Query 011186
Match_columns 491
No_of_seqs 269 out of 2107
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 02:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011186.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011186hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 37.5 1.2E+02 0.0084 25.8 18.5 25 210-234 406-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 27.0 1.7E+02 0.012 24.6 42.5 26 432-458 405-430 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 12.8 1.1E+02 0.0077 16.3 4.0 34 329-362 7-40 (41)
4 d1ijdb_ f.3.1.1 (B:) Light-har 5.9 2.3E+02 0.017 14.9 3.7 32 329-360 8-39 (40)
5 d1q90b_ f.21.1.2 (B:) Cytochro 5.0 6.1E+02 0.044 19.1 5.8 12 433-444 136-147 (212)
6 d2yvxa3 f.57.1.1 (A:276-448) M 4.0 6.8E+02 0.05 18.0 7.0 36 98-133 61-98 (173)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.7 3.7E+02 0.027 14.4 4.5 30 325-354 4-33 (42)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.6 4.3E+02 0.031 15.2 3.3 8 420-427 15-22 (64)
9 d1j1va_ a.4.12.2 (A:) Chromoso 2.5 4.7E+02 0.034 16.5 2.5 35 305-339 36-70 (94)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.3 5.8E+02 0.042 13.8 2.6 22 445-466 13-34 (46)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=37.54 E-value=1.2e+02 Score=25.84 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=11.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHH
Q 011186 210 DFGVVGAALALDISWWVLCFGLYGY 234 (491)
Q Consensus 210 ~~g~~g~a~a~~i~~~~~~~~~~~~ 234 (491)
..|..+..+......++..++....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3565555554444444444444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=1.7e+02 Score=24.59 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=14.8
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHHHHH
Q 011186 432 FKLGVGGIWGGMIFGGTFVQTVILAII 458 (491)
Q Consensus 432 ~~~g~~g~~~a~~~~~~~~~~~~~~~~ 458 (491)
..+|..+..+... ....+..++....
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILLIVV 430 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHHHHH
Confidence 5677777666665 5555555444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=12.81 E-value=1.1e+02 Score=16.31 Aligned_cols=34 Identities=6% Similarity=-0.093 Sum_probs=26.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhHh
Q 011186 329 NGKGAGFATIVSVAQSTLIGLILCVIIMILHDKV 362 (491)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 362 (491)
+-|+..+....+.+....+.+..=++.+...||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888888988888888777777766654
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.87 E-value=2.3e+02 Score=14.89 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=22.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 011186 329 NGKGAGFATIVSVAQSTLIGLILCVIIMILHD 360 (491)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (491)
+-++..+....+.+....+.+..=++.+...|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45677788888888887777766665555443
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.05 E-value=6.1e+02 Score=19.08 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.5
Q ss_pred cCCcchhHHHHH
Q 011186 433 KLGVGGIWGGMI 444 (491)
Q Consensus 433 ~~g~~g~~~a~~ 444 (491)
.+|-.+.|.+..
T Consensus 136 pw~q~sywa~~V 147 (212)
T d1q90b_ 136 PWDQVGYWAVKI 147 (212)
T ss_dssp TCBHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 333333333333
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.97 E-value=6.8e+02 Score=18.02 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHhHhccC--ccchHHHHHHHHHHHHHHHHHHHHHH
Q 011186 98 TLCGQAFGAK--RYHMLGIYMQRSWIVLFLFCFLLLPF 133 (491)
Q Consensus 98 ~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (491)
..+-|..+.+ +.++..+.+.+=+..++..++.+.++
T Consensus 61 ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 61 TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544433 45566666766666666666555543
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.66 E-value=3.7e+02 Score=14.36 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=14.6
Q ss_pred hcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 011186 325 LGAGNGKGAGFATIVSVAQSTLIGLILCVI 354 (491)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
.|+-|...-++.+.-.+++..-..+.+.++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~ 33 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAA 33 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443333
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.65 E-value=4.3e+02 Score=15.18 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 011186 420 IGLPLGFL 427 (491)
Q Consensus 420 ~~i~l~~~ 427 (491)
+.+|++++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=4.7e+02 Score=16.50 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Q 011186 305 WQMMIPLAFLAATGVRVANELGAGNGKGAGFATIV 339 (491)
Q Consensus 305 ~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~ 339 (491)
+.+.+..-......+.+++.+|.+|+..+-..+++
T Consensus 36 va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 36 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 33444555666778888999988888777666665
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.29 E-value=5.8e+02 Score=13.83 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCHHH
Q 011186 445 FGGTFVQTVILAIITARCDWEK 466 (491)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
++..+..+....++.+|+.|..
T Consensus 13 v~~~l~~l~~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Done!