Query 011185
Match_columns 491
No_of_seqs 183 out of 1217
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 02:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 9.3E-29 3.2E-33 239.9 15.7 157 1-162 81-241 (257)
2 2i53_A Cyclin K; cell cycle, t 99.9 9.7E-28 3.3E-32 232.3 12.7 152 1-165 91-255 (258)
3 3rgf_B Cyclin-C; protein kinas 99.9 3.2E-28 1.1E-32 241.3 7.3 152 1-164 93-245 (285)
4 2pk2_A Cyclin-T1, protein TAT; 99.9 6.1E-28 2.1E-32 247.2 7.8 158 1-163 88-249 (358)
5 1zp2_A RNA polymerase II holoe 99.9 6.3E-27 2.2E-31 224.9 3.2 146 1-165 79-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 99.9 6E-24 2.1E-28 214.6 12.5 144 1-164 109-264 (323)
7 2b9r_A Human cyclin B1; cell c 99.8 4.9E-22 1.7E-26 195.1 6.5 159 1-187 88-251 (269)
8 2w96_A G1/S-specific cyclin-D1 99.8 2.7E-21 9.2E-26 189.6 9.7 147 1-169 107-265 (271)
9 2cch_B Cyclin A2, cyclin-A; co 99.8 1.5E-21 5.1E-26 190.3 7.2 156 1-185 89-250 (260)
10 1c9b_A General transcription f 99.8 2.5E-21 8.5E-26 182.2 7.8 143 1-170 55-197 (207)
11 1g3n_C V-cyclin; cyclin-depend 99.8 6.1E-21 2.1E-25 185.8 8.6 142 1-163 101-250 (257)
12 3g33_B CCND3 protein; Ser/Thr 99.8 5.2E-21 1.8E-25 191.8 7.0 143 1-165 121-271 (306)
13 2f2c_A Cyclin homolog, V-cycli 99.8 6.3E-20 2.2E-24 178.3 7.7 136 1-162 102-249 (254)
14 1ais_B TFB TFIIB, protein (tra 99.7 7.1E-18 2.4E-22 157.6 9.4 135 1-161 59-195 (200)
15 1w98_B Cyclin E, G1/S-specific 99.7 1.6E-18 5.6E-23 171.5 4.6 133 1-163 101-244 (283)
16 1f5q_B Gamma herpesvirus cycli 99.7 1.1E-16 3.8E-21 156.8 9.1 137 1-162 99-243 (252)
17 3k7a_M Transcription initiatio 99.6 2.2E-17 7.5E-22 168.1 0.1 134 1-160 176-321 (345)
18 4bbr_M Transcription initiatio 99.1 9.5E-12 3.2E-16 127.1 -0.9 135 1-161 176-322 (345)
19 1ais_B TFB TFIIB, protein (tra 96.8 0.0047 1.6E-07 57.1 9.5 87 70-160 12-98 (200)
20 1c9b_A General transcription f 96.4 0.012 3.9E-07 54.8 9.2 88 70-161 8-95 (207)
21 1zp2_A RNA polymerase II holoe 95.4 0.046 1.6E-06 51.9 8.6 90 72-162 33-128 (235)
22 2b9r_A Human cyclin B1; cell c 94.6 0.098 3.4E-06 50.8 8.6 89 73-162 44-132 (269)
23 3rgf_B Cyclin-C; protein kinas 94.5 0.1 3.5E-06 51.3 8.6 90 72-162 48-151 (285)
24 4bbr_M Transcription initiatio 94.4 0.068 2.3E-06 54.4 7.2 91 67-161 126-216 (345)
25 1jkw_A Cyclin H; cell cycle, c 94.3 0.2 6.7E-06 50.3 10.2 87 73-163 63-158 (323)
26 2f2c_A Cyclin homolog, V-cycli 94.2 0.14 4.9E-06 49.1 8.7 92 73-165 58-149 (254)
27 1g3n_C V-cyclin; cyclin-depend 94.2 0.12 4E-06 49.8 8.0 90 73-163 57-146 (257)
28 3g33_B CCND3 protein; Ser/Thr 94.0 0.14 4.9E-06 50.9 8.5 94 73-167 77-170 (306)
29 2w96_A G1/S-specific cyclin-D1 93.7 0.15 5.3E-06 49.3 7.9 91 73-164 63-153 (271)
30 2cch_B Cyclin A2, cyclin-A; co 93.7 0.12 4E-06 49.9 7.0 89 73-162 45-133 (260)
31 3k7a_M Transcription initiatio 93.2 0.04 1.4E-06 55.8 2.9 88 69-160 128-215 (345)
32 1w98_B Cyclin E, G1/S-specific 92.9 0.24 8.1E-06 48.6 7.8 91 73-164 56-147 (283)
33 2ivx_A Cyclin-T2; transcriptio 92.8 0.23 7.7E-06 47.6 7.5 55 72-127 36-90 (257)
34 2i53_A Cyclin K; cell cycle, t 92.7 0.24 8.3E-06 47.2 7.5 55 72-127 46-100 (258)
35 2pk2_A Cyclin-T1, protein TAT; 91.8 0.24 8.3E-06 50.5 6.7 55 72-127 43-97 (358)
36 1f5q_B Gamma herpesvirus cycli 91.5 0.37 1.3E-05 46.8 7.3 92 73-165 55-146 (252)
37 3m03_A ORC6, origin recognitio 62.6 24 0.00082 29.9 7.3 54 105-161 40-93 (95)
38 2r7g_A PP110, retinoblastoma-a 53.2 78 0.0027 32.4 10.6 83 46-128 167-278 (347)
39 2pmi_B PHO85 cyclin PHO80, ami 47.1 50 0.0017 33.1 7.9 90 71-163 78-170 (293)
40 4ell_A Retinoblastoma-associat 24.1 1.6E+02 0.0056 30.7 7.5 54 75-128 287-342 (411)
41 4elj_A Retinoblastoma-associat 21.3 2.7E+02 0.0091 30.9 8.8 84 46-129 474-588 (656)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.96 E-value=9.3e-29 Score=239.94 Aligned_cols=157 Identities=32% Similarity=0.596 Sum_probs=140.7
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 80 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~ 80 (491)
||||||+||+|++++||+.+++.+.++..|. +...+..|+.++++|+.||+.||++|+|+|.+++||.||.+|++.
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~ 156 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL----LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQL 156 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC----CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCCC----CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHH
Confidence 6899999999999999999999998766543 222467899889999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhhc-CCccccccChHHHHHHHHHHHHHHhCcCCCCC-Ccccchhcc--CCCHHHHHHHHHHHH
Q 011185 81 FKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQML 156 (491)
Q Consensus 81 L~~~~~~L~qlAw~fLnDSl-~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~-~~~~W~e~L--gvt~eqL~eI~~eIL 156 (491)
++.. ..+.++||+|+++++ .+++|+.|+|++||+||||+|+.+++..+|.. ++.+||..| ++++++|.+|+.+|+
T Consensus 157 l~~~-~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~ 235 (257)
T 2ivx_A 157 VRAS-KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFL 235 (257)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHH
Confidence 9876 479999999999998 58999999999999999999999999988863 346799988 799999999999999
Q ss_pred HHHhhC
Q 011185 157 ELYEQN 162 (491)
Q Consensus 157 eLY~~~ 162 (491)
++|...
