Query 011187
Match_columns 491
No_of_seqs 464 out of 2253
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 02:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q13_A DCC-interacting protein 100.0 1.5E-40 5E-45 345.4 29.0 248 7-322 130-383 (385)
2 4h8s_A DCC-interacting protein 100.0 1.5E-40 5.2E-45 347.7 25.1 248 6-321 152-405 (407)
3 2crr_A Stromal membrane-associ 100.0 4.6E-34 1.6E-38 252.7 6.6 95 385-481 11-105 (141)
4 2iqj_A Stromal membrane-associ 100.0 4.5E-34 1.5E-38 250.7 5.8 94 386-481 10-103 (134)
5 2olm_A Nucleoporin-like protei 100.0 3.8E-33 1.3E-37 246.6 7.1 100 385-487 7-106 (140)
6 2owa_A Arfgap-like finger doma 100.0 2.8E-32 9.5E-37 239.7 5.6 87 391-479 24-110 (138)
7 3dwd_A ADP-ribosylation factor 100.0 3.5E-32 1.2E-36 239.1 5.0 87 389-477 24-110 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 9.1E-32 3.1E-36 238.9 5.1 90 390-480 16-105 (149)
9 3sub_A ADP-ribosylation factor 100.0 5.7E-31 2E-35 234.5 5.0 90 390-481 8-98 (163)
10 2p57_A GTPase-activating prote 100.0 1E-30 3.5E-35 230.0 5.8 89 390-479 24-112 (144)
11 3jue_A Arfgap with coiled-coil 100.0 3.7E-29 1.3E-33 258.1 7.9 95 385-481 27-121 (368)
12 3lju_X ARF-GAP with dual PH do 99.9 9E-28 3.1E-32 248.8 6.8 93 385-480 16-108 (386)
13 3o47_A ADP-ribosylation factor 99.9 6.9E-27 2.4E-31 237.6 5.7 91 388-480 22-112 (329)
14 2b0o_E UPLC1; arfgap, structur 99.9 7.6E-26 2.6E-30 226.9 6.6 95 389-485 28-122 (301)
15 1dcq_A PYK2-associated protein 99.9 5.5E-26 1.9E-30 225.3 5.4 94 390-485 4-97 (278)
16 3lvq_E ARF-GAP with SH3 domain 99.9 7.1E-26 2.4E-30 242.2 2.9 97 388-486 8-104 (497)
17 2q12_A DIP13 alpha, DCC-intera 99.9 1.5E-21 5E-26 192.4 16.8 124 7-130 130-255 (265)
18 2rlo_A Centaurin-gamma 1; spli 99.9 3.5E-21 1.2E-25 168.7 12.5 119 177-318 3-128 (128)
19 1wi1_A Calcium-dependent activ 99.8 1.9E-20 6.4E-25 162.2 12.3 97 177-314 7-110 (126)
20 2da0_A 130-kDa phosphatidylino 99.8 5.5E-20 1.9E-24 157.7 14.5 101 175-320 7-107 (114)
21 2rsg_A Collagen type IV alpha- 99.8 2.4E-19 8.1E-24 148.1 10.6 93 178-313 1-93 (94)
22 1v88_A Oxysterol binding prote 99.8 6.2E-19 2.1E-23 155.2 13.1 95 176-314 6-124 (130)
23 1x1f_A Signal-transducing adap 99.8 7.4E-19 2.5E-23 158.2 13.8 96 177-314 17-113 (149)
24 1pls_A Pleckstrin homology dom 99.8 2.2E-18 7.4E-23 147.0 14.9 99 177-317 4-104 (113)
25 2p0d_A RHO GTPase-activating p 99.8 1.6E-18 5.5E-23 152.2 13.8 110 177-316 11-126 (129)
26 2dhk_A TBC1 domain family memb 99.8 1.7E-18 5.8E-23 149.6 13.6 102 176-319 6-109 (119)
27 2d9x_A Oxysterol binding prote 99.8 7.4E-19 2.5E-23 152.0 11.3 102 176-319 6-109 (120)
28 2d9v_A Pleckstrin homology dom 99.8 2.3E-18 7.7E-23 151.3 14.6 107 175-314 5-114 (130)
29 1wgq_A FYVE, rhogef and PH dom 99.8 2.1E-18 7.2E-23 146.2 13.7 95 177-313 7-102 (109)
30 2dn6_A KIAA0640 protein; PH do 99.8 2.8E-18 9.6E-23 146.4 14.1 101 176-318 6-107 (115)
31 2coc_A FYVE, rhogef and PH dom 99.8 1.5E-18 5.1E-23 148.7 12.1 94 178-313 8-105 (112)
32 1v5p_A Pleckstrin homology dom 99.8 1.2E-18 4E-23 152.6 11.4 101 178-314 15-120 (126)
33 3cxb_B Pleckstrin homology dom 99.8 1.7E-18 5.8E-23 148.3 11.4 96 180-316 2-103 (112)
34 1wjm_A Beta-spectrin III; PH d 99.8 1.5E-18 5E-23 150.6 10.9 105 176-315 6-118 (123)
