH AA GH D+V+ LL + ++ G LH A +V +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
L+ A+ A+V + +K+G + A R E++ E N+N +
Sbjct: 124 LV-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 167
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
+N+ ++ G + L A +G VV L+ + + NR PLH+AA GH IVQ
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 82 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
LL + ++ N PL A G V +L++ +G L+ I G+
Sbjct: 90 KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 141
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQT 168
VD KA L + L R +K GQ
Sbjct: 142 ---VDKAKAPLRE--LLRERAEKMGQN 163
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 13 EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA 72
E+ +R + +N +N +T L AA GH ++V +LL+Y K + N G PLH A
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHYAC 113
Query: 73 VQGHHAIVQVLL 84
G + + L+
Sbjct: 114 FWGQDQVAEDLV 125
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 96 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 155
P + + G+ V L L +G + LH+A R+G VV+ L+ +
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 156 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
++ ++ T LH+A ++V+ LL+ A I + ++ GN LH A + ++
Sbjct: 63 ARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQV 120
Query: 216 VTELLS 221
+L++
Sbjct: 121 AEDLVA 126
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 63 SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 89
S + P+H AA+ GH + V++LL H
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
++ T + TPL +A G VN LL + G ++ S+ + +H AAR+GHV+ V
Sbjct: 62 VNGVTADWH-TPLFNACVSGSWDCVN-LLLQHGASVQ-PESDLASPIHEAARRGHVECVN 118
Query: 150 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209
+L++ + + G T L++A + Q VK LLE+ A + K ++ LH R
Sbjct: 119 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVAR 175
Query: 210 KKRTEIVTELLSL 222
E+ L+
Sbjct: 176 TASEELACLLMDF 188
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 31 TALFTAADKGHIEVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
+ L A GH+ V LLK+ + G+T + PL A V G V +LL H S
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGAS 94
Query: 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
+ + A+P+ AA RGH VN L++ GG ++ S+ L+ A VK
Sbjct: 95 VQPES--DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK 151
Query: 150 ALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADA 190
LL A KGQ + LH + S E+ LL++ A
Sbjct: 152 KLLESG---ADVNQGKGQDSPLHAVARTASEELACLLMDFGA 190
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G + LH AA+ GH + LL RT K +T LHMA +V++LL+ A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLK-HGA 91
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
V D TALH AT E+V ELL +V+ ++ KTA DI+
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDIS 140
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD--PLHIAAVQGHHAIVQVLLD 85
LG + L AA GH LL+ G++R R+ D PLH+AA +GH IV+VLL
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
H ++ T L A H VV ELL K G + K A + G+
Sbjct: 89 HGADVN-AKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 146 DVVKAL 151
D+ + L
Sbjct: 147 DLAEIL 152
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 93 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNALHFAARQGHVDVVKAL 151
TT +PL AA GH + LL G+ +R+ + LH AA +GH ++V+ L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
L + + D TALH A + EVV+LL++ A V KF TA ++
Sbjct: 87 LKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDIS 140
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N + L AA G +E V +L + + R PLH AA ++V+ LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 63
Query: 86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
H + PL +A + GH V ELL K G ++ ++ LH AA +G
Sbjct: 64 HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
++ K LL DP + ++ G T L + G + ++ LL DAA+
Sbjct: 122 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 165
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 103
Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
D + T LH A K + EI LL + RD T LD+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 147
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L+ +G + + G LH AA GH+++V+ LL K
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ T G+T LH+A E+V++LL+ A V DKFG TA ++ +
Sbjct: 69 NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127
Query: 215 IVTELLSL 222
+ L L
Sbjct: 128 LAEILQKL 135
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123
G PLH+AA+ GH IV+VLL + ++ TG + TPL AA H +V E+L K G
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWADHLEIV-EVLLKHGA 104
Query: 124 LLEISRSNGKNALHFAARQGHVDVVKAL 151
+ GK A + G+ D+ + L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
+G + + + + VN + G T L AA GH+E+V LLK T +G
