BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011186
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 179/424 (42%), Gaps = 42/424 (9%)
Query: 29 SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTV---IVGFN 85
R E+ L ++ P + + ++ M + AG + +++AA+SIA ++ + F
Sbjct: 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64
Query: 86 FGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLG 145
GLL+ AL + Q GA R H + + + I+ + P++ +L
Sbjct: 65 VGLLM----ALVPVVAQLNGAGRQHKIPFEVHQGLILALLV----------SVPIIAVLF 110
Query: 146 QPD------DVAELSGT-------VAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSL 192
Q DV E T ++ +P + F T + VI ++
Sbjct: 111 QTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI-- 168
Query: 193 VGLLVNVLTSWLFVY----VLDFGVVGAALALDISWWVLCFGLYGYAAFG---GCPLTWS 245
GLL+N+ +W+FVY + G VG +A I +W++ L Y +
Sbjct: 169 -GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227
Query: 246 GFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGW 305
F L +L L E + ++ L+ L + +A A V ++ +
Sbjct: 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSL 285
Query: 306 QMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALI 365
M P++ AA +RV ++LG + KGA A V + I ++ ++ +++AL+
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345
Query: 366 FTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG 425
+T + V+A +L AI +++VQ V +G G + + Y+++GLP G
Sbjct: 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTG 405
Query: 426 FLIG 429
+++G
Sbjct: 406 YILG 409
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 90/425 (21%), Positives = 172/425 (40%), Gaps = 43/425 (10%)
Query: 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIAN----TVIVGFNFGLL 89
E + L + P + ++++ + + AG G +LAA+++ + TV + F
Sbjct: 12 EIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITF----- 66
Query: 90 LGMASALETLCGQAFGAKRYHMLG-IYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQPD 148
+G+ +AL + Q +GA + G Q W TP L D
Sbjct: 67 MGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSD 126
Query: 149 DVAELSGTVAVWMIPLHFSFA---FQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLF 205
V GT+A +M+ + L + + ++I VS ++NV +++F
Sbjct: 127 YV---EGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIF 183
Query: 206 VY----VLDFGVVGAALALDISWWVLCFGLYGYAA----FGGCPLTWSGFSTQAFSGLWE 257
VY + G G +A +W L+ Y A F LT + F ++ +
Sbjct: 184 VYGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLT-AKFGKPDWAVFKQ 242
Query: 258 YTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAAT 317
K+ G+ LE + ++ + +A A V +S++G MIP + +A
Sbjct: 243 IWKIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVA--AQQVGISLSGILYMIPQSVGSAG 300
Query: 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVD 377
VR+ LG A + + VS+ ++ +I + +++ +A ++ VL+
Sbjct: 301 TVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLS--- 357
Query: 378 KLSFLLAITILLNS--VQPVLSGVAIGS----GWQATVA--YINLGCYYIIGLPLGFLIG 429
+A T+LL + QP I S G++ T +I+ ++ GL G+L+
Sbjct: 358 -----IASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLA 412
Query: 430 WVFKL 434
+ F +
Sbjct: 413 YRFDM 417
>pdb|2POS|A Chain A, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|B Chain B, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|C Chain C, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2POS|D Chain D, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2PR0|A Chain A, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
pdb|2PR0|B Chain B, Crystal Structure Of Sylvaticin, A New Secreted Protein
From Pythium Sylvaticum
Length = 94
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 283 TGYLKNATLAVD-ALSVCMSINGWQMMIPLAF 313
T + K A LA + ALSVC +GWQM+ P +
Sbjct: 10 TEFFKLAPLASNPALSVCQDASGWQMLPPAGY 41
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVC 299
++GV L EN Y++ ++ GY+ T+ V + S C
Sbjct: 8 SSGVDLGTENLYFQSMVFSDGYVVKETIGVGSYSEC 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,056,571
Number of Sequences: 62578
Number of extensions: 473860
Number of successful extensions: 1211
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 4
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)