35 3aj4_A Pleckstrin homology dom 99.8 2.9E-18 1E-22 145.9 12.4 104 176-313 3-110 (112)
36 2cof_A Protein KIAA1914; PH do 99.8 1.1E-18 3.9E-23 147.7 9.6 94 176-313 6-100 (107)
37 2i5f_A Pleckstrin; PH domain, 99.8 5.5E-18 1.9E-22 143.2 13.7 97 176-313 5-108 (109)
38 1u5d_A SKAP55, SRC kinase-asso 99.8 3.5E-18 1.2E-22 143.7 12.4 99 177-316 2-107 (108)
39 1fao_A Dual adaptor of phospho 99.8 3.9E-18 1.3E-22 148.2 12.6 97 176-315 16-113 (126)
40 1upq_A PEPP1; PH domain, phosp 99.8 7.3E-18 2.5E-22 145.7 14.0 99 176-315 9-110 (123)
41 1unq_A RAC-alpha serine/threon 99.8 2E-18 6.7E-23 150.1 10.0 105 176-318 6-114 (125)
42 1v5u_A SBF1, SET binding facto 99.8 5E-18 1.7E-22 145.3 12.0 97 176-313 6-110 (117)
43 1v89_A Hypothetical protein KI 99.8 1E-17 3.5E-22 143.2 13.8 97 176-314 6-112 (118)
44 2yry_A Pleckstrin homology dom 99.7 1.4E-17 4.8E-22 143.7 14.4 97 176-313 20-119 (122)
45 2dkp_A Pleckstrin homology dom 99.7 7.5E-18 2.6E-22 146.6 12.7 99 175-314 18-119 (128)
46 1fgy_A GRP1; PH domain, signal 99.7 1E-17 3.4E-22 145.4 13.1 96 177-315 4-121 (127)
47 1x05_A Pleckstrin; PH domain, 99.7 1.3E-17 4.3E-22 145.6 13.7 98 176-314 16-120 (129)
48 2cod_A Centaurin-delta 1; ARF 99.7 1.1E-17 3.7E-22 143.2 12.9 95 176-316 6-101 (115)
49 3rcp_A Pleckstrin homology dom 99.7 3.9E-18 1.3E-22 142.9 9.6 94 180-316 1-95 (103)
50 2d9y_A Pleckstrin homology dom 99.7 1.7E-17 5.9E-22 141.9 13.3 97 176-313 9-108 (117)
51 4a6h_A Phosphatidylinositol 4, 99.7 1.2E-17 4.1E-22 144.9 12.0 97 178-313 6-117 (120)
52 1u5f_A SRC-associated adaptor 99.7 1.4E-17 4.9E-22 149.2 12.8 102 176-318 15-123 (148)
53 2lul_A Tyrosine-protein kinase 99.7 2E-17 7E-22 151.2 13.9 99 176-314 13-121 (164)
54 1x1g_A Pleckstrin 2; PH domain 99.7 5.7E-18 1.9E-22 147.7 9.6 98 176-314 16-124 (129)
55 1wg7_A Dedicator of cytokinesi 99.7 1.6E-17 5.3E-22 149.1 12.5 103 176-319 16-129 (150)
56 1btn_A Beta-spectrin; signal t 99.7 1.1E-17 3.7E-22 140.6 10.1 98 180-312 1-106 (106)
57 2w2x_D 1-phosphatidylinositol- 99.7 4.9E-18 1.7E-22 148.0 8.1 108 176-316 10-121 (124)
58 2y7b_A Actin-binding protein a 99.7 1.6E-17 5.4E-22 145.9 10.4 101 177-316 4-130 (134)
59 1dyn_A Dynamin; signal transdu 99.7 5.1E-17 1.7E-21 139.2 13.0 95 177-312 11-115 (125)
60 1eaz_A Tandem PH domain contai 99.7 1.7E-17 5.9E-22 143.6 10.1 99 176-316 12-113 (125)
61 1btk_A Bruton'S tyrosine kinas 99.7 1.6E-17 5.5E-22 152.7 10.1 101 177-314 2-132 (169)
62 2j59_M RHO-GTPase activating p 99.7 3E-17 1E-21 150.2 11.5 99 178-314 3-111 (168)
63 1u5e_A SRC-associated adaptor 99.7 5E-17 1.7E-21 154.7 13.0 99 176-315 104-209 (211)
64 1dro_A Beta-spectrin; cytoskel 99.7 3.9E-17 1.3E-21 141.6 9.8 106 177-315 7-120 (122)
65 3pp2_A RHO GTPase-activating p 99.7 2.8E-16 9.6E-21 136.9 12.3 109 177-314 7-123 (124)
66 3a8p_A T-lymphoma invasion and 99.7 3.4E-16 1.2E-20 153.7 13.9 108 176-318 9-128 (263)
67 3lju_X ARF-GAP with dual PH do 99.6 1E-15 3.5E-20 158.3 11.8 100 176-316 267-374 (386)
68 3tfm_A Myosin X; split PH doma 99.6 1.6E-15 5.5E-20 146.0 11.9 96 176-314 56-155 (228)
69 1qqg_A IRS-1, insulin receptor 99.6 8.4E-16 2.9E-20 151.0 9.6 100 176-316 8-114 (264)