T Consensus 236 ~~~~~~ 241 (257)
T 2ivx_A 236 QILEKT 241 (257)
T ss_dssp HHHHTS
T ss_pred HHHHhC
Confidence 999753
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.95 E-value=9.7e-28 Score=232.29 Aligned_cols=152 Identities=40% Similarity=0.726 Sum_probs=133.2
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHH----HHHHHHHHHHHHHHHHcCCcccccCcHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYE----QQKELILLGERVVLATLGFDLNVHHPYKPLVE 76 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Ye----q~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~ 76 (491)
||||||+||+|++++||+.+++.++. +..|. ..+++|+.||+.||++|+|+|.+++||.||.+
T Consensus 91 L~lA~K~eE~~~~l~d~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~ 157 (258)
T 2i53_A 91 LFLAGKVEETPKKCKDIIKTARSLLN-------------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLK 157 (258)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHSC-------------HHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHccccccccHHHHHHHHHHHhc-------------hhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHH
Confidence 68999999999999999999886642 22331 24789999999999999999999999999999
Q ss_pred HHHHhcccHH---HHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCC----Ccccchhcc--CCCHHH
Q 011185 77 AIKKFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD----GDKVWWQEF--DVTPRQ 147 (491)
Q Consensus 77 yLk~L~~~~~---~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~----~~~~W~e~L--gvt~eq 147 (491)
|++.++.+.. .+.+.||+|+++++++++|+.|+|++||+||||+|+.+++..+|.. ...+||..| ++++++
T Consensus 158 ~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 237 (258)
T 2i53_A 158 YAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDV 237 (258)
T ss_dssp HHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHH
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHH
Confidence 9999987642 6899999999999999999999999999999999999999877642 235799998 999999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 011185 148 LEEVSNQMLELYEQNRVP 165 (491)
Q Consensus 148 L~eI~~eILeLY~~~r~~ 165 (491)
|.+|+.+|+++|...+..
T Consensus 238 l~~~~~~il~ly~~~~~~ 255 (258)
T 2i53_A 238 LEDICHQILDLYSQGKQQ 255 (258)
T ss_dssp HHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999999876553
No 3
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.2e-28 Score=241.32 Aligned_cols=152 Identities=29% Similarity=0.465 Sum_probs=131.5
Q ss_pred CEEeeccCCCCC-ChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEETPR-PLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEtpr-kLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||+++ .++||+.+++.+....... + .+..|+..+++|+.||++||++|+|+|.++|||.||.+|++
T Consensus 93 LfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~----~--~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~ 166 (285)
T 3rgf_B 93 VFLASKVEEFGVVSNTRLIAAATSVLKTRFSY----A--FPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQ 166 (285)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT----T--CCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHH
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHcccccc----c--CchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHH
Confidence 689999999998 5899999998765322110 1 12234445789999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHHHHHHHHH
Q 011185 80 KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELY 159 (491)
Q Consensus 80 ~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~~eILeLY 159 (491)
.++.. ..+.++||+|++|++++++|+.|+|++||+||||+|+.+++... .+||..|++++++|.+|+.+|+++|
T Consensus 167 ~l~~~-~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~-----~~W~~~~~~~~~~l~~~~~~il~ly 240 (285)
T 3rgf_B 167 DMGQE-DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA-----RQWFAELSVDMEKILEIIRVILKLY 240 (285)
T ss_dssp HHTCH-HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC-----HHHHHTSCSCHHHHHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh-----hhHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99865 47999999999999999999999999999999999999988642 4799999999999999999999999
Q ss_pred hhCCC
Q 011185 160 EQNRV 164 (491)
Q Consensus 160 ~~~r~ 164 (491)
..++.
T Consensus 241 ~~~~~ 245 (285)
T 3rgf_B 241 EQWKN 245 (285)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 98765
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.94 E-value=6.1e-28 Score=247.24 Aligned_cols=158 Identities=32% Similarity=0.583 Sum_probs=140.6
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 80 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~ 80 (491)
||||||+||+|++++||+.+++.++++..|.. +..+..|+.++++|+.||++||++|+|+|.+++||.||.+|++.
T Consensus 88 LfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~----~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~ 163 (358)
T 2pk2_A 88 LFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQL 163 (358)
T ss_dssp HHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCC----CTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHH
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHhccccccc----cccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHH
Confidence 69999999999999999999999887665432 22467898889999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhhc-CCccccccChHHHHHHHHHHHHHHhCcCCCCC-Ccccchhcc--CCCHHHHHHHHHHHH
Q 011185 81 FKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD-GDKVWWQEF--DVTPRQLEEVSNQML 156 (491)
Q Consensus 81 L~~~~~~L~qlAw~fLnDSl-~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~-~~~~W~e~L--gvt~eqL~eI~~eIL 156 (491)
++.. ..+.++||+|+++++ .+++|+.|+|++||+||||+|+.+++..+|.. .+.+||..| +|++++|.+|+.+|+
T Consensus 164 l~~~-~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il 242 (358)
T 2pk2_A 164 VRAS-KDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFL 242 (358)
T ss_dssp TTCC-HHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHH
Confidence 9876 479999999999999 58899999999999999999999999988863 246799998 689999999999999
Q ss_pred HHHhhCC
Q 011185 157 ELYEQNR 163 (491)
Q Consensus 157 eLY~~~r 163 (491)
++|....
T Consensus 243 ~~y~~~~ 249 (358)
T 2pk2_A 243 QILEKTP 249 (358)
T ss_dssp HHTTTCT
T ss_pred HHHHhCc
Confidence 9997643
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.3e-27 Score=224.87 Aligned_cols=146 Identities=22% Similarity=0.328 Sum_probs=126.9
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 80 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~ 80 (491)
||||||+||+|++++||+.+++.+.. + .|...+++|+.||++||++|+|+|.+++|+.||.+|++.
T Consensus 79 L~lA~K~Ee~~~~l~d~~~~~~~~~~-~-------------~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~ 144 (235)
T 1zp2_A 79 IYLSCKVEECPVHIRTICNEANDLWS-L-------------KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD 144 (235)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHTTCC-C-------------SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHT
T ss_pred HHHHhccccCcccHHHHHHHHHHHcc-c-------------hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHH
Confidence 68999999999999999999876641 0 011236889999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHHHHHHHHHh
Q 011185 81 FKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYE 160 (491)
Q Consensus 81 L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~~eILeLY~ 160 (491)
++.. ..+.+.||+|+++++++++|+.|+|++||+||||+|+.+++..+|.. ..||+ ++++++|.+|+.+|+++|.
T Consensus 145 ~~~~-~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~--~~~~~--~~~~~~i~~~~~~i~~ly~ 219 (235)
T 1zp2_A 145 GIIN-QKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKL--LDLIK--STDAFKVILCVQRIISIYY 219 (235)
T ss_dssp TSSC-HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHH--HHHCC--HHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-HHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCC--cchhh--cCCHHHHHHHHHHHHHHHh
Confidence 8876 47899999999999999999999999999999999999988765531 35775 9999999999999999998
Q ss_pred hCCCC
Q 011185 161 QNRVP 165 (491)
Q Consensus 161 ~~r~~ 165 (491)
.+...
T Consensus 220 ~~~~~ 224 (235)
T 1zp2_A 220 FEDIE 224 (235)
T ss_dssp SSSHH
T ss_pred hCCcC
Confidence 86653
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.90 E-value=6e-24 Score=214.57 Aligned_cols=144 Identities=26% Similarity=0.316 Sum_probs=122.2
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 80 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~ 80 (491)
||||||+||+|+++++|+.++ +.+ +..+..++++|+.||++||++|+|+|.++|||.||.+|+..
