BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011187
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 365 ASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVL 424
S G + + G + ++V + +D GN +C DC P+WAS+NLGV
Sbjct: 13 GSAATLGSGGMARGREPGGVGHVVAQVQSVD------GNAQCCDCREPAPEWASINLGVT 66
Query: 425 ICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWE 474
+CIQCSG+HR+LGVH SKVRSLTLD WEP ++ L LGN+ N ++E
Sbjct: 67 LCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYE 114
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 365 ASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVL 424
S G + + G + ++V + +D GN +C DC P+WAS+NLGV
Sbjct: 13 GSAATLGSGGMARGREPGGVGHVVAQVQSVD------GNAQCCDCREPAPEWASINLGVT 66
Query: 425 ICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWE 474
+CIQCSG+HR+LGVH SKVRSLTLD WEP ++ L LGN+ N ++E
Sbjct: 67 LCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYE 114
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 365 ASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVL 424
S G + + G + ++V + +D GN +C DC P+WAS+NLGV
Sbjct: 13 GSAATLGSGGMARGREPGGVGHVVAQVQSVD------GNAQCCDCREPAPEWASINLGVT 66
Query: 425 ICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWE 474
+CIQCSG+HR+LGVH SKVRSLTLD WEP ++ L LGN+ N ++E
Sbjct: 67 LCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYE 114
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLF 461
GN++C DCGA++P W S NLGVL CIQCSGVHR LGV S+++SLTLD + PS L L
Sbjct: 41 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 98
Query: 462 QSLGNIYANSVWE-ELLRIGNNSLTDERHMG 491
++GN N V E +L G + E MG
Sbjct: 99 LNMGNTSFNEVMEAQLPSHGGPKPSAESDMG 129
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLF 461
GN++C DCGA++P W S NLGVL CIQCSGVHR LGV S+++SLTLD + PS L L
Sbjct: 22 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 79
Query: 462 QSLGNIYANSVWE-ELLRIGNNSLTDERHMG 491
++GN N V E +L G + E MG
Sbjct: 80 LNMGNTSFNEVMEAQLPSHGGPKPSAESDMG 110
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 394 IDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVW 453
I ++R+ GN+ C DCGA +P W S NLG+L CI+CSG+HR LGVH S+++SLTLD V
Sbjct: 8 ISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VL 65
Query: 454 EPSVLNLFQSLGNIYANSVWEELL 477
S L L +++GN N + E L
Sbjct: 66 GTSELLLAKNIGNAGFNEIMECCL 89
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQ 462
N CADC + P WAS N+GV ICI+C+G+HRNLGVHIS+V+S+ LD W + Q
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQ 84
Query: 463 SLGNIYANSVWEELL 477
+GN AN ++E L
Sbjct: 85 EMGNGKANRLYEAYL 99
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 394 IDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVW 453
++LL+R GN +CADCGA +PDWAS LGV IC+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 28 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 83
Query: 454 EPSVLNLFQSLGNIYANSVWE 474
E + + S GN A + +E
Sbjct: 84 EEAQVEFMASHGNDAARARFE 104
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
+K+GY+ K +++R+F +D R L+Y+
Sbjct: 272 LKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYF 303
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 394 IDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVW 453
++LL+R GN +CADCGA +PDWAS LGV IC+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 26 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 81
Query: 454 EPSVLNLFQSLGNIYANSVWE 474
E + + S GN A + +E
Sbjct: 82 EEAQVEFMASHGNDAARARFE 102
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
+K+GY+ K +++R+F +D R L+Y+
Sbjct: 270 LKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYF 301
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 397 LRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPS 456
L R N CADC A P WAS N+GV ICI+C+G+HRNLGVHIS+V+S+ LD W
Sbjct: 23 LLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAE 80
Query: 457 VLNLFQSLGNIYANSVWEELL 477
+ Q +GN A ++E L
Sbjct: 81 QIQCMQDMGNTKARLLYEANL 101
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%)
Query: 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDV 450
NNKC DCG S PDW S+N G+ +CI CSGVHR+LGVHIS VRS+ +D+
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI 69