70 2dtc_A RAL guanine nucleotide 99.6 8E-15 2.8E-19 127.5 13.7 103 179-314 2-112 (126)
71 2r09_A Cytohesin-3; autoinhibi 99.6 3.6E-15 1.2E-19 152.3 12.7 95 177-314 212-328 (347)
72 3tca_A Amyloid beta A4 precurs 99.5 1.7E-14 5.9E-19 143.0 12.0 101 174-313 164-275 (291)
73 2fjl_A 1-phosphatidylinositol- 99.4 4.3E-13 1.5E-17 119.0 11.5 127 179-314 2-148 (150)
74 2ys3_A UNC-112-related protein 99.4 5.4E-13 1.9E-17 116.2 9.8 97 177-312 8-110 (137)
75 2d9w_A Docking protein 2; PH d 99.4 3.2E-12 1.1E-16 109.3 13.1 101 176-313 10-120 (127)
76 3a8n_A TIAM-1, T-lymphoma inva 99.4 4.3E-13 1.5E-17 131.9 8.7 107 176-317 9-127 (279)
77 2rov_A RHO-associated protein 99.4 1.4E-12 5E-17 112.2 9.5 96 180-314 3-115 (117)
78 4ejn_A RAC-alpha serine/threon 99.3 3.4E-12 1.2E-16 133.9 8.6 102 177-316 5-110 (446)
79 3hk0_A Growth factor receptor- 99.2 3.3E-11 1.1E-15 117.1 12.1 101 175-314 129-240 (256)
80 4gmv_A RAS-associated and plec 99.2 4.2E-11 1.4E-15 117.8 11.4 100 176-314 156-266 (281)
81 1w1g_A HPDK1, 3-phosphoinositi 99.1 6.9E-10 2.4E-14 98.3 12.6 94 176-319 50-144 (151)
82 4f7h_A Fermitin family homolog 99.0 9.3E-10 3.2E-14 98.2 10.7 97 177-312 46-148 (173)
83 4bbk_A Kindlin-1, fermitin fam 99.0 9.7E-10 3.3E-14 97.0 10.2 97 177-312 25-127 (165)
84 3mpx_A FYVE, rhogef and PH dom 99.0 5.3E-09 1.8E-13 109.4 17.5 100 177-319 243-342 (434)
85 2d9z_A Protein kinase C, NU ty 98.8 3.4E-08 1.2E-12 84.5 11.7 102 176-314 6-123 (129)
86 2coa_A Protein kinase C, D2 ty 98.8 7.6E-09 2.6E-13 88.3 7.3 96 176-313 6-118 (125)
87 2vrw_B P95VAV, VAV1, proto-onc 98.7 4.5E-06 1.5E-10 86.4 24.4 100 177-317 233-338 (406)
88 1zc3_B Exocyst complex protein 98.6 1.1E-06 3.6E-11 74.9 13.5 105 177-318 7-111 (113)
89 3ky9_A Proto-oncogene VAV; cal 98.4 2.5E-05 8.5E-10 84.8 22.4 99 178-317 406-510 (587)
90 2dfk_A Collybistin II; DH doma 98.1 0.00011 3.7E-09 76.0 19.1 105 177-319 256-368 (402)
91 2pz1_A RHO guanine nucleotide 98.1 0.00013 4.4E-09 76.8 19.7 105 177-319 333-445 (466)
92 1v61_A RAC/CDC42 guanine nucle 98.1 1.1E-05 3.9E-10 70.2 9.0 56 260-315 71-127 (132)
93 3qwm_A Iqsec1, IQ motif and SE 98.0 5.2E-05 1.8E-09 66.4 11.8 105 177-317 12-125 (140)
94 1xcg_A PDZ-rhogef, RHO guanine 98.0 0.0003 1E-08 71.5 19.5 111 177-315 252-367 (368)
95 1v5m_A SH2 and PH domain-conta 98.0 7.2E-05 2.5E-09 64.2 11.4 104 175-315 15-131 (136)
96 3t06_A PDZ-rhogef, RHO guanine 98.0 0.00034 1.2E-08 72.4 18.9 113 176-316 293-410 (418)
97 3odw_A RHO guanine nucleotide 97.9 0.00022 7.6E-09 76.5 16.2 115 176-318 410-528 (536)
98 2z0v_A SH3-containing GRB2-lik 97.8 8.3E-05 2.8E-09 71.5 10.7 87 7-105 142-228 (240)
99 3p6a_A RHO guanine nucleotide 97.8 0.0015 5.1E-08 66.5 20.4 113 177-316 258-373 (377)
100 1dbh_A Protein (human SOS 1); 97.8 0.00054 1.8E-08 69.3 16.8 103 177-314 246-349 (354)
101 3tfm_A Myosin X; split PH doma 97.7 3.7E-05 1.3E-09 73.4 5.6 39 176-216 19-57 (228)
102 2lg1_A A-kinase anchor protein 97.6 0.00036 1.2E-08 64.3 11.6 103 176-316 69-174 (185)
103 1txd_A RHO guanine nucleotide 97.6 0.0012 4.1E-08 67.5 16.6 117 176-319 255-374 (385)
104 1zww_A SH3-containing GRB2-lik 97.4 0.0008 2.7E-08 65.2 11.5 88 7-106 158-245 (256)
105 3ml4_A Protein DOK-7; tyrosine 97.4 0.00033 1.1E-08 65.5 8.2 95 178-311 9-110 (224)
