Query 011187
Match_columns 491
No_of_seqs 464 out of 2253
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 1.5E-60 3.3E-65 524.5 23.3 377 7-481 126-502 (785)
2 KOG0705 GTPase-activating prot 100.0 8.9E-36 1.9E-40 305.2 11.7 259 164-486 288-594 (749)
3 KOG1451 Oligophrenin-1 and rel 100.0 1.7E-33 3.7E-38 288.6 20.7 233 7-312 131-366 (812)
4 KOG0703 Predicted GTPase-activ 100.0 4.1E-33 8.8E-38 270.0 6.8 94 389-484 11-104 (287)
5 PF01412 ArfGap: Putative GTPa 100.0 2.7E-31 5.8E-36 230.7 5.4 92 392-485 2-93 (116)
6 smart00105 ArfGap Putative GTP 100.0 3.5E-30 7.6E-35 222.2 6.6 84 401-486 1-84 (112)
7 COG5347 GTPase-activating prot 100.0 4.4E-30 9.5E-35 256.3 7.1 89 391-481 8-96 (319)
8 PLN03119 putative ADP-ribosyla 99.9 1E-26 2.2E-31 239.9 7.3 98 385-487 5-102 (648)
9 KOG0706 Predicted GTPase-activ 99.9 8.9E-27 1.9E-31 234.9 6.0 85 391-477 11-95 (454)
10 PLN03114 ADP-ribosylation fact 99.9 1.6E-26 3.4E-31 227.5 7.2 84 392-477 11-94 (395)
11 PLN03131 hypothetical protein; 99.9 1.6E-26 3.5E-31 240.1 7.2 99 384-487 4-102 (705)
12 KOG1117 Rho- and Arf-GTPase ac 99.9 1.9E-26 4.2E-31 244.9 7.4 198 171-487 185-382 (1186)
13 KOG0704 ADP-ribosylation facto 99.9 1.4E-26 3E-31 226.2 5.2 84 392-477 8-91 (386)
14 cd07601 BAR_APPL The Bin/Amphi 99.9 3.2E-23 6.9E-28 196.7 13.0 104 6-109 110-215 (215)
15 cd07631 BAR_APPL1 The Bin/Amph 99.9 6.3E-23 1.4E-27 191.6 12.8 103 7-109 111-215 (215)
16 cd07602 BAR_RhoGAP_OPHN1-like 99.9 3.3E-23 7.1E-28 195.1 11.0 95 7-101 113-207 (207)
17 cd07603 BAR_ACAPs The Bin/Amph 99.9 3E-23 6.4E-28 196.3 10.8 94 7-101 107-200 (200)
18 cd07637 BAR_ACAP3 The Bin/Amph 99.9 1.2E-22 2.5E-27 191.8 10.9 94 7-101 107-200 (200)
19 cd07636 BAR_GRAF The Bin/Amphi 99.9 3.2E-22 6.8E-27 188.0 11.0 95 7-101 113-207 (207)
20 cd07635 BAR_GRAF2 The Bin/Amph 99.9 3.8E-22 8.2E-27 187.5 11.4 95 7-101 113-207 (207)
21 cd07634 BAR_GAP10-like The Bin 99.9 3.5E-22 7.6E-27 187.4 10.8 95 7-101 113-207 (207)
22 cd07606 BAR_SFC_plant The Bin/ 99.9 6.9E-22 1.5E-26 186.6 10.7 94 7-100 109-202 (202)
23 cd07633 BAR_OPHN1 The Bin/Amph 99.9 1.1E-21 2.5E-26 181.8 10.9 95 7-101 113-207 (207)
24 cd07632 BAR_APPL2 The Bin/Amph 99.9 2.2E-21 4.8E-26 179.7 12.4 102 7-108 111-214 (215)
25 cd07638 BAR_ACAP2 The Bin/Amph 99.9 2.2E-21 4.7E-26 182.2 10.8 94 7-101 107-200 (200)
26 cd07639 BAR_ACAP1 The Bin/Amph 99.8 4.5E-21 9.8E-26 179.9 10.5 94 7-101 107-200 (200)
27 cd01233 Unc104 Unc-104 pleckst 99.8 3.8E-19 8.2E-24 150.6 12.0 95 178-314 2-99 (100)
28 cd01251 PH_centaurin_alpha Cen 99.8 3.6E-19 7.8E-24 151.5 11.4 94 180-314 1-101 (103)
29 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 1.9E-18 4.2E-23 144.9 11.2 90 181-312 2-93 (95)
30 cd01264 PH_melted Melted pleck 99.8 3.1E-18 6.7E-23 143.9 10.4 93 180-312 2-100 (101)
31 cd07641 BAR_ASAP1 The Bin/Amph 99.7 6.6E-18 1.4E-22 157.2 11.0 99 6-104 109-215 (215)
32 cd07604 BAR_ASAPs The Bin/Amph 99.7 7E-18 1.5E-22 161.1 11.4 99 6-104 109-215 (215)
33 cd01236 PH_outspread Outspread 99.7 9.7E-18 2.1E-22 142.1 10.8 92 180-310 1-101 (104)
34 cd07640 BAR_ASAP3 The Bin/Amph 99.7 1.4E-17 3.1E-22 152.8 11.3 99 6-104 109-213 (213)
35 cd01260 PH_CNK Connector enhan 99.7 2.2E-17 4.9E-22 138.5 10.9 91 180-312 2-96 (96)
36 cd01238 PH_Tec Tec pleckstrin 99.7 2.6E-17 5.6E-22 140.8 10.5 94 179-311 1-105 (106)
37 cd01247 PH_GPBP Goodpasture an 99.7 5.5E-17 1.2E-21 134.8 11.6 88 181-311 2-90 (91)
38 cd01235 PH_SETbf Set binding f 99.7 8.7E-17 1.9E-21 136.0 11.5 92 181-313 2-101 (101)
39 cd01250 PH_centaurin Centaurin 99.7 6.9E-17 1.5E-21 134.2 10.7 93 180-311 1-93 (94)
40 cd01257 PH_IRS Insulin recepto 99.7 1.4E-16 3E-21 134.5 11.8 94 178-311 2-100 (101)
41 cd01252 PH_cytohesin Cytohesin 99.7 2.4E-16 5.2E-21 138.9 12.5 92 180-314 2-114 (125)
42 KOG0818 GTPase-activating prot 99.7 7.5E-18 1.6E-22 171.3 1.9 86 401-488 6-91 (669)
43 cd07642 BAR_ASAP2 The Bin/Amph 99.7 2.6E-16 5.6E-21 147.5 11.3 99 6-104 109-215 (215)
44 cd01245 PH_RasGAP_CG5898 RAS G 99.7 2E-16 4.3E-21 132.5 8.8 90 181-311 2-97 (98)
45 cd01266 PH_Gab Gab (Grb2-assoc 99.7 5.5E-16 1.2E-20 133.1 11.7 92 181-312 2-107 (108)
46 cd01246 PH_oxysterol_bp Oxyste 99.6 1.7E-15 3.8E-20 124.9 11.1 90 180-312 1-91 (91)
47 cd01249 PH_oligophrenin Oligop 99.6 7E-16 1.5E-20 129.0 8.3 94 180-311 1-103 (104)
48 cd01241 PH_Akt Akt pleckstrin 99.6 4.8E-15 1E-19 125.9 11.0 95 178-313 1-102 (102)
49 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 4.8E-15 1E-19 124.5 10.4 90 182-311 5-97 (98)
50 PF00169 PH: PH domain; Inter 99.6 3.3E-14 7.2E-19 118.7 13.2 97 178-313 1-103 (104)
51 cd07609 BAR_SIP3_fungi The Bin 99.6 9.7E-15 2.1E-19 139.2 9.1 100 7-106 109-209 (214)
52 cd01219 PH_FGD FGD (faciogenit 99.5 7.7E-14 1.7E-18 118.3 12.4 99 178-314 2-100 (101)
53 PF15413 PH_11: Pleckstrin hom 99.5 9.4E-14 2E-18 120.0 11.6 108 180-312 1-112 (112)
54 PF15409 PH_8: Pleckstrin homo 99.5 9.7E-14 2.1E-18 113.6 10.6 87 182-312 1-88 (89)
55 KOG0930 Guanine nucleotide exc 99.5 5.3E-14 1.2E-18 134.6 9.2 96 177-314 259-376 (395)
56 cd01220 PH_CDEP Chondrocyte-de 99.5 9.6E-13 2.1E-17 111.0 12.8 97 178-314 2-98 (99)
57 cd01253 PH_beta_spectrin Beta- 99.4 1.7E-12 3.6E-17 110.5 10.3 94 181-311 2-103 (104)
58 cd01263 PH_anillin Anillin Ple 99.4 2.7E-12 5.9E-17 111.8 9.7 95 180-312 3-122 (122)
59 cd01237 Unc112 Unc-112 pleckst 99.3 5.6E-12 1.2E-16 106.0 9.9 82 192-312 17-102 (106)
60 cd01254 PH_PLD Phospholipase D 99.3 8.1E-12 1.7E-16 109.4 10.8 36 277-312 86-121 (121)
61 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 1.1E-11 2.5E-16 107.3 10.8 102 180-315 2-113 (117)
62 smart00233 PH Pleckstrin homol 99.3 4.9E-11 1.1E-15 97.9 12.9 97 179-313 2-101 (102)
63 cd00821 PH Pleckstrin homology 99.2 1.8E-10 3.9E-15 93.6 9.1 94 180-311 1-95 (96)
64 cd01218 PH_phafin2 Phafin2 Pl 99.1 1.8E-09 3.9E-14 91.7 12.6 99 178-318 4-103 (104)
65 PF15410 PH_9: Pleckstrin homo 99.1 6.9E-10 1.5E-14 96.9 10.0 106 180-312 2-117 (119)
66 cd00900 PH-like Pleckstrin hom 99.1 1.5E-09 3.3E-14 88.7 11.1 92 181-312 2-99 (99)
67 KOG4424 Predicted Rho/Rac guan 99.1 8.9E-10 1.9E-14 115.4 11.9 229 6-319 144-375 (623)
68 KOG0702 Predicted GTPase-activ 99.0 1.4E-10 3E-15 119.3 4.8 97 390-489 12-109 (524)
69 cd01256 PH_dynamin Dynamin ple 99.0 5.5E-09 1.2E-13 85.6 9.8 93 178-311 1-103 (110)
70 KOG0690 Serine/threonine prote 98.9 4.9E-09 1.1E-13 103.8 7.7 105 175-317 12-120 (516)
71 cd01259 PH_Apbb1ip Apbb1ip (Am 98.8 1.2E-08 2.6E-13 86.1 7.4 100 180-313 2-108 (114)
72 cd01234 PH_CADPS CADPS (Ca2+-d 98.8 7.6E-09 1.7E-13 85.5 5.8 94 179-313 3-110 (117)
73 KOG1090 Predicted dual-specifi 98.8 2E-09 4.4E-14 117.5 3.1 103 172-313 1628-1731(1732)
74 cd07307 BAR The Bin/Amphiphysi 98.7 5.1E-08 1.1E-12 90.5 10.3 93 7-99 100-193 (194)
75 cd01261 PH_SOS Son of Sevenles 98.7 1.7E-07 3.7E-12 80.5 11.7 107 177-314 3-110 (112)
76 PF14593 PH_3: PH domain; PDB: 98.5 1.7E-06 3.6E-11 73.4 11.9 91 176-316 11-102 (104)
77 cd01243 PH_MRCK MRCK (myotonic 98.5 2E-06 4.4E-11 73.7 11.4 108 179-312 3-118 (122)
78 cd01242 PH_ROK Rok (Rho- assoc 98.5 2.5E-06 5.3E-11 72.1 11.6 104 180-313 2-110 (112)
79 cd01239 PH_PKD Protein kinase 98.4 2.6E-06 5.6E-11 72.4 9.4 96 179-312 1-117 (117)
80 KOG3751 Growth factor receptor 98.2 3.8E-06 8.2E-11 87.6 7.9 110 169-313 308-424 (622)
81 smart00721 BAR BAR domain. 98.2 1.2E-05 2.5E-10 78.3 11.0 96 7-102 140-238 (239)
82 KOG3640 Actin binding protein 98.1 7E-06 1.5E-10 90.6 7.5 103 176-316 988-1109(1116)
83 KOG2059 Ras GTPase-activating 98.1 6.2E-06 1.3E-10 88.7 6.4 96 178-313 565-664 (800)
84 PTZ00267 NIMA-related protein 97.9 2.1E-05 4.6E-10 84.7 8.3 100 177-313 376-476 (478)
85 KOG0932 Guanine nucleotide exc 97.9 6.7E-06 1.5E-10 86.2 4.1 42 273-314 576-618 (774)
86 PF03114 BAR: BAR domain; Int 97.8 0.00026 5.6E-09 67.6 12.5 93 7-102 137-229 (229)
87 cd01226 PH_exo84 Exocyst compl 97.8 0.00029 6.2E-09 59.1 10.8 39 275-313 60-98 (100)
88 cd01262 PH_PDK1 3-Phosphoinosi 97.7 0.00019 4.1E-09 58.7 8.3 87 178-312 1-87 (89)
89 PTZ00283 serine/threonine prot 97.7 0.00045 9.8E-09 74.9 13.3 36 278-313 453-489 (496)
90 cd01240 PH_beta-ARK Beta adren 97.7 6.3E-05 1.4E-09 63.2 4.9 99 177-316 2-101 (116)
91 cd01222 PH_clg Clg (common-sit 97.7 0.00087 1.9E-08 56.2 11.8 34 280-313 59-95 (97)
92 cd01258 PH_syntrophin Syntroph 97.6 0.00028 6E-09 60.2 8.1 34 278-311 72-107 (108)
93 PF12814 Mcp5_PH: Meiotic cell 97.5 0.0012 2.6E-08 57.9 11.6 36 279-314 87-122 (123)
94 cd07608 BAR_ArfGAP_fungi The B 97.5 0.00059 1.3E-08 63.9 9.1 80 7-91 102-182 (192)
95 cd01224 PH_Collybistin Collybi 97.4 0.0029 6.4E-08 53.9 12.1 95 178-311 2-105 (109)
96 KOG0248 Cytoplasmic protein Ma 97.4 9.3E-05 2E-09 79.5 3.3 98 176-316 247-344 (936)
97 KOG3723 PH domain protein Melt 97.3 0.00015 3.2E-09 76.5 2.6 39 279-317 802-840 (851)
98 PLN02866 phospholipase D 97.2 0.0022 4.9E-08 73.2 11.9 37 278-314 272-308 (1068)
99 PLN00188 enhanced disease resi 97.2 0.0017 3.6E-08 71.5 10.3 104 178-319 4-115 (719)
100 cd01221 PH_ephexin Ephexin Ple 97.2 0.0043 9.3E-08 54.3 10.3 33 278-310 81-119 (125)
101 KOG1739 Serine/threonine prote 96.9 0.0016 3.6E-08 67.7 6.5 93 178-313 24-116 (611)
102 KOG3531 Rho guanine nucleotide 96.9 0.00023 5E-09 78.1 -0.0 93 179-313 925-1019(1036)
103 cd07595 BAR_RhoGAP_Rich-like T 96.6 0.029 6.3E-07 55.1 12.5 99 7-106 127-229 (244)
104 KOG3531 Rho guanine nucleotide 96.5 0.0018 3.8E-08 71.4 3.6 197 40-321 651-852 (1036)
105 cd01225 PH_Cool_Pix Cool (clon 96.5 0.02 4.4E-07 48.7 8.7 53 261-313 56-109 (111)
106 KOG1117 Rho- and Arf-GTPase ac 96.3 0.0091 2E-07 66.2 7.1 96 178-312 492-600 (1186)
107 cd01232 PH_TRIO Trio pleckstri 96.3 0.073 1.6E-06 46.1 11.3 35 280-314 74-113 (114)
108 cd01223 PH_Vav Vav pleckstrin 96.0 0.042 9.1E-07 47.4 8.6 38 278-315 74-113 (116)
109 cd07590 BAR_Bin3 The Bin/Amphi 95.9 0.093 2E-06 50.9 11.4 98 8-105 115-216 (225)
110 KOG3543 Ca2+-dependent activat 95.6 0.004 8.6E-08 66.6 0.7 100 179-319 465-571 (1218)
111 PF15406 PH_6: Pleckstrin homo 95.6 0.035 7.5E-07 47.0 6.0 30 281-310 81-110 (112)
112 cd07618 BAR_Rich1 The Bin/Amph 95.5 0.24 5.2E-06 48.6 12.5 99 7-106 127-231 (246)
113 KOG0521 Putative GTPase activa 95.2 0.0044 9.5E-08 70.2 -0.7 74 398-475 625-699 (785)
114 cd07594 BAR_Endophilin_B The B 95.1 0.19 4.1E-06 48.8 10.3 89 8-100 140-228 (229)
115 cd07592 BAR_Endophilin_A The B 94.9 0.3 6.6E-06 47.3 11.1 83 8-102 135-217 (223)
116 cd07593 BAR_MUG137_fungi The B 94.9 0.33 7.2E-06 46.8 11.3 86 8-99 121-206 (215)
117 cd01228 PH_BCR-related BCR (br 94.8 0.18 3.9E-06 41.8 7.9 30 283-312 63-93 (96)
118 cd07591 BAR_Rvs161p The Bin/Am 94.6 0.44 9.6E-06 46.2 11.6 93 10-102 118-212 (224)
119 cd07616 BAR_Endophilin_B1 The 94.6 0.31 6.8E-06 47.3 10.3 88 8-99 140-227 (229)
120 cd07588 BAR_Amphiphysin The Bi 94.2 0.68 1.5E-05 44.5 11.6 93 12-104 115-209 (211)
121 PF15408 PH_7: Pleckstrin homo 94.1 0.027 5.8E-07 45.4 1.6 32 280-311 63-95 (104)
122 cd01227 PH_Dbs Dbs (DBL's big 94.1 0.65 1.4E-05 41.3 10.5 37 280-316 80-118 (133)
123 cd07611 BAR_Amphiphysin_I_II T 94.0 0.91 2E-05 43.5 12.1 95 11-105 114-210 (211)
124 cd00011 BAR_Arfaptin_like The 94.0 0.9 1.9E-05 43.3 11.8 90 8-97 105-200 (203)
125 cd01248 PH_PLC Phospholipase C 93.8 0.23 5E-06 42.8 7.1 34 278-311 77-114 (115)
126 cd07619 BAR_Rich2 The Bin/Amph 93.8 1 2.2E-05 44.3 12.2 92 7-106 127-233 (248)
127 cd07620 BAR_SH3BP1 The Bin/Amp 93.6 0.77 1.7E-05 45.1 11.0 90 6-103 126-239 (257)
128 cd07600 BAR_Gvp36 The Bin/Amph 93.6 0.66 1.4E-05 45.5 10.7 87 8-99 154-240 (242)
129 cd07612 BAR_Bin2 The Bin/Amphi 93.6 1.1 2.3E-05 43.1 11.7 94 12-105 115-210 (211)
130 cd07613 BAR_Endophilin_A1 The 93.5 0.86 1.9E-05 44.1 11.0 63 40-103 156-218 (223)
131 cd07660 BAR_Arfaptin The Bin/A 93.4 0.94 2E-05 43.0 10.8 89 8-96 104-196 (201)
132 PF06456 Arfaptin: Arfaptin-li 93.2 1.1 2.3E-05 43.7 11.3 87 8-94 137-229 (229)
133 PF15404 PH_4: Pleckstrin homo 93.0 0.94 2E-05 42.5 10.1 24 288-311 160-183 (185)
134 KOG1737 Oxysterol-binding prot 92.6 0.078 1.7E-06 59.7 2.7 96 179-319 78-174 (799)
135 cd01231 PH_Lnk LNK-family Plec 92.5 0.56 1.2E-05 39.3 6.9 35 277-311 71-106 (107)
136 KOG2070 Guanine nucleotide exc 92.3 1.1 2.5E-05 47.4 10.5 47 265-311 357-404 (661)
137 cd07615 BAR_Endophilin_A3 The 92.2 1.5 3.3E-05 42.4 10.6 63 40-103 156-218 (223)
138 PF08458 PH_2: Plant pleckstri 92.0 1.6 3.4E-05 37.4 9.2 39 277-315 67-105 (110)
139 cd07614 BAR_Endophilin_A2 The 91.4 2.1 4.5E-05 41.5 10.7 83 8-102 135-217 (223)
140 cd07599 BAR_Rvs167p The Bin/Am 90.8 2.3 5E-05 40.8 10.5 85 11-96 120-211 (216)
141 KOG3771 Amphiphysin [Intracell 89.3 3.5 7.6E-05 43.6 11.0 95 13-107 134-230 (460)
142 PF08397 IMD: IRSp53/MIM homol 88.9 8.1 0.00018 37.2 12.7 52 45-96 151-203 (219)
143 cd07661 BAR_ICA69 The Bin/Amph 88.6 5.8 0.00013 37.4 10.8 90 8-97 105-200 (204)
144 cd07659 BAR_PICK1 The Bin/Amph 88.4 5.3 0.00011 38.0 10.4 53 44-96 157-209 (215)
145 cd07617 BAR_Endophilin_B2 The 88.3 3.7 8E-05 39.6 9.6 58 40-99 160-218 (220)
146 cd07624 BAR_SNX7_30 The Bin/Am 88.0 2.5 5.5E-05 40.2 8.3 61 39-99 139-199 (200)
147 KOG3523 Putative guanine nucle 86.1 7.5 0.00016 42.5 11.2 34 277-310 552-591 (695)
148 PF15405 PH_5: Pleckstrin homo 86.1 1.2 2.6E-05 39.7 4.6 35 278-312 97-134 (135)
149 KOG3549 Syntrophins (type gamm 86.0 5.5 0.00012 40.6 9.6 40 278-317 350-390 (505)
150 cd07596 BAR_SNX The Bin/Amphip 84.3 11 0.00024 35.4 10.8 63 36-98 154-216 (218)
151 cd07598 BAR_FAM92 The Bin/Amph 84.3 15 0.00034 35.2 11.6 67 35-101 136-202 (211)
152 cd05394 RasGAP_RASA2 RASA2 (or 83.0 1.1 2.4E-05 45.6 3.3 27 177-203 282-312 (313)
153 cd05135 RasGAP_RASAL Ras GTPas 82.3 1.6 3.4E-05 45.0 4.2 27 177-203 302-333 (333)
154 cd05128 RasGAP_GAP1_like The G 81.5 0.84 1.8E-05 46.6 1.9 28 176-203 284-315 (315)
155 cd07622 BAR_SNX4 The Bin/Amphi 81.5 21 0.00045 34.0 11.3 63 37-99 136-198 (201)
156 PF09325 Vps5: Vps5 C terminal 81.5 19 0.00041 34.6 11.3 89 10-98 137-234 (236)
157 cd05134 RasGAP_RASA3 RASA3 (or 81.3 1.1 2.3E-05 45.7 2.5 27 177-203 279-309 (310)
158 cd07628 BAR_Atg24p The Bin/Amp 81.1 17 0.00036 34.2 10.4 61 39-99 124-184 (185)
159 cd07627 BAR_Vps5p The Bin/Amph 80.7 17 0.00037 34.9 10.6 62 36-97 152-213 (216)
160 PF10455 BAR_2: Bin/amphiphysi 80.5 14 0.00031 37.2 10.1 89 8-101 199-287 (289)
161 KOG0248 Cytoplasmic protein Ma 79.4 0.71 1.5E-05 50.6 0.6 100 174-319 255-354 (936)
162 KOG1118 Lysophosphatidic acid 78.6 16 0.00036 36.7 9.6 30 69-98 203-232 (366)
163 KOG3725 SH3 domain protein SH3 76.0 20 0.00044 35.1 9.2 59 37-96 199-257 (375)
164 cd07623 BAR_SNX1_2 The Bin/Amp 75.6 34 0.00073 33.1 11.0 86 14-99 129-221 (224)
165 KOG4424 Predicted Rho/Rac guan 74.5 4 8.7E-05 44.3 4.5 54 261-314 541-596 (623)
166 cd01255 PH_TIAM TIAM Pleckstri 73.8 40 0.00087 30.3 9.7 41 277-317 110-158 (160)
167 KOG4807 F-actin binding protei 73.7 0.037 8.1E-07 56.4 -10.2 36 278-313 79-114 (593)
168 KOG4236 Serine/threonine prote 72.9 2.9 6.3E-05 45.2 3.0 35 278-313 477-523 (888)
169 PRK12495 hypothetical protein; 72.1 2.4 5.2E-05 40.6 1.9 36 393-432 30-67 (226)
170 KOG0517 Beta-spectrin [Cytoske 70.0 0.23 5E-06 59.6 -6.3 107 179-318 2300-2414(2473)
171 cd07589 BAR_DNMBP The Bin/Amph 69.8 35 0.00076 32.2 9.4 72 14-94 115-186 (195)
172 PF00643 zf-B_box: B-box zinc 69.5 2.5 5.4E-05 29.2 1.1 33 403-435 3-36 (42)
173 cd07667 BAR_SNX30 The Bin/Amph 69.3 61 0.0013 31.8 11.0 83 10-97 155-237 (240)
174 KOG1738 Membrane-associated gu 68.1 0.9 1.9E-05 49.6 -2.0 37 179-216 563-601 (638)
175 KOG3551 Syntrophins (type beta 65.3 14 0.0003 38.4 5.8 39 280-318 236-276 (506)
176 cd07685 F-BAR_Fes The F-BAR (F 65.0 28 0.0006 34.0 7.5 74 7-83 137-213 (237)
177 cd07605 I-BAR_IMD Inverse (I)- 64.9 85 0.0018 30.5 11.0 38 64-101 181-219 (223)
178 KOG3551 Syntrophins (type beta 64.9 7.2 0.00016 40.4 3.8 107 177-319 291-407 (506)
179 KOG1170 Diacylglycerol kinase 64.6 0.3 6.6E-06 54.3 -6.4 36 278-313 59-94 (1099)
180 cd07664 BAR_SNX2 The Bin/Amphi 64.4 1E+02 0.0022 30.1 11.6 67 33-99 158-231 (234)
181 PF01286 XPA_N: XPA protein N- 64.3 2.2 4.7E-05 28.6 -0.0 27 404-430 4-31 (34)
182 TIGR00613 reco DNA repair prot 64.2 7 0.00015 37.9 3.5 33 400-432 144-177 (241)
183 PF11781 RRN7: RNA polymerase 61.5 5.9 0.00013 26.9 1.7 27 402-431 7-33 (36)
184 PF08271 TF_Zn_Ribbon: TFIIB z 60.4 5.8 0.00013 27.8 1.6 27 405-432 2-28 (43)
185 cd05395 RasGAP_RASA4 Ras GTPas 57.6 6.7 0.00015 40.4 2.1 26 178-203 301-331 (337)
186 cd07621 BAR_SNX5_6 The Bin/Amp 57.1 1.4E+02 0.003 29.0 10.8 64 33-96 150-213 (219)
187 KOG3876 Arfaptin and related p 57.0 88 0.0019 31.0 9.4 82 8-89 227-312 (341)
188 smart00401 ZnF_GATA zinc finge 56.4 8.9 0.00019 28.2 2.1 36 403-438 3-40 (52)
189 PF00320 GATA: GATA zinc finge 56.0 5.4 0.00012 26.9 0.8 32 406-437 1-34 (36)
190 cd07662 BAR_SNX6 The Bin/Amphi 54.8 1.8E+02 0.0038 28.2 11.1 78 10-96 135-212 (218)
191 KOG0592 3-phosphoinositide-dep 52.9 19 0.00041 39.2 4.6 86 177-312 450-536 (604)
192 PF15518 L_protein_N: L protei 52.8 27 0.00059 32.2 4.9 62 14-81 3-64 (183)
193 PRK00085 recO DNA repair prote 52.2 7.9 0.00017 37.7 1.6 32 400-431 146-178 (247)
194 TIGR02419 C4_traR_proteo phage 52.1 4.3 9.3E-05 31.2 -0.3 33 400-433 28-62 (63)
195 KOG2996 Rho guanine nucleotide 51.7 3.8E+02 0.0082 29.8 17.0 38 278-315 474-513 (865)
196 TIGR01834 PHA_synth_III_E poly 49.9 3.1E+02 0.0066 28.2 16.1 59 14-72 155-213 (320)
197 PF14803 Nudix_N_2: Nudix N-te 48.8 7.8 0.00017 26.0 0.6 29 404-433 1-32 (34)
198 cd07663 BAR_SNX5 The Bin/Amphi 48.0 2.6E+02 0.0056 27.0 11.1 61 36-96 152-212 (218)
199 cd07626 BAR_SNX9_like The Bin/ 47.4 98 0.0021 29.5 8.1 54 41-94 139-192 (199)
200 cd07666 BAR_SNX7 The Bin/Amphi 47.3 2.6E+02 0.0056 27.5 11.2 85 6-96 155-239 (243)
201 cd07657 F-BAR_Fes_Fer The F-BA 46.0 3E+02 0.0064 26.9 11.9 61 7-67 132-194 (237)
202 KOG4407 Predicted Rho GTPase-a 44.6 2.3 5E-05 50.0 -3.9 46 268-313 995-1041(1973)
203 cd07646 I-BAR_IMD_IRSp53 Inver 44.4 3.1E+02 0.0068 26.7 11.1 37 60-96 180-217 (232)
204 KOG0457 Histone acetyltransfer 44.1 24 0.00053 37.2 3.7 40 423-463 38-86 (438)
205 cd07634 BAR_GAP10-like The Bin 43.8 2.7E+02 0.0059 26.7 10.4 74 10-94 87-164 (207)
206 KOG4305 RhoGEF GTPase [Signal 43.8 1.6E+02 0.0035 34.9 10.4 39 283-321 656-694 (1029)
207 PRK11019 hypothetical protein; 43.0 4.9 0.00011 33.1 -1.2 38 402-440 35-74 (88)
208 KOG1264 Phospholipase C [Lipid 42.3 41 0.0009 38.3 5.2 55 264-318 857-915 (1267)
209 KOG0119 Splicing factor 1/bran 41.7 85 0.0018 33.8 7.2 27 291-317 206-232 (554)
210 KOG3362 Predicted BBOX Zn-fing 39.3 11 0.00024 33.6 0.3 34 401-435 116-150 (156)
211 COG1381 RecO Recombinational D 36.7 17 0.00037 35.8 1.2 30 401-430 152-182 (251)
212 PF10456 BAR_3_WASP_bdg: WASP- 36.4 1.9E+02 0.0041 28.4 8.3 56 40-95 175-230 (237)
213 cd07630 BAR_SNX_like The Bin/A 36.3 3.8E+02 0.0082 25.4 10.2 58 38-95 136-193 (198)
214 PHA00080 DksA-like zinc finger 35.9 10 0.00022 30.0 -0.5 32 401-433 29-62 (72)
215 PF01258 zf-dskA_traR: Prokary 35.6 3.7 8.1E-05 27.6 -2.6 29 405-433 5-34 (36)
216 PF04192 Utp21: Utp21 specific 35.3 2.8E+02 0.0061 27.1 9.4 59 60-126 166-225 (237)
217 PF09712 PHA_synth_III_E: Poly 35.1 4.9E+02 0.011 26.3 18.3 94 13-106 137-243 (293)
218 PF11172 DUF2959: Protein of u 34.7 4.1E+02 0.009 25.3 12.1 21 11-31 38-58 (201)
219 COG2174 RPL34A Ribosomal prote 34.4 21 0.00046 29.3 1.2 35 397-431 28-79 (93)
220 COG1997 RPL43A Ribosomal prote 34.3 39 0.00086 27.7 2.7 32 399-432 31-62 (89)
221 cd07603 BAR_ACAPs The Bin/Amph 33.9 2.8E+02 0.006 26.4 8.9 27 37-63 97-123 (200)
222 KOG4460 Nuclear pore complex, 33.4 4E+02 0.0087 29.4 10.6 112 6-119 571-682 (741)
223 cd07606 BAR_SFC_plant The Bin/ 33.3 4E+02 0.0086 25.4 9.9 59 36-94 98-160 (202)
224 cd07645 I-BAR_IMD_BAIAP2L1 Inv 33.2 3.9E+02 0.0084 25.9 9.6 35 62-96 180-215 (226)
225 cd07640 BAR_ASAP3 The Bin/Amph 32.6 4.5E+02 0.0098 25.2 9.9 32 34-65 96-128 (213)
226 PF10764 Gin: Inhibitor of sig 32.4 24 0.00052 25.3 1.1 26 405-431 1-26 (46)
227 cd07171 NR_DBD_ER DNA-binding 31.3 23 0.00049 28.7 0.9 31 402-435 2-32 (82)
228 smart00290 ZnF_UBP Ubiquitin C 31.1 31 0.00067 24.6 1.5 24 405-428 1-24 (50)
229 cd07665 BAR_SNX1 The Bin/Amphi 30.7 5.2E+02 0.011 25.2 11.3 67 33-99 158-231 (234)
230 PF07282 OrfB_Zn_ribbon: Putat 30.5 32 0.0007 26.3 1.6 27 403-431 28-54 (69)
231 cd06966 NR_DBD_CAR DNA-binding 30.4 28 0.00061 28.9 1.3 29 404-435 1-29 (94)
232 cd07160 NR_DBD_LXR DNA-binding 30.4 29 0.00064 29.3 1.5 31 402-435 17-47 (101)
233 cd07163 NR_DBD_TLX DNA-binding 29.7 32 0.0007 28.4 1.6 30 403-435 6-35 (92)
234 PRK13715 conjugal transfer pro 29.6 10 0.00022 30.1 -1.4 33 402-434 33-66 (73)
235 KOG4047 Docking protein 1 (p62 29.2 31 0.00068 36.6 1.7 28 177-204 7-35 (429)
236 KOG1264 Phospholipase C [Lipid 29.0 57 0.0012 37.3 3.7 37 175-213 472-508 (1267)
237 cd06968 NR_DBD_ROR DNA-binding 28.8 27 0.00059 29.1 1.0 31 402-435 4-34 (95)
238 cd00202 ZnF_GATA Zinc finger D 28.8 21 0.00046 26.5 0.3 33 405-437 1-35 (54)
239 cd07170 NR_DBD_ERR DNA-binding 28.5 26 0.00056 29.4 0.8 29 404-435 5-33 (97)
240 cd07686 F-BAR_Fer The F-BAR (F 28.4 5.3E+02 0.011 25.2 9.9 73 7-82 133-209 (234)
241 PF13119 DUF3973: Domain of un 27.9 21 0.00046 24.6 0.1 14 424-437 2-15 (41)
242 PRK00423 tfb transcription ini 27.6 41 0.00089 34.2 2.3 31 402-433 10-40 (310)
243 cd07625 BAR_Vps17p The Bin/Amp 27.3 5.9E+02 0.013 24.8 11.1 58 32-89 155-219 (230)
244 PF07189 SF3b10: Splicing fact 27.1 1.6E+02 0.0034 23.8 5.0 61 13-77 5-71 (79)
245 KOG3520 Predicted guanine nucl 27.1 96 0.0021 37.0 5.2 43 278-320 683-728 (1167)
246 COG1734 DksA DnaK suppressor p 26.9 12 0.00026 32.7 -1.6 30 404-433 81-111 (120)
247 KOG3507 DNA-directed RNA polym 26.3 35 0.00076 25.8 1.0 28 404-436 21-48 (62)
248 smart00659 RPOLCX RNA polymera 26.2 37 0.00081 24.1 1.1 23 405-430 4-26 (44)
249 cd07157 2DBD_NR_DBD1 The first 26.1 38 0.00082 27.7 1.3 28 405-435 2-29 (86)
250 cd07173 NR_DBD_AR DNA-binding 25.8 27 0.00059 28.3 0.4 30 403-435 3-32 (82)
251 cd07629 BAR_Atg20p The Bin/Amp 25.5 5.6E+02 0.012 23.9 11.0 57 41-97 127-184 (187)
252 cd03031 GRX_GRX_like Glutaredo 24.8 51 0.0011 29.8 2.1 35 393-436 89-123 (147)
253 cd06955 NR_DBD_VDR DNA-binding 24.6 45 0.00097 28.5 1.6 29 404-435 7-35 (107)
254 PF14471 DUF4428: Domain of un 24.4 21 0.00046 26.2 -0.4 44 405-449 1-46 (51)
255 PRK11166 chemotaxis regulator 24.3 5.6E+02 0.012 24.7 9.1 33 35-72 40-72 (214)
256 cd07639 BAR_ACAP1 The Bin/Amph 23.6 6.5E+02 0.014 24.0 11.2 59 37-95 97-158 (200)
257 PF08792 A2L_zn_ribbon: A2L zi 23.3 52 0.0011 21.8 1.3 29 403-433 3-31 (33)
258 cd07644 I-BAR_IMD_BAIAP2L2 Inv 22.8 6.6E+02 0.014 24.1 9.0 38 59-96 168-206 (215)
259 PTZ00332 paraflagellar rod pro 22.7 1E+03 0.022 26.0 14.7 82 37-123 412-497 (589)
260 KOG3651 Protein kinase C, alph 22.5 3.8E+02 0.0082 27.3 7.7 55 44-98 287-341 (429)
261 COG1422 Predicted membrane pro 22.4 5.8E+02 0.013 24.3 8.6 45 73-117 53-97 (201)
262 PF06677 Auto_anti-p27: Sjogre 22.4 48 0.001 23.2 1.1 25 403-430 17-41 (41)
263 PRK11788 tetratricopeptide rep 22.4 65 0.0014 32.9 2.6 32 396-434 348-379 (389)
264 PF10168 Nup88: Nuclear pore c 22.4 9.1E+02 0.02 27.7 11.8 21 44-64 585-605 (717)
265 PRK04023 DNA polymerase II lar 22.2 88 0.0019 36.8 3.7 29 401-429 624-657 (1121)
266 PF06827 zf-FPG_IleRS: Zinc fi 22.1 37 0.0008 21.6 0.5 28 404-431 2-29 (30)
267 PF09297 zf-NADH-PPase: NADH p 21.6 70 0.0015 20.7 1.7 26 402-433 2-31 (32)