T Consensus 109 LfLA~K~EE~~~~l~d~v~~~-----~~~----------p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~ 173 (323)
T 1jkw_A 109 AFLACKVDEFNVSSPQFVGNL-----RES----------PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173 (323)
T ss_dssp HHHHHHHTTCCCCHHHHGGGS-----SSC----------HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHH
T ss_pred HHHHHhhhcCCCCHHHHHHHh-----ccC----------hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHH
Confidence 689999999999999998642 111 11223468999999999999999999999999999999987
Q ss_pred hc-----c-cHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhc-cC-----CCHHHH
Q 011185 81 FK-----V-AQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQE-FD-----VTPRQL 148 (491)
Q Consensus 81 L~-----~-~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~-Lg-----vt~eqL 148 (491)
+. + ....+.+.||+|++++++|++|+.|+|++||+||||+|+..++..+|. |+.. |. ++.++|
T Consensus 174 l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~-----w~~~l~~~~~~~~~~~~l 248 (323)
T 1jkw_A 174 LKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES-----YLSESLMLKENRTCLSQL 248 (323)
T ss_dssp HHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTT-----HHHHHTTSCSSSCCTHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHH-----HHHHHhccccccccHHHH
Confidence 62 2 234689999999999999999999999999999999999999987663 8874 33 478999
Q ss_pred HHHHHHHHHHHhhCCC
Q 011185 149 EEVSNQMLELYEQNRV 164 (491)
Q Consensus 149 ~eI~~eILeLY~~~r~ 164 (491)
.+|+..|+.+|.....
T Consensus 249 ~~~~~~i~~l~~~~~~ 264 (323)
T 1jkw_A 249 LDIMKSMRNLVKKYEP 264 (323)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999999998753
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.85 E-value=4.9e-22 Score=195.08 Aligned_cols=159 Identities=25% Similarity=0.241 Sum_probs=134.5
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |++++||+.++. ..| .+++|+.||+.||++|+|+|.+++|+.||.+|++
T Consensus 88 L~iA~K~eE~~~p~~~d~~~~~~------------------~~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~ 147 (269)
T 2b9r_A 88 MFIASKYEEMYPPEIGDFAFVTD------------------NTY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASK 147 (269)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHTC------------------SSS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHhcccccCccHHHHHHHhc------------------CCC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 6899999998 889999997642 112 3689999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhcc----CCCHHHHHHHHHHH
Q 011185 80 KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQM 155 (491)
Q Consensus 80 ~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~L----gvt~eqL~eI~~eI 155 (491)
.++.+ ..+.++||+|+++++.+..++.|+|++||+||||+|+.+++.. .|+..+ |+++.+|.+|+..|
T Consensus 148 ~~~~~-~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-------~w~~~l~~~tg~~~~~l~~~~~~l 219 (269)
T 2b9r_A 148 IGEVD-VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-------EWTPTLQHYLSYTEESLLPVMQHL 219 (269)
T ss_dssp SSCCC-HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-------CSCTTHHHHSCCCSSTTTTHHHHH
T ss_pred hcCCC-HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-------CCCHHHHHHHCCCHHHHHHHHHHH
Confidence 98876 4688999999999999999999999999999999999999752 587765 99999999999999
Q ss_pred HHHHhhCCCCCCCCCccccccCCCCCCCCCCC
Q 011185 156 LELYEQNRVPQSQGSEVEGSAGGASSHRPQKT 187 (491)
Q Consensus 156 LeLY~~~r~~~~~~~~~e~~~~~~~~~~~~k~ 187 (491)
+++|.....+..+..-+.-.++....+.+++-
T Consensus 220 ~~~~~~~~~~~~~~~ai~~Ky~~~~~~~vs~~ 251 (269)
T 2b9r_A 220 AKNVVMVNQGLTKHMTVKNKYATSKHAKISTL 251 (269)
T ss_dssp HHHHHHTTTSCCSCCHHHHHTTSGGGTTGGGS
T ss_pred HHHHHHhcCCCcchHHHHHHhcchhhCcccCC
Confidence 99998766654555556667776666666633
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.84 E-value=2.7e-21 Score=189.59 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=121.9
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||+ |+++++|+.++. ..| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 107 L~iAsK~EE~~p~~~~~~~~~~~------------------~~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~ 166 (271)
T 2w96_A 107 MFVASKMKETIPLTAEKLCIYTD------------------NSI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166 (271)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHTT------------------TSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHhc------------------CCC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHH
Confidence 6899999998 999999987542 123 3689999999999999999999999999999999
Q ss_pred HhcccHH---HHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhc--------cCCCHHHH
Q 011185 80 KFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQE--------FDVTPRQL 148 (491)
Q Consensus 80 ~L~~~~~---~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~--------Lgvt~eqL 148 (491)
.++...+ .+.+.||+|+++++.+..|+.|+|++||+||||+|...++...|. ...|+.. +|+++.+|
T Consensus 167 ~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~--~~~w~~~~~~~l~~~~~v~~~~l 244 (271)
T 2w96_A 167 KMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPN--NFLSYYRLTRFLSRVIKCDPDCL 244 (271)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTT--SCGGGTTHHHHHHHHHTSCHHHH
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCC--CCCcHHHHHHHHHHHHCcCHHHH
Confidence 9877542 346789999999988888999999999999999999988754332 1346542 49999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCC
Q 011185 149 EEVSNQMLELYEQNRVPQSQG 169 (491)
Q Consensus 149 ~eI~~eILeLY~~~r~~~~~~ 169 (491)
..|++.|+++|.....+..|.
T Consensus 245 ~~c~~~i~~l~~~~~~~~~~~ 265 (271)
T 2w96_A 245 RACQEQIEALLESSLRQAQQN 265 (271)
T ss_dssp HHHHHHHHHHHTTTTTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999998766555443
No 9
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.84 E-value=1.5e-21 Score=190.31 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=127.7
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |++++||+.++. ..| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 89 l~iA~K~ee~~~~~~~d~~~i~~------------------~~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~ 148 (260)
T 2cch_B 89 MLLASKFEEIYPPEVAEFVYITD------------------DTY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFL 148 (260)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHTT------------------SSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHc------------------CCc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 6899999998 999999987642 113 2688999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhhcCCcc-ccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhcc----CCCHHHHHHHHHH
Q 011185 80 KFKVAQNALAQVAWNFVNDGLRTSL-CLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVSNQ 154 (491)
Q Consensus 80 ~L~~~~~~L~qlAw~fLnDSl~T~L-cLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~L----gvt~eqL~eI~~e 154 (491)
.++.....+.++||+|+++++.+.. |+.|+|++||+||||+|...++. ..|+..+ |++.++|.+|+..
T Consensus 149 ~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-------~~w~~~l~~~~g~~~~~i~~~~~~ 221 (260)
T 2cch_B 149 HQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-------QSWPESLIRKTGYTLESLKPCLMD 221 (260)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-------CCSCHHHHHHHCCCHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-------CcchHHHHHHhCcCHHHHHHHHHH
Confidence 9986644789999999999987777 99999999999999999999874 3688765 9999999999999
Q ss_pred HHHHHhhCCCCCCCCCccccccCCCCCCCCC
Q 011185 155 MLELYEQNRVPQSQGSEVEGSAGGASSHRPQ 185 (491)
Q Consensus 155 ILeLY~~~r~~~~~~~~~e~~~~~~~~~~~~ 185 (491)
|..+|...... +..-+.-.++....+.++
T Consensus 222 l~~~~~~~~~~--~~~~i~~Ky~~~~~~~vs 250 (260)
T 2cch_B 222 LHQTYLKAPQH--AQQSIREKYKNSKYHGVS 250 (260)
T ss_dssp HHHHHHHGGGS--SCCHHHHHHTSGGGTTGG
T ss_pred HHHHHHhcCCc--chHHHHHHHCccccccee
Confidence 99999864322 112234444444444444
No 10
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.84 E-value=2.5e-21 Score=182.18 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=124.7
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKK 80 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk~ 80 (491)
||||||+||+|++++||+.++. + + +.+|..+|+.||++|+|++.+.+|+.||.+|++.