106 1foe_A T-lymphoma invasion and 97.4 0.031 1.1E-06 56.7 23.0 60 260-319 303-371 (377)
107 1mai_A Phospholipase C delta-1 97.4 0.00082 2.8E-08 58.3 9.4 39 278-316 83-123 (131)
108 1kz7_A Guanine nucleotide exch 97.3 0.031 1.1E-06 56.3 21.9 109 177-318 209-329 (353)
109 3jzy_A Intersectin 2; C2 domai 97.2 6.2E-05 2.1E-09 79.9 0.0 116 177-320 252-368 (510)
110 1nty_A Triple functional domai 97.1 0.0035 1.2E-07 62.1 12.5 103 177-316 202-310 (311)
111 3ksy_A SOS-1, SON of sevenless 97.1 0.018 6E-07 66.6 20.1 105 177-317 443-549 (1049)
112 2fic_A Bridging integrator 1; 97.0 0.0043 1.5E-07 59.5 11.0 97 9-105 152-250 (251)
113 2z0q_A XPLN, RHO guanine nucle 96.9 0.0029 9.9E-08 63.6 10.0 35 279-313 307-345 (346)
114 2rgn_B RHOA/RAC/CDC42 exchange 96.9 0.0088 3E-07 60.4 12.9 106 177-316 206-320 (354)
115 1uru_A Amphiphysin; endocytosi 96.7 0.01 3.6E-07 56.4 11.7 96 11-106 139-238 (244)
116 3v5w_A G-protein coupled recep 95.8 0.032 1.1E-06 61.2 10.6 96 176-316 557-654 (689)
117 4a3a_A Amphiphysin; structural 95.7 0.18 6.1E-06 48.2 14.1 94 13-106 142-237 (243)
118 3zvr_A Dynamin-1; hydrolase, D 95.6 1.2 4.1E-05 49.4 22.0 91 178-309 540-640 (772)
119 4avm_A Bridging integrator 2; 95.4 0.18 6.3E-06 47.9 13.2 96 11-106 135-232 (237)
120 1z87_A Alpha-1-syntrophin; pro 95.1 0.054 1.8E-06 52.5 8.1 53 262-314 207-262 (263)
121 2adz_A Alpha-1-syntrophin; pro 94.5 0.089 3E-06 47.7 7.6 53 261-314 121-177 (178)
122 1fho_A UNC-89; pleckstrin homo 92.9 0.27 9.2E-06 41.6 7.3 101 176-315 8-113 (119)
123 1i4d_A Arfaptin 2, partner of 91.9 0.99 3.4E-05 42.4 10.4 89 8-96 109-201 (224)
124 1gnf_A Transcription factor GA 85.1 0.33 1.1E-05 33.8 1.5 38 402-439 3-41 (46)
125 2vut_I AREA, nitrogen regulato 81.4 0.57 1.9E-05 32.2 1.4 35 404-438 2-37 (43)
126 3dfx_A Trans-acting T-cell-spe 78.8 0.54 1.8E-05 35.1 0.7 38 401-438 5-43 (63)
127 4gat_A Nitrogen regulatory pro 77.3 0.94 3.2E-05 34.1 1.6 37 402-438 8-45 (66)
128 2q12_A DIP13 alpha, DCC-intera 76.1 52 0.0018 30.9 14.5 57 38-94 121-182 (265)
129 3qr0_A Phospholipase C-beta (P 72.3 8.9 0.0003 42.8 8.6 38 280-317 103-145 (816)
130 2zkm_X 1-phosphatidylinositol- 72.2 5.5 0.00019 44.4 6.9 38 280-317 96-138 (799)
131 3caz_A BAR protein; thermo-aci 69.4 29 0.00098 31.3 9.5 94 8-101 122-216 (294)
132 3ohm_B 1-phosphatidylinositol- 67.8 4.8 0.00016 45.3 5.2 38 280-317 100-142 (885)
133 4hc9_A Trans-acting T-cell-spe 67.7 1.7 5.9E-05 36.4 1.2 37 403-439 5-42 (115)
134 2kae_A GATA-type transcription 66.5 1.1 3.9E-05 34.2 -0.1 35 403-438 8-45 (71)
135 1u5k_A Hypothetical protein; O 65.1 3 0.0001 39.3 2.5 32 401-432 148-179 (244)
136 3dyt_A Sorting nexin-9; 3-heli 60.8 21 0.00073 35.6 8.1 58 41-98 303-360 (366)
137 3swy_A Cyclic nucleotide-gated 57.5 41 0.0014 23.2 6.5 39 92-130 5-43 (46)
138 4akv_A Sorting nexin-33; trans 57.0 45 0.0015 33.6 9.7 59 41-99 323-381 (386)
139 2ykt_A Brain-specific angiogen 56.5 99 0.0034 29.2 11.5 35 62-96 189-224 (253)
140 2q13_A DCC-interacting protein 55.2 1.7E+02 0.0057 29.0 14.3 27 38-64 121-147 (385)
141 3swf_A CGMP-gated cation chann 47.5 68 0.0023 24.4 6.9 43 92-134 7-49 (74)
142 4hc9_A Trans-acting T-cell-spe 47.0 7.5 0.00026 32.4 1.6 39 401-439 57-96 (115)
