Query 011186
Match_columns 491
No_of_seqs 269 out of 2107
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 22:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 7.4E-56 1.6E-60 435.4 54.8 434 31-469 12-450 (455)
2 PRK10189 MATE family multidrug 100.0 1.5E-51 3.2E-56 409.0 55.8 431 33-467 26-467 (478)
3 PRK00187 multidrug efflux prot 100.0 1.7E-50 3.7E-55 401.5 56.3 426 32-461 6-443 (464)
4 PRK10367 DNA-damage-inducible 100.0 1.8E-48 4E-53 383.3 53.6 423 32-466 5-434 (441)
5 PRK01766 multidrug efflux prot 100.0 3.7E-48 8E-53 386.4 56.0 434 29-466 5-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 1.7E-48 3.6E-53 386.8 52.3 424 32-461 8-435 (453)
7 TIGR01695 mviN integral membra 100.0 1E-36 2.3E-41 308.7 52.0 413 38-462 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.6E-36 5.6E-41 304.9 48.0 414 39-462 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 6.4E-36 1.4E-40 287.8 42.8 337 44-383 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 3.2E-36 7E-41 293.4 34.5 449 31-481 23-471 (473)
11 PRK15099 O-antigen translocase 100.0 3.1E-34 6.7E-39 282.7 46.3 403 38-460 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.8E-29 3.9E-34 248.9 50.8 386 66-462 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.1E-28 8.8E-33 234.5 51.2 420 35-462 6-437 (518)
14 PRK10459 colanic acid exporter 100.0 6.2E-28 1.3E-32 243.6 47.1 398 35-461 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 9.1E-26 2E-30 227.3 40.9 392 33-446 3-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 8.3E-21 1.8E-25 187.3 28.0 208 252-463 13-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 1.1E-20 2.4E-25 186.4 28.2 207 252-461 5-211 (441)
18 PRK00187 multidrug efflux prot 99.9 2E-20 4.3E-25 186.3 27.5 206 251-461 5-214 (464)
19 PRK10189 MATE family multidrug 99.9 3.1E-20 6.7E-25 185.0 27.4 205 253-461 26-236 (478)
20 PRK09575 vmrA multidrug efflux 99.9 5.1E-20 1.1E-24 183.1 26.3 208 252-462 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.3E-19 2.7E-24 181.2 28.5 207 252-462 8-218 (456)
22 TIGR01695 mviN integral membra 99.8 9.4E-17 2E-21 162.9 32.3 205 32-238 219-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 3.9E-16 8.5E-21 145.1 33.4 270 39-324 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 2E-16 4.3E-21 152.3 26.9 194 264-461 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 3.2E-18 6.9E-23 145.8 9.8 162 264-427 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 3.2E-15 7E-20 147.8 30.6 205 32-238 194-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 2.3E-15 5E-20 152.2 25.6 203 30-237 219-433 (488)
28 PF01554 MatE: MatE; InterPro 99.7 1.3E-17 2.8E-22 142.0 6.1 160 44-204 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 1.5E-13 3.3E-18 133.8 34.8 204 33-238 229-437 (518)
30 PRK10459 colanic acid exporter 99.7 2E-13 4.4E-18 138.0 34.4 200 32-237 203-404 (492)
31 PRK15099 O-antigen translocase 99.6 8.8E-14 1.9E-18 137.4 26.7 200 31-237 210-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 1.3E-12 2.7E-17 119.9 31.0 247 54-323 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 5.4E-13 1.2E-17 134.6 26.5 187 31-223 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 1E-08 2.3E-13 102.4 34.5 420 39-462 4-470 (549)
35 KOG1347 Uncharacterized membra 99.2 8.7E-10 1.9E-14 108.5 20.0 205 252-461 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.2 2.9E-07 6.2E-12 86.1 34.5 414 34-461 6-448 (530)
37 PF07260 ANKH: Progressive ank 99.1 1.4E-06 3.1E-11 78.1 29.9 317 32-356 7-343 (345)
38 PF04506 Rft-1: Rft protein; 98.7 3.2E-06 6.8E-11 84.8 21.9 203 35-238 252-470 (549)
39 KOG2864 Nuclear division RFT1 98.4 0.0002 4.3E-09 67.6 22.5 202 35-238 238-449 (530)
40 PF14667 Polysacc_synt_C: Poly 98.4 5.5E-05 1.2E-09 62.7 17.6 79 158-238 2-80 (146)
41 PF14667 Polysacc_synt_C: Poly 98.3 5.8E-06 1.3E-10 68.6 10.3 79 380-462 2-80 (146)
42 PF01943 Polysacc_synt: Polysa 98.2 0.00042 9.1E-09 64.0 21.4 188 259-461 2-190 (273)
43 PF07260 ANKH: Progressive ank 98.1 0.0019 4.2E-08 58.5 22.4 160 252-417 7-169 (345)
44 PF13440 Polysacc_synt_3: Poly 98.0 0.0023 4.9E-08 58.4 21.7 165 278-460 6-171 (251)
45 COG4267 Predicted membrane pro 97.8 0.035 7.6E-07 51.6 37.1 319 85-429 73-413 (467)
46 COG4267 Predicted membrane pro 82.0 49 0.0011 31.7 19.1 137 307-461 74-210 (467)
47 PF05975 EcsB: Bacterial ABC t 79.8 63 0.0014 31.5 18.3 63 329-396 89-151 (386)
48 TIGR00822 EII-Sor PTS system, 65.4 1.1E+02 0.0024 28.0 17.7 61 304-365 107-168 (265)
49 PF04505 Dispanin: Interferon- 52.5 79 0.0017 22.9 6.4 40 309-348 32-71 (82)
50 PF05684 DUF819: Protein of un 49.3 2.6E+02 0.0057 27.2 11.8 13 350-362 62-74 (378)
51 KOG4694 Predicted membrane pro 47.7 1.4E+02 0.0031 24.2 7.4 11 419-429 95-105 (174)
52 COG1377 FlhB Flagellar biosynt 43.9 3E+02 0.0066 26.4 13.7 28 456-483 208-235 (363)
53 PF05313 Pox_P21: Poxvirus P21 36.7 1.9E+02 0.0042 24.4 6.9 27 212-238 135-161 (189)
54 KOG2468 Dolichol kinase [Lipid 35.1 4.6E+02 0.01 26.0 13.5 73 262-343 379-451 (510)
55 PF14184 YrvL: Regulatory prot 31.6 2.7E+02 0.0059 22.3 13.1 104 118-223 6-110 (132)
56 PRK10739 putative antibiotic t 30.6 3.6E+02 0.0078 23.4 9.4 61 318-382 21-81 (197)
57 PF03904 DUF334: Domain of unk 27.3 2.3E+02 0.0051 24.9 6.2 39 108-146 142-180 (230)
58 PF03547 Mem_trans: Membrane t 26.7 4.6E+02 0.01 25.3 9.4 15 340-354 33-47 (385)
59 KOG1330 Sugar transporter/spin 25.7 4.6E+02 0.0099 26.4 8.6 35 49-83 38-72 (493)
60 PF01914 MarC: MarC family int 25.3 4.6E+02 0.0099 22.9 11.7 61 318-382 21-81 (203)
61 PRK11111 hypothetical protein; 24.7 4.9E+02 0.011 23.0 9.3 61 319-383 28-88 (214)
62 PRK06298 type III secretion sy 23.8 6.6E+02 0.014 24.2 16.9 19 372-390 137-155 (356)
63 PRK09108 type III secretion sy 23.1 6.8E+02 0.015 24.1 16.8 21 372-392 138-158 (353)
64 TIGR00427 membrane protein, Ma 23.0 5.1E+02 0.011 22.6 9.3 62 318-383 24-85 (201)
65 PF04505 Dispanin: Interferon- 22.9 3E+02 0.0065 19.9 6.1 35 97-131 41-75 (82)
66 TIGR00881 2A0104 phosphoglycer 22.4 6.5E+02 0.014 23.6 11.9 13 432-444 145-157 (379)
67 TIGR03141 cytochro_ccmD heme e 22.0 2.1E+02 0.0046 17.8 4.4 13 440-453 9-21 (45)
68 PRK08156 type III secretion sy 21.8 7.4E+02 0.016 24.0 16.1 25 459-483 199-223 (361)
69 TIGR00328 flhB flagellar biosy 21.3 7.4E+02 0.016 23.8 17.1 19 372-390 136-154 (347)
70 PRK09546 zntB zinc transporter 21.0 3.2E+02 0.007 25.8 6.8 18 447-464 306-323 (324)
71 COG4736 CcoQ Cbb3-type cytochr 21.0 2.8E+02 0.006 18.8 4.5 8 478-485 48-55 (60)
72 PRK10995 inner membrane protei 20.9 5.9E+02 0.013 22.5 8.7 59 318-380 25-83 (221)
73 COG1173 DppC ABC-type dipeptid 20.6 6.9E+02 0.015 23.2 9.8 23 257-279 193-215 (289)
74 TIGR00383 corA magnesium Mg(2+ 20.1 3.2E+02 0.007 25.6 6.6 18 447-464 300-317 (318)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=7.4e-56 Score=435.44 Aligned_cols=434 Identities=26% Similarity=0.398 Sum_probs=410.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (491)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 110 (491)
.++..|+++++++|+++++++..+++.+|++++||++++++++.+++.++..+ ...+..|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 56689999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186 111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (491)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (491)
++++..++++.++++++++..++ +++.++++.+++.++++.+.+..|+++..++.|+..+...+.+.+|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777765 89999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hC-CCcchhHHHHHHHHHHHHHHHHHHHHhcCC--CccCCCCchhhhcchHHHHHHHHHH
Q 011186 190 VSLVGLLVNVLTSWLFVYV-LD-FGVVGAALALDISWWVLCFGLYGYAAFGGC--PLTWSGFSTQAFSGLWEYTKLSVAA 265 (491)
Q Consensus 190 ~~i~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~p~ 265 (491)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..+++.+++. .....+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 57 999999999999999999999999888752 3333334455668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHH
Q 011186 266 GVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQST 345 (491)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (491)
+++++.+...+...+.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|++|++++|+..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH
Q 011186 346 LIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 425 (491)
.++...+++++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.+||.||+|.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011186 426 FLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAG 469 (491)
Q Consensus 426 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
+++..+. +|..|+|++.. .++.+..++..+++++++|+++..