T Consensus 55 lylAcK~ee~p~~l~di~~~~~-------------~--~-------~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~ 112 (207)
T 1c9b_A 55 LYIACRQEGVPRTFKEICAVSR-------------I--S-------KKEIGRCFKLILKALETSVDLITTGDFMSRFCSN 112 (207)
T ss_dssp HHHHHHHTTCCCCHHHHHHTSS-------------S--C-------HHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHC-------------C--C-------HHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHH
Confidence 6899999999999999998643 1 1 3568899999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHHHHHHHHHh
Q 011185 81 FKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYE 160 (491)
Q Consensus 81 L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~~eILeLY~ 160 (491)
+++.. .+.++||.++++++.+.+|+.|+|+.||+||||+|+.+++...+. ..|+..++++..+|..++.+|+....
T Consensus 113 l~l~~-~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~---~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 113 LCLPK-QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQ---KEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp TTCCH-HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCH---HHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred CCCCH-HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99874 789999999999999999999999999999999999999876544 35888899999999999999998766
Q ss_pred hCCCCCCCCC
Q 011185 161 QNRVPQSQGS 170 (491)
Q Consensus 161 ~~r~~~~~~~ 170 (491)
..- |.+-.+
T Consensus 189 ~~~-p~~~~~ 197 (207)
T 1c9b_A 189 DLF-PTDFKF 197 (207)
T ss_dssp HHS-CSSCCC
T ss_pred HhC-hHHHcc
Confidence 533 555443
No 11
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.83 E-value=6.1e-21 Score=185.75 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=118.7
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |+++++++.++. ..| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 101 l~iA~K~eE~~~p~~~d~~~~~~------------------~~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~ 160 (257)
T 1g3n_C 101 LLVASKLRSLTPISTSSLCYAAA------------------DSF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLL 160 (257)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHTT------------------TCS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHccccCCCHHHHHHHHC------------------CCC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 5899999996 899999987642 113 2688999999999999999999999999999999
Q ss_pred HhcccH---HHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhcc----CCCHHHHHHHH
Q 011185 80 KFKVAQ---NALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVS 152 (491)
Q Consensus 80 ~L~~~~---~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~L----gvt~eqL~eI~ 152 (491)
.++... ..+.+.||+|+++++.+..|+.|+|++||+||||+|...++...+. ....|+..+ |++.++|.+|+
T Consensus 161 ~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~-~~~~w~~~l~~~t~~~~~~l~~c~ 239 (257)
T 1g3n_C 161 KLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDT-HSGGVVPQLASILGCDVSVLQAAV 239 (257)
T ss_dssp HHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC------CHHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCccc-chhhHHHHHHHHHCcCHHHHHHHH
Confidence 987643 2467889999999999999999999999999999999988753221 113587765 99999999999
Q ss_pred HHHHHHHhhCC
Q 011185 153 NQMLELYEQNR 163 (491)
Q Consensus 153 ~eILeLY~~~r 163 (491)
..|.++|....
T Consensus 240 ~~i~~l~~~~~ 250 (257)
T 1g3n_C 240 EQILTSVSDFD 250 (257)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHCC
Confidence 99999998743
No 12
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.82 E-value=5.2e-21 Score=191.84 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=116.8
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |..+++++.++.. .| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 121 L~lAsK~eE~~p~~~~~l~~~~~~------------------~~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~ 180 (306)
T 3g33_B 121 MLLASKLRETTPLTIEKLCIYTDH------------------AV--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILH 180 (306)
T ss_dssp HHHHHHHHCSSCCCTTHHHHHTTT------------------SS--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHhcc------------------Cc--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 6899999995 7799999876421 12 2688999999999999999999999999999999
Q ss_pred HhcccH---HHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhcc----CCCHHHHHHHH
Q 011185 80 KFKVAQ---NALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEF----DVTPRQLEEVS 152 (491)
Q Consensus 80 ~L~~~~---~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~L----gvt~eqL~eI~ 152 (491)
.++... ..+.+.||+|+++++.+..|+.|+|++||+||||+|...++...+ . ...|+..| |+++++|.+|+
T Consensus 181 ~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~-w-~~~w~~~L~~~tg~~~~~l~~c~ 258 (306)
T 3g33_B 181 RLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSM-S-GDELTELLAGITGTEVDCLRACQ 258 (306)
T ss_dssp TSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---C-C-HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCC-c-hhhHHHHHHHHHCCCHHHHHHHH
Confidence 987542 247789999999999999999999999999999999999884321 1 12455554 99999999999
Q ss_pred HHHHHHHhhCCCC
Q 011185 153 NQMLELYEQNRVP 165 (491)
Q Consensus 153 ~eILeLY~~~r~~ 165 (491)
..|+++|......
T Consensus 259 ~~I~~l~~~~l~~ 271 (306)
T 3g33_B 259 EQIEAALRESLRE 271 (306)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHHH
Confidence 9999999974433
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.79 E-value=6.3e-20 Score=178.30 Aligned_cols=136 Identities=15% Similarity=0.273 Sum_probs=112.7
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |++++|++.++. ..| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 102 l~iA~K~eE~~~p~~~d~~~~~~------------------~~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~ 161 (254)
T 2f2c_A 102 VLIGSKIRTVKPMTVSKLTYLSC------------------DCF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCN 161 (254)
T ss_dssp HHHHHHHHCSSCCCHHHHSTTC---------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHhC------------------CCC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 5899999994 889999876432 223 3689999999999999999999999999999999
Q ss_pred HhcccHH---HHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccch----hc----cCCCHHHH
Q 011185 80 KFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWW----QE----FDVTPRQL 148 (491)
Q Consensus 80 ~L~~~~~---~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~----e~----Lgvt~eqL 148 (491)
.++...+ .+.+.||+|++.++.+..|+.|+|++||+||||+|....+. ...|| .. .|++.++|
T Consensus 162 ~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~------~~~~w~~~~~~l~~~tg~~~~~l 235 (254)
T 2f2c_A 162 ALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNT------NCRPWTCYLEDLSSILNFSTNTV 235 (254)
T ss_dssp HTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC------SSCCTHHHHHHHHHHHTCCHHHH
T ss_pred HcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCC------CCCChHHHHHHHHHHHCcCHHHH
Confidence 9976532 35778999999999999999999999999999999988521 12233 22 38999999
Q ss_pred HHHHHHHHHHHhhC
Q 011185 149 EEVSNQMLELYEQN 162 (491)
Q Consensus 149 ~eI~~eILeLY~~~ 162 (491)
..|++.|.++|...
