Query 011183
Match_columns 491
No_of_seqs 509 out of 2905
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 22:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b7b_A Euchromatic histone-lys 100.0 7.7E-40 2.6E-44 307.5 27.4 233 21-259 3-235 (237)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 3E-40 1E-44 314.1 21.4 230 21-259 2-244 (253)
3 1oy3_D Transcription factor in 100.0 1.5E-39 5E-44 313.3 22.9 221 22-245 2-269 (282)
4 1k1a_A B-cell lymphoma 3-encod 100.0 3.5E-39 1.2E-43 303.5 21.9 229 22-260 2-238 (241)
5 1wdy_A 2-5A-dependent ribonucl 100.0 9.2E-38 3.1E-42 300.7 30.0 248 8-266 18-281 (285)
6 2xai_A ASB-9, ankyrin repeat a 100.0 4.6E-38 1.6E-42 300.4 25.5 220 28-262 2-221 (261)
7 3d9h_A CDNA FLJ77766, highly s 100.0 7.1E-38 2.4E-42 303.2 25.4 228 20-262 50-278 (285)
8 1n11_A Ankyrin; clathrin, BAND 100.0 3.4E-37 1.2E-41 316.4 31.0 263 18-290 102-396 (437)
9 2dzn_A Probable 26S proteasome 100.0 1.1E-37 3.9E-42 290.8 24.9 214 29-244 2-218 (228)
10 3aji_A 26S proteasome non-ATPa 100.0 7.8E-38 2.7E-42 292.6 23.6 227 26-262 3-229 (231)
11 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-37 8.9E-42 317.3 29.4 264 18-292 3-266 (437)
12 3utm_A Tankyrase-1; tankyrase, 100.0 3.2E-37 1.1E-41 306.2 27.5 256 12-278 41-320 (351)
13 3ljn_A Hypothetical protein; a 100.0 2.9E-38 9.9E-43 316.6 19.8 238 16-264 7-270 (364)
14 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-36 4.4E-41 292.6 27.5 255 28-293 4-275 (285)
15 4b93_B Ankyrin repeat domain-c 100.0 3.1E-38 1.1E-42 303.0 15.7 217 24-245 6-229 (269)
16 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-37 3.9E-42 313.5 20.3 237 19-263 114-371 (373)
17 4g8k_A 2-5A-dependent ribonucl 100.0 3.1E-36 1.1E-40 298.6 28.5 261 19-293 48-323 (337)
18 3utm_A Tankyrase-1; tankyrase, 100.0 6.5E-37 2.2E-41 304.0 23.3 267 18-294 13-303 (351)
19 3eu9_A Huntingtin-interacting 100.0 1.3E-36 4.4E-41 285.2 23.0 233 22-264 2-236 (240)
20 4g8k_A 2-5A-dependent ribonucl 100.0 7.8E-36 2.7E-40 295.7 26.4 259 26-294 22-296 (337)
21 3d9h_A CDNA FLJ77766, highly s 100.0 5.9E-36 2E-40 289.7 23.4 244 25-279 11-263 (285)
22 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-36 6.6E-41 289.2 19.3 233 8-251 16-255 (261)
23 2f8y_A Notch homolog 1, transl 100.0 7.5E-36 2.5E-40 277.6 21.4 216 40-264 2-217 (223)
24 2fo1_E LIN-12 protein; beta-ba 100.0 1.2E-36 4.2E-41 306.0 16.1 261 20-293 85-368 (373)
25 1s70_B 130 kDa myosin-binding 100.0 2.2E-36 7.5E-41 294.1 17.4 212 26-243 37-274 (299)
26 3kea_A K1L; tropism, ANK repea 100.0 9E-36 3.1E-40 288.4 20.9 225 21-266 23-249 (285)
27 1ikn_D Protein (I-kappa-B-alph 100.0 8.8E-37 3E-41 286.8 11.8 218 23-244 2-229 (236)
28 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-35 5.6E-40 281.4 19.3 230 57-293 3-245 (253)
29 3aji_A 26S proteasome non-ATPa 100.0 5.8E-35 2E-39 273.1 22.6 212 7-225 18-229 (231)
30 2f8y_A Notch homolog 1, transl 100.0 6.9E-35 2.4E-39 271.1 21.8 203 19-227 14-217 (223)
31 1oy3_D Transcription factor in 100.0 1.2E-34 4.2E-39 278.8 22.4 217 57-280 2-267 (282)
32 3ljn_A Hypothetical protein; a 100.0 3.3E-35 1.1E-39 294.3 17.8 230 8-246 33-301 (364)
33 2rfa_A Transient receptor pote 100.0 3.9E-34 1.3E-38 267.8 21.1 196 28-228 2-224 (232)
34 3b7b_A Euchromatic histone-lys 100.0 1.7E-33 5.8E-38 264.2 25.2 216 56-279 3-218 (237)
35 3hra_A Ankyrin repeat family p 100.0 1.8E-33 6.1E-38 257.1 23.7 193 26-221 2-199 (201)
36 1k1a_A B-cell lymphoma 3-encod 100.0 1.3E-33 4.5E-38 265.3 20.7 222 58-288 3-233 (241)
37 2dzn_A Probable 26S proteasome 100.0 3.5E-33 1.2E-37 260.3 22.8 209 7-221 14-226 (228)
38 2pnn_A Transient receptor pote 100.0 2.6E-34 8.9E-39 276.1 11.8 217 19-238 3-271 (273)
39 4b93_B Ankyrin repeat domain-c 100.0 1.7E-33 5.8E-38 270.0 15.9 204 8-219 24-235 (269)
40 2rfa_A Transient receptor pote 100.0 2.8E-32 9.7E-37 255.1 20.9 194 63-264 2-223 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 3.9E-33 1.3E-37 261.9 14.8 200 59-265 3-211 (236)
42 3hra_A Ankyrin repeat family p 100.0 8.6E-32 2.9E-36 245.9 22.1 195 61-261 2-201 (201)
43 3kea_A K1L; tropism, ANK repea 100.0 1.1E-32 3.9E-37 266.6 17.0 215 38-267 8-224 (285)
44 3eu9_A Huntingtin-interacting 100.0 9.8E-32 3.3E-36 251.9 22.9 213 8-227 22-236 (240)
45 2etb_A Transient receptor pote 100.0 1.3E-32 4.5E-37 261.6 16.3 194 28-226 1-246 (256)
46 1s70_B 130 kDa myosin-binding 100.0 1.5E-32 5E-37 267.1 16.3 237 35-279 4-273 (299)
47 1sw6_A Regulatory protein SWI6 100.0 2.3E-32 7.7E-37 269.8 14.4 200 31-244 99-326 (327)
48 4gpm_A Engineered protein OR26 100.0 4.3E-31 1.5E-35 234.8 20.4 157 67-228 7-163 (169)
49 4gpm_A Engineered protein OR26 100.0 9E-31 3.1E-35 232.8 19.6 157 31-192 6-162 (169)
50 2etb_A Transient receptor pote 100.0 1.2E-31 4E-36 254.9 13.2 195 63-264 1-247 (256)
51 3jxi_A Vanilloid receptor-rela 100.0 3.2E-31 1.1E-35 252.5 14.3 198 26-226 2-250 (260)
52 2pnn_A Transient receptor pote 100.0 5.4E-31 1.8E-35 252.9 14.9 199 58-263 7-258 (273)
53 4hbd_A KN motif and ankyrin re 100.0 4.6E-31 1.6E-35 254.1 14.1 193 28-223 75-273 (276)
54 2rfm_A Putative ankyrin repeat 100.0 1.8E-29 6.2E-34 229.1 19.1 171 14-189 20-190 (192)
55 3jxi_A Vanilloid receptor-rela 100.0 1.3E-30 4.4E-35 248.3 11.4 198 61-265 2-252 (260)
56 3v30_A DNA-binding protein rfx 100.0 1.3E-29 4.6E-34 225.7 16.1 169 30-203 3-171 (172)
57 1sw6_A Regulatory protein SWI6 100.0 1.7E-30 5.7E-35 256.5 10.8 241 16-276 39-321 (327)
58 3v30_A DNA-binding protein rfx 100.0 6.8E-29 2.3E-33 221.1 18.2 170 64-237 2-171 (172)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 8.4E-29 2.9E-33 218.0 16.3 157 29-190 5-161 (162)
60 2rfm_A Putative ankyrin repeat 100.0 1.1E-28 3.8E-33 223.9 17.1 161 57-221 28-188 (192)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.4E-28 4.6E-33 216.7 16.9 159 63-226 4-162 (162)
62 3v31_A Ankyrin repeat family A 100.0 2.4E-28 8.3E-33 216.4 18.6 160 28-192 2-161 (167)
63 4hbd_A KN motif and ankyrin re 100.0 3.1E-29 1.1E-33 241.3 13.9 192 64-261 76-273 (276)
64 3v31_A Ankyrin repeat family A 100.0 6.3E-28 2.1E-32 213.7 18.1 155 63-221 2-156 (167)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.1E-28 2.8E-32 213.7 18.5 157 61-221 11-167 (169)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-27 3.8E-32 212.8 19.2 160 25-189 10-169 (169)
67 3f6q_A Integrin-linked protein 100.0 6.2E-28 2.1E-32 216.5 16.2 167 64-234 5-171 (179)
68 1awc_B Protein (GA binding pro 100.0 1.9E-27 6.5E-32 207.6 18.0 149 66-219 4-152 (153)
69 2vge_A RELA-associated inhibit 100.0 7.3E-30 2.5E-34 238.7 2.4 197 45-248 1-202 (229)
70 3twr_A Tankyrase-2; ankyrin re 100.0 8.6E-28 2.9E-32 212.4 14.6 157 26-187 5-161 (165)
71 3twr_A Tankyrase-2; ankyrin re 99.9 9.3E-28 3.2E-32 212.2 14.0 161 60-225 4-164 (165)
72 1awc_B Protein (GA binding pro 99.9 3.6E-27 1.2E-31 205.9 17.6 151 29-185 2-152 (153)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.3E-29 8E-34 236.9 2.9 210 26-245 2-229 (239)
74 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.9E-27 1.3E-31 206.1 16.9 153 29-187 2-154 (156)
75 2vge_A RELA-associated inhibit 99.9 1.3E-30 4.4E-35 243.8 -6.1 191 23-221 15-209 (229)
76 3f6q_A Integrin-linked protein 99.9 2.7E-27 9.2E-32 212.3 15.8 168 27-199 3-170 (179)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.9E-27 2.3E-31 204.5 17.0 153 64-221 2-154 (156)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-27 4.4E-32 225.0 7.1 178 62-245 3-192 (239)
79 2aja_A Ankyrin repeat family p 99.9 1.5E-28 5.1E-33 245.8 0.4 227 22-267 85-348 (376)
80 1d9s_A Cyclin-dependent kinase 99.9 5.6E-25 1.9E-29 187.9 11.3 132 20-156 3-135 (136)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 6E-25 2.1E-29 192.4 11.2 142 95-241 9-151 (156)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-24 3.8E-29 190.7 11.4 143 23-171 6-149 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 2.4E-24 8.4E-29 184.0 12.4 132 56-191 4-136 (136)
84 3t8k_A Uncharacterized protein 99.9 6E-25 2E-29 198.3 8.6 155 29-190 6-178 (186)
85 2aja_A Ankyrin repeat family p 99.9 5.4E-26 1.9E-30 227.2 0.7 195 30-247 66-267 (376)
86 3t8k_A Uncharacterized protein 99.9 1.7E-24 5.7E-29 195.4 9.6 146 100-250 8-170 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9E-23 3.1E-27 170.9 16.0 125 28-156 1-125 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-22 4.3E-27 170.0 16.0 126 63-191 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 4.8E-23 1.6E-27 175.9 13.4 123 28-154 13-135 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1E-22 3.4E-27 173.9 14.0 126 61-189 11-136 (136)
91 3ui2_A Signal recognition part 99.9 4.1E-23 1.4E-27 194.7 9.4 111 27-141 43-153 (244)
92 3deo_A Signal recognition part 99.9 5.4E-23 1.9E-27 185.0 9.7 142 25-188 40-181 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 5.7E-23 1.9E-27 175.5 7.9 127 24-154 5-131 (137)
94 3deo_A Signal recognition part 99.9 3.2E-22 1.1E-26 179.9 10.6 163 37-221 8-180 (183)
95 3ui2_A Signal recognition part 99.9 2.7E-22 9.2E-27 189.1 10.4 167 28-221 14-181 (244)
96 3c5r_A BARD-1, BRCA1-associate 99.9 2.5E-22 8.6E-27 171.5 8.7 111 129-242 7-117 (137)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-21 3.9E-26 190.6 13.9 139 98-246 151-298 (301)
98 3ehr_A Osteoclast-stimulating 99.9 3.8E-22 1.3E-26 185.0 8.7 132 22-157 66-198 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 1.2E-21 4.1E-26 164.0 9.5 110 26-139 4-113 (123)
100 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-21 4.4E-26 190.2 11.1 145 60-213 147-299 (301)
101 3ehr_A Osteoclast-stimulating 99.9 8.2E-22 2.8E-26 182.8 8.8 134 97-234 72-206 (222)
102 3aaa_C Myotrophin, protein V-1 99.8 5E-21 1.7E-25 160.2 11.8 111 129-242 4-114 (123)
103 1dcq_A PYK2-associated protein 99.8 7.2E-21 2.5E-25 182.8 13.8 120 100-221 132-259 (278)
104 1dcq_A PYK2-associated protein 99.8 3.2E-20 1.1E-24 178.3 15.5 196 59-264 61-264 (278)
105 3jue_A Arfgap with coiled-coil 99.8 1.6E-19 5.5E-24 179.7 12.7 147 61-210 196-347 (368)
106 3jue_A Arfgap with coiled-coil 99.8 2.9E-19 9.8E-24 177.9 13.7 149 94-245 195-348 (368)
107 2l6b_A NR1C; ankyrin, consensu 99.8 1.6E-19 5.5E-24 149.0 9.2 109 127-238 4-112 (115)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4.6E-19 1.6E-23 140.4 11.5 91 132-225 2-92 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.8 6.1E-19 2.1E-23 183.6 15.8 130 100-233 134-272 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.7E-19 2.3E-23 139.5 12.3 91 28-121 1-91 (93)
111 3lvq_E ARF-GAP with SH3 domain 99.8 4.4E-19 1.5E-23 184.6 13.6 137 64-209 132-276 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 8.5E-19 2.9E-23 144.6 10.2 108 24-135 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 5.4E-17 1.9E-21 132.8 9.6 96 19-117 14-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.2E-16 7.7E-21 129.1 9.7 93 125-219 17-109 (110)
115 2l2t_A Receptor tyrosine-prote 56.2 2.8 9.4E-05 26.8 0.3 27 425-451 8-34 (44)
116 2ks1_B Epidermal growth factor 53.5 2 6.9E-05 27.5 -0.6 27 425-451 9-35 (44)
117 4ev6_A Magnesium transport pro 44.1 19 0.00065 34.3 4.3 23 396-418 278-300 (339)
118 2iub_A CORA, divalent cation t 35.0 25 0.00087 33.8 3.6 23 395-417 301-323 (363)
119 3gvo_A Pumilio 2, pumilio homo 26.8 23 0.00079 33.8 1.7 161 59-221 68-238 (351)
120 4a01_A Proton pyrophosphatase; 24.2 1.3E+02 0.0045 31.5 6.7 73 393-467 357-441 (766)
121 2l8s_A Integrin alpha-1; trans 20.2 83 0.0028 20.9 2.8 25 424-448 7-31 (54)
122 2iub_A CORA, divalent cation t 20.1 1.3E+02 0.0044 28.7 5.6 42 316-360 300-341 (363)
No 1
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.7e-40 Score=307.51 Aligned_cols=233 Identities=25% Similarity=0.335 Sum_probs=216.9
Q ss_pred hhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183 21 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 100 (491)
Q Consensus 21 ~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t 100 (491)
+++..|.+|.||||+|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.|
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 79 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGST 79 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCc
Confidence 4678899999999999999999999999998876 6778889999999999999999999999999987 678889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHH
Q 011183 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180 (491)
Q Consensus 101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~ 180 (491)
|||+|+..|+.+++++|++.++.+.+..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999999977888899999999999999999999999999999987 778999999999999999999
Q ss_pred HHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259 (491)
Q Consensus 181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~ 259 (491)
++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|+||+|+|+..++.....++.+.+.+
T Consensus 159 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 159 IAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999998 78899999999999999999999999999 7999999999999999999998876666666666554
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3e-40 Score=314.09 Aligned_cols=230 Identities=22% Similarity=0.258 Sum_probs=180.8
Q ss_pred hhhccCCCCCCHHHHHHHcC-------------CHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183 21 VVNEVNELGETALFTAADKG-------------HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87 (491)
Q Consensus 21 ~l~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~ 87 (491)
++|.+|.+|.||||+|+..| +.++++.|++.+.+.. ...|..|.||||+|+..|+.+++++|+++|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 57889999999999999987 8999999999887642 456889999999999999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC
Q 011183 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 167 (491)
Q Consensus 88 ~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~ 167 (491)
+++ +..|..|.||||+|+..|+.+++++|++.++.+++..+.+|.||||+|+..|+.+++++|++.+.++ +..|..|+
T Consensus 81 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~ 158 (253)
T 1yyh_A 81 ADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGK 158 (253)
T ss_dssp CCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSC
T ss_pred CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCC
Confidence 997 6788999999999999999999999999977688899999999999999999999999999999987 77899999
Q ss_pred CHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183 168 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 247 (491)
Q Consensus 168 t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~ 247 (491)
||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...++.
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCH
Confidence 999999999999999999999999 78899999999999999999999999999 7999999999999999999998876
Q ss_pred hhhHHHHHHHHH
Q 011183 248 EEASEIKDCLAR 259 (491)
Q Consensus 248 ~~~~~i~~~L~~ 259 (491)
+ +.++|..
T Consensus 237 ~----i~~~l~~ 244 (253)
T 1yyh_A 237 D----IVRLLDL 244 (253)
T ss_dssp H----HHHHHHC
T ss_pred H----HHHHHHH
Confidence 5 5555544
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-39 Score=313.34 Aligned_cols=221 Identities=24% Similarity=0.250 Sum_probs=188.7
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 100 (491)
Q Consensus 22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t 100 (491)
++.+|.+|+||||+|+..|+.++|++|++.+.+.. ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 57889999999999999999999999999887643 6778999999999999999999999999999998 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCC----------------------------------------------cccccCCCCCc
Q 011183 101 PLVSAATRGHTAVVNELLSKDGG----------------------------------------------LLEISRSNGKN 134 (491)
Q Consensus 101 pL~~A~~~g~~~~v~~LL~~~~~----------------------------------------------~~~~~d~~g~t 134 (491)
|||+|+..|+.+++++|++.+.. .++..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 99999999999999999986432 24567889999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHH
Q 011183 135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214 (491)
Q Consensus 135 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~ 214 (491)
|||+|+..|+.+++++|+++++++....+..|+||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcH
Confidence 999999999999999999999998443335699999999999999999999999998 7889999999999999999999
Q ss_pred HHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183 215 IVTELLSLPDTNVNALTRDHKTALDIAEGLP 245 (491)
Q Consensus 215 iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~ 245 (491)
++++|++ .|++++.+|..|.||+++|....