Sbjct: 24 AGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT--GNTGR 81
Query: 66 DPLHIAAVQGHHAIVQVLLDH 86
PLH+AA H IV+VLL H
Sbjct: 82 TPLHLAAWADHLEIVEVLLKH 102
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V D +G+T LH+A EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKD 285
+VNA +T L +A + + EI + L + GA ++N +D+ KT I D
Sbjct: 72 DVNATGNTGRTPLHLA----AWADHLEIVEVLLKHGA----DVN-AQDKFGKTAFDISID 122
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
T L AA + +V LL++ + K++ G PLH A GH+ + ++LL H +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 150
+ TPL AA++ V + LLS G + +GK+A VD
Sbjct: 118 N-AMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSA---------VD---- 162
Query: 151 LLSKDPQLARR--TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH--V 206
++ P+L R + KG + L A + +V K L A I + TALH V
Sbjct: 163 -MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAV 219
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
A+ + + V ELL NVN +D T L +A
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 30/217 (13%)
Query: 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
G L A GH EV LLK+ + + F PLH AA + + +LL H
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGA--CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 87 DPSLSQTTGPS----NATP----LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
DP+L G S TP ++ +GH+ + +++ L ++ ++ ++F
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA---AREADLAKVKKTLALEIINF 205
Query: 139 AARQGHVD----VVKALLSKDPQLARRTDKKG----------QTALHMAVKGQSCEVVKL 184
Q H V +L K Q+A +KG T LH+A + +V+++
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
L + A + L D G TALH A + LLS
Sbjct: 266 LHKHGAKMNAL-DSLGQTALHRAALAGHLQTCRLLLS 301
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQ 157
TPL AA R H V+ E+L K G + S G+ ALH AA GH+ + LLS DP
Sbjct: 249 TPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 158 L 158
+
Sbjct: 308 I 308
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 25/178 (14%)
Query: 133 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
K+ L AAR G+ + + ALL+ +D + T LH+A +V+LLL+ A
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGAD 83
Query: 193 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE 252
V DK G LH A E VTELL VN A+D+ + P E AS+
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYE-VTELLLKHGACVN--------AMDLWQFTPLHEAASK 134
Query: 253 --IKDC-----------LARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTN 297
++ C L C A ++ P ELR+ +T K H+ L+ R +
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDM-APTPELRERLTYEFKG-HSLLQAAREAD 190
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 13 EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA 72
EV + +N ++ LG+TAL AA GH++ LL Y + + + GF AA
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII--SLQGF----TAA 317
Query: 73 VQGHHAIVQVLLDHDP 88
G+ A+ Q+L + P
Sbjct: 318 QMGNEAVQQILSESTP 333
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N + L AA G +E V +L + + R PLH AA ++V+ LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 65
Query: 86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
H + PL +A + GH V ELL K G ++ ++ LH AA +G
Sbjct: 66 HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
++ K LL DP + ++ G T L + G + ++ LL DAA+
Sbjct: 124 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 167
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 105
Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
D + T LH A K + EI LL + RD T LD+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 149
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
AAR G D V+ L++ + DK G T LH+A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
G T LH+ EIV LL +VNA + KTA DI+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN +++G T L AA H+E+V LLK + + G PLH+ A+ GH IV+
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD--VNAIDAIGETPLHLVAMYGHLEIVE 97
Query: 82 VLLDH 86
VLL H
Sbjct: 98 VLLKH 102
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G L+ AA G V +L +G + G LH AA H+++V+ LL K
Sbjct: 11 GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
+ D G+T LH+ E+V++LL+ A V DKFG TA ++ +
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127
Query: 215 IVTELLSL 222
+ L L
Sbjct: 128 LAEILQKL 135
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN ++ +GET L A GH+E+V LLK+ + +++ G I+ G+ + +
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 82 VL 83
+L
Sbjct: 131 IL 132
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV L+ A+ A V DK G T LH+A EIV LL
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 226 NVNALTRDHKTAL 238
+VNA+ +T L
Sbjct: 72 DVNAIDAIGETPL 84
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ + + GF PL A+ G V+ LL+ DP + + L A+T G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