T Consensus 236 ~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 236 RTVKDQVSEAFSLY 249 (254)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.72 E-value=7.1e-18 Score=157.60 Aligned_cols=135 Identities=14% Similarity=0.201 Sum_probs=119.2
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCcHHHHHHHH
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNV--HHPYKPLVEAI 78 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V--~hPhkfLv~yL 78 (491)
||||||.|++|+.++||+.++. +. +.+|..+++.|++.|+|++.+ .+|+.||.+|+
T Consensus 59 lylAcr~~~~p~~l~di~~~~~-------------v~---------~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~ 116 (200)
T 1ais_B 59 VYAACRLLKVPRTLDEIADIAR-------------VD---------KKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFA 116 (200)
T ss_dssp HHHHHHHHTCCCCHHHHHHHTT-------------SC---------HHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHC-------------CC---------HHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHH
Confidence 6899999999999999998752 11 357889999999999999999 99999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHHHHHHHH
Q 011185 79 KKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLEL 158 (491)
Q Consensus 79 k~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~~eILeL 158 (491)
..|++.. .+.+.||.+++++..+.++..++|..||+||||+|+.+++...+. ..|....+++..+|..++++|.+.
T Consensus 117 ~~L~l~~-~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~---~ei~~~~~vs~~ti~~~~~~l~~~ 192 (200)
T 1ais_B 117 DELGLSE-KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQ---REVAEVARVTEVTVRNRYKELVEK 192 (200)
T ss_dssp HHHTCCH-HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCH---HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCH-HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCH---HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999874 789999999999999999999999999999999999999875432 346667799999999999999988
Q ss_pred Hhh
Q 011185 159 YEQ 161 (491)
Q Consensus 159 Y~~ 161 (491)
+..
T Consensus 193 l~~ 195 (200)
T 1ais_B 193 LKI 195 (200)
T ss_dssp HTC
T ss_pred cCC
Confidence 763
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.72 E-value=1.6e-18 Score=171.52 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=110.5
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |+.+++|+.++. ..| .+++|+.||+.||++|+|+|.+++|+.||..|++
T Consensus 101 L~iA~K~eE~~~p~l~~~~~i~~------------------~~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~ 160 (283)
T 1w98_B 101 LFIAAKLEEIYPPKLHQFAYVTD------------------GAC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQ 160 (283)
T ss_dssp HHHHHHHHCSSCCCHHHHHHTTT------------------TSS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHhcccCCCcHHHHHHHHc------------------CCC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHH
Confidence 5899999997 889999987531 123 3689999999999999999999999999999999
Q ss_pred HhcccH----------HHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHH
Q 011185 80 KFKVAQ----------NALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLE 149 (491)
Q Consensus 80 ~L~~~~----------~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~ 149 (491)
.++... ......+.++++.++.+..|+.|+|++||+||||+|+. ...|....|+++++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~----------~~~l~~~tg~~~~~i~ 230 (283)
T 1w98_B 161 VAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS----------SELMQKVSGYQWCDIE 230 (283)
T ss_dssp HHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----------HHHHHHHSCCCHHHHH
T ss_pred HhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----------hHHHHHHhCCCHHHHH
Confidence 876421 12334567789999988889999999999999999852 1357788899999999
Q ss_pred HHHHHHHHHHhhCC
Q 011185 150 EVSNQMLELYEQNR 163 (491)
Q Consensus 150 eI~~eILeLY~~~r 163 (491)
+|++.|+.+|...+
T Consensus 231 ~c~~~l~~~~~~~~ 244 (283)
T 1w98_B 231 NCVKWMVPFAMVIR 244 (283)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 16
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.66 E-value=1.1e-16 Score=156.82 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=108.6
Q ss_pred CEEeeccCCC-CCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHHHHH
Q 011185 1 MFLAGKVEET-PRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIK 79 (491)
Q Consensus 1 LFLAsKVEEt-prkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFDL~V~hPhkfLv~yLk 79 (491)
||||||+||. |..+++++.++. ..| .+++|+.||+.||.+|+|+|.+++|+.||..|++
T Consensus 99 l~iAsK~eE~~p~~~~~l~~~~~------------------~~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~ 158 (252)
T 1f5q_B 99 LHIAGKVRAYMPIKATQLAYLCG------------------GAT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILH 158 (252)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHC------------------TTC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHhC------------------CCC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHH
Confidence 5899999996 789999987642 123 2688999999999999999999999999999999
Q ss_pred HhcccHH---HHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccch----hccCCCHHHHHHHH
Q 011185 80 KFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWW----QEFDVTPRQLEEVS 152 (491)
Q Consensus 80 ~L~~~~~---~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~----e~Lgvt~eqL~eI~ 152 (491)
.++...+ .+...|++|+..++..+-++.|+|++||+||+.++. +...|.. ..|. ...|++.++|.+|+
T Consensus 159 ~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~--~~~~~~L~~~t~~~~~~l~~C~ 233 (252)
T 1f5q_B 159 IMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---NQKYDYY--ENRIDGVCKSLYITKEELHQCC 233 (252)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHH--HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---ccCCCch--hhHHHHHHHHHCcCHHHHHHHH
Confidence 9876542 467889999999998888999999999999965544 2211100 0112 23489999999999
Q ss_pred HHHHHHHhhC
Q 011185 153 NQMLELYEQN 162 (491)
Q Consensus 153 ~eILeLY~~~ 162 (491)
+.|.+++...
T Consensus 234 ~~i~~~l~~~ 243 (252)
T 1f5q_B 234 DLVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.2e-17 Score=168.08 Aligned_cols=134 Identities=10% Similarity=0.086 Sum_probs=32.9
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcC------------Cccccc
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLG------------FDLNVH 68 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLg------------FDL~V~ 68 (491)
||||||.|+.|+.++||+.++. +. +.+|..+++.|++.|+ |++.+.
T Consensus 176 lyiAcR~e~~prtl~ei~~~~~-------------v~---------~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 233 (345)
T 3k7a_M 176 ILIGCRRAEVARTFKEIQSLIH-------------VK---------TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGA 233 (345)
T ss_dssp TTTTSBTTBSSCCHHHHHHSSS-------------CC---------SHHHHHHHHHHHHHHTCC----------------
T ss_pred HHHHHHHcCCCccHHHHHHHHC-------------CC---------HHHHHHHHHHHHHHHhhhhccccccccccccCCC
Confidence 7999999999999999998653 11 3568888888888888 999999
Q ss_pred CcHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHH
Q 011185 69 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQL 148 (491)
Q Consensus 69 hPhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL 148 (491)
+|+.||.+|+..|++. ..+.+.||.|++++..+.+++.++|..||+||||+|+.+++..++. ..|...++|++..|
T Consensus 234 ~p~~~i~Rf~~~L~l~-~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~---~eIa~~~~Vse~TI 309 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLP-MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITA---AKVGQTLQVTEGTI 309 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHCCCHHHH
Confidence 9999999999999986 4799999999999999999999999999999999999999877654 46999999999999
Q ss_pred HHHHHHHHHHHh
Q 011185 149 EEVSNQMLELYE 160 (491)
Q Consensus 149 ~eI~~eILeLY~ 160 (491)
..++++|++++.
T Consensus 310 r~~ykel~~~~~ 321 (345)
T 3k7a_M 310 KSGYKILYEHRD 321 (345)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 999999998774
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.07 E-value=9.5e-12 Score=127.06 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=31.1
Q ss_pred CEEeeccCCCCCChHHHHHHHHHhhhccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHcCCc------------cccc
Q 011185 1 MFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFD------------LNVH 68 (491)
Q Consensus 1 LFLAsKVEEtprkLrDVI~Vs~~L~hkkdP~~~~~I~~~se~Yeq~Ke~IL~mErlILrtLgFD------------L~V~ 68 (491)
||+||+.+++|+.++||+.++. ++ +.+|..+.+.|++.|++. +.+.