143 1d4u_A Nucleotide excision rep 46.7 4.7 0.00016 33.4 0.4 31 402-432 4-35 (111)
144 3g9m_A Glucocorticoid receptor 42.6 8.1 0.00028 30.7 1.1 30 402-434 1-30 (90)
145 2efk_A CDC42-interacting prote 40.9 2.3E+02 0.0079 26.5 14.9 62 8-69 137-200 (301)
146 2efl_A Formin-binding protein 40.3 2.3E+02 0.008 26.4 13.7 61 7-67 143-205 (305)
147 3a98_B Engulfment and cell mot 38.9 2.2E+02 0.0074 25.8 10.4 32 280-311 115-147 (203)
148 3mq9_A Bone marrow stromal ant 37.6 2.6E+02 0.009 28.2 12.2 31 13-44 353-383 (471)
149 1r4i_A Androgen receptor; AR, 37.4 10 0.00035 31.1 1.0 32 401-435 5-36 (105)
150 1dl6_A Transcription factor II 35.9 18 0.00062 26.1 2.1 29 404-433 12-40 (58)
151 1tjl_A DNAK suppressor protein 35.5 7 0.00024 34.3 -0.3 33 401-433 109-142 (151)
152 2ebl_A COUP transcription fact 35.4 10 0.00035 30.1 0.7 31 402-435 6-36 (89)
153 1hcq_A Protein (estrogen recep 34.6 13 0.00045 29.1 1.2 31 402-435 3-33 (84)
154 4glq_A Methyl-accepting chemot 34.2 31 0.0011 30.1 3.8 42 421-480 119-160 (171)
155 2v0o_A FCHO2, FCH domain only 34.2 2.8E+02 0.0095 25.5 11.9 25 41-65 163-187 (276)
156 2uzg_A Ubiquitin carboxyl-term 33.9 25 0.00085 28.2 2.8 28 401-428 23-53 (97)
157 2han_B Ecdysone receptor; tran 33.6 13 0.00046 31.0 1.2 31 402-435 7-37 (119)
158 2a66_A Orphan nuclear receptor 32.9 9.6 0.00033 31.7 0.1 32 401-435 7-38 (113)
159 2nll_B Protein (thyroid hormon 32.3 11 0.00037 30.8 0.3 29 404-435 2-30 (103)
160 2han_A Protein ultraspiracle; 32.1 15 0.00051 29.3 1.1 31 402-435 9-39 (93)
161 4ioe_A Secreted protein ESXB; 30.8 1.7E+02 0.0059 22.0 10.6 33 32-64 10-42 (93)
162 1naf_A ADP-ribosylation factor 30.2 2.7E+02 0.0094 24.2 11.9 90 23-113 21-112 (158)
163 3haj_A Human pacsin2 F-BAR; pa 30.0 4.6E+02 0.016 26.7 13.1 32 36-67 187-218 (486)
164 2xi5_A RNA polymerase L, L-pro 29.5 41 0.0014 29.9 3.5 63 14-82 4-66 (184)
165 1a6y_A Orphan nuclear receptor 28.2 17 0.00057 29.1 0.8 30 403-435 7-36 (94)
166 1cit_A NGFI-B, protein (orphan 28.2 21 0.00072 28.2 1.4 28 405-435 2-29 (89)
167 3hie_A Protein PSL1, exocyst c 28.2 83 0.0028 27.9 5.4 42 280-322 115-156 (171)
168 1deq_A Fibrinogen (alpha chain 27.6 3.1E+02 0.011 27.4 9.9 9 56-64 64-72 (390)
169 1ynw_B Retinoic acid receptor 26.6 15 0.0005 29.8 0.2 30 403-435 3-32 (99)
170 1oxz_A ADP-ribosylation factor 26.5 3.5E+02 0.012 24.2 9.6 89 23-113 37-128 (186)
171 3ulb_A Target of rapamycin com 25.9 1.4E+02 0.0048 24.9 6.0 36 280-315 74-115 (121)
172 1dsz_A RAR-alpha, retinoic aci 25.5 19 0.00063 28.3 0.6 29 404-435 5-33 (86)
173 1lo1_A Steroid hormone recepto 25.1 14 0.00047 29.9 -0.3 30 403-435 4-33 (98)
174 3j21_d 50S ribosomal protein L 25.0 20 0.00068 28.4 0.7 31 399-430 29-76 (89)
175 4fye_A SIDF, inhibitor of grow 24.7 5.1E+02 0.018 25.5 12.6 92 35-133 487-579 (761)
176 1kb2_A Vitamin D3 receptor; VD 24.4 17 0.00058 30.0 0.2 30 403-435 6-35 (110)
177 4dyl_A Tyrosine-protein kinase 24.4 4.7E+02 0.016 26.0 11.1 71 8-81 141-214 (406)
178 3k1f_M Transcription initiatio 24.2 48 0.0016 29.7 3.0 28 405-432 23-51 (197)
179 2g45_A Ubiquitin carboxyl-term 24.2 36 0.0012 28.8 2.2 29 401-429 32-60 (129)
180 2kgo_A Uncharacterized protein 23.9 9.2 0.00032 31.5 -1.5 33 402-434 55-88 (108)