LL +D + I NG L +A R HV V+ALL++ L D G T + +AV
Sbjct: 86 GLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 194
++H A QG +D +K L K L + D++G T L A E V+ LLE A +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 195 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
L K +AL +A+ T+IV LL D ++N + T L
Sbjct: 65 LA-KERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
R +N + G T L A H++ V LL LT + SG+ P+ +A G+
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD--LTTEADSGYTPMDLAVALGYR 148
Query: 78 AIVQVLLDHDPSLSQTTGPSNATP 101
+ QV+ +H L Q SN P
Sbjct: 149 KVQQVIENHILKLFQ----SNLVP 168
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
++ +G PLH A + Q+LL + + TPL+ AA +V +L++
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVK 175
D + + ++GK ALH+AA + + V LL ++D Q D K +T L +A +
Sbjct: 140 ADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 176 GQSCEVVKLLLE 187
S E K LL+
Sbjct: 194 EGSYEASKALLD 205
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 100 TPLVSAATRG--------------HTA-VVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
TPL+ AA RG TA V+++LL++ L G+ +LH AAR
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 145 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
D K LL A D G+T LH AV + V ++LL A + G T L
Sbjct: 64 ADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 248
+A R +V +L++ D ++NA KTAL A + ++E
Sbjct: 123 ILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTE 165
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 100 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
TP +AA + +++LL +D ++ NG+ AL F A G V+ L L
Sbjct: 47 TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
R + G TALHMA EVV+ L+E A I + D+ G TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
D+ G+TAL S + V+LL EA A + + G TALH+A R E+V L+ L
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
V+ + + L +TD+ G+TALH+A + + K LLEA +A + D G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
A + LL T+++A D T L +A L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARL 99
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
+S+ N+ + GETAL AA + LL+ S + ++ G PLH A
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXI--QDNMGRTPLHAAVSADAQG 69
Query: 79 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
+ Q+LL + + TPL+ AA ++ +L++ + + GK+ALH+
Sbjct: 70 VFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD-DLGKSALHW 128
Query: 139 AARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
AA +VD LL +KD Q + K +T L +A + S E K+LL+
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQ-----NNKEETPLFLAAREGSYETAKVLLD 176
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 171
+V+++ + + L + G+ ALH AAR D K LL A D G+T LH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLH 60
Query: 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 231
AV + V ++LL A + G T L +A R ++ +L++ +VNA+
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVD 119
Query: 232 RDHKTAL 238
K+AL
Sbjct: 120 DLGKSAL 126
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNKEETPLFLAAREGSYETAK 172
Query: 82 VLLDH 86
VLLDH
Sbjct: 173 VLLDH 177
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
E+ L AA + ++ +++LLK+ E + ++ G LHIAA+ + VL++ P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
L P+ S G TA LH A +V++V+
Sbjct: 63 LV-------FEPMTSELYEGQTA-----------------------LHIAVINQNVNLVR 92
Query: 150 ALLSKDPQLARRTDKK------------GQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 197
ALL++ ++ R G+ L A S E+V+LL+E A I D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQD 151
Query: 198 KFGNTALHVATRKKRTEIVTELLSL 222
GNT LH+ + ++ +L
Sbjct: 152 SLGNTVLHILILQPNKTFACQMYNL 176
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 100 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
TP +AA + +++LL +D ++ NG+ AL F A G V+ L L
Sbjct: 46 TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
R + G TALHMA EVV+ L+E A I + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
D+ G+TAL S + V+LL EA A + + G TALH+A R E+V L+ L
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 5 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
LSGA +V E+R + E+ N G+TAL G + ELLK +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 69
Query: 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
++ SG P+H AA G ++VL++H ++ G + A P+ A GHTAVV+ L
Sbjct: 70 -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 127
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
++ L + G L A ++G D+V L
Sbjct: 128 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
G TA+ ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 52 GSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGAL 109
Query: 169 ALHMAVK-GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
+H+AV+ G + V L E+D + D G T L +A ++ ++V