268 cd07161 NR_DBD_EcR DNA-binding 21.4 44 0.00096 27.6 0.9 29 404-435 2-30 (91)
269 cd07648 F-BAR_FCHO The F-BAR ( 21.4 7.7E+02 0.017 24.0 10.3 85 8-104 150-234 (261)
270 cd06962 NR_DBD_FXR DNA-binding 21.4 54 0.0012 26.6 1.4 28 405-435 3-30 (84)
271 PF04363 DUF496: Protein of un 21.4 4.7E+02 0.01 21.6 7.2 20 66-85 31-50 (95)
272 cd06967 NR_DBD_TR2_like DNA-bi 21.2 58 0.0013 26.6 1.6 29 404-435 4-32 (87)
273 cd07156 NR_DBD_VDR_like The DN 21.0 50 0.0011 25.9 1.1 27 406-435 1-27 (72)
274 cd07169 NR_DBD_GCNF_like DNA-b 21.0 43 0.00092 27.6 0.7 31 402-435 5-35 (90)
275 cd07601 BAR_APPL The Bin/Amphi 20.9 7.6E+02 0.016 23.8 12.8 28 37-64 101-128 (215)
276 KOG3549 Syntrophins (type gamm 20.6 1.2E+02 0.0027 31.2 4.0 40 277-316 222-263 (505)
277 cd06970 NR_DBD_PNR DNA-binding 20.6 64 0.0014 26.7 1.7 30 403-435 6-35 (92)
278 COG2158 Uncharacterized protei 20.5 73 0.0016 27.0 2.0 31 406-438 45-77 (112)
279 cd07172 NR_DBD_GR_PR DNA-bindi 20.3 48 0.001 26.5 0.9 29 404-435 3-31 (78)
280 KOG1597 Transcription initiati 20.3 83 0.0018 31.7 2.7 38 405-445 2-40 (308)
281 cd07641 BAR_ASAP1 The Bin/Amph 20.3 7.9E+02 0.017 23.7 10.2 33 33-65 95-128 (215)
282 PF08287 DASH_Spc19: Spc19; I 20.2 6.6E+02 0.014 22.8 9.3 56 60-123 33-88 (153)
283 PF03604 DNA_RNApol_7kD: DNA d 20.0 43 0.00093 22.1 0.4 23 405-430 2-24 (32)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-60 Score=524.51 Aligned_cols=377 Identities=43% Similarity=0.638 Sum_probs=305.2
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
++.||++++.||.+++||.+++|++++.+..|.+++|..+|+.|++.+||||.+|+.+|.+|++++++++++||+++.+|
T Consensus 126 kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~f 205 (785)
T KOG0521|consen 126 KKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINF 205 (785)
T ss_pred hHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccch
Confidence 78999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLIEA 166 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~~ 166 (491)
|++|++++.+++||+.++..++++++.+++.+++.++++++.++.+.+.+.+. .... ..|.+.
T Consensus 206 F~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~-~~~~-~~~~~~--------------- 268 (785)
T KOG0521|consen 206 FKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRYQELRSASNLESRP-KSDS-ASPSGG--------------- 268 (785)
T ss_pred hcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhc-cccc-cccccc---------------
Confidence 99999999999999999999999999999999999999999888777665554 1111 112211
Q ss_pred HHhhhccCCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccc
Q 011187 167 AMQSAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSS 246 (491)
Q Consensus 167 ~~~~~~~~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s 246 (491)
+......+.|||+|+.+...+.|.||||.+. ++.+.|........
T Consensus 269 ------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~~~l~~~~r~~~~~---------------------------- 313 (785)
T KOG0521|consen 269 ------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-DGQLGYQHRGADAE---------------------------- 313 (785)
T ss_pred ------cccchhhhhhhhhhhcccchhhHHhhhhhhh-cccccccccccccc----------------------------
Confidence 1112345689999998887899999999997 55455544432210
Q ss_pred ccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCccccc
Q 011187 247 HYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVN 326 (491)
Q Consensus 247 ~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~~~~~~ 326 (491)
.....++.+|.|++.++..+++|||+|++++++|+|||+|+.+..+||.+|+++|..+++...++...
T Consensus 314 ------------~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~ 381 (785)
T KOG0521|consen 314 ------------NVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDS 381 (785)
T ss_pred ------------ccccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhccCccccc
Confidence 02346688999999887779999999999999999999999999999999999999999998776422
Q ss_pred ccccCCCCCCCCCccccccccCCccCCCCCCcchhhhhccccccCCCCccCCcccchhhhhccCccHHHHHHcccCCCcc
Q 011187 327 VKHCLSSGPKESFDRCFIRESGLLVDSPYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKC 406 (491)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C 406 (491)
...+. .+++.....+. +..++ . .++ .. ...+....+..++..|||..|
T Consensus 382 ~~~~~----~~~~~~~~~s~--~~~~s------~--------~~s--~~----------~~~~~~~~~~~vq~~pgN~~c 429 (785)
T KOG0521|consen 382 TGGRN----TQSGHSSSASY--STITS------A--------NTS--RE----------RLNKGISVIEEVQSVPGNAQC 429 (785)
T ss_pred ccCCC----ccccccccccc--ccccc------c--------ccc--cc----------ccccCcchhhhhhcCCchhhh
Confidence 21111 11111110000 00000 0 000 00 001112257789999999999
Q ss_pred cCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCCC
Q 011187 407 ADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGN 481 (491)
Q Consensus 407 ~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~~ 481 (491)
+|||+++|+|+|+|+||.+||+||||||+||||||||+||+|| .|+++.+.+++.+||..+|.|||+++++-.
T Consensus 430 ~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD--~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~ 502 (785)
T KOG0521|consen 430 CDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD--VWEPELLLLFKNLGNKYVNEIYEALLPSYD 502 (785)
T ss_pred hhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--ccCcHHHHHHHHhCcchhhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999 699999999999999999999999999765
No 2
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-36 Score=305.22 Aligned_cols=259 Identities=34% Similarity=0.571 Sum_probs=174.7
Q ss_pred HHHHHhhhccCCcceeEEEEEeecCCCc-ccCceEEEEEEecCceEEEEecC----------------------CCCCCc
Q 011187 164 IEAAMQSAVKGKVQTIKQGYLSKRSSNL-RADWKRRFFVLDSRGLLYYYRKP----------------------WSWNSA 220 (491)
Q Consensus 164 ~~~~~~~~~~~~~~~~keGyL~Krs~~~-~k~WkrRwFvL~~~g~L~Yyk~~----------------------~~~~~~ 220 (491)
.+......+.|+..++|+|.|+||+++. .+.||+.|..|..+|.|.||.+- ++.+|.
T Consensus 288 ~e~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~ppl 367 (749)
T KOG0705|consen 288 LENHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPPL 367 (749)
T ss_pred hhhhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCcc
Confidence 3444555677888999999999998874 48999999999999999999662 222222
Q ss_pred CC----CccccccCCCCCc------cccccccccccccCCCcccc-ccc-------------ceeEeecCcceeecCCCC
Q 011187 221 AG----SQSSIQRSNPSET------SQGLLSRWLSSHYHGGVHDE-KSV-------------ARHTVNLLTSTIKPDADQ 276 (491)
Q Consensus 221 ~~----~~~~~~~~~~~~~------g~g~~~~~~~s~~~~~v~~~-~~~-------------~~~~i~l~~~~v~~~~~~ 276 (491)
.. ..+....+|.... -.|+ +..++... |++.+. .+. ..+.-...+.+.+ .
T Consensus 368 atsa~ap~Ss~~~NGl~Kdm~~~rSd~Gl-~ss~~~Sp-gsissaittspkl~pPpSp~~nkKkh~RKksTnskh--n-- 441 (749)
T KOG0705|consen 368 ATSACAPSSSSKSNGLSKDMEPRRSDVGL-GSSDCTSP-GSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKH--N-- 441 (749)
T ss_pred ccccccccccccccccccccccccCCCCC-CcccCCCC-CCcccccccCccCCCCCCccchhhhhhhhccCCCCC--C--
Confidence 11 1111011111000 0010 11111111 111110 000 0000011111111 1
Q ss_pred CCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCcccccccccCCCCCCCCCccccccccCCccCCCC
Q 011187 277 SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVNVKHCLSSGPKESFDRCFIRESGLLVDSPY 355 (491)
Q Consensus 277 ~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~s~~~~~~ 355 (491)
.+..|||.|+... .+|+|.|.+.+|+++||+||+..|...|+.. +....+.++
T Consensus 442 dEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~c--essk~Ks~~------------------------ 495 (749)
T KOG0705|consen 442 DEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSC--ESSKSKSRL------------------------ 495 (749)
T ss_pred ccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhh--hhhcchhcc------------------------
Confidence 1336899999886 7999999999999999999999998776542 221111000
Q ss_pred CCcchhhhhccccccCCCCccCCcccchhhhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 356 VDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
+ + ..+.-.++.++..+||..|+||+.++|.|||+|+|+.+||+|+||||.
T Consensus 496 --------------~---------s-------qsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~ 545 (749)
T KOG0705|consen 496 --------------T---------S-------QSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRN 545 (749)
T ss_pred --------------c---------h-------hhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhh
Confidence 0 0 001235788999999999999999999999999999999999999999
Q ss_pred CCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCCCCCCCc
Q 011187 436 LGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTD 486 (491)
Q Consensus 436 lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~~~~~~~ 486 (491)
||+|+|+||||.|| .|..|.+.+|..+||+.||++||..+.-...|-|+
T Consensus 546 lgt~lSrvr~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G~~KPs~~ 594 (749)
T KOG0705|consen 546 LGTHLSRVRSLELD--DWPVELLKVMSAIGNDLANSVWEGSSQGQTKPSPD 594 (749)
T ss_pred hhhhhhhhhccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccCCcCCCcc
Confidence 99999999999999 89999999999999999999999976655555444
No 3
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-33 Score=288.63 Aligned_cols=233 Identities=23% Similarity=0.404 Sum_probs=188.9
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
|++|||..++|++.|+|++.||.+| ++.++|++.|+...|+.|-++||+||+++++||++|+|+|||++++|+++++.|
T Consensus 131 KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f 209 (812)
T KOG1451|consen 131 KKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSF 209 (812)
T ss_pred HhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6899999999999999999999998 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLIEA 166 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~~ 166 (491)
||.|+++.+|+.||.++|+..+|++|+.|+..+.+.+++++++++ +|-.+
T Consensus 210 ~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke---------------~p~e~--------------- 259 (812)
T KOG1451|consen 210 FHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKE---------------SPTED--------------- 259 (812)
T ss_pred hhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhh---------------Ccccc---------------
Confidence 999999999999999999999999999999988877777665442 22211
Q ss_pred HHhhhccCCcceeEEEEEeecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccc
Q 011187 167 AMQSAVKGKVQTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLS 245 (491)
Q Consensus 167 ~~~~~~~~~~~~~keGyL~Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~ 245 (491)
+.....+++||||.+.+. +++.|.+.||+...+....- |.+.+...|-
T Consensus 260 ------k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~T-------------------Mvp~~qk~g~------ 308 (812)
T KOG1451|consen 260 ------KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFT-------------------MVPANQKTGT------ 308 (812)
T ss_pred ------cCCCCcccceeeeehhhhhccchhhhheeEeecccceEE-------------------EeecccCCCC------
Confidence 011235789999987654 67899999999864432111 1222211111
Q ss_pred cccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCe--EEEEEeCCHHHHHHHHHHHHHH
Q 011187 246 SHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 246 s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~r--t~~lqAeSe~e~~~WI~ai~~a 312 (491)
++ -...++.+..|+.+. .+..++||||+|.+.+| ++++||-||+|+..||+|+.++
T Consensus 309 ---k~-------g~~~~~~lKsC~RRk-tdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 309 ---KM-------GQTATFKLKSCSRRK-TDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ---cC-------CCcceEEehhhccCc-ccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 00 112335566666665 47889999999999886 8999999999999999999876
No 4
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.98 E-value=4.1e-33 Score=270.04 Aligned_cols=94 Identities=48% Similarity=0.834 Sum_probs=89.3
Q ss_pred cCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHH
Q 011187 389 KNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIY 468 (491)
Q Consensus 389 ~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~ 468 (491)
++++.|..|.+.|+|+.|||||++.|+|||+|+|||||+.|+||||+|||||||||||+|| .|++|+|+.|+.+||.+
T Consensus 11 ~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~~ 88 (287)
T KOG0703|consen 11 RNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNAK 88 (287)
T ss_pred hHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcchh
Confidence 4667899999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhcccCCCCCCC
Q 011187 469 ANSVWEELLRIGNNSL 484 (491)
Q Consensus 469 ~n~~~e~~~~~~~~~~ 484 (491)
||++||+++|+....+
T Consensus 89 an~~~ea~~p~~~~~p 104 (287)
T KOG0703|consen 89 ANSYYEAKLPDPFRRP 104 (287)
T ss_pred hhhhccccCCccccCC
Confidence 9999999999886443
No 5
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=99.97 E-value=2.7e-31 Score=230.67 Aligned_cols=92 Identities=45% Similarity=0.873 Sum_probs=75.2
Q ss_pred cHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHH
Q 011187 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANS 471 (491)
Q Consensus 392 ~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~ 471 (491)
+.|+.|++.|+|+.|||||+++|+|||+|||||||+.|+|+||.||+|||+||||+|| .|++++|+.|+.+||.++|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHhcccCCCCCCCC
Q 011187 472 VWEELLRIGNNSLT 485 (491)
Q Consensus 472 ~~e~~~~~~~~~~~ 485 (491)
+||++.++...+.+
T Consensus 80 ~~e~~~~~~~~~~~ 93 (116)
T PF01412_consen 80 IWEANSPPPKKPPP 93 (116)
T ss_dssp HHTTTSTTTTTHCT
T ss_pred HHHcCCCCCCCCCC
Confidence 99999544444443
No 6
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=99.96 E-value=3.5e-30 Score=222.20 Aligned_cols=84 Identities=60% Similarity=1.005 Sum_probs=79.9
Q ss_pred cCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCC
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIG 480 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~ 480 (491)
|+|+.|||||+++|+|||+|||||||+.|+|+||.||+|||+||||+|| .|++++|++|+.+||.++|++||+++++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 5899999999999999999999999999999999999999999999999 79999999999999999999999999988
Q ss_pred CCCCCc
Q 011187 481 NNSLTD 486 (491)
Q Consensus 481 ~~~~~~ 486 (491)
..++|+
T Consensus 79 ~~~~~~ 84 (112)
T smart00105 79 SLKPPD 84 (112)
T ss_pred ccCCCC
Confidence 755543
No 7
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=4.4e-30 Score=256.27 Aligned_cols=89 Identities=53% Similarity=0.884 Sum_probs=84.7
Q ss_pred ccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHH
Q 011187 391 EKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYAN 470 (491)
Q Consensus 391 ~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n 470 (491)
.+.+..|+..++|++|||||+++|+|||+|||||||++||||||+||||||+||||+|| .|++++|..|..+||.+||
T Consensus 8 ~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a~ 85 (319)
T COG5347 8 RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNAN 85 (319)
T ss_pred HHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhhh
Confidence 45678889999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHhcccCCCC
Q 011187 471 SVWEELLRIGN 481 (491)
Q Consensus 471 ~~~e~~~~~~~ 481 (491)
+|||.++-...
T Consensus 86 ~~~e~~~~~~~ 96 (319)
T COG5347 86 RFYEKNLLDQL 96 (319)
T ss_pred hHhccCCCccc
Confidence 99999987754
No 8
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.93 E-value=1e-26 Score=239.85 Aligned_cols=98 Identities=22% Similarity=0.476 Sum_probs=90.9
Q ss_pred hhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHh
Q 011187 385 EYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSL 464 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~ 464 (491)
+.+++++++|+.|++.|+|+.|+|||+.+|.|||+|||||||++||||||.|| +|||||+|| .|++++|++|+.+
T Consensus 5 R~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~g 79 (648)
T PLN03119 5 REEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNG 79 (648)
T ss_pred HHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHh
Confidence 55678899999999999999999999999999999999999999999999998 499999999 7999999999999
Q ss_pred chHHHHHHHhcccCCCCCCCCcc
Q 011187 465 GNIYANSVWEELLRIGNNSLTDE 487 (491)
Q Consensus 465 GN~~~n~~~e~~~~~~~~~~~~~ 487 (491)
||.++|++||++|++...+.|..
T Consensus 80 GN~~AN~iyeanw~~~~~~~P~~ 102 (648)
T PLN03119 80 GNQRAREIYLKNWDHQRQRLPEN 102 (648)
T ss_pred chHHHHHHHHhhcccccCCCCCC
Confidence 99999999999999876555543
No 9
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.93 E-value=8.9e-27 Score=234.87 Aligned_cols=85 Identities=45% Similarity=0.757 Sum_probs=81.1
Q ss_pred ccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHH
Q 011187 391 EKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYAN 470 (491)
Q Consensus 391 ~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n 470 (491)
+..++.|+..+.|++|+|||+++|+|+|++|||||||+||++||+|||||++|||..|| .|+..++..|+.+||.+|+
T Consensus 11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~ 88 (454)
T KOG0706|consen 11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR 88 (454)
T ss_pred HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence 45788999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHhccc
Q 011187 471 SVWEELL 477 (491)
Q Consensus 471 ~~~e~~~ 477 (491)
.|+..+-
T Consensus 89 ~FFkqhg 95 (454)
T KOG0706|consen 89 VFFKQHG 95 (454)
T ss_pred HHHHHcC
Confidence 9998653
No 10
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.93 E-value=1.6e-26 Score=227.50 Aligned_cols=84 Identities=40% Similarity=0.736 Sum_probs=80.8
Q ss_pred cHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHH
Q 011187 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANS 471 (491)
Q Consensus 392 ~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~ 471 (491)
+.++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||.||+|||+|||++|| .|++++|++|+.+||.++|.
T Consensus 11 ~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~~ 88 (395)
T PLN03114 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQV 88 (395)
T ss_pred HHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHhccc
Q 011187 472 VWEELL 477 (491)
Q Consensus 472 ~~e~~~ 477 (491)
+|+.+.
T Consensus 89 fF~qhG 94 (395)
T PLN03114 89 FFKQYG 94 (395)
T ss_pred HHHHcC
Confidence 998764
No 11
>PLN03131 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-26 Score=240.14 Aligned_cols=99 Identities=25% Similarity=0.471 Sum_probs=91.2
Q ss_pred hhhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHH
Q 011187 384 LEYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQS 463 (491)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~ 463 (491)
.+++++++++|+.|++.|+|+.|+|||+++|.|||+|||||||++|+||||.|| +|||||+|| .|++++|+.|+.
T Consensus 4 kkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~ 78 (705)
T PLN03131 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQN 78 (705)
T ss_pred hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHH
Confidence 355677899999999999999999999999999999999999999999999997 399999999 899999999999
Q ss_pred hchHHHHHHHhcccCCCCCCCCcc
Q 011187 464 LGNIYANSVWEELLRIGNNSLTDE 487 (491)
Q Consensus 464 ~GN~~~n~~~e~~~~~~~~~~~~~ 487 (491)
+||.++|++||++|++.....|+.
T Consensus 79 gGN~~AN~iyeanwd~~r~~lP~~ 102 (705)
T PLN03131 79 GGNQRAREIYLKDWDQQRQRLPDN 102 (705)
T ss_pred hccHHHHHHHHhhcccccCCCCCC
Confidence 999999999999998776555543
No 12
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=1.9e-26 Score=244.88 Aligned_cols=198 Identities=32% Similarity=0.502 Sum_probs=159.6
Q ss_pred hccCCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCC
Q 011187 171 AVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (491)
Q Consensus 171 ~~~~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~ 250 (491)
.+.+...+.+.|||..+|-+. |-|.+|-+ +.+..|++..+.+ .|
T Consensus 185 ap~pp~pP~raG~lelrg~ka-----k~f~~vsp-~~vqL~knlq~f~----------------lg-------------- 228 (1186)
T KOG1117|consen 185 APPPPVPPPRAGWLELRGFKA-----KLFVAVSP-ERVQLYKNLQSFP----------------LG-------------- 228 (1186)
T ss_pred CCCCCCCCCCccchhcccccc-----ceeEEecC-ceeeeeccccccc----------------CC--------------
Confidence 334445688999999885332 34555544 4477778876632 12
Q ss_pred CcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCccccccccc
Q 011187 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPERVNVKHC 330 (491)
Q Consensus 251 ~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~~~~~~~~~~ 330 (491)
++...|.+..++|+.. ++ ..|++.||-|.|-|.|+++.+++.|+.|+|.+|+..+++.
T Consensus 229 -------igit~I~m~~~nvk~v----dr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd~---------- 286 (1186)
T KOG1117|consen 229 -------IGITFIYMEVSNVKEV----DR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSDY---------- 286 (1186)
T ss_pred -------ceeEEEeccccccccc----cc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccChH----------
Confidence 2223455666777753 33 6799999999999999999999999999998876544220
Q ss_pred CCCCCCCCCccccccccCCccCCCCCCcchhhhhccccccCCCCccCCcccchhhhhccCccHHHHHHcccCCCcccCCC
Q 011187 331 LSSGPKESFDRCFIRESGLLVDSPYVDQTTIEEHASKNITGGDHLHSSKSLGDLEYIVKNEKPIDLLRRVYGNNKCADCG 410 (491)
Q Consensus 331 ~~~~~~~~~~~~~~s~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dCg 410 (491)
.....++....|+.|||||
T Consensus 287 -------------------------------------------------------------evaeriW~ne~nr~cadC~ 305 (1186)
T KOG1117|consen 287 -------------------------------------------------------------EVAERIWLNEENRECADCG 305 (1186)
T ss_pred -------------------------------------------------------------HHHHHHHhccccccccccC
Confidence 1123567888999999999
Q ss_pred CCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCCCCCCCcc
Q 011187 411 ASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIGNNSLTDE 487 (491)
Q Consensus 411 ~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~~~~~~~~ 487 (491)
++.|+|||+|++|.||-.|+|-||+||.-+|+|+|++||.+.|+.+.+++|..+||.++|+||-+++|+++.++|+-
T Consensus 306 ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~ds 382 (1186)
T KOG1117|consen 306 SSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPDS 382 (1186)
T ss_pred CCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888874
No 13
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.4e-26 Score=226.21 Aligned_cols=84 Identities=39% Similarity=0.727 Sum_probs=76.7
Q ss_pred cHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHH
Q 011187 392 KPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANS 471 (491)
Q Consensus 392 ~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~ 471 (491)
+.|+.|+...+|++|+||++++|+|||++||||||.+|||+||.||||||.||||||| .|.+.+|+.|+.+||.+++.
T Consensus 8 r~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~e 85 (386)
T KOG0704|consen 8 RVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFRE 85 (386)
T ss_pred HHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHHH
Confidence 3444444445999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHhccc
Q 011187 472 VWEELL 477 (491)
Q Consensus 472 ~~e~~~ 477 (491)
|++..-
T Consensus 86 FL~s~~ 91 (386)
T KOG0704|consen 86 FLSSQG 91 (386)
T ss_pred HHhhCc
Confidence 998654
No 14
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.90 E-value=3.2e-23 Score=196.70 Aligned_cols=104 Identities=25% Similarity=0.336 Sum_probs=98.0
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTRMDVA-VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHL 84 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l-~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~ 84 (491)
.+++||+++++||++++||++++|+|+.+.+ +|++++|..+|++|++++||||.+||.||+||+|+||++|++|||||.