T Consensus 240 ~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 240 LARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHH-TTCCCCCCC--------------
T ss_pred HHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 9999999 89999999999999999987654
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.5e-39 Score=303.50 Aligned_cols=229 Identities=24% Similarity=0.292 Sum_probs=201.1
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHh----ccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 22 VNEVNELGETALFTAADKGHIEVVNELLK----YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
++.+|.+|+||||+|+..|+.+++++|++ .+. +++..|..|.||||+|+..|+.+++++|+++|+++ +..+..
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 78 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRH 78 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCC
Confidence 57789999999999999999999999997 343 36788999999999999999999999999999997 677899
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC-CCCCCHHHHH
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD-KKGQTALHMA 173 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A 173 (491)
|.||||+|+..|+.+++++|++.+.. ..+..|..|.||||+|+..|+.+++++|+++++++ +..+ ..|.||||+|
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA 157 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence 99999999999999999999998642 67788899999999999999999999999999998 4445 8899999999
Q ss_pred HhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHH
Q 011183 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 253 (491)
Q Consensus 174 a~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i 253 (491)
++.|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...+ ..++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~----~~~i 231 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRR----VIDI 231 (241)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHH----HHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcC----cHHH
Confidence 999999999999999999 78899999999999999999999999999 89999999999999999998753 3345
Q ss_pred HHHHHHc
Q 011183 254 KDCLARC 260 (491)
Q Consensus 254 ~~~L~~~ 260 (491)
++.|.+.
T Consensus 232 ~~~l~~~ 238 (241)
T 1k1a_A 232 LRGKATR 238 (241)
T ss_dssp HTC----
T ss_pred HhhhccC
Confidence 5554443
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-38 Score=300.65 Aligned_cols=248 Identities=27% Similarity=0.357 Sum_probs=220.0
Q ss_pred hhhHHHHHhhchhhhhcc-CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183 8 AEFDTEVAEIRSSVVNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86 (491)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 86 (491)
.+....+++ .+.+++.. +..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++
T Consensus 18 ~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 18 VDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 345555555 45677777 88899999999999999999999998876 567888999999999999999999999999
Q ss_pred CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccc----------CCCCCcHHHHHHHcCCHHHHHHHHhC-C
Q 011183 87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS----------RSNGKNALHFAARQGHVDVVKALLSK-D 155 (491)
Q Consensus 87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~iv~~Ll~~-~ 155 (491)
|+++ +..|..|.||||+|+..|+.+++++|++.+ ..++.. +..|.||||.|+..|+.+++++|++. +
T Consensus 95 g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 172 (285)
T 1wdy_A 95 GADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172 (285)
T ss_dssp TCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC
T ss_pred CCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcC
Confidence 9997 678899999999999999999999999884 444444 77899999999999999999999998 6
Q ss_pred cccccccCCCCCCHHHHHHhCCC----HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccccc
Q 011183 156 PQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 231 (491)
Q Consensus 156 ~~~~~~~d~~g~t~Lh~Aa~~~~----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d 231 (491)
.++ +..|..|+||||.|+..++ .+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++..|++++.+|
T Consensus 173 ~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~ 250 (285)
T 1wdy_A 173 ADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250 (285)
T ss_dssp CCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred CCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC
Confidence 665 7789999999999999999 8999999999998 788999999999999999999999999997899999999
Q ss_pred CCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccc
Q 011183 232 RDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN 266 (491)
Q Consensus 232 ~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~ 266 (491)
..|+||||+|+..++. +++++|+++|+....
T Consensus 251 ~~g~t~l~~A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 251 SDGKTALLLAVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp TTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred CCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCc
Confidence 9999999999998764 488999999987643
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=300.45 Aligned_cols=220 Identities=24% Similarity=0.304 Sum_probs=198.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
+|+||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC--SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence 689999999999999999999998766 6788999999999999999999999999999997 6788999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183 108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~ 187 (491)
.|+.+++++|++.+. +.+ .+.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGA-SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTC-CSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCC-CCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999854 444 3566999999999999999999999999987 7789999999999999999999999999
Q ss_pred cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 011183 188 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262 (491)
Q Consensus 188 ~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga 262 (491)
.|++ ++. |..|+||||+|+..++.+++++|++ .|+|++.+|.+|+||+|+|...+ .+.+.|.+.+.
T Consensus 156 ~g~~-~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~------~~~~~ll~~~~ 221 (261)
T 2xai_A 156 SGAD-VNQ-GKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES------PLAQLFLEREG 221 (261)
T ss_dssp HTCC-TTC-CBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC------THHHHHHHC-C
T ss_pred cCCC-CCC-CCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc------cHHHHHHhccC
Confidence 9998 554 8899999999999999999999999 79999999999999999998543 26677777654
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-38 Score=303.22 Aligned_cols=228 Identities=25% Similarity=0.296 Sum_probs=205.6
Q ss_pred hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 011183 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA 99 (491)
Q Consensus 20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~ 99 (491)
..++..|.+|+||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.
T Consensus 50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~ 126 (285)
T 3d9h_A 50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWH 126 (285)
T ss_dssp CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCC
T ss_pred CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence 34678899999999999999999999999998766 6788999999999999999999999999999997 67889999
Q ss_pred CHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179 (491)
Q Consensus 100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~ 179 (491)
||||+|+..|+.+++++|++.+. +++. +.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~ 203 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGA-SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQR 203 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTC-CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence 99999999999999999999844 4443 456999999999999999999999999987 77899999999999999999
Q ss_pred HHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183 180 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259 (491)
Q Consensus 180 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~ 259 (491)
+++++|++.|++ ++ .|..|+||||+|+..++.+++++|++ .|++++.+|.+|+||+|+|... .++.++|++
T Consensus 204 ~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~------~~~~~~Ll~ 274 (285)
T 3d9h_A 204 ACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPE------SPLAQLFLE 274 (285)
T ss_dssp HHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT------SHHHHHHHH
T ss_pred HHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCc------cHHHHHHHH
Confidence 999999999998 55 48899999999999999999999999 7999999999999999999842 246777777
Q ss_pred c-Cc
Q 011183 260 C-GA 262 (491)
Q Consensus 260 ~-ga 262 (491)
. |+
T Consensus 275 ~~~a 278 (285)
T 3d9h_A 275 REGA 278 (285)
T ss_dssp HC--
T ss_pred hhcc
Confidence 6 44
No 8
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-37 Score=316.41 Aligned_cols=263 Identities=29% Similarity=0.379 Sum_probs=144.5
Q ss_pred chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
.+.+++..|..|.||||+|+..|+.+++++|++.+.+ ....+..|.||||+|+..|+.+++++|+++++++ +..+..
T Consensus 102 ~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~ 178 (437)
T 1n11_A 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS--QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 178 (437)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC
Confidence 3555555666666666666666666666666655433 2334444555555555555555555555555544 334444
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcC--------------------------------CCcccccCCCCCcHHHHHHHcCCH
Q 011183 98 NATPLVSAATRGHTAVVNELLSKD--------------------------------GGLLEISRSNGKNALHFAARQGHV 145 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~--------------------------------~~~~~~~d~~g~tpLh~A~~~g~~ 145 (491)
|.||||+|+..|+.+++++|++++ +.+.+..+..|.||||+|+..|+.
T Consensus 179 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 258 (437)
T 1n11_A 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 555555555555555555554442 223444455555555555555555
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183 146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225 (491)
Q Consensus 146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~ 225 (491)
+++++|++++++. +..|..|.||||+|++.|+.+++++|+++|.+ ++.+|..|+||||+|+..|+.+++++|++ .|+
T Consensus 259 ~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga 335 (437)
T 1n11_A 259 EMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQA 335 (437)
T ss_dssp HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTC
T ss_pred HHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCC
Confidence 5555555555554 44455556666666666666666666666555 45556666666666666666666666666 466
Q ss_pred CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhh
Q 011183 226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL 290 (491)
Q Consensus 226 ~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 290 (491)
+++.+|..|+||||+|+..++. +++++|+++|+........+.+++..+......++.+.+
T Consensus 336 d~n~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 336 DVNAKTKLGYSPLHQAAQQGHT----DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHCChH----HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 6666666666666666665443 355666666665555545555555554444433333333
No 9
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-37 Score=290.77 Aligned_cols=214 Identities=25% Similarity=0.256 Sum_probs=195.4
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC--CCCcccCCCCCCCHHHHHH
Q 011183 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAA 106 (491)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~l~~~~~~~g~tpL~~A~ 106 (491)
|+||||.|+..|+.++++.|++.+.+. ....|..|.||||+|+..|+.+++++|++++ +++....+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 789999999999999999999987653 3558899999999999999999999999999 6654447889999999999
Q ss_pred HcCCHHHHHHHHhcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183 107 TRGHTAVVNELLSKD-GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185 (491)
Q Consensus 107 ~~g~~~~v~~LL~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L 185 (491)
..|+.+++++|++.+ +.+++..+.+|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999985 2667888999999999999999999999999999987 77899999999999999999999999
Q ss_pred HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 011183 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244 (491)
Q Consensus 186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~ 244 (491)
++.|+..++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|+||+|+|...
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 99994448899999999999999999999999999438999999999999999999753
No 10
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=7.8e-38 Score=292.63 Aligned_cols=227 Identities=26% Similarity=0.332 Sum_probs=208.3
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
+..++||||.|+..|+.+.++.|++.+.. ..+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 56789999999999999999999997644 35778999999999999999999999999999987 67889999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L 185 (491)
+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 81 ASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 999999999999998 5667888999999999999999999999999999987 77899999999999999999999999
Q ss_pred HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 011183 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262 (491)
Q Consensus 186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga 262 (491)
++.|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||+|+|... ...++.++|.++|+
T Consensus 159 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~lL~~~~a 229 (231)
T 3aji_A 159 LFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGG----LGLILKRLAEGEEA 229 (231)
T ss_dssp HHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHH----HHHHHHHHHHHHHH
T ss_pred HhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhh----HHHHHHHHHccccc
Confidence 999998 78899999999999999999999999999 7999999999999999999764 34557777777665
No 11
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-37 Score=317.28 Aligned_cols=264 Identities=31% Similarity=0.366 Sum_probs=215.2
Q ss_pred chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
++..++..+..|.||||+|+..|+.++|++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++++++ +..+..
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~ 79 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKD 79 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTT
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC
Confidence 4667888899999999999999999999999998766 5667888999999999999999999999999887 677888
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCC
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~ 177 (491)
|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.++++.|++++.+. ...+..|.||||+|+..|
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcC
Confidence 99999999999999999999987 5667888889999999999999999999999988876 567888999999999999
Q ss_pred CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHH
Q 011183 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL 257 (491)
Q Consensus 178 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L 257 (491)
+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++. ++.+.|
T Consensus 158 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~L 231 (437)
T 1n11_A 158 KVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQV----EVARSL 231 (437)
T ss_dssp CHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCH----HHHHHH
T ss_pred CHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHH
Confidence 99999999999888 77888899999999999999999999998 7888998999999999999887664 477888
Q ss_pred HHcCccccccCCCchHHHHHHHHHhhhhhhhhhHH
Q 011183 258 ARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ 292 (491)
Q Consensus 258 ~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 292 (491)
++.|+..+.....+.+++..+......++.+.|.+
T Consensus 232 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 266 (437)
T 1n11_A 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266 (437)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 88888776666667777777776666666555543
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.2e-37 Score=306.21 Aligned_cols=256 Identities=26% Similarity=0.266 Sum_probs=132.9
Q ss_pred HHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc
Q 011183 12 TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 91 (491)
Q Consensus 12 ~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~ 91 (491)
..++...+.+++..|..|.||||+|+..|+.++|++|++.|.+ ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 41 ~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~- 117 (351)
T 3utm_A 41 MALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV- 117 (351)
T ss_dssp HHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-
Confidence 3344444445555555555555555555555555555554433 3444555555555555555555555555555554
Q ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH---------------------HHcCCHHHHHH
Q 011183 92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA---------------------ARQGHVDVVKA 150 (491)
Q Consensus 92 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A---------------------~~~g~~~iv~~ 150 (491)
+..|..|.||||+|+..|+.+++++|++. +.+++..+..|.+|+|.| +..++.+.++.
T Consensus 118 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (351)
T 3utm_A 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196 (351)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence 34445555555555555555555555554 222332222222222211 11111111111
Q ss_pred HHhCCcccccccCCCCCCHHHHHHhC---CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183 151 LLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 227 (491)
Q Consensus 151 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~---~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~ 227 (491)
++...... ...+..|.||||+|+.. +..+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|+++
T Consensus 197 ~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~ 273 (351)
T 3utm_A 197 TLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKM 273 (351)
T ss_dssp HTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred HHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCC
Confidence 11111111 12344566666666666 445666666666666 55666666666666666666666666666 56666
Q ss_pred ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHH
Q 011183 228 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKT 278 (491)
Q Consensus 228 ~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~ 278 (491)
+.+|..|+||||+|+..++. +++++|+++|+........+.++++..
T Consensus 274 n~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 274 NALDSLGQTALHRAALAGHL----QTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp TCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred CCcCCCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 66666666666666665443 366666666666555555555555544
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.9e-38 Score=316.59 Aligned_cols=238 Identities=21% Similarity=0.243 Sum_probs=208.1
Q ss_pred hhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 011183 16 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 95 (491)
Q Consensus 16 ~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~ 95 (491)
..++.+.+..|.+|.||||+|+..|+.++|++|++.|.+ ++..|..|.||||+|+..|+.+++++|++++++.. +
T Consensus 7 ~~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~ 81 (364)
T 3ljn_A 7 DFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---L 81 (364)
T ss_dssp ---------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---C
T ss_pred hccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---c
Confidence 345667888999999999999999999999999998866 67889999999999999999999999999998652 3
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcC---CCcccc-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 011183 96 PSNATPLVSAATRGHTAVVNELLSKD---GGLLEI-----------------SRSNGKNALHFAARQG--HVDVVKALLS 153 (491)
Q Consensus 96 ~~g~tpL~~A~~~g~~~~v~~LL~~~---~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~ 153 (491)
.+|.||||+|+..|+.+++++|++.. +...+. .|.+|.||||+|+..| +.+++++|++
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~ 161 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 57999999999999999999999872 233333 7788999999999999 9999999999
Q ss_pred CCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCccc----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccc
Q 011183 154 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229 (491)
Q Consensus 154 ~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~----~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~ 229 (491)
++.++ +..|..|+||||+|+..|+.+++++|++.+++. ++.+|..|+||||+|+..|+.+++++|++ .|++++.
T Consensus 162 ~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~ 239 (364)
T 3ljn_A 162 LGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNM 239 (364)
T ss_dssp HTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTC
T ss_pred cCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCC
Confidence 99987 778999999999999999999999999998873 67889999999999999999999999999 8999999
Q ss_pred ccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183 230 LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 264 (491)
Q Consensus 230 ~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 264 (491)
+|..|.||||+|+..++.+ ++++|++.|+..
T Consensus 240 ~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 240 EDNEHTVPLYLSVRAAMVL----LTKELLQKTDVF 270 (364)
T ss_dssp CCTTSCCHHHHHHHTCCHH----HHHHHHHHSCHH
T ss_pred CCCCCCCHHHHHHHhChHH----HHHHHHHcCCch
Confidence 9999999999999987654 788888887653
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-36 Score=292.61 Aligned_cols=255 Identities=25% Similarity=0.269 Sum_probs=227.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 106 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 106 (491)
+|.||||.|++.|+.+++++|++.+.+ ++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 578999999999999999999998866 4444 778999999999999999999999999997 678899999999999
Q ss_pred HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccccc----------CCCCCCHHHHHHhC
Q 011183 107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT----------DKKGQTALHMAVKG 176 (491)
Q Consensus 107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~----------d~~g~t~Lh~Aa~~ 176 (491)
..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++++.++ +.. +..|.||||.|+..
T Consensus 81 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 81 IAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHc-CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHc
Confidence 99999999999998 5668889999999999999999999999999999887 333 78899999999999
Q ss_pred CCHHHHHHHHhc-CcccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhH
Q 011183 177 QSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251 (491)
Q Consensus 177 ~~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~~~----~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~ 251 (491)
|+.+++++|++. +.+ ++..|..|+||||.|+..++ .+++++|++ .|++++.+|..|.||||+|+..++.+
T Consensus 159 ~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~--- 233 (285)
T 1wdy_A 159 GHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG--- 233 (285)
T ss_dssp TCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHH---
T ss_pred CCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHH---
Confidence 999999999998 776 78899999999999999999 999999999 89999999999999999999987654
Q ss_pred HHHHHHHH-cCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183 252 EIKDCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 293 (491)
Q Consensus 252 ~i~~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 293 (491)
+++.|++ .|+..+.....+.+++..+......++.+.|.+.
T Consensus 234 -~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 234 -LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp -HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence 7777887 8888777777788888888777666666665543
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=302.99 Aligned_cols=217 Identities=27% Similarity=0.365 Sum_probs=173.0
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc------ccccCCCCCChHHHHHHHcCcH-HHHHHHHhcCCCCcccCCC
Q 011183 24 EVNELGETALFTAADKGHIEVVNELLKYSTKE------GLTRKNRSGFDPLHIAAVQGHH-AIVQVLLDHDPSLSQTTGP 96 (491)
Q Consensus 24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~------~l~~~~~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~l~~~~~~ 96 (491)
..|.++.|||+.||..|+.++|++||+.+.+. .++..+..|.||||.|+..++. .+++.|++.|+++ +..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence 35777889999999999999999999987643 2456778899999999988876 4889999999998 78899
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhC
Q 011183 97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 176 (491)
Q Consensus 97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~ 176 (491)
+|+||||+|+..|+.+++++|++. +.+++..+.+|.||+|.|+..++.++++.|++.++++ +..|..|+||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence 999999999999999999999988 5678889999999999999999999999999999997 77899999999999999
Q ss_pred CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183 177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP 245 (491)
Q Consensus 177 ~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~ 245 (491)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|++.+
T Consensus 163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence 999999999999999 88999999999999999999999999999 79999999999999999997643
No 16
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-37 Score=313.54 Aligned_cols=237 Identities=23% Similarity=0.291 Sum_probs=199.1
Q ss_pred hhhhhccC-CCCCCHHHHHHHcCCHHHHHHHH--------hccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 011183 19 SSVVNEVN-ELGETALFTAADKGHIEVVNELL--------KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89 (491)
Q Consensus 19 ~~~l~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 89 (491)
...+|..| ..|.||||+|+..|+.+++++|+ +.|.+ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~--vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 191 (373)
T 2fo1_E 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD--VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191 (373)
T ss_dssp TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC--CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence 35677788 68999999999999988887776 55555 677888899999999999999999999999988
Q ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC--CcccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCccccc----
Q 011183 90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAARQG---HVDVVKALLSKDPQLAR---- 160 (491)
Q Consensus 90 l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~---- 160 (491)
+ +..|..|.||||+|+..|+.+++++|++.+. .+++..|.+|.||||+|+..| +.+++++|++++.++..