T Consensus 176 lYiACR~~~~prtl~eI~~~~~-------------v~---------~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~ 233 (345)
T 4bbr_M 176 ILIGCRRAEVARTFKEIQSLIH-------------VK---------TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGA 233 (345)
T ss_dssp HHHHHHHTCCBCCHHHHHHHHT-------------CC---------TTHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHhcCCCccHHHHHHHhC-------------CC---------HHHHHHHHHHHHHHhCccccccccccccccCCCC
Confidence 6899999999999999998753 11 245777778888888864 6778
Q ss_pred CcHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHH
Q 011185 69 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQL 148 (491)
Q Consensus 69 hPhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL 148 (491)
+|..|+.+|+..|++. ..+.+.||.+++.+....++....|..||+||||+|+.+++..++. ..-....+|+...|
T Consensus 234 ~p~~~i~Rf~s~L~l~-~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~---~eIa~v~~Vse~TI 309 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLP-MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITA---AKVGQTLQVTEGTI 309 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCH---HHHHHHHCCCHHHH
Confidence 9999999999999986 4789999999999998888999999999999999999999876654 34566779999999
Q ss_pred HHHHHHHHHHHhh
Q 011185 149 EEVSNQMLELYEQ 161 (491)
Q Consensus 149 ~eI~~eILeLY~~ 161 (491)
...+++|++....
T Consensus 310 r~rykel~~~~~~ 322 (345)
T 4bbr_M 310 KSGYKILYEHRDK 322 (345)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999888775543
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.82 E-value=0.0047 Score=57.13 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHH
Q 011185 70 PYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLE 149 (491)
Q Consensus 70 PhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~ 149 (491)
.+.+|.+++..|++. ..+...|..|+...+.-.+.-.++|..||+||||+|++..+.+... ..-...++++..+|.
T Consensus 12 a~~~I~~~~~~L~L~-~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l---~di~~~~~v~~~~i~ 87 (200)
T 1ais_B 12 ALSELDRITAQLKLP-RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTL---DEIADIARVDKKEIG 87 (200)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCH---HHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHCCCHHHHH
Confidence 456788889999887 4788899999888776666678999999999999999999864221 123455689999999
Q ss_pred HHHHHHHHHHh
Q 011185 150 EVSNQMLELYE 160 (491)
Q Consensus 150 eI~~eILeLY~ 160 (491)
.+...|+..+.
T Consensus 88 ~~~~~l~~~L~ 98 (200)
T 1ais_B 88 RSYRFIARNLN 98 (200)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.40 E-value=0.012 Score=54.85 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHH
Q 011185 70 PYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLE 149 (491)
Q Consensus 70 PhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~ 149 (491)
.+.+|..++..|++.. .+..+|..|+...+.....-.+.|..||+||||+|++..+..... ......++++..+|.
T Consensus 8 a~~~I~~~~~~L~L~~-~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l---~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPR-NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTF---KEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCH---HHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHCCCHHHHH
Confidence 4567888888888874 677888888887775555678999999999999999998863221 123445578999999
Q ss_pred HHHHHHHHHHhh
Q 011185 150 EVSNQMLELYEQ 161 (491)
Q Consensus 150 eI~~eILeLY~~ 161 (491)
.+...|+..+..
T Consensus 84 ~~~~~ll~~L~~ 95 (207)
T 1c9b_A 84 RCFKLILKALET 95 (207)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 888888877653
No 21
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.39 E-value=0.046 Score=51.89 Aligned_cols=90 Identities=11% Similarity=0.203 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccc-cChHHHHHHHHHHHHHHhCcCCCCCC-----cccchhccCCCH
Q 011185 72 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQ-FKPHHIAAGAIFLAAKFLKVKLPSDG-----DKVWWQEFDVTP 145 (491)
Q Consensus 72 kfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLq-YpPsvIAaAAIyLA~kllgi~LPs~~-----~~~W~e~Lgvt~ 145 (491)
.+|...+..+++.. .+..+|..|+...+.....-. +.|..||+||||+|+++-....+... ...|...+.++.
T Consensus 33 ~~i~~v~~~l~L~~-~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 33 KVVQTFGDRLRLRQ-RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 46777777888764 677889888888776555667 99999999999999999886433210 001222346788
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011185 146 RQLEEVSNQMLELYEQN 162 (491)
Q Consensus 146 eqL~eI~~eILeLY~~~ 162 (491)
.+|..+-..|+..+...
T Consensus 112 ~~I~~~E~~iL~~L~f~ 128 (235)
T 1zp2_A 112 SNISEIEFEIISVLDAF 128 (235)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 99999888888877543
No 22
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=94.60 E-value=0.098 Score=50.84 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=63.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|..++...+.....-...+..||+||+|+|+++-.+..|.-.+-.......++..+|..+-
T Consensus 44 wl~~v~~~~~l~~-~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 44 WLVQVQMKFRLLQ-ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 4666666676664 677889999888775555667889999999999999998875553211111112247899999999
Q ss_pred HHHHHHHhhC
Q 011185 153 NQMLELYEQN 162 (491)
Q Consensus 153 ~eILeLY~~~ 162 (491)
..|+..+...
T Consensus 123 ~~IL~~L~f~ 132 (269)
T 2b9r_A 123 MKILRALNFG 132 (269)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHcCCc
Confidence 9999887644
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=94.52 E-value=0.1 Score=51.29 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCc--------------ccc
Q 011185 72 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGD--------------KVW 137 (491)
Q Consensus 72 kfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~--------------~~W 137 (491)
.+|......|++.. .+..+|..|+...+....+-.+.|..||+||||||+++-.+..|.... ..+
T Consensus 48 ~~I~~v~~~l~L~~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ-QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 35666677777764 677889999988876666778999999999999999998876553100 001
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhC
Q 011185 138 WQEFDVTPRQLEEVSNQMLELYEQN 162 (491)
Q Consensus 138 ~e~Lgvt~eqL~eI~~eILeLY~~~ 162 (491)
...+.++..+|..+-..||..+...
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L~f~ 151 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELMDCC 151 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHHHHHHHHcCCC
Confidence 2233467788888888888776643
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.38 E-value=0.068 Score=54.38 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=69.9
Q ss_pred ccCcHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHH
Q 011185 67 VHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPR 146 (491)
Q Consensus 67 V~hPhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~e 146 (491)
....+..|..++..|++.. .+...|..|....+--.+.-......||+||||+|++..+.+... ..-...++++..
T Consensus 126 L~~a~~~I~~~~~~L~Lp~-~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl---~eI~~~~~v~~k 201 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPK-IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF---KEIQSLIHVKTK 201 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH---HHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH---HHHHHHhCCCHH
Confidence 3456778888999998874 788899999888776666667889999999999999998864322 124456689988
Q ss_pred HHHHHHHHHHHHHhh
Q 011185 147 QLEEVSNQMLELYEQ 161 (491)
Q Consensus 147 qL~eI~~eILeLY~~ 161 (491)
+|..++..|...+..