T Consensus 110 ~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~ 189 (215)
T cd07601 110 LKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQI 189 (215)
T ss_pred HHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999864444 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHH
Q 011187 85 RFFKQGYELLH-QMEPFINQVLAYAQ 109 (491)
Q Consensus 85 ~~f~~g~e~~~-~l~~~~~~l~~~l~ 109 (491)
+|||+|||++. +++||+++|+..+|
T Consensus 190 tff~qG~ell~~~~~pf~~~v~~~~q 215 (215)
T cd07601 190 AFFKMGPEMFTRQTEEFLSDINTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999997 99999999998764
No 15
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=99.89 E-value=6.3e-23 Score=191.55 Aligned_cols=103 Identities=28% Similarity=0.362 Sum_probs=98.0
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAV-VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~-E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
+++||+.+++||.+++||++++|+|++++++ |+++++..+|++|++++||||++||.||+|||++||++|++||+||++
T Consensus 111 KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~t 190 (215)
T cd07631 111 KEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQIS 190 (215)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999774 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHhhhHHHHHHHHHHHH
Q 011187 86 FFKQGYE-LLHQMEPFINQVLAYAQ 109 (491)
Q Consensus 86 ~f~~g~e-~~~~l~~~~~~l~~~l~ 109 (491)
|||+||| +.++++||+++|...+|
T Consensus 191 FFhqG~e~L~~dl~~f~~~l~~~~q 215 (215)
T cd07631 191 FFKMGSENLNEQLEEFLTNIGTSVQ 215 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcC
Confidence 9999999 66799999999998764
No 16
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.89 E-value=3.3e-23 Score=195.09 Aligned_cols=95 Identities=25% Similarity=0.425 Sum_probs=93.4
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+||+++++||++++||++++|+|+|..++|++.+|..+|++|++++||||.+|+.||+||||+||++|++||+||++|
T Consensus 113 kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tf 192 (207)
T cd07602 113 KKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTF 192 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+|||++++++|||
T Consensus 193 f~qG~el~~d~~py~ 207 (207)
T cd07602 193 YHQGHEVAKDFKPYL 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999985
No 17
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.89 E-value=3e-23 Score=196.29 Aligned_cols=94 Identities=28% Similarity=0.397 Sum_probs=92.0
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+++||+++++||++++||++++|+| |..++|++++|+++|++|+++|||||.+||.||+||+++||++|++||+||++|
T Consensus 107 kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tf 185 (200)
T cd07603 107 KKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTF 185 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++++|||
T Consensus 186 f~qG~el~~dl~py~ 200 (200)
T cd07603 186 FHQGYDLLEDLEPYM 200 (200)
T ss_pred HHhHHHHHHhhcCcC
Confidence 999999999999985
No 18
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=1.2e-22 Score=191.77 Aligned_cols=94 Identities=26% Similarity=0.397 Sum_probs=90.0
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+++||+++++||.+++|+++++ +|+|..++|++++|+++|++|+++|||||.+||.||++|+++||++|++||+||++|
T Consensus 107 rK~Fdk~se~yd~al~k~~~~k-~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tf 185 (200)
T cd07637 107 KKQFDKVREDLEIALVKNAQAP-RHKPHEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTF 185 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988766 667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++|+|||
T Consensus 186 f~qG~el~~~~~py~ 200 (200)
T cd07637 186 FQQGYSLLHELDPYM 200 (200)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999986
No 19
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=99.87 E-value=3.2e-22 Score=187.99 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=92.5
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+|||.+++||++++|++++++++++..++|++.+|..+|++|+++|||||.+|+.||.||||+||++|++||+||++|
T Consensus 113 kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tf 192 (207)
T cd07636 113 KKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTF 192 (207)
T ss_pred hhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+|||+++++.||.
T Consensus 193 fhqG~el~~d~~~y~ 207 (207)
T cd07636 193 YHHGYELAKDFSDFK 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999984
No 20
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.87 E-value=3.8e-22 Score=187.47 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=91.2
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+++||+.+++||++++||++++++|++..++|++.+|..+|++|+++|||||++||.||+||||+||++|++||+||++|
T Consensus 113 KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tf 192 (207)
T cd07635 113 KKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTF 192 (207)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999997776668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+|||++++++||.
T Consensus 193 fhqG~el~~d~~~y~ 207 (207)
T cd07635 193 YHQGYELAKDFNHYK 207 (207)
T ss_pred HHhHHHHHHhhcccC
Confidence 999999999999983
No 21
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.87 E-value=3.5e-22 Score=187.42 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=93.0
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+|||++++||++++|++++++++++..+.|++++|..+|++|++++||||.+|++||.||+|+||++|++||+||++|
T Consensus 113 kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tf 192 (207)
T cd07634 113 KKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTF 192 (207)
T ss_pred ccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++|+||.
T Consensus 193 f~qG~el~~dl~py~ 207 (207)
T cd07634 193 YHEGYELAQEFAPYK 207 (207)
T ss_pred HHhHHHHHHhhcCCC
Confidence 999999999999984
No 22
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=6.9e-22 Score=186.62 Aligned_cols=94 Identities=48% Similarity=0.769 Sum_probs=92.3
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+|||++.+||++++||++++|+++++.++|++++|..+|++|++++||||.+||.||.||+++||++|++||+||++|
T Consensus 109 kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tF 188 (202)
T cd07606 109 RRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAF 188 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHH
Q 011187 87 FKQGYELLHQMEPF 100 (491)
Q Consensus 87 f~~g~e~~~~l~~~ 100 (491)
||+||+++++|+||
T Consensus 189 F~qG~ell~~l~py 202 (202)
T cd07606 189 FKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999986
No 23
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=1.1e-21 Score=181.85 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=92.2
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+|||.+++||++++|++.+|.++++..++|++.+|..+|++|.+.|||||++||.||.||||+||++|++||+++++|
T Consensus 113 KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf 192 (207)
T cd07633 113 KKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTS 192 (207)
T ss_pred hhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++++||.
T Consensus 193 ~hqG~el~~df~~y~ 207 (207)
T cd07633 193 NNLTVELTQDFLPYK 207 (207)
T ss_pred HhhHHHHHHHhcccC
Confidence 999999999999984
No 24
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=99.86 E-value=2.2e-21 Score=179.70 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=94.2
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVV-IEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E-~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
+|.||+.+++||.+++||+.++|+|+.++..+ .+.+|..+|++|+++|||||++||.||+||||+||++|++||+|+.+
T Consensus 111 KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~T 190 (215)
T cd07632 111 KDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQIN 190 (215)
T ss_pred HHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999997777653 55689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhhHHHHHHHHHHH
Q 011187 86 FFKQGYELL-HQMEPFINQVLAYA 108 (491)
Q Consensus 86 ~f~~g~e~~-~~l~~~~~~l~~~l 108 (491)
|||+|||++ +.+++|+..+...+
T Consensus 191 FFhQGyeL~~~~~~~~~~~~~~~~ 214 (215)
T cd07632 191 FFKKGAELFSKKLDSFLSSVSDMN 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999 57999999887654
No 25
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.85 E-value=2.2e-21 Score=182.25 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=90.5
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+||+++++||.++.||++++|+| +..+.|++.+|..+|++|++++||||.+||.||+||||+||++|++||+||++|
T Consensus 107 kk~FdK~s~~~~~aL~K~~~~~k~k-~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tf 185 (200)
T cd07638 107 KKQFDKVSEEKENALVKNAQVQRNK-QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTF 185 (200)
T ss_pred HHHHHHHhHHHHHHHHHhccCCcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999777 566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++++|||
T Consensus 186 f~qG~el~~d~~py~ 200 (200)
T cd07638 186 FHQGYDLFSELGPYM 200 (200)
T ss_pred HHhHHHHHHHhcccC
Confidence 999999999999986
No 26
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.84 E-value=4.5e-21 Score=179.92 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=89.4
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+|+|||++++||++++|+++++|+| +..+.|++.+|..+|++|++++||||.+||.||.+|+|+||++|++||+||++|
T Consensus 107 kK~FdK~s~~~d~al~K~~~~~k~k-~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tf 185 (200)
T cd07639 107 RKEFERGAESLEAALQHNAETPRRK-AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASF 185 (200)
T ss_pred hhhHhhcchhHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999664 555699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
||+||+++++|+||+
T Consensus 186 F~qG~ell~~l~~y~ 200 (200)
T cd07639 186 FQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999999999985
No 27
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.80 E-value=3.8e-19 Score=150.60 Aligned_cols=95 Identities=29% Similarity=0.467 Sum_probs=74.6
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
++|+|||.|+++.. +.|+||||+|+ ++.|+||+++.+.
T Consensus 2 v~k~G~L~Kkg~~~-k~WkkRwfvL~-~~~L~yyk~~~~~---------------------------------------- 39 (100)
T cd01233 2 VSKKGYLNFPEETN-SGWTRRFVVVR-RPYLHIYRSDKDP---------------------------------------- 39 (100)
T ss_pred cceeEEEEeeCCCC-CCcEEEEEEEE-CCEEEEEccCCCc----------------------------------------
Confidence 57999999998765 89999999997 4669999987652
Q ss_pred cceeEeecCcceeecCCCCC---CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQS---DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~---~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+...|+|..+.+...++.. .+++||.|++++|+|+|+|+|++|+++||.+|+..++
T Consensus 40 ~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 40 VERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred cEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 12234556566665543221 3689999999999999999999999999999987653
No 28
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.80 E-value=3.6e-19 Score=151.49 Aligned_cols=94 Identities=21% Similarity=0.497 Sum_probs=68.7
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
|+|||.|+|+...++|+||||+|+ ++.|+||+++.+..+.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~~~~--------------------------------------- 40 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDAFAK--------------------------------------- 40 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCcCcC---------------------------------------
Confidence 589999998775689999999997 5569999987663221
Q ss_pred eeEeecCc----ceeecC-CC--CCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLT----STIKPD-AD--QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 260 ~~~i~l~~----~~v~~~-~~--~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
+.|+|.. +.|... ++ ..+..+||+|+|++|+|+|+|+|++|+++||+||+.++.
T Consensus 41 -G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 41 -GEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred -cEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 1122211 122110 11 223346999999999999999999999999999999875
No 29
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.77 E-value=1.9e-18 Score=144.87 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=72.0
Q ss_pred EEEEeecCCC-cccCceEEEEEEecC-ceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 181 QGYLSKRSSN-LRADWKRRFFVLDSR-GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 181 eGyL~Krs~~-~~k~WkrRwFvL~~~-g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
+|||.|++++ ..++|++|||||+++ +.|+||+++.+. .
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~----------------------------------------~ 41 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDA----------------------------------------K 41 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcc----------------------------------------c
Confidence 6999999864 468999999999854 579999988663 2
Q ss_pred ceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 259 ARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 259 ~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
+.+.|+|..+++...++ +++++|+|+|++|+|+|+|+|++|+++||+||+.+
T Consensus 42 p~G~I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 42 PLGRVDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred ccceEECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 33456666666554332 34789999999999999999999999999999875
No 30
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=3.1e-18 Score=143.94 Aligned_cols=93 Identities=22% Similarity=0.436 Sum_probs=68.5
Q ss_pred EEEEEeecCCC--cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 180 KQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 180 keGyL~Krs~~--~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
.+|||.|+++. ..|+|+||||+|+++ .|+||++.....+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~-~L~y~K~~~~~~~-------------------------------------- 42 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGA-QLLFQKGKSKDDP-------------------------------------- 42 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCC-EEEEEeccCccCC--------------------------------------
Confidence 48999999884 669999999999854 4788887644211
Q ss_pred cceeEeecCcc-eeecCCCCC---CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTS-TIKPDADQS---DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 258 ~~~~~i~l~~~-~v~~~~~~~---~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+.|+|..| +|+...+.. +++|||+|.||+|+|+|+|+|++|+++||++|+.|
T Consensus 43 -~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 43 -DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred -CCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 1123444433 344432211 34699999999999999999999999999999876
No 31
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=99.75 E-value=6.6e-18 Score=157.24 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=93.0
Q ss_pred cchhhhhhhHHHHHHHHHHhccCC--CCCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRK--STRMDVAV------VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVG 77 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk--~k~~~~l~------E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~ 77 (491)
.+|.|||.+++||.++.|-.+.++ .|+.++.+ |++++|..+|++|++.+||||++||.+|.||++++++.|+
T Consensus 109 ~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll 188 (215)
T cd07641 109 LKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLI 188 (215)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 478999999999999999998888 56766665 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011187 78 GTMDAHLRFFKQGYELLHQMEPFINQV 104 (491)
Q Consensus 78 ~~~~a~~~~f~~g~e~~~~l~~~~~~l 104 (491)
+|||||.+|||+|++++++|+||+++|
T Consensus 189 ~~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 189 KYYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999874
No 32
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.74 E-value=7e-18 Score=161.08 Aligned_cols=99 Identities=17% Similarity=0.342 Sum_probs=88.8
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCC-------Cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKST-------RMDV-AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVG 77 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k-------~~~~-l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~ 77 (491)
.+++||++++.||.+.++..+..++. ++++ ..|++++|..+|+.|++++||||++|+.||.||+++||++|+
T Consensus 109 ~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll 188 (215)
T cd07604 109 LKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLV 188 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988877765541 2233 378899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011187 78 GTMDAHLRFFKQGYELLHQMEPFINQV 104 (491)
Q Consensus 78 ~~~~a~~~~f~~g~e~~~~l~~~~~~l 104 (491)
+||+||++|||+|++++++|+||+++|
T Consensus 189 ~~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 189 EYYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 999999999999999999999999864
No 33
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.74 E-value=9.7e-18 Score=142.13 Aligned_cols=92 Identities=24% Similarity=0.410 Sum_probs=68.6
Q ss_pred EEEEEeecCCC--------cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 180 KQGYLSKRSSN--------LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 180 keGyL~Krs~~--------~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
++|||+|...+ ..|+|+||||||+++++|+||++....
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~---------------------------------- 46 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT---------------------------------- 46 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC----------------------------------
Confidence 47999998654 368999999999988999998765310
Q ss_pred cccccccceeEeecCcceeecCC-CCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLTSTIKPDA-DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKIN 310 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~~v~~~~-~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~ 310 (491)
..+.+.|+|..|..-..+ +...+.|||+|+||+|+|+|.|+|++|+++||.+|.
T Consensus 47 -----~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 47 -----TLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -----cccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 122334555544433322 223457999999999999999999999999999986
No 34
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=99.73 E-value=1.4e-17 Score=152.76 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=91.2
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTRMD------VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGT 79 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~~~------~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~ 79 (491)
.+|.|||++++||.++.|-.+..+.+.-+ ...|++++|..+|++|+..+||||++||++|.||+++|++.|++|
T Consensus 109 ~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy 188 (213)
T cd07640 109 SKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKF 188 (213)
T ss_pred HHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHH
Confidence 46899999999999999988888776622 247899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 011187 80 MDAHLRFFKQGYELLHQMEPFINQV 104 (491)
Q Consensus 80 ~~a~~~~f~~g~e~~~~l~~~~~~l 104 (491)
||||.+|||+|++++++|.||+++|
T Consensus 189 ~hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 189 FHAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 9999999999999999999999874
No 35
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.73 E-value=2.2e-17 Score=138.53 Aligned_cols=91 Identities=27% Similarity=0.510 Sum_probs=71.3
Q ss_pred EEEEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 180 KQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 180 keGyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
++|||+|+++. ..+.|++|||||.+ +.|+||+++.+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~-~~L~yyk~~~~~--------------------------------------- 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKG-TTLYWYRSKQDE--------------------------------------- 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEEC-CEEEEECCCCCC---------------------------------------
Confidence 58999998653 34689999999985 569999987653
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
.+...|+|..++|.... +..++|||.|.+++ ++|+|+|+|++|+++||.+|++|
T Consensus 42 -~~~~~I~L~~~~v~~~~-~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 -KAEGLIFLSGFTIESAK-EVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred -ccceEEEccCCEEEEch-hcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 12234556666665532 34589999999999 99999999999999999999864
No 36
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.72 E-value=2.6e-17 Score=140.80 Aligned_cols=94 Identities=19% Similarity=0.373 Sum_probs=66.5
Q ss_pred eEEEEEeecCCC----cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 179 IKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 179 ~keGyL~Krs~~----~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
+|+|||+|++.+ .+++|++|||||+ ++.|+||+++.+..
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~~------------------------------------ 43 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEKR------------------------------------ 43 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCcccc------------------------------------
Confidence 479999999754 2359999999996 66799998875520
Q ss_pred ccccceeEeecCcce-eecCCCC------CCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTST-IKPDADQ------SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~-v~~~~~~------~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
....+.|+|..+. +....+. ..+.+||+|++++++|+|+|+|++|+++||+||+.
T Consensus 44 --~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 44 --GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred --cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 0112233333222 1111111 13579999999999999999999999999999985
No 37
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.72 E-value=5.5e-17 Score=134.84 Aligned_cols=88 Identities=27% Similarity=0.425 Sum_probs=70.1
Q ss_pred EEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccce
Q 011187 181 QGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVAR 260 (491)
Q Consensus 181 eGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~~ 260 (491)
+|||.|++.. .++|++|||||+ +|.|+||+++.+.. ....
T Consensus 2 ~G~L~K~~~~-~k~Wk~RwFvL~-~g~L~Yyk~~~~~~--------------------------------------~~~~ 41 (91)
T cd01247 2 NGVLSKWTNY-INGWQDRYFVLK-EGNLSYYKSEAEKS--------------------------------------HGCR 41 (91)
T ss_pred ceEEEEeccc-cCCCceEEEEEE-CCEEEEEecCccCc--------------------------------------CCCc
Confidence 6999999754 589999999995 78899999876521 0234
Q ss_pred eEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 261 HTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 261 ~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
+.|+|..|.+...+ .++++|+|.++. ++|+|.|+|++|+++||+||+.
T Consensus 42 G~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 42 GSIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 56777777777542 236899997766 9999999999999999999984
No 38
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.71 E-value=8.7e-17 Score=135.96 Aligned_cols=92 Identities=29% Similarity=0.514 Sum_probs=67.8
Q ss_pred EEEEeecCCCcccCceEEEEEEec-CceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 181 QGYLSKRSSNLRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 181 eGyL~Krs~~~~k~WkrRwFvL~~-~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
+|||.|++... +.|++|||+|.+ ++.|+||+++.+..+
T Consensus 2 ~G~L~K~g~~~-k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------------------------------------- 40 (101)
T cd01235 2 EGYLYKRGALL-KGWKPRWFVLDPDKHQLRYYDDFEDTAE---------------------------------------- 40 (101)
T ss_pred eEEEEEcCCCC-CCccceEEEEECCCCEEEEecCCCCCcc----------------------------------------
Confidence 79999998654 899999999986 457999998765322
Q ss_pred eeEeecCcce-eec------CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTST-IKP------DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 260 ~~~i~l~~~~-v~~------~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+.|+|..++ +.. .+....+.++|.|.++.|+|+|+|+|++|+++||.||+++|
T Consensus 41 ~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 41 KGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 1222332211 111 11223467899999999999999999999999999999875
No 39
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.71 E-value=6.9e-17 Score=134.20 Aligned_cols=93 Identities=40% Similarity=0.756 Sum_probs=71.7
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
|+|||.|+++...+.|++|||+|. ++.|+||+++.+.. ...
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~~--------------------------------------~~~ 41 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDYD--------------------------------------NAH 41 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCcccc--------------------------------------ccc
Confidence 589999997664588999999997 56688888765410 011
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
...+++..+++...++..++++||+|++++++|+|+|+|++|+++||.||++
T Consensus 42 ~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 42 VKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred ceEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 2345566666766544334789999999999999999999999999999985
No 40
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.70 E-value=1.4e-16 Score=134.52 Aligned_cols=94 Identities=22% Similarity=0.381 Sum_probs=69.6
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCc-----eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRG-----LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g-----~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
++|+|||.|+ ++|+||||||+... .|.||+++......
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------- 44 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------- 44 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence 6799999998 78999999998542 79999998653110
Q ss_pred ccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
...+...|+|..|..-....+..++|+|.|.|++++|+|+|+|++|+++||.+|..
T Consensus 45 ---~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 45 ---GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ---CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 01233455666554322222334579999999999999999999999999999863
No 41
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2.4e-16 Score=138.92 Aligned_cols=92 Identities=30% Similarity=0.656 Sum_probs=71.9
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
|+|||.|+++.. +.|++|||+|.+ +.|+||+++.+. .+
T Consensus 2 k~G~L~K~~~~~-~~WkkRwfvL~~-~~L~yyk~~~~~----------------------------------------~~ 39 (125)
T cd01252 2 REGWLLKQGGRV-KTWKRRWFILTD-NCLYYFEYTTDK----------------------------------------EP 39 (125)
T ss_pred cEEEEEEeCCCC-CCeEeEEEEEEC-CEEEEEcCCCCC----------------------------------------Cc
Confidence 789999998665 889999999975 558999887652 12
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCC---------------------eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT---------------------KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~---------------------rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
...|+|..+.|.... ...+++||+|.+++ ++|+|+|+|++|+++||.||+.+|.
T Consensus 40 ~g~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 40 RGIIPLENVSIREVE-DPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEECCCcEEEEcc-cCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 344556666665542 34678999998765 5889999999999999999998875
No 42
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.68 E-value=7.5e-18 Score=171.31 Aligned_cols=86 Identities=41% Similarity=0.820 Sum_probs=78.8
Q ss_pred cCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCC
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIG 480 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~ 480 (491)
..-++|+|||+++|.|+|+|-|+|||.+|..+||+||.|||.||+|.-. .|.++.|++...+.|..+|.|||..|-++
T Consensus 6 l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld~ 83 (669)
T KOG0818|consen 6 LSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLDP 83 (669)
T ss_pred hhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccCc
Confidence 4557999999999999999999999999999999999999999999987 89999999999999999999999999888
Q ss_pred CCCCCccc
Q 011187 481 NNSLTDER 488 (491)
Q Consensus 481 ~~~~~~~~ 488 (491)
.....+.|
T Consensus 84 st~~sg~r 91 (669)
T KOG0818|consen 84 ATIMSGRR 91 (669)
T ss_pred hhhhcccC
Confidence 66555443
No 43
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=99.67 E-value=2.6e-16 Score=147.55 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=90.0
Q ss_pred cchhhhhhhHHHHHHHHHHhccCC--CCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRK--STRMDVA------VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVG 77 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk--~k~~~~l------~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~ 77 (491)
.++.||+.++.||.++.|-.+.++ .|..+.+ .|++++|..+|++|+..+||||++||.||.+++++||+.++
T Consensus 109 ~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~ 188 (215)
T cd07642 109 LKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLI 188 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999999999998777666 4555544 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 011187 78 GTMDAHLRFFKQGYELLHQMEPFINQV 104 (491)
Q Consensus 78 ~~~~a~~~~f~~g~e~~~~l~~~~~~l 104 (491)
.||+||.+|||+|++++++|+|||++|
T Consensus 189 ~~~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 189 KYFHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999874
No 44
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.67 E-value=2e-16 Score=132.48 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=70.5
Q ss_pred EEEEeecCCCcccCceEEEEEEec---CceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 181 QGYLSKRSSNLRADWKRRFFVLDS---RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 181 eGyL~Krs~~~~k~WkrRwFvL~~---~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
.|||.|++++..|.|++|||+|.+ ++.|+||+++.+..|
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p-------------------------------------- 43 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKP-------------------------------------- 43 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCc--------------------------------------
Confidence 599999988746999999999973 577999998876322
Q ss_pred cceeEeecCcceeecCCCC-CCCcceEEEEeCCe--EEEEEeCCHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQ-SDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~-~~r~fcF~I~t~~r--t~~lqAeSe~e~~~WI~ai~~ 311 (491)
.+.+++..+.|++..+. .+++|||+|+++.+ +|+++|++ +|+++||++|+.
T Consensus 44 --~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 44 --IGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred --cceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 12344555667664332 37899999999986 89999999 999999999975
No 45
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.67 E-value=5.5e-16 Score=133.12 Aligned_cols=92 Identities=24% Similarity=0.447 Sum_probs=66.5
Q ss_pred EEEEeecCCC---cccCceEEEEEEecCce------EEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 181 QGYLSKRSSN---LRADWKRRFFVLDSRGL------LYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 181 eGyL~Krs~~---~~k~WkrRwFvL~~~g~------L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
+|||.|+++. ..+.|+||||||.++++ |+||+++.+..
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k--------------------------------- 48 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK--------------------------------- 48 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------------------------------
Confidence 7999999764 24699999999987765 79999876531
Q ss_pred cccccccceeEeecCcceeecC-----CCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLTSTIKPD-----ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~~v~~~-----~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
+.+.|+|..+.+... .......|.|.|.++.|+|+|+|+|++||++||.+|+..
T Consensus 49 -------~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 49 -------LEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred -------cceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 223344443332211 111234578999999999999999999999999999753
No 46
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.64 E-value=1.7e-15 Score=124.95 Aligned_cols=90 Identities=31% Similarity=0.563 Sum_probs=70.0
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
++|||+|+++.. +.|++|||+|. ++.|+||+++.+.. ..+
T Consensus 1 ~~G~L~k~~~~~-~~W~~r~~vl~-~~~L~~~~~~~~~~--------------------------------------~~~ 40 (91)
T cd01246 1 VEGWLLKWTNYL-KGWQKRWFVLD-NGLLSYYKNKSSMR--------------------------------------GKP 40 (91)
T ss_pred CeEEEEEecccC-CCceeeEEEEE-CCEEEEEecCccCC--------------------------------------CCc
Confidence 489999997655 88999999997 66789999876520 022
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
...+++..+.+... ..++++|.|.+++ ++|+|+|+|++|+.+||.||+.|
T Consensus 41 ~~~i~l~~~~~~~~---~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 41 RGTILLSGAVISED---DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred eEEEEeceEEEEEC---CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 34455666666553 2347999999998 99999999999999999999864
No 47
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=7e-16 Score=129.03 Aligned_cols=94 Identities=26% Similarity=0.487 Sum_probs=69.7
Q ss_pred EEEEEeecCCC-cccCceEEEEEEec-CceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccccc-----CCCc
Q 011187 180 KQGYLSKRSSN-LRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY-----HGGV 252 (491)
Q Consensus 180 keGyL~Krs~~-~~k~WkrRwFvL~~-~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~-----~~~v 252 (491)
|+||||.+.++ ++.+|.|.||..+. +++|.+ ++-++. .|.+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m--------------------------------~~~~q~s~~~~~g~v 48 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTM--------------------------------VPFNQKTKTDMKGAV 48 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEE--------------------------------EecccccccccCccc
Confidence 58999988765 45689999999875 344322 222221 2222
Q ss_pred ccccccceeEeecCcceeecCCCCCCCcceEEEEeCCe--EEEEEeCCHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK--VYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~r--t~~lqAeSe~e~~~WI~ai~~ 311 (491)
...+.+.|..|++++. +..+|||||+|+++++ +++|||+|+.++.+||+||+.
T Consensus 49 -----~~~e~~~l~sc~~r~~-~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 49 -----AQDETLTLKSCSRRKT-ESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred -----ccceEEeeeecccccc-CCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 2335577888999985 6789999999999987 899999999999999999864
No 48
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.61 E-value=4.8e-15 Score=125.94 Aligned_cols=95 Identities=21% Similarity=0.397 Sum_probs=62.5
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCC-CCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWS-WNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~-~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
++|+|||.|++... +.|++|||+|++++.|+||++... ...+.
T Consensus 1 v~k~G~L~K~g~~~-~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~----------------------------------- 44 (102)
T cd01241 1 VVKEGWLHKRGEYI-KTWRPRYFLLKSDGSFIGYKEKPEDGDPFL----------------------------------- 44 (102)
T ss_pred CcEEEEEEeecCCC-CCCeeEEEEEeCCCeEEEEecCCCccCccc-----------------------------------
Confidence 36999999997654 899999999986776766665433 11000
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEE------eCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRII------SPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~------t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.....+.+..|.+... +..++++|.|. ++.| +|+|+|++|+++||.||+.++
T Consensus 45 -i~l~~~~v~~~~~~~~--~~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 45 -PPLNNFSVAECQLMKT--ERPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred -cccCCeEEeeeeeeec--cCCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 0111122333444322 23567899998 2345 457999999999999998763
No 49
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.60 E-value=4.8e-15 Score=124.50 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred EEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 182 GYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 182 GyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
|.|.||+.. ..++|++|||+|+ +..|+||+++...+.
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~~--------------------------------------- 44 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKKS--------------------------------------- 44 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCcee---------------------------------------
Confidence 445566532 3478999999997 455999987754321
Q ss_pred ceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 259 ARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 259 ~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
+...+.-..+..........+.|+|+|++++++|+|||+|+.|+++||.||+.
T Consensus 45 g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 45 ALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred eeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 11111122233333222334579999999999999999999999999999975
No 50
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.58 E-value=3.3e-14 Score=118.68 Aligned_cols=97 Identities=33% Similarity=0.664 Sum_probs=75.2
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
++++|||.+++ ...+.|++|||+|.+ +.|+||+++.+.. ..
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~~-~~L~~~~~~~~~~-------------------------------------~~ 41 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLRD-SYLLYYKSSKDKS-------------------------------------DS 41 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEET-TEEEEESSTTTTT-------------------------------------ES
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEEC-CEEEEEecCcccc-------------------------------------ce
Confidence 46899999997 445889999999986 5588888776310 01
Q ss_pred cceeEeecCcceeecCCCC-----CCCcceEEEEeCCe-EEEEEeCCHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQ-----SDLRFCFRIISPTK-VYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~-----~~r~fcF~I~t~~r-t~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...+++..+.|....+. ...++||.|.++++ +|+|+|+|++++..||.+|+.++
T Consensus 42 ~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 42 KPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 2345566777776654333 46799999999996 99999999999999999999886
No 51
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.56 E-value=9.7e-15 Score=139.21 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=85.1
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+++||++|++||.+++||++++|+|+|+.++|++++|+++|++|+++|||||++|+.||.....-|++.+...|......
T Consensus 109 rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLDyv~qi~~lq~~lDkllv~~~~~~wr~~~~~ 188 (214)
T cd07609 109 RKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLDLVIAIPQLRLTLDKLLVDIITDLWREKKRT 188 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999988776665
Q ss_pred HHHHHHHHh-hhHHHHHHHHH
Q 011187 87 FKQGYELLH-QMEPFINQVLA 106 (491)
Q Consensus 87 f~~g~e~~~-~l~~~~~~l~~ 106 (491)
+......+. ....+|+.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~ri~~ 209 (214)
T cd07609 189 HDDSGSKFDPKWGEEMERIRG 209 (214)
T ss_pred CccccccccHHHHHHHHHHHH
Confidence 555544443 33444444433
No 52
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.54 E-value=7.7e-14 Score=118.32 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=74.0
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
.+|+|||.|.+... +.|+.|||+|.++ .|.|++..... + ...-
T Consensus 2 ~ikeG~L~K~~~~~-~~~k~RyffLFnd-~Ll~~~~~~~~---~--------------------------------~~~y 44 (101)
T cd01219 2 LLKEGSVLKISSTT-EKTEERYLFLFND-LLLYCVPRKMI---G--------------------------------GSKF 44 (101)
T ss_pred cccceEEEEEecCC-CCceeEEEEEeCC-EEEEEEccccc---C--------------------------------CCcE
Confidence 47899999997665 6899999999988 45555532110 0 0001
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.....+++..+.|... ++...+|+|.|.+++++|+|+|+|++|+++||+||+.+|.