T Consensus 192 ~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~ 270 (373)
T 2fo1_E 192 P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270 (373)
T ss_dssp S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred C-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence 7 6778889999999999999999999998742 466778889999999999887 88999999998887632
Q ss_pred ---ccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH
Q 011183 161 ---RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237 (491)
Q Consensus 161 ---~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~ 237 (491)
..|..|+||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTA 349 (373)
T ss_dssp GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCH
T ss_pred ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCH
Confidence 2567899999999999999999999988733388889999999999999999999999998 799999999999999
Q ss_pred HHHHhhCCCchhhHHHHHHHHHcCcc
Q 011183 238 LDIAEGLPSSEEASEIKDCLARCGAV 263 (491)
Q Consensus 238 L~~A~~~~~~~~~~~i~~~L~~~ga~ 263 (491)
||+|+..++.+ ++++|.++++.
T Consensus 350 l~~A~~~g~~~----iv~~Ll~~~a~ 371 (373)
T 2fo1_E 350 RQLAQANNHHN----IVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHTTCHH----HHHHHHTTC--
T ss_pred HHHHHHcCCHH----HHHHHHhcCcc
Confidence 99999877644 77888887764
No 17
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.1e-36 Score=298.56 Aligned_cols=261 Identities=26% Similarity=0.319 Sum_probs=155.0
Q ss_pred hhhhhccCCC-CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 19 SSVVNEVNEL-GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 19 ~~~l~~~~~~-g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
++++|.++.+ |.||||+|+..|+.++|++|+++|++ ++..+..+.+|++.++..++..++..+++.++++ +..|..
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~ 124 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFY 124 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTT
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc--hhhhccCCCchhHHHHhcccchhhHHhhhccchh-hhhccC
Confidence 4455544432 55555555555555555555554443 1222333333333333333333333333333333 445667
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCc---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCC
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQ 167 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~ 167 (491)
|.||||+|+..|+.+++++|++.+... ....+..|.||||+|+..|+.+++++|+++ +.++ +..|..|.
T Consensus 125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~ 203 (337)
T 4g8k_A 125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGR 203 (337)
T ss_dssp CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCC
Confidence 777777777777777777777663221 123345677777777777777777777753 5554 66677777
Q ss_pred CHHHHHHhCCC----HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183 168 TALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 243 (491)
Q Consensus 168 t~Lh~Aa~~~~----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~ 243 (491)
|+||.++..+. .+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|++..|++++.+|.+|+||||+|+.
T Consensus 204 t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~ 282 (337)
T 4g8k_A 204 NALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 282 (337)
T ss_dssp CHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHH
T ss_pred cHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHH
Confidence 77776664332 3466777777777 667777777777777777777777777776677777777777777777777
Q ss_pred CCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183 244 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 293 (491)
Q Consensus 244 ~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 293 (491)
.++. +++++|+++|+..+... ++..+......++.+.|.+.
T Consensus 283 ~g~~----~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 283 LKLK----KIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp TTCH----HHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHHT
T ss_pred cCCH----HHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHHC
Confidence 6553 36677777777654332 45555555555555555543
No 18
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.5e-37 Score=303.97 Aligned_cols=267 Identities=25% Similarity=0.263 Sum_probs=232.6
Q ss_pred chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
+....+..+..|.|+||.|++.|+.+.++.|+... +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..
T Consensus 13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~ 90 (351)
T 3utm_A 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKG 90 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CceeeeeeccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence 45566677888999999999999999999999852 3446788999999999999999999999999999997 678899
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHH---
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV--- 174 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa--- 174 (491)
|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..+..|.||+|+|+
T Consensus 91 g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 91 GLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence 99999999999999999999998 6678889999999999999999999999999999987 778999999988764
Q ss_pred ------------------hCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc---CcHHHHHHHhcCCCCCcccccCC
Q 011183 175 ------------------KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRD 233 (491)
Q Consensus 175 ------------------~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~---~~~~iv~~Ll~~~g~~~~~~d~~ 233 (491)
..++.+.++.++..... ....+..|.||||+|+.. ++.+++++|++ .|++++.+|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~ 246 (351)
T 3utm_A 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKD 246 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTT
T ss_pred hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCC
Confidence 45666666666666544 445678899999999999 66899999999 89999999999
Q ss_pred CCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHhh
Q 011183 234 HKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR 294 (491)
Q Consensus 234 G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 294 (491)
|.||||+|+..++. ++++.|++.|+..+.....+.+++..+......++.+.|.+.+
T Consensus 247 g~t~L~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 303 (351)
T 3utm_A 247 FMTPLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303 (351)
T ss_dssp CCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999998765 4888999999998877778888999998888888877776653
No 19
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=285.22 Aligned_cols=233 Identities=26% Similarity=0.364 Sum_probs=210.7
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCH
Q 011183 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 101 (491)
Q Consensus 22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp 101 (491)
++..|..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++++.....+..|.||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence 466799999999999999999999999998866 677889999999999999999999999999999877777789999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC-HH
Q 011183 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-CE 180 (491)
Q Consensus 102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~-~~ 180 (491)
||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++++.++ +..|..|.||||+|+..++ .+
T Consensus 80 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSST
T ss_pred hHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHH
Confidence 9999999999999999988 6667888999999999999999999999999999987 7789999999999996555 89
Q ss_pred HHHHHHhcCcccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183 181 VVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259 (491)
Q Consensus 181 iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~ 259 (491)
++++|++.+++ ++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||+|+|...++.+ +++.|.+
T Consensus 158 ~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L~~ 231 (240)
T 3eu9_A 158 PTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVW----MINHLQE 231 (240)
T ss_dssp THHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHH
Confidence 99999999999 666665 89999999999999999999999 79999999999999999999987655 7777777
Q ss_pred cCccc
Q 011183 260 CGAVR 264 (491)
Q Consensus 260 ~ga~~ 264 (491)
.++..
T Consensus 232 ~~~~~ 236 (240)
T 3eu9_A 232 ARQAK 236 (240)
T ss_dssp HC---
T ss_pred hhhcc
Confidence 76643
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.8e-36 Score=295.69 Aligned_cols=259 Identities=25% Similarity=0.270 Sum_probs=222.7
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 104 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 104 (491)
+.+|+||||.||+.|++++|++||+.|++ ++..+ ..|.||||+|+..|+.++|++|+++|+++ +..+..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHH
Confidence 33578999999999999999999999877 45555 45999999999999999999999999998 6788999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccc---------cccCCCCCCHHHHHHh
Q 011183 105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA---------RRTDKKGQTALHMAVK 175 (491)
Q Consensus 105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~ 175 (491)
++..++.+++..+++. +.+++..|..|.||||+|+..|+.+++++|+++++++. ...+..|.||||+|++
T Consensus 99 ~~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHTCHHHHHHHHTT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHhcccchhhHHhhhc-cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence 9999999999999987 56788899999999999999999999999999987653 2345679999999999
Q ss_pred CCCHHHHHHHHhc-CcccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhh
Q 011183 176 GQSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEA 250 (491)
Q Consensus 176 ~~~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~~~----~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~ 250 (491)
.|+.+++++|++. |++ ++.+|..|.||||.++..+. ..++++|++ .|+++|.+|..|+||||+|+..+..+
T Consensus 178 ~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~-- 253 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG-- 253 (337)
T ss_dssp HTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHH--
T ss_pred CCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhH--
Confidence 9999999999965 777 88999999999999886543 467888888 89999999999999999999987654
Q ss_pred HHHHHHHHH-cCccccccCCCchHHHHHHHHHhhhhhhhhhHHhh
Q 011183 251 SEIKDCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR 294 (491)
Q Consensus 251 ~~i~~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 294 (491)
+++.|+. .|+..+.....+++++..+......++.+.|.+.+
T Consensus 254 --~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 254 --LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp --HHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred --HHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 5555665 46777667777888999998888888887776543
No 21
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=289.71 Aligned_cols=244 Identities=19% Similarity=0.231 Sum_probs=192.3
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhccCc---------cccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 011183 25 VNELGETALFTAADKGHIEVVNELLKYSTK---------EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 95 (491)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~---------~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~ 95 (491)
-...|.|+||+|+..|+.+.+..++..+.. ..+...|..|.||||+|+..|+.+++++|+++++++ +..|
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence 356799999999999998877777654321 225668889999999999999999999999999997 6788
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183 96 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175 (491)
Q Consensus 96 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~ 175 (491)
..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++. .+..|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence 9999999999999999999999998 67788899999999999999999999999999998873 34569999999999
Q ss_pred CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 011183 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD 255 (491)
Q Consensus 176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~ 255 (491)
.|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++ .|++++. |..|.||||+|+..++. ++++
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~ 239 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASE----ELAC 239 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCH----HHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCH----HHHH
Confidence 9999999999999998 78899999999999999999999999999 7999995 89999999999998765 4888
Q ss_pred HHHHcCccccccCCCchHHHHHHH
Q 011183 256 CLARCGAVRANELNQPRDELRKTV 279 (491)
Q Consensus 256 ~L~~~ga~~~~~~~~~~~~l~~~~ 279 (491)
+|++.|+........+.+++..+.
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHCCCCCCCcCCCCCCHHHHhc
Confidence 999999987766666666665443
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=289.20 Aligned_cols=233 Identities=22% Similarity=0.247 Sum_probs=206.1
Q ss_pred hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183 8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87 (491)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~ 87 (491)
.+....+++ .+.++|.+|.+|.||||+|+..|+.+++++|++.|.+ ++..|..|.||||+|+..|+.+++++|++++
T Consensus 16 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (261)
T 2xai_A 16 QLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92 (261)
T ss_dssp HHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 344555554 5788999999999999999999999999999998866 6778999999999999999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC
Q 011183 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 167 (491)
Q Consensus 88 ~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~ 167 (491)
+++. .+..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++. .|..|+
T Consensus 93 ~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~ 167 (261)
T 2xai_A 93 ASVQ--PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQD 167 (261)
T ss_dssp CCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTB
T ss_pred CCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCC
Confidence 9974 345699999999999999999999998 56788899999999999999999999999999999884 388999
Q ss_pred CHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC-------CCcccccCCCCCHHHH
Q 011183 168 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD-------TNVNALTRDHKTALDI 240 (491)
Q Consensus 168 t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g-------~~~~~~d~~G~t~L~~ 240 (491)
||||+|++.++.+++++|++.|++ ++.+|.+|+||||+|+..+ ++++.|++..+ ++++.+|..|+||+|.
T Consensus 168 t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~ 244 (261)
T 2xai_A 168 SPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHK 244 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGG
T ss_pred ChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhcccc
Confidence 999999999999999999999999 8899999999999999665 48888888432 3567889999999999
Q ss_pred HhhCCCchhhH
Q 011183 241 AEGLPSSEEAS 251 (491)
Q Consensus 241 A~~~~~~~~~~ 251 (491)
+.+...++...
T Consensus 245 ~~~~~~p~~l~ 255 (261)
T 2xai_A 245 ITKLVLPEDLK 255 (261)
T ss_dssp GGGSSSCHHHH
T ss_pred CcccCCcHHHH
Confidence 99887665433
No 23
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.5e-36 Score=277.61 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=143.4
Q ss_pred CCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 011183 40 GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119 (491)
Q Consensus 40 g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~ 119 (491)
|+.+++++|++.+.+.+ ...|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcc-cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 55666666666655421 233566777777777777777777777776665 4556667777777777777777777776
Q ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCC
Q 011183 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199 (491)
Q Consensus 120 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~ 199 (491)
.++...+..+..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 655556666667777777777777777777777766665 55566677777777777777777777777666 5666677
Q ss_pred CChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 264 (491)
Q Consensus 200 G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 264 (491)
|.||||+|+..++.+++++|++ .|++++.+|..|.||+|+|...++. +++++|.++|+..
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLVR 217 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCSS
T ss_pred CcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCCc
Confidence 7777777777777777777776 5677777777777777777665543 3666666666654
No 24
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-36 Score=306.01 Aligned_cols=261 Identities=20% Similarity=0.209 Sum_probs=220.8
Q ss_pred hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcHHHHHHHH--------hcCCCC
Q 011183 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLL--------DHDPSL 90 (491)
Q Consensus 20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~l 90 (491)
...+..|..|.||||.|+..|+ ++++.|+.. .++..| ..|.||||+|+..|+.+++++|+ +.|+++
T Consensus 85 ~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~----~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v 159 (373)
T 2fo1_E 85 QIPTEPEPESPIKLHTEAAGSY-AITEPITRE----SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159 (373)
T ss_dssp ---------CCCHHHHHHHSSS-CCCSCCSTT----TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred ccccCCCCCCccHHHHHhcCCc-hHHHHhccc----cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456789999999999999665 787777652 356666 78999999999999998888776 788887
Q ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCC---cccccccCCCCC
Q 011183 91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---PQLARRTDKKGQ 167 (491)
Q Consensus 91 ~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~g~ 167 (491)
+..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++ .++ +..|..|.
T Consensus 160 -n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~ 236 (373)
T 2fo1_E 160 -NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGM 236 (373)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSC
T ss_pred -cCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCC
Confidence 67899999999999999999999999998 6678889999999999999999999999999987 454 77899999
Q ss_pred CHHHHHHhCC---CHHHHHHHHhcCcccccC--------CCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 011183 168 TALHMAVKGQ---SCEVVKLLLEADAAIVML--------PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236 (491)
Q Consensus 168 t~Lh~Aa~~~---~~~iv~~Ll~~~~~~~~~--------~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t 236 (491)
||||+|+..+ +.+++++|++.|++ ++. .|..|+||||+|+..|+.+++++|++..+++++.+|..|.|
T Consensus 237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 237 TALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp CHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred CHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 9999999988 89999999999988 443 67799999999999999999999998667999999999999
Q ss_pred HHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183 237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 293 (491)
Q Consensus 237 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 293 (491)
|||+|+..++. +++++|++.|+..+.....+.+++..+....+.++.+.|.+.
T Consensus 316 pL~~A~~~g~~----~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 316 PIMLAAQEGRI----EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHHHHHHTCH----HHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCH----HHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999987664 488999999998887777888889888887777777666543
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-36 Score=294.11 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=193.0
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
+.+|.||||.|+..|+.++|++|++.|.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A 113 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA 113 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 44678999999999999999999998876 6778999999999999999999999999999997 67889999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc-c-------------------------cc
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP-Q-------------------------LA 159 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~-~-------------------------~~ 159 (491)
+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.++++.++.... + ..
T Consensus 114 ~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 114 ASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 999999999999998 56788899999999999999999999988776422 1 12
Q ss_pred cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHH
Q 011183 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 239 (491)
Q Consensus 160 ~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~ 239 (491)
...+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~ 270 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFD 270 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence 23567899999999999999999999999998 88899999999999999999999999999 79999999999999999
Q ss_pred HHhh
Q 011183 240 IAEG 243 (491)
Q Consensus 240 ~A~~ 243 (491)
+|..
T Consensus 271 ~A~~ 274 (299)
T 1s70_B 271 VADE 274 (299)
T ss_dssp SCCS
T ss_pred HHHH
Confidence 9964
No 26
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9e-36 Score=288.43 Aligned_cols=225 Identities=20% Similarity=0.181 Sum_probs=201.5
Q ss_pred hhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183 21 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 100 (491)
Q Consensus 21 ~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t 100 (491)
.++.+|.+|.||||+|+..|+.+++++|++.|.+. +.. +|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t 97 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNT 97 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG--SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCc
Confidence 68999999999999999999999999999998763 434 4899999999999999999999999997 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179 (491)
Q Consensus 101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~ 179 (491)
|||+|+..|+.+++++|++. +.+++..+..| .||||+|+..|+.+++++|++++++... ...|+||||+|+..|+.
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHV 174 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChH
Confidence 99999999999999999998 67788999999 8999999999999999999999987622 12899999999999999
Q ss_pred HHHHHHHhcCcccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHH
Q 011183 180 EVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258 (491)
Q Consensus 180 ~iv~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~ 258 (491)
+++++|+++|++ ++.+|..|+|| ||+|+..++.+++++|++ .|++++..|. .|...+ ..+++++|+
T Consensus 175 ~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~~~~----~~~iv~~Ll 241 (285)
T 3kea_A 175 DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLD----DAEIAKMII 241 (285)
T ss_dssp HHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGGTTT----CHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhhhcC----CHHHHHHHH
Confidence 999999999999 88899999998 999999999999999999 7999999884 233333 356888999
Q ss_pred HcCccccc
Q 011183 259 RCGAVRAN 266 (491)
Q Consensus 259 ~~ga~~~~ 266 (491)
++|+....
T Consensus 242 ~~g~~~~~ 249 (285)
T 3kea_A 242 EKHVEYKS 249 (285)
T ss_dssp HHHHHHTT
T ss_pred HcCCCCCC
Confidence 98886543
No 27
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.8e-37 Score=286.80 Aligned_cols=218 Identities=23% Similarity=0.282 Sum_probs=190.5
Q ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183 23 NEVNELGETALFTAADKGHIEVVNELLKYSTKE--GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 100 (491)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t 100 (491)
+.+|.+|.||||+|+..|+.+++++|++.+... +++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence 457899999999999999999999999987542 47888999999999999999999999999999997 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCC-CCCCHHHHHH
Q 011183 101 PLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK-KGQTALHMAV 174 (491)
Q Consensus 101 pL~~A~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~Aa 174 (491)
|||+|+..|+.+++++|++.+.. ..+..+..|.||||+|+..|+.+++++|+++++++ +..+. .|+||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHH
Confidence 99999999999999999998542 35678889999999999999999999999999998 56666 9999999999
Q ss_pred hCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc--cccCCCCCHHHHHhhC
Q 011183 175 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN--ALTRDHKTALDIAEGL 244 (491)
Q Consensus 175 ~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~d~~G~t~L~~A~~~ 244 (491)
..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|++.. ..+..|.||.+.+...