T Consensus 202 eigr~~k~l~~~L~l 216 (345)
T 4bbr_M 202 EFGKTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhCc
Confidence 999888888876653
No 25
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=94.29 E-value=0.2 Score=50.31 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=61.1
Q ss_pred HHHHHHHHhc--ccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccC-------C
Q 011185 73 PLVEAIKKFK--VAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFD-------V 143 (491)
Q Consensus 73 fLv~yLk~L~--~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lg-------v 143 (491)
+|..++..++ +.. .+..+|..|+...+....+..|.|..||+||||||+++-.+..+.. ..-..+. +
T Consensus 63 ~I~ev~~~l~~~Lp~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~---d~v~~~~~~p~~~~~ 138 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPR-SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP---QFVGNLRESPLGQEK 138 (323)
T ss_dssp HHHHHHHHCTTTCCH-HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHH---HHGGGSSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCH-HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHH---HHHHHhccChhhhHH
Confidence 4667777777 654 6778999999988877777899999999999999999988743321 1111122 2
Q ss_pred CHHHHHHHHHHHHHHHhhCC
Q 011185 144 TPRQLEEVSNQMLELYEQNR 163 (491)
Q Consensus 144 t~eqL~eI~~eILeLY~~~r 163 (491)
+..+|..+-..||..+...-
T Consensus 139 ~~~~Il~~E~~iL~~L~f~l 158 (323)
T 1jkw_A 139 ALEQILEYELLLIQQLNFHL 158 (323)
T ss_dssp HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHCCCcE
Confidence 24667777777777665433
No 26
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=94.20 E-value=0.14 Score=49.12 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|.+|+...+.....-......||+||+|+|+++-....|.-.+-.......++..+|..+-
T Consensus 58 wl~~v~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 58 WMHLLCESFELDK-SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHTTCCT-THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHCCCc-hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4555566666653 577889999988775555667889999999999999998765443111111112247899999999
Q ss_pred HHHHHHHhhCCCC
Q 011185 153 NQMLELYEQNRVP 165 (491)
Q Consensus 153 ~eILeLY~~~r~~ 165 (491)
..||..+...-.+
T Consensus 137 ~~IL~~L~~~l~~ 149 (254)
T 2f2c_A 137 KDILEALKWDTEA 149 (254)
T ss_dssp HHHHHHTTTCCCC
T ss_pred HHHHHHCCCcCCC
Confidence 9999988754433
No 27
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.17 E-value=0.12 Score=49.82 Aligned_cols=90 Identities=10% Similarity=0.133 Sum_probs=63.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|..|+...+.....-......||+||+|+|+++-....|.-.+-.....-.++..+|..+-
T Consensus 57 wl~ev~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 135 (257)
T 1g3n_C 57 WMFSVCQEYNLEP-NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCc-cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 4555566666654 677899999988776555667789999999999999998765554211111112248899999999
Q ss_pred HHHHHHHhhCC
Q 011185 153 NQMLELYEQNR 163 (491)
Q Consensus 153 ~eILeLY~~~r 163 (491)
..|+..+...-
T Consensus 136 ~~iL~~L~~~l 146 (257)
T 1g3n_C 136 KELLEKLAWRT 146 (257)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHCCCcC
Confidence 99998876433
No 28
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.02 E-value=0.14 Score=50.93 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. .+..+|.+|+...+....+-.+.+..||++|+|||+++-....|.-..-.......++..+|..+-
T Consensus 77 wl~ev~~~~~l~~-~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 77 WMLEVCEEQRCEE-EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHHTTCCT-THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHhCCcH-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 4455555566653 566789999987775555678899999999999999998765444221112222358899999999
Q ss_pred HHHHHHHhhCCCCCC
Q 011185 153 NQMLELYEQNRVPQS 167 (491)
Q Consensus 153 ~eILeLY~~~r~~~~ 167 (491)
..||..+...-..+.
T Consensus 156 ~~IL~~L~f~l~~~t 170 (306)
T 3g33_B 156 VLVLGKLKWDLAAVI 170 (306)
T ss_dssp HHHHHHTTTCCCCCC
T ss_pred HHHHHHcCCccCCCC
Confidence 999998876544443
No 29
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=93.68 E-value=0.15 Score=49.35 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=62.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|..++...+.....-.+.+..||+||+|+|+++-.+..|.-..-.......++..+|..+-
T Consensus 63 wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 63 WMLEVCEEQKCEE-EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHTTCCT-THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHCCch-hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 3444455555543 566789999988775555567889999999999999998874333110011112247899999999
Q ss_pred HHHHHHHhhCCC
Q 011185 153 NQMLELYEQNRV 164 (491)
Q Consensus 153 ~eILeLY~~~r~ 164 (491)
..|+..+...-.
T Consensus 142 ~~IL~~L~~~l~ 153 (271)
T 2w96_A 142 LLLVNKLKWNLA 153 (271)
T ss_dssp HHHHHHTTTCCC
T ss_pred HHHHHHCCCccC
Confidence 999988765433
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=93.66 E-value=0.12 Score=49.90 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=61.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|..++...+.....-......||+||+|+|+++-.+..|.-.+-.....-.++..+|..+-
T Consensus 45 wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 45 WLVEVGEEYKLQN-ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 4566666666664 566788888877664434456778999999999999999875454211011111147899999999
Q ss_pred HHHHHHHhhC
Q 011185 153 NQMLELYEQN 162 (491)
Q Consensus 153 ~eILeLY~~~ 162 (491)
..|+..+...
T Consensus 124 ~~iL~~L~~~ 133 (260)
T 2cch_B 124 HLVLKVLTFD 133 (260)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHcCCc
Confidence 9999887643
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.04 Score=55.81 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHH
Q 011185 69 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQL 148 (491)
Q Consensus 69 hPhkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL 148 (491)
..+.+|..++..|++.. .+...|..|....+...+.-......||+||||+|++..+++... ......++++..+|
T Consensus 128 ~a~~~I~~~~~~L~Lp~-~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl---~ei~~~~~v~~keI 203 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPK-IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF---KEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCH---HHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccH---HHHHHHHCCCHHHH
Confidence 45677888888888874 788889888888776666678899999999999999988763221 12445668999999
Q ss_pred HHHHHHHHHHHh
Q 011185 149 EEVSNQMLELYE 160 (491)
Q Consensus 149 ~eI~~eILeLY~ 160 (491)
..+...|+..+.
T Consensus 204 gr~~~~l~~~L~ 215 (345)
T 3k7a_M 204 GKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 32
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.86 E-value=0.24 Score=48.62 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=61.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCC-ccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRT-SLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEV 151 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T-~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI 151 (491)
+|......+++.. ....+|..++...+.. ...-.+....||+||+|+|+++-....|.-.+-.....-.++..+|..+
T Consensus 56 wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 56 WLMEVCEVYKLHR-ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHTTCBH-HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHhCCCc-cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 3555555566653 6778888898876643 3445788999999999999999887555311000111114789999999
Q ss_pred HHHHHHHHhhCCC
Q 011185 152 SNQMLELYEQNRV 164 (491)
Q Consensus 152 ~~eILeLY~~~r~ 164 (491)
-..|+..+...-.
T Consensus 135 E~~IL~~L~~~l~ 147 (283)
T 1w98_B 135 ELMIMKALKWRLS 147 (283)
T ss_dssp HHHHHHHTTTCCC
T ss_pred HHHHHHHcCCcCC
Confidence 9999988775433
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=92.84 E-value=0.23 Score=47.58 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCc
Q 011185 72 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKV 127 (491)
Q Consensus 72 kfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi 127 (491)
.+|......|++.. .+..+|..|+...+.....-.+.+..||+||||+|+++-..
T Consensus 36 ~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 36 NLIQEMGQRLNVSQ-LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcH-HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 46777788888764 67789999998888666677899999999999999999886
No 34
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.70 E-value=0.24 Score=47.21 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCc
Q 011185 72 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKV 127 (491)
Q Consensus 72 kfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi 127 (491)
.+|......+++.. .+..+|..|+...+....+-.+.+..||+||||+|+++-..