T Consensus 45 ~~~~~i~l~~~~v~~~-~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 45 KVRARIDVSGMQVCEG-DNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEEecccEEEEeC-CCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 2345566766777643 3456799999999999999999999999999999999985
No 53
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.52 E-value=9.4e-14 Score=119.97 Aligned_cols=108 Identities=27% Similarity=0.496 Sum_probs=55.8
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
|+|||+|++....+.|++|||+|..++.|.||+.+.+...... ........+. .+
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i---------------------~~~~~~~~~~----~~ 55 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRI---------------------IGEESSRVIR----KG 55 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------------------------TT-SB-----SE
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccc---------------------cccchhceEe----ec
Confidence 6899999988767999999999976888999999544211000 0000000000 00
Q ss_pred eeEeecCcceeec----CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKP----DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 260 ~~~i~l~~~~v~~----~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
...+......+.. .+........|.|.||.|+|+|.|++.+|+.+||+||+.|
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 56 DWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEE---GGGT-EEEES-T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccCcccccccccccccCCcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 0000000000000 1112223567999999999999999999999999999875
No 54
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.52 E-value=9.7e-14 Score=113.57 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=71.7
Q ss_pred EEEeecCCCcccCceEEEEEEe-cCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccce
Q 011187 182 GYLSKRSSNLRADWKRRFFVLD-SRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVAR 260 (491)
Q Consensus 182 GyL~Krs~~~~k~WkrRwFvL~-~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~~ 260 (491)
|||.|+..+..++|+||||+|+ .+|.|.||.++.+. ...
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~----------------------------------------~~r 40 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSG----------------------------------------KLR 40 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCC----------------------------------------eeE
Confidence 8999887777799999999995 68999999987651 224
Q ss_pred eEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 261 HTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 261 ~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
+.|++..+.+..+. +..+|+|.+...+|+|.|.|++|.+.||.||+.|
T Consensus 41 Gsi~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 41 GSIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEccceEEEecC----CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 55667777776642 3568999999999999999999999999999875
No 55
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.3e-14 Score=134.62 Aligned_cols=96 Identities=26% Similarity=0.546 Sum_probs=73.7
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+.++|||+|.+++..++||||||+|.++ +||||.-..+..|.|
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLtdN-CLYYFe~tTDKEPrG----------------------------------- 302 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILTDN-CLYYFEYTTDKEPRG----------------------------------- 302 (395)
T ss_pred CccccceeeeecCCcccchhheeEEeecc-eeeeeeeccCCCCCc-----------------------------------
Confidence 46789999999987779999999999755 599998776654322
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC----------------------eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT----------------------KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~----------------------rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.|.|..-.|+.. ++..++|||+|..|+ -+|.++|.+.+|+++||.+|+.+|+
T Consensus 303 -----IIpLeNlsir~V-edP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 303 -----IIPLENLSIREV-EDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred -----ceeccccceeec-cCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 223333344432 456789999998753 1689999999999999999998885
No 56
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.46 E-value=9.6e-13 Score=110.95 Aligned_cols=97 Identities=25% Similarity=0.308 Sum_probs=71.4
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
.++||+|.|.+++ +.|. |||+|-+|-+||+.+...+.. .-
T Consensus 2 ~ikEG~L~K~~~k--~~~~-R~~FLFnD~LlY~~~~~~~~~-------------------------------------~y 41 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQ-RMFFLFSDLLLYTSKSPTDQN-------------------------------------SF 41 (99)
T ss_pred eeeEEEEEEEeCC--CCce-EEEEEccceEEEEEeecCCCc-------------------------------------eE
Confidence 5799999998754 3455 566666788777765543210 00
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.....++|..+.|+...++.+.+|||+|.++.++|+|+|.|++|+++||.+|+.+|.
T Consensus 42 ~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 42 RILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 234566777777765433345689999999999999999999999999999999985
No 57
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=1.7e-12 Score=110.51 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=64.7
Q ss_pred EEEEe-ecC-----CC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 181 QGYLS-KRS-----SN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 181 eGyL~-Krs-----~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
+|||. |+. ++ ..+.|++|||+|.+ +.|+||+++.....
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~-~~L~~ykd~~~~~~---------------------------------- 46 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCG-QSLSFYKDEKMAAE---------------------------------- 46 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeC-CEEEEEecCccccc----------------------------------
Confidence 67776 331 11 35789999999975 55888887654200
Q ss_pred cccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
...+...|++..+.+....+...++++|.|.+++ ++|+|||+|++++.+||.+|++
T Consensus 47 --~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 47 --NVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred --CCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 0001113445455665544445678999998766 8999999999999999999975
No 58
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=2.7e-12 Score=111.80 Aligned_cols=95 Identities=19% Similarity=0.346 Sum_probs=66.6
Q ss_pred EEEEEee-cCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 180 KQGYLSK-RSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 180 keGyL~K-rs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
-.|||.. +..+..++|+||||+|. .+.|+||+.+.+.. ...
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~~-------------------------------------~~~ 44 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDEK-------------------------------------RKG 44 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCccc-------------------------------------cCC
Confidence 4699984 54455699999999997 67799998876621 012
Q ss_pred ceeEeecCcceeecC----CCCCCCcceEEEEeC--C-----------------eE-EEEEeCCHHHHHHHHHHHHHH
Q 011187 259 ARHTVNLLTSTIKPD----ADQSDLRFCFRIISP--T-----------------KV-YTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 259 ~~~~i~l~~~~v~~~----~~~~~r~fcF~I~t~--~-----------------rt-~~lqAeSe~e~~~WI~ai~~a 312 (491)
+...|+|..|.+... .+.-.|++.|.|... . ++ ++|.|+|.+|+++||.||+.+
T Consensus 45 Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 45 PTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 344566666555332 134568899999642 1 23 679999999999999999853
No 59
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=5.6e-12 Score=106.04 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=66.6
Q ss_pred ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccceeEeecCcceee
Q 011187 192 RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIK 271 (491)
Q Consensus 192 ~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~~~~i~l~~~~v~ 271 (491)
.++||||||+|. ++.|+||+++.+.. ..+...+++..|.|.
T Consensus 17 ~K~~KrrwF~lk-~~~L~YyK~kee~~--------------------------------------~~p~i~lnl~gcev~ 57 (106)
T cd01237 17 LKGYKQYWFTFR-DTSISYYKSKEDSN--------------------------------------GAPIGQLNLKGCEVT 57 (106)
T ss_pred hhhheeEEEEEe-CCEEEEEccchhcC--------------------------------------CCCeEEEecCceEEc
Confidence 478999999997 67799998876521 134567788899988
Q ss_pred cCCCCCCCcceEEEEeCC----eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 272 PDADQSDLRFCFRIISPT----KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 272 ~~~~~~~r~fcF~I~t~~----rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
++..-..+.|+|.+.+|. ++|+|.|+||+++..||+|++-|
T Consensus 58 ~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 58 PDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred ccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 753334567999999987 99999999999999999999865
No 60
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=8.1e-12 Score=109.41 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 277 SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 277 ~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+++.|.|.+++|+|.|.|+|+.++++||++|+.|
T Consensus 86 ~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 86 TGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 466899999999999999999999999999999864
No 61
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=1.1e-11 Score=107.34 Aligned_cols=102 Identities=20% Similarity=0.365 Sum_probs=73.2
Q ss_pred EEEEEeec------CCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCC
Q 011187 180 KQGYLSKR------SSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (491)
Q Consensus 180 keGyL~Kr------s~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~ 250 (491)
|+|+|..+ +++ .++.|+++||||.+ +.|+.|+++..... +
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g-~~L~~yKDe~~~~~------------------~------------ 50 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRG-LVLYLQKDEHKPGK------------------S------------ 50 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEEC-CEEEEEccCccccc------------------c------------
Confidence 57888733 111 24789999999975 55888888754210 0
Q ss_pred CcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 251 ~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
+.. ......|.+..+...+..+...|++.|.|.+++ +.|+|||.+++||+.||.+|+.+.+.
T Consensus 51 -~~~--~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 51 -LSE--TELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred -ccc--ccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 000 011234556666656666778899999999997 89999999999999999999988754
No 62
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.30 E-value=4.9e-11 Score=97.88 Aligned_cols=97 Identities=29% Similarity=0.600 Sum_probs=71.6
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
+++|||.++.......|++|||+|.+ +.|.||++.....+ ..
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~~-------------------------------------~~ 43 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKKD-------------------------------------YK 43 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCcccc-------------------------------------CC
Confidence 57999999876344789999999986 55777777644210 12
Q ss_pred ceeEeecCcceeecCCCCC--CCcceEEEEeCCe-EEEEEeCCHHHHHHHHHHHHHHH
Q 011187 259 ARHTVNLLTSTIKPDADQS--DLRFCFRIISPTK-VYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 259 ~~~~i~l~~~~v~~~~~~~--~r~fcF~I~t~~r-t~~lqAeSe~e~~~WI~ai~~ai 313 (491)
....+++..+.+....+.. ...++|.|.++++ +|+|+|+|++|+..|+.+|+.++
T Consensus 44 ~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 44 PKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 2344556666665543321 4689999999997 99999999999999999999875
No 63
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.15 E-value=1.8e-10 Score=93.56 Aligned_cols=94 Identities=36% Similarity=0.667 Sum_probs=67.2
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
++|||.++.......|++|||+|.++. |++|+...... ...+
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~-l~~~~~~~~~~-------------------------------------~~~~ 42 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDL-LLYYKKKSSKK-------------------------------------SYKP 42 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCE-EEEEECCCCCc-------------------------------------CCCC
Confidence 379999875443367999999998666 55555543310 0122
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
...+++..+.+....+..+.+++|.|.+.. +.|+|+|+|++|+..|+.+|+.
T Consensus 43 ~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 43 KGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 344556666666554333468999999988 9999999999999999999975
No 64
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.09 E-value=1.8e-09 Score=91.67 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=72.9
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEec-CCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRK-PWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~-~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+++|-|.|.. ++.-+.|||+|-+|-++| -+. .... .
T Consensus 4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY-~~~~~~~~--------------------------------------~ 41 (104)
T cd01218 4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVY-GNIVISKK--------------------------------------K 41 (104)
T ss_pred EEecCcEEEee---cCCCceEEEEEecCEEEE-EEeecCCc--------------------------------------e
Confidence 67899999986 356788999999886555 211 0000 0
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
-.....++|..+.|....+..+-+++|.|.++.++|+++|+|++|+.+||++|+.||..++.
T Consensus 42 ~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 42 YNKQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred eeEeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 01234456666666544444456899999999999999999999999999999999998764
No 65
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.08 E-value=6.9e-10 Score=96.95 Aligned_cols=106 Identities=25% Similarity=0.440 Sum_probs=62.9
Q ss_pred EEEEEeec------CCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCC
Q 011187 180 KQGYLSKR------SSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (491)
Q Consensus 180 keGyL~Kr------s~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~ 250 (491)
|+|||..+ +++ ..+.|+..|+||+ .+.|+.|++......+ ... ...
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~--~~~----------------------~~~ 56 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASS--TPP----------------------DIQ 56 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT---BS-------------------------
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccC--Ccc----------------------ccc
Confidence 78999743 111 3578999999997 4668888884321000 000 000
Q ss_pred CcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 251 ~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
.+ ....+...|+|..+...+..+...|+|+|.|.+++ ..|+|||.|++||.+||.+|+-+
T Consensus 57 ~~--~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 57 SV--ENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp SS----E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred cc--ccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 00 01122345667777766666777899999999986 79999999999999999999865
No 66
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.07 E-value=1.5e-09 Score=88.73 Aligned_cols=92 Identities=29% Similarity=0.549 Sum_probs=63.8
Q ss_pred EEEEeecCCCc---ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 181 QGYLSKRSSNL---RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 181 eGyL~Krs~~~---~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
+|||.+++... ...|++|||+|.++. |+||+.+.+....
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~-l~~~~~~~~~~~~------------------------------------- 43 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDG-LLLYKSDDKKEIK------------------------------------- 43 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCE-EEEEEcCCCCcCC-------------------------------------
Confidence 68999886654 478999999998655 7777766542100
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeC---CeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISP---TKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~---~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
. ..+.+....+....+..+.+++|.|+.. .+.++|+|+|++|++.|+.+|+.+
T Consensus 44 ~--~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 44 P--GSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred C--CEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 0 1122322223333222246899999998 689999999999999999999853
No 67
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=99.07 E-value=8.9e-10 Score=115.38 Aligned_cols=229 Identities=18% Similarity=0.203 Sum_probs=139.1
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTR--MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFEL-LEAVGGTMDA 82 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~--~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~-le~l~~~~~a 82 (491)
|-|-|-.|.+.||.+++-+..+..+.+ -+++.|.+.+=.--+...++.++ -.||.--++++ |+..+.++..
T Consensus 144 FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMi------ePVQRIPRYeLLLk~yl~~lp~ 217 (623)
T KOG4424|consen 144 FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMI------EPVQRVPRYELLLQDYLLYLPP 217 (623)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhhee------chhhhhhHHHHHHHHHHHhCCC
Confidence 345677888999999999998876644 34555554443323333444443 45566667776 5677777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchH
Q 011187 83 HLRFFKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNK 162 (491)
Q Consensus 83 ~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~ 162 (491)
..--|......++-+.......++-+.+. ..+.+.++.-...-..+....|
T Consensus 218 ~d~D~~d~~ksLe~I~~aA~HsNaai~k~---------------E~~~kLlevqe~LG~e~dIV~P-------------- 268 (623)
T KOG4424|consen 218 DDPDYKDLKKSLELISTAASHSNAAITKM---------------ERLQKLLEVQEQLGNEEDIVSP-------------- 268 (623)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCCCccccCc--------------
Confidence 77677777666666444444444333222 1111222211111111122222
Q ss_pred HHHHHHhhhccCCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccc
Q 011187 163 LIEAAMQSAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSR 242 (491)
Q Consensus 163 ~~~~~~~~~~~~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 242 (491)
....+|+|-|+|.+.+ ..+-..||++|.++-+||. +... ..++
T Consensus 269 ------------sreLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc-~~r~-~~~~---------------------- 311 (623)
T KOG4424|consen 269 ------------SRELIKEGQLQKISAK-NGTTQERYLFLFNDILLYC-KPRK-RLPG---------------------- 311 (623)
T ss_pred ------------HHHHhhccceeeeecc-CCCcceeEEEEehhHHHhh-hhhh-hccc----------------------
Confidence 2347899999999877 3678999999987765553 2222 1110
Q ss_pred ccccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 243 WLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 243 ~~~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+-.....+.+..+.+... +....++.|.|..+.|...|||-|+++..+||++|+.+|..+.+.
T Consensus 312 ------------~k~~~r~~~s~~~~~v~~~-~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 312 ------------SKYEVRARCSISHMQVQED-DNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred ------------ceeccceeeccCcchhccc-ccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 0001122233444444432 344678999999999999999999999999999999999877654
No 68
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-10 Score=119.26 Aligned_cols=97 Identities=24% Similarity=0.540 Sum_probs=88.8
Q ss_pred CccHHHHHHcccCCCcccCCCCCCC-CceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHH
Q 011187 390 NEKPIDLLRRVYGNNKCADCGASEP-DWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIY 468 (491)
Q Consensus 390 ~~~~~~~l~~~~~N~~C~dCg~~~p-~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~ 468 (491)
-|+.++.|.++|+|++|++|....+ +|+++.-|-|+|..|+|.-|.| .--++|||+.|- .++..++..++.+||..
T Consensus 12 ~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l-~~ahRvksiSmt--tft~qevs~lQshgNq~ 88 (524)
T KOG0702|consen 12 YEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGL-NPAHRVKSISMT--TFTDQEVSFLQSHGNQV 88 (524)
T ss_pred HHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccC-CCccccceeeee--eccccchHHHhhcchhh
Confidence 3889999999999999999999888 9999999999999999999998 457899999998 68999999999999999
Q ss_pred HHHHHhcccCCCCCCCCcccC
Q 011187 469 ANSVWEELLRIGNNSLTDERH 489 (491)
Q Consensus 469 ~n~~~e~~~~~~~~~~~~~~~ 489 (491)
+.+||....+......||.|+
T Consensus 89 ~k~i~fkl~D~q~S~vPD~rn 109 (524)
T KOG0702|consen 89 CKEIWFKLFDFQRSNVPDSRN 109 (524)
T ss_pred hhhhhhcchhhhhccCCCccc
Confidence 999999888877777777765
No 69
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.95 E-value=5.5e-09 Score=85.64 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=65.5
Q ss_pred eeEEEEEeecCCCc-ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 178 TIKQGYLSKRSSNL-RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 178 ~~keGyL~Krs~~~-~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
+++.|||......+ +..=|+|||||+.+ .||||++..+..+.
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~-~L~wykd~eeKE~k------------------------------------ 43 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSE-SLSWYKDDEEKEKK------------------------------------ 43 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecc-eeeeeccccccccc------------------------------------
Confidence 36789998776554 44579999999755 59999988775331
Q ss_pred ccceeEeecCcceeecCCC-CCCCcceEEEEeCC--------eEEEEEeCCHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDAD-QSDLRFCFRIISPT--------KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~-~~~r~fcF~I~t~~--------rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
..|+|....++...+ -..++|||+|..|+ +++.|.|+|.+|.+.|...+-.
T Consensus 44 ----yilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 44 ----YMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred ----ceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHh
Confidence 123333334443211 24678999999876 4889999999999999977643
No 70
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.86 E-value=4.9e-09 Score=103.77 Aligned_cols=105 Identities=22% Similarity=0.327 Sum_probs=71.5
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...++|+|||+|||... ++|+.|||+|.++|.|.=|+.+.....
T Consensus 12 ~~~vvkEgWlhKrGE~I-knWRpRYF~l~~DG~~~Gyr~kP~~~~----------------------------------- 55 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEHI-KNWRPRYFLLFNDGTLLGYRSKPKEVQ----------------------------------- 55 (516)
T ss_pred hhhhHHhhhHhhcchhh-hcccceEEEEeeCCceEeeccCCccCC-----------------------------------
Confidence 35688999999998776 899999999999998777766533210
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCCe----EEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK----VYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~r----t~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
..+.+.....+..|.+-. -+..|++.|-|..-+- .-+|.++|.+++++|+.|||.+...+.
T Consensus 56 ~~p~pLNnF~v~~cq~m~--~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~ 120 (516)
T KOG0690|consen 56 PTPEPLNNFMVRDCQTMK--TERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLK 120 (516)
T ss_pred CCcccccchhhhhhhhhh--ccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence 000111111223333322 2346789999987762 357899999999999999997765443
No 71
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.81 E-value=1.2e-08 Score=86.11 Aligned_cols=100 Identities=25% Similarity=0.369 Sum_probs=59.0
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
.+|+|+.+..+ +++|||+||+|+..| |||..+.....+........+ +...+-
T Consensus 2 ~~g~LylK~~g-kKsWKk~~f~LR~SG-LYy~~Kgksk~srdL~cl~~f-------------------------~~~nvY 54 (114)
T cd01259 2 MEGPLYLKADG-KKSWKKYYFVLRSSG-LYYFPKEKTKNTRDLACLNLL-------------------------HGHNVY 54 (114)
T ss_pred ccceEEEccCC-CccceEEEEEEeCCe-eEEccCCCcCCHHHHHHHHhc-------------------------ccCcEE
Confidence 48999988543 489999999999999 666554433221110000000 000000
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCC------e-EEEEEeCCHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT------K-VYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~------r-t~~lqAeSe~e~~~WI~ai~~ai 313 (491)
......-+. .....|||.|..+. + .-+||||+++.+..||.||+-+.
T Consensus 55 ----~~~~~kKk~---kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 55 ----TGLGWRKKY---KSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ----EEechhhcc---CCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 000111111 12337899997654 1 46899999999999999998654
No 72
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.81 E-value=7.6e-09 Score=85.54 Aligned_cols=94 Identities=19% Similarity=0.328 Sum_probs=63.0
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCce----EEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGL----LYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~----L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
.++|||+|.|+...|.|+||||+|.+=.. +.-|+.+..
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-------------------------------------- 44 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-------------------------------------- 44 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC--------------------------------------
Confidence 37999999998777999999999973110 111122211
Q ss_pred ccccceeEeecCcceeecCCC----------CCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDAD----------QSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~----------~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+.+.+.|.+-+|..... -..-+|-|..+-.+-++.|..++|.|+..||+||-.|.
T Consensus 45 ---~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 45 ---EPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred ---CchhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 222333344444433211 11347889999888999999999999999999997764
No 73
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.80 E-value=2e-09 Score=117.54 Aligned_cols=103 Identities=29% Similarity=0.429 Sum_probs=73.4
Q ss_pred ccCCcceeEEEEEeecCCCcccCceEEEEEEecCc-eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCC
Q 011187 172 VKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRG-LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (491)
Q Consensus 172 ~~~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g-~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~ 250 (491)
++.....+-+|||+|||... |.|+.|||||+.+. .|+||.+..+..|.|..
T Consensus 1628 s~~teNr~~eG~LyKrGA~l-K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~I--------------------------- 1679 (1732)
T KOG1090|consen 1628 SPPTENRIPEGYLYKRGAKL-KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCI--------------------------- 1679 (1732)
T ss_pred CCcccccCcccchhhcchhh-cccccceeEecCCccceeeecccccccccchh---------------------------
Confidence 34444456699999998776 89999999998644 59999887764321110
Q ss_pred CcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 251 GVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 251 ~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
|...+ ..+.+ ..+...+++--|+|.|..|+|.|+|.+....++|++.||+++
T Consensus 1680 ---dLaev--esv~~------~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1680 ---DLAEV--ESVAL------IGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ---hhhhh--hhhcc------cCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 11000 11111 223455667779999999999999999999999999999886
No 74
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.75 E-value=5.1e-08 Score=90.47 Aligned_cols=93 Identities=27% Similarity=0.356 Sum_probs=87.6
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKST-RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k-~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
.++|++.+.+||.+++++.++.+++ .+..+.+.+.++..+|..|...+.+|+..|+.+...+..++.+.|..|+.+|..
T Consensus 100 ~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~ 179 (194)
T cd07307 100 RKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSE 179 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998876 678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHH
Q 011187 86 FFKQGYELLHQMEP 99 (491)
Q Consensus 86 ~f~~g~e~~~~l~~ 99 (491)
||+.+++.++++.|
T Consensus 180 ~~~~~~~~~~~l~~ 193 (194)
T cd07307 180 FFKEVLKILEQLLP 193 (194)
T ss_pred HHHhHHHHHHhhcC
Confidence 99999999887765
No 75
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.72 E-value=1.7e-07 Score=80.51 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=70.4
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|-|.|-+... +.++.|+|+|-++-++| -+....... .++..| + .
T Consensus 3 elI~EG~L~ki~~~~-~~~q~R~~FLFd~~Li~-CK~~~~~~~-----------~~g~~~-~-----------------~ 51 (112)
T cd01261 3 EFIMEGTLTRVGPSK-KAKHERHVFLFDGLMVL-CKSNHGQPR-----------LPGASS-A-----------------E 51 (112)
T ss_pred cccccCcEEEEeccc-CCcceEEEEEecCeEEE-EEeccCccc-----------cccccc-c-----------------e
Confidence 357899999886544 67899999998666444 443222110 000000 0 0
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
-.....+++....|.-.++..+-++.|.|++. .++|.|+|.|++|..+||++|..+|.
T Consensus 52 y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 52 YRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 12234455555555544454456899999985 68999999999999999999998874
No 76
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.52 E-value=1.7e-06 Score=73.43 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=61.7
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|++.|+.+-. +++|||+|++...|+|+......
T Consensus 11 e~Il~~g~v~K~kgl~---~kkR~liLTd~PrL~Yvdp~~~~-------------------------------------- 49 (104)
T PF14593_consen 11 ELILKQGYVKKRKGLF---AKKRQLILTDGPRLFYVDPKKMV-------------------------------------- 49 (104)
T ss_dssp --EEEEEEEEEEETTE---EEEEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred CeEEEEEEEEEeeceE---EEEEEEEEccCCEEEEEECCCCe--------------------------------------
Confidence 4689999999995433 89999999987788888766442
Q ss_pred cccceeEeecCc-ceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLT-STIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~-~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
..+.|.+.. ..+... ..-.|.|.||+|+|+|... +.+...|+++|+.++...
T Consensus 50 ---~KGeI~~~~~l~v~~k-----~~~~F~I~tp~RtY~l~d~-~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 50 ---LKGEIPWSKELSVEVK-----SFKTFFIHTPKRTYYLEDP-EGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp ---EEEEE--STT-EEEEC-----SSSEEEEEETTEEEEEE-T-TS-HHHHHHHHHHHHHHH
T ss_pred ---ECcEEecCCceEEEEc-----cCCEEEEECCCcEEEEECC-CCCHHHHHHHHHHHHHHh
Confidence 112333331 123321 1337999999999999985 457888999999988654
No 77
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.47 E-value=2e-06 Score=73.71 Aligned_cols=108 Identities=18% Similarity=0.336 Sum_probs=62.4
Q ss_pred eEEEEEeecCC-CcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 179 IKQGYLSKRSS-NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 179 ~keGyL~Krs~-~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
..||||.-... +.++.|+|+|.||.+.. |+.|..+.+... . +.+ .+ ..+.|...
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~K-l~lYd~e~~k~~---~--------p~~----~~---------~~vLdlrD 57 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFK-LFLYDIAEDRAS---Q--------PSV----VI---------SQVLDMRD 57 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCE-EEEEeCCccccC---C--------ccC----ce---------eEEEEcCC
Confidence 36899984333 44579999999998766 555555443210 0 000 00 00001100
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCC-------eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPT-------KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-------rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
...+.-.+..+.+. .++..+.++-|+|.+.. .+.+|-|+|+.|.+.|+.||+.-
T Consensus 58 ~~fsV~~VtasDvi-~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 58 PEFSVSSVLESDVI-HASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CCEEEEEecHHHcc-ccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 00011111122222 24556889999999733 68899999999999999999753
No 78
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.47 E-value=2.5e-06 Score=72.13 Aligned_cols=104 Identities=22% Similarity=0.404 Sum_probs=63.7
Q ss_pred EEEEEeecCC-Cc--ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 180 KQGYLSKRSS-NL--RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 180 keGyL~Krs~-~~--~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.||||.-... +. +++|+|+|.||.+.. |+.|..+.+... ...+. +.|..
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~K-l~lYd~e~~~~~--~~p~~-------------------------vldl~ 53 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRK-ILFYNDEQDKEN--STPSM-------------------------ILDID 53 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCE-EEEEecCccccC--CCcEE-------------------------EEEcc
Confidence 4899974433 22 468999999998777 555555444210 00000 00111
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
. ..+.-.+..+.+. .++..+.++-|+|.... ++.+|-|+|+.|.+.|+.+|..-|
T Consensus 54 ~-~fhv~~V~asDVi-~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 54 K-LFHVRPVTQGDVY-RADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred c-eeeeecccHHHee-ecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 0 0011111222222 24556789999999876 899999999999999999998765
No 79
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.37 E-value=2.6e-06 Score=72.42 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=57.1
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCC-CCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSW-NSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~-~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
+|||||.--...- +.|||+|++|+.++ +.+|.++... +-+-++
T Consensus 1 lkEGWmVHyT~~d-~~rKRhYWrLDsK~-Itlf~~e~~skyyKeIP---------------------------------- 44 (117)
T cd01239 1 LKEGWMVHYTSSD-NRRKKHYWRLDSKA-ITLYQEESGSRYYKEIP---------------------------------- 44 (117)
T ss_pred CccceEEEEecCc-cceeeeEEEecCCe-EEEEEcCCCCeeeEEee----------------------------------
Confidence 4799997554433 78999999998776 6666665431 100000
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCC--------------------HHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAEN--------------------TLDQMDWIEKINGV 312 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeS--------------------e~e~~~WI~ai~~a 312 (491)
. .+.+.+..+.-.. .......|||+|+|...+|+.+.+. ....+.|-.||++|
T Consensus 45 L-sEIl~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 45 L-AEILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred h-HHheEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 0 0111111111110 1123568999999999999997752 34557899888864
No 80
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=98.19 E-value=3.8e-06 Score=87.57 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=65.6
Q ss_pred hhhccCCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccccc
Q 011187 169 QSAVKGKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY 248 (491)
Q Consensus 169 ~~~~~~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~ 248 (491)
|.--+..+.+.++|+|+.++.+ +|.|||.||||+..| |||+.+.....++......-+
T Consensus 308 q~Fl~s~~~pei~GfL~~K~dg-kKsWKk~yf~LR~SG-LYys~K~tsk~~r~Lq~l~~~-------------------- 365 (622)
T KOG3751|consen 308 QNFLSSSSPPEIQGFLYLKEDG-KKSWKKHYFVLRRSG-LYYSTKGTSKEPRHLQCLADL-------------------- 365 (622)
T ss_pred HHHHhcCCCccccceeeecccc-cccceeEEEEEecCc-ceEccCCCCCCchhhHHHHhc--------------------
Confidence 3334446678999999988554 589999999999999 777665544333211110000
Q ss_pred CCCcccccccceeEee-cCcceeecCCCCCCCcceEEEEeCC-----e-EEEEEeCCHHHHHHHHHHHHHHH
Q 011187 249 HGGVHDEKSVARHTVN-LLTSTIKPDADQSDLRFCFRIISPT-----K-VYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 249 ~~~v~~~~~~~~~~i~-l~~~~v~~~~~~~~r~fcF~I~t~~-----r-t~~lqAeSe~e~~~WI~ai~~ai 313 (491)
+ ...|- .+...-+.. ....|||.|+... | .-+||||++..++.|+.||+-+.
T Consensus 366 ~----------~snVYt~i~~rKkyk---sPTd~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 366 H----------SSNVYTGIGGRKKYK---SPTDYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred c----------cCceEEeecchhccC---CCCCceEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 0 00000 111111221 1224566665432 3 34799999999999999999776
No 81
>smart00721 BAR BAR domain.
Probab=98.19 E-value=1.2e-05 Score=78.26 Aligned_cols=96 Identities=23% Similarity=0.328 Sum_probs=86.6
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRM---DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~---~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~ 83 (491)
.+++++..-+||.+..++.++.+++.. +.+.+++++|..+|..|.....+|+..|..+...+...+++.+..|+.+|
T Consensus 140 ~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq 219 (239)
T smart00721 140 RKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQ 219 (239)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 468899999999999999988766432 26788999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 011187 84 LRFFKQGYELLHQMEPFIN 102 (491)
Q Consensus 84 ~~~f~~g~e~~~~l~~~~~ 102 (491)
..||+++++.++++.+++.