Sbjct: 110 PIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLV 155
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH---FAARQGHVDVVKALLSKDPQL 158
L AA RG V LL ++ + GK AL F + ++++K S + Q
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 70
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 218
D G + +H A + + +K+L+E A V +PD G +H+A ++ T +V+
Sbjct: 71 ----DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 219 LLSLPDTNVN----------ALTRDHKTALDIAEG 243
L + D + AL R + +DI +G
Sbjct: 126 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 160
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 5 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
LSGA +V E+R + E+ N G+TAL G + ELLK +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 63
Query: 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
++ SG P+H AA G ++VL++H ++ G + A P+ A GHTAVV+ L
Sbjct: 64 -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 121
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
++ L + G L A ++G D+V L
Sbjct: 122 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
G TA+ ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 46 GSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGAL 103
Query: 169 ALHMAVK-GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
+H+AV+ G + V L E+D + D G T L +A ++ ++V
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLV 149
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH---FAARQGHVDVVKALLSKDPQL 158
L AA RG V LL ++ + GK AL F + ++++K S + Q
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 64
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 218
D G + +H A + + +K+L+E A V +PD G +H+A ++ T +V+
Sbjct: 65 ----DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 219 LLSLPDTNVN----------ALTRDHKTALDIAEG 243
L + D + AL R + +DI +G
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
+ + + GF PL A+ G V+ LL+ DP + + L A+T G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
LL +D + I NG L +A HV V+ALL++ L D G T + +AV
Sbjct: 86 GLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 194
++H A QG +D +K L K L + D++G T L A E V+ LLE A +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 195 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
L K +AL +A+ T+IV LL D ++N + T L
Sbjct: 65 LA-KERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
R +N + G T L A H++ V LL LT + SG+ P+ +A G+
Sbjct: 91 RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD--LTTEADSGYTPMDLAVALGYR 148
Query: 78 AIVQVLLDHDPSLSQTTGPSNATP 101
+ QV+ +H L Q SN P
Sbjct: 149 KVQQVIENHILKLFQ----SNLVP 168
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 95 GPSNATPLVSAATRGH-------------TAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
GP TPL+ A+ G AV+++ + + L + G+ ALH AAR
Sbjct: 8 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 67
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 68 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 127 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
+S+ N+ + GETAL AA + LL+ S + ++ G PLH A
Sbjct: 48 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQG 105
Query: 79 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
+ Q+L+ + + TPL+ AA ++ +L++ + + GK+ALH+
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHW 164
Query: 139 AARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
AA +VD LL +KD Q + + +T L +A + S E K+LL+
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLD 212
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAK 208
Query: 82 VLLDH 86
VLLDH
Sbjct: 209 VLLDH 213
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 95 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
GP TPL+ A+ G AV+++ + + L + G+ ALH AAR
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
+S+ N+ + GETAL AA + LL+ S + ++ G PLH A
Sbjct: 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQG 104
Query: 79 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
+ Q+L+ + + TPL+ AA ++ +L++ + + GK+ALH+
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHW 163
Query: 139 AARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
AA +VD LL +KD Q + + +T L +A + S E K+LL+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLD 211
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAK 207
Query: 82 VLLDH 86
VLLDH
Sbjct: 208 VLLDH 212
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 116 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
+ + ++GG L+ ++G ALH+AA D +K LL K L ++ G+TAL +A K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 249
Query: 176 GQSCEVVKLLLEADAAIVMLP 196
E +LL +A A P
Sbjct: 250 KHHKECEELLEQAQAGTFAFP 270
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
GK L AAR G D V+ L++ + + DK G T LH+A + E+V++LL+A A