T Consensus 160 ~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC---
T ss_pred HcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhccc
Confidence 99999999999999999 88899999999999999999999999999 788776 7899999998876554
No 28
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-35 Score=281.38 Aligned_cols=230 Identities=22% Similarity=0.239 Sum_probs=177.7
Q ss_pred cccCCCCCChHHHHHHHcC-------------cHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 011183 57 LTRKNRSGFDPLHIAAVQG-------------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123 (491)
Q Consensus 57 l~~~~~~g~TpLh~A~~~g-------------~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~ 123 (491)
++.+|.+|.||||+|+..| +.+++++|+++|+++....|..|.||||+|+..|+.+++++|++. +.
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~ 81 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SA 81 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Confidence 5678999999999999987 899999999999999777899999999999999999999999998 66
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChH
Q 011183 124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 203 (491)
Q Consensus 124 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~Tp 203 (491)
+++..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+||
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~ 160 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSA 160 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 78889999999999999999999999999999855588899999999999999999999999999998 78899999999
Q ss_pred HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhh
Q 011183 204 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIK 283 (491)
Q Consensus 204 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~ 283 (491)
||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++. ++++.|++.|+........+.+++..+....+
T Consensus 161 L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSY----ETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp HHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence 999999999999999999 7999999999999999999987654 48899999999988777788889988888888
Q ss_pred hhhhhhhHHh
Q 011183 284 KDVHTQLEQT 293 (491)
Q Consensus 284 ~~~~~~l~~~ 293 (491)
.++.+.+.+.
T Consensus 236 ~~i~~~l~~~ 245 (253)
T 1yyh_A 236 HDIVRLLDLE 245 (253)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 8777766543
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.8e-35 Score=273.11 Aligned_cols=212 Identities=26% Similarity=0.343 Sum_probs=196.4
Q ss_pred hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183 7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86 (491)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 86 (491)
..+....+++..+..++..|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++
T Consensus 18 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 95 (231)
T 3aji_A 18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence 345677788888889999999999999999999999999999998765 677899999999999999999999999999
Q ss_pred CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183 87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG 166 (491)
Q Consensus 87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g 166 (491)
++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+.++ +..|..|
T Consensus 96 g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 172 (231)
T 3aji_A 96 GAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEG 172 (231)
T ss_dssp TCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTS
T ss_pred CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCC
Confidence 9997 67889999999999999999999999988 5667889999999999999999999999999999987 7789999
Q ss_pred CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183 167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225 (491)
Q Consensus 167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~ 225 (491)
+||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+
T Consensus 173 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a 229 (231)
T 3aji_A 173 NTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEG-EEA 229 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcc-ccc
Confidence 9999999999999999999999999 78899999999999999999999999987 443
No 30
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.9e-35 Score=271.06 Aligned_cols=203 Identities=24% Similarity=0.311 Sum_probs=187.0
Q ss_pred hhhhh-ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183 19 SSVVN-EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 97 (491)
Q Consensus 19 ~~~l~-~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~ 97 (491)
+..++ ..|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++......+..
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 91 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 34444 4589999999999999999999999998766 57789999999999999999999999999998555788999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCC
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~ 177 (491)
|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|++.+
T Consensus 92 g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 92 GTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREG 169 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcC
Confidence 99999999999999999999997 5678889999999999999999999999999999987 778999999999999999
Q ss_pred CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 227 (491)
Q Consensus 178 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~ 227 (491)
+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+..
T Consensus 170 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 170 SYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred CHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 99999999999998 78899999999999999999999999999 56653
No 31
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-34 Score=278.83 Aligned_cols=217 Identities=24% Similarity=0.311 Sum_probs=186.2
Q ss_pred cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCc
Q 011183 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL--SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 134 (491)
Q Consensus 57 l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l--~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~t 134 (491)
++..|..|.||||+|+..|+.+++++|++++++. .+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCC
Confidence 4567899999999999999999999999998773 467889999999999999999999999998 6678889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCccc----------------------------------------------ccccCCCCCC
Q 011183 135 ALHFAARQGHVDVVKALLSKDPQL----------------------------------------------ARRTDKKGQT 168 (491)
Q Consensus 135 pLh~A~~~g~~~iv~~Ll~~~~~~----------------------------------------------~~~~d~~g~t 168 (491)
|||+|+..|+.+++++|++++++. .+..|..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999987541 2556889999
Q ss_pred HHHHHHhCCCHHHHHHHHhcCcccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183 169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 247 (491)
Q Consensus 169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~ 247 (491)
|||+|+..|+.+++++|++.|++ ++.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCc
Confidence 99999999999999999999999 566664 59999999999999999999999 7999999999999999999988764
Q ss_pred hhhHHHHHHHHHcCccccccCCCchHHHHHHHH
Q 011183 248 EEASEIKDCLARCGAVRANELNQPRDELRKTVT 280 (491)
Q Consensus 248 ~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~ 280 (491)
+++++|+++|+..+.....+.+++.....
T Consensus 239 ----~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 239 ----ILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp ----HHHHHHHHTTCCCCCCC------------
T ss_pred ----HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 48999999999988777777777765544
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.3e-35 Score=294.35 Aligned_cols=230 Identities=18% Similarity=0.164 Sum_probs=202.5
Q ss_pred hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc-
Q 011183 8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH- 86 (491)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~- 86 (491)
.+.+..+++ .+.++|..|..|.||||+|+..|+.++|++|++.+++ ..+.+|.||||+|+..|+.+++++|+++
T Consensus 33 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 33 TDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC----CCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 345555554 5789999999999999999999999999999998874 2345799999999999999999999998
Q ss_pred ---CCCCccc-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q 011183 87 ---DPSLSQT-----------------TGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144 (491)
Q Consensus 87 ---~~~l~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~ 144 (491)
+.+. .. .|..|.||||+|+..| +.+++++|++. +.+++..|..|.||||+|+..|+
T Consensus 108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~ 185 (364)
T 3ljn_A 108 KERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRN 185 (364)
T ss_dssp HHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCC
Confidence 6654 23 6778999999999999 99999999998 67788999999999999999999
Q ss_pred HHHHHHHHhCCccc----ccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183 145 VDVVKALLSKDPQL----ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220 (491)
Q Consensus 145 ~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll 220 (491)
.+++++|++++++. .+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+
T Consensus 186 ~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 264 (364)
T 3ljn_A 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELL 264 (364)
T ss_dssp HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHH
Confidence 99999999998882 377899999999999999999999999999999 7899999999999999999999999999
Q ss_pred cCCCCCccc------------ccCCCCCHHHHHhhCCC
Q 011183 221 SLPDTNVNA------------LTRDHKTALDIAEGLPS 246 (491)
Q Consensus 221 ~~~g~~~~~------------~d~~G~t~L~~A~~~~~ 246 (491)
+ .|++++. .+..|+||++.|+..+.
T Consensus 265 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~ 301 (364)
T 3ljn_A 265 Q-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301 (364)
T ss_dssp H-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred H-cCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence 9 5655432 56788888888876543
No 33
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.9e-34 Score=267.76 Aligned_cols=196 Identities=24% Similarity=0.392 Sum_probs=171.4
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhc-cCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc----ccCCCCCCCHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKY-STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS----QTTGPSNATPL 102 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~-~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~----~~~~~~g~tpL 102 (491)
.|+||||+|+..|+.++++.|++. +.+ ++..|..|.||||+|+..|+.+++++|+++++++. ...|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 589999999999999999999997 544 67889999999999999999999999999998753 45567899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccCC-------------CCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCH
Q 011183 103 VSAATRGHTAVVNELLSKDGGLLEISRS-------------NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 169 (491)
Q Consensus 103 ~~A~~~g~~~~v~~LL~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 169 (491)
|+|+..|+.+++++|++. +.+++..+. +|.||||+|+..|+.+++++|+++++++ +.+|..|+||
T Consensus 80 ~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~ 157 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTV 157 (232)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred HHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence 999999999999999998 445555544 7999999999999999999999999887 7789999999
Q ss_pred HHHHHhCCCHHHH----HHHHhcCcccc-----cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 011183 170 LHMAVKGQSCEVV----KLLLEADAAIV-----MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN 228 (491)
Q Consensus 170 Lh~Aa~~~~~~iv----~~Ll~~~~~~~-----~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~ 228 (491)
||+|+..++.+++ ++|++.|++.. +.+|..|+||||+|+..|+.+++++|++ .|.+..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~-~g~~~~ 224 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ-KRKHIA 224 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHHC-
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCccch
Confidence 9999999999888 99999988743 6789999999999999999999999998 454443
No 34
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.7e-33 Score=264.20 Aligned_cols=216 Identities=25% Similarity=0.334 Sum_probs=197.2
Q ss_pred ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183 56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 135 (491)
Q Consensus 56 ~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp 135 (491)
+++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++. +..++..+..|.||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcH
Confidence 36778999999999999999999999999999997 67788999999999999999999999987 56678889999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHH
Q 011183 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215 (491)
Q Consensus 136 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~i 215 (491)
||+|+..|+.+++++|++.++...+..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999655588899999999999999999999999999998 78899999999999999999999
Q ss_pred HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHH
Q 011183 216 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 279 (491)
Q Consensus 216 v~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~ 279 (491)
+++|++ .|++++.+|..|.||||+|+..++. ++++.|++.|+........+.+++..+.
T Consensus 160 ~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 218 (237)
T 3b7b_A 160 AEILLA-AKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDSDVTLKNKEGETPLQCAS 218 (237)
T ss_dssp HHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred HHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 999999 7999999999999999999998764 4888999999988776666777766543
No 35
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.8e-33 Score=257.14 Aligned_cols=193 Identities=30% Similarity=0.355 Sum_probs=179.0
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
+..+.||||.|+..|+.+.++.|++.+. .+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 5678999999999999999999999765 246788999999999999999999999999999997 67889999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC-----HH
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-----CE 180 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~-----~~ 180 (491)
+..|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++++...+..|..|+||||+|+..++ .+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 9999999999999887888899999999999999999999999999999944458889999999999999988 99
Q ss_pred HHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 99999999999 78899999999999999999999999998
No 36
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.3e-33 Score=265.33 Aligned_cols=222 Identities=30% Similarity=0.330 Sum_probs=191.2
Q ss_pred ccCCCCCChHHHHHHHcCcHHHHHHHHh----cCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCC
Q 011183 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 133 (491)
Q Consensus 58 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~ 133 (491)
+..|.+|.||||+|+..|+.+++++|++ .+.++ +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCC
Confidence 4578899999999999999999999997 56666 67889999999999999999999999987 567788899999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCc----ccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCC-CCCChHHHHHH
Q 011183 134 NALHFAARQGHVDVVKALLSKDP----QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD-KFGNTALHVAT 208 (491)
Q Consensus 134 tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A~ 208 (491)
||||+|+..|+.+++++|++.++ ++ +..|..|.||||+|+..++.+++++|++.|++ ++..| ..|.||||+|+
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHH
Confidence 99999999999999999999987 44 67789999999999999999999999999999 56666 88999999999
Q ss_pred HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhh
Q 011183 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHT 288 (491)
Q Consensus 209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (491)
..|+.+++++|++ .|++++.+|..|.||||+|+..++. ++++.|++.|+..+.....+.+++..+......++.+
T Consensus 159 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 159 ENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLL----PLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence 9999999999999 7999999999999999999987664 4888999999987766656666655444443334333
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.5e-33 Score=260.30 Aligned_cols=209 Identities=23% Similarity=0.256 Sum_probs=188.6
Q ss_pred hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-CCCCCChHHHHHHHcCcHHHHHHHHh
Q 011183 7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLD 85 (491)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~ 85 (491)
..+....+++..+...+..|.+|.||||+|+..|+.+++++|++.+++.++.. .+..|.||||+|+..|+.+++++|++
T Consensus 14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 93 (228)
T 2dzn_A 14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93 (228)
T ss_dssp CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 45677788888888888899999999999999999999999999986666666 88999999999999999999999999
Q ss_pred cC--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC
Q 011183 86 HD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD 163 (491)
Q Consensus 86 ~~--~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d 163 (491)
++ +++ +..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.++...+..|
T Consensus 94 ~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d 171 (228)
T 2dzn_A 94 RPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171 (228)
T ss_dssp SSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred CCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence 98 666 67788999999999999999999999998 677889999999999999999999999999999944448889
Q ss_pred CCCCCHHHHHHhCCCHHHHHHHH-hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 164 KKGQTALHMAVKGQSCEVVKLLL-EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 164 ~~g~t~Lh~Aa~~~~~~iv~~Ll-~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
..|+||||+|+..|+.+++++|+ +.|++ ++.+|.+|.||||+|+.. +++++|++
T Consensus 172 ~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 99999999999999999999999 88998 889999999999999765 45666655
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.6e-34 Score=276.10 Aligned_cols=217 Identities=19% Similarity=0.253 Sum_probs=169.9
Q ss_pred hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--ccc----cCCCCCChHHHHHHHc---CcHHHHHHHHhcCCC
Q 011183 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE--GLT----RKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPS 89 (491)
Q Consensus 19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~l~----~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~ 89 (491)
++..+..|..|.||||.|+..|+.++|+.|++.+.+. .+. ..|..|.||||+|+.. |+.+++++|+++|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 4456778999999999999999999999999854221 122 3578999999999987 999999999998764
Q ss_pred Cc----------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCC--------------CCCcHHHHHHHcCCH
Q 011183 90 LS----------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS--------------NGKNALHFAARQGHV 145 (491)
Q Consensus 90 l~----------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~ 145 (491)
.. ...|..|.||||+|+..|+.+++++|++. +.+++..+. .|.||||+|+..|+.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 21 22566899999999999999999999998 566777776 799999999999999
Q ss_pred HHHHHHHh---CCcccccccCCCCCCHHHHHHhCCC---------HHHHHHHHhcCcccc------cCCCCCCChHHHHH
Q 011183 146 DVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAIV------MLPDKFGNTALHVA 207 (491)
Q Consensus 146 ~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~~~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A 207 (491)
+++++|++ .+.++ +.+|..|+||||+|++.++ .+++++|++.|+++. +.+|..|+||||+|
T Consensus 162 ~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 99999999 88887 7889999999999999888 799999999999843 35899999999999
Q ss_pred HHcCcHHHHHHHhcCCCC-CcccccCCCCCHH
Q 011183 208 TRKKRTEIVTELLSLPDT-NVNALTRDHKTAL 238 (491)
Q Consensus 208 ~~~~~~~iv~~Ll~~~g~-~~~~~d~~G~t~L 238 (491)
+..|+.+++++|++ .|+ |+......+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQ-REIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHH-HHTC-------------
T ss_pred HHhChHHHHHHHHH-CCCCCchhhhhhhhhcc
Confidence 99999999999999 677 8887777776654
No 39
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=269.96 Aligned_cols=204 Identities=26% Similarity=0.343 Sum_probs=155.1
Q ss_pred hhhHHHHHhhch-------hhhhccCCCCCCHHHHHHHcCCH-HHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHH
Q 011183 8 AEFDTEVAEIRS-------SVVNEVNELGETALFTAADKGHI-EVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79 (491)
Q Consensus 8 ~~~~~~~~~~~~-------~~l~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~i 79 (491)
.+.+..+++... ..++..|..|.||||.|+..++. .+++.|++.|.+ ++..|.+|.||||+|+..|+.++
T Consensus 24 ~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad--vn~~d~~G~TpLh~A~~~g~~~~ 101 (269)
T 4b93_B 24 LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG--VNVTSQDGSSPLHVAALHGRADL 101 (269)
T ss_dssp HHHHHHHHTCC----------------------------------------CCCC--TTCCCTTSCCHHHHHHHTTCTTH
T ss_pred HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHH
Confidence 445555555432 23677888999999999998875 488999998876 67889999999999999999999
Q ss_pred HHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccc
Q 011183 80 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159 (491)
Q Consensus 80 v~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~ 159 (491)
+++|++.++++ ...+..|.||+++|+..++.++++.|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++
T Consensus 102 v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv- 178 (269)
T 4b93_B 102 IPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI- 178 (269)
T ss_dssp HHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-
T ss_pred HHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-
Confidence 99999999997 67889999999999999999999999988 6678899999999999999999999999999999997
Q ss_pred cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219 (491)
Q Consensus 160 ~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L 219 (491)
+..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++ ++++|
T Consensus 179 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 179 NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence 78899999999999999999999999999999 88999999999999988775 44443
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.8e-32 Score=255.07 Aligned_cols=194 Identities=24% Similarity=0.237 Sum_probs=172.9
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc----cccCCCCCcHHH
Q 011183 63 SGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL----EISRSNGKNALH 137 (491)
Q Consensus 63 ~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~----~~~d~~g~tpLh 137 (491)
.|+||||.|+..|+.++++.|++. +.++ +..|..|.||||+|+..|+.+++++|++.+.... +..|.+|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 489999999999999999999998 7776 7789999999999999999999999999854322 556779999999
Q ss_pred HHHHcCCHHHHHHHHhCCcccccccCC-------------CCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHH
Q 011183 138 FAARQGHVDVVKALLSKDPQLARRTDK-------------KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204 (491)
Q Consensus 138 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpL 204 (491)
+|+..|+.+++++|+++++++ +..+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence 999999999999999999887 44433 799999999999999999999999998 888999999999
Q ss_pred HHHHHcCcHHHH----HHHhcCCCCCc------ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183 205 HVATRKKRTEIV----TELLSLPDTNV------NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 264 (491)
Q Consensus 205 h~A~~~~~~~iv----~~Ll~~~g~~~------~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 264 (491)
|+|+..++.+++ ++|++ .|+++ +.+|..|+||||+|+..++.+ +++.|+++|+..
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~----~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV----MFQHLMQKRKHI 223 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHC
T ss_pred HHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHH----HHHHHHhcCccc
Confidence 999999999988 89998 78887 689999999999999877654 778888877654
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.9e-33 Score=261.86 Aligned_cols=200 Identities=25% Similarity=0.319 Sum_probs=176.8
Q ss_pred cCCCCCChHHHHHHHcCcHHHHHHHHhcCCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 135 (491)
Q Consensus 59 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~---l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp 135 (491)
..|.+|.||||+|+..|+.++++.|++.++. ..+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence 4678899999999999999999999998763 2467888999999999999999999999987 66788899999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCcc-----cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCC-CCChHHHHHHH
Q 011183 136 LHFAARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATR 209 (491)
Q Consensus 136 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~ 209 (491)
||+|+..|+.+++++|++.+++ ..+..|..|.||||+|+..|+.+++++|++.|++ ++.+|. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999864 2467788999999999999999999999999999 677787 99999999999
Q ss_pred cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 011183 210 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA 265 (491)
Q Consensus 210 ~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~ 265 (491)
.|+.+++++|++ .|++++.+|..|.||+|+|+..++. +++++|+++|+...