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 450 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAV 450 (455)
T ss_pred HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999433 99999999999 999999999999999988888643
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.5e-51 Score=408.96 Aligned_cols=431 Identities=17% Similarity=0.205 Sum_probs=397.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchH
Q 011186 33 IESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (491)
Q Consensus 33 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 112 (491)
+..|++++.++|.++++++..+++.+|+.+++++|++++++++++.++..+ ...+..|++++..+.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 458999999999999999999999999999999999999999999999888 7888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186 113 GIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLG--QPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (491)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (491)
++..+.++.++..++++..++ +.+.++++.++. .|+|+.+.+..|+++..++.|+..+....++++|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999888776 778889999884 68899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCcchhHHHHHHHHHHHHHHHHHHHHhc-C--CCccCCC-CchhhhcchHHHHHH
Q 011186 190 VSLVGLLVNVLTSWLFVYVL----DFGVVGAALALDISWWVLCFGLYGYAAFG-G--CPLTWSG-FSTQAFSGLWEYTKL 261 (491)
Q Consensus 190 ~~i~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~l~~~ 261 (491)
.+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +...+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999743 68999999999999999888776666543 2 1222222 112345789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 011186 262 SVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV 341 (491)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
|.|.+++.........+.+.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|++|++++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999888888889887 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 011186 342 AQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG 421 (491)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 421 (491)
++++.+++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 011186 422 LPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKE 467 (491)
Q Consensus 422 i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
+|+.+++....++|+.|+|++.. +++.+..++..+++++.+|+++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccC
Confidence 99999998777899999999999 9999999999999999999884
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.7e-50 Score=401.47 Aligned_cols=426 Identities=20% Similarity=0.270 Sum_probs=389.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccch
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++++..+.++|++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 4579999999999999999999999999999999999999999999999988 677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011186 112 LGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVS 191 (491)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (491)
+++..+.++.+...++++..++..+.+|++.+++.|+|+.+.+..|+++..++.|+..+....++++++.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998877775677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh----CCCcchhHHHHHHHHHHHHHHHHHHHHhcCC--CccC-CCCchhhhcchHHHHHHHHH
Q 011186 192 LVGLLVNVLTSWLFVYVL----DFGVVGAALALDISWWVLCFGLYGYAAFGGC--PLTW-SGFSTQAFSGLWEYTKLSVA 264 (491)
Q Consensus 192 i~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~p 264 (491)
+++.++|+++++++++.+ ++|+.|+++|+.+++.+..+.+.+++++++. +.+. ++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999742 4799999999999988887766666665421 1111 11223345678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHH
Q 011186 265 AGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQS 344 (491)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (491)
.+++++++...+.+++.+++++| ++++|+++++.++..+..++..+++++..+.+++++|++|++++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHhhhhcCC--Ch---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 011186 345 TLIGLILCVIIMILHDKVALIFTS--SN---DVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYI 419 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 419 (491)
+.++++.+++++++++++.+++++ |+ |+.+.+..++++.+++.++..++.+..+++++.||+|.++++++.+.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 420 IGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 420 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+++|+.+++.+.+++|+.|+|+++. +++.+..++...+++.
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999877899999999999 9999998877766644
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=383.30 Aligned_cols=423 Identities=19% Similarity=0.173 Sum_probs=372.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 110 (491)
++..|++++.++|.++++++..+++.+|+.+++|+ |++++++++++.++..+ ...+..+++.+..+.++|++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34589999999999999999999999999999999 78899999999999998 67788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186 111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (491)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (491)
++++..++++.+++.++++..++ ..+.++++.+++.++++.+.+..|+++..++.|+..+...+.+++|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888766 67888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcC-CC-ccCCCCchhhhcchHHHHHHHHHHHH
Q 011186 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGG-CP-LTWSGFSTQAFSGLWEYTKLSVAAGV 267 (491)
Q Consensus 190 ~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~p~~~ 267 (491)
.++++.++|+++++++++.+++|+.|+++||.+++.+..++..+++.+++ .+ .+.+.++...++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999998888777766542 11 11111111112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 011186 268 MLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLI 347 (491)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (491)
++..+...+.+.+.+++++| ++++|+|+++.++.++.+++..+++++..|.+++++|++|++++|+..+++.++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 7799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCC---cchhHHHHHHHHHHHHHHH
Q 011186 348 GLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGW---QATVAYINLGCYYIIGLPL 424 (491)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 424 (491)
+...+++++++++++..+|++|+|+.+.+..++++.++..+......+....+++.+| +|.++++++.+.|+..
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~--- 398 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTL--- 398 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999999999999999999988764433344444445555554 9999999999876422
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011186 425 GFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEK 466 (491)
Q Consensus 425 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
+.. +.+|..|+|++.. +++.++.++..++++++ |++
T Consensus 399 --~~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 399 --LTL--PWLGNHGLWLALT-VFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred --HHH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHHH-Hhc
Confidence 222 4579999999999 99999999888776664 754
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.7e-48 Score=386.37 Aligned_cols=434 Identities=21% Similarity=0.381 Sum_probs=396.5
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCc
Q 011186 29 SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKR 108 (491)
Q Consensus 29 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 108 (491)
++.++..|++++.++|.+++++...+++.+|..+++++|++++++++++.++... ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4557789999999999999999999999999999999999999999999998776 667888999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHH
Q 011186 109 YHMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (491)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (491)
+++.++..+.++.+.+.+++++.++ +.+.++++.+++.+++..+.+..|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999888776 667788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCC--c-cCCCCchhhhcchHHHHH
Q 011186 188 AWVSLVGLLVNVLTSWLFVYV----LDFGVVGAALALDISWWVLCFGLYGYAAFGGCP--L-TWSGFSTQAFSGLWEYTK 260 (491)
Q Consensus 188 ~~~~i~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~ 260 (491)
++.++++.++|+++++++++. .++|+.|+++++.+++++..++..++.++++.. . .+.++...+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999863 247999999999999999998887777654211 1 111222334567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 011186 261 LSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVS 340 (491)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~ 340 (491)
.++|.+++...+...+.++..+++++| ++++++++++.++.++..++..+++.+..+.+++++|++|++++|+..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 011186 341 VAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYII 420 (491)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 420 (491)
.++++.++++.+++++.+++++..+|++|+|+.+.+..++++..+..++.+++....+++++.||++.++..++.+.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011186 421 GLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEK 466 (491)
Q Consensus 421 ~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
.+|+.+++...+.+|+.|+|+++. +++.+..++..+++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777899999999999 999999998888887765554
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.7e-48 Score=386.77 Aligned_cols=424 Identities=18% Similarity=0.214 Sum_probs=387.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 110 (491)
++..|++++.++|.+++++...+++.+|+.+++|+ |++++++++++.++..+ ...+..+++.+..+.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 34689999999999999999999999999999997 99999999999999998 67788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186 111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (491)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (491)
++++..+.++.++..++++..++ ..+.++++.+++.+++..+.+..|+++..++.++..+......++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999888776 77899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCC-CCchhhhcchHHHHHHHHHHHHH
Q 011186 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWS-GFSTQAFSGLWEYTKLSVAAGVM 268 (491)
Q Consensus 190 ~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~p~~~~ 268 (491)
.++.+.++|+++++++++.+++|+.|+++++.+++.+..++..+++++++.+.+++ +..+.+++.+|++++.|.|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999887899999999999999999988777776553222221 11123456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHH
Q 011186 269 LCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIG 348 (491)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (491)
.....+...+.+.+++++|+ ++++|+++++.++..+..++..+++++..|.+++++|+||+|++++..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhHhhhhcCC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHH
Q 011186 349 LILCVIIMILHDKVALIFTS-SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 427 (491)
++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.+++++..+..+.+++.||++.++..++.. +.+++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999876 4789999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 428 IGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 428 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+. +.+|+.|+|+++. +++.+..++..+++++
T Consensus 405 l~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LP--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR 435 (453)
T ss_pred HH--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH
Confidence 87 5589999999999 9999988877766654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1e-36 Score=308.71 Aligned_cols=413 Identities=15% Similarity=0.127 Sum_probs=348.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhccCccchHHH
Q 011186 38 LWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVEL-AAISIANTVIVGFNFGLL-LGMASALETLCGQAFGAKRYHMLGI 114 (491)
Q Consensus 38 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~ 114 (491)
+.|.+.-.++++++..+++++|.++++|+ |++++ ++++++.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 57888999999999999999999999995 99999 899999999977333333 568888777776653322 56676
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011186 115 YMQRSWIVLFLFCF-LLLPF-YVFATPLLKLL--GQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (491)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (491)
...++.......+. +..++ +.+.+++..++ +.+++..+.+..|++++.++.++..+....++++|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 67666655554443 33444 66777777877 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhH--HHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHH