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 397 LRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPS 456
LR V N C DCGA P WAS+ GV +CI CSGVHR+LGVH+S +RS LD W
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWF 89
Query: 457 VLNLFQSLGNIYANSVWEE 475
L Q GN A + + +
Sbjct: 90 QLRCMQVGGNANATAFFRQ 108
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 397 LRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPS 456
LR V N C DCGA P WAS+ GV +CI CSG HR+LGVH+S +RS LD W
Sbjct: 23 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWF 81
Query: 457 VLNLFQSLGNIYANSVWEE 475
L Q GN A+S + +
Sbjct: 82 QLRCMQVGGNASASSFFHQ 100
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQ 462
NN C +CGA P W S+ G+ IC++CSG HR LGVH+S VRS+T+D W+ L +
Sbjct: 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 94
Query: 463 SLGN 466
+ GN
Sbjct: 95 AGGN 98
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQ 462
NN C +CGA P W S+ G+ IC++CSG HR LGVH+S VRS+T+D W+ L +
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 95
Query: 463 SLGN 466
+ GN
Sbjct: 96 AGGN 99
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 110/294 (37%), Gaps = 73/294 (24%)
Query: 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94
V + ED++ +R Q + AL+ ++ KK+ LLE + G M A + FFK G E L
Sbjct: 159 VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL 218
Query: 95 H-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNV 153
+ Q+E F+ + Q R D + ++ Q ++D + + L P D
Sbjct: 219 NEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDL---------EVASDPLYVPDPDPT 269
Query: 154 KPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYY 211
K FP N N T K GYL+ R+ + + W R+F+ L+
Sbjct: 270 K-FPVNRN---------------LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQA 313
Query: 212 RKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIK 271
R + A G I D SV
Sbjct: 314 R----GDVAGGLAMDI--------------------------DNCSVMA----------- 332
Query: 272 PDADQSDLRFCFRIIS--PTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPE 323
D D R+CF+I S K LQAE+ D +WI IN + + + PE
Sbjct: 333 --VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPE 384
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 396 LLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEP 455
++R N C DC + P W SL+ V IC+ CS HR +GVHIS VRS LD + P
Sbjct: 29 IVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTP 86
Query: 456 SVLNLFQSLGNIYANSVWEELLRIGNNSLTDE 487
L GN A + ++++L + + T E
Sbjct: 87 IQLVRMDIGGNGRARNYFKQVLGVNFSPKTKE 118
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 107/294 (36%), Gaps = 73/294 (24%)
Query: 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94
V + ED++ +R Q + AL+ ++ KK+ LLE + G A + FFK G E L
Sbjct: 161 VKYEVTEDVYTSRKKQHQTXXHYFCALNTLQYKKKIALLEPLLGYXQAQISFFKXGSENL 220
Query: 95 H-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNV 153
+ Q+E F+ + Q R D + + Q ++D + + L P D
Sbjct: 221 NEQLEEFLANIGTSVQNVRREXDSDIETXQQTIEDL---------EVASDPLYVPDPDPT 271
Query: 154 KPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYY 211
K FP N N T K GYL+ R+ + + W R+F+
Sbjct: 272 K-FPVNRN---------------LTRKAGYLNARNKTGLVSSTWDRQFYF---------- 305
Query: 212 RKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIK 271
T G L GG +A N +
Sbjct: 306 -----------------------TQGGNLXSQARGDVAGG------LAXDIDNCSVXAV- 335
Query: 272 PDADQSDLRFCFRIIS--PTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPE 323
D D R+CF+I S K LQAE+ D +WI IN + + + PE
Sbjct: 336 ---DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPE 386
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 102/283 (36%), Gaps = 73/283 (25%)
Query: 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94
V + ED++ +R Q + AL+ ++ KK+ LLE + G A + FFK G E L
Sbjct: 179 VKYEVTEDVYTSRKKQHQTXXHYFCALNTLQYKKKIALLEPLLGYXQAQISFFKXGSENL 238
Query: 95 H-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNV 153
+ Q+E F+ + Q R D + + Q ++D + + L P D
Sbjct: 239 NEQLEEFLANIGTSVQNVRREXDSDIETXQQTIEDL---------EVASDPLYVPDPDPT 289
Query: 154 KPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYY 211
FP N N T K GYL+ R+ + + W R+F+
Sbjct: 290 D-FPVNRN---------------LTRKAGYLNARNKTGLVSSTWDRQFYF---------- 323