181 1dsz_B RXR-alpha, retinoic aci 23.5 13 0.00044 29.2 -0.7 31 402-435 4-34 (85)
182 3a58_A Exocyst complex compone 23.1 1.2E+02 0.0042 29.3 5.9 42 281-323 186-227 (320)
183 3dzy_D Peroxisome proliferator 23.0 23 0.00078 36.1 0.9 31 401-434 48-78 (419)
184 4h8s_A DCC-interacting protein 22.1 5.7E+02 0.02 25.1 15.7 29 37-65 143-171 (407)
185 3c5k_A HD6, histone deacetylas 21.4 49 0.0017 27.1 2.4 27 401-427 22-48 (109)
186 3cbb_A HNF-4-alpha, hepatocyte 20.4 22 0.00075 27.4 0.1 28 405-435 2-29 (78)
187 4hn5_A Glucocorticoid receptor 20.2 32 0.0011 28.7 1.0 30 402-434 28-57 (117)
No 1
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=100.00 E-value=1.5e-40 Score=345.41 Aligned_cols=248 Identities=27% Similarity=0.384 Sum_probs=194.9
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVA-VVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l-~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
+++||+++.+||++++||++++|+|+++.+ .|++++|+++|+.|++++||||.+|+.++.++++++|+.|+.||+++.+
T Consensus 130 kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ 209 (385)
T 2q13_A 130 KEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQIS 209 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999988755 5777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchHHH
Q 011187 86 FFKQGYELL-HQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKLI 164 (491)
Q Consensus 86 ~f~~g~e~~-~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~ 164 (491)
||++|++++ ++++||+++|...++++|.+++.+++.+.+.++.++.. ...+ +.|+.+...
T Consensus 210 ff~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~----~~~~-----~~~~~~~~~---------- 270 (385)
T 2q13_A 210 FFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVA----SDPL-----YVPDPDPTK---------- 270 (385)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HGGG-----SSSSCCTTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCC-----CCCCCcccc----------
Confidence 999999998 59999999999999999999999988887776554321 1111 112211000
Q ss_pred HHHHhhhccCCcceeEEEEEeecCCC--cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccc
Q 011187 165 EAAMQSAVKGKVQTIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSR 242 (491)
Q Consensus 165 ~~~~~~~~~~~~~~~keGyL~Krs~~--~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 242 (491)
. ......++|+|||+|+++. .++.|+||||||+ ++.|+||++. +.
T Consensus 271 -----~-~~~~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~-~~~L~y~k~~-~~------------------------- 317 (385)
T 2q13_A 271 -----F-PVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQ-GGNLMSQARG-DV------------------------- 317 (385)
T ss_dssp -----S-CCCCCCSCCEEEEEEC--------CCEEEEEEEE-TTEEEEECSS-CS-------------------------
T ss_pred -----c-ccCCCCccEEEEEEEecCCCCCcCCceeEEEEEE-CCEEEEecCC-Cc-------------------------
Confidence 0 0011357899999999765 3457999999998 4568888873 21
Q ss_pred ccccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 011187 243 WLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASLLSFQ 320 (491)
Q Consensus 243 ~~~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~ 320 (491)
.+...|++..|+|.+. +..+++|||+|++++ ++|+|||+|++|+++||.||+.+|..++...