Q 011186 191 SLVGLLVNVLTSWLFVYVLDFGVVGAA--LALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVM 268 (491)
Q Consensus 191 ~i~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 268 (491)
+++..+++++..+++. .++|..|++ +++++++.+..++..++.++++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 9999888776543333 468999988 999999999888777666654322211 111 2346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 011186 269 LCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMM-IPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLI 347 (491)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (491)
+....+...+|+.+.+.++ ++++++|+.+.++.+++.. +..+++++..|.++++++++|+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998866655 6789999999999988764 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHhhhhcCC----ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 011186 348 GLILCVIIMILHDKVALIFTS----SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (491)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (491)
++|.++++++++++++.++.+ |+|.++.+..+++++++..++.++..+..+.+++.||+|.+++.++... +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999976 5577889999999999999999999999999999999999999999986 88999
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 424 LGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 424 l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
+++++. +.+|..|+|+++. +++.+..++..++++|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999998 7899999999999 99999998888777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.6e-36 Score=304.86 Aligned_cols=414 Identities=14% Similarity=0.150 Sum_probs=347.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHHH
Q 011186 39 WQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQ 117 (491)
Q Consensus 39 ~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 117 (491)
.|.+.|.+++++...+.+++|..+++|+ |++++|+++.+.++..++......|++++..+.++++.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4778999999999999999999999996 999999999999998884554567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 011186 118 RSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLL 196 (491)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 196 (491)
.++.+....+++..++ ..+.+++...++++++. ..++++..+..++..+.....+++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888776 56666666666665543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----hCCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCCcc--CCCCchhhhcchHHHHHHHHHHHHH
Q 011186 197 VNVLTSWLFVYV-----LDFGVVGAALALDISWWVLCFGLYGYAAFG-GCPLT--WSGFSTQAFSGLWEYTKLSVAAGVM 268 (491)
Q Consensus 197 ~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~p~~~~ 268 (491)
+++++...++.. .++++.|+++++.+++.+..++..++.+++ +.+.+ +.+....+++..|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776666542 134678888999999888888776665543 21211 1111223456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Q 011186 269 LCLENWYYRILILMTGYLKN-----AT---LAVDAL-SVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIV 339 (491)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~ 339 (491)
++...+...+|+.++++... .. ...+.| +++.++.+++..+..+++++..|.++++++++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988875421 01 223333 3566778888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 011186 340 SVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYI 419 (491)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 419 (491)
..++...++.|.++++.+++++++.++.++++ +.++++++++..++..+..+..+.+++.||+|.+++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999886543 678899999999999999999999999999999999999986 8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 420 IGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 420 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
+++++++++...+.+|..|+|+++. +++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999988876557899999999999 99999999888888764
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.4e-36 Score=287.80 Aligned_cols=337 Identities=29% Similarity=0.512 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHHHHHHHHH
Q 011186 44 PAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVL 123 (491)
Q Consensus 44 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 123 (491)
|.+++++...++..+|+.+++++|++++++++++.++..+ ...+..|++++..+.+++++|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 011186 124 FLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTS 202 (491)
Q Consensus 124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~ 202 (491)
..++++..++ ..+.+++..+++.+++..+.+..+++++.+..++..+.....+++++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888876 778888888888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhC-CCcchhHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011186 203 WLFVY-VLD-FGVVGAALALDISWWVLCFGLYGYAAFG-GCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRIL 279 (491)
Q Consensus 203 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~ 279 (491)
++++. .++ +|+.|+++++.+++++..++..++.+++ +.+.+++.....+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 667 8899999999999999888877776653 33332222223345678999999999999999999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011186 280 ILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILH 359 (491)
Q Consensus 280 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (491)
+.+++.++ ++++++|+++.++.++...+..+++++..|.++++++++|.++.++..+++.++.+.++++.+.++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhcCCChHHHHHHHHHHHHH
Q 011186 360 DKVALIFTSSNDVLAEVDKLSFLL 383 (491)
Q Consensus 360 ~~i~~l~~~~~~~~~~~~~~l~~~ 383 (491)
+++.++|.+|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=293.45 Aligned_cols=449 Identities=43% Similarity=0.722 Sum_probs=425.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (491)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 110 (491)
.+...|++++++.|..+..+.+.+.+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36788999999999999999999999999999999999999999999999998788899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011186 111 MLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (491)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (491)
......+++..+....+++...++.+.+|+...+++++++...+..|.++..+..+..........+++++++.....+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHH
Q 011186 191 SLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLC 270 (491)
Q Consensus 191 ~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 270 (491)
.....++++.+++++++..++|..|++++..+++.+.......|......+..|..++.+ ++.+++++++++|.+++..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999888888766556666666666 7899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 011186 271 LENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLI 350 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (491)
++.+.+.+..+..+.+++...++++.++..++....++++.+++.+...++++.+|++|++++|...+.....++.++..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011186 351 LCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGW 430 (491)
Q Consensus 351 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 430 (491)
.+..+....+.+..+|++|+|+.+...+..+++++..++++.+.+..+..++.|+.+...++++.+.+++++|....+.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcccCCC
Q 011186 431 VFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWSNP 481 (491)
Q Consensus 431 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (491)
..++|..|.|.++. .+..++.........+.+|++..++.+.+...+..+
T Consensus 422 ~~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 422 FTKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EEecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 78899999999999 998888888888888889999999988887766544
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3.1e-34 Score=282.75 Aligned_cols=403 Identities=13% Similarity=0.021 Sum_probs=340.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHH
Q 011186 38 LWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYM 116 (491)
Q Consensus 38 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 116 (491)
+.|.+.+...+.++..+.+++...+++|+ ||+++|.++..+++...+......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 57888899999999999999999999997 9999999999999999756656888888888889887 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 011186 117 QRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL 195 (491)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 195 (491)
++++.+.+..++++.++ +.+.+|+...++.+++. ..+..+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776 77888888877766642 23455666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCC-CccCCCCchhhhcchHHHHHHHHHHHHHHHHHHH
Q 011186 196 LVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGC-PLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENW 274 (491)
Q Consensus 196 ~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 274 (491)
++|+.+ +++... ..|+.|+++++++++.+..+...++.++++. +.+..+.+ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444433 2499999999999999988777666665422 11111122 2456789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 011186 275 YYRILILMTG-YLKNATLAVDALSVCMSINGW-QMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILC 352 (491)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (491)
....++.+++ .+| ++++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 655 7899999999999875 4789999999999999985 6788999999999999999999999
Q ss_pred HHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011186 353 VIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVF 432 (491)
Q Consensus 353 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 432 (491)
+++++++++++.++.+|+ ++++.++++++++..++...+......+.+.++++......+.. .++++++++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999866 77789999999999999888888877777888888777777775 489999999999 8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011186 433 KLGVGGIWGGMIFGGTFVQTVILAIITA 460 (491)
Q Consensus 433 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 460 (491)
.+|..|+++++. +++.+..++......
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~ 410 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFL 410 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999 999999987766554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.8e-29 Score=248.91 Aligned_cols=386 Identities=15% Similarity=0.151 Sum_probs=336.0
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhccCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011186 66 LGDV-ELAAISIANTVIVGFNFGLL-LGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLK 142 (491)
Q Consensus 66 lg~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (491)
+|.+ +..+|.++.++..++...+. .+++++..|..++.. ++++|+.++..+....+....+++++++ +++++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 56799999999998544444 568999999999998 7888999999998888888777777766 788888888
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC---cchhH
Q 011186 143 LL--GQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFG---VVGAA 217 (491)
Q Consensus 143 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~g~a 217 (491)
.+ +.+++..+.+..++++..+..++..+..++.+++++++|+..+....++.++..++..+++... +| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 4467888999999999999999999999999999999999999999988887766654444433 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 011186 218 LALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALS 297 (491)
Q Consensus 218 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 297 (491)
++..++.++..++.....+|...+.+.+ ++.+ .+..|++++...|..+.....++...+++.+.+.++ +..+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 9999999999988888777664442221 2211 246899999999999999999999999999999887 66888999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCC----ChHH
Q 011186 298 VCMSINGWQM-MIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTS----SNDV 372 (491)
Q Consensus 298 ~~~~i~~~~~-~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 372 (491)
.+.++.+++. .+..+++++..|.+++...++|.++.++..++.++....+.+|.+++++.+++++++++.. |+|.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999987 6678999999999999999999999999999999999999999999999999999999852 5566
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 011186 373 LAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQT 452 (491)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~ 452 (491)
.+.....+++++++.++.++...+...+++.||+|.++..++.+. ++++.+++++. +.+|..|+++++. ++..+..
