Query         011186
Match_columns 491
No_of_seqs    269 out of 2107
Neff          10.5
Searched_HMMs 29240
Date          Mon Mar 25 02:56:56 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011186hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3mkt_A Multi antimicrobial ext 100.0 1.2E-48 4.3E-53  390.8  36.2  430   29-462     5-446 (460)
  2 3mkt_A Multi antimicrobial ext  99.8 1.2E-19 4.2E-24  180.7  21.4  206   31-237   233-445 (460)
  3 1pw4_A Glycerol-3-phosphate tr  88.0      18 0.00062   34.2  39.1   22  432-454   408-429 (451)
  4 3o7q_A L-fucose-proton symport  86.6      22 0.00074   33.5  31.9   46   35-80     25-72  (438)
  5 4aps_A DI-OR tripeptide H+ sym  58.2 1.3E+02  0.0044   28.6  30.9    9  320-328   341-349 (491)
  6 2k1k_A Ephrin type-A receptor   23.2      78  0.0027   18.2   2.8   12  214-225    14-25  (38)
  7 4ev6_A Magnesium transport pro  22.9 1.2E+02   0.004   27.7   5.6   43  419-464   287-338 (339)
  8 2knc_B Integrin beta-3; transm  19.4 2.3E+02  0.0077   19.4   5.4    8  469-476    48-55  (79)
  9 2ks1_B Epidermal growth factor  15.4   2E+02   0.007   17.1   4.6    6  232-237    32-37  (44)
 10 2jwa_A Receptor tyrosine-prote  14.6 2.2E+02  0.0074   17.0   3.5    8  231-238    31-38  (44)

No 1  
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00  E-value=1.2e-48  Score=390.76  Aligned_cols=430  Identities=22%  Similarity=0.359  Sum_probs=394.7

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCc
Q 011186           29 SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKR  108 (491)
Q Consensus        29 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~  108 (491)
                      ...++..|++++.++|.+++++...+++.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3456789999999999999999999999999999999999999999999999877 677889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHH
Q 011186          109 YHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA  188 (491)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  188 (491)
                      +++.++.++.++.+...+++++.++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877777788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-h---CCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCcc---CCCCchhhhcchHHHHHH
Q 011186          189 WVSLVGLLVNVLTSWLFVYV-L---DFGVVGAALALDISWWVLCFGLYGYAAFGGCPLT---WSGFSTQAFSGLWEYTKL  261 (491)
Q Consensus       189 ~~~i~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~  261 (491)
                      ..++++.++|++++++++.. +   ++|+.|+++++.+++.+..++..++.++++...+   ++++...+++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999974 3   6899999999999999999888777776532211   122234456789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 011186          262 SVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV  341 (491)
Q Consensus       262 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~  341 (491)
                      +.|.+++++.+.+.+.+++.++++++  ++++++|+++.++.++..++..+++++..|.+++++|++|+++.++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999985  8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 011186          342 AQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG  421 (491)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  421 (491)
                      ++...++++.+++++++++++..+|.+|+++++.+..++++++++.++.+++.+..+.+++.||+|.+++.++.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHH----hc-CCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186          422 LPLGFLIGWV----FK-LGVGGIWGGMIFGGTFVQTVILAIITARC  462 (491)
Q Consensus       422 i~l~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  462 (491)
                      +|+++++...    ++ +|..|+|+++. +++.+..++..++++|.
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999943    34 99999999999 99999988777666654


No 2  
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84  E-value=1.2e-19  Score=180.67  Aligned_cols=206  Identities=14%  Similarity=0.096  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186           31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH  110 (491)
Q Consensus        31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~  110 (491)
                      .++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++..|.+++.+|++|++
T Consensus       233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~  311 (460)
T 3mkt_A          233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTK  311 (460)
T ss_dssp             TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            34568999999999999999999999999999999999999999999999998 67788999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186          111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW  189 (491)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (491)
                      +.++..+.+..+...++++..++ ..+.+++..++.+|++..+.+..+++++++..++..++....+++++.||++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  391 (460)
T 3mkt_A          312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH  391 (460)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            99999999999999999988876 78889999988888888889999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHh----hC-CCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011186          190 VSLVGL-LVNVLTSWLFVYV----LD-FGVVGAALALDISWWVLCFGLYGYAAF  237 (491)
Q Consensus       190 ~~i~~~-~~~i~l~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~  237 (491)
                      .++++. ++++++++++...    ++ +|+.|+++++.+++.+..++..+..+|
T Consensus       392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~  445 (460)
T 3mkt_A          392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW  445 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987 9999999999976    66 999999999999999888766554443


No 3  
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=88.00  E-value=18  Score=34.19  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=11.8