Query: 212 RKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIK 271
T G L GG +A N +
Sbjct: 324 -----------------------TQGGNLXSQARGDVAGG------LAXDIDNCSVXAV- 353
Query: 272 PDADQSDLRFCFRIIS--PTKVYTLQAENTLDQMDWIEKINGV 312
D D R+CF+I S K LQAE+ D +WI IN +
Sbjct: 354 ---DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 393
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 389 KNEKPIDLLRRVYG---NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRS 445
+ EK + +LR + G N KC DC P + ++ +G +C CSG R L +V+S
Sbjct: 8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKS 66
Query: 446 LTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTDER 488
+++ + + Q GN +W L ++++ D R
Sbjct: 67 ISMT--TFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFR 107
>pdb|2Z0N|A Chain A, Crystal Structure Of Appl1-Bar Domain
Length = 280
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94
V + ED++ +R Q + AL+ ++ KK+ LLE + G A + FFK G E L
Sbjct: 164 VKYEVTEDVYTSRKKQHQTXXHYFCALNTLQYKKKIALLEPLLGYXQAQISFFKXGSENL 223
Query: 95 H-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNV 153
+ Q+E F+ + Q R D + + Q ++D + + L P D
Sbjct: 224 NEQLEEFLANIGTSVQNVRREXDSDIETXQQTIEDL---------EVASDPLYVPDPDPT 274
Query: 154 KPFPRN 159
K FP N
Sbjct: 275 K-FPVN 279
>pdb|2Q12|A Chain A, Crystal Structure Of Bar Domain Of Appl1
Length = 265
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94
V + ED++ +R Q + AL+ ++ KK+ LLE + G A + FFK G E L
Sbjct: 159 VKYEVTEDVYTSRKKQHQTXXHYFCALNTLQYKKKIALLEPLLGYXQAQISFFKXGSENL 218
Query: 95 H-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQD 128
+ Q+E F+ + Q R D + + Q ++D
Sbjct: 219 NEQLEEFLANIGTSVQNVRREXDSDIETXQQTIED 253
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 394 IDLLRRVYG---NNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDV 450
+ +LR + G N KC DC P + ++ +G +C CSG R L +V+S+++
Sbjct: 8 LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISM-- 64
Query: 451 KVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTDER 488
+ + Q GN +W L ++++ D R
Sbjct: 65 TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFR 102
>pdb|1V5P|A Chain A, Solution Structure Of The N-Terminal Pleckstrin Homology
Domain Of Tapp2 From Mouse
Length = 126
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 35/131 (26%)
Query: 182 GYLSKRSSNLRADWKRRFFVLDSRG--LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGL 239
G+L + + RR+F+LD++ LL+Y P + AG+ S+Q + S+
Sbjct: 19 GFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISK----- 73
Query: 240 LSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENT 299
V++ T KP FCF I + ++ Y LQA +
Sbjct: 74 -----------------------VSIATPKQKPKTP-----FCFVINALSQRYFLQANDQ 105
Query: 300 LDQMDWIEKIN 310
D DW+E +N
Sbjct: 106 KDLKDWVEALN 116
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/321 (20%), Positives = 118/321 (36%), Gaps = 82/321 (25%)
Query: 16 FVLQAREKFLSLRKSTRM-------DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKK 68
F L + E LS+ K +R+ V + +++ AR + AL+ ++ +K
Sbjct: 156 FGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQYRK 215
Query: 69 RFELLEAVGGTMDAHLRFFKQGYELLHQ-MEPFINQVLAYAQQSRECSDYEQASLHQRMQ 127
+ ++E + G + FFK+G E+ + M+ F++ V Q + + E + Q
Sbjct: 216 QMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQ 275
Query: 128 DYLKQIDRESRQCLNGSLGSPSGDNVKP-FPRNSNKLIEAAMQSAVKGKVQTIKQGYLSK 186
+ L ++ S+ +P D P RN LI+ A GYL+
Sbjct: 276 ELLS---------VDESVYTPDSDVAAPQINRN---LIQKA--------------GYLNL 309
Query: 187 RSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWL 244
R+ + W+R +F L+ R + AG
Sbjct: 310 RNKTGLVTTTWERLYFFTQGGNLMCQPR-----GAVAG---------------------- 342
Query: 245 SSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT--KVYTLQAENTLDQ 302
G + D + + V D D R+CF+I +P LQAE+ +
Sbjct: 343 -----GLIQDLDNCSVMAV-----------DCEDRRYCFQITTPNGKSGIILQAESRKEN 386
Query: 303 MDWIEKINGVIASLLSFQTPE 323
+WI IN + + PE
Sbjct: 387 EEWICAINNISRQIYLTDNPE 407
>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGY|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