T Consensus 220 ~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 220 LNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998874
No 82
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.08 E-value=7e-06 Score=90.57 Aligned_cols=103 Identities=19% Similarity=0.339 Sum_probs=70.5
Q ss_pred cceeEEEEEeec-CCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKR-SSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Kr-s~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
..+.-.|||+.- .....+.|+||||+|. +|.+.|.+.+.+.-
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk------------------------------------ 1030 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK------------------------------------ 1030 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc------------------------------------
Confidence 346778998742 2223467999999995 66678878776631
Q ss_pred ccccceeEeecCcceeecCC----CCCCCcceEEEEe---------C----Ce-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDA----DQSDLRFCFRIIS---------P----TK-VYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~----~~~~r~fcF~I~t---------~----~r-t~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
...+...|+|..|+-.... +--.|++.|.|.+ + .| ...|.|++.+|++.|+.+|+.++..+
T Consensus 1031 -rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~L 1109 (1116)
T KOG3640|consen 1031 -RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQL 1109 (1116)
T ss_pred -ccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHH
Confidence 1234456777777654321 1135788899983 1 13 57899999999999999999887543
No 83
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.05 E-value=6.2e-06 Score=88.75 Aligned_cols=96 Identities=21% Similarity=0.407 Sum_probs=65.0
Q ss_pred eeEEEEEeecCCC----cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 178 TIKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 178 ~~keGyL~Krs~~----~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
+.|+|.|.|+..+ .++.+|||||.|++.. |.|.|+++..+...+.+.
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~-Ls~~Ksp~~q~~~~Ipl~---------------------------- 615 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEE-LSYAKSPGKQPIYTIPLS---------------------------- 615 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccce-eEEecCCccCcccceeHH----------------------------
Confidence 3444555565332 2367899999998554 999999877532211111
Q ss_pred cccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
-+.+.-+.....-+.+++|+|+..+|+.+|||.+-.|..+|+++|..+.
T Consensus 616 -----------nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 616 -----------NIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred -----------HHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 1111212222234668999999999999999999999999999998764
No 84
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.95 E-value=2.1e-05 Score=84.66 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=62.0
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+.+.|||+|.+... .|++|||.+.++++...+....... +. .. .
T Consensus 376 Dv~~~G~l~k~~~~~--~wk~ry~~l~~~~l~~~~~~~~~~~-~~-----------~~---------------------~ 420 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM--RWKKRYFYIGNGQLRISLSENPEND-GV-----------AP---------------------K 420 (478)
T ss_pred CcccceEEeccCCCc--chhhheEEecCCceEEEeccccccC-CC-----------CC---------------------c
Confidence 457899999987654 4999999998766655554332210 00 00 0
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
......+ ...+-+.. .....+++||.|.+. .+.++|+|+|++++++||.+|+.++
T Consensus 421 ~~~l~~~-~~v~pv~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 421 SVNLETV-NDVFPVPE-VYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cccHHHh-cccccccH-HhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 0000000 00111111 112346899999874 4789999999999999999999875
No 85
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=6.7e-06 Score=86.23 Aligned_cols=42 Identities=31% Similarity=0.505 Sum_probs=36.9
Q ss_pred CCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 273 DADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 273 ~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..+...++|+|.|.|.+ |.|.|||.|.+||+.||..|+-+.+
T Consensus 576 AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 576 ATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred CcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 35667889999999998 9999999999999999999985544
No 86
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=97.81 E-value=0.00026 Score=67.63 Aligned_cols=93 Identities=26% Similarity=0.321 Sum_probs=80.7
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
.+++++..-+||.+.+++.++.+++..... +.++.+++..|.....+|...|..+...+.-.+...+..|+.++..|
T Consensus 137 ~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~---~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~ 213 (229)
T PF03114_consen 137 IKKREKKRLDYDSARSKLEKLRKKKSKSSK---EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQY 213 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTSSBTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999977764432 78899999999999999999999999776644448999999999999
Q ss_pred HHHHHHHHhhhHHHHH
Q 011187 87 FKQGYELLHQMEPFIN 102 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~ 102 (491)
|+.+++.++++.|.+.
T Consensus 214 ~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 214 FQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999988763
No 87
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.80 E-value=0.00029 Score=59.14 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=35.6
Q ss_pred CCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 275 DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 275 ~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
|...-+++|.|.++.+++.+||+|.++..+||+.|+.|+
T Consensus 60 D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 60 DRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 444568999999999999999999999999999999886
No 88
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.73 E-value=0.00019 Score=58.69 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=58.6
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
+++.|.+.|+.+ + .+++|-++|++...|+|........
T Consensus 1 Il~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~--------------------------------------- 38 (89)
T cd01262 1 ILKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVV--------------------------------------- 38 (89)
T ss_pred Cceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeE---------------------------------------
Confidence 357899999865 3 5799999999888888876554321
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
.+.|+.....+.+.. .....|.|.||+|+|+|. +-+.....|+.+|+.+
T Consensus 39 --KgeIp~s~~~l~v~~---~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 39 --KGEIPWSDVELRVEV---KNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --EeEecccccceEEEE---ecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 112222211111111 113569999999999995 5568899999999865
No 89
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.69 E-value=0.00045 Score=74.87 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 278 ~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
+.+|.|-|.+. +|.+.|||.+++|++.||.+||.++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhc
Confidence 46899999875 5999999999999999999999876
No 90
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.68 E-value=6.3e-05 Score=63.20 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=64.3
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++.+||+.|.|+.+...|++|||-|..|.+ -+|....+..+ .+
T Consensus 2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRL-E~~~~~~~~~~------------------eL----------------- 45 (116)
T cd01240 2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRL-ELYGESEANKP------------------EL----------------- 45 (116)
T ss_pred ceEEeeehhhhCCHHHHHHHHHHheeCccee-eecccccccCC------------------cE-----------------
Confidence 3678999999998888899999999998774 33332222100 00
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
..+.-. -.|.++-....-..|..|...+ +.++|+++++-+..+|..-|+.+-..+
T Consensus 46 ----i~M~~i-~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~S 101 (116)
T cd01240 46 ----ITMDQI-EDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRES 101 (116)
T ss_pred ----EEeehh-hhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 000000 0111110111336799988865 789999999999999999999876443
No 91
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.67 E-value=0.00087 Score=56.25 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=31.3
Q ss_pred cceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 280 RFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 280 ~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
+++|.|.+.+ +.|.|||.|.++.+.||++|+.+|
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 7999998765 699999999999999999999886
No 92
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.61 E-value=0.00028 Score=60.15 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 278 ~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
++.+||.|.+.. .+++|..|+..|+..|..||+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 678999999987 5899999999999999999974
No 93
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.55 E-value=0.0012 Score=57.91 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=32.5
Q ss_pred CcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 279 LRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 279 r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
-.++|.|.+++|++-|.|+|.++.+-|+.+|+..+.
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999986553
No 94
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.48 E-value=0.00059 Score=63.90 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=64.8
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKR-FELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~-~e~le~l~~~~~a~~~ 85 (491)
++.||..+++|++.+.||++...+++ +.+--+..-|+.|+..+|||...|+.+...++ =++++.+..|...+..
T Consensus 102 kK~FEeeSKdYYs~l~kYLsn~~~~k-----~~DSK~l~KRk~FEL~RFDY~~~mqdl~ggr~~qell~~L~kf~~~q~~ 176 (192)
T cd07608 102 KKDFEEESKDYYSWLSKYLSNESDKK-----RPDSKLLAKRKTFELSRFDYLNYLQDLHGGRKEQELLSILTKFINQQYD 176 (192)
T ss_pred hhhHHHHhHHHHHHHHHHhccccccc-----CcchHHHHHHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 68999999999999999999874222 23446778899999999999999999986555 4678999999998777
Q ss_pred HHHHHH
Q 011187 86 FFKQGY 91 (491)
Q Consensus 86 ~f~~g~ 91 (491)
.+....
T Consensus 177 ~~~~~~ 182 (192)
T cd07608 177 SIALTS 182 (192)
T ss_pred HHHhHh
Confidence 666543
No 95
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.44 E-value=0.0029 Score=53.91 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=61.8
Q ss_pred eeEEEEEeecCCCcccCc-eEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 178 TIKQGYLSKRSSNLRADW-KRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~W-krRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+.+|=|.+.+.. +.| +.|+|+|-++. |.|.|...-. + + .
T Consensus 2 li~~Gel~~~s~~--~g~~q~R~~FLFD~~-LI~CKkd~~r--~---------------------------------~-~ 42 (109)
T cd01224 2 LFLQGEATRQKQN--KGWNSSRVLFLFDHQ-MVLCKKDLIR--R---------------------------------D-H 42 (109)
T ss_pred ceEeeeEEEEecc--cCCcccEEEEEecce-EEEEeccccc--C---------------------------------C-c
Confidence 4678888877632 223 46888888555 5554432110 0 0 0
Q ss_pred ccceeEeecCcceeecCCCCCC------CcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSD------LRFCFRIISPT--KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~------r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
-...+.+++..+.|...++..+ -++.|.|+..+ ..|.|+|.|.++...||+||..
T Consensus 43 ~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 43 LYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 1234556666666665444432 27899999876 6799999999999999999863
No 96
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.42 E-value=9.3e-05 Score=79.45 Aligned_cols=98 Identities=22% Similarity=0.435 Sum_probs=70.5
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
....|.||+.+.+.+. +.|+|||||++ +|...||+.+++.. .
T Consensus 247 e~~ekSgy~~~~~s~~-k~lkrr~~v~k-~gqi~~y~~~~~~~------------------------------------~ 288 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRI-KSLKRRYVVFK-NGQISFYRKHNNRD------------------------------------E 288 (936)
T ss_pred chhhcccchhcchHHH-HHHHhHheeec-cceEEEEEcCCCcc------------------------------------c
Confidence 3457899999887655 88999999996 67788888876631 0
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.+...+++...++.. ...-.+.|++++...+|+|-++|+.-..+|+..|+.+|...
T Consensus 289 --~p~s~~d~~s~~~~~---~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 289 --EPASKIDIRSVTKLE---QQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred --cccCcccccccceee---ccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHH
Confidence 111112222212111 12336789999999999999999999999999999999754
No 97
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.26 E-value=0.00015 Score=76.54 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=34.8
Q ss_pred CcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 279 LRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 279 r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
-+-.|+|.|.+.||.|.|.+++..++|++.|+-|++-+-
T Consensus 802 lpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 802 LPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred cchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999998876553
No 98
>PLN02866 phospholipase D
Probab=97.24 E-value=0.0022 Score=73.21 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 278 ~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..+|.|.|...+|++.|.|.|...+..|+.+|+.+..
T Consensus 272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999998753
No 99
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.23 E-value=0.0017 Score=71.54 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=63.0
Q ss_pred eeEEEEEeecCCC--cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 178 TIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 178 ~~keGyL~Krs~~--~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
+.++|||+.-+.+ ...--++|||||.++. |.|||.+.... .
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~-~~~yK~~P~~~------------------------------------~ 46 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRL-LAYYKKKPQDN------------------------------------Q 46 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecch-hhhcccCCccc------------------------------------c
Confidence 4689999976554 3456789999998666 66666542210 0
Q ss_pred cccceeEeecCcceeecCCCC---CCCcceEEEEeC---CeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 256 KSVARHTVNLLTSTIKPDADQ---SDLRFCFRIISP---TKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~---~~r~fcF~I~t~---~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+.....|+. .|.|.-.... ..--|.|.|... .+...|.|-|.+|...||+||+.||......
T Consensus 47 ~pirs~~id~-~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~ 115 (719)
T PLN00188 47 VPIKTLLIDG-NCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDS 115 (719)
T ss_pred ccceeeccCC-CceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccc
Confidence 0011111111 1122111000 011377777764 3689999999999999999999999865433
No 100
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.17 E-value=0.0043 Score=54.35 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=27.3
Q ss_pred CCcceEEEEe------CCeEEEEEeCCHHHHHHHHHHHH
Q 011187 278 DLRFCFRIIS------PTKVYTLQAENTLDQMDWIEKIN 310 (491)
Q Consensus 278 ~r~fcF~I~t------~~rt~~lqAeSe~e~~~WI~ai~ 310 (491)
..++.|.|.- ..+.+.|+|+|+.|+..||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3478999962 23689999999999999999984
No 101
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.94 E-value=0.0016 Score=67.71 Aligned_cols=93 Identities=24% Similarity=0.409 Sum_probs=66.7
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
+...|+|-|... ....|+-|||+|..++ |.||++...... |
T Consensus 24 ~e~~G~lskwtn-yi~gwqdRyv~lk~g~-Lsyykse~E~~h------------------G------------------- 64 (611)
T KOG1739|consen 24 VERCGVLSKWTN-YIHGWQDRYVVLKNGA-LSYYKSEDETEH------------------G------------------- 64 (611)
T ss_pred hhhcceeeeeec-ccccccceEEEEcccc-hhhhhhhhhhhc------------------c-------------------
Confidence 346788888743 3478999999997555 888888765321 0
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
-++.|.+..+.+.+...+ -..|.|.+..-.+++.|.....++.|+++|+--.
T Consensus 65 -cRgsi~l~ka~i~ahEfD---e~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk 116 (611)
T KOG1739|consen 65 -CRGSICLSKAVITAHEFD---ECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMK 116 (611)
T ss_pred -cceeeEeccCCcccccch---hheeeeEeccceeeehhcCcHHHHHHHHHHHHHh
Confidence 123344556666665333 3559999999999999999999999999998644
No 102
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.89 E-value=0.00023 Score=78.06 Aligned_cols=93 Identities=20% Similarity=0.414 Sum_probs=68.7
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
...|||+.+-++. ..|+|-|.|..+ -.|++||+..+..+
T Consensus 925 qLsg~Llrkfkns-sgwqkLwvvft~-fcl~fyKS~qD~~~--------------------------------------- 963 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS-SGWQKLWVVFTN-FCLFFYKSHQDSEP--------------------------------------- 963 (1036)
T ss_pred hhhHHHHHHhhcc-ccceeeeeeecc-eeeEeecccccccc---------------------------------------
Confidence 4679998554443 579999999974 56888888777422
Q ss_pred ceeEeecCcceeec--CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 259 ARHTVNLLTSTIKP--DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 259 ~~~~i~l~~~~v~~--~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
...++|++.++.+ .++...+.|.|.|...+..|+|.|+++-....||++|+.+-
T Consensus 964 -laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 964 -LASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred -cccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcCC
Confidence 1223344444433 34556788999999999999999999999999999998653
No 103
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=96.64 E-value=0.029 Score=55.13 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=77.6
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTR----MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDA 82 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~----~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a 82 (491)
.++.+..--+||.+..|+.+-.|... +..+..+..++..+...|.++.=+++..|..+-.+ ..+++..|..|+.+
T Consensus 127 RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~a 205 (244)
T cd07595 127 KKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAK-EAEIASYLIDLIEA 205 (244)
T ss_pred HHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHH
Confidence 46677788899999999976543211 22234456788888899999999999888877554 57899999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 011187 83 HLRFFKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 83 ~~~~f~~g~e~~~~l~~~~~~l~~ 106 (491)
|..|+++++++++.+-|.|+....
T Consensus 206 Ql~YH~~a~e~L~~l~~~l~~~~~ 229 (244)
T cd07595 206 QREYHRTALSVLEAVLPELQEQIE 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877776544
No 104
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.55 E-value=0.0018 Score=71.39 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011187 40 EEDLHNARTSFEQARFNLV----GALSNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSREC 114 (491)
Q Consensus 40 ~~~L~~~Rk~f~~asldyv----~~l~~lq~kk~~e~-le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~ 114 (491)
...+...=+.|+....+|. +.+..|+.-..+.+ +|++++++..-+.-|.+++....-+-..-+.|+..+-.++
T Consensus 651 ~~r~~~v~kefelqkvcyLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e-- 728 (1036)
T KOG3531|consen 651 LTRLEAVYKEFELQKVCYLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE-- 728 (1036)
T ss_pred hhhHHhhhccHHhhhccccccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH--
Confidence 3445555588999999997 57777777766655 8999999988888888888777776666666666554443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchHHHHHHHhhhccCCcceeEEEEEeecCCCcccC
Q 011187 115 SDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLIEAAMQSAVKGKVQTIKQGYLSKRSSNLRAD 194 (491)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~keGyL~Krs~~~~k~ 194 (491)
+..+|.+.+ ........|. ...+.+|-|.|-++ ++
T Consensus 729 ---~l~Elkrdl-------------~s~e~LV~p~--------------------------rE~ir~g~llK~sk---kg 763 (1036)
T KOG3531|consen 729 ---KLRELKRDL-------------ASIENLVHPG--------------------------REFIRSGCLLKLSK---KG 763 (1036)
T ss_pred ---HHHHHHHhh-------------hccccccCcc--------------------------hhhhhcCCchhhcc---cc
Confidence 111111111 0011111221 23677899998864 45
Q ss_pred ceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccceeEeecCcceeecCC
Q 011187 195 WKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDA 274 (491)
Q Consensus 195 WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~ 274 (491)
-++|-|+|-++-+||--+.+ +. .+.+ ...+.+++. ..++-..
T Consensus 764 LqqrmfFLfsdillytsk~~-~~-------~~~f-----------------------------ri~g~lP~~-l~~en~e 805 (1036)
T KOG3531|consen 764 LQQRMFFLFSDILLYTSKGP-DV-------QKCF-----------------------------RINGDLPLT-LTMENSE 805 (1036)
T ss_pred chhhhhhhhhhhheeccCCC-Ch-------hhee-----------------------------EeccCCceE-eeeeccc
Confidence 78898888777655522221 10 0000 111122222 2333322
Q ss_pred CCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCC
Q 011187 275 DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQT 321 (491)
Q Consensus 275 ~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~ 321 (491)
.+..-++||.|.+..+..+..|.+..+.+.|+..++.+|..+..+..
T Consensus 806 n~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~ 852 (1036)
T KOG3531|consen 806 NEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSS 852 (1036)
T ss_pred ccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCC
Confidence 33456899999999999999999999999999999999976665533
No 105
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.46 E-value=0.02 Score=48.73 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=40.3
Q ss_pred eEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 261 HTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 261 ~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
+.+++...+|....+..+.++.|+|..+. -+..+-|.+.+|..+||..|+..+
T Consensus 56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 44556666665433445668999999887 578888899999999999998744
No 106
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.29 E-value=0.0091 Score=66.15 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=63.4
Q ss_pred eeEEEEEeecCCC---------cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccccc
Q 011187 178 TIKQGYLSKRSSN---------LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY 248 (491)
Q Consensus 178 ~~keGyL~Krs~~---------~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~ 248 (491)
+...|+||++-+. .+.--.|+|||| ++|.|+||.++...+|-+
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVl-g~g~ls~fen~~S~tP~~--------------------------- 543 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVL-GGGFLSYFENEKSTTPNG--------------------------- 543 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEc-CcchhhhhhhcCCCCCCc---------------------------
Confidence 3455999986432 233467899999 689999999887644310
Q ss_pred CCCcccccccceeEeecCcceeecCCCCC---CCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 249 HGGVHDEKSVARHTVNLLTSTIKPDADQS---DLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 249 ~~~v~~~~~~~~~~i~l~~~~v~~~~~~~---~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
...++-..|..-..++.. .-.|.|+|..+. |.|+|-+++.++...|..+|-..
T Consensus 544 -----------lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 544 -----------LININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred -----------eeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHh
Confidence 011111122222222222 346899999886 89999999999999999887544
No 107
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.28 E-value=0.073 Score=46.06 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=28.3
Q ss_pred cceEEEEe--CC---eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 280 RFCFRIIS--PT---KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 280 ~fcF~I~t--~~---rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
+++|+|.+ +. .+|+|||.|.++.++||..|+.++.
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 56677754 33 6899999999999999999987653
No 108
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.04 E-value=0.042 Score=47.40 Aligned_cols=38 Identities=8% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 278 ~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
...|+|.|+..+ ..|+|.|.|+++++.||++|.-|++.
T Consensus 74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 357899999876 57999999999999999999988764
No 109
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.91 E-value=0.093 Score=50.89 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=75.9
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCC--c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTR--M--DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~--~--~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~ 83 (491)
++-+...-+||.++.++-++.-+++ + ..|..++.++..|+..|...-=.|.-.|..+=..+--=|.+.+-+|+..+
T Consensus 115 ~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Q 194 (225)
T cd07590 115 KRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQ 194 (225)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHH
Confidence 3557778899999999988775544 2 55677888999999999887777777777775554444566777999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 011187 84 LRFFKQGYELLHQMEPFINQVL 105 (491)
Q Consensus 84 ~~~f~~g~e~~~~l~~~~~~l~ 105 (491)
..||..++..+.+|.++++.-.
T Consensus 195 l~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 195 VLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999988887776543
No 110
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=95.61 E-value=0.004 Score=66.62 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=65.5
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCce----EEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGL----LYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~----L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...||||--+.+..|.||+|||+|-.-.. ++-|+.+..
T Consensus 465 khsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekka-------------------------------------- 506 (1218)
T KOG3543|consen 465 KHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKA-------------------------------------- 506 (1218)
T ss_pred ccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhccc--------------------------------------
Confidence 45799999988888999999999953110 111121111
Q ss_pred ccccceeEeecCcceeecCCCC---CCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 255 EKSVARHTVNLLTSTIKPDADQ---SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~---~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+.+-+.|.+.+|...+.. ..-++-|.-+-.+.+..|..+++.|+.-|++|+-.|.-.++.+
T Consensus 507 ---epqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqsykp 571 (1218)
T KOG3543|consen 507 ---EPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSYKP 571 (1218)
T ss_pred ---ChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcCCC
Confidence 1222334445555443211 2235668888788899999999999999999998886555443
No 111
>PF15406 PH_6: Pleckstrin homology domain
Probab=95.57 E-value=0.035 Score=47.00 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=25.7
Q ss_pred ceEEEEeCCeEEEEEeCCHHHHHHHHHHHH
Q 011187 281 FCFRIISPTKVYTLQAENTLDQMDWIEKIN 310 (491)
Q Consensus 281 fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~ 310 (491)
.-|.+...+....|+|.|..||+.||.+|.
T Consensus 81 ~kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 81 NKFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 346666688999999999999999999986
No 112
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=95.49 E-value=0.24 Score=48.64 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=67.6
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKST------RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTM 80 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k------~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~ 80 (491)
.++.+..--+||.+..|+.+-.++- .+..+.-..+++.++|..|+++.=.|+..|-.+ --+..+.+..+..|+
T Consensus 127 RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~~-l~~e~e~~~~l~~lv 205 (246)
T cd07618 127 RKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYNF-ASKEGEYAKFFVLLL 205 (246)
T ss_pred HHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHH
Confidence 4667778888999999986543211 012222233445555555555554444433333 267889999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011187 81 DAHLRFFKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 81 ~a~~~~f~~g~e~~~~l~~~~~~l~~ 106 (491)
.+|..|+++++++++.+-|.|+.+..
T Consensus 206 ~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 206 EAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877664
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=95.18 E-value=0.0044 Score=70.16 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=60.9
Q ss_pred HcccCCCcccCCCCC-CCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhc
Q 011187 398 RRVYGNNKCADCGAS-EPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEE 475 (491)
Q Consensus 398 ~~~~~N~~C~dCg~~-~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~ 475 (491)
.....+..|++|++. ...|+++|+.+.+|+.|+++|+..+.|++..+++.|| ...+ +......||..++..|..
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~--~ga~--vn~~d~~g~~plh~~~~~ 699 (785)
T KOG0521|consen 625 VKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQ--NGAD--VNALDSKGRTPLHHATAS 699 (785)
T ss_pred HHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHh--cCCc--chhhhccCCCcchhhhhh
Confidence 344468899999995 5799999999999999999999999999999999999 3443 777777777766666643
No 114
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=95.05 E-value=0.19 Score=48.84 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=67.4
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||.+..|+.+. |.++...+.+.+|..+.-.|.++.=+-...|..|... ..+.+..|..|+.||+.||
T Consensus 140 KkLe~rRLd~D~~k~r~~kA---k~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv~AQl~Yh 215 (229)
T cd07594 140 KLLENKRLDLDACKTRVKKA---KSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFVEAQMTYY 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHH
Confidence 45566667899999987543 3344345578888899999988876666677766432 3578899999999999999
Q ss_pred HHHHHHHhhhHHH
Q 011187 88 KQGYELLHQMEPF 100 (491)
Q Consensus 88 ~~g~e~~~~l~~~ 100 (491)
.++++++.+|.+.
T Consensus 216 ~q~~e~L~~l~~~ 228 (229)
T cd07594 216 AQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 115
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=94.87 E-value=0.3 Score=47.29 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=62.5
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||....|+. | . .+.+|..+...|.++.=+....|..+.. ...+.+..|..|+.||..||
T Consensus 135 KkLe~rRLdyD~~k~k~~---k--~------~eeEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~Yh 202 (223)
T cd07592 135 KKLEGRRLDYDYKKRKQG---K--G------PDEELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHHhcc---c--C------chHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 344455556777666642 1 1 3577888888898888777778877655 45788999999999999999
Q ss_pred HHHHHHHhhhHHHHH
Q 011187 88 KQGYELLHQMEPFIN 102 (491)
Q Consensus 88 ~~g~e~~~~l~~~~~ 102 (491)
+++++.+.++.+-|.
T Consensus 203 ~~~~e~L~~l~~~L~ 217 (223)
T cd07592 203 RQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766654
No 116
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=94.87 E-value=0.33 Score=46.76 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=66.8
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||.+.+|+.+-.+.. ...+++|..+.-.|.++.=+....|..|... ..+.+..|..|+.||+.||
T Consensus 121 KkLe~rRLdyD~~ksk~~kak~~~-----~~~eeElr~Ae~kfees~E~a~~~M~~i~~~-e~e~~~~L~~lv~AQl~Yh 194 (215)
T cd07593 121 KKLESRRLAYDAALTKSQKAKKED-----SRLEEELRRAKAKYEESSEDVEARMVAIKES-EADQYRDLTDLLDAELDYH 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH
Confidence 445555667899888877653332 3467888899999999888887888777543 4678999999999999999
Q ss_pred HHHHHHHhhhHH
Q 011187 88 KQGYELLHQMEP 99 (491)
Q Consensus 88 ~~g~e~~~~l~~ 99 (491)
+++++++++|..
T Consensus 195 ~q~~e~L~~l~~ 206 (215)
T cd07593 195 QQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 117
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.80 E-value=0.18 Score=41.78 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=25.2
Q ss_pred EEE-EeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 283 FRI-ISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 283 F~I-~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
|.+ .+++++|.|.|.|..|+.+||++|+..
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 444 457899999999999999999999753
No 118
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=94.60 E-value=0.44 Score=46.23 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=69.7
Q ss_pred hhhhhHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 10 FNGDGNFVLQAREKFLSLRKS--TRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 10 Fd~~~~~yd~~~~ky~~lsk~--k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
-+...-+||.+..++-+|..+ +.+..|..++.+|..++..|...-=.|.-.|..+-...--=+.+.+-+|+..|.+||
T Consensus 118 R~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~ 197 (224)
T cd07591 118 RNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFF 197 (224)
T ss_pred HHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888888877544 345677889999999999998888777777777755444334556668999999999
Q ss_pred HHHHHHHhhhHHHHH
Q 011187 88 KQGYELLHQMEPFIN 102 (491)
Q Consensus 88 ~~g~e~~~~l~~~~~ 102 (491)
.++|..+..+..++.
T Consensus 198 ~~~y~~l~~~~~~~~ 212 (224)
T cd07591 198 TEGYERLAQVQRYLD 212 (224)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999998877666554
No 119
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=94.55 E-value=0.31 Score=47.29 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=63.0
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||....|+.+- |.++.-.+.+.+|..++-.|.++.=+....+..|. ....+.+..|..|+.||+.||
T Consensus 140 KkLe~rRLdyD~~K~r~~kA---k~~~~~~~~e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh 215 (229)
T cd07616 140 KLLQNKRLDLDAAKTRLKKA---KVAEARAAAEQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYY 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CcchhhcchHHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHH
Confidence 44555566799999887533 33333234577788888888866655545444443 336788999999999999999
Q ss_pred HHHHHHHhhhHH
Q 011187 88 KQGYELLHQMEP 99 (491)
Q Consensus 88 ~~g~e~~~~l~~ 99 (491)
.++++++.+|..
T Consensus 216 ~~~~e~L~~L~~ 227 (229)
T cd07616 216 AQCYQYMLDLQK 227 (229)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 120
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=94.17 E-value=0.68 Score=44.50 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHhccCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 011187 12 GDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (491)
Q Consensus 12 ~~~~~yd~~~~ky~~lsk~k--~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~ 89 (491)
...-+||++..++-+|..++ .+..|..++++|..|+..|...-=.|.-.|..|-..+--=+.+.+-+++.++..||..
T Consensus 115 ~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e 194 (211)
T cd07588 115 RKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKE 194 (211)
T ss_pred hHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999998876554 4667788999999999999887777777777775554444566777999999999999
Q ss_pred HHHHHhhhHHHHHHH
Q 011187 90 GYELLHQMEPFINQV 104 (491)
Q Consensus 90 g~e~~~~l~~~~~~l 104 (491)
.+.+..+|..-|..|
T Consensus 195 ~~~~~~~l~~~~~~l 209 (211)
T cd07588 195 IGKVNTKLNDVMDGL 209 (211)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888877776665
No 121
>PF15408 PH_7: Pleckstrin homology domain
Probab=94.12 E-value=0.027 Score=45.44 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.8
Q ss_pred cceEEEEeCCe-EEEEEeCCHHHHHHHHHHHHH
Q 011187 280 RFCFRIISPTK-VYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 280 ~fcF~I~t~~r-t~~lqAeSe~e~~~WI~ai~~ 311 (491)
.|.|-...+++ ..-+-|+|.+-++.||++++.
T Consensus 63 A~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 63 AFGFLMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEEEEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 46677777774 566889999999999999974
No 122
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.09 E-value=0.65 Score=41.26 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=31.7
Q ss_pred cceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 280 RFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 280 ~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
+..|+|.+.+ .+|+|||.|.+..+.|+..|...+..-
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 6779998866 589999999999999999999877543
No 123
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=94.05 E-value=0.91 Score=43.53 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011187 11 NGDGNFVLQAREKFLSLRKS--TRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFK 88 (491)
Q Consensus 11 d~~~~~yd~~~~ky~~lsk~--k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~ 88 (491)
+...-+||+++.++-+|.-+ |.+..|..++++|..|+..|...==.|.-.|..|=..+--=+.+.+-+++..+..||.
T Consensus 114 ~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~ 193 (211)
T cd07611 114 SRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHK 193 (211)
T ss_pred HHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence 34466899999999887543 4466678888999999998865555555555555333333345677788889999999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 011187 89 QGYELLHQMEPFINQVL 105 (491)
Q Consensus 89 ~g~e~~~~l~~~~~~l~ 105 (491)
....+...|..-|..|.
T Consensus 194 E~~k~~~~l~~~~~~l~ 210 (211)
T cd07611 194 EISVLCHKLYEVMTKLG 210 (211)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88887777777776653
No 124
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=93.96 E-value=0.9 Score=43.27 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=76.8
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRM------DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~------~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~ 81 (491)
++++.+--.||+++.+--.++..-.| ...+.+..+...+|..|.+-+.|.+.+|..|...+.-.+...|..|..
T Consensus 105 ~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~ 184 (203)
T cd00011 105 KQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHN 184 (203)
T ss_pred HHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56788888899998888777654433 335677788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 011187 82 AHLRFFKQGYELLHQM 97 (491)
Q Consensus 82 a~~~~f~~g~e~~~~l 97 (491)
+...||......+++.