T Consensus 161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLTLENL 211 (236)
T ss_dssp TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTSCGGG
T ss_pred cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCch----HHHHHHHHcchhhh
Confidence 999999999999 7999999999999999999987664 48899999999654
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8.6e-32 Score=245.94 Aligned_cols=195 Identities=23% Similarity=0.282 Sum_probs=176.2
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140 (491)
Q Consensus 61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 140 (491)
+..+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence 346889999999999999999999998844578899999999999999999999999998 6678889999999999999
Q ss_pred HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCc-----HHH
Q 011183 141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-----TEI 215 (491)
Q Consensus 141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~-----~~i 215 (491)
..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..++ .++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 999999999999665544588899999999999999999999999999944488999999999999999998 999
Q ss_pred HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183 216 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 261 (491)
Q Consensus 216 v~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g 261 (491)
+++|++ .|++++.+|..|+||+|+|+..++.+ +++.|+++|
T Consensus 161 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLME-NGADQSIKDNSGRTAMDYANQKGYTE----ISKILAQYN 201 (201)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTCC
T ss_pred HHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh----HHHHHHhcC
Confidence 999999 79999999999999999999876654 777777765
No 43
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-32 Score=266.62 Aligned_cols=215 Identities=19% Similarity=0.164 Sum_probs=187.8
Q ss_pred HcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 011183 38 DKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117 (491)
Q Consensus 38 ~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~L 117 (491)
...+.+.+..||..+ +++..|..|.||||+|+..|+.+++++|+++|+++. .. +|.||||+|+..|+.+++++|
T Consensus 8 ~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHH
Confidence 344444455555433 267889999999999999999999999999998874 33 489999999999999999999
Q ss_pred HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC-CCHHHHHHhCCCHHHHHHHHhcCcccccCC
Q 011183 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-QTALHMAVKGQSCEVVKLLLEADAAIVMLP 196 (491)
Q Consensus 118 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~ 196 (491)
++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +..|..| .||||+|+..|+.+++++|++.+++..+
T Consensus 82 l~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-- 157 (285)
T 3kea_A 82 LFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-- 157 (285)
T ss_dssp HHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--
T ss_pred HHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--
Confidence 998 6678889999999999999999999999999999997 7788888 8999999999999999999999987422
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH-HHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183 197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA-LDIAEGLPSSEEASEIKDCLARCGAVRANE 267 (491)
Q Consensus 197 d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~ 267 (491)
...|.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|+..++. +++++|+++|+..+..
T Consensus 158 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 158 LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp CSTHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred ccCCccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 2289999999999999999999999 799999999999998 9999987654 5889999999876544
No 44
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.8e-32 Score=251.89 Aligned_cols=213 Identities=28% Similarity=0.309 Sum_probs=188.1
Q ss_pred hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183 8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87 (491)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~ 87 (491)
.+....+++ .+.+++..|..|.||||+|+..|+.+++++|++.+.+.. ...+..|.||||+|+..|+.+++++|++.+
T Consensus 22 ~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 99 (240)
T 3eu9_A 22 YERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99 (240)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred hHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence 445555554 568899999999999999999999999999999887642 345566999999999999999999999999
Q ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHhCCcccccccCC-C
Q 011183 88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-VDVVKALLSKDPQLARRTDK-K 165 (491)
Q Consensus 88 ~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~ 165 (491)
+++ +..+..|.||||+|+..|+.+++++|++. +.+++..+.+|.||||.|+..++ .++++.|++.+.++ +..+. .
T Consensus 100 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~ 176 (240)
T 3eu9_A 100 ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYH 176 (240)
T ss_dssp CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTT
T ss_pred CCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccC
Confidence 997 67789999999999999999999999998 56788899999999999997766 89999999999998 44554 9
Q ss_pred CCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 227 (491)
Q Consensus 166 g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~ 227 (491)
|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++ .+.+.
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~~~~~ 236 (240)
T 3eu9_A 177 KNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQE-ARQAK 236 (240)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-HC---
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-hhhcc
Confidence 99999999999999999999999998 78899999999999999999999999998 45443
No 45
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.3e-32 Score=261.56 Aligned_cols=194 Identities=26% Similarity=0.304 Sum_probs=159.7
Q ss_pred CCCCHHHHHHHcCCHH----HHHHHHhccCcccccc----CCCCCChHHHHHHHc---CcHHHHHHHHhcCCCCcc----
Q 011183 28 LGETALFTAADKGHIE----VVNELLKYSTKEGLTR----KNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQ---- 92 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~l~~----~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~---- 92 (491)
.|.||||.|+..|+.+ ++++|++.+.+ ++. .|..|.||||+|+.. |+.+++++|+++|++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~--i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY--LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC--TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC--cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 3789999999999997 55666667665 555 788999999999999 999999999998776532
Q ss_pred ------cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh
Q 011183 93 ------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-------------GKNALHFAARQGHVDVVKALLS 153 (491)
Q Consensus 93 ------~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~ 153 (491)
..|..|.||||+|+..|+.+++++|++. +.+++..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2346789999999999999999999988 5567777765 8899999999999999999998
Q ss_pred ---CCcccccccCCCCCCHHHHHHh--CCCHH-------HHHHHHhcCcccc------cCCCCCCChHHHHHHHcCcHHH
Q 011183 154 ---KDPQLARRTDKKGQTALHMAVK--GQSCE-------VVKLLLEADAAIV------MLPDKFGNTALHVATRKKRTEI 215 (491)
Q Consensus 154 ---~~~~~~~~~d~~g~t~Lh~Aa~--~~~~~-------iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~~~~~i 215 (491)
.+.++ +.+|..|+||||+|+. .++.+ ++++|+++|+++. +.+|..|+||||+|+..|+.++
T Consensus 158 ~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 158 NPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred ccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 77776 6778888999999888 77877 8888888888832 7788888899999998888888
Q ss_pred HHHHhcCCCCC
Q 011183 216 VTELLSLPDTN 226 (491)
Q Consensus 216 v~~Ll~~~g~~ 226 (491)
+++|++ .|.+
T Consensus 237 v~~Ll~-~g~~ 246 (256)
T 2etb_A 237 FRHILQ-REFS 246 (256)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHh-CCCC
Confidence 888887 3443
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-32 Score=267.07 Aligned_cols=237 Identities=21% Similarity=0.179 Sum_probs=200.4
Q ss_pred HHHHcCCHHHHHHHHhccCccc-------cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 35 TAADKGHIEVVNELLKYSTKEG-------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 35 ~Aa~~g~~~~v~~Ll~~~~~~~-------l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
.++..++.+.++.++....... ....+..|.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence 4677788888888887543311 1122345789999999999999999999999997 6788999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183 108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~ 187 (491)
.|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 9999999999997 6678889999999999999999999999999999987 7789999999999999999999887765
Q ss_pred cC--------------------------cccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183 188 AD--------------------------AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241 (491)
Q Consensus 188 ~~--------------------------~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A 241 (491)
.. .......+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A 239 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAA 239 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHH
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHH
Confidence 32 22223467789999999999999999999998 8999999999999999999
Q ss_pred hhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHH
Q 011183 242 EGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 279 (491)
Q Consensus 242 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~ 279 (491)
+..++.+ ++++|++.|+........+.+++..+.
T Consensus 240 ~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 240 AHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred HhcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 9987654 888999999987766666666555443
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=2.3e-32 Score=269.84 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=168.4
Q ss_pred CHHHHHHHcCCHHHHHHHHhccCcccccc-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183 31 TALFTAADKGHIEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG 109 (491)
Q Consensus 31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g 109 (491)
+.+|+|+..+..++++.|++.+.+ ++. .|..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~d--vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLN--LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCC--SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence 345888888889999999998766 566 7999999999999999999999999999998 688999999999999999
Q ss_pred C---HHHHHHHHhcCCCcccccCCCCCcHHHHHHH----cCCHHHHHHHHhC--------------------Cccccccc
Q 011183 110 H---TAVVNELLSKDGGLLEISRSNGKNALHFAAR----QGHVDVVKALLSK--------------------DPQLARRT 162 (491)
Q Consensus 110 ~---~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~ 162 (491)
+ .++++.|++....+++..|.+|+||||+|+. .|+.++++.|++. +.++ +..
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~ 254 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDK 254 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccc
Confidence 8 6888888887666788999999999999999 8999999999987 5554 677
Q ss_pred CCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242 (491)
Q Consensus 163 d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~ 242 (491)
|..|.||||.|+. +++|++.+ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 255 ~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 255 NGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp -----CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred cccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHH
Confidence 8999999999985 89999983 77899999999999999999999999999 79999999999999999997
Q ss_pred hC
Q 011183 243 GL 244 (491)
Q Consensus 243 ~~ 244 (491)
..
T Consensus 325 ~~ 326 (327)
T 1sw6_A 325 GL 326 (327)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=4.3e-31 Score=234.81 Aligned_cols=157 Identities=35% Similarity=0.473 Sum_probs=82.8
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183 67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146 (491)
Q Consensus 67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~ 146 (491)
+|+.||+.|+.++|+.|+++|+++ +.+|..|+||||+|+..++.++++.|++. +.+++..|.+|+||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHH
Confidence 455555555555555555555554 34455555555555555555555555544 3344455555555555555555555
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 226 (491)
Q Consensus 147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~ 226 (491)
++++|+++++++ +.+|.+|+||||+|++.|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus 85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA~ 161 (169)
T 4gpm_A 85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGGW 161 (169)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C---
T ss_pred HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCC
Confidence 555555555554 44555555555555555555555555555555 45555555555555555555555555555 4555
Q ss_pred cc
Q 011183 227 VN 228 (491)
Q Consensus 227 ~~ 228 (491)
++
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 43
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=9e-31 Score=232.76 Aligned_cols=157 Identities=34% Similarity=0.548 Sum_probs=146.0
Q ss_pred CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183 31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 110 (491)
Q Consensus 31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~ 110 (491)
++|+.||+.|+.++|+.||+.|++ ++.+|..|.||||+|+..++.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 479999999999999999999876 6788999999999999999999999999999998 6889999999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCc
Q 011183 111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190 (491)
Q Consensus 111 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~ 190 (491)
.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|++.|+.+++++|+++|+
T Consensus 83 ~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 83 KEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999988 6778999999999999999999999999999999997 7889999999999999999999999999999
Q ss_pred cc
Q 011183 191 AI 192 (491)
Q Consensus 191 ~~ 192 (491)
++
T Consensus 161 ~i 162 (169)
T 4gpm_A 161 WL 162 (169)
T ss_dssp --
T ss_pred Cc
Confidence 84
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.2e-31 Score=254.94 Aligned_cols=195 Identities=24% Similarity=0.250 Sum_probs=170.3
Q ss_pred CCChHHHHHHHcCcHH----HHHHHHhcCCCCcc---cCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcc-------
Q 011183 63 SGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL------- 125 (491)
Q Consensus 63 ~g~TpLh~A~~~g~~~----iv~~Ll~~~~~l~~---~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~------- 125 (491)
.|+||||.|+..|+.+ ++++|+++++++.. ..|..|.||||+|+.. |+.+++++|++.+....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4889999999999997 66777778998843 3789999999999999 99999999998743211
Q ss_pred ---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCC-------------CCCHHHHHHhCCCHHHHHHHHh--
Q 011183 126 ---EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-------------GQTALHMAVKGQSCEVVKLLLE-- 187 (491)
Q Consensus 126 ---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~Aa~~~~~~iv~~Ll~-- 187 (491)
...|.+|.||||+|+..|+.+++++|+++++++ +..|.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 123467999999999999999999999999987 556665 9999999999999999999999
Q ss_pred -cCcccccCCCCCCChHHHHHHH--cCcHH-------HHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCchhh
Q 011183 188 -ADAAIVMLPDKFGNTALHVATR--KKRTE-------IVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSSEEA 250 (491)
Q Consensus 188 -~~~~~~~~~d~~G~TpLh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~~~d~~G~t~L~~A~~~~~~~~~ 250 (491)
.|++ ++.+|..|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|+..++.+
T Consensus 160 ~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~-- 235 (256)
T 2etb_A 160 HQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE-- 235 (256)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH--
T ss_pred ccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHH--
Confidence 8888 88999999999999999 88888 9999999 79999 999999999999999987654
Q ss_pred HHHHHHHHHcCccc
Q 011183 251 SEIKDCLARCGAVR 264 (491)
Q Consensus 251 ~~i~~~L~~~ga~~ 264 (491)
+++.|+++|...
T Consensus 236 --~v~~Ll~~g~~~ 247 (256)
T 2etb_A 236 --IFRHILQREFSG 247 (256)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHhCCCCC
Confidence 777888877653
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.2e-31 Score=252.46 Aligned_cols=198 Identities=23% Similarity=0.269 Sum_probs=158.1
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh----ccCccccc--cCCCCCChHHHHHH---HcCcHHHHHHHHhcCCCC------
Q 011183 26 NELGETALFTAADKGHIEVVNELLK----YSTKEGLT--RKNRSGFDPLHIAA---VQGHHAIVQVLLDHDPSL------ 90 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~l~--~~~~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~l------ 90 (491)
|..|.||||.|++.|+.+.++.|++ .+.+.+.. ..+..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 5678999999999999996555555 66553222 12377999999999 779999999999986432
Q ss_pred ----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccC--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 011183 91 ----SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--------------SNGKNALHFAARQGHVDVVKALL 152 (491)
Q Consensus 91 ----~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll 152 (491)
....|..|.||||+|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 134455788999999999999999999987 55667666 57889999999999999999999
Q ss_pred h---CCcccccccCCCCCCHHHHHHhCCC---------HHHHHHHHhcCcccc------cCCCCCCChHHHHHHHcCcHH
Q 011183 153 S---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAIV------MLPDKFGNTALHVATRKKRTE 214 (491)
Q Consensus 153 ~---~~~~~~~~~d~~g~t~Lh~Aa~~~~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~~~~~ 214 (491)
+ ++.++ +.+|..|+||||+|+..++ .+++++|+++|+++. +.+|..|+||||+|+..|+.+
T Consensus 161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 8 77776 7778889999999997776 688888998888732 678888999999999999999
Q ss_pred HHHHHhcCCCCC
Q 011183 215 IVTELLSLPDTN 226 (491)
Q Consensus 215 iv~~Ll~~~g~~ 226 (491)
++++|++ .|.+
T Consensus 240 ~v~~Ll~-~g~~ 250 (260)
T 3jxi_A 240 IFQHIIR-REIA 250 (260)
T ss_dssp HHHHHHH-HHHH
T ss_pred HHHHHHH-hCCC
Confidence 9999888 3443
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=5.4e-31 Score=252.93 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=170.7
Q ss_pred ccCCCCCChHHHHHHHcCcHHHHHHHHh----cCCCCcc---cCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCC----
Q 011183 58 TRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGG---- 123 (491)
Q Consensus 58 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~---~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~---- 123 (491)
...|..|.||||.|+..|+.++++.|++ .++++.. ..|..|.||||+|+.. |+.+++++|++.+..
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 4578889999999999999999999887 4555422 4578999999999987 999999999987421
Q ss_pred ------cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCC--------------CCCCHHHHHHhCCCHHHHH
Q 011183 124 ------LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVVK 183 (491)
Q Consensus 124 ------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~Aa~~~~~~iv~ 183 (491)
.....|..|.||||+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+.++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 12225678999999999999999999999999987 55565 7999999999999999999
Q ss_pred HHHh---cCcccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCcc-------cccCCCCCHHHHHhhC
Q 011183 184 LLLE---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNVN-------ALTRDHKTALDIAEGL 244 (491)
Q Consensus 184 ~Ll~---~~~~~~~~~d~~G~TpLh~A~~~~~---------~~iv~~Ll~~~g~~~~-------~~d~~G~t~L~~A~~~ 244 (491)
+|++ .|++ ++.+|.+|+||||+|+..++ .+++++|++ .|++++ .+|..|+||||+|+..
T Consensus 166 ~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 166 FLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHh
Confidence 9999 8888 88999999999999999988 799999999 799986 5999999999999998
Q ss_pred CCchhhHHHHHHHHHcCcc
Q 011183 245 PSSEEASEIKDCLARCGAV 263 (491)
Q Consensus 245 ~~~~~~~~i~~~L~~~ga~ 263 (491)
++.+ ++++|+++|+.
T Consensus 244 g~~~----iv~~Ll~~ga~ 258 (273)
T 2pnn_A 244 GKIG----VLAYILQREIH 258 (273)
T ss_dssp TCHH----HHHHHHHHHTC
T ss_pred ChHH----HHHHHHHCCCC
Confidence 7654 88899999984
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=254.13 Aligned_cols=193 Identities=25% Similarity=0.313 Sum_probs=151.9
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH-
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA- 106 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~- 106 (491)
.+.+++|.|+..|+.+.++.+++.+.+..++..|.+|.||||+|+..|+.+++++|++.|+...+..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 4567778888888888888888766555567778888888888888888888888888887334677788888888888
Q ss_pred ----HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHH
Q 011183 107 ----TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182 (491)
Q Consensus 107 ----~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv 182 (491)
..++.++++.|++.+ ...+..+..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHH
Confidence 557788888888773 555667777888888888888888888888888876 66788888888888888888888
Q ss_pred HHHHh-cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183 183 KLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 223 (491)
Q Consensus 183 ~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~ 223 (491)
++|++ .|++ ++.+|..|+||||+|+..|+.+++++|++..
T Consensus 233 ~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 233 GLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 88888 6776 6778888888888888888888888888743
No 54
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.8e-29 Score=229.09 Aligned_cols=171 Identities=24% Similarity=0.260 Sum_probs=128.4
Q ss_pred HHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCccc
Q 011183 14 VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT 93 (491)
Q Consensus 14 ~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~ 93 (491)
+.+..+.++|.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +.