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~ 393 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATS-LSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 788999999999999999999999999999999999999999986 89999998888 8999999999999 9999999
Q ss_pred HHHHHHHHhc
Q 011186 453 VILAIITARC 462 (491)
Q Consensus 453 ~~~~~~~~~~ 462 (491)
++..+.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888888876
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=4.1e-28 Score=234.52 Aligned_cols=420 Identities=12% Similarity=0.066 Sum_probs=351.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-Ch-hHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhccCccch
Q 011186 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GD-VELAAISIANTVIVGFNFGLL-LGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
..+++|.++......+++.+.+++...+++.+ |+ ..-.++.++.++.+++--.+. ..++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 45677778888888889999999988888885 88 467899999999998544443 4468999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHH-cCC--ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHH
Q 011186 112 LGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKL-LGQ--PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (491)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (491)
.++..+........+.+..+++ .+++++++.. .+. +++....+....+++.+..++.++.....+.+++.+|+..+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7777777775666666566555 6667777734 333 23333367888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHH
Q 011186 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGV 267 (491)
Q Consensus 188 ~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 267 (491)
....+..++.-+.....+..+......+.++++.++-+++.++.+..++|.+...+.+ +..++ +.+|++.+.-.|..+
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~~-~~lk~~~~~~~p~~l 243 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFKD-PGLKRFLKLMLPALL 243 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCCc-hhHHHHHHHHHHHHH
Confidence 9999998888875555555432224778899999999999999988888764332222 21221 578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHH
Q 011186 268 MLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTL 346 (491)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (491)
+....+++..+++.+.+.+. +-.++.+..+.++.+++. ++..+++++..|.++++..++|.++.++..+.+++.+..
T Consensus 244 ~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 557789999999999998 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHhhhhcCC----ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 011186 347 IGLILCVIIMILHDKVALIFTS----SNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGL 422 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 422 (491)
+++|.++++..+++++++++.. +++......+.+..++++.++..+..++...+++.+|+|.|+++.+++. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 9999999999999999999853 3444667889999999999999999999999999999999999999986 9999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 423 PLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 423 ~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
.+++.+. +.+|..|.+.+.. ++..+.+.+.++..+|+
T Consensus 401 ~l~~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 401 LLNLLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9997777 8899999999999 99888888888887776
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=6.2e-28 Score=243.55 Aligned_cols=398 Identities=9% Similarity=0.059 Sum_probs=322.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHH
Q 011186 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLG 113 (491)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 113 (491)
.++..+.+.+..++++...+.+++...+++|+ ||+++|.++.+..+..++......|++++. .|. ++++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccCC--H
Confidence 46788999999999999999999999999996 999999999999999986667778888874 232 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011186 114 IYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSL 192 (491)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 192 (491)
+..+..+.+....++++.++ +.+.+++..+++ +++. ...+++..+..++..+.....+.++..++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566666666666555 444555545544 3332 34567777777888888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHHHH
Q 011186 193 VGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLE 272 (491)
Q Consensus 193 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~ 272 (491)
...+...++...+.. .++|+.+.+++..+++.+..+...+.. +++.++++ + .+++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~---~-~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL---H-FSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc---e-ecHHHHHHHHhhhHHHHHHHHHH
Confidence 888888777766654 478999999999999887765443322 22222211 1 12356899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 011186 273 NWYYRILILMTGYLKNATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLIL 351 (491)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (491)
.+...+|+.+++.+.+ ++++|.|+.+.++.+++. .+...++++..|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 889999999999998865 45556788999999885 5788999999999999999999999
Q ss_pred HHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011186 352 CVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWV 431 (491)
Q Consensus 352 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 431 (491)
++++.+++++++.++.+++ +.++...++++++..++..+..+....+++.||+|..+..+++.. ++.+|..+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~-- 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG-- 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--
Confidence 9999999999999998765 888999999999999999999999999999999999999998876 78888877777
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 432 FKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 432 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+.+|..|+++++. +++.+..++..+..+|
T Consensus 376 ~~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7789999999999 9999988888877744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=9.1e-26 Score=227.28 Aligned_cols=392 Identities=15% Similarity=0.107 Sum_probs=309.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccch
Q 011186 33 IESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 33 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
+..+++.|.+.....+++...+.+++....++|+ ||+++|.++.+.++..++......|+..+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 3568889999999999999999999999999996 999999999999999997777789999998888888755444444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011186 112 LGIY-MQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWV 190 (491)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (491)
.... ...........+.+.........+. ++ .....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4443 3444444333333333322222222 11 22344677888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHH
Q 011186 191 SLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLC 270 (491)
Q Consensus 191 ~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 270 (491)
.+.. ..-......+.. .......++...+......+...+..+++....+...+. .++..|++++++.|....+.
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHH
Confidence 4444 111111112211 234445566666665555555444432211111111111 34688999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 011186 271 LENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLI 350 (491)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (491)
...+..++|+++++.+.+ ++++|.|+.+.++......+..+++++..|.+++...+++.++.++..++..++...+++|
T Consensus 228 ~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011186 351 LCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGW 430 (491)
Q Consensus 351 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 430 (491)
..+++.+++++++.++.+++ +..+...+.++++..++..+.......+++.|+++..++.+.++. ++++.++++++
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li- 382 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI- 382 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH-
Confidence 99999999999999998766 566899999999999999999999999999999999999999987 89999999998
Q ss_pred HhcCCcchhHHHHHHH
Q 011186 431 VFKLGVGGIWGGMIFG 446 (491)
Q Consensus 431 ~~~~g~~g~~~a~~~~ 446 (491)
+.+|..|++.+.. .
T Consensus 383 -~~~g~~g~~~a~~-~ 396 (480)
T COG2244 383 -PRFGLIGAAIATA-S 396 (480)
T ss_pred -HhhhhhhHHHHHH-H
Confidence 8899999999886 5
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=8.3e-21 Score=187.28 Aligned_cols=208 Identities=22% Similarity=0.250 Sum_probs=199.5
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGK 331 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~ 331 (491)
++..|+++++++|..++++.....+.+|++++++++ ++++|+-+++.++..+...+..+++.+..+.++|.+|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 357899999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHH
Q 011186 332 GAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAY 411 (491)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 411 (491)
++++..+.+....++++++..++..+++++++.++..++|+.+.+.+|+++..++.++..+.....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-c-CCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 011186 412 INLGCYYIIGLPLGFLIGWVF-K-LGVGGIWGGMIFGGTFVQTVILAIITARCD 463 (491)
Q Consensus 412 ~~~~~~~~~~i~l~~~l~~~~-~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 463 (491)
+++++. ++|+.+++++++.. . +|+.|+++|+. +++.+..++..+++.|++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~-ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATV-IARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 999987 99999999999763 4 99999999999 999999999888888765
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1.1e-20 Score=186.43 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=193.8
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGK 331 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~ 331 (491)
++..|+++++++|..++++...+...+|+.+++++++ ++++|+.+++.++.++...+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3568899999999999999999999999999999853 778999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHH
Q 011186 332 GAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAY 411 (491)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 411 (491)
++++..+.++....+++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.......+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 412 INLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 412 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
.++++. ++++++++++.+..++|+.|+++|+. +++.+..++..+++.|
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999986 89999999998777899999999999 9999988776666654
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=2e-20 Score=186.31 Aligned_cols=206 Identities=19% Similarity=0.116 Sum_probs=188.6
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011186 251 AFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNG 330 (491)
Q Consensus 251 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~ 330 (491)
+++..|++++.++|.+++++.+.+...+|+.++++++ ++++++++++.++.++...+..+++++..|.+++++|++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3457899999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhH
Q 011186 331 KGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVA 410 (491)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (491)
+++++..+.++.+.+.++++..++.+ +.+++..+++.|+|+.+.+.+|+++..++.++..+.....+.+++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 411 YINLGCYYIIGLPLGFLIGWV----FKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 411 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+.++++. ++++++++++++. +++|+.|+++|+. +++....++..+++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~-i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTA-LVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 9999987 8899999998742 2589999999999 9988877666555554
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=3.1e-20 Score=184.98 Aligned_cols=205 Identities=20% Similarity=0.137 Sum_probs=191.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 011186 253 SGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKG 332 (491)
Q Consensus 253 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~ 332 (491)
+..|+++++++|.+++++...+...+|+.++++++ ++++|+++++.++..+...+..+++++..+.+++++|++|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35889999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcC--CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhH
Q 011186 333 AGFATIVSVAQSTLIGLILCVIIMILHDKVALIFT--SSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVA 410 (491)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (491)
+++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 411 YINLGCYYIIGLPLGFLIGWV----FKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 411 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
.+++... ++++++.+++.+. +++|+.|+|+|+. +++.+..++..+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~-is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLT-ISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 9999864 8999999998853 3789999999999 9999988876665543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=5.1e-20 Score=183.09 Aligned_cols=208 Identities=14% Similarity=0.071 Sum_probs=194.5
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGK 331 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~ 331 (491)
++..|++++.++|.+++++.+.+...+|+.+++++.+ ++++++++++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g-~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG-AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 3567999999999999999999999999999999632 789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHH
Q 011186 332 GAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAY 411 (491)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 411 (491)
+.++..+.+..+..+++++.+++...+++++..++..|+++.+.+.+++++.+++.++..+.......+++.||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 412 INLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 412 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