T Consensus 185 al~~y~~~~~~~l~~~ 200 (203)
T cd00011 185 TVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 9999999998888763
No 125
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.82 E-value=0.23 Score=42.81 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCcceEEEEeCC----eEEEEEeCCHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT----KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 278 ~r~fcF~I~t~~----rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
....||.|+... +++.|-|+|+++++.|+..|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 346899999765 5899999999999999999863
No 126
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.79 E-value=1 Score=44.30 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=60.3
Q ss_pred chhhhhhhHHHHHHHHHHhccCCC----------C-CchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKS----------T-RMDVAVVIEED----LHNARTSFEQARFNLVGALSNVEAKKRFE 71 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~----------k-~~~~l~E~~~~----L~~~Rk~f~~asldyv~~l~~lq~kk~~e 71 (491)
.++.++.--+||....|+.+-+++ + +.+.++++.++ +..+|-.+...++.++ .+..+
T Consensus 127 RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l--------~~e~e 198 (248)
T cd07619 127 RKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFV--------AKEID 198 (248)
T ss_pred HHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHHH
Confidence 456777778899999999765542 1 22333332222 2222223333333332 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011187 72 LLEAVGGTMDAHLRFFKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 72 ~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~l~~ 106 (491)
.++.+..|+.+|..|+++++++++.+-|.|+.+..
T Consensus 199 ~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 199 YANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999998888877665
No 127
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.64 E-value=0.77 Score=45.08 Aligned_cols=90 Identities=8% Similarity=0.028 Sum_probs=64.0
Q ss_pred cchhhhhhhHHHHHHHHHHhccCC---------------------CC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRK---------------------ST---RMDVAVVIEEDLHNARTSFEQARFNLVGAL 61 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk---------------------~k---~~~~l~E~~~~L~~~Rk~f~~asldyv~~l 61 (491)
-+|++.+.--+||....||..-.| .| ..+-+.|+.+.+...|-.|...+++++-
T Consensus 126 ~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~-- 203 (257)
T cd07620 126 NKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFAT-- 203 (257)
T ss_pred HHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 367889999999999999954322 11 1233455555666666666666665553
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011187 62 SNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQ 103 (491)
Q Consensus 62 ~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~ 103 (491)
+..+.+..++.|+.+|..|++++.++++.+-|.|++
T Consensus 204 ------kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 204 ------KEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999999999999999999988776665543
No 128
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.63 E-value=0.66 Score=45.54 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=63.0
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||.+..++.+.++..+. .+...++..+...|..+.=+-+..|..| ....+.++.|..|+.||+.||
T Consensus 154 Kkle~~RLd~D~~K~~~~ka~~~~k~---~~~~~e~E~aEdef~~a~E~a~~~M~~i--l~~~e~i~~L~~fv~AQl~Yh 228 (242)
T cd07600 154 KKVEDKRLQLDTARAELKSAEPAEKQ---EAARVEVETAEDEFVSATEEAVELMKEV--LDNPEPLQLLKELVKAQLAYH 228 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc---cchHHHHHHHHHHHHHhHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHH
Confidence 44555566899999988665432121 2244555667777877775666777777 333889999999999999999
Q ss_pred HHHHHHHhhhHH
Q 011187 88 KQGYELLHQMEP 99 (491)
Q Consensus 88 ~~g~e~~~~l~~ 99 (491)
.++++.+.++.+
T Consensus 229 ~~~~e~L~~l~~ 240 (242)
T cd07600 229 KTAAELLEELLS 240 (242)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 129
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=93.58 E-value=1.1 Score=43.06 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHhccC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 011187 12 GDGNFVLQAREKFLSLR--KSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (491)
Q Consensus 12 ~~~~~yd~~~~ky~~ls--k~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~ 89 (491)
...-+||+++.++-++. +++.+..|..++++|..|+..|...==.|.-.|..|=..+--=+.+.+-+++..+..||..
T Consensus 115 ~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E 194 (211)
T cd07612 115 RKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKE 194 (211)
T ss_pred HHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34567999988888874 3444667788999999999999766666666666664444333566777889999999999
Q ss_pred HHHHHhhhHHHHHHHH
Q 011187 90 GYELLHQMEPFINQVL 105 (491)
Q Consensus 90 g~e~~~~l~~~~~~l~ 105 (491)
.+.+..+|..-|..|.
T Consensus 195 ~~k~~~~l~~~~~~l~ 210 (211)
T cd07612 195 MSKLNHDLYNVMKKLE 210 (211)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888777777653
No 130
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=93.50 E-value=0.86 Score=44.09 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011187 40 EEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQ 103 (491)
Q Consensus 40 ~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~ 103 (491)
+++|..+.-.|..+.=+....|..|... ..+.+..|..|+.||+.||+++++++.++.+.+++
T Consensus 156 eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 156 DEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778877776666666666543 23788899999999999999999999998887764
No 131
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=93.36 E-value=0.94 Score=43.01 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=69.5
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKST----RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k----~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~ 83 (491)
++++.+--.||+.+...-.+.-.. +...+.++..+...+|..|.+.+-|.+++|.-|+..+--.+...|..|..|.
T Consensus 104 ~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~ 183 (201)
T cd07660 104 KQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAI 183 (201)
T ss_pred HHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456666667777764443322222 1223456777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011187 84 LRFFKQGYELLHQ 96 (491)
Q Consensus 84 ~~~f~~g~e~~~~ 96 (491)
..||..+++.++.
T Consensus 184 ~ay~sgn~~~L~~ 196 (201)
T cd07660 184 SAYFSGNQKQLEQ 196 (201)
T ss_pred HHHHHhHHHHHHH
Confidence 9999999888764
No 132
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=93.20 E-value=1.1 Score=43.68 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=74.3
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRM------DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~------~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~ 81 (491)
++|+.+--.||+++.+.-.++....| ...++...+...+|..|.+.+.|.+.+|..|...+.-.+...|..|..
T Consensus 137 k~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~ 216 (229)
T PF06456_consen 137 KKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQN 216 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57888899999999988888854433 345777788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011187 82 AHLRFFKQGYELL 94 (491)
Q Consensus 82 a~~~~f~~g~e~~ 94 (491)
+...||....+.+
T Consensus 217 al~~y~~~~~~~l 229 (229)
T PF06456_consen 217 ALAAYFSGNAQAL 229 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhC
Confidence 9999999887754
No 133
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.01 E-value=0.94 Score=42.54 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.6
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 288 PTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 288 ~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
++|+++|.|-|..|++.||-+|..
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHh
Confidence 457999999999999999999974
No 134
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=92.58 E-value=0.078 Score=59.66 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=60.3
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccccc
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSV 258 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~ 258 (491)
-.+|||+|.. +..+.|.+|||+|. +|.+.||++...... .+
T Consensus 78 ~~~g~l~k~~-n~~~~~~~r~f~l~-~g~ls~~~~~~~~~~---------------------------~~---------- 118 (799)
T KOG1737|consen 78 SLEGILLKWR-NYSKGPSSRWFVLS-GGLLSYYFDNSFSKT---------------------------TC---------- 118 (799)
T ss_pred cccceeeccc-cccCCcccceEEec-CcceeeeccCCcccc---------------------------CC----------
Confidence 4589999984 44589999999998 999999988654210 00
Q ss_pred ceeEeecCcceeecCCCCCCCcceEEEEe-CCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 259 ARHTVNLLTSTIKPDADQSDLRFCFRIIS-PTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 259 ~~~~i~l~~~~v~~~~~~~~r~fcF~I~t-~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
...+.+.+..+.- .+ ..-+.++. ...+|+..+-+..+++.|+.+++-+-......
T Consensus 119 -~~~~~~~~a~i~~----~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (799)
T KOG1737|consen 119 -GGGINLVTAWIQN----GE-RMDICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQ 174 (799)
T ss_pred -CCccccccccccc----CC-CcccchhhcccchhhhhhhHHHhhcchhhhhhhccchhhhc
Confidence 0111222222221 11 11122222 24678899999999999999999875444443
No 135
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=92.46 E-value=0.56 Score=39.28 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 277 SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 277 ~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
.|+.+.|-|...+ -.|+|.|.++++++.||..|+.
T Consensus 71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3567899998876 5799999999999999999975
No 136
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=92.33 E-value=1.1 Score=47.37 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=34.0
Q ss_pred cCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 265 LLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 265 l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
+.+..|....+....+..|+|..+. ..+..-|+.+.+.++|+++++.
T Consensus 357 ~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 357 TTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred cceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 4444454443444557789998876 3467789999999999999985
No 137
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=92.16 E-value=1.5 Score=42.42 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011187 40 EEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQ 103 (491)
Q Consensus 40 ~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~ 103 (491)
.+++..+.-.|..+.=+....|..|... ..+.+..|..|+.||+.|++++.++++++.|.+.+
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~le~-e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777877776666666665432 36788999999999999999999999998887763
No 138
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=91.95 E-value=1.6 Score=37.41 Aligned_cols=39 Identities=13% Similarity=0.366 Sum_probs=34.4
Q ss_pred CCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 277 SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 277 ~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+.++.|.|.|..+.+.|.|+|..+.+.|++.|+.-+..
T Consensus 67 ~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 67 GEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred CceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999876643
No 139
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=91.40 E-value=2.1 Score=41.50 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=56.9
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
|+.+..--+||....|+ +| .+ +++|..+...|.++.=+....|..|... ..+.++.|..|+.||+.||
T Consensus 135 KkLe~rRLdyD~~K~r~---~k--~~------eeelr~a~ekFees~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh 202 (223)
T cd07614 135 KKLEGRRLDFDYKKKRQ---GK--IP------DEELRQAMEKFEESKEVAETSMHNLLET-DIEQVSQLSALVDAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHHcC---CC--Cc------hHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHH
Confidence 33444445677665554 21 11 3456666667877776666666666543 3678999999999999999
Q ss_pred HHHHHHHhhhHHHHH
Q 011187 88 KQGYELLHQMEPFIN 102 (491)
Q Consensus 88 ~~g~e~~~~l~~~~~ 102 (491)
+++++++.+|.+.+.
T Consensus 203 ~qa~eiL~~l~~~l~ 217 (223)
T cd07614 203 RQAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766554
No 140
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=90.75 E-value=2.3 Score=40.84 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHHHhc-cCCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHH
Q 011187 11 NGDGNFVLQAREKFLS-LRKST-----RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEA-VGGTMDAH 83 (491)
Q Consensus 11 d~~~~~yd~~~~ky~~-lsk~k-----~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~-l~~~~~a~ 83 (491)
+...-+||.+..++.+ +.+++ ++..+..++.+|..++..|...-=.+.-.|..+-... .+|+++ +..|+..|
T Consensus 120 ~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~-~~~~~~~~~~~~~~q 198 (216)
T cd07599 120 DHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALA-DEFLPPLFKSFYYIQ 198 (216)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3445678888888887 65553 3456677888888888888777777777777665443 455554 44888999
Q ss_pred HHHHHHHHHHHhh
Q 011187 84 LRFFKQGYELLHQ 96 (491)
Q Consensus 84 ~~~f~~g~e~~~~ 96 (491)
++||...|+-+..
T Consensus 199 l~~~~~~~~~l~~ 211 (216)
T cd07599 199 LNIYYTLHEYLQE 211 (216)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 141
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=3.5 Score=43.63 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 011187 13 DGNFVLQAREKFLSLRKSTR--MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQG 90 (491)
Q Consensus 13 ~~~~yd~~~~ky~~lsk~k~--~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g 90 (491)
..-+||.++..|.++-++++ ..-+.-++++|..+++.|+.-=-+|...|-.|=..+--=++..+-.++..+..||..+
T Consensus 134 Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 134 KLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred hhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 34579999966666544443 3334458889999999998888788777776644433334667778888999999998
Q ss_pred HHHHhhhHHHHHHHHHH
Q 011187 91 YELLHQMEPFINQVLAY 107 (491)
Q Consensus 91 ~e~~~~l~~~~~~l~~~ 107 (491)
..+...|..-+.+|..+
T Consensus 214 skl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 214 SKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66666655555555543
No 142
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=88.93 E-value=8.1 Score=37.21 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 45 NARTSFEQARFNLVGALSNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 45 ~~Rk~f~~asldyv~~l~~lq~kk~~e~-le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
..|..-++.-+...+.-..++++++|-+ ++.++.+++....|+..+.+.+..
T Consensus 151 ~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~ 203 (219)
T PF08397_consen 151 TERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQE 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666677778899999985 899999999999999999887755
No 143
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=88.62 E-value=5.8 Score=37.45 Aligned_cols=90 Identities=10% Similarity=0.106 Sum_probs=72.5
Q ss_pred hhhhhhhHHHHHHHHHHhccCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRK------STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk------~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~ 81 (491)
+++|.+-..||.++.---..+. .+..+.++.+..++..+|..|.+...|.+.++..|..-|.--+-..|+.|=.
T Consensus 105 ~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqn 184 (204)
T cd07661 105 QRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQN 184 (204)
T ss_pred HHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889988877633442 2335667889999999999999999999999999998887777778888888
Q ss_pred HHHHHHHHHHHHHhhh
Q 011187 82 AHLRFFKQGYELLHQM 97 (491)
Q Consensus 82 a~~~~f~~g~e~~~~l 97 (491)
+...||......++.+
T Consensus 185 al~~y~~kt~~~~~~i 200 (204)
T cd07661 185 TLLQFWEKTSRTMATI 200 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889998887777654
No 144
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=88.35 E-value=5.3 Score=38.05 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 44 HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 44 ~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
..+|..|.+.+=|..++|..|+.++--+++..|.-|..|...||..+++.+++
T Consensus 157 q~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~ 209 (215)
T cd07659 157 QEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68889999999999999999999999999999999999999999999998863
No 145
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=88.32 E-value=3.7 Score=39.63 Aligned_cols=58 Identities=17% Similarity=0.385 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 40 EEDLHNARTSFEQARFNLVGA-LSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 40 ~~~L~~~Rk~f~~asldyv~~-l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
+.+|..+.-.|..+. +.... |..|.. -..+-+..|..|+.||+.||.++++.+.+|.+
T Consensus 160 e~elr~A~~kf~~~~-E~a~~~M~~il~-~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 160 EHELRVAQTEFDRQA-EVTRLLLEGISS-THVNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777777776644 43222 333321 12477899999999999999999999988765
No 146
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.95 E-value=2.5 Score=40.16 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 39 IEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 39 ~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
+..++.+++..|+.++-++...+...+.-|..+|-..|.+|...|..|+.+..+.++.+-|
T Consensus 139 l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 139 LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6667888999999999999899999999999999999999999999999999888776543
No 147
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=86.10 E-value=7.5 Score=42.50 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCCcceEEEEeC----C--eEEEEEeCCHHHHHHHHHHHH
Q 011187 277 SDLRFCFRIISP----T--KVYTLQAENTLDQMDWIEKIN 310 (491)
Q Consensus 277 ~~r~fcF~I~t~----~--rt~~lqAeSe~e~~~WI~ai~ 310 (491)
..+++.|.+.-- + ..+.|+|+|+.|++.||.||.
T Consensus 552 ~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 552 SSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 345777877642 2 379999999999999999885
No 148
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=86.08 E-value=1.2 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCcceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 278 ~r~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
...|-|.|..-+ .+|+|.|+|+.++++|++.|..+
T Consensus 97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 446778877665 36899999999999999999864
No 149
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=86.02 E-value=5.5 Score=40.62 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=35.1
Q ss_pred CCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 278 DLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 278 ~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
.|++||.|.+.. ...+|..|.+.|+..|-.++|.|+-.-.
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~eV 390 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFTEV 390 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhHHH
Confidence 578999999876 7899999999999999999999985443
No 150
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.34 E-value=11 Score=35.43 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011187 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQME 98 (491)
Q Consensus 36 l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~ 98 (491)
+.++..++..++..|...+-.....+..++..+..+|-..|..|...+..|++...++++.+.
T Consensus 154 i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 154 LEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566666777777777777778888888999999999999999999999999998887754
No 151
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.27 E-value=15 Score=35.21 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011187 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFI 101 (491)
Q Consensus 35 ~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~ 101 (491)
.+.+++.+|..++..|...+-.+--.|...+..|--+|-..+.+|+.++..|..+..+++..+-..+
T Consensus 136 ~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~ 202 (211)
T cd07598 136 IISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDI 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999888775543333
No 152
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=83.02 E-value=1.1 Score=45.57 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=21.4
Q ss_pred ceeEEEEEeecCCC----cccCceEEEEEEe
Q 011187 177 QTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (491)
Q Consensus 177 ~~~keGyL~Krs~~----~~k~WkrRwFvL~ 203 (491)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 282 ~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 282 VHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhhHHHHHHhhccCCCccccccchhheeecC
Confidence 46899999988643 3568999999985
No 153
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=82.33 E-value=1.6 Score=44.98 Aligned_cols=27 Identities=44% Similarity=0.822 Sum_probs=20.0
Q ss_pred ceeEEEEEeecCCC-----cccCceEEEEEEe
Q 011187 177 QTIKQGYLSKRSSN-----LRADWKRRFFVLD 203 (491)
Q Consensus 177 ~~~keGyL~Krs~~-----~~k~WkrRwFvL~ 203 (491)
.++|+|+|.||... .+..||+|||.|.
T Consensus 302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred chhhhhHhhhccccCCCCcccccccceeeecC
Confidence 36899999988631 2336999999873
No 154
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=81.54 E-value=0.84 Score=46.62 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=21.4
Q ss_pred cceeEEEEEeecCCC----cccCceEEEEEEe
Q 011187 176 VQTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (491)
Q Consensus 176 ~~~~keGyL~Krs~~----~~k~WkrRwFvL~ 203 (491)
..++|+|++.||..+ .++.||||||.|+
T Consensus 284 ~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 284 PVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred chhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 457899999887533 3568999999873
No 155
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=81.50 E-value=21 Score=34.03 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
.+...++..++..+....=+....+...+..|..++-+.|.+|-..|..||+.+.+.++.+..
T Consensus 136 ~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~ 198 (201)
T cd07622 136 QQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888999999998888888899999999999999999999999999999999888876543
No 156
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=81.48 E-value=19 Score=34.62 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=63.8
Q ss_pred hhhhhHHHHHHHHHHhccCCC--CCchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011187 10 FNGDGNFVLQAREKFLSLRKS--TRMDVAV-------VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTM 80 (491)
Q Consensus 10 Fd~~~~~yd~~~~ky~~lsk~--k~~~~l~-------E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~ 80 (491)
++.++...+...+++.++..+ .+++.+. ++...+..+++.|...+=..-..+...+..|..+|-..|..|.
T Consensus 137 ~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 137 YQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555 2233343 4444455566667777666667888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhH
Q 011187 81 DAHLRFFKQGYELLHQME 98 (491)
Q Consensus 81 ~a~~~~f~~g~e~~~~l~ 98 (491)
..+..+.++..++++.+-
T Consensus 217 ~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 217 ESQIEYQKKMLEAWETFL 234 (236)
T ss_pred HHHHHHHHHHHHHHHhHc
Confidence 999999999998887653
No 157
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=81.29 E-value=1.1 Score=45.68 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=20.7
Q ss_pred ceeEEEEEeecCCC----cccCceEEEEEEe
Q 011187 177 QTIKQGYLSKRSSN----LRADWKRRFFVLD 203 (491)
Q Consensus 177 ~~~keGyL~Krs~~----~~k~WkrRwFvL~ 203 (491)
.++|+|+|.||..+ .++.||||||.|+
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecC
Confidence 46899999986432 3467999999985
No 158
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.09 E-value=17 Score=34.15 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 39 IEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 39 ~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
...++..++..|....=+....+...+.-|..++-+.|.+|-..|..||..+.+.++.+.|
T Consensus 124 l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 124 LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3446678888888888888889999999999999999999999999999999888876543
No 159
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=80.74 E-value=17 Score=34.91 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011187 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQM 97 (491)
Q Consensus 36 l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l 97 (491)
+++.+.....+++.|...+=..-..|..++..|..+|-..|..|+.++..+++...+.++.+
T Consensus 152 i~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 152 LEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677788888887777899999999999999999999999999999988877654
No 160
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=80.47 E-value=14 Score=37.21 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=61.4
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
++.+..--+||.++.++....+ |+.-.++..+|..+-..|-.+.=+-|..|..|- ..-++++.|..|..+|+.||
T Consensus 199 kkV~~sRL~~D~~R~~~k~~~~---pekee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl--~~~e~l~~Lk~lv~AQl~Yh 273 (289)
T PF10455_consen 199 KKVENSRLQFDAARANLKNKAK---PEKEEQLRVELEQAEDEFVSATEEAVEVMKEVL--DNSEPLRLLKELVKAQLEYH 273 (289)
T ss_pred HHHHHHHHHHHHHHHHhcccCC---cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHH
Confidence 4555556678888888766322 222223455566666677777767677777553 44567899999999999999
Q ss_pred HHHHHHHhhhHHHH
Q 011187 88 KQGYELLHQMEPFI 101 (491)
Q Consensus 88 ~~g~e~~~~l~~~~ 101 (491)
+.+.+.++.+-+.+
T Consensus 274 k~aae~L~~~~~~l 287 (289)
T PF10455_consen 274 KKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998765543
No 161
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=79.42 E-value=0.71 Score=50.62 Aligned_cols=100 Identities=9% Similarity=-0.134 Sum_probs=61.2
Q ss_pred CCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 174 GKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 174 ~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
+...+.+-|||.++...+ +.|+++||++.++. +.||+.+.+.+.+.....
T Consensus 255 ~~~~~s~~k~lkrr~~v~-k~gqi~~y~~~~~~-~~~p~s~~d~~s~~~~~~---------------------------- 304 (936)
T KOG0248|consen 255 WTQLTSRIKSLKRRYVVF-KNGQISFYRKHNNR-DEEPASKIDIRSVTKLEQ---------------------------- 304 (936)
T ss_pred hhcchHHHHHHHhHheee-ccceEEEEEcCCCc-cccccCcccccccceeec----------------------------
Confidence 334456789999887655 89999999997555 666777766433221111
Q ss_pred cccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
..|.+-.-.......+.| ...++.+-++...-+++||.+.+........+
T Consensus 305 ------------~~~s~~fqli~~t~~~~~----~~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~~ 354 (936)
T KOG0248|consen 305 ------------QGAAYAFQLITSTDKMNF----MTESERTTHDWVTILSAAIKATTLREMASRVT 354 (936)
T ss_pred ------------cchhHHhhhhhhceeEEE----eccChhhhhhhHHHHHHHHHHHhccchhhhcC
Confidence 011111100001112223 34567888999999999999999887555444
No 162
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=78.58 E-value=16 Score=36.75 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011187 69 RFELLEAVGGTMDAHLRFFKQGYELLHQME 98 (491)
Q Consensus 69 ~~e~le~l~~~~~a~~~~f~~g~e~~~~l~ 98 (491)
.+|.+..|..++++++.|+++..++++.|+
T Consensus 203 d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~ 232 (366)
T KOG1118|consen 203 DVEQVSQLSALIQAQLDFHRQSTQILQELQ 232 (366)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999988876643
No 163
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=75.98 E-value=20 Score=35.12 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
..++.+|.-+...|-..+ +.-..|-+=-..-+..-+.+|.+|+.+|.+||.++|..|-+
T Consensus 199 e~aEqelRvaQ~EFDrQa-EiTrLLLEGIsstH~nhLrCL~dFVeaQmtyYAQcyq~MlD 257 (375)
T KOG3725|consen 199 EQAEQELRVAQAEFDRQA-EITRLLLEGISSTHNNHLRCLRDFVEAQMTYYAQCYQLMLD 257 (375)
T ss_pred hHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665554 22222111123345566889999999999999999998755
No 164
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=75.64 E-value=34 Score=33.08 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhccCCCCCchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 14 GNFVLQAREKFLSLRKSTRMDVAV-------VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 14 ~~~yd~~~~ky~~lsk~k~~~~l~-------E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+.......++...+....+++.+. +.+..+..+++.|...+-..-..|..++..+..+|-..|..|+..+..+
T Consensus 129 ~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~ 208 (224)
T cd07623 129 QQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNT 208 (224)
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333443 4444455667777777666667888899999999999999999999999
Q ss_pred HHHHHHHHhhhHH
Q 011187 87 FKQGYELLHQMEP 99 (491)
Q Consensus 87 f~~g~e~~~~l~~ 99 (491)
.+...+.++.+-|
T Consensus 209 q~~~~~~We~~~p 221 (224)
T cd07623 209 QQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHhcc
Confidence 9998888877654
No 165
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=74.50 E-value=4 Score=44.28 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=39.0
Q ss_pred eEeecCcceeecC--CCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 261 HTVNLLTSTIKPD--ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 261 ~~i~l~~~~v~~~--~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..|.+..+.+.+. ....|..+.|.++-....|+|.|++++-.+.|++.|..|..
T Consensus 541 ~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 541 ATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVS 596 (623)
T ss_pred cccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence 3455666666532 12235567777777778999999999999999999987654
No 166
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=73.81 E-value=40 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.428 Sum_probs=34.7
Q ss_pred CCCcceEEEEe--------CCeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 277 SDLRFCFRIIS--------PTKVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 277 ~~r~fcF~I~t--------~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
.+-.+.++|+. |.++|.||+.+.+-+...|.+|++.|....
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 45578999986 457999999999999999999999886543
No 167
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.72 E-value=0.037 Score=56.40 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 278 ~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+.|.|.|.+.+..|.|.|.+..-+..||.|++...
T Consensus 79 q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT~ 114 (593)
T KOG4807|consen 79 QRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTV 114 (593)
T ss_pred HhccceeecccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 568999999999999999999999999999998543
No 168
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=72.94 E-value=2.9 Score=45.21 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCcceEEEEeCCeEEEEEeCC------------HHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPTKVYTLQAEN------------TLDQMDWIEKINGVI 313 (491)
Q Consensus 278 ~r~fcF~I~t~~rt~~lqAeS------------e~e~~~WI~ai~~ai 313 (491)
..+|||+|.|.. +.+|--++ ..-.+.|-.||+.+.
T Consensus 477 ~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 477 TNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 458999999988 45555565 444788999888764
No 169
>PRK12495 hypothetical protein; Provisional
Probab=72.07 E-value=2.4 Score=40.57 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=27.2
Q ss_pred HHHHHHc--ccCCCcccCCCCCCCCceeeccceeEecccccc
Q 011187 393 PIDLLRR--VYGNNKCADCGASEPDWASLNLGVLICIQCSGV 432 (491)
Q Consensus 393 ~~~~l~~--~~~N~~C~dCg~~~p~w~s~n~gv~~C~~Csgi 432 (491)
+-..|++ .+.+..|.+||.+=|. + -|+.+|..|..+
T Consensus 30 ma~lL~~gatmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 30 MSELLLQGATMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHhhcccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 3344443 3589999999999883 2 599999999765
No 170
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=70.05 E-value=0.23 Score=59.58 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=71.4
Q ss_pred eEEEEEeecC-------CCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 179 IKQGYLSKRS-------SNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 179 ~keGyL~Krs-------~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
..+|+|+.+- +...+.|..-||++.. +.+.+|++.+....+-. ...
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e-~el~fykD~k~~~a~ve-----------------------~~~--- 2352 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIRE-KELGFYKDAKKDLASVE-----------------------LLV--- 2352 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHh-ccchhhcccCcccccch-----------------------hhc---
Confidence 4689997431 1145789999999964 44556787665321000 000
Q ss_pred cccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 252 VHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.+...+.+..+.|....+..++.+.|.+..+. ..|.|||.++++|..|+.++..++..++.
T Consensus 2353 ------r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~~lk 2414 (2473)
T KOG0517|consen 2353 ------RGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAEALK 2414 (2473)
T ss_pred ------cCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHHHhh
Confidence 11122334445555545566788999999765 78999999999999999999999987763
No 171
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=69.82 E-value=35 Score=32.25 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011187 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYEL 93 (491)
Q Consensus 14 ~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~ 93 (491)
.-+||....+.-+ +..++.++.+++..|...--.|.-.|..+-....--+-..+.+|+..|.+||...++-
T Consensus 115 llDYdr~~~~~~k---------~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~ 185 (195)
T cd07589 115 LLDYERYKEKKER---------GGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKR 185 (195)
T ss_pred hccHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457766666443 2346788999999998888888888888866665555667789999999999998876
Q ss_pred H
Q 011187 94 L 94 (491)
Q Consensus 94 ~ 94 (491)
+
T Consensus 186 ~ 186 (195)
T cd07589 186 A 186 (195)
T ss_pred h
Confidence 4
No 172
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=69.49 E-value=2.5 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=28.1
Q ss_pred CCcccCCCCCCCCceeeccceeEecccccc-ccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGV-HRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~Csgi-Hr~ 435 (491)
+..|..|+.....+.+.+-++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 568999998878899999999999999987 876
No 173
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.33 E-value=61 Score=31.80 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 011187 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (491)
Q Consensus 10 Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~ 89 (491)
=|..|-+|+.+.+- +.+ + .+-++..+.++.+..+.+.-..=+....+...+.-|..||-..+.+|-+.|..||+.
T Consensus 155 RdqkQ~d~E~l~E~-l~~---r-re~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~ 229 (240)
T cd07667 155 RDQVQAEYEAKLEA-VAL---R-KEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 229 (240)
T ss_pred HHHHHHHHHHHHHH-HHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788775554 433 2 233556677777777888777777778899999999999999999999999999999
Q ss_pred HHHHHhhh
Q 011187 90 GYELLHQM 97 (491)
Q Consensus 90 g~e~~~~l 97 (491)
..+.++.+
T Consensus 230 ~~~~We~~ 237 (240)
T cd07667 230 CLTAWESI 237 (240)
T ss_pred HHHHHHHH
Confidence 88877654
No 174
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=68.09 E-value=0.9 Score=49.56 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=26.8
Q ss_pred eEEEEEeecCCC--cccCceEEEEEEecCceEEEEecCCC
Q 011187 179 IKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWS 216 (491)
Q Consensus 179 ~keGyL~Krs~~--~~k~WkrRwFvL~~~g~L~Yyk~~~~ 216 (491)
..+|||+++..+ ....|+|-||||.++- ||.|.++..
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~-l~~y~n~~~ 601 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDP-LLNYRNHRV 601 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCch-hhhhhhhhh
Confidence 468999976544 3457999999997555 777776655
No 175
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=65.34 E-value=14 Score=38.39 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=33.9
Q ss_pred cceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 280 RFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 280 ~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.-||+|.+|+ .++.|.|.+.++.+.|..||..++..++.