T Consensus 20 i~~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~ 96 (192)
T 2rfm_A 20 INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NT 96 (192)
T ss_dssp HHHTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TC
T ss_pred hhhhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CC
Confidence 33344566777888888888888888888888888887654 5667777888888888888888888888887776 56
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHH
Q 011183 94 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173 (491)
Q Consensus 94 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 173 (491)
.|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 97 KDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASA 174 (192)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHH
Confidence 677777888888877777777777776 4556677777777777777777777777777777765 56677777777777
Q ss_pred HhCCCHHHHHHHHhcC
Q 011183 174 VKGQSCEVVKLLLEAD 189 (491)
Q Consensus 174 a~~~~~~iv~~Ll~~~ 189 (491)
+..|+.+++++|++.+
T Consensus 175 ~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhcc
Confidence 7777777777777654
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.3e-30 Score=248.27 Aligned_cols=198 Identities=22% Similarity=0.193 Sum_probs=169.6
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHh----cCCCCccc---CCCCCCCHHHHHH---HcCCHHHHHHHHhcCC--------
Q 011183 61 NRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQT---TGPSNATPLVSAA---TRGHTAVVNELLSKDG-------- 122 (491)
Q Consensus 61 ~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~~---~~~~g~tpL~~A~---~~g~~~~v~~LL~~~~-------- 122 (491)
+..|+||||.|++.|+.+.++.|++ .++++... .|..|.||||+|+ ..|+.+++++|++.+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 5678999999999999996555555 88887422 2477999999999 7799999999998742
Q ss_pred --CcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC--------------CCCCCHHHHHHhCCCHHHHHHHH
Q 011183 123 --GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD--------------KKGQTALHMAVKGQSCEVVKLLL 186 (491)
Q Consensus 123 --~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~Aa~~~~~~iv~~Ll 186 (491)
......|.+|.||||+|+..|+.+++++|+++++++ +..| ..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 223445568999999999999999999999999987 5556 68999999999999999999999
Q ss_pred h---cCcccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCc
Q 011183 187 E---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSS 247 (491)
Q Consensus 187 ~---~~~~~~~~~d~~G~TpLh~A~~~~~---------~~iv~~Ll~~~g~~~-------~~~d~~G~t~L~~A~~~~~~ 247 (491)
+ .|++ ++.+|..|+||||+|+..++ .+++++|++ .|+++ +.+|..|+||||+|+..++.
T Consensus 161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 9 8888 88999999999999998887 799999999 78988 78999999999999998765
Q ss_pred hhhHHHHHHHHHcCcccc
Q 011183 248 EEASEIKDCLARCGAVRA 265 (491)
Q Consensus 248 ~~~~~i~~~L~~~ga~~~ 265 (491)
+ +++.|++.|....
T Consensus 239 ~----~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 239 G----IFQHIIRREIADA 252 (260)
T ss_dssp H----HHHHHHHHHHHHH
T ss_pred H----HHHHHHHhCCCcc
Confidence 4 7888888877543
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.3e-29 Score=225.68 Aligned_cols=169 Identities=23% Similarity=0.320 Sum_probs=89.0
Q ss_pred CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183 30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG 109 (491)
Q Consensus 30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g 109 (491)
.||||.|+..|+.++++.|++.+.. .++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 4566666666666666666665432 23445555666666666666666666666665554 444555555555555555
Q ss_pred CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183 110 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189 (491)
Q Consensus 110 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~ 189 (491)
+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..++.+++++|++++
T Consensus 81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 55555555554 3344455555555555555555555555555555544 444555555555555555555555555555
Q ss_pred cccccCCCCCCChH
Q 011183 190 AAIVMLPDKFGNTA 203 (491)
Q Consensus 190 ~~~~~~~d~~G~Tp 203 (491)
++ ...++..|.||
T Consensus 159 ~~-~~~~~~~~~~p 171 (172)
T 3v30_A 159 LK-LFQSNLVPADP 171 (172)
T ss_dssp HH-HSCC-------
T ss_pred HH-HhcccCCCCCC
Confidence 54 33334444443
No 57
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.7e-30 Score=256.46 Aligned_cols=241 Identities=14% Similarity=0.063 Sum_probs=187.7
Q ss_pred hhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc---------------CCCCCChHHHHHHHcCcHHHH
Q 011183 16 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTR---------------KNRSGFDPLHIAAVQGHHAIV 80 (491)
Q Consensus 16 ~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~---------------~~~~g~TpLh~A~~~g~~~iv 80 (491)
-.++++++..|..|.|+++ |+.++|+.|++.|.++.... ......+.+|+|+..+..+++
T Consensus 39 l~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 113 (327)
T 1sw6_A 39 LSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113 (327)
T ss_dssp TTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHH
T ss_pred hhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHH
Confidence 3468899999999999988 99999999999886543210 011112346889999999999
Q ss_pred HHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCcc
Q 011183 81 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSKDPQ 157 (491)
Q Consensus 81 ~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~ 157 (491)
++|++.|+++....|..|+||||+|+..|+.+++++|+++ +++++..|.+|+||||+|+..|+ .++++.|++.+..
T Consensus 114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~ 192 (327)
T 1sw6_A 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192 (327)
T ss_dssp HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence 9999999998544899999999999999999999999998 67789999999999999999998 6888888887644
Q ss_pred cccccCCCCCCHHHHHHh----CCCHHHHHHHHhc--------------------CcccccCCCCCCChHHHHHHHcCcH
Q 011183 158 LARRTDKKGQTALHMAVK----GQSCEVVKLLLEA--------------------DAAIVMLPDKFGNTALHVATRKKRT 213 (491)
Q Consensus 158 ~~~~~d~~g~t~Lh~Aa~----~~~~~iv~~Ll~~--------------------~~~~~~~~d~~G~TpLh~A~~~~~~ 213 (491)
..+..|..|+||||+|++ .|+.+++++|++. +++ ++.+|..|.||||.|+.
T Consensus 193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~---- 267 (327)
T 1sw6_A 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD---- 267 (327)
T ss_dssp GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS----
T ss_pred cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH----
Confidence 457889999999999999 8999999999987 555 77889999999999985
Q ss_pred HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHH
Q 011183 214 EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR 276 (491)
Q Consensus 214 ~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~ 276 (491)
+++|++. +++.+|..|+||||+|+..++. +++++|+++|+..+.....+.+++.
T Consensus 268 --~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~----~~v~~Ll~~Gad~~~~d~~G~TpL~ 321 (327)
T 1sw6_A 268 --LKWIIAN---MLNAQDSNGDTCLNIAARLGNI----SIVDALLDYGADPFIANKSGLRPVD 321 (327)
T ss_dssp --HHHHHHH---TTTCCCTTSCCHHHHHHHHCCH----HHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred --HHHHHHh---CCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHH
Confidence 8888883 7999999999999999997764 5889999999987766655555543
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.8e-29 Score=221.11 Aligned_cols=170 Identities=23% Similarity=0.229 Sum_probs=153.9
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143 (491)
Q Consensus 64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g 143 (491)
+.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCC
Confidence 568999999999999999999999987788899999999999999999999999988 5678889999999999999999
Q ss_pred CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183 144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 223 (491)
Q Consensus 144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~ 223 (491)
+.+++++|++++.++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~ 157 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-H 157 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence 999999999999987 77899999999999999999999999999998 78899999999999999999999999999 7
Q ss_pred CCCcccccCCCCCH
Q 011183 224 DTNVNALTRDHKTA 237 (491)
Q Consensus 224 g~~~~~~d~~G~t~ 237 (491)
++++...+..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 99999999999887
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=8.4e-29 Score=218.05 Aligned_cols=157 Identities=25% Similarity=0.335 Sum_probs=79.2
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 108 (491)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~ 108 (491)
..||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|+++++++ +..|..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 34555555555555555555554433 34445555555555555 5555555555555554 34444555555555555
Q ss_pred CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188 (491)
Q Consensus 109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~ 188 (491)
|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++++..+..|..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 555555555544 2334444445555555555555555555555544443344444444555555554555555555444
Q ss_pred Cc
Q 011183 189 DA 190 (491)
Q Consensus 189 ~~ 190 (491)
|+
T Consensus 160 GA 161 (162)
T 1ihb_A 160 GA 161 (162)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.1e-28 Score=223.90 Aligned_cols=161 Identities=24% Similarity=0.289 Sum_probs=149.6
Q ss_pred cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHH
Q 011183 57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 136 (491)
Q Consensus 57 l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpL 136 (491)
++.+|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence 4567889999999999999999999999999887 67788999999999999999999999988 566888899999999
Q ss_pred HHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHH
Q 011183 137 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216 (491)
Q Consensus 137 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv 216 (491)
|+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999987 77899999999999999999999999999998 788999999999999999999999
Q ss_pred HHHhc
Q 011183 217 TELLS 221 (491)
Q Consensus 217 ~~Ll~ 221 (491)
++|++
T Consensus 184 ~~Ll~ 188 (192)
T 2rfm_A 184 KIFTE 188 (192)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99987
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.4e-28 Score=216.72 Aligned_cols=159 Identities=25% Similarity=0.325 Sum_probs=147.7
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142 (491)
Q Consensus 63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~ 142 (491)
...||||.|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++. +.+++..|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHc
Confidence 3569999999999999999999999987 6788999999999999 999999999998 667888999999999999999
Q ss_pred CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 011183 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222 (491)
Q Consensus 143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~ 222 (491)
|+.+++++|++++.++ +..|..|+||||+|++.|+.+++++|++.|++.++.+|..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~- 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA- 158 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence 9999999999999887 77899999999999999999999999999998778999999999999999999999999999
Q ss_pred CCCC
Q 011183 223 PDTN 226 (491)
Q Consensus 223 ~g~~ 226 (491)
.|+|
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 6764
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.4e-28 Score=216.42 Aligned_cols=160 Identities=23% Similarity=0.311 Sum_probs=124.5
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
.|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 577888888888888888888887644 5667778888888888888888888888887776 5667778888888888
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183 108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~ 187 (491)
.|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 79 KGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 8888888888876 4556677777888888888888888888888777776 5667777788888887778888887777
Q ss_pred cCccc
Q 011183 188 ADAAI 192 (491)
Q Consensus 188 ~~~~~ 192 (491)
++.+.
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=241.26 Aligned_cols=192 Identities=26% Similarity=0.280 Sum_probs=173.9
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH--
Q 011183 64 GFDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA-- 140 (491)
Q Consensus 64 g~TpLh~A~~~g~~~iv~~Ll~~~~~-l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~-- 140 (491)
+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 45789999999999999999887554 236788999999999999999999999999976688999999999999999
Q ss_pred ---HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHH
Q 011183 141 ---RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 217 (491)
Q Consensus 141 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~ 217 (491)
..++.++++.|++.+... ...|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 668999999999999765 67788999999999999999999999999999 8899999999999999999999999
Q ss_pred HHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183 218 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 261 (491)
Q Consensus 218 ~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g 261 (491)
+|++..|++++.+|..|+||||+|+..++.+ ++++|++.+
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSE----IASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH----HHHHHHhcc
Confidence 9999789999999999999999999987654 666666554
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.3e-28 Score=213.74 Aligned_cols=155 Identities=27% Similarity=0.344 Sum_probs=138.6
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142 (491)
Q Consensus 63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~ 142 (491)
.|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence 4789999999999999999999998876 67788999999999999999999999988 566788888999999999999
Q ss_pred CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 9999999999998887 67788899999999999999999999999888 67888999999999999999999999887
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8.1e-28 Score=213.67 Aligned_cols=157 Identities=29% Similarity=0.407 Sum_probs=102.2
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140 (491)
Q Consensus 61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 140 (491)
...+.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence 334456666666666666666666666665 44555666666666666666666666655 3445556666666666666
Q ss_pred HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183 141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220 (491)
Q Consensus 141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll 220 (491)
..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 666666666666666665 55566677777777777777777777777666 5666667777777777777777777766
Q ss_pred c
Q 011183 221 S 221 (491)
Q Consensus 221 ~ 221 (491)
+
T Consensus 167 ~ 167 (169)
T 2y1l_E 167 K 167 (169)
T ss_dssp T
T ss_pred H
Confidence 5
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.1e-27 Score=212.79 Aligned_cols=160 Identities=29% Similarity=0.472 Sum_probs=142.5
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 104 (491)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 104 (491)
....+.||||.|++.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 455678899999999999999999998765 6778889999999999999999999999999887 6778899999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183 105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184 (491)
Q Consensus 105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~ 184 (491)
|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|++.++.+++++
T Consensus 87 A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHH
Confidence 9999999999999987 5667888999999999999999999999999999887 7788999999999999999999999
Q ss_pred HHhcC
Q 011183 185 LLEAD 189 (491)
Q Consensus 185 Ll~~~ 189 (491)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 98865
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=6.2e-28 Score=216.49 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=98.8
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143 (491)
Q Consensus 64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g 143 (491)
+.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC
Confidence 445555555555555555555554433344555555555555555555555555554 3444555555666666666666
Q ss_pred CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183 144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 223 (491)
Q Consensus 144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~ 223 (491)
+.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~ 160 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK-M 160 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-h
Confidence 666666666666554 55566666666666666666666666666666 55666666666666666666666666666 5
Q ss_pred CCCcccccCCC
Q 011183 224 DTNVNALTRDH 234 (491)
Q Consensus 224 g~~~~~~d~~G 234 (491)
|++++..+..+
T Consensus 161 g~~~~~~~~~~ 171 (179)
T 3f6q_A 161 GQNLNRIPYKD 171 (179)
T ss_dssp TCCCSCBCCCC
T ss_pred hcCcccCCccc
Confidence 66666554443
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.9e-27 Score=207.59 Aligned_cols=149 Identities=29% Similarity=0.386 Sum_probs=88.4
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q 011183 66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145 (491)
Q Consensus 66 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~ 145 (491)
||||.|+..|+.+++++|++++++.. .+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChH
Confidence 55555555555555555555555442 344555555555555555555555554 334455555566666666666666
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183 146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219 (491)
Q Consensus 146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L 219 (491)
+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 6666666665554 45566666666666666666666666666665 555666666666666666666666654
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-30 Score=238.72 Aligned_cols=197 Identities=17% Similarity=0.115 Sum_probs=160.6
Q ss_pred HHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 011183 45 VNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123 (491)
Q Consensus 45 v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~ 123 (491)
++.|++.+.+.+ .+..+..|.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence 456777776543 3445667788999999999999999999999987 67888999999999999999999999988 66
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHH--HhCCCHHHHHHHHhcCcccccCCCCCCC
Q 011183 124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEADAAIVMLPDKFGN 201 (491)
Q Consensus 124 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--a~~~~~~iv~~Ll~~~~~~~~~~d~~G~ 201 (491)
+++..|.+|.||||+|+..|+.+++++|+++++++....+..|+||||+| +..++.+++++|++.|++ ++.+|..|.
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~ 157 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV 157 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence 78889999999999999999999999999999998444457999999999 999999999999999998 788899999
Q ss_pred hHHHHHHHcCcHHHHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCch
Q 011183 202 TALHVATRKKRTEIVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSE 248 (491)
Q Consensus 202 TpLh~A~~~~~~~iv~~Ll~~~g~~--~~~~d~~G~t~L~~A~~~~~~~ 248 (491)
||+|.++..... +.|++ .|++ ++.+|..|+||||+|+..++.+
T Consensus 158 ~~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~ 202 (229)
T 2vge_A 158 YALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG 202 (229)
T ss_dssp EESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred HHHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence 999976555432 45666 6877 7788999999999999887655
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=8.6e-28 Score=212.43 Aligned_cols=157 Identities=24% Similarity=0.375 Sum_probs=64.9
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
|.+|+||||.|+..|+.++++.|++.+. .+....+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 3344444444444444444444444321 123333444444444444444444444444444443 33334444444444
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L 185 (491)
+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|++ ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHH
Confidence 444444444444433 2233333334444444444444444444444443333 3333334444443322 333444433
Q ss_pred Hh
Q 011183 186 LE 187 (491)
Q Consensus 186 l~ 187 (491)
++
T Consensus 160 ~~ 161 (165)
T 3twr_A 160 RG 161 (165)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=9.3e-28 Score=212.19 Aligned_cols=161 Identities=27% Similarity=0.256 Sum_probs=147.0
Q ss_pred CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139 (491)
Q Consensus 60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A 139 (491)
.|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence 4677899999999999999999999987766678888999999999999999999999998 567888999999999999
Q ss_pred HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219 (491)
Q Consensus 140 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L 219 (491)
+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence 9999999999999999997 77899999999999999999999999999998 78899999999999877 899999999
Q ss_pred hcCCCC
Q 011183 220 LSLPDT 225 (491)
Q Consensus 220 l~~~g~ 225 (491)
++ .|+
T Consensus 160 ~~-~gA 164 (165)
T 3twr_A 160 RG-DAA 164 (165)
T ss_dssp HT-C--
T ss_pred hh-ccc
Confidence 98 443
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=3.6e-27 Score=205.86 Aligned_cols=151 Identities=28% Similarity=0.385 Sum_probs=140.9
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 108 (491)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~ 108 (491)
+.||||.|+..|+.+++++|++.+.+. . .+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 468999999999999999999988763 2 5888999999999999999999999999997 67889999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185 (491)
Q Consensus 109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L 185 (491)
|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999987 6678889999999999999999999999999999987 77899999999999999999999987
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.3e-29 Score=236.87 Aligned_cols=210 Identities=16% Similarity=0.145 Sum_probs=148.3
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
+..|.||||.|++.|+.+.++.|+++|.+.+ .+..|.||||.|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 4569999999999999999999999988754 3467899999999999999999999999987 77899999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC-CHHHHH--HhCCCHHHH
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMA--VKGQSCEVV 182 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--a~~~~~~iv 182 (491)
+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|. ||||+| +..|+.+++
T Consensus 78 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHH
Confidence 999999999999988 6778999999999999999999999999999999998 55666555 999999 788999999
Q ss_pred HHHHhcCcccccCC---------CCCCChHHHHHHHcCcHHHHHHHhcCCCCC------cccccCCCCCHHHHHhhCC
Q 011183 183 KLLLEADAAIVMLP---------DKFGNTALHVATRKKRTEIVTELLSLPDTN------VNALTRDHKTALDIAEGLP 245 (491)
Q Consensus 183 ~~Ll~~~~~~~~~~---------d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~------~~~~d~~G~t~L~~A~~~~ 245 (491)
++|++.+++ .+.. |..+.++++++...|. +++.|.+ .+.+ ....+..|.+|.++....+
T Consensus 156 ~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~ 229 (239)
T 1ycs_B 156 QFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGLYP 229 (239)
T ss_dssp HHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-CTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred HHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence 999999887 3333 6778999999988886 3444433 3333 2345677888988876553
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=3.9e-27 Score=206.08 Aligned_cols=153 Identities=27% Similarity=0.396 Sum_probs=88.1
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 108 (491)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~ 108 (491)
|.||||.|+..|+.++++.|++. ...+++..|..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 34566666666666666666665 322345556666666666 6666666666666666655 44555566666666666
Q ss_pred CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187 (491)
Q Consensus 109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~ 187 (491)
|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++. .++ +..|..|.||||+|++.|+.+++++|++
T Consensus 79 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 79 GFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred CcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 666666666654 344555555555555555555555555555555 333 4445555555555555555555555544
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-30 Score=243.82 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=167.0
Q ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHH
Q 011183 23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL 102 (491)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL 102 (491)
+..+.+|.||||+|+..|+.+++++|++.|.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|||
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpL 91 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPL 91 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence 44555677889999999999999999998876 6778999999999999999999999999999997 67889999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHH--HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183 103 VSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179 (491)
Q Consensus 103 ~~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~ 179 (491)
|+|+..|+.+++++|++. +.+++..+ .+|.||||+| +..|+.+++++|+++++++ +..|..|.|++|.++..+..