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 192 IVMLPDKFGNTALHVA 207
V DKFG TA ++
Sbjct: 60 DVNAQDKFGKTAFDIS 75
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
G+ L A GQ EV +L A+ A V DK G T LH+A R+ EIV E+L
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 NVNALTRDHKTALDIA 241
+VNA + KTA DI+
Sbjct: 60 DVNAQDKFGKTAFDIS 75
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L+ AA G V L++ +G + +G LH AAR+GH+++V+ LL +
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEA 188
DK G+TA +++ + ++ ++L +A
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 60 KNRSGFDPLHIAAVQGHHAIVQVLL 84
K++ G+ PLH+AA +GH IV+VLL
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
V+ + + L +TD+ G+TALH+A + + K LLEA +A + D G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 64
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
A + L+ T+++A D T L +A L
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
+S+ N+ + GETAL AA + LL+ S + ++ G PLH A
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQG 72
Query: 79 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
+ Q+L+ + + TPL+ AA ++ +L++ + + GK+ALH+
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHW 131
Query: 139 AARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
AA +VD LL +KD Q + + +T L +A + S E K+LL+
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLD 179
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 171
AV+++ + + L + G+ ALH AAR D K LL A D G+T LH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH 63
Query: 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 231
AV + V ++L+ A + G T L +A R ++ +L++ +VNA+
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVD 122
Query: 232 RDHKTAL 238
K+AL
Sbjct: 123 DLGKSAL 129
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAK 175
Query: 82 VLLDH 86
VLLDH
Sbjct: 176 VLLDH 180
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 157
N TPL+ A G +++L+ ++ LE G AL +A + + + + LLSK
Sbjct: 35 NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF--GNTALHVATRKKRTEI 215
+ + D G+T L ++ E+ LLE A + D+ G T L VA++ R+EI
Sbjct: 94 VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEI 149
Query: 216 VTELLSL 222
V +LL L
Sbjct: 150 VKKLLEL 156
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
PL +A + G + L+++ L + +T L+ A + +LLSK G +
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVN 95
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+GK L ++ G+ ++ LL + R + +G+T L +A K E+VK LL
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLL 154
Query: 187 EADAAI 192
E A I
Sbjct: 155 ELGADI 160
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 116 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
+ + ++GG L+ ++G ALH+AA D +K LL K L ++ G+TAL +A K
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 268
Query: 176 GQSCEVVKLLLEADAAIVMLP 196
E +LL +A A P
Sbjct: 269 KHHKECEELLEQAQAGTFAFP 289
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 49 LKYSTKEGLTRKNRSGFDPLHIA-----AVQGHHAIVQVLLDH--DPSLSQTTGPSNATP 101
L+ + E + R F+PL +A +++G +VQ ++ DPSL G T
Sbjct: 17 LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG---ITA 73
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
L +A GHT +V + L + G + + S+G LH AA +V V K L+ +
Sbjct: 74 LHNAVCAGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 162 TDKKGQTA 169
T QTA
Sbjct: 133 TYSDMQTA 140
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+ G ALH A GH ++VK L+ + D G T LH A + +V K L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 187 EADAAIVML 195
E+ AA+ +
Sbjct: 124 ESGAAVFAM 132
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N+ G TAL A GH E+V L+++ + + G+ PLH AA + + + L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN--VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 170 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
L +++G+ V +++ E D LP+ G TALH A TEIV L+ NVNA
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNA 98
Query: 230 LTRDHKTALDIA 241
D T L A
Sbjct: 99 ADSDGWTPLHCA 110
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 95 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
GP TPL+ A+ G AV+++ + + L + G ALH AA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAA 66
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
+S+ N+ + G TAL AA + LL+ S + ++ G PLH A
Sbjct: 47 ASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQG 104
Query: 79 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
+ Q+L+ + + TPL+ AA ++ +L++ + + GK+ALH+
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHW 163
Query: 139 AARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
AA +VD LL +KD Q + + +T L +A + S E K+LL+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLD 211
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAK 207
Query: 82 VLLDH 86
VLLDH
Sbjct: 208 VLLDH 212