Q ss_pred             hcCCcchhHHHHHHHHHHHHHHH
Q 011186          432 FKLGVGGIWGGMIFGGTFVQTVI  454 (491)
Q Consensus       432 ~~~g~~g~~~a~~~~~~~~~~~~  454 (491)
                      ...|....++... +..++..++
T Consensus       408 ~~~g~~~~~~~~~-~~~~~~~~~  429 (451)
T 1pw4_A          408 DFFGWDGGFMVMI-GGSILAVIL  429 (451)
T ss_dssp             HSSCSHHHHHHHH-HHHHHHHHH
T ss_pred             HhcCcHHHHHHHH-HHHHHHHHH
Confidence            4567666666555 444444443


No 4  
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=86.58  E-value=22  Score=33.54  Aligned_cols=46  Identities=9%  Similarity=0.041  Sum_probs=23.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc--ChhHHHHHHHHHHH
Q 011186           35 SKKLWQIVGPAIFSRISSYTMNIITQAFAGHL--GDVELAAISIANTV   80 (491)
Q Consensus        35 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l--g~~~~~~~~~~~~~   80 (491)
                      .+.+.-...-..+..............+..++  ++.+.+.......+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~   72 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYF   72 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            33444444444445555455555555566666  45555544433333


No 5  
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=58.19  E-value=1.3e+02  Score=28.61  Aligned_cols=9  Identities=0%  Similarity=-0.171  Sum_probs=4.1

Q ss_pred             HHHHhhcCC
Q 011186          320 RVANELGAG  328 (491)
Q Consensus       320 ~~~~~~~~~  328 (491)
                      .+.+.++++
T Consensus       341 ~l~~r~~~r  349 (491)
T 4aps_A          341 WLWTAWKKN  349 (491)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHhcc
Confidence            344445443


No 6  
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.23  E-value=78  Score=18.20  Aligned_cols=12  Identities=17%  Similarity=0.050  Sum_probs=5.2

Q ss_pred             chhHHHHHHHHH
Q 011186          214 VGAALALDISWW  225 (491)
Q Consensus       214 ~g~a~a~~i~~~  225 (491)
                      .|..++.+++-.
T Consensus        14 AGiVvG~v~gv~   25 (38)
T 2k1k_A           14 VAVIFGLLLGAA   25 (38)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             eeeehHHHHHHH
Confidence            344444444433


No 7  
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.87  E-value=1.2e+02  Score=27.66  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHhcCCc---------chhHHHHHHHHHHHHHHHHHHHHHhcCH
Q 011186          419 IIGLPLGFLIGWVFKLGV---------GGIWGGMIFGGTFVQTVILAIITARCDW  464 (491)
Q Consensus       419 ~~~i~l~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~~  464 (491)
                      ++.+|+.++-..+ +++.         .|.|++..  ..++.+++.+++++|++|
T Consensus       287 ~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~--~m~~~~~~~~~~fkrk~W  338 (339)
T 4ev6_A          287 TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMA--LMVVIIMIFVYIFRRSGW  338 (339)
T ss_dssp             HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence            5667777766543 2221         23344333  345555667777888887


No 8  
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.44  E-value=2.3e+02  Score=19.40  Aligned_cols=8  Identities=13%  Similarity=0.169  Sum_probs=3.3

Q ss_pred             HHHHHHhc
Q 011186          469 GIAKQRLQ  476 (491)
Q Consensus       469 ~~~~~~~~  476 (491)
                      ++++++.+
T Consensus        48 EkE~~~~~   55 (79)
T 2knc_B           48 EEERARAK   55 (79)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            44444443


No 9  
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.38  E-value=2e+02  Score=17.10  Aligned_cols=6  Identities=0%  Similarity=-0.430  Sum_probs=2.3

Q ss_pred             HHHHHh
Q 011186          232 YGYAAF  237 (491)
Q Consensus       232 ~~~~~~  237 (491)
                      ++++++
T Consensus        32 ~~~~RR   37 (44)
T 2ks1_B           32 GLFMRR   37 (44)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            333333


No 10 
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.64  E-value=2.2e+02  Score=17.02  Aligned_cols=8  Identities=0%  Similarity=-0.492  Sum_probs=3.6

Q ss_pred             HHHHHHhc
Q 011186          231 LYGYAAFG  238 (491)
Q Consensus       231 ~~~~~~~~  238 (491)
                      ...+++|+
T Consensus        31 ~~~~~RRR   38 (44)
T 2jwa_A           31 FGILIKRR   38 (44)
T ss_dssp             HHHHHHHH
T ss_pred             HHhheehh
Confidence            34445444


Done!