.++.+. +++++++++++..+++|+.|+++|+. +++.+..++..++++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~-is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATA-LAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 999986 99999999998767899999999999 99999988877666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=1.3e-19 Score=181.17 Aligned_cols=207 Identities=15% Similarity=0.081 Sum_probs=192.7
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGK 331 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~ 331 (491)
++..|+++++++|.+++++...+...+|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 467899999999999999999999999999999986 778999999999988888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHH
Q 011186 332 GAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAY 411 (491)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 411 (491)
+.++..+.++.+.+.++++.+++++++++++..++..|+|+.+.+.+++++.+++.++..+.....+.+++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 412 INLGCYYIIGLPLGFLIGWV----FKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 412 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
.+.++. ++++++++++++. +.+|+.|+++++. +++.+..++..++++|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~-is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATA-IVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 999986 8899999888742 4689999999999 99999998887776654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=9.4e-17 Score=162.93 Aligned_cols=205 Identities=17% Similarity=0.129 Sum_probs=184.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccch
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
++..|++++.+.|..+++....+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.++++++++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999886656999999999999999874445678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhH
Q 011186 112 LGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQ----PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (491)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (491)
.++..+++..+...++++..++ ..++++++.++.+ +++.++.+..++++++++.++..+.......+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999888876 7788999987755 4567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 187 IAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 187 ~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
+++.++...+++++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998865 8999999999999999988877777654
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=3.9e-16 Score=145.12 Aligned_cols=270 Identities=17% Similarity=0.155 Sum_probs=206.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHHH
Q 011186 39 WQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQ 117 (491)
Q Consensus 39 ~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 117 (491)
.|.+.....++++..+.+++...+++|+ |++++|.++.+..+.+++......|++++..+.++++..+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 5778889999999999999999999996 9999999999999999856667899999988888876322 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 011186 118 RSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLV 197 (491)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 197 (491)
.........+++..+..... ..++.++.. ..+........++........+++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444433333322221 233333321 1122222222256778888999999999999999999999988
Q ss_pred HHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 011186 198 NVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYR 277 (491)
Q Consensus 198 ~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~ 277 (491)
..++...++.. +.+..+..++..++..+...+..++.+|+. +.+ .+..+++..|++++++.|..++++...+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666653 345888999999998888877777776542 221 2222256889999999999999999999999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011186 278 ILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANE 324 (491)
Q Consensus 278 ~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~ 324 (491)
.|+.+++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999875 89999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.77 E-value=2e-16 Score=152.29 Aligned_cols=194 Identities=21% Similarity=0.226 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHH
Q 011186 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ 343 (491)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~ 343 (491)
|.+++++...+...+++.++++++ ++++++|+++.++..+...+..+++++..|.+++++|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999987 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 011186 344 STLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (491)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (491)
...++++.+++++++++++..++..|++..+.+..+++++++..++.++.......+++.||.+.+...++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999986 88888
Q ss_pred HHHHHHH-Hhc-CCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 424 LGFLIGW-VFK-LGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 424 l~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+++++.. ..+ +|+.|+++++. +++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 8888874 334 66999999999 9999988887776665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=3.2e-18 Score=145.80 Aligned_cols=162 Identities=23% Similarity=0.382 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHH
Q 011186 264 AAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ 343 (491)
Q Consensus 264 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~ 343 (491)
|.+++++.+.+.+.+++.++++++ ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 011186 344 STLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLP 423 (491)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 423 (491)
...++++.++.+.++++++..++++|+|+.+.+.+++++..+..++..+.....+++++.||++.+++.++...|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011186 424 LGFL 427 (491)
Q Consensus 424 l~~~ 427 (491)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.74 E-value=3.2e-15 Score=147.83 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=189.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccch
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
.+..|++++...|..++....++...+|+.+.+++++..+++++.+.++.++....+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34689999999999999999999999999999999999999999999999986777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhH
Q 011186 112 LGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQ----PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQV 186 (491)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (491)
.++..++++.....+.++.++. ..+++|++..+.. +.+..+.+...+++++++.++..+..++...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999886 8899999976542 5666788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 187 IAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 187 ~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
++..++++.++|++++.++... +|..|.++++.++..+.+++..++.+|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888866 8999999999999999998888877765
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=2.3e-15 Score=152.22 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-Chh---------HHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 011186 30 RVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDV---------ELAAI-SIANTVIVGFNFGLLLGMASALET 98 (491)
Q Consensus 30 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~---------~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~ 98 (491)
..++..|++++.++|.+++++...+...+|+.+++++ +++ .+|.+ +.+.++..+ ...+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999884 322 22333 345566666 45678899999999
Q ss_pred HHHhHhccCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011186 99 LCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRF 177 (491)
Q Consensus 99 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 177 (491)
.++++.|++|+++.++..++...+...++++..++ ..++++++.++.+++ .+..+++++++..++........+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776 778888888776543 2567889999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011186 178 LQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAF 237 (491)
Q Consensus 178 l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 237 (491)
+++.||++..++.++...+++++++++++....+|+.|+++++.+++++..++..++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988874345899999999999999998887776654
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.3e-17 Score=142.01 Aligned_cols=160 Identities=25% Similarity=0.386 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHHHHHHHHH
Q 011186 44 PAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVL 123 (491)
Q Consensus 44 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 123 (491)
|.+++++...+...+|..+++++|++++++++++.++..+ ...+..|++++..+.++|++|++|+++.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH-HHHHHH
Q 011186 124 FLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGL-LVNVLT 201 (491)
Q Consensus 124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l 201 (491)
..+++++.++ ..+.+++..+++.++++.+.+..|+++..++.++..+.....+++++.||++..+..+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 78888899999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 011186 202 SWL 204 (491)
Q Consensus 202 ~~~ 204 (491)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.70 E-value=1.5e-13 Score=133.78 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=186.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchH
Q 011186 33 IESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHML 112 (491)
Q Consensus 33 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 112 (491)
...|++.+...|+.++....++...+|+.+.+.+.+...+.+..+..+.++..-.+..++++...|..|++..++|+++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57999999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHH
Q 011186 113 GIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQ----PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (491)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (491)
++..+.++.++.+++++.... ..+++|++..+.. +++....+...+....++.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999987 8899999976532 45567778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 188 AWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 188 ~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
+++.+++.++|+++++.+... +|..|.+.++.++.++++.++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999777754 7888899999999989988887777765
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=2e-13 Score=138.01 Aligned_cols=200 Identities=13% Similarity=0.033 Sum_probs=172.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH 110 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 110 (491)
++..|++++++.|...+++...++..+|+.+++++ |++++|.|+.++++..+....+...+++...|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 45789999999999999999999999999999997 9999999999999998744555556777888988885 67788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186 111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW 189 (491)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (491)
+.++.+++...+...++++..++ ..+++|++.++.+++ +..+...++++++...+..........+++.||++....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 88999999999999999988876 778899987766554 667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011186 190 VSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAF 237 (491)
Q Consensus 190 ~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 237 (491)
.+++..+++++..+.+... +|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888776666643 799999999999999888877776644
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=8.8e-14 Score=137.39 Aligned_cols=200 Identities=7% Similarity=-0.038 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCcc
Q 011186 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGH-LGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (491)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 109 (491)
.++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 45678999999999999999999999999999985 69999999999999988535778899999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHH
Q 011186 110 HMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (491)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (491)
++.++..+........++++..++ .+++++++.++.+++ ++.+.++++++++..++...+..+...+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999988888888777766 688999999887765 44567788888888888877777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011186 189 WVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAF 237 (491)
Q Consensus 189 ~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 237 (491)
...+...+++++++++++.. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999876 899999999999999998877655543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.63 E-value=1.3e-12 Score=119.93 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccchHHHHHHHHHHHHHHHHHHHHH
Q 011186 54 TMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLP 132 (491)
Q Consensus 54 ~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (491)
..+++...+++|. |++++|.++....+..++......|+.+.... . .++++++.++..+.........+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889996 99999999999999998555557777777444 2 2355566666666665554444433333
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011186 133 FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFG 212 (491)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g 212 (491)
+ ...+..++ .+++. ..++....+..++........+.+++++|.+.....++...+...++...+.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11122233 33322 23455666777888888999999999999999999999998888555544444 3458
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhH
Q 011186 213 VVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLA 292 (491)
Q Consensus 213 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