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 49 LKYSTKEGLTRKNRSGFDPLHI---AAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLV 103
L+ + E + R F+PL + ++++G +VQ ++ DPSL G T L
Sbjct: 19 LRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG---ITALH 75
Query: 104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD 163
+A GHT +V + L + G + + S+G LH AA +V V K L+ + T
Sbjct: 76 NAVCAGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 164 KKGQTA 169
QTA
Sbjct: 135 SDMQTA 140
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
+ G ALH A GH ++VK L+ + D G T LH A + +V K L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 187 EADAAIVML 195
E+ AA+ +
Sbjct: 124 ESGAAVFAM 132
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
N+ G TAL A GH E+V L+++ + + G+ PLH AA + + + L++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN--VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 170 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
L +++G+ V +++ E D LP+ G TALH A TEIV L+ NVNA
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNA 98
Query: 230 LTRDHKTALDIA 241
D T L A
Sbjct: 99 ADSDGWTPLHCA 110
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 45 VNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 103
++E+ Y K E + R G PLH AA G I++ LL ++ + TPL+
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLL 73
Query: 104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
SA GH + V LLSK G + +G AL Q +KALL
Sbjct: 74 SAVYEGHVSCVKLLLSK-GADKTVKGPDGLTALEATDNQA----IKALL 117
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA- 190
G+ LH+AA G +++++ LL K + DK T L AV VKLLL A
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 191 AIVMLPDKFGNTAL 204
V PD G TAL
Sbjct: 94 KTVKGPD--GLTAL 105
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 5/199 (2%)
Query: 26 NELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVL 83
+E G+T L A +G++ V+ L+ + G L N PLH+A + ++V++L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 84 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAAR 141
+ S ++ R T + L S G L++ N G ALH A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
+ V+ LL + + K G++ L AV+ S +V+LLL+ A V G+
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGS 184
Query: 202 TALHVATRKKRTEIVTELL 220
+ALH A+ + +V L+
Sbjct: 185 SALHSASGRGLLPLVRTLV 203
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 126 EISRSNG----KNALHFAAR---QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
+I +NG + ALH A R + + +V L+ L ++T KG TALH +
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDN 217
Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR---TEIVTELLS 221
E +KLLL A+I + ++ G T L +A R K E++T+ LS
Sbjct: 218 AECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
+ L TAA +G +E V +LL+ NR G P+ + + G + ++LL H
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVM-MMGSAQVAELLLLHGAE 69
Query: 90 LSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
+ + P+ AA G T VV L + G L++ + G+ + A QGH D+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVV---LHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 148 VKAL 151
+ L
Sbjct: 127 ARYL 130
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 196 PDKFGNTALHVATRKKRTEIVT 217
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 155 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
+P++ARR D+ G +H A + + ++ LLE + A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPL 107
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 241
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 38/158 (24%)
Query: 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
G TAL G+ E+ LL L K+R+GF +H AA G +Q LL++
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLENQ 93
Query: 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
++ I + G LH AA++GH+ V
Sbjct: 94 ADVN-----------------------------------IEDNEGNLPLHLAAKEGHLRV 118
Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
V+ L+ + KG TA +A EVV L+
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 45 VNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 103
++E+ Y K E + R G PLH AA G I++ LL ++ + TPL+
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLL 78
Query: 104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
SA GH + V LLSK G + +G A Q +KALL
Sbjct: 79 SAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQA----IKALL 122
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
G+ LH+AA G +++++ LL K + DK T L AV VKLLL A
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G +H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVT 217
V + G+TA +A R E+V+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 155 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 241
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