T Consensus 92 h~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~~ 169 (229)
T 2vge_A 92 HCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGD 169 (229)
T ss_dssp HHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhcccc
Confidence 999999999999999988 55666665 6999999999 9999999999999999987 67788899999976655433
Q ss_pred HHHHHHHhcCccc-ccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 180 EVVKLLLEADAAI-VMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 180 ~iv~~Ll~~~~~~-~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
++|++.|+++ ++.+|.+|+||||+|+..|+.++|+.++-
T Consensus 170 ---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 170 ---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp ---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred ---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 6778888874 57789999999999999999998876543
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.7e-27 Score=212.29 Aligned_cols=168 Identities=21% Similarity=0.286 Sum_probs=151.3
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183 27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 106 (491)
Q Consensus 27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 106 (491)
.++.||||.|+..|+.+++++|++.+. .+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 467899999999999999999999753 346788999999999999999999999999999997 678899999999999
Q ss_pred HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183 107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186 (491)
Q Consensus 107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll 186 (491)
..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..++.+++++|+
T Consensus 81 ~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 81 SHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999998 6678899999999999999999999999999999997 788999999999999999999999999
Q ss_pred hcCcccccCCCCC
Q 011183 187 EADAAIVMLPDKF 199 (491)
Q Consensus 187 ~~~~~~~~~~d~~ 199 (491)
+.|++ ++..+..
T Consensus 159 ~~g~~-~~~~~~~ 170 (179)
T 3f6q_A 159 KMGQN-LNRIPYK 170 (179)
T ss_dssp HTTCC-CSCBCCC
T ss_pred HhhcC-cccCCcc
Confidence 99998 4544443
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=6.9e-27 Score=204.49 Aligned_cols=153 Identities=27% Similarity=0.341 Sum_probs=138.2
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143 (491)
Q Consensus 64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g 143 (491)
|.||||.|+..|+.++++.|+++.+...+..|..|.||||+ +..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence 56899999999999999999998433347788899999999 999999999999988 6678889999999999999999
Q ss_pred CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999887 77889999999999999999999999998 66 78889999999999999999999999987
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.3e-27 Score=224.95 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=129.5
Q ss_pred CCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 011183 62 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141 (491)
Q Consensus 62 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~ 141 (491)
..|.||||.|+..|+.+.++.|+++|+++. .+..|.||||.|+..|+.+++++|++. +.+++..|.+|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 458999999999999999999999999984 347889999999999999999999988 45788999999999999999
Q ss_pred cCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCC-hHHHHH--HHcCcHHHHHH
Q 011183 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN-TALHVA--TRKKRTEIVTE 218 (491)
Q Consensus 142 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A--~~~~~~~iv~~ 218 (491)
.|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 99999999999999987 78899999999999999999999999999999 677777776 999999 78899999999
Q ss_pred HhcCCCCCcccc---------cCCCCCHHHHHhhCC
Q 011183 219 LLSLPDTNVNAL---------TRDHKTALDIAEGLP 245 (491)
Q Consensus 219 Ll~~~g~~~~~~---------d~~G~t~L~~A~~~~ 245 (491)
|++ .|++++.. +..+.++++++...+
T Consensus 158 Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 158 LYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp HHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred HHH-hhhcccccccceEEEEeccCCCCCCcccccCC
Confidence 998 68877765 566778877776544
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.5e-28 Score=245.82 Aligned_cols=227 Identities=19% Similarity=0.159 Sum_probs=167.4
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCC
Q 011183 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSN 98 (491)
Q Consensus 22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~--~~~~~~g 98 (491)
+...+.+++||||+|++.|+.++|++|++.+.+.. ....|..|.||||+|+..|+.++|++|+++|++.. +..+.+
T Consensus 85 l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~- 163 (376)
T 2aja_A 85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN- 163 (376)
T ss_dssp HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred HHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence 34456778899999999999999999999876321 22345678899999999999999999999997521 122222
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCcccc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183 99 ATPLVSAATRGHTAVVNELLSKDGGLLEI--SRSNGKNALHFAA-RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175 (491)
Q Consensus 99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~ 175 (491)
.||||+|+..|+.+++++|+++ +.+++. .|.+|.||||+|+ ..|+.+++++|++.+. .|.||||.|++
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~ 234 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFE 234 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHH
Confidence 8999999999999999999998 445554 7788999999999 9999999999999653 27899999999
Q ss_pred CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc---------------------------CcHHHHHHHhcCCCCCc-
Q 011183 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---------------------------KRTEIVTELLSLPDTNV- 227 (491)
Q Consensus 176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~---------------------------~~~~iv~~Ll~~~g~~~- 227 (491)
+|+.+++++|++.|+++ +..| ++++.|+.. +..+.+++|++...++.
T Consensus 235 ~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l 309 (376)
T 2aja_A 235 YGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309 (376)
T ss_dssp TTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG
T ss_pred CCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhh
Confidence 99999999999988763 2221 122222222 23455666665322211
Q ss_pred ---ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183 228 ---NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE 267 (491)
Q Consensus 228 ---~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~ 267 (491)
....+.+.||||+|+..++.+ ++++|++.|.++...
T Consensus 310 ~~~g~~~n~~~~~L~~A~~~g~~e----~v~lLl~~~~v~~~~ 348 (376)
T 2aja_A 310 APTATIPGDANELLRLALRLGNQG----ACALLLSIPSVLALT 348 (376)
T ss_dssp SSCCSSTTCCCHHHHHHHHHTCTT----HHHHHTTSHHHHHSC
T ss_pred hccCCCCCCccHHHHHHHHcCcHH----HHHHHHcChHHHHHH
Confidence 122345668899998877655 778888877665443
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=5.6e-25 Score=187.95 Aligned_cols=132 Identities=24% Similarity=0.392 Sum_probs=87.9
Q ss_pred hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC-C
Q 011183 20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS-N 98 (491)
Q Consensus 20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~-g 98 (491)
.+++..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|+++++++ +..|.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCC
Confidence 45666677777777777777777777777776544 45566667777777777 7777777777777665 455555 6
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc
Q 011183 99 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156 (491)
Q Consensus 99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 156 (491)
.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 6666666666666666666665 34556666666666666666666666666666544
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=6e-25 Score=192.42 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCC-HHHHH
Q 011183 95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHMA 173 (491)
Q Consensus 95 ~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~A 173 (491)
+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+ .|+.+++++|++++.++ +..|..|+| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 44455555555555555555555554 3445555556666666653 56666666666666554 555666666 77777
Q ss_pred HhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241 (491)
Q Consensus 174 a~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A 241 (491)
+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 777777777777777766 66677777777777777777777777777 6777777777777776643
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.1e-24 Score=190.74 Aligned_cols=143 Identities=24% Similarity=0.331 Sum_probs=63.2
Q ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC-H
Q 011183 23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT-P 101 (491)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t-p 101 (491)
+..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+ .|+.+++++|+++|+++ +..|..|.| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence 34445555555555555555555555554433 3444555555555553 55555555555555554 344444554 5
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHH
Q 011183 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 171 (491)
Q Consensus 102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh 171 (491)
||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||.+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~ 149 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence 5555555555555555544 3334444444555555555555555555555444443 334444444433
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=2.4e-24 Score=183.96 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=104.0
Q ss_pred ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-CCc
Q 011183 56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKN 134 (491)
Q Consensus 56 ~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~-g~t 134 (491)
+++..+..|.||||.|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++. +.+++..|.. |.|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCC
Confidence 46677888888888888888888888888888776 5667788888888888 888888888876 4556777777 788
Q ss_pred HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183 135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191 (491)
Q Consensus 135 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~ 191 (491)
|||+|+..|+.+++++|+++++++ +..|..|+||||+|++.++.+++++|+++|++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 888888888888888888887776 66677788888888888888888888777653
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=6e-25 Score=198.34 Aligned_cols=155 Identities=19% Similarity=0.112 Sum_probs=106.4
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcH----HHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183 29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHH----AIVQVLLDHDPSLSQTTGPSNATPLV 103 (491)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~l~~~~~~~g~tpL~ 103 (491)
+.++|+.|++.|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 4678888888888888888887543 2233 6688888888888864 4888888888887 677788888888
Q ss_pred HHHHcCC------HHHHHHHHhcCCCcccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCcccccccCCCCCCHH
Q 011183 104 SAATRGH------TAVVNELLSKDGGLLEISRSNGK-NALHFAARQG-----HVDVVKALLS-KDPQLARRTDKKGQTAL 170 (491)
Q Consensus 104 ~A~~~g~------~~~v~~LL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~d~~g~t~L 170 (491)
+|+..|+ .+++++|+++ +++++..|.+|. ||||+|+..+ +.+++++|++ +++++ +.+|..|+|||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL 158 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL 158 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence 8888776 4566666665 455666666666 6666666633 2345666666 55554 55566666666
Q ss_pred HHHHhCCCHHHHHHHHhcCc
Q 011183 171 HMAVKGQSCEVVKLLLEADA 190 (491)
Q Consensus 171 h~Aa~~~~~~iv~~Ll~~~~ 190 (491)
|+|++.++.+++++|.+...
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666655443
No 85
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=5.4e-26 Score=227.25 Aligned_cols=195 Identities=18% Similarity=0.122 Sum_probs=155.5
Q ss_pred CCHHHHHHH-cCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCCHHHHHH
Q 011183 30 ETALFTAAD-KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPLVSAA 106 (491)
Q Consensus 30 ~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~--~~~~~~g~tpL~~A~ 106 (491)
.++++.|.. .++.++++++++.+.+ +.||||.|+..|+.+++++|+++++... ...+..|.||||+|+
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 467787776 5788899999886543 4599999999999999999999987321 233456789999999
Q ss_pred HcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccc-ccCCCCCCHHHHHH-hCCCHHHH
Q 011183 107 TRGHTAVVNELLSKDGGL--LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR-RTDKKGQTALHMAV-KGQSCEVV 182 (491)
Q Consensus 107 ~~g~~~~v~~LL~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~Lh~Aa-~~~~~~iv 182 (491)
..|+.+++++|++++... .+..+.+ .||||+|+..|+.+++++|+++++++.. ..|..|.||||+|+ .+|+.+++
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 999999999999986421 1222223 8999999999999999999999998632 26788999999999 99999999
Q ss_pred HHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 247 (491)
Q Consensus 183 ~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~ 247 (491)
++|++.|++ |.||||+|+..|+.+++++|++ .|++++..|. +++.|...+..
T Consensus 216 ~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~-~ga~~~~~~~----~l~~A~~~g~~ 267 (376)
T 2aja_A 216 NFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIAR-HVNRLKEMHD----AFKLSNPDGVF 267 (376)
T ss_dssp HHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHH-HHHHHHHHHT----TTTTTSSSSCC
T ss_pred HHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHh-cCcccccccH----HHHHHHHCCCh
Confidence 999997643 8999999999999999999998 6888776653 45555544443
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.7e-24 Score=195.40 Aligned_cols=146 Identities=18% Similarity=0.118 Sum_probs=77.3
Q ss_pred CHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCH----HHHHHHHhCCcccccccCCCCCCHHHHHH
Q 011183 100 TPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMAV 174 (491)
Q Consensus 100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa 174 (491)
++|+.|+..|+.+.++.++..+. +..+ ..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||+|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF 83 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 44555555555555555544321 1122 3455555555555543 3555555555554 444555555555555
Q ss_pred hCCC------HHHHHHHHhcCcccccCCCCCCC-hHHHHHHHcC-----cHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183 175 KGQS------CEVVKLLLEADAAIVMLPDKFGN-TALHVATRKK-----RTEIVTELLSLPDTNVNALTRDHKTALDIAE 242 (491)
Q Consensus 175 ~~~~------~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A~~~~-----~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~ 242 (491)
..++ .+++++|+++|++ +|.+|..|+ ||||+|+..+ +.+++++|++..|++++.+|..|+||||+|.
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 5443 3556666666665 555666666 6666666532 2345566655456666666666666666666
Q ss_pred hCCCchhh
Q 011183 243 GLPSSEEA 250 (491)
Q Consensus 243 ~~~~~~~~ 250 (491)
..+..+.+
T Consensus 163 ~~~~~~~v 170 (186)
T 3t8k_A 163 RCQKPIAL 170 (186)
T ss_dssp TTTCHHHH
T ss_pred HcCCHHHH
Confidence 55554433
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=9e-23 Score=170.91 Aligned_cols=125 Identities=40% Similarity=0.623 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
+|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 366666666666666666666665544 4455666666666666666666666666666655 4455556666666666
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc
Q 011183 108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 156 (491)
.|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++|+
T Consensus 78 ~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 78 NGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred cChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 6666666666655 33445555556666666666666666666555544
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.3e-22 Score=169.98 Aligned_cols=126 Identities=43% Similarity=0.652 Sum_probs=88.1
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183 63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142 (491)
Q Consensus 63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~ 142 (491)
+|.||||.|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence 3677777777777777777777777765 45566777777777777777777777765 445566666677777777777
Q ss_pred CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191 (491)
Q Consensus 143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~ 191 (491)
|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7777777777776665 55566677777777777777777777766653
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=4.8e-23 Score=175.87 Aligned_cols=123 Identities=28% Similarity=0.383 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
.|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF 89 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 345555555555555555555555433 3444555555555555555555555555555554 3444455555555555
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 011183 108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 154 (491)
.|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++.
T Consensus 90 ~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 90 IGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred cCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 5555555555544 333444455555555555555555555555443
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=1e-22 Score=173.88 Aligned_cols=126 Identities=25% Similarity=0.379 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183 61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140 (491)
Q Consensus 61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 140 (491)
...|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHH
Confidence 445667777777777777777777777776 55667777777777777777777777766 4556666777777777777
Q ss_pred HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183 141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189 (491)
Q Consensus 141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~ 189 (491)
..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 777777777777776665 556667777777777777777777776654
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=4.1e-23 Score=194.75 Aligned_cols=111 Identities=25% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183 27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 106 (491)
Q Consensus 27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 106 (491)
.+|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC--CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 345555555555555555555555 332 34455555555555555555555555555555553222244555555555
Q ss_pred HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 011183 107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141 (491)
Q Consensus 107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~ 141 (491)
..|+.+++++|++. +.+++..|..|.||||+|+.
T Consensus 120 ~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 120 GYVRPEVVEALVEL-GADIEVEDERGLTALELARE 153 (244)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred HcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Confidence 55555555555554 34445555555555555553
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=5.4e-23 Score=184.98 Aligned_cols=142 Identities=22% Similarity=0.229 Sum_probs=107.8
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183 25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 104 (491)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 104 (491)
.|.+|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 45677888888888888888888888 544 566788888888888888888888888888888743333778888888
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183 105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184 (491)
Q Consensus 105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~ 184 (491)
|+..|+.+++++|++. +.+++..|.+|.||||+|+..++ ...+.++|++|++.|..+++++
T Consensus 117 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 117 AAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHH
Confidence 8888888888888877 56677778888888888876432 1345677777777777777777
Q ss_pred HHhc
Q 011183 185 LLEA 188 (491)
Q Consensus 185 Ll~~ 188 (491)
|.++
T Consensus 178 L~~~ 181 (183)
T 3deo_A 178 LEGQ 181 (183)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 7653
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=5.7e-23 Score=175.54 Aligned_cols=127 Identities=31% Similarity=0.430 Sum_probs=90.6
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183 24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 103 (491)
Q Consensus 24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 103 (491)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 4577777777777777777777777776654 4566777777777777777777777777777775 556667777777
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 011183 104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154 (491)
Q Consensus 104 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 154 (491)
+|+..|+.+++++|++. +.+++..|.+|.||||+|+..+..+++++|.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 77777777777777766 555666777777777777776666666655544
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=3.2e-22 Score=179.93 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=133.8
Q ss_pred HHcCCHHHHHHHHhccCccc---------cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 37 ADKGHIEVVNELLKYSTKEG---------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 37 a~~g~~~~v~~Ll~~~~~~~---------l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
++.|..+.+++|++.+.... ....+..|.||||.|+..|+.++++.|++ ++++ +..|..|+||||+|+.
T Consensus 8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~ 85 (183)
T 3deo_A 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG 85 (183)
T ss_dssp EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHH
T ss_pred HHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHH
Confidence 44455555666664432211 11235578999999999999999999999 7776 6788999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183 108 RGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll 186 (491)
.|+.+++++|++. +.+++..| .+|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|++.++
T Consensus 86 ~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~-------- 155 (183)
T 3deo_A 86 LGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-------- 155 (183)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH--------
T ss_pred cCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc--------
Confidence 9999999999988 55677677 88999999999999999999999999987 7789999999999986321
Q ss_pred hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
...+.+||++|+..|..+++++|.+
T Consensus 156 ----------~~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 156 ----------TTPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp ----------TCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CcccccHHHHHHHcCHHHHHHHHHH
Confidence 2357899999999999999999876
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.7e-22 Score=189.13 Aligned_cols=167 Identities=21% Similarity=0.209 Sum_probs=136.6
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
.+.+++.+++..|+.+.+..+...+ ...+..|.||||.|+..|+.++++.|++ ++++ +..|..|.||||+|+.
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~ 86 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG 86 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSC-----HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHH
T ss_pred CCccHHHHHHHcCCCcccccccccc-----cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHH
Confidence 3455555666666555444333322 1234568999999999999999999999 8776 6788999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183 108 RGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186 (491)
Q Consensus 108 ~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll 186 (491)
.|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..+
T Consensus 87 ~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~--------- 155 (244)
T 3ui2_A 87 LGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL--------- 155 (244)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH---------
Confidence 9999999999988 56677677 78999999999999999999999999987 778999999999998521
Q ss_pred hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
.+..+.||||+|+..|+.+++++|++
T Consensus 156 ---------~~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 156 ---------KTTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp ---------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence 23568999999999999999999987
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=2.5e-22 Score=171.50 Aligned_cols=111 Identities=29% Similarity=0.347 Sum_probs=49.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183 129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208 (491)
Q Consensus 129 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~ 208 (491)
|.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHH
Confidence 344444444444444444444444444433 33344444444444444444444444444444 3344444444444444
Q ss_pred HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242 (491)
Q Consensus 209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~ 242 (491)
..++.+++++|++ .|++++.+|..|.||+|+|.