pdb|3GGZ|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|B Chain B, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|C Chain C, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
pdb|3GGZ|D Chain D, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain
In Complex With Did2 Mim Motif
Length = 193
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 301 DQMDW---IEKINGVIASLLSFQTPERVNVKHCLSSGPKESFDRCFIRESGLLVDSPY 355
D M W +E +NGVIA PE++ +K C S PKE +++E D PY
Sbjct: 130 DLMAWKINVEFVNGVIAD--HIDVPEKI-IKKCSPSVPKEELVDLYLKEIAKTYDVPY 184
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 179 IKQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYY 211
IKQGYL K+S + ++W++R+ V+ SRGL YYY
Sbjct: 4 IKQGYLEKKSKDHSFFGSEWQKRWCVV-SRGLFYYY 38
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 263 VNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWI 306
+NLLT +KP+A+ + F +IS + Y QAE+ D + WI
Sbjct: 53 LNLLTCQVKPNAED---KKSFDLISHNRTYHFQAEDEQDYVAWI 93
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 170 SAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
S G K G+L K++S+ W +R+FVL R L YY
Sbjct: 3 SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYY 43
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 42/149 (28%)
Query: 179 IKQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSET 235
IK GYL KR + L +W++R+ L S+ + YYY GS Q+
Sbjct: 18 IKAGYLEKRRKDHSFLGFEWQKRWCAL-SKTVFYYY----------GSDKDKQQKG---- 62
Query: 236 SQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK-VYTL 294
E ++ + V + +T++ D + CF I +P K +Y
Sbjct: 63 -------------------EFAIDGYDVRM-NNTLRKDGKKD---CCFEICAPDKRIYQF 99
Query: 295 QAENTLDQMDWIEKINGVIASLLSFQTPE 323
A + D +W++++ ++ L S PE
Sbjct: 100 TAASPKDAEEWVQQLKFILQDLGSDVIPE 128
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 174 GKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
G IK G+L K+ S ++ +W++R+FVL ++ L YY
Sbjct: 4 GSSGPIKMGWLKKQRSIVK-NWQQRYFVLRAQQLYYY 39
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 173 KGKVQTIKQGYLSKR---SSNL-RADWKRRFFVLDSRGLLYY 210
+ K + +KQG+L SS L R +WK+R+FVL L+Y+
Sbjct: 53 RSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYF 94
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
K G+L K++S+ W +R+FVL R L YY
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYY 54
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 181 QGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
+G+L K+ S+ WKRR+FVL L YY
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHCLFYY 43
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRK 213
+V IK+G+L KR ++ W+ R+F+L S G Y++
Sbjct: 3 EVSVIKEGWLHKRGEYIKT-WRPRYFLLKSDGSFIGYKE 40
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
IK GY K+ + ++ +WKRR+F LD + Y+
Sbjct: 14 VIKAGYCVKQGAVMK-NWKRRYFQLDENTIGYF 45
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
+++G+L K+ S WK+R+FVL L YY
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYY 53
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 149 SGDNVKPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSNLRADWKRRF 199
+G VKPF + IEA ++ K+ + QG+ ++++ +W R+
Sbjct: 305 AGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRY 355
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 149 SGDNVKPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSNLRADWKRRF 199
+G VKPF + IEA ++ K+ + QG+ ++++ +W R+
Sbjct: 306 AGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRY 356
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 179 IKQGYLSKRSSNLRADWK-RRFFVLDSRGLLYYY 211
+KQGYL+K+ R +WK RRF + L+YY
Sbjct: 19 VKQGYLAKQGHK-RKNWKVRRFVLRKDPAFLHYY 51
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 182 GYLSKRSSNLRADWKRRFFVLDSR-GLLYYY 211
GYL K + NL W+ RFFVL++ GLL Y+
Sbjct: 12 GYLMKYT-NLVTGWQYRFFVLNNEAGLLEYF 41
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 174 GKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYY 210
G +KQGY+ K+ + R +W R+FVL + YY
Sbjct: 4 GSSGVLKQGYMMKKG-HRRKNWTERWFVLKPNIISYY 39
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 353 SPYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGAS 412
+P D T + H+ T + + ++ DLE D+L+ YG KC + G
Sbjct: 39 NPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELE-------DVLKAGYGGVKCVESGGP 91