T Consensus 236 nR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~ 276 (506)
T KOG3551|consen 236 NRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLT 276 (506)
T ss_pred cceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHH
Confidence 5589999998 58999999999999999999998865543
No 176
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=64.97 E-value=28 Score=33.96 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=45.9
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAK---KRFELLEAVGGTMDAH 83 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~k---k~~e~le~l~~~~~a~ 83 (491)
|+.|+..-..+.++..||..-++.|.-+-++ +..+.+++|.+ .+-=+||++|+..+.- -.+..|+.++++|+.-
T Consensus 137 Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~--EKy~~m~~KL~-~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~l 213 (237)
T cd07685 137 KSQYRSLAKDSAQAKRKYQEASKDKDRDKAK--EKYVKSLWKLY-ALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSL 213 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5667777777888888888877666544333 23344444444 3445888888777643 3344567777766653
No 177
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=64.91 E-value=85 Score=30.45 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011187 64 VEAKKRFE-LLEAVGGTMDAHLRFFKQGYELLHQMEPFI 101 (491)
Q Consensus 64 lq~kk~~e-~le~l~~~~~a~~~~f~~g~e~~~~l~~~~ 101 (491)
+++|++|- |++.++.+++....||..+.+++...-|.+
T Consensus 181 ~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w 219 (223)
T cd07605 181 LEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLW 219 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 35555554 589999999999999999998887644433
No 178
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=64.89 E-value=7.2 Score=40.38 Aligned_cols=107 Identities=19% Similarity=0.343 Sum_probs=61.5
Q ss_pred ceeEEEEEeecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
.+-.=|||-++-+. ..+.|+.-+..|+...+|.|-.-+..+....
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws---------------------------------- 336 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWS---------------------------------- 336 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhc----------------------------------
Confidence 34556999977433 4577999999999888777754443321100
Q ss_pred cccceeEeecCcceeec-----CCCCCCCcceEEEEeCC----eEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 256 KSVARHTVNLLTSTIKP-----DADQSDLRFCFRIISPT----KVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~-----~~~~~~r~fcF~I~t~~----rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+.+...|....+-. .....+-...|.+.|.. .++.|.+|+..|+..|...|-+.-..+-..
T Consensus 337 --~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae~ 407 (506)
T KOG3551|consen 337 --RPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAEL 407 (506)
T ss_pred --ChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111000000 00001123467777765 599999999999999999886655544433
No 179
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=64.59 E-value=0.3 Score=54.30 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 278 ~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.-+..|.|+++-|+..++|++..+|..||.+++..-
T Consensus 59 n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q 94 (1099)
T KOG1170|consen 59 NPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQ 94 (1099)
T ss_pred CCCCCeeEecccHHhhhhccchhHHHHhhccccchh
Confidence 346678899999999999999999999999987654
No 180
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.42 E-value=1e+02 Score=30.07 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=47.1
Q ss_pred chhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 33 MDVAVVIEEDL-------HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 33 ~~~l~E~~~~L-------~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
++.+.++.+++ ..+++.|...+=..=..|..++..|.-+|-..+..|+.++..+=+...++++.|-|
T Consensus 158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444455554 45566666666544567888888888999999999999999877777777666544
No 181
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=64.29 E-value=2.2 Score=28.61 Aligned_cols=27 Identities=26% Similarity=0.704 Sum_probs=16.8
Q ss_pred CcccCCCCCC-CCceeeccceeEecccc
Q 011187 404 NKCADCGASE-PDWASLNLGVLICIQCS 430 (491)
Q Consensus 404 ~~C~dCg~~~-p~w~s~n~gv~~C~~Cs 430 (491)
..|.+||.+- -+|..-+|+.-||..|.
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 4799999975 47999999999999994
No 182
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=64.19 E-value=7 Score=37.91 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=27.3
Q ss_pred ccCCCcccCCCCCCC-CceeeccceeEecccccc
Q 011187 400 VYGNNKCADCGASEP-DWASLNLGVLICIQCSGV 432 (491)
Q Consensus 400 ~~~N~~C~dCg~~~p-~w~s~n~gv~~C~~Csgi 432 (491)
.|.-..|+.||..++ .+.+...|.++|.+|...
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 466779999998654 677889999999999864
No 183
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=61.49 E-value=5.9 Score=26.89 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=22.1
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSG 431 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~Csg 431 (491)
.|..|..|++. |...+=|-+.|..|-.
T Consensus 7 ~~~~C~~C~~~---~~~~~dG~~yC~~cG~ 33 (36)
T PF11781_consen 7 PNEPCPVCGSR---WFYSDDGFYYCDRCGH 33 (36)
T ss_pred CCCcCCCCCCe---EeEccCCEEEhhhCce
Confidence 35679999988 7777889999999943
No 184
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=60.44 E-value=5.8 Score=27.81 Aligned_cols=27 Identities=37% Similarity=0.748 Sum_probs=19.8
Q ss_pred cccCCCCCCCCceeeccceeEecccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSGV 432 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~Csgi 432 (491)
.|..||+.. .-..-.-|-++|..|.-|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLV 28 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BB
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCE
Confidence 699999976 334456799999999543
No 185
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=57.58 E-value=6.7 Score=40.44 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=18.2
Q ss_pred eeEEEEEe-ecCCC----cccCceEEEEEEe
Q 011187 178 TIKQGYLS-KRSSN----LRADWKRRFFVLD 203 (491)
Q Consensus 178 ~~keGyL~-Krs~~----~~k~WkrRwFvL~ 203 (491)
.+|+|.++ ||..+ ..+.||+|||.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 301 MVKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHHhccCCCCccccchhhheeeee
Confidence 34777776 65422 3468999999996
No 186
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=57.05 E-value=1.4e+02 Score=28.97 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 33 MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 33 ~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
+.-+.+++....++++.|.+.|=--=..|...+.++-.+|=..|+.|...+...-+..+++++.
T Consensus 150 ~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~ 213 (219)
T cd07621 150 NKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKN 213 (219)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888899999999988555578888999999999899999999888888877776643
No 187
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=56.97 E-value=88 Score=30.96 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=48.8
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCC---chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTR---MDVAVVIEEDLHNAR-TSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~---~~~l~E~~~~L~~~R-k~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~ 83 (491)
+.||.+--.||..+.-...++-.-+ ...+-|.+.+.++++ ..|++.+=|..++|.-|++-+--.+-..|.-|-.|.
T Consensus 227 ~qyEsARiEyDayR~Dle~~~l~P~~~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAi 306 (341)
T KOG3876|consen 227 KQYESARIEYDAYRTDLEELTLGPRDALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAI 306 (341)
T ss_pred HHhhhhhhhhhhhhhhHHHhcCCccccccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5677777788888777666643322 223345555666554 459999999999988876544333333333333444
Q ss_pred HHHHHH
Q 011187 84 LRFFKQ 89 (491)
Q Consensus 84 ~~~f~~ 89 (491)
..||.-
T Consensus 307 aAYfsG 312 (341)
T KOG3876|consen 307 AAYFSG 312 (341)
T ss_pred HHHhcc
Confidence 444443
No 188
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=56.43 E-value=8.9 Score=28.19 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=28.9
Q ss_pred CCcccCCCCCC-CCceeeccce-eEecccccccccCCC
Q 011187 403 NNKCADCGASE-PDWASLNLGV-LICIQCSGVHRNLGV 438 (491)
Q Consensus 403 N~~C~dCg~~~-p~w~s~n~gv-~~C~~CsgiHr~lg~ 438 (491)
...|..|+... |.|-.-..|- +||..|.--.+..|.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 56899999964 7898888886 999999776666544
No 189
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=55.96 E-value=5.4 Score=26.95 Aligned_cols=32 Identities=28% Similarity=0.795 Sum_probs=22.3
Q ss_pred ccCCCCC-CCCceeecccee-EecccccccccCC
Q 011187 406 CADCGAS-EPDWASLNLGVL-ICIQCSGVHRNLG 437 (491)
Q Consensus 406 C~dCg~~-~p~w~s~n~gv~-~C~~CsgiHr~lg 437 (491)
|..|+.. .|.|-....|-. ||..|.--+|..|
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~ 34 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG 34 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence 8899997 589998888888 9999966555443
No 190
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=54.81 E-value=1.8e+02 Score=28.17 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 011187 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (491)
Q Consensus 10 Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~ 89 (491)
|+-++..-+.++++ ..-+.+++..+.++++.|.+.|=--=..|..++.++..+|-..|+.|+...+...+.
T Consensus 135 ~enA~k~L~KaR~~---------~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~ 205 (218)
T cd07662 135 YENANKALDKARAK---------NKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKG 205 (218)
T ss_pred HHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554 133566788889999999999866567888888888888888999999888888888
Q ss_pred HHHHHhh
Q 011187 90 GYELLHQ 96 (491)
Q Consensus 90 g~e~~~~ 96 (491)
.++++..
T Consensus 206 ~~~~~~~ 212 (218)
T cd07662 206 NLQLLQS 212 (218)
T ss_pred HHHHHHH
Confidence 7777754
No 191
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=52.89 E-value=19 Score=39.25 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=55.5
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+.|+|+|.|+.+-+ =+||.|.|++.+.+.|+........
T Consensus 450 ~i~k~~~l~k~~~lf---~rkr~lllTn~~rll~~~~~~~~lk------------------------------------- 489 (604)
T KOG0592|consen 450 LILKEGALEKRQGLF---ARKRMLLLTNGPRLLYVDPQNLVLK------------------------------------- 489 (604)
T ss_pred hHHhHHHHHhhhhhh---hceeEEEecCCCeEEEEecccceec-------------------------------------
Confidence 456788888774433 3579999999888888874433211
Q ss_pred ccceeEeecC-cceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLL-TSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 257 ~~~~~~i~l~-~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+... .+.+. ......|-|.||.++|+|--. +.....|..+|...
T Consensus 490 ----~eip~~~~~~~e-----~~n~~~~~i~TP~k~~~l~d~-~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 490 ----GEIPWSPDLRVE-----LKNSSTFFIHTPNKVYYLEDP-EQRASVWCKAIETV 536 (604)
T ss_pred ----cccccCccccee-----eccCcceEEECCccceeccCc-ccchhHHHHhhhhh
Confidence 011111 11111 122456999999999988763 45778899999887
No 192
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=52.82 E-value=27 Score=32.17 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011187 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMD 81 (491)
Q Consensus 14 ~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~ 81 (491)
..+|++.+.|-.+ -+.+++.+....+|.++|..| -.-++|.+|+ ++.|..+-+.+.+++++.
T Consensus 3 ~~~~~q~~~RI~~---~rda~vaKDI~~DLl~~RHnY--FgrelC~~l~-IEYRNDVp~~DIlLd~~P 64 (183)
T PF15518_consen 3 DQKYNQFRARINA---ARDAEVAKDIDVDLLMARHNY--FGRELCKALN-IEYRNDVPLDDILLDVLP 64 (183)
T ss_dssp HHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHHH--HHHHHHHHHT-----SS--HHHHHHHHST
T ss_pred HHHHHHHHHHHHh---cCChHHhhhhhHHHHHHHhHH--HHHHHHHHhC-chhhcCCcHHHHHHHHcC
Confidence 4678888877543 567899999999999999998 4456666665 489999999999988877
No 193
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=52.20 E-value=7.9 Score=37.72 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=27.0
Q ss_pred ccCCCcccCCCCCCC-CceeeccceeEeccccc
Q 011187 400 VYGNNKCADCGASEP-DWASLNLGVLICIQCSG 431 (491)
Q Consensus 400 ~~~N~~C~dCg~~~p-~w~s~n~gv~~C~~Csg 431 (491)
.|.-..|+-||.+.. .|.+..-|.++|..|..
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~~ 178 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECGD 178 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCcccccccC
Confidence 456679999999865 78899999999999973
No 194
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=52.05 E-value=4.3 Score=31.20 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=23.5
Q ss_pred ccCCCcccCCCCCCC--CceeeccceeEeccccccc
Q 011187 400 VYGNNKCADCGASEP--DWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 400 ~~~N~~C~dCg~~~p--~w~s~n~gv~~C~~CsgiH 433 (491)
.++...|.|||.+=| .+.- ..|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~a-~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARREA-LPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHhh-cCCcCCcHHHHhhc
Confidence 456789999999755 3322 33889999997643
No 195
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=51.71 E-value=3.8e+02 Score=29.80 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 278 ~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+++.|-|+... .-|.|.+.+++-.+.||+++.-|++.
T Consensus 474 ~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SN 513 (865)
T KOG2996|consen 474 TWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSN 513 (865)
T ss_pred eeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhc
Confidence 467889888654 47899999999999999999887754
No 196
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.91 E-value=3.1e+02 Score=28.19 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011187 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFEL 72 (491)
Q Consensus 14 ~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~ 72 (491)
.+.|+.-+.++++..---.+...++--.+|+.+-..|+.++.+|...++.+..+---.+
T Consensus 155 ~~~~~~~~~~~L~~P~lG~~Re~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~ 213 (320)
T TIGR01834 155 DQLYRKNLSSFLSMPALGYSREMQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAAL 213 (320)
T ss_pred HHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999987766665556667777888889999999999999998875543333
No 197
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=48.76 E-value=7.8 Score=25.98 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=15.2
Q ss_pred CcccCCCCCCCCcee---eccceeEeccccccc
Q 011187 404 NKCADCGASEPDWAS---LNLGVLICIQCSGVH 433 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s---~n~gv~~C~~CsgiH 433 (491)
+.|..||.+- .+.. -+.-=.+|..|.-||
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEE
Confidence 4788999862 2211 244567899999888
No 198
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=48.04 E-value=2.6e+02 Score=27.05 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 36 l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
+.+++..+.++.+.|.+.|=--=..|...+.++-.+|=..|..|....+...+..++++..
T Consensus 152 v~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~ 212 (218)
T cd07663 152 VKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888999999888555578888888888888888888888888877777776643
No 199
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=47.41 E-value=98 Score=29.47 Aligned_cols=54 Identities=7% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 41 EDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL 94 (491)
Q Consensus 41 ~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~ 94 (491)
.++.+.++.|..-+--.-..|+..+..+..+|-..|..|+..+..||++-.+-+
T Consensus 139 ~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl 192 (199)
T cd07626 139 AELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKL 192 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777776666788888888888888888888888888887755444
No 200
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.29 E-value=2.6e+02 Score=27.52 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=54.6
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
|+++ +.+|.+|+...+--... +. +. .++..++.+.-..-++++=++=..+.+.+..|.-+|-..+.+|+..+..
T Consensus 155 lk~R-~~~Q~~le~k~e~l~k~---~~-dr-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~ 228 (243)
T cd07666 155 IKRR-DQIQAELDSKVEALANK---KA-DR-DLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNIS 228 (243)
T ss_pred HHHH-HHHHHHHHHHHHHHHhh---hh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 56777887766554442 21 11 2333333333333334444455677888888999999999999999999
Q ss_pred HHHHHHHHHhh
Q 011187 86 FFKQGYELLHQ 96 (491)
Q Consensus 86 ~f~~g~e~~~~ 96 (491)
+++++...++.
T Consensus 229 ~~~~~~~~We~ 239 (243)
T cd07666 229 YYEECLATWES 239 (243)
T ss_pred HHHHHHHHHHH
Confidence 99998776654
No 201
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=45.95 E-value=3e+02 Score=26.90 Aligned_cols=61 Identities=11% Similarity=-0.021 Sum_probs=36.9
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTR--MDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAK 67 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~--~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~k 67 (491)
++.|+++......+..+|-...++.+ ...+..+-..+..+...-+.+.=||+.+|+..+..
T Consensus 132 Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~ 194 (237)
T cd07657 132 KSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEH 194 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888899999877654332 11122233333444444455666788777766533
No 202
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=44.57 E-value=2.3 Score=50.00 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred ceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 268 STIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 268 ~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
|-+.+.-.+..++..|++.+.+ -.+.|||++.++|-.|++.++...
T Consensus 995 cltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 995 CLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred chhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 4443322345678999999998 689999999999999999886544
No 203
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=44.37 E-value=3.1e+02 Score=26.71 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=30.9
Q ss_pred HHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 60 ALSNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 60 ~l~~lq~kk~~e~-le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
.=-.+++|++|-| ++.-+.+.+....|+..|++++.+
T Consensus 180 k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~ 217 (232)
T cd07646 180 KTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345678888877 689999999999999999999965
No 204
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.09 E-value=24 Score=37.15 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=21.6
Q ss_pred eeEecccccccccCCCC----cccceec----ccCCCCCC-HHHHHHHHH
Q 011187 423 VLICIQCSGVHRNLGVH----ISKVRSL----TLDVKVWE-PSVLNLFQS 463 (491)
Q Consensus 423 v~~C~~CsgiHr~lg~~----is~Vks~----~ld~~~w~-~~~~~~~~~ 463 (491)
..||+.|-.+=-.+|+| --+|-.- -+|. .|+ ++|+.++..
T Consensus 38 fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~-~WtadEEilLLea 86 (438)
T KOG0457|consen 38 FDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDP-SWTADEEILLLEA 86 (438)
T ss_pred cchhHHHHhcccccCCCCCCCCceeecCCCCCCCCC-CCChHHHHHHHHH
Confidence 46888887544444444 2223221 1222 598 567777765
No 205
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=43.83 E-value=2.7e+02 Score=26.72 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hhhhhhHHHHHHHHHHHHHH-
Q 011187 10 FNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSN-VE--AKKRFELLEAVGGTMDAHLR- 85 (491)
Q Consensus 10 Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~-lq--~kk~~e~le~l~~~~~a~~~- 85 (491)
++.++.-.-.-++.|+ .++--.+-++||.|.+++-+|..++.. ++ .+++-..++..-.-+.....
T Consensus 87 ~~~~~~~l~~pL~~f~-----------k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~ 155 (207)
T cd07634 87 IQNANDVLIAPLEKFR-----------KEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQN 155 (207)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHH
Confidence 4444444444455444 455556779999999999999988876 32 33334445555555555444
Q ss_pred HHHHHHHHH
Q 011187 86 FFKQGYELL 94 (491)
Q Consensus 86 ~f~~g~e~~ 94 (491)
|.+...|.+
T Consensus 156 F~~~~ldYv 164 (207)
T cd07634 156 FYEASLEYV 164 (207)
T ss_pred HHHHHHHHH
Confidence 444444444
No 206
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=43.82 E-value=1.6e+02 Score=34.86 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=31.0
Q ss_pred EEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCC
Q 011187 283 FRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQT 321 (491)
Q Consensus 283 F~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~ 321 (491)
|.+-.-+..|.|.|++..+++.|++.|..+-...++...
T Consensus 656 ~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~~~ 694 (1029)
T KOG4305|consen 656 YLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLERND 694 (1029)
T ss_pred eeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhhhc
Confidence 333344579999999999999999999999877776543
No 207
>PRK11019 hypothetical protein; Provisional
Probab=43.02 E-value=4.9 Score=33.06 Aligned_cols=38 Identities=21% Similarity=0.581 Sum_probs=27.0
Q ss_pred CCCcccCCCCCCC--CceeeccceeEecccccccccCCCCc
Q 011187 402 GNNKCADCGASEP--DWASLNLGVLICIQCSGVHRNLGVHI 440 (491)
Q Consensus 402 ~N~~C~dCg~~~p--~w~s~n~gv~~C~~CsgiHr~lg~~i 440 (491)
+-..|.|||.+=| .+.-+. ++..|++|...+-..+.|.
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~P-~a~~Cv~Cq~~~E~~~k~~ 74 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAIP-GVRLCVACQQEKDLQQAAF 74 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhcC-CccccHHHHHHHHHHHhHh
Confidence 4579999999755 343333 7899999998765554443
No 208
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.27 E-value=41 Score=38.34 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=38.9
Q ss_pred ecCcceee-cCCCCCCCcceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 264 NLLTSTIK-PDADQSDLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 264 ~l~~~~v~-~~~~~~~r~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
++..+.|- ......++.|.|.|.... -.|.|.|++.+|..+|+.+|+.+...+-.
T Consensus 857 d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~t 915 (1267)
T KOG1264|consen 857 DLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADT 915 (1267)
T ss_pred cccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhh
Confidence 34444443 323345778899887543 57999999999999999999988755443
No 209
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=41.70 E-value=85 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 291 VYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 291 t~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
-+++.|+|++-.+.=|.+|++.|..+.
T Consensus 206 H~~Isadt~eki~~Ai~vienli~~av 232 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLIQSAV 232 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHhhc
Confidence 456779999999999999988887654
No 210
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=39.35 E-value=11 Score=33.60 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=26.1
Q ss_pred cCCCcccCCCCCCCCceeeccceeEec-cccccccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICI-QCSGVHRN 435 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~-~CsgiHr~ 435 (491)
|--+.|+-|| -..-|.++|.|.-.|. .|-++|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 4446999999 5556899999988875 68777754
No 211
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=36.72 E-value=17 Score=35.81 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.4
Q ss_pred cCCCcccCCCCCCC-CceeeccceeEecccc
Q 011187 401 YGNNKCADCGASEP-DWASLNLGVLICIQCS 430 (491)
Q Consensus 401 ~~N~~C~dCg~~~p-~w~s~n~gv~~C~~Cs 430 (491)
|.=..|+.||.+.+ ...+.-.|-++|.+|+
T Consensus 152 ~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 152 PNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred cchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 45678999999865 7999999999999998
No 212
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=36.39 E-value=1.9e+02 Score=28.36 Aligned_cols=56 Identities=7% Similarity=0.245 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011187 40 EEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLH 95 (491)
Q Consensus 40 ~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~ 95 (491)
..++...++.-.-.+.-....|+-+...+..+|-..|-.|+..|..||++-.+-++
T Consensus 175 ~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe 230 (237)
T PF10456_consen 175 QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLE 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444456788888888999999999999999999988655443
No 213
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.26 E-value=3.8e+02 Score=25.40 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011187 38 VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLH 95 (491)
Q Consensus 38 E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~ 95 (491)
.++....++++.|...|=--=..|...+.++-.+|=..|..|+..+...-+..++++.
T Consensus 136 ~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 136 QAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556677777776644445677777777777777777777777766666655553
No 214
>PHA00080 DksA-like zinc finger domain containing protein
Probab=35.87 E-value=10 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.675 Sum_probs=22.8
Q ss_pred cCCCcccCCCCCCC--CceeeccceeEeccccccc
Q 011187 401 YGNNKCADCGASEP--DWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 401 ~~N~~C~dCg~~~p--~w~s~n~gv~~C~~CsgiH 433 (491)
++...|.+||.+=| .|.-+ .|+..|+.|...+
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a~-P~~~~Cv~Cq~~~ 62 (72)
T PHA00080 29 PSATHCEECGDPIPEARREAV-PGCRTCVSCQEIL 62 (72)
T ss_pred CCCCEecCCCCcCcHHHHHhC-CCccCcHHHHHHH
Confidence 45668999999754 34333 3788899998754
No 215
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=35.62 E-value=3.7 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.744 Sum_probs=16.7
Q ss_pred cccCCCCCCC-CceeeccceeEeccccccc
Q 011187 405 KCADCGASEP-DWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 405 ~C~dCg~~~p-~w~s~n~gv~~C~~CsgiH 433 (491)
.|.+||.+-| .-.-+.-|..+|+.|+..|
T Consensus 5 ~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 5 ICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp B-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 4999998633 1122223788999997654
No 216
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=35.31 E-value=2.8e+02 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred HHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011187 60 ALSNVEAKKRFELLEAVG-GTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRM 126 (491)
Q Consensus 60 ~l~~lq~kk~~e~le~l~-~~~~a~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~ 126 (491)
-...|+.++.||+++.++ -|+..|........+. ++|...+..+++..+.+-..|...+
T Consensus 166 l~~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~~--------~~L~~~l~~l~~~q~~~w~~L~~l~ 225 (237)
T PF04192_consen 166 LTYRLKSRRDFELVQAYLSVFLKVHGDVIMESEEE--------EELREALEELREAQESEWKRLDDLF 225 (237)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCch--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999998665 3444444333222111 4455555555555544444444443
No 217
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=35.06 E-value=4.9e+02 Score=26.28 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-------------HHHHHH
Q 011187 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELL-------------EAVGGT 79 (491)
Q Consensus 13 ~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~l-------------e~l~~~ 79 (491)
....|+..+.+++....=-...-.++--.+|..+-..|+.++.+|...+..+..+---++. ..+-.|
T Consensus 137 ~~~~~~~~~~~~l~~P~lG~~Re~q~~~~~l~~a~~~~~~a~~ey~~~l~~~~~~a~~~~~~~l~~~~~~g~~~~s~re~ 216 (293)
T PF09712_consen 137 WKEQYRETLGRWLQMPALGPSREHQEQLQALFDAWMEYQRASQEYQAQLSEAWMKAFERMMEKLQERAEEGEQIKSWREF 216 (293)
T ss_pred HHHHHHHHHHHHHcCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHH
Confidence 4778888999998776555544456677778888899999999999988888643222222 234456
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011187 80 MDAHLRFFKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 80 ~~a~~~~f~~g~e~~~~l~~~~~~l~~ 106 (491)
++.+..-+...++.+-.-+.|.+....
T Consensus 217 ~d~Wi~~ae~~~~~~~~S~ef~~~~g~ 243 (293)
T PF09712_consen 217 YDIWIDAAEEAYEELFRSEEFAQAYGQ 243 (293)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 666666666655555444445444443
No 218
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.67 E-value=4.1e+02 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHhccCCCC
Q 011187 11 NGDGNFVLQAREKFLSLRKST 31 (491)
Q Consensus 11 d~~~~~yd~~~~ky~~lsk~k 31 (491)
+.+++.|.+++++|.++..-.
T Consensus 38 ~eaqeQF~sALe~f~sl~~~~ 58 (201)
T PF11172_consen 38 QEAQEQFKSALEQFKSLVNFD 58 (201)
T ss_pred HHHHHHHHHHHHHHHHhhCCC
Confidence 345666666666666655443
No 219
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=21 Score=29.33 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=24.6
Q ss_pred HHcccCCCcccCCCCCC-------C-Cc---------eeeccceeEeccccc
Q 011187 397 LRRVYGNNKCADCGASE-------P-DW---------ASLNLGVLICIQCSG 431 (491)
Q Consensus 397 l~~~~~N~~C~dCg~~~-------p-~w---------~s~n~gv~~C~~Csg 431 (491)
.++.++-..|++||.+- | .. ++-.||-.+|..|..
T Consensus 28 ~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 28 EKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred eeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 45677888999999951 1 11 234589999999953
No 220
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=39 Score=27.65 Aligned_cols=32 Identities=19% Similarity=0.537 Sum_probs=24.5
Q ss_pred cccCCCcccCCCCCCCCceeeccceeEecccccc
Q 011187 399 RVYGNNKCADCGASEPDWASLNLGVLICIQCSGV 432 (491)
Q Consensus 399 ~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~Csgi 432 (491)
....--.|..|+.+ .---+..||..|..|-..
T Consensus 31 ~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg~~ 62 (89)
T COG1997 31 QQRAKHVCPFCGRT--TVKRIATGIWKCRKCGAK 62 (89)
T ss_pred HHhcCCcCCCCCCc--ceeeeccCeEEcCCCCCe
Confidence 33456789999998 344677899999999653
No 221
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.93 E-value=2.8e+02 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSN 63 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~ 63 (491)
.++-..+-+.||.|.+++-+|-.++..
T Consensus 97 k~dL~~vKE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 97 KEDIKKVKESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678888888888888877665
No 222
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=4e+02 Score=29.36 Aligned_cols=112 Identities=7% Similarity=0.064 Sum_probs=50.0
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
|...|-+++......+.|+..+=+.++.+.+++.++ +.+.|+.-.+-+=-+.-.+.++.++.. .+++.+-..|+...+
T Consensus 571 frEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~-~~eer~~i~e~a~~La~R~eea~e~qe-~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 571 FREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSY-CREERKSLREMAERLADRYEEAKEKQE-DLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhcccc
Confidence 334445555555556667766666666666665442 233343333322223333333333221 234444455544433
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHH
Q 011187 86 FFKQGYELLHQMEPFINQVLAYAQQSRECSDYEQ 119 (491)
Q Consensus 86 ~f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~ 119 (491)
.-......=.+|..-+.-+..+++.+....|-.+
T Consensus 649 ~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 649 ELPVLSDAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred cCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333323333444444444445555544444433
No 223
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.31 E-value=4e+02 Score=25.39 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHH-HHHHHHH
Q 011187 36 AVVIEEDLHNARTSFEQARFNLVGALSNVE---AKKRFELLEAVGGTMDAHLRFF-KQGYELL 94 (491)
Q Consensus 36 l~E~~~~L~~~Rk~f~~asldyv~~l~~lq---~kk~~e~le~l~~~~~a~~~~f-~~g~e~~ 94 (491)
+.++-.++-++||.|.+++-+|-.++...- .++|-+.++....-+......| +...+.+
T Consensus 98 ~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv 160 (202)
T cd07606 98 ADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLM 160 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778999999999999998665543 3345455665555555544433 4444433
No 224
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=33.20 E-value=3.9e+02 Score=25.91 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.7
Q ss_pred HHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 62 SNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 62 ~~lq~kk~~e~-le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
-.++++++|-| ++.=+.+......|+..|++++.+
T Consensus 180 AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 180 ALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568888877 689999999999999999999965
No 225
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=32.65 E-value=4.5e+02 Score=25.17 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=24.6
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011187 34 DVAVVIEEDLH-NARTSFEQARFNLVGALSNVE 65 (491)
Q Consensus 34 ~~l~E~~~~L~-~~Rk~f~~asldyv~~l~~lq 65 (491)
..+.++-...- +.||.|.+++=||=.++..+.
T Consensus 96 sflK~dlr~~K~D~KK~FeK~skDyE~kl~K~a 128 (213)
T cd07640 96 SLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLE 128 (213)
T ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 34555666666 889999999999988887775
No 226
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=32.40 E-value=24 Score=25.33 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=19.2
Q ss_pred cccCCCCCCCCceeeccceeEeccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSG 431 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~Csg 431 (491)
.|.=|+.+.++= -.=+|.|+|.+|-.