T Consensus 318 ---------------~~~~~i~l~~~~v~~~-~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~~~~ 381 (385)
T 2q13_A 318 ---------------AGGLAMDIDNCSVMAV-DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSE 381 (385)
T ss_dssp ---------------SCEEEEECTTCEEEEE-CCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTTCC---
T ss_pred ---------------CCCceEEccceEEEec-cccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhcccc
Confidence 1234577888888765 346889999999999 9999999999999999999999987666544
Q ss_pred Cc
Q 011187 321 TP 322 (491)
Q Consensus 321 ~~ 322 (491)
.|
T Consensus 382 ~~ 383 (385)
T 2q13_A 382 NP 383 (385)
T ss_dssp --
T ss_pred CC
Confidence 33
No 2
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=347.74 Aligned_cols=248 Identities=22% Similarity=0.346 Sum_probs=195.6
Q ss_pred cchhhhhhhHHHHHHHHHHhccCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 011187 6 FTVAFNGDGNFVLQAREKFLSLRKSTRMDVAV-VIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHL 84 (491)
Q Consensus 6 ~~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~-E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~ 84 (491)
.+++||+++++||++++||++++|+|+++.++ |++++|+++|+.|++++||||.+|+.|+.++++++++.+++|++++.
T Consensus 152 ~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~~~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~ 231 (407)
T 4h8s_A 152 LKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQI 231 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999988775 77899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCCCCCchHH
Q 011187 85 RFFKQGYELL-HQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQIDRESRQCLNGSLGSPSGDNVKPFPRNSNKL 163 (491)
Q Consensus 85 ~~f~~g~e~~-~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~ 163 (491)
+||++|++++ .++++|+..+...+++++.+++.+++++...++.+. ........|+.+...+
T Consensus 232 ~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-------- 294 (407)
T 4h8s_A 232 NFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELL---------SVDESVYTPDSDVAAP-------- 294 (407)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CSCTTTTCTTSCSSSC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------cccccccCCCCCcccc--------
Confidence 9999999998 679999999999999999998888766555443221 1111112222211110
Q ss_pred HHHHHhhhccCCcceeEEEEEeecCC--CcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccc
Q 011187 164 IEAAMQSAVKGKVQTIKQGYLSKRSS--NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLS 241 (491)
Q Consensus 164 ~~~~~~~~~~~~~~~~keGyL~Krs~--~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 241 (491)
......+.|+|||+|+++ ..+++|+||||||+ +|.|+||+.....
T Consensus 295 --------~~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~-~~~l~y~~~~~~~------------------------ 341 (407)
T 4h8s_A 295 --------QINRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQ-GGNLMCQPRGAVA------------------------ 341 (407)
T ss_dssp --------CCCCSCSCCEEEEEEEEECSSSCEEEEEEEEEEC-SSCEECCCTTCSS------------------------
T ss_pred --------cccCCcceeeceeeeeccCCCCCCCceEEEEEEE-CCEEEEEeCCCCC------------------------
Confidence 112345789999999853 24578999999996 5668888765432
Q ss_pred cccccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 242 RWLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 242 ~~~~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
+...++|..|+|++. +..+|+|||+|++++ ++|+|||+|++|+++||.||+++|..++..
T Consensus 342 -----------------~~~~~~l~~~~v~~~-~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~~~ 403 (407)
T 4h8s_A 342 -----------------GGLIQDLDNCSVMAV-DCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIYLT 403 (407)
T ss_dssp -----------------CCCCBCSSCCEEEEE-CCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC---
T ss_pred -----------------CCeEEECCceEEEEC-CCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHhhcc
Confidence 112345778888875 456899999999986 689999999999999999999999877654
Q ss_pred CC
Q 011187 320 QT 321 (491)
Q Consensus 320 ~~ 321 (491)
..
T Consensus 404 ~n 405 (407)
T 4h8s_A 404 DN 405 (407)
T ss_dssp --
T ss_pred cC
Confidence 33
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=252.73 Aligned_cols=95 Identities=42% Similarity=0.760 Sum_probs=90.2
Q ss_pred hhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHh
Q 011187 385 EYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSL 464 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~ 464 (491)
+..+++++.++.|+..|+|+.|||||+++|+|||+|||||||++||||||.||+|||+||||+|| .|++++|++|+.+
T Consensus 11 ~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld--~w~~~~l~~m~~~ 88 (141)
T 2crr_A 11 KLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSS--CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCC--CCCHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred chHHHHHHHhcccCCCC
Q 011187 465 GNIYANSVWEELLRIGN 481 (491)
Q Consensus 465 GN~~~n~~~e~~~~~~~ 481 (491)
||..+|++||+++|+..