T Consensus 85 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 85 KNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCC
T ss_pred HcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHh
Confidence 4444444444444 34444444444444444443
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=190.58 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCcccc------cCCCCCcHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCCC
Q 011183 98 NATPLVSAATRGHTAVVNELLSKDGGLLEI------SRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQT 168 (491)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t 168 (491)
+.++|+.|+..|+.+.++.|++.+ .+++. .+..|.||||+|+.. |+.+++++|+++++++ +..|..|+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 446788888888888888888764 44444 577888999998886 7888999999888886 677888899
Q ss_pred HHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 011183 169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS 246 (491)
Q Consensus 169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~ 246 (491)
|||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .|++ .|.||||+|+..+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCC
Confidence 99999998999999999988888 77888889999999998888999888888 5665 47889998887654
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=3.8e-22 Score=185.04 Aligned_cols=132 Identities=25% Similarity=0.326 Sum_probs=76.4
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCCC
Q 011183 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNAT 100 (491)
Q Consensus 22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~~~~g~t 100 (491)
++..|.+|.||||+|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++ ++++ +..|..|.|
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t 142 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT 142 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence 444555666666666666666666666665544 455566666666666666666666666666 5554 455566666
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcc
Q 011183 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 157 (491)
Q Consensus 101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~ 157 (491)
|||+|+..|+.+++++|++. +++++..|.+|.||||+|+..|+.++++.|++.+..
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 66666666666666666655 444555666666666666666666666666655544
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.2e-21 Score=164.01 Aligned_cols=110 Identities=26% Similarity=0.407 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183 26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 105 (491)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 105 (491)
+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC--cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 34455666666666666666666665443 4455555666666666666666666666665554 44555555666666
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183 106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139 (491)
Q Consensus 106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A 139 (491)
+..|+.+++++|++. +.+++..|.+|.||||+|
T Consensus 81 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred HHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence 666666666555555 344555555555555555
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=190.24 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCccc-----CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcccccCCC
Q 011183 60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSN 131 (491)
Q Consensus 60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~-----~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~~~~d~~ 131 (491)
....+.++||.|+..|+.+.++.|++.++++... .+..|.||||+|+.. |+.+++++|++. +.+++..|.+
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~ 225 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAAD 225 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTT
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCC
Confidence 3444668999999999999999999999998442 688999999999997 899999999998 6678889999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC
Q 011183 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211 (491)
Q Consensus 132 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~ 211 (491)
|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|++++++ .|.||||+|+..|
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV 297 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence 999999999999999999999999997 78899999999999999999999999999987 4899999999988
Q ss_pred cH
Q 011183 212 RT 213 (491)
Q Consensus 212 ~~ 213 (491)
+.
T Consensus 298 ~~ 299 (301)
T 2b0o_E 298 IS 299 (301)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=8.2e-22 Score=182.82 Aligned_cols=134 Identities=27% Similarity=0.323 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCCHHHHHHh
Q 011183 97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVK 175 (491)
Q Consensus 97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~ 175 (491)
.|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence 344455555544555555444443 233444444555555555555555555555554 3333 4445555555555555
Q ss_pred CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 011183 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 234 (491)
Q Consensus 176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G 234 (491)
.|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus 150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 5555555555555555 44555555555555555555555555555 455444444433
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=5e-21 Score=160.23 Aligned_cols=111 Identities=27% Similarity=0.330 Sum_probs=92.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183 129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208 (491)
Q Consensus 129 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~ 208 (491)
+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 456778888888888888888888888776 66788888888888888888888888888888 7778888888888888
Q ss_pred HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242 (491)
Q Consensus 209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~ 242 (491)
..++.+++++|++ .|++++.+|..|.||+|+|.
T Consensus 82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence 8888888888888 68888888888888888884
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=7.2e-21 Score=182.84 Aligned_cols=120 Identities=26% Similarity=0.342 Sum_probs=62.5
Q ss_pred CHHHHHHHcCCHHHHHHHHhcCCCc-----ccccCCCCCcHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCCCHHH
Q 011183 100 TPLVSAATRGHTAVVNELLSKDGGL-----LEISRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQTALH 171 (491)
Q Consensus 100 tpL~~A~~~g~~~~v~~LL~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh 171 (491)
++|+.|+..|+.+.+..+++.+... ++..|..|.||||+|+.. |+.+++++|+++++++ +..|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence 4555555555555555555443221 222344555555555555 4555555555555554 444555555555
Q ss_pred HHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221 (491)
Q Consensus 172 ~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~ 221 (491)
+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555555 44555555555555555555555555554
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=3.2e-20 Score=178.28 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=147.5
Q ss_pred cCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 011183 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138 (491)
Q Consensus 59 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~ 138 (491)
..|..+.++|+.+...|+..+.+++...-+.........+... ....+.-..+++...........+....++|+.
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 3577888999999999998887776554333211011111111 111111222233333222222222334579999
Q ss_pred HHHcCCHHHHHHHHhCCcccc-----cccCCCCCCHHHHHHhC---CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc
Q 011183 139 AARQGHVDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 210 (491)
Q Consensus 139 A~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~Aa~~---~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~ 210 (491)
|+..|+.+.++.+++.+++.. +..|..|+||||+|+.. ++.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHc
Confidence 999999999999999998863 34488999999999998 899999999999999 889999999999999999
Q ss_pred CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183 211 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 264 (491)
Q Consensus 211 ~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 264 (491)
|+.+++++|++ .|++++.+|..|+||||+|+..++. +++++|+++|+.+
T Consensus 216 g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 216 DNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSGR 264 (278)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTTC
T ss_pred CCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCCC
Confidence 99999999999 8999999999999999999998764 4788888888754
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.6e-19 Score=179.74 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHHc-CcHHHHHHHHhcCCCCcccCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHH
Q 011183 61 NRSGFDPLHIAAVQ-GHHAIVQVLLDHDPSLSQTTG--PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137 (491)
Q Consensus 61 ~~~g~TpLh~A~~~-g~~~iv~~Ll~~~~~l~~~~~--~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh 137 (491)
+..+.|+||.|+.. |+.++++.|+++|+++ +..+ ..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence 33456777777777 7777777777777776 3444 6677777777777777777777776 5566777777778888
Q ss_pred HHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCccc--ccCCCCCCChHHHHHHHc
Q 011183 138 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI--VMLPDKFGNTALHVATRK 210 (491)
Q Consensus 138 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~--~~~~d~~G~TpLh~A~~~ 210 (491)
+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|++.+... ....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 888777888888888777776 667777888888888888888887777665321 223455677777777654
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=2.9e-19 Score=177.90 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=114.1
Q ss_pred CCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCcccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHH
Q 011183 94 TGPSNATPLVSAATR-GHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 170 (491)
Q Consensus 94 ~~~~g~tpL~~A~~~-g~~~~v~~LL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L 170 (491)
.+..+.||||.|+.. |+.++++.|++. +.+++..+ .+|.||||+|+..|+.+++++|++++.++ +..|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 334567899999999 999999999987 56677777 88999999999999999999999999987 78899999999
Q ss_pred HHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC--CCCCcccccCCCCCHHHHHhhCC
Q 011183 171 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--PDTNVNALTRDHKTALDIAEGLP 245 (491)
Q Consensus 171 h~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~--~g~~~~~~d~~G~t~L~~A~~~~ 245 (491)
|+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..++.+++++|++. .+.+....+..+.|+++++....
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999 788999999999999999999999999862 23455567788899999987654
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.6e-19 Score=149.02 Aligned_cols=109 Identities=38% Similarity=0.481 Sum_probs=96.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHH
Q 011183 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206 (491)
Q Consensus 127 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~ 206 (491)
..|.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 46788999999999999999999999998886 67788999999999999999999999999988 78889999999999
Q ss_pred HHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 011183 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238 (491)
Q Consensus 207 A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L 238 (491)
|+..++.+++++|++ .|+++|.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence 999999999999998 7999999999998874
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=4.6e-19 Score=140.44 Aligned_cols=91 Identities=47% Similarity=0.685 Sum_probs=61.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC
Q 011183 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211 (491)
Q Consensus 132 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~ 211 (491)
|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|++.|++ ++.+|.+|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence 666777777777777777777766665 55666677777777777777777777777666 5666667777777777777
Q ss_pred cHHHHHHHhcCCCC
Q 011183 212 RTEIVTELLSLPDT 225 (491)
Q Consensus 212 ~~~iv~~Ll~~~g~ 225 (491)
+.+++++|++ .|+
T Consensus 80 ~~~~~~~Ll~-~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLE-AGA 92 (93)
T ss_dssp CHHHHHHHHH-TTC
T ss_pred CHHHHHHHHH-cCC
Confidence 7777777766 444
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=6.1e-19 Score=183.57 Aligned_cols=130 Identities=24% Similarity=0.260 Sum_probs=85.2
Q ss_pred CHHHHHHHcCCHHHHHHHHhcCCCccccc------CCCCCcHHHHHHH---cCCHHHHHHHHhCCcccccccCCCCCCHH
Q 011183 100 TPLVSAATRGHTAVVNELLSKDGGLLEIS------RSNGKNALHFAAR---QGHVDVVKALLSKDPQLARRTDKKGQTAL 170 (491)
Q Consensus 100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L 170 (491)
+.||.|+..|+.+.++.|++.+ .+++.. |..|.||||+|+. .|+.+++++|+++|+++ +..|..|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHH
Confidence 4577777777777777777663 344433 6667777777755 67777777777777765 56677777777
Q ss_pred HHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCC
Q 011183 171 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 233 (491)
Q Consensus 171 h~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~ 233 (491)
|+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++++..+.+
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~h 272 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAGTFAFPLH 272 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHH-TCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCCCcce
Confidence 777777777777777777777 66677777777777777777777777777 67776654333
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=6.7e-19 Score=139.51 Aligned_cols=91 Identities=38% Similarity=0.582 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183 28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 107 (491)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 107 (491)
+|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 467777777777777777777776654 5666777777777777777777777777777776 5666777777777777
Q ss_pred cCCHHHHHHHHhcC
Q 011183 108 RGHTAVVNELLSKD 121 (491)
Q Consensus 108 ~g~~~~v~~LL~~~ 121 (491)
.|+.+++++|++.+
T Consensus 78 ~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 78 NGHLEVVKLLLEAG 91 (93)
T ss_dssp TTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcC
Confidence 77777777777653
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=4.4e-19 Score=184.65 Aligned_cols=137 Identities=25% Similarity=0.303 Sum_probs=101.3
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCCccc-----CCCCCCCHHHHHHH---cCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAAT---RGHTAVVNELLSKDGGLLEISRSNGKNA 135 (491)
Q Consensus 64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~-----~~~~g~tpL~~A~~---~g~~~~v~~LL~~~~~~~~~~d~~g~tp 135 (491)
..+.||.|+..|+.++++.|+++|++++.. .|..|.||||+|+. .|+.+++++|++. +++++..|.+|.||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcH
Confidence 346788888888888888888888876322 26778888888866 7888888888887 56778888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHH
Q 011183 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209 (491)
Q Consensus 136 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~ 209 (491)
||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++. + .||+|.+..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~------~~~~h~~~~ 276 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGT-F------AFPLHVDYS 276 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-C------CCcceeecc
Confidence 88888888888888888888886 677888888888888888888888888888873 2 267777653
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=8.5e-19 Score=144.64 Aligned_cols=108 Identities=30% Similarity=0.428 Sum_probs=76.8
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183 24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 103 (491)
Q Consensus 24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 103 (491)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 3567777777777777777777777776654 5566777777777777777777777777777776 556667777777
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183 104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNA 135 (491)
Q Consensus 104 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp 135 (491)
+|+..|+.+++++|+++ +++++..+..|.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAK-GADVNARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence 77777777777777766 45566666666665
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=5.4e-17 Score=132.79 Aligned_cols=96 Identities=22% Similarity=0.319 Sum_probs=66.5
Q ss_pred hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 011183 19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 98 (491)
Q Consensus 19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g 98 (491)
+......|.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|
T Consensus 14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g 90 (110)
T 2zgd_A 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFG 90 (110)
T ss_dssp --------CCHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCC
Confidence 444556677777888888888888888888776654 5666777778888888878888888887777776 5667777
Q ss_pred CCHHHHHHHcCCHHHHHHH
Q 011183 99 ATPLVSAATRGHTAVVNEL 117 (491)
Q Consensus 99 ~tpL~~A~~~g~~~~v~~L 117 (491)
.||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 7777777777777777655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=2.2e-16 Score=129.09 Aligned_cols=93 Identities=37% Similarity=0.463 Sum_probs=73.1
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHH
Q 011183 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204 (491)
Q Consensus 125 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpL 204 (491)
....|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 3456677888888888888888888888888776 66678888888888888888888888888887 677888888888
Q ss_pred HHHHHcCcHHHHHHH
Q 011183 205 HVATRKKRTEIVTEL 219 (491)
Q Consensus 205 h~A~~~~~~~iv~~L 219 (491)
|+|+..++.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 888888888888765
No 115
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.15 E-value=2.8 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhheeeEE
Q 011183 425 EWAAILVTVVGGLIMAGVLGTMTYYVV 451 (491)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (491)
...+|...++|++..+.++....++++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 345677788887766666655555444
No 116
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.48 E-value=2 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhheeeEE
Q 011183 425 EWAAILVTVVGGLIMAGVLGTMTYYVV 451 (491)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (491)
...+|...+++++..+.+++...+|++
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHh
Confidence 345677778887766666655555544
No 117
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.06 E-value=19 Score=34.29 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011183 396 VINKLMWLASVCTSVAFIASSYI 418 (491)
Q Consensus 396 ~~~~~~~~~~~~~~~af~~~~~~ 418 (491)
..+.|..++.+++..+|++|+|=
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyG 300 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYG 300 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567888888899999999984
No 118
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=35.01 E-value=25 Score=33.76 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011183 395 EVINKLMWLASVCTSVAFIASSY 417 (491)
Q Consensus 395 ~~~~~~~~~~~~~~~~af~~~~~ 417 (491)
...+.|..++.+++..+|++|+|
T Consensus 301 ~imk~LTiit~IflP~T~IaGiy 323 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIY 323 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566888999999999999988
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=26.83 E-value=23 Score=33.82 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=81.9
Q ss_pred cCCCCCChHHHHHHHcCcHHHHHHHHhc--CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--ccccCCCCCc
Q 011183 59 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL--LEISRSNGKN 134 (491)
Q Consensus 59 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--~~~~d~~g~t 134 (491)
..|..|+..+.-....++.+....+++. |--..-..+..|.-.+..+......+-...+++.-... .-..|.+|..
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 147 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhH
Confidence 4677788877777778877766666653 11112234555655566665555554444444321111 1134555555
Q ss_pred HHHHHHHcCCHHHHHHHHhCCc-cc-ccccCCCCCCHHHHHHhCCCHH----HHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183 135 ALHFAARQGHVDVVKALLSKDP-QL-ARRTDKKGQTALHMAVKGQSCE----VVKLLLEADAAIVMLPDKFGNTALHVAT 208 (491)
Q Consensus 135 pLh~A~~~g~~~iv~~Ll~~~~-~~-~~~~d~~g~t~Lh~Aa~~~~~~----iv~~Ll~~~~~~~~~~d~~G~TpLh~A~ 208 (491)
.+......+..+..+.+++.-. .. .-..+..|...+.-+......+ +++.|...-. .-..|..|+-.+..+.
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~--~L~~d~~Gn~ViQ~~l 225 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE--QLVQDQYGNYVIQHVL 225 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHH--HHHTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHH--hcCCCchHHHHHHHHH
Confidence 5555544444333333332211 00 0122344554554444443332 3333322211 2236888888888888
Q ss_pred HcCcHHHHHHHhc
Q 011183 209 RKKRTEIVTELLS 221 (491)
Q Consensus 209 ~~~~~~iv~~Ll~ 221 (491)
..+.++..+.+++
T Consensus 226 ~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 226 EHGRPEDKSKIVS 238 (351)
T ss_dssp HHSCHHHHHHHHH
T ss_pred HhCchhhHHHHHH
Confidence 8887776666665
No 120
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=24.20 E-value=1.3e+02 Score=31.46 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------cchhhHHHHHHHHHHHHHHHhhhe-eeEEeccchhhhh
Q 011183 393 VVEVINKLMWLASVCTSVAFIASSYIVVGRR-----------HEWAAILVTVVGGLIMAGVLGTMT-YYVVKSKRVRSIR 460 (491)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~af~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 460 (491)
...-+++.+|++.+-+.+++....+..+++. ..|..++.|++.+++...+++.+. ||. +...++.|
T Consensus 357 ~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyT--s~~~~PV~ 434 (766)
T 4a01_A 357 IEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYYT--SNAYSPVQ 434 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchHH
Confidence 3455566777776666666555566666532 123445566666666655555554 333 44455556
Q ss_pred hhccccc
Q 011183 461 KREKNAR 467 (491)
Q Consensus 461 ~~~~~~~ 467 (491)
+..+.++
T Consensus 435 ~IA~aS~ 441 (766)
T 4a01_A 435 DVADSCR 441 (766)
T ss_dssp HHHHHGG
T ss_pred HHHHHhC
Confidence 6555553
No 121
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.21 E-value=83 Score=20.91 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhee
Q 011183 424 HEWAAILVTVVGGLIMAGVLGTMTY 448 (491)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (491)
..|..|++.+++++.+..++..++|
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777666555544
No 122
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.13 E-value=1.3e+02 Score=28.66 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=17.9
Q ss_pred cccccchhhhHHHHHHHHHHhhccCCCCCCCCCcchhccccchhH
Q 011183 316 NNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360 (491)
Q Consensus 316 ~~~~~~~~~~a~liatv~f~a~~~~Pgg~~~~g~~~~~~~~~f~~ 360 (491)
.+.-+.++++|++++=.||-||+= |-+=+++|-+...+.|.+
T Consensus 300 N~imk~LTiit~IflP~T~IaGiy---GMNf~~mPel~~~~Gy~~ 341 (363)
T 2iub_A 300 NEVMKVLTIIATIFMPLTFIAGIY---GMNFEYMPELRWKWGYPV 341 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC---C--------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cccCCCCCcccCcHHHHH
Confidence 344556788888888888887540 111134565544455533
Done!