I + G LH AA++GH+ VV+ L+ + KG TA +A EVV L+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
G+ ALH+AA+ + +VK L+ + + D+ G+T + +A + EVV L++ A+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 192 IVMLPDKFGNTALHVATRKKRTEIV 216
+ + D +TA +A IV
Sbjct: 339 VEAV-DATDHTARQLAQANNHHNIV 362
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVV---KALLSK----DPQLARRTDK---KGQTALH 171
G + E+ R NG AL A D V K L+ K D A R D KG+TALH
Sbjct: 226 GDIEELDR-NGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284
Query: 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 231
A + + +VK L+ + D+ G T + +A ++ R E+V L+ +V A+
Sbjct: 285 YAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ-GASVEAVD 343
Query: 232 RDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 264
TA +A+ + I D RC R
Sbjct: 344 ATDHTARQLAQ----ANNHHNIVDIFDRCRPER 372
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 196 PDKFGNTALHVATRKKRTEIVT 217
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 155 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 241
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 38/158 (24%)
Query: 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
G TAL G+ E+ LL L K+R+GF +H AA G +Q LL+
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGQLDTLQTLLEFQ 93
Query: 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
++ I + G LH AA++GH+ V
Sbjct: 94 ADVN-----------------------------------IEDNEGNLPLHLAAKEGHLRV 118
Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
V+ L+ + KG TA +A EVV L+
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 196 PDKFGNTALHVATRKKRTEIVT 217
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 155 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 241
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 38/158 (24%)
Query: 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
G TAL G+ E+ LL L K+R+GF +H AA G +Q LL+
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
++ I + G LH AA++GH+ V
Sbjct: 94 ADVN-----------------------------------IEDNEGNLPLHLAAKEGHLRV 118
Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
V+ L+ + KG TA +A EVV L+
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 196 PDKFGNTALHVATRKKRTEIVT 217
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 155 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 241
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 38/158 (24%)
Query: 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
G TAL G+ E+ LL L K+R+GF +H AA G +Q LL+
Sbjct: 37 FGRTAL-QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
++ I + G LH AA++GH+ V
Sbjct: 94 ADVN-----------------------------------IEDNEGNLPLHLAAKEGHLRV 118
Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
V+ L+ + KG TA +A EVV L+
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 5 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
LSGA +V E+R + E+ N G+TAL G V ELLK +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNV- 69
Query: 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV-- 114
++ SG P+H AA G ++VL++H D + +TG + P+ A GH++VV
Sbjct: 70 -QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHLAIREGHSSVVSF 125
Query: 115 ----NELLSKDG-GL--LEISRSNGKNALHFAARQGHV 145
++L +D GL LE++R G L QGH+
Sbjct: 126 LAPESDLHHRDASGLTPLELARQRGAQNL-MDILQGHM 162
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
G AV ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 52 GSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSL 109
Query: 169 ALHMAVKGQSCEVVKLL 185
+H+A++ VV L
Sbjct: 110 PIHLAIREGHSSVVSFL 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 5 LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
LSGA +V E+R + E+ N G+TAL G V ELLK +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNV- 71
Query: 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV-- 114
++ SG P+H AA G ++VL++H D + +TG + P+ A GH++VV
Sbjct: 72 -QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHLAIREGHSSVVSF 127
Query: 115 ----NELLSKDG-GL--LEISRSNGKNALHFAARQGHV 145
++L +D GL LE++R G L QGH+
Sbjct: 128 LAPESDLHHRDASGLTPLELARQRGAQNL-MDILQGHM 164
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
G AV ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 54 GSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSL 111
Query: 169 ALHMAVKGQSCEVVKLL 185
+H+A++ VV L
Sbjct: 112 PIHLAIREGHSSVVSFL 128
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 53/177 (29%)
Query: 93 TTGPSNATP-------LVSAATRGHTAVVNELLSKDGGLLEISRSNGK---NALHFAARQ 142
T+ PS P L S +RG V E L+ GLLE R N K ++ +
Sbjct: 3 TSAPSQQEPDRFDRDRLFSVVSRG----VPEELT---GLLEYLRWNSKYLTDSAYTEGST 55
Query: 143 GHVDVVKALL-------------------SKDPQL---ARRTDK--KGQTALHMAVKGQS 178
G ++KA+L S +P+ A+ TD+ +G +ALH+A++ +S
Sbjct: 56 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 115