..+..++..+++++..+......+ ++ .+.++ +.+. ++.++.+.|..+.++........|..+++.+. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR-RK--LRLSF----KFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cc--cCCCc----hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 888888888888877665544222 21 11111 1122 24799999999999999999999999999944 3899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011186 293 VDALSVCMSINGWQM-MIPLAFLAATGVRVAN 323 (491)
Q Consensus 293 ~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 323 (491)
+|.|+++.++.+.+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.60 E-value=5.4e-13 Score=134.58 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCcc
Q 011186 31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY 109 (491)
Q Consensus 31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 109 (491)
.++..|+.++.++|...+.+...+.+.+|+.+++++ |++++|.|+.+.++... ...+...++.+..|..++...++++
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 467899999999999999999999999999999997 99999999988888888 7778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHH
Q 011186 110 HMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA 188 (491)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (491)
++.++..++...+....+++..++ ..+++|++..+.+++ +..+...++++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 778889998766654 23367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHH
Q 011186 189 WVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDIS 223 (491)
Q Consensus 189 ~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~ 223 (491)
..+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999965 7889999988 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.34 E-value=1e-08 Score=102.37 Aligned_cols=420 Identities=10% Similarity=-0.009 Sum_probs=249.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhHhccCccchHHHHH
Q 011186 39 WQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVG-FNFGLLLGMASALETLCGQAFGAKRYHMLGIYM 116 (491)
Q Consensus 39 ~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 116 (491)
.+.+.-.++.+++..+.+++-+-++-|. +|+.+|..++=.-+..- .....=.++-.+..+.-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 4556677888999999998877777775 99999988665554432 233334455555333222221111222333333
Q ss_pred HHHHHHHHHHHHHHHHH-H-HhhHHH----HHHcCCC-hH---HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHhhcc
Q 011186 117 QRSWIVLFLFCFLLLPF-Y-VFATPL----LKLLGQP-DD---VAELSGTVAVWMIPLHFSFAF----QFPLTRFLQCQL 182 (491)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~ 182 (491)
+....+..+.++++..+ + +...|. ..+...+ ++ ........+.+...+.....+ ....+..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 33333333333322222 1 111111 1111111 11 011112222333334443333 334455555555
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh-hCCCc-----ch-hHHHHHHHHHHHHHHHHHHHHh-c--C---CCccCCCCch
Q 011186 183 KNQVIAWVSLVGLLVNVLTSWLFVYV-LDFGV-----VG-AALALDISWWVLCFGLYGYAAF-G--G---CPLTWSGFST 249 (491)
Q Consensus 183 ~~~~~~~~~i~~~~~~i~l~~~li~~-~~~g~-----~g-~a~a~~i~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~ 249 (491)
|.+.-........+++..+....... .+++. .+ +.++..++++...+........ . . .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 66666666666666665544443221 11111 11 2344455554444332211111 1 1 1111111111
Q ss_pred ---hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011186 250 ---QAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGY--LKNATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVAN 323 (491)
Q Consensus 250 ---~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 323 (491)
+....-+++.+........++...+...-|.+++.. +.+ .++-|.|++++++.+++. ++...+..+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111134789999999999999999999999999888 665 788899999999998875 7778899999999998
Q ss_pred hhcCCCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHH
Q 011186 324 ELGAGNG---------KGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQP 394 (491)
Q Consensus 324 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 394 (491)
...+++. ++..+.....++....+++.+...-...++.++.++.+++=.-..+...+++++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765543 3355566666677777766666666666777777776543222346889999999999999999
Q ss_pred HHHHHHHhcCCcchhHHHHH---HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186 395 VLSGVAIGSGWQATVAYINL---GCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARC 462 (491)
Q Consensus 395 ~~~~~l~~~g~~~~~~~~~~---~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 462 (491)
+...+.++....+.....+- +.. ++.+..++++... .+|..|..+|.. +.+.++.+....+.+|.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999988766543332 322 5667778888833 699999999999 99999999887777653
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.24 E-value=8.7e-10 Score=108.51 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=186.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGW-QMMIPLAFLAATGVRVANELGAGNG 330 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~~~~~~ 330 (491)
+++.|++.+++.|..+..+.+.....++..+.+++| +.++++.+++....+. -+.+..++..+..|..++.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 467899999999999999999999999999999998 5689999998888776 4567789999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhH
Q 011186 331 KGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVA 410 (491)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (491)
+.......++........++.+.. +.+.+++...+..|+++...+..+.++.....+-..........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888887754 5566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 411 YINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 411 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
++..... .+++++++++.+..++|..|++.+.. +++.+.......+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHhee
Confidence 9999986 99999999999999999999999999 9999988777666654
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.9e-07 Score=86.09 Aligned_cols=414 Identities=13% Similarity=0.026 Sum_probs=241.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhHhccC---c
Q 011186 34 ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHL-GDVELAAISIANTVIVG-FNFGLLLGMASALETLCGQAFGAK---R 108 (491)
Q Consensus 34 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~~~~---~ 108 (491)
...+-.+.+...+..+++..+.+++-+.++-|+ +++.+|..++-..+.+- .....=.++.-+ ....|.. +
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~ 80 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADT 80 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCcc
Confidence 455566677777788888888887766666665 99999998877666553 122222333333 2222222 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHH
Q 011186 109 YHMLGIYMQRSWIVLFLFCFLLLPFYV-FATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (491)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (491)
.++..+..+.+..+.....+.+.-+++ +....-.....+. ++ .-+.+...+.....+...+.-..|...+.+..
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~--y~---~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPL--YA---FAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCch--Hh---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345556666666666555544443321 1111100001111 11 11233444444444444455555566666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhh-CCCcchhHHHHHHHHHHHHHHHHHHHH-hcC-CCccCC---------CCchh--hh
Q 011186 188 AWVSLVGLLVNVLTSW-LFVYVL-DFGVVGAALALDISWWVLCFGLYGYAA-FGG-CPLTWS---------GFSTQ--AF 252 (491)
Q Consensus 188 ~~~~i~~~~~~i~l~~-~li~~~-~~g~~g~a~a~~i~~~~~~~~~~~~~~-~~~-~~~~~~---------~~~~~--~~ 252 (491)
....-+..++.-+..+ +++.+. .+++..-|+|.........+...+++. .++ .+...+ +.... ..
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 6666666666533332 233221 245555566666655444442222222 222 111111 00000 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh
Q 011186 253 SGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKN-ATLAVDALSVCMSINGWQM-MIPLAFLAATGVRVANELGAGNG 330 (491)
Q Consensus 253 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~~~~~~ 330 (491)
-.-++..+.-.......+...+...-+..+++.... .-.+-|.|.++++..++.. ++...+........++....++.
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~q 315 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQ 315 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccch
Confidence 122456666666666666677776666666663321 1235568999988887765 77788999999999999888887
Q ss_pred hhhHHHHH---HHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcc
Q 011186 331 KGAGFATI---VSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQA 407 (491)
Q Consensus 331 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 407 (491)
|+.|+... ..++....+++..+..-...++.++.++++++=.-..+...++++++..++.+++.+..++..+.+..+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 77766544 444444444444444444455667777766432222356899999999999999999999999988776
Q ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 408 TVAY---INLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 408 ~~~~---~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
.... ..++.. ++.+.+++++. ..+|..|...|.. +.+.++-+....+.++
T Consensus 396 qi~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 396 QIDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIRH 448 (530)
T ss_pred HHHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5533 233333 67778899999 7889999999999 9998888866555544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.06 E-value=1.4e-06 Score=78.12 Aligned_cols=317 Identities=14% Similarity=0.074 Sum_probs=191.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCc
Q 011186 32 WIESKKLWQIVGPAIFSRISSYTMNIITQAFAGH-L-GD-VELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKR 108 (491)
Q Consensus 32 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 108 (491)
....+.+.++-+|..++.+...+...+-+--++| - .+ +.+++|+++..+.-+ ...+...+.+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cch
Confidence 4568999999999999999999999999999987 4 33 459999999999988 6667777777655554 232
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchh
Q 011186 109 YHMLGIYMQRSWIVLFLFCFLLLPF-YV-FATPLL-KLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQ 185 (491)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (491)
+++ ++........+.....+..++ +- +...++ ..++.++++.+.+...+.++....++..+...+++++.-.+++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 222 222222222222222222222 22 233333 56788999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hC--CCcchhHHHHHHHHHHHHH--HHHHHHHhcCCCccCCCCchhhhcchHHHHH
Q 011186 186 VIAWVSLVGLLVNVLTSWLFVYV-LD--FGVVGAALALDISWWVLCF--GLYGYAAFGGCPLTWSGFSTQAFSGLWEYTK 260 (491)
Q Consensus 186 ~~~~~~i~~~~~~i~l~~~li~~-~~--~g~~g~a~a~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (491)
.....++......+++...++.. ++ .+..--.++...+..+-+. .+.++..-++..+........+...++++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 77777666666666655555531 11 1111111222222222211 1122212122222222233334457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh----
Q 011186 261 LSVAAGVMLCLENWYYRILILMTGY-LKNA---TLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKG---- 332 (491)
Q Consensus 261 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~---- 332 (491)
+..|.+.....+..+..+.+.++++ +++. +++++...+.+...-+.+-..+-+ .+..|..-++--.++..+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCc
Confidence 9999999999999999999999999 4432 356666555444433333222111 233333322211111111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHH
Q 011186 333 -AGFATIVSVAQSTLIGLILCVIIM 356 (491)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~ 356 (491)
.+...++....++.+++..+..++
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 133667777777777777776654
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.70 E-value=3.2e-06 Score=84.83 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=161.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCcc--
Q 011186 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGH--L-GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRY-- 109 (491)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~-- 109 (491)
-++.++.+.....+.++..+.+--|++++.. + +.++.|.|+++.++-++..-.+...+..+.....++...++++
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788899999999999999999999999999 7 8999999999999999877788888999888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 011186 110 -------HMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQ 181 (491)
Q Consensus 110 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 181 (491)
++..+.+...+.+...+++++..+ -..++.++.+++++.=....+...+++.+..+|+..++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 234566677777777777666665 566666777665433222335677899999999999999999999998
Q ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 182 LKNQVIAWVSLV---GLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 182 ~~~~~~~~~~i~---~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
...+.....+-. ..++.+..++++... ++|..|..+|.++...+-..++..+..+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665555544 456666777888765 78999999999999999988888877654
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=0.0002 Score=67.61 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=151.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccch
Q 011186 35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGHL---GDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHM 111 (491)
Q Consensus 35 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l---g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 111 (491)
-++..+......-+.++..+.+=-|.+++... +-++-|.|.++.++-+++.-.+...+......+.+|-..++++|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 45666777777788888889988899998853 667899999999988887777888888888888888888777666
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHH
Q 011186 112 LGI---YMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI 187 (491)
Q Consensus 112 ~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (491)
.++ ++...+.+...++++.... .-.+++++.+++++.=....+...+++.+..+|+..++.+..+++.+....+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 554 5556666666666555554 556677777777654333345577899999999999999999999998765544
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 188 A---WVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 188 ~---~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
- +...+..+..++++++++.. +|..|..+|.++...+.-+....+.++.