T Consensus 46 ~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~ 100 (258)
T 2i53_A 46 RFIFDVGTRLGLHY-DTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET 100 (258)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc
Confidence 46778888888774 67789999998887666677899999999999999999875
No 35
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=91.85 E-value=0.24 Score=50.48 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCc
Q 011185 72 KPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKV 127 (491)
Q Consensus 72 kfLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi 127 (491)
.+|..+...|++.. .+..+|..|+...+....+-.+.+..||+||||||+++-.+
T Consensus 43 ~wI~ev~~~l~L~~-~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 43 NLLQDMGQRLNVSQ-LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHTTTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 45666677777764 67789999998888766677899999999999999999876
No 36
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=91.54 E-value=0.37 Score=46.83 Aligned_cols=92 Identities=11% Similarity=-0.011 Sum_probs=63.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcCCccccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHH
Q 011185 73 PLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVS 152 (491)
Q Consensus 73 fLv~yLk~L~~~~~~L~qlAw~fLnDSl~T~LcLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~ 152 (491)
+|......+++.. ....+|.+++...+.....-......||++|+++|+++-.+..|.-..-.+.....++.++|...-
T Consensus 55 Wl~ev~~~~~l~~-eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE 133 (252)
T 1f5q_B 55 WMFCVCKDLRQDN-NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLE 133 (252)
T ss_dssp HHHHHHHHTTCCT-THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 3555555566553 577889999987764444556788999999999999998875443211112233368899999999
Q ss_pred HHHHHHHhhCCCC
Q 011185 153 NQMLELYEQNRVP 165 (491)
Q Consensus 153 ~eILeLY~~~r~~ 165 (491)
..||..+...-..
T Consensus 134 ~~IL~~L~w~l~~ 146 (252)
T 1f5q_B 134 VKSLDTLSWVADR 146 (252)
T ss_dssp HHHHHHTTTCCCC
T ss_pred HHHHHHCCCccCC
Confidence 9999887754443
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=62.56 E-value=24 Score=29.87 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=41.6
Q ss_pred ccccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHHHHHHHHHHHHHHhh
Q 011185 105 CLQFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQLEEVSNQMLELYEQ 161 (491)
Q Consensus 105 cLqYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eqL~eI~~eILeLY~~ 161 (491)
.+-|.=++-++||+|.|++.+++.++.. .-....++...++..++..|-.+..+
T Consensus 40 ~~D~s~P~f~aaA~~~acr~~K~kVdK~---KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 40 DLDLSRPLFTSAALLSACKILKLKVDKN---KMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp HCCTTSHHHHHHHHHHHHHHTTCCCCHH---HHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHHHccCCCHH---HHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4567777889999999999999876531 23444589999999999998876543
No 38
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=53.24 E-value=78 Score=32.36 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHcCCccccc--------Cc----HHH---------------HHHHHHHhcccHHHHHHHHHHHHHh
Q 011185 46 QKELILLGERVVLATLGFDLNVH--------HP----YKP---------------LVEAIKKFKVAQNALAQVAWNFVND 98 (491)
Q Consensus 46 ~Ke~IL~mErlILrtLgFDL~V~--------hP----hkf---------------Lv~yLk~L~~~~~~L~qlAw~fLnD 98 (491)
.+..+-.+|..||..|.|.-..+ .+ ... |..+|..|......+...+|.++.-
T Consensus 167 lvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~ 246 (347)
T 2r7g_A 167 MIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQH 246 (347)
T ss_dssp HHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 45677889999999999986643 11 111 2222333322222467789999888
Q ss_pred hc--CCccccccChHHHHHHHHHHHHHHhCcC
Q 011185 99 GL--RTSLCLQFKPHHIAAGAIFLAAKFLKVK 128 (491)
Q Consensus 99 Sl--~T~LcLqYpPsvIAaAAIyLA~kllgi~ 128 (491)
++ .|.++.----.+|-+.|||..++..+..
T Consensus 247 ~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 247 TLQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 87 4677777789999999999999998754
No 39
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=47.12 E-value=50 Score=33.05 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhcC--Ccccc-ccChHHHHHHHHHHHHHHhCcCCCCCCcccchhccCCCHHH
Q 011185 71 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLR--TSLCL-QFKPHHIAAGAIFLAAKFLKVKLPSDGDKVWWQEFDVTPRQ 147 (491)
Q Consensus 71 hkfLv~yLk~L~~~~~~L~qlAw~fLnDSl~--T~LcL-qYpPsvIAaAAIyLA~kllgi~LPs~~~~~W~e~Lgvt~eq 147 (491)
+.||.++++...+.. .+.-.|..|+..... ..+.+ .+..+-|-++||.+|.+++.-.... ...|....|++..+
T Consensus 78 ~~Yl~RI~k~t~ls~-~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ys--N~~wAkVgGisl~E 154 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEH-CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFST--NAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCC--HHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccC--hhHhhhccCcCHHH
Confidence 677777777666653 444455556654332 12222 5678999999999999998643222 24577777999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 011185 148 LEEVSNQMLELYEQNR 163 (491)
Q Consensus 148 L~eI~~eILeLY~~~r 163 (491)
|..+-.++|.+....-
T Consensus 155 LN~LE~eFL~lLdf~L 170 (293)
T 2pmi_B 155 LNILENDFLKRVNYRI 170 (293)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHcCCce
Confidence 9999999998865543
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=24.08 E-value=1.6e+02 Score=30.70 Aligned_cols=54 Identities=11% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhhc--CCccccccChHHHHHHHHHHHHHHhCcC
Q 011185 75 VEAIKKFKVAQNALAQVAWNFVNDGL--RTSLCLQFKPHHIAAGAIFLAAKFLKVK 128 (491)
Q Consensus 75 v~yLk~L~~~~~~L~qlAw~fLnDSl--~T~LcLqYpPsvIAaAAIyLA~kllgi~ 128 (491)
..+|..|......+....|.++.-++ .|.|+.---=.+|-+.|||.-+++.+..
T Consensus 287 ~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~ 342 (411)
T 4ell_A 287 NTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 342 (411)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCC
Confidence 33344444333357778898888777 4677777778999999999999988754
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=21.34 E-value=2.7e+02 Score=30.88 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHcCCccccc--------CcH----------HH-----------HHHHHHHhcccHHHHHHHHHHHH
Q 011185 46 QKELILLGERVVLATLGFDLNVH--------HPY----------KP-----------LVEAIKKFKVAQNALAQVAWNFV 96 (491)
Q Consensus 46 ~Ke~IL~mErlILrtLgFDL~V~--------hPh----------kf-----------Lv~yLk~L~~~~~~L~qlAw~fL 96 (491)
.++.+-.+|..||..|-|.-..+ +|- -| |..++..|......+...+|.++
T Consensus 474 lvkHL~~iEe~iLEslaW~~~S~L~~~l~~~~~~~g~~~s~sl~iffrKvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~f 553 (656)
T 4elj_A 474 MIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLF 553 (656)
T ss_dssp HHHHHHHHHHHHHHTGGGSSSCTHHHHHHTTSCC----CCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHhccccccCccccHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 45678889999999999876532 330 11 22223333333235777899988
Q ss_pred Hhhc--CCccccccChHHHHHHHHHHHHHHhCcCC
Q 011185 97 NDGL--RTSLCLQFKPHHIAAGAIFLAAKFLKVKL 129 (491)
Q Consensus 97 nDSl--~T~LcLqYpPsvIAaAAIyLA~kllgi~L 129 (491)
.-++ .|.+...---.+|-+.|||..+++.+..+
T Consensus 554 e~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~l 588 (656)
T 4elj_A 554 QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 588 (656)
T ss_dssp HHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence 8877 46677777889999999999999987543
Done!