T Consensus 1 ~CiiC~~~~~~G-I~I~~~fIC~~CE~ 26 (46)
T PF10764_consen 1 KCIICGKEKEEG-IHIYGKFICSDCEK 26 (46)
T ss_pred CeEeCCCcCCCC-EEEECeEehHHHHH
Confidence 478899988763 33359999999943
No 227
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=31.28 E-value=23 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=25.2
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.|..|.-||.+.. ...||+..|..|.+..|-
T Consensus 2 ~~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 2 DTHFCAVCSDYAS---GYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 3567999997653 578999999999998765
No 228
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=31.11 E-value=31 Score=24.56 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=17.3
Q ss_pred cccCCCCCCCCceeeccceeEecc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQ 428 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~ 428 (491)
+|.+|+....-|+++.-|-..|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 599999888777776666555543
No 229
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.66 E-value=5.2e+02 Score=25.24 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=42.6
Q ss_pred chhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 33 MDVAVVIEEDL-------HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 33 ~~~l~E~~~~L-------~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
++.+.++..++ ..+++.|...+--.=..|...+..|--+|=..+..|+.++...=+...++++.+-|
T Consensus 158 ~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp 231 (234)
T cd07665 158 PDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLP 231 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555455554 45555555555444457777777777788778888888887766666666555443
No 230
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.47 E-value=32 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=22.2
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSG 431 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~Csg 431 (491)
-+.|..||..... ..+-.+|.|..|.-
T Consensus 28 Sq~C~~CG~~~~~--~~~~r~~~C~~Cg~ 54 (69)
T PF07282_consen 28 SQTCPRCGHRNKK--RRSGRVFTCPNCGF 54 (69)
T ss_pred ccCccCccccccc--ccccceEEcCCCCC
Confidence 3589999998877 67778999999943
No 231
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=30.43 E-value=28 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.671 Sum_probs=23.3
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
+.|.-||.+.. ...||+..|..|.+..|-
T Consensus 1 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 1 KICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCCeeCCCcCc---ceEECcceeeeehheehh
Confidence 35888987644 458999999999998875
No 232
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=30.35 E-value=29 Score=29.26 Aligned_cols=31 Identities=35% Similarity=0.841 Sum_probs=25.6
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
++..|.-||.+.. ...||+..|..|.+..|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 4668999998654 568999999999998875
No 233
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=29.70 E-value=32 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.707 Sum_probs=24.9
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
|..|.-||.+.. ...||+..|..|.+..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd07163 6 DIPCKVCGDRSS---GKHYGIYACDGCSGFFKR 35 (92)
T ss_pred CCCCcccCCcCc---ccEECceeeeeeeeEEee
Confidence 667999998654 468999999999998765
No 234
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=29.64 E-value=10 Score=30.10 Aligned_cols=33 Identities=24% Similarity=0.662 Sum_probs=22.3
Q ss_pred CCCcccCCCCCCCC-ceeeccceeEecccccccc
Q 011187 402 GNNKCADCGASEPD-WASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 402 ~N~~C~dCg~~~p~-w~s~n~gv~~C~~CsgiHr 434 (491)
+...|.|||.+=|. =.-.--|+..|+.|...+-
T Consensus 33 ~~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E 66 (73)
T PRK13715 33 PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 (73)
T ss_pred CcccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHH
Confidence 34589999997551 1222348899999987543
No 235
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=29.21 E-value=31 Score=36.64 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=21.5
Q ss_pred ceeEEEEEeecCCC-cccCceEEEEEEec
Q 011187 177 QTIKQGYLSKRSSN-LRADWKRRFFVLDS 204 (491)
Q Consensus 177 ~~~keGyL~Krs~~-~~k~WkrRwFvL~~ 204 (491)
..+|+|+++-+..+ ..|.|.++|++|.+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~ 35 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGS 35 (429)
T ss_pred cccccCccchhhhhhccccccccceeeec
Confidence 35789999866554 45789999999963
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.96 E-value=57 Score=37.32 Aligned_cols=37 Identities=30% Similarity=0.635 Sum_probs=27.6
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEec
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRK 213 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~ 213 (491)
....+|+|.|+.+.. ..+.|.+.||||.... |+|-..
T Consensus 472 ~~nsvk~GiLy~kd~-vdheWt~h~fvlt~~k-l~ys~e 508 (1267)
T KOG1264|consen 472 HKNSVKQGILYMKDP-VDHEWTRHYFVLTDAK-LSYSDE 508 (1267)
T ss_pred chhhhhcceEEEecC-CCCceeeeEEEEecce-eEeehh
Confidence 344589999997744 4488999999998665 666543
No 237
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=28.82 E-value=27 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.720 Sum_probs=25.2
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+..|.-||.+.. ...||+..|..|.+..|-
T Consensus 4 ~~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 4 EVIPCKICGDKSS---GIHYGVITCEGCKGFFRR 34 (95)
T ss_pred cccCCcccCCcCc---ceEECceeehhhHHhhHH
Confidence 4567999998654 468999999999998764
No 238
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=28.76 E-value=21 Score=26.48 Aligned_cols=33 Identities=27% Similarity=0.719 Sum_probs=25.7
Q ss_pred cccCCCCCC-CCceeec-cceeEecccccccccCC
Q 011187 405 KCADCGASE-PDWASLN-LGVLICIQCSGVHRNLG 437 (491)
Q Consensus 405 ~C~dCg~~~-p~w~s~n-~gv~~C~~CsgiHr~lg 437 (491)
.|..|+... |.|-.-. -+..||..|.--.+..|
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~ 35 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG 35 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence 499999965 7888765 78899999976666555
No 239
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=28.52 E-value=26 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.625 Sum_probs=23.9
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ...||+..|..|.+..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 5 RLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 46999997654 468999999999998764
No 240
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=28.40 E-value=5.3e+02 Score=25.23 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=34.1
Q ss_pred chhhhhhhHHHHHHHHHHhccCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKS-TRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKK---RFELLEAVGGTMDA 82 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~-k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk---~~e~le~l~~~~~a 82 (491)
|+.|+........+++||.....+ |+.+-+ -..+..+-.....+.=+|++.|+..+..+ .+..|+.+++.++.
T Consensus 133 K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka---~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~ 209 (234)
T cd07686 133 KCSYRQLTKEVNSAKEKYKDAVAKGKETEKA---RERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQK 209 (234)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhcccchHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777654322 221111 11111111222334446777776665333 33445555555544
No 241
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=27.89 E-value=21 Score=24.58 Aligned_cols=14 Identities=43% Similarity=1.035 Sum_probs=11.6
Q ss_pred eEecccccccccCC
Q 011187 424 LICIQCSGVHRNLG 437 (491)
Q Consensus 424 ~~C~~CsgiHr~lg 437 (491)
+-|+.||.+|-.-+
T Consensus 2 yYCi~Cs~~h~e~~ 15 (41)
T PF13119_consen 2 YYCINCSEIHHEKG 15 (41)
T ss_pred EEEEEhHHhHHhhc
Confidence 57999999997744
No 242
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=27.64 E-value=41 Score=34.22 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=21.5
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiH 433 (491)
....|.+||..+. =....-|-.+|.+|.-|-
T Consensus 10 ~~~~Cp~Cg~~~i-v~d~~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 10 EKLVCPECGSDKL-IYDYERGEIVCADCGLVI 40 (310)
T ss_pred cCCcCcCCCCCCe-eEECCCCeEeecccCCcc
Confidence 3457999997432 223457999999997654
No 243
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.26 E-value=5.9e+02 Score=24.80 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=29.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 011187 32 RMDVAVVIEEDLHNARTSFEQARFN-------LVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQ 89 (491)
Q Consensus 32 ~~~~l~E~~~~L~~~Rk~f~~asld-------yv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~ 89 (491)
+|+.+.|+..+|.++.+.-+.+... ....+...+..+.-+|-..+..|+-.+..+-.+
T Consensus 155 ~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk 219 (230)
T cd07625 155 NPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERK 219 (230)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777766654444443 333333333333344444444444444444333
No 244
>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins. SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].
Probab=27.15 E-value=1.6e+02 Score=23.79 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHhhhhhhHHHHHH
Q 011187 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSF-----EQARFNLV-GALSNVEAKKRFELLEAVG 77 (491)
Q Consensus 13 ~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f-----~~asldyv-~~l~~lq~kk~~e~le~l~ 77 (491)
.+..|+++.+||..+-..... ..+-.....|-.| +...|.|+ ++.|+-..+.+++|++.|+
T Consensus 5 ~~~qle~Lq~KY~GtG~~dTT----k~EW~tnihRDT~aS~~gH~~lL~Y~aia~ne~~~r~r~~ll~kM~ 71 (79)
T PF07189_consen 5 IQQQLEHLQSKYVGTGHADTT----KEEWLTNIHRDTYASIIGHPDLLEYFAIAENESKARVRFNLLEKMV 71 (79)
T ss_pred HHHHHHHHHHHhCCCCCCCcC----HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 467899999999987644321 1233344444444 55667776 4666667888899998876
No 245
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=27.13 E-value=96 Score=36.99 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCcceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 011187 278 DLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIASLLSFQ 320 (491)
Q Consensus 278 ~r~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~ 320 (491)
+.+--|-|.+.. -.|.|.|.|..|++.||+.|+.++...-.+.
T Consensus 683 d~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 683 DEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred cccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 334457777763 6899999999999999999999998765554
No 246
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=26.90 E-value=12 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.608 Sum_probs=20.9
Q ss_pred CcccCCCCCCC-CceeeccceeEeccccccc
Q 011187 404 NKCADCGASEP-DWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 404 ~~C~dCg~~~p-~w~s~n~gv~~C~~CsgiH 433 (491)
..|.+||.+=| .=.-..-+..+|++|.-.|
T Consensus 81 G~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~ 111 (120)
T COG1734 81 GICEECGEPIPEARLEARPTARLCIECQERA 111 (120)
T ss_pred cchhccCCcCCHHHHhhCcchHHHHHHHHHH
Confidence 47999999744 2222334788999998765
No 247
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=26.29 E-value=35 Score=25.76 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=18.5
Q ss_pred CcccCCCCCCCCceeeccceeEecccccccccC
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRNL 436 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~l 436 (491)
-.|+|||+.+.- -.--++-|.+|. ||.|
T Consensus 21 YiCgdC~~en~l---k~~D~irCReCG--~RIl 48 (62)
T KOG3507|consen 21 YICGDCGQENTL---KRGDVIRCRECG--YRIL 48 (62)
T ss_pred EEeccccccccc---cCCCcEehhhcc--hHHH
Confidence 489999997641 112478899993 5543
No 248
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=26.17 E-value=37 Score=24.08 Aligned_cols=23 Identities=26% Similarity=0.693 Sum_probs=17.2
Q ss_pred cccCCCCCCCCceeeccceeEecccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCS 430 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~Cs 430 (491)
.|.+||...... ..+.+-|.+|.
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCCC
Confidence 699999965432 45788999994
No 249
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=26.12 E-value=38 Score=27.65 Aligned_cols=28 Identities=21% Similarity=0.673 Sum_probs=23.0
Q ss_pred cccCCCCCCCCceeeccceeEeccccccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.|.-||.+.. ..+||+..|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (86)
T cd07157 2 TCQVCGEPAA---GFHHGAYVCEACKKFFMR 29 (86)
T ss_pred CCcccCCcCc---ccEECcceeeEeeeEEec
Confidence 4888997653 569999999999998875
No 250
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=25.75 E-value=27 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=24.6
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+.|.-||.+.. ...||+..|..|.+..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 3 QKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 457999997654 568999999999998765
No 251
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.54 E-value=5.6e+02 Score=23.93 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011187 41 EDLHNARTSFEQAR-FNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQM 97 (491)
Q Consensus 41 ~~L~~~Rk~f~~as-ldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l 97 (491)
+++.++.+.|...+ -..-..|...+.-|..++=+.+.+|-..+..|+.++.+.++.+
T Consensus 127 e~~~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~ 184 (187)
T cd07629 127 ESALVAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEA 184 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555553 4444677777788888888888888888888888877766554
No 252
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=24.75 E-value=51 Score=29.78 Aligned_cols=35 Identities=23% Similarity=0.621 Sum_probs=24.5
Q ss_pred HHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccC
Q 011187 393 PIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNL 436 (491)
Q Consensus 393 ~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~l 436 (491)
.++.+....+...|.-||.. +-++|..|.|-|+.+
T Consensus 89 lL~~~~~~~~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 89 LLKGIRARAGGGVCEGCGGA---------RFVPCSECNGSCKVF 123 (147)
T ss_pred HHhhcccccCCCCCCCCCCc---------CeEECCCCCCcceEE
Confidence 34443334456679999854 567899999999875
No 253
>cd06955 NR_DBD_VDR DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. VDR interacts with a VDR response element, a direct repeat of GGTTCA DNA site with 3 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. VDR is a member of the nuclear receptor (NR) superfamily that functions as classical endocrine receptors. VDR controls a wide range of biological activities including calcium metabolism, cell proliferation and differentiation, and immunomodulation. VDR is a high-affinity receptor for the biologically most active Vitamin D metabolite, 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). The binding of the ligand to the receptor induces a conformational change of the ligand binding domain (LBD) with consequent dissociation of core
Probab=24.59 E-value=45 Score=28.48 Aligned_cols=29 Identities=24% Similarity=0.739 Sum_probs=24.1
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ..+||+..|..|.+..|-
T Consensus 7 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (107)
T cd06955 7 RICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (107)
T ss_pred CCCeecCCcCc---ccEECcceeeeecceecc
Confidence 56999998654 468999999999998775
No 254
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=24.43 E-value=21 Score=26.16 Aligned_cols=44 Identities=27% Similarity=0.485 Sum_probs=24.4
Q ss_pred cccCCCCCCCCce--eeccceeEecccccccccCCCCcccceecccC
Q 011187 405 KCADCGASEPDWA--SLNLGVLICIQCSGVHRNLGVHISKVRSLTLD 449 (491)
Q Consensus 405 ~C~dCg~~~p~w~--s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld 449 (491)
.|+=||..-.-.- -+.=| +||.+|..--..+-..+..++++|++
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl~~~~~~~~~~~~~t~~ 46 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKLSGFFSDVKIKKNLTLE 46 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHhcCcccchhhhhhccHH
Confidence 4888888654332 34447 79999985333332223333445543
No 255
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=24.32 E-value=5.6e+02 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 011187 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFEL 72 (491)
Q Consensus 35 ~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~ 72 (491)
.+.+.+.++-.|| .+|+||..+-+==.-+-.+.
T Consensus 40 ~l~~a~~~iPDAr-----dRL~YVi~~TEqAA~rtLna 72 (214)
T PRK11166 40 AIEEAAEAIPDAR-----DRLDYVAQMTEQAAERVLNA 72 (214)
T ss_pred HHHHHHHhCCCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3456666677776 57888876554433333333
No 256
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.56 E-value=6.5e+02 Score=23.98 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHH-HHHHHHHHHHh
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNVEA--KKRFELLEAVGGTMDAHL-RFFKQGYELLH 95 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~lq~--kk~~e~le~l~~~~~a~~-~~f~~g~e~~~ 95 (491)
.|+--.+-++||.|.+++-+|..++...-. |++-.-++..-.-+.+.. .|.+...|.+-
T Consensus 97 k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~ 158 (200)
T cd07639 97 KEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYAL 158 (200)
T ss_pred HhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556789999999999999987765532 333434455554454444 44455555443
No 257
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=23.33 E-value=52 Score=21.85 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=21.1
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiH 433 (491)
...|-.||...--| -+-+..+|..|..++
T Consensus 3 ~~~C~~C~~~~i~~--~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNGIVN--KEDDYEVCIFCGSSF 31 (33)
T ss_pred ceEcCCCCCCeEEE--ecCCeEEcccCCcEe
Confidence 35788899876433 566888999997654
No 258
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=22.81 E-value=6.6e+02 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 59 GALSNVEAKKRFEL-LEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 59 ~~l~~lq~kk~~e~-le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
.+=..++++++|-| ++.-+.+-.-+..|...|.++++.
T Consensus 168 ~k~Al~eErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~ 206 (215)
T cd07644 168 QRAAELEEKRRYRFLAEKHYLLNNTFLQFQSRARGMLQT 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556788899888 578888888899999999999864
No 259
>PTZ00332 paraflagellar rod protein; Provisional
Probab=22.68 E-value=1e+03 Score=25.99 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH---HHHHH
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELL-HQMEPFINQVLAY---AQQSR 112 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~-~~l~~~~~~l~~~---l~~~r 112 (491)
+++++.|.+.++.|..+==+|++.+.++.+||-.. +.-++.+..++|...|+. +.|.|.+++-... |...+
T Consensus 412 q~L~elll~V~ke~Le~FR~lYltlGeL~yKKErR-----LEeLDRqIR~~hiqrE~amETlDPNAKkyseakkeLl~~r 486 (589)
T PTZ00332 412 QDLAALRLQVHKEHLEYFRMLYLTLGSLIYKKEKR-----LEEIDRNIRTTHIQLEFCVETFDPNAKKHADMKKELYKLR 486 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 66777788888998888889999999999987533 344566666666666665 5677776665443 33344
Q ss_pred HhHHHHHHHHH
Q 011187 113 ECSDYEQASLH 123 (491)
Q Consensus 113 ~~~~~~~~~l~ 123 (491)
+..+.+..-|.
T Consensus 487 ~~Ve~eI~~L~ 497 (589)
T PTZ00332 487 QGVEEELAMLK 497 (589)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 260
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=22.51 E-value=3.8e+02 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011187 44 HNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQME 98 (491)
Q Consensus 44 ~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~ 98 (491)
.++|..|-+.+=|.+.+|..|..|---++...|-.+......+++.+++.+++.-
T Consensus 287 QeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 287 QEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788889999999999999998888888888888888888999999998887543
No 261
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.38 E-value=5.8e+02 Score=24.32 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHH
Q 011187 73 LEAVGGTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSDY 117 (491)
Q Consensus 73 le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~ 117 (491)
.-.+++.+-....+|-..+|-+++++.-+++.+....+.+++-+.
T Consensus 53 ~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~ 97 (201)
T COG1422 53 AAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDM 97 (201)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 456677788888888889999999888888888877777665554
No 262
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.37 E-value=48 Score=23.21 Aligned_cols=25 Identities=28% Similarity=0.804 Sum_probs=17.8
Q ss_pred CCcccCCCCCCCCceeeccceeEecccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCS 430 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~Cs 430 (491)
+..|.+||.|--+ ..-|..+|..|.
T Consensus 17 ~~~Cp~C~~PL~~---~k~g~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMR---DKDGKIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEE---ecCCCEECCCCC
Confidence 6799999876332 234788898883
No 263
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.36 E-value=65 Score=32.94 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=25.3
Q ss_pred HHHcccCCCcccCCCCCCCCceeeccceeEecccccccc
Q 011187 396 LLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 396 ~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr 434 (491)
.+...|.| .|-.||.....|. ++|..|.+.|-
T Consensus 348 ~~~~~p~~-~c~~cg~~~~~~~------~~c~~c~~~~~ 379 (389)
T PRK11788 348 QLKRKPRY-RCRNCGFTARTLY------WHCPSCKAWET 379 (389)
T ss_pred HHhCCCCE-ECCCCCCCCccce------eECcCCCCccC
Confidence 34555665 4999999999995 69999998874
No 264
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.36 E-value=9.1e+02 Score=27.74 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011187 44 HNARTSFEQARFNLVGALSNV 64 (491)
Q Consensus 44 ~~~Rk~f~~asldyv~~l~~l 64 (491)
.+.|+.....+=.+.-++.++
T Consensus 585 ~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 585 QEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344433
No 265
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.23 E-value=88 Score=36.77 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=22.5
Q ss_pred cCCCcccCCCCCCCCceeeccc-----eeEeccc
Q 011187 401 YGNNKCADCGASEPDWASLNLG-----VLICIQC 429 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~g-----v~~C~~C 429 (491)
.+.+.|..||...+...|-+.| +..|.+|
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccc
Confidence 4788999999987777777666 4577777
No 266
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=22.14 E-value=37 Score=21.63 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=16.8
Q ss_pred CcccCCCCCCCCceeeccceeEeccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSG 431 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~Csg 431 (491)
+.|.-|+..-+.-.--+-..++|..|..
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 3688888876655555667899999964
No 267
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=21.59 E-value=70 Score=20.73 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=13.7
Q ss_pred CCCcccCCCCCC----CCceeeccceeEeccccccc
Q 011187 402 GNNKCADCGASE----PDWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 402 ~N~~C~dCg~~~----p~w~s~n~gv~~C~~CsgiH 433 (491)
.++.|.-||++- -.| ..+|..|...|
T Consensus 2 ~~rfC~~CG~~t~~~~~g~------~r~C~~Cg~~~ 31 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGW------ARRCPSCGHEH 31 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-------EEESSSS-EE
T ss_pred CCcccCcCCccccCCCCcC------EeECCCCcCEe
Confidence 468999999962 234 45788885543
No 268
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers. DNA-binding domain of Ecdysone receptor (EcR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with highly degenerate pseudo-palindromic response elements, resembling inverted repeats of 5'-AGGTCA-3' separated by 1 bp, upstream of the target gene and modulates the rate of transcriptional initiation. EcR is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. EcR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of EcR are ecdysteroids, the endogenous steroidal hormones found in invertebrates. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcRs h
Probab=21.43 E-value=44 Score=27.58 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=23.4
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ...||++.|..|.+..|-
T Consensus 2 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (91)
T cd07161 2 ELCLVCGDRAS---GYHYNALTCEGCKGFFRR 30 (91)
T ss_pred CCCeeCCCcCc---ceEECceeehhhHHHHHH
Confidence 35888997654 468999999999998764
No 269
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.37 E-value=7.7e+02 Score=24.04 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFF 87 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f 87 (491)
+.-||+..+.+.+.+.|.+ .-..+...|..|....-..+-.++.++..+---+-+.|..|.......-
T Consensus 150 k~~eK~~~K~~ka~~~Y~~------------~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~ 217 (261)
T cd07648 150 KEIEKAEAKLKKAQDEYKA------------LVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENH 217 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHhhhHHHHHHH
Q 011187 88 KQGYELLHQMEPFINQV 104 (491)
Q Consensus 88 ~~g~e~~~~l~~~~~~l 104 (491)
-.--...+++..-+..+
T Consensus 218 ~~~~~~~e~~~~~~~~i 234 (261)
T cd07648 218 SAVGQVHEEFKRQVDEL 234 (261)
T ss_pred chHHHHHHHHHHHHHhC
No 270
>cd06962 NR_DBD_FXR DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. FXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. FXR is a member of the nuclear receptor family of ligand activated transcription factors. Bile acids are endogenous ligands for FXRs. Upon binding of a ligand, FXR binds to FXR response element (FXRE), which is an inverted repeat of TGACCT spaced by one nucleotide, either as a monomer or as a heterodimer with retinoid X receptor (RXR), to regulate the expression of various genes involved in bile acid, lipid, and glucose metabolism. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, FXR has a central well conserved
Probab=21.37 E-value=54 Score=26.64 Aligned_cols=28 Identities=29% Similarity=0.731 Sum_probs=23.0
Q ss_pred cccCCCCCCCCceeeccceeEeccccccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.|.-||.+.. ...||+..|..|.+..|-
T Consensus 3 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (84)
T cd06962 3 LCVVCGDKAS---GYHYNALTCEGCKGFFRR 30 (84)
T ss_pred CCeecCCcCc---ceEECcceeecceeeeee
Confidence 5888997654 468999999999998875
No 271
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=21.36 E-value=4.7e+02 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 011187 66 AKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 66 ~kk~~e~le~l~~~~~a~~~ 85 (491)
.+|++.+|+.|..|+..-.+
T Consensus 31 NqKRV~LLdNL~~YI~~~Ms 50 (95)
T PF04363_consen 31 NQKRVLLLDNLSDYIKPDMS 50 (95)
T ss_pred hHHHHHHHHHHHHHccCCCC
Confidence 66888888888888876554
No 272
>cd06967 NR_DBD_TR2_like DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. TR2 and TR4 interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. TR4 and TR2 are orphan nuclear receptors; the physiological ligand is as yet unidentified. TR2 is abundantly expressed in the androgen-sensitive prostate. TR4 transcripts are expressed in many tissues, including central nervous system, adrenal gland, spleen, thyroid gland, and prostate. It has been shown that human TR2 binds to a wide spectrum of natural hormone response elements (HREs) with distinct affinities suggesting that TR2 may cross-talk with other gene expression regulation systems. The genes responding to TR2 or
Probab=21.20 E-value=58 Score=26.60 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=23.5
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+... ..||+..|..|.+..|-
T Consensus 4 ~~C~VCg~~~~g---~hyGv~sC~aC~~FFRR 32 (87)
T cd06967 4 ELCVVCGDKASG---RHYGAVSCEGCKGFFKR 32 (87)
T ss_pred CCCeecCCcCCc---CEeCcceEeeeeeEeee
Confidence 469999986543 58999999999998765
No 273
>cd07156 NR_DBD_VDR_like The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: vitamin D receptors (VDR), constitutive androstane receptor (CAR) and pregnane X receptor (PXR). VDR regulates calcium metabolism, cellular proliferation and differentiation. PXR and CAR function as sensors of toxic byproducts of cell metabolism and of exogenous chemicals, to facilitate their elimination. The DNA binding activity is regulated by their corresponding ligands. VDR is activated by Vitamin D; CAR and PXR respond to a diverse array of chemi
Probab=20.99 E-value=50 Score=25.87 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=21.1
Q ss_pred ccCCCCCCCCceeeccceeEeccccccccc
Q 011187 406 CADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 406 C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
|.-||.+.. ...||+..|..|.+..|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aC~~FFRR 27 (72)
T cd07156 1 CGVCGDRAT---GYHFNAMTCEGCKGFFRR 27 (72)
T ss_pred CCccCccCc---ccEECcceehhhhhhhch
Confidence 556776554 358999999999998775
No 274
>cd07169 NR_DBD_GCNF_like DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. GCNF is a transcription factor expressed in post-meiotic stages of developing male germ cells. In vitro, GCNF has the ability to bind to direct repeat elements of 5'-AGGTCA.AGGTCA-3', as well as to an extended half-site sequence 5'-TCA.AGGTCA-3'. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, GCNF has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=20.95 E-value=43 Score=27.61 Aligned_cols=31 Identities=26% Similarity=0.756 Sum_probs=25.1
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+..|.-||.+. ....||+..|..|.+..|-
T Consensus 5 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (90)
T cd07169 5 EQRTCLICGDRA---TGLHYGIISCEGCKGFFKR 35 (90)
T ss_pred cCCCCeecCCcC---cceEECcceehhhHHHHHH
Confidence 456799999865 3568999999999998765
No 275
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.91 E-value=7.6e+02 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNV 64 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~l 64 (491)
.++-.++-+.||.|.+++-+|-.++...
T Consensus 101 k~Dl~~vKe~kK~FdK~s~~~d~al~K~ 128 (215)
T cd07601 101 ESDLAEIMTLKELFKAASNDHDGVLSKY 128 (215)
T ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566677899999999999999866654
No 276
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=20.63 E-value=1.2e+02 Score=31.19 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=33.8
Q ss_pred CCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 277 SDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 277 ~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.-|.+.|+|..-+ -+=++++.+.++..+|+.+|..-|..+
T Consensus 222 klRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~L 263 (505)
T KOG3549|consen 222 KLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVGL 263 (505)
T ss_pred hhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHHH
Confidence 4567899999877 467899999999999999999888654
No 277
>cd06970 NR_DBD_PNR DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of the nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hing
Probab=20.61 E-value=64 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.696 Sum_probs=24.3
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
...|.-||.+.. ...||+..|..|.+..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd06970 6 GLLCRVCGDTSS---GKHYGIYACNGCSGFFKR 35 (92)
T ss_pred CCCCeecCCcCc---ccEECccEEeeeeeEeee
Confidence 346999998755 458999999999998865
No 278
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=20.47 E-value=73 Score=27.05 Aligned_cols=31 Identities=32% Similarity=0.701 Sum_probs=25.4
Q ss_pred ccCCCCCCCCceeeccc--eeEecccccccccCCC
Q 011187 406 CADCGASEPDWASLNLG--VLICIQCSGVHRNLGV 438 (491)
Q Consensus 406 C~dCg~~~p~w~s~n~g--v~~C~~CsgiHr~lg~ 438 (491)
|.+|+-- .|++-.-| |.-|.+|-=|||.=++
T Consensus 45 c~~~~~g--ewi~~~~G~~VwSC~dC~~iH~ke~~ 77 (112)
T COG2158 45 CENEELG--EWISDSNGRKVWSCSDCHWIHRKEGA 77 (112)
T ss_pred ccccccC--ceeEcCCCCEEeeccccceecccchH
Confidence 5566555 89999989 9999999999998654
No 279
>cd07172 NR_DBD_GR_PR DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers. DNA-binding domains of glucocorticoid receptor (GR) and progesterone receptor (PR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinate a single zinc atom. The DBD from both receptors interact with the same hormone response element (HRE), which is an imperfect palindrome GGTACAnnnTGTTCT, upstream of target genes and modulates the rate of transcriptional initiation. GR is a transcriptional regulator that mediates the biological effects of glucocorticoids and PR regulates genes controlled by progesterone. GR is expressed in almost every cell in the body and regulates genes controlling a wide variety of processes including the development, metabolism, and immune response of the organism. PR functions in a variety of biological processes including development of the mammary gland, regulating cell cycle progression, p
Probab=20.35 E-value=48 Score=26.52 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=23.5
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ..+||+..|..|.+..|-
T Consensus 3 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 31 (78)
T cd07172 3 KICLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (78)
T ss_pred CCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 46888997654 468999999999998764
No 280
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=20.28 E-value=83 Score=31.71 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=27.3
Q ss_pred cccCCCCCCC-CceeeccceeEecccccccccCCCCccccee
Q 011187 405 KCADCGASEP-DWASLNLGVLICIQCSGVHRNLGVHISKVRS 445 (491)
Q Consensus 405 ~C~dCg~~~p-~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks 445 (491)
.|.||....+ .-..-.-|..+|..|.-| ||-|+-.+.|
T Consensus 2 ~c~~C~~~~~~~V~d~~~gdtvC~~CGlV---l~~r~Id~~s 40 (308)
T KOG1597|consen 2 TCPDCKRHPENLVEDHSAGDTVCSECGLV---LEDRIIDEGS 40 (308)
T ss_pred CCCCCCCCCCCeeeeccCCceecccCCee---eccccccccc
Confidence 6999999877 444556799999999653 5666555554
No 281
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=20.28 E-value=7.9e+02 Score=23.73 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=26.6
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011187 33 MDVAVVIEEDLH-NARTSFEQARFNLVGALSNVE 65 (491)
Q Consensus 33 ~~~l~E~~~~L~-~~Rk~f~~asldyv~~l~~lq 65 (491)
...+.++-...- +.||.|.+++=||=.++..+.
T Consensus 95 ~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~e 128 (215)
T cd07641 95 DSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIE 128 (215)
T ss_pred HHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 445567777777 899999999999998888775
No 282
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=20.16 E-value=6.6e+02 Score=22.79 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011187 60 ALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSRECSDYEQASLH 123 (491)
Q Consensus 60 ~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~ 123 (491)
--..|+++++|++|+.- +.-.|+ ..+.+.++|.+..|...+.+.-..++-....|.
T Consensus 33 L~kvL~t~R~FeLvpe~-dl~~Aq-------~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ 88 (153)
T PF08287_consen 33 LTKVLQTTRHFELVPEP-DLQAAQ-------QSLRDEIEPQINHLLDKAEKHLEKLQRREETLK 88 (153)
T ss_pred HHHHHcccCcccccCHH-HHHHHH-------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33668899999998641 222222 245677888888877766555444333333333
No 283
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=20.02 E-value=43 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=14.3
Q ss_pred cccCCCCCCCCceeeccceeEecccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCS 430 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~Cs 430 (491)
.|++||+... .. ....+-|..|.
T Consensus 2 ~C~~Cg~~~~--~~-~~~~irC~~CG 24 (32)
T PF03604_consen 2 ICGECGAEVE--LK-PGDPIRCPECG 24 (32)
T ss_dssp BESSSSSSE---BS-TSSTSSBSSSS
T ss_pred CCCcCCCeeE--cC-CCCcEECCcCC
Confidence 5899999755 11 23455788884
Done!