T Consensus 398 ~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34455577788889999977 6778888888888777666665555543
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.37 E-value=5.5e-05 Score=62.69 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=72.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011186 158 AVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAF 237 (491)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 237 (491)
+++++++.++..+....+..+++.||++..+..++++.++|+++++++++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999855 999999999999999998888777776
Q ss_pred c
Q 011186 238 G 238 (491)
Q Consensus 238 ~ 238 (491)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.31 E-value=5.8e-06 Score=68.62 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011186 380 SFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIIT 459 (491)
Q Consensus 380 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 459 (491)
+++++++.++.++.......+++.||+|..+..++++. ++++++++++. +++|..|+++++. +++.+..++..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999986 99999999998 9999999999999 99999999999888
Q ss_pred Hhc
Q 011186 460 ARC 462 (491)
Q Consensus 460 ~~~ 462 (491)
+|+
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 886
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.20 E-value=0.00042 Score=64.01 Aligned_cols=188 Identities=18% Similarity=0.125 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhhhHHHH
Q 011186 259 TKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMI-PLAFLAATGVRVANELGAGNGKGAGFAT 337 (491)
Q Consensus 259 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~a~~p~~~~~~~~~~~~~~~~~~ 337 (491)
.|.+......+....+...+...++.+..+ +++.|.|+....+.++...+ ..+++++..-..++...+ .++.++..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 344555566666666666666666666553 89999999999999888766 678888888777765432 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHH
Q 011186 338 IVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCY 417 (491)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 417 (491)
...........+ ++.... .+...+.. ++. ...+........++..........+++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~-i~~~~~----~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSL-IFLLIL----LIASFFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHH-HHHHHH----HHHHHcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222 222222 22223333 321 122222222222567888888999999999999888888876
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 418 YIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 418 ~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
+....+...+.. ...+..+..++.. ++..+..++..+..+|
T Consensus 150 -~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555544444442 3334888888888 8888888777776665
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.12 E-value=0.0019 Score=58.48 Aligned_cols=160 Identities=10% Similarity=0.084 Sum_probs=111.6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011186 252 FSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYL-KNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNG 330 (491)
Q Consensus 252 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~ 330 (491)
....++++++-+|.++++....++-++.+.-+++- .+..+.+|+|+++..+.-++..+...+-+.....+. ++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 35788999999999999999999999999888763 333456999999999999999888888777666553 222
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHhHhHh-hhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcch
Q 011186 331 KGAGFATIVSVAQSTLIG-LILCVIIMILHDKV-ALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQAT 408 (491)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 408 (491)
++. +........+.+.. +...+..--+++.+ .+++.-|+++.+.+...+.++.+..+++++....++++.=.+++..
T Consensus 82 srr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 221 12111111111111 11222222244443 3455668899999999999999999999999999999886666666
Q ss_pred hHHHHHHHH
Q 011186 409 VAYINLGCY 417 (491)
Q Consensus 409 ~~~~~~~~~ 417 (491)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 666666553
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.00 E-value=0.0023 Score=58.35 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=106.4
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011186 278 ILILMTGYLKNATLAVDALSVCMSINGWQMMIP-LAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIM 356 (491)
Q Consensus 278 ~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~-~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (491)
....++++..+ +++.|.|+....+..+...+. .++.+...- ..++++++.++..+..........+...++..
T Consensus 6 ~~~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 6 LFLILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 899999999999888887663 444433322 23456666666666666554444444433322
Q ss_pred HhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 011186 357 ILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGV 436 (491)
Q Consensus 357 ~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~ 436 (491)
.... .+ ++++ ...++.+..+..++..+.......+++.+|.+.......... +....+...+.. ...+.
T Consensus 80 ~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred HHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhH
Confidence 2222 33 3332 345666777778888999999999999999999998888876 444333333332 23388
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 011186 437 GGIWGGMIFGGTFVQTVILAIITA 460 (491)
Q Consensus 437 ~g~~~a~~~~~~~~~~~~~~~~~~ 460 (491)
.+..++.. ++..+..+......+
T Consensus 149 ~~~~~~~~-~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFI-ISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhc
Confidence 88889888 888887776555444
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.76 E-value=0.035 Score=51.59 Aligned_cols=319 Identities=13% Similarity=0.068 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhHHHHHHhHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhH
Q 011186 85 NFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPL 164 (491)
Q Consensus 85 ~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (491)
...+..|+.-..++++|+..=+++.+++..-+.....+....+..+..... ...++.+. .|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHHHH
Confidence 455777888888899988877777777665554444444443333332111 11112111 111133344
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCccC
Q 011186 165 HFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTW 244 (491)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~ 244 (491)
....+..=+...++.+.+|.+.....-.++.++..++..++-. .+..|..++..++..+.......+..|.-...+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 4444555556778889999999999988998888888766654 5889999999999888887777777765111111
Q ss_pred CCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHHHHHHHHHH-----HH
Q 011186 245 SGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVD------ALSVCMSINGWQMMIPL-----AF 313 (491)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~i~~~~~~~~~-----~i 313 (491)
..++.- +..+--....+..+..+++..+|+++.=..+++.+..+ .|.+..-...+...|.. .+
T Consensus 218 i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 222211 11222223345556677777777765443332222222 23333333333333322 33
Q ss_pred HHHHHHHHHHhhc----C-------CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHH
Q 011186 314 LAATGVRVANELG----A-------GNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFL 382 (491)
Q Consensus 314 ~~a~~p~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~ 382 (491)
.+...+..-+.+. . ++.++.....++.+.-.+-+-...++.++++++.+..++.-++ ...+.+++
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHH
Confidence 3444444332221 1 2233344455555555666677788899999999998887643 24566666
Q ss_pred HHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011186 383 LAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIG 429 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 429 (491)
-.++.-+......+-.+..-..+-+..+..+..-. +.|..+.++..
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l 413 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHH
Confidence 66666666666666666666677777766666654 66766666654
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.04 E-value=49 Score=31.66 Aligned_cols=137 Identities=17% Similarity=0.114 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHH
Q 011186 307 MMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAIT 386 (491)
Q Consensus 307 ~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 386 (491)
.+++.+++....-.+++.+=++|.+++...+.-.+.+....+..++..+. +.++| +...... ..+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~--l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKI--LACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHH--HHHHH
Confidence 34566777777777888877788888877777766666555554443111 22233 2222332 23444
Q ss_pred HHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 011186 387 ILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461 (491)
Q Consensus 387 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 461 (491)
.+..+...+....+.+.+|.+...+.-.++. .+.+.++.++- +.+..|..++.. ++..+...+......|
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~-IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLD-IGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 5566777788889999999999888888875 77777777765 568899999999 8887776655554443
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=79.77 E-value=63 Score=31.54 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=42.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011186 329 NGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVL 396 (491)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 396 (491)
+.++.+++.+++.+++........+++....-|+...-.+.+ ...++.++.............
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~-----~~~~~~~~~~l~~lK~~~l~~ 151 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS-----FWEFLLLLLFLLALKWWNLLL 151 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999998888888888777444322 234444444444444444433
No 48
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=65.42 E-value=1.1e+02 Score=27.95 Aligned_cols=61 Identities=3% Similarity=-0.009 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHH-HHHHHHHHHHHHHHhHhHhhhh
Q 011186 304 GWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQ-STLIGLILCVIIMILHDKVALI 365 (491)
Q Consensus 304 ~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l 365 (491)
+....+...+++......-+...++|.++.++........ .+...++. .+...++.+.++-
T Consensus 107 ~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~-fla~~~G~~~v~~ 168 (265)
T TIGR00822 107 QVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPA-LIVALVSQSAVQA 168 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHH
Confidence 3344555666777777777788889999887654433322 22333333 3333344444433
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=52.46 E-value=79 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHH
Q 011186 309 IPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIG 348 (491)
Q Consensus 309 ~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (491)
+..-++-.....+.+.+.+||++++++.-+++.++..+-.
T Consensus 32 PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 32 PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 3444444555667778889999999999888887765433
No 50
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=49.26 E-value=2.6e+02 Score=27.21 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=5.1
Q ss_pred HHHHHHHHhHhHh
Q 011186 350 ILCVIIMILHDKV 362 (491)
Q Consensus 350 ~~~~~~~~~~~~i 362 (491)
|.++.+.+++-.+
T Consensus 62 Plai~LlLl~~Dl 74 (378)
T PF05684_consen 62 PLAIPLLLLSADL 74 (378)
T ss_pred HHHHHHHHHHccH
Confidence 3334444433333
No 51
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=47.67 E-value=1.4e+02 Score=24.20 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 011186 419 IIGLPLGFLIG 429 (491)
Q Consensus 419 ~~~i~l~~~l~ 429 (491)
.+.+|+..++.
T Consensus 95 ~iqlPl~vFL~ 105 (174)
T KOG4694|consen 95 CIQLPLMVFLR 105 (174)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 52
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.86 E-value=3e+02 Score=26.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=16.5
Q ss_pred HHHHHhcCHHHHHHHHHHHhcccCCCCC
Q 011186 456 AIITARCDWEKEAGIAKQRLQKWSNPNP 483 (491)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (491)
=+.+.|..|.++.+..++++++|..++|
T Consensus 208 D~~~qr~~~~k~lkMtKqEVKdE~K~sE 235 (363)
T COG1377 208 DYFYQRFQYIKKLKMTKQEVKDEYKQSE 235 (363)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhhcc
Confidence 3345555677766666666666655544
No 53
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=36.67 E-value=1.9e+02 Score=24.38 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=17.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011186 212 GVVGAALALDISWWVLCFGLYGYAAFG 238 (491)
Q Consensus 212 g~~g~a~a~~i~~~~~~~~~~~~~~~~ 238 (491)
++.|...++.++.++..++...|.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 334556777788777777766666543
No 54
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=35.06 E-value=4.6e+02 Score=25.99 Aligned_cols=73 Identities=11% Similarity=-0.078 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 011186 262 SVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV 341 (491)
Q Consensus 262 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
+.|..++.+.--++......+.....+++.+++ -+.-....|++.+....+++.+|+.++.+.+|...-+.