Query: 179 CEVVKLLLEADAAIVMLPD------------KFGNTALHVATRKKRTEIVTELLSLP 223
+ VKLL+E A + + FG L +A K+ ++VT LL P
Sbjct: 116 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 172
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 159 ARRTDK--KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD------------KFGNTAL 204
A+ TD+ +G +ALH+A++ +S + VKLL+E A + + FG L
Sbjct: 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 205 HVATRKKRTEIVTELLSLP 223
+A K+ ++VT LL P
Sbjct: 141 SLAACTKQWDVVTYLLENP 159
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAV-QGHHAIVQVLLD 85
A AA+ GH+ V+N L + + E + AAV +GHH ++ LLD
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAXIQAENYYAFRWAAVGRGHHNVINFLLD 220
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS-L 90
A AA+ GH+ V+N L + + E + +AA GH ++ L + P+
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190
Query: 91 SQTTGPSNATPLVSAAT-RGHTAVVNELL 118
+ N AA RGH V+N LL
Sbjct: 191 TAXIQAENYYAFRWAAVGRGHHNVINFLL 219
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 136 LHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
+H AAR+G D V+ L+ P + R G TALH+A K + K L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLASVGEVHS 80
Query: 194 MLPDKFGNTALHVATRKKRTEIVTELL 220
+ G +H+A +T++V L+
Sbjct: 81 LW---HGQKPIHLAVXANKTDLVVALV 104
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 136 LHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
LH AA +VK LL D Q D KG TAL+ AV + + VKL ++ + +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
Query: 193 VMLPDKFGNTALHVATRKKRTEIVTELLS-LPDT 225
T+ + A IV+ LS +P T
Sbjct: 122 XFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPST 155
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 32/154 (20%)
Query: 102 LVSAATRG---HTAVVNELLSKDGGLLEISR----SNGKNALHFAA---RQGHVDVVKAL 151
L +A +RG A + E LSK L S S GK L A + G + L
Sbjct: 11 LFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPL 70
Query: 152 L-----SKDPQL---ARRTDK--KGQTALHMAVKGQSCEVVKLLLEADA-----AIVMLP 196
L S +PQ A+ TD +G +ALH+A++ +S + VKLL+E A A
Sbjct: 71 LQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFF 130
Query: 197 DK-------FGNTALHVATRKKRTEIVTELLSLP 223
K FG L +A K+ ++V+ LL P
Sbjct: 131 QKGQGTCFYFGELPLSLAACTKQWDVVSYLLENP 164
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 124 LLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRT 162
+L SNG L+ AAR G++ +V ALL DP +A ++
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 315
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 17 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA 72
I ++++N + G+T L AA G+I +V+ LL Y + N+SG P+ A
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA--NKSGLRPVDFGA 324
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 5 LSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEV--VNELLKYSTKEGLTRKNR 62
L+ E DT+ A SS + V ELG T H+E+ VN+ ++ L N
Sbjct: 240 LALTETDTQTANGSSSGLAYVKELGVT---------HVELLPVNDFAGVDEEKPLDAYNW 290
Query: 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 93
G++PLH A +G +A HDP +T
Sbjct: 291 -GYNPLHFFAPEGSYASNP----HDPQTRKT 316
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 94 TGPSNATPLVSAATRGHT-AVVNELLSKDGGLLEISRS----NGKNALHFAARQGHVDVV 148
+GP + T + +A + + +V +L++ G +I + G ALH +A +G DV
Sbjct: 64 SGPRSGTIITAAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVA 123
Query: 149 KALLSK--DPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEA 188
+ALL K DP L + H+ + KG ++ L+EA
Sbjct: 124 EALLEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLMEA 166
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
VN V++LG++AL AA +++ LLK + + +N PL +AA +G + +
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNKEETPLFLAAREGSYETAK 98
Query: 82 VLLDH 86
VLLDH
Sbjct: 99 VLLDH 103
>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
Resolution Dataset)
pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-I)
pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-Ii)
Length = 362
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 16 EIRSSVVNEVNELGETALFTAADKGH-IEVVNELLK 50
+I +V +V +G ++F A+DK H I+ +NE LK
Sbjct: 266 QILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALK 301
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 18/64 (28%)
Query: 143 GHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVVKLLLEA 188
G D + LL +AR+TD KGQTALH+A++ ++ +V LL+E
Sbjct: 68 GQNDTIALLLD----VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVEN 123
Query: 189 DAAI 192
A +
Sbjct: 124 GADV 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,091,215
Number of Sequences: 62578
Number of extensions: 415909
Number of successful extensions: 2142
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 442
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)