Query: 413 EPDWASLNLGVLICI 427
EP GV+ I
Sbjct: 92 EPGVGCAGRGVITAI 106
>pdb|2ZUO|A Chain A, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|B Chain B, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|C Chain C, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|D Chain D, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|E Chain E, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|F Chain F, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|G Chain G, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|H Chain H, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|I Chain I, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|J Chain J, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|K Chain K, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|L Chain L, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|M Chain M, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|N Chain N, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|O Chain O, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|P Chain P, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Q Chain Q, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|R Chain R, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|S Chain S, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|T Chain T, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|U Chain U, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|V Chain V, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|W Chain W, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|X Chain X, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Y Chain Y, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Z Chain Z, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|AA Chain a, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|BB Chain b, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|CC Chain c, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|DD Chain d, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|EE Chain e, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|FF Chain f, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|GG Chain g, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|HH Chain h, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|II Chain i, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|JJ Chain j, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|KK Chain k, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|LL Chain l, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|MM Chain m, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
Length = 861
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 10 FNGDGNFVLQAREKFLSLRKSTRMD---VAVVIEEDLHNARTSFEQARFNLVGALSNVEA 66
G+G+ VLQA+ K +L T + V V E +L AR E + L+NVEA
Sbjct: 735 IEGEGS-VLQAKLKAQALAIETEAELERVKKVREMELIYARAQLE-LEVSKAQQLANVEA 792
Query: 67 KKRFELLEAVG-GTM 80
KK E+ EA+G GT+
Sbjct: 793 KKFKEMTEALGPGTI 807
>pdb|2QZV|A Chain A, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
pdb|2QZV|B Chain B, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
Length = 873
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 10 FNGDGNFVLQAREKFLSLRKSTRMD---VAVVIEEDLHNARTSFEQARFNLVGALSNVEA 66
G+G+ VLQA+ K +L T + V V E +L AR E + L+NVEA
Sbjct: 747 IEGEGS-VLQAKLKAQALAIETEAELERVKKVREMELIYARAQLE-LEVSKAQQLANVEA 804
Query: 67 KKRFELLEAVG-GTM 80
KK E+ EA+G GT+
Sbjct: 805 KKFKEMTEALGPGTI 819
>pdb|1AVC|A Chain A, Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 47 RTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQM 97
RT +E++ ++++ ++ E KK LL+ GG DA +FF + ++ +QM
Sbjct: 294 RTKYEKSLYSMIKNDTSGEYKK--TLLKLCGGDDDAAGQFFPEAAQVAYQM 342
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 174 GKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYY 211
G + +K G+L ++S+ L+ WK+ +F L S G L YY
Sbjct: 1 GSMAFVKSGWLLRQSTILKR-WKKNWFDLWSDGHLIYY 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,318,167
Number of Sequences: 62578
Number of extensions: 570127
Number of successful extensions: 1372
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 67
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)