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 667777776666666666666666554444433 33456788999999999999999999999887776655
Q ss_pred HH
Q 011186 342 AQ 343 (491)
Q Consensus 342 ~~ 343 (491)
..
T Consensus 450 Af 451 (510)
T KOG2468|consen 450 AF 451 (510)
T ss_pred HH
Confidence 43
No 55
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.59 E-value=2.7e+02 Score=22.32 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 011186 118 RSWIVLFLFCFLLLPFYVFATPLLKLLGQPD-DVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLL 196 (491)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 196 (491)
........+.++.+........+++++|.+= ...+...-.+.....+.++..+...+...+.-.+-++.. .......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHHH
Confidence 3344444444444444556667778887652 223333333445566777776666665555554322222 2344566
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHH
Q 011186 197 VNVLTSWLFVYVLDFGVVGAALALDIS 223 (491)
Q Consensus 197 ~~i~l~~~li~~~~~g~~g~a~a~~i~ 223 (491)
+....++..++..+.=+.+..+.+...
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~~e 110 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTLSE 110 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcHHH
Confidence 777888777775554344444444333
No 56
>PRK10739 putative antibiotic transporter; Provisional
Probab=30.62 E-value=3.6e+02 Score=23.41 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHH
Q 011186 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFL 382 (491)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~ 382 (491)
.|.+-...++.+.++-|+..++.... ...+.+.+.++++.+.+.|+-+-+..+.+...+-.
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~----a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~ 81 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLI----ALLVMLVFLFAGEKILAFLNLRTETVSISGGIILF 81 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444445555666666666655444 44456688889999999998776656656554433
No 57
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.28 E-value=2.3e+02 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 011186 108 RYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQ 146 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (491)
+++...+.+..++...+++-.+.+++..+..|+.++++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 344444444444444444444444445566677666663
No 58
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.65 E-value=4.6e+02 Score=25.34 Aligned_cols=15 Identities=7% Similarity=-0.232 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 011186 340 SVAQSTLIGLILCVI 354 (491)
Q Consensus 340 ~~~~~~~~~~~~~~~ 354 (491)
..++.+-+.+|+.+.
T Consensus 33 ls~lv~~~~lP~liF 47 (385)
T PF03547_consen 33 LSKLVFNVFLPALIF 47 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444554433
No 59
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=25.70 E-value=4.6e+02 Score=26.38 Aligned_cols=35 Identities=9% Similarity=-0.114 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHH
Q 011186 49 RISSYTMNIITQAFAGHLGDVELAAISIANTVIVG 83 (491)
Q Consensus 49 ~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~ 83 (491)
-.+..+++-+|+..+.-.+++.-.++++......+
T Consensus 38 l~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl 72 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL 72 (493)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc
Confidence 34456677788888876555555566555555444
No 60
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=25.35 E-value=4.6e+02 Score=22.87 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHH
Q 011186 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFL 382 (491)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~ 382 (491)
.|......+..+.++-|+..++.. .....+...+.++++.+.+.|+-+-+..+.+...+-.
T Consensus 21 ip~f~~lt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~ 81 (203)
T PF01914_consen 21 IPIFLSLTKGMSPKERRRIARRAS----IIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILF 81 (203)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444444455555556555544 4445557788889999999997766656655555443
No 61
>PRK11111 hypothetical protein; Provisional
Probab=24.69 E-value=4.9e+02 Score=22.96 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=37.0
Q ss_pred HHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHH
Q 011186 319 VRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLL 383 (491)
Q Consensus 319 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 383 (491)
|..-...++.+.++-++..++.. .....+.+++.++++++.++|+=+-+..+.+...+-..
T Consensus 28 piflslt~~~s~~~r~~ia~~a~----l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ 88 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTAN----LSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVT 88 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33333344445555555555444 44455567888999999999987666566665554433
No 62
>PRK06298 type III secretion system protein; Validated
Probab=23.84 E-value=6.6e+02 Score=24.22 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011186 372 VLAEVDKLSFLLAITILLN 390 (491)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~ 390 (491)
..+.....+.+..++.+++
T Consensus 137 lvel~KsllK~~~~~~v~~ 155 (356)
T PRK06298 137 LIELLKSILKISGAALILY 155 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 63
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.15 E-value=6.8e+02 Score=24.11 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 011186 372 VLAEVDKLSFLLAITILLNSV 392 (491)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~ 392 (491)
..+.....+.+..++.+++.+
T Consensus 138 l~el~KsllK~~~~~~v~~~~ 158 (353)
T PRK09108 138 LIELVKMIVKAVVIAAVLWKG 158 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666655555444333
No 64
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.97 E-value=5.1e+02 Score=22.56 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHH
Q 011186 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLL 383 (491)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 383 (491)
.|......+..+.++-++..++.. .....+.+.+.++++.+.+.|+-+-+....+...+-..
T Consensus 24 ipvfl~lt~~~~~~~r~~ia~~~~----l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ 85 (201)
T TIGR00427 24 IPIFISLTEYYTAAERNKIAKKAN----ISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFT 85 (201)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344444455555555566655544 44445567888899999999987665566555554433
No 65
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.87 E-value=3e+02 Score=19.87 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=24.8
Q ss_pred HHHHHhHhccCccchHHHHHHHHHHHHHHHHHHHH
Q 011186 97 ETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLL 131 (491)
Q Consensus 97 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (491)
...+-..+.+||.+++++.-+++..++.+..++..
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566677789999999888888777655444433
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=22.36 E-value=6.5e+02 Score=23.57 Aligned_cols=13 Identities=0% Similarity=-0.550 Sum_probs=6.0
Q ss_pred hcCCcchhHHHHH
Q 011186 432 FKLGVGGIWGGMI 444 (491)
Q Consensus 432 ~~~g~~g~~~a~~ 444 (491)
...|.....+...
T Consensus 145 ~~~~~~~~~~~~~ 157 (379)
T TIGR00881 145 ELYSWHWVFIVPG 157 (379)
T ss_pred hcCCchhHHHHHH
Confidence 3445555444333
No 67
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.99 E-value=2.1e+02 Score=17.82 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 011186 440 WGGMIFGGTFVQTV 453 (491)
Q Consensus 440 ~~a~~~~~~~~~~~ 453 (491)
|.+.. ++.++...
T Consensus 9 W~sYg-~t~l~l~~ 21 (45)
T TIGR03141 9 WLAYG-ITALVLAG 21 (45)
T ss_pred HHHHH-HHHHHHHH
Confidence 44555 44444433
No 68
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.80 E-value=7.4e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=12.4
Q ss_pred HHhcCHHHHHHHHHHHhcccCCCCC
Q 011186 459 TARCDWEKEAGIAKQRLQKWSNPNP 483 (491)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (491)
+.|..|.++.+..++++++|..+.|
T Consensus 199 ~Qr~~~~k~lkMSkqEvKdE~Ke~E 223 (361)
T PRK08156 199 AEYFLHMKDMKMDKQEVKREYKEQE 223 (361)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhcc
Confidence 4444455555444555555555433
No 69
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.35 E-value=7.4e+02 Score=23.82 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011186 372 VLAEVDKLSFLLAITILLN 390 (491)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~ 390 (491)
..+.....+.+..++.+++
T Consensus 136 l~el~KsllK~~~i~~v~~ 154 (347)
T TIGR00328 136 LVELLKSLLKVFLVSFVAY 154 (347)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 70
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.02 E-value=3.2e+02 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhcCH
Q 011186 447 GTFVQTVILAIITARCDW 464 (491)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (491)
..++.++..+++++|++|
T Consensus 306 im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 306 LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 334445556677887777
No 71
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=2.8e+02 Score=18.76 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.0
Q ss_pred cCCCCCCc
Q 011186 478 WSNPNPDD 485 (491)
Q Consensus 478 ~~~~~~~~ 485 (491)
.+++.|+.
T Consensus 48 l~Dd~q~~ 55 (60)
T COG4736 48 LNDDAQDA 55 (60)
T ss_pred CCcchhhh
Confidence 33333333
No 72
>PRK10995 inner membrane protein; Provisional
Probab=20.93 E-value=5.9e+02 Score=22.52 Aligned_cols=59 Identities=10% Similarity=-0.020 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHH
Q 011186 318 GVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLS 380 (491)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 380 (491)
.|..-...+..+.++-++..++.. +....+.++..+.++.+.+.|.-+.+..+.+...+
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~----~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGil 83 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMAS----VYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLI 83 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444455555556655544 44455567888889999999987655555554443
No 73
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.60 E-value=6.9e+02 Score=23.23 Aligned_cols=23 Identities=4% Similarity=-0.298 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011186 257 EYTKLSVAAGVMLCLENWYYRIL 279 (491)
Q Consensus 257 ~l~~~~~p~~~~~~~~~~~~~~~ 279 (491)
-++|--+|..+..+.......+.
T Consensus 193 Ii~rhIlPn~~~~iiv~~~l~~~ 215 (289)
T COG1173 193 IIFRHILPNVLPPLIVLATLDIG 215 (289)
T ss_pred hhHHHhhhccHHHHHHHHHHHHH
Confidence 33444445544444444444443
No 74
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.13 E-value=3.2e+02 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhcCH
Q 011186 447 GTFVQTVILAIITARCDW 464 (491)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (491)
..++.+++.+++++|++|
T Consensus 300 ~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 300 VMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 334445557777888877
Done!