T Consensus 89 GN~~an~~~e~~lp~~~ 105 (141)
T 2crr_A 89 GNTKARLLYEANLPENF 105 (141)
T ss_dssp HHHHHHHHGGGSCCTTC
T ss_pred ccHHHHHHHHhcCCccc
Confidence 99999999999999875
No 4
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=250.70 Aligned_cols=94 Identities=41% Similarity=0.743 Sum_probs=88.5
Q ss_pred hhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhc
Q 011187 386 YIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLG 465 (491)
Q Consensus 386 ~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~G 465 (491)
..+++++.++.|++.|+|+.|||||+++|+|||+|+|||||++||||||+||+|||+||||+|| .|++++|++|+.+|
T Consensus 10 ~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld--~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 10 DVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMG 87 (134)
T ss_dssp ---CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeecccc--CCCHHHHHHHHHHc
Confidence 3456788999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred hHHHHHHHhcccCCCC
Q 011187 466 NIYANSVWEELLRIGN 481 (491)
Q Consensus 466 N~~~n~~~e~~~~~~~ 481 (491)
|..+|++||+++|+..
T Consensus 88 N~~an~~~e~~lp~~~ 103 (134)
T 2iqj_A 88 NGKANRLYEAYLPETF 103 (134)
T ss_dssp HHHHHHHHTTTCCSSC
T ss_pred hHHHHHHHHhcCCccC
Confidence 9999999999999875
No 5
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.97 E-value=3.8e-33 Score=246.58 Aligned_cols=100 Identities=23% Similarity=0.492 Sum_probs=92.8
Q ss_pred hhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHh
Q 011187 385 EYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSL 464 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~ 464 (491)
++.+++++.|+.|+..|+|+.|||||+++|+|+|+|||||||++||||||+||+| |+||||+|| .|++++|++|+.+
T Consensus 7 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld--~w~~~~l~~m~~~ 83 (140)
T 2olm_A 7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMT--TFTQQEIEFLQKH 83 (140)
T ss_dssp HHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTC--CCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCC--CCCHHHHHHHHHh
Confidence 3455788899999999999999999999999999999999999999999999997 999999999 7999999999999
Q ss_pred chHHHHHHHhcccCCCCCCCCcc
Q 011187 465 GNIYANSVWEELLRIGNNSLTDE 487 (491)
Q Consensus 465 GN~~~n~~~e~~~~~~~~~~~~~ 487 (491)
||..+|++||+++++...+.|+.
T Consensus 84 GN~~an~~~e~~~~~~~~~~P~~ 106 (140)
T 2olm_A 84 GNEVCKQIWLGLFDDRSSAIPDF 106 (140)
T ss_dssp HHHHHHHHHTTTCCTTTSCCCCT
T ss_pred ccHHHHHHHHhhCCcccCCCCCC
Confidence 99999999999999876666653
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.8e-32 Score=239.74 Aligned_cols=87 Identities=37% Similarity=0.670 Sum_probs=82.1
Q ss_pred ccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHH
Q 011187 391 EKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYAN 470 (491)
Q Consensus 391 ~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n 470 (491)
+..++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+|| .|++++|++|+.+||.++|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD--~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTS--CCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcC--cCCHHHHHHHHhhccHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHhcccCC
Q 011187 471 SVWEELLRI 479 (491)
Q Consensus 471 ~~~e~~~~~ 479 (491)
++||++.+.
T Consensus 102 ~~~e~~~~~ 110 (138)
T 2owa_A 102 NYFKQVLGV 110 (138)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHcCC
Confidence 999986543
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.5e-32 Score=239.09 Aligned_cols=87 Identities=39% Similarity=0.717 Sum_probs=82.1
Q ss_pred cCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHH
Q 011187 389 KNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIY 468 (491)
Q Consensus 389 ~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~ 468 (491)
++++.++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+|| .|++++|+.|+.+||.+
T Consensus 24 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD--~W~~~el~~m~~~GN~~ 101 (147)
T 3dwd_A 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAK 101 (147)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC----CCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCcccccccc--CCCHHHHHHHHHHhhHH
Confidence 4667899999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhccc
Q 011187 469 ANSVWEELL 477 (491)
Q Consensus 469 ~n~~~e~~~ 477 (491)
+|++||++.
T Consensus 102 an~~~ea~~ 110 (147)
T 3dwd_A 102 FREFLESQE 110 (147)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHhCC
Confidence 999999974
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=9.1e-32 Score=238.89 Aligned_cols=90 Identities=42% Similarity=0.666 Sum_probs=85.4
Q ss_pred CccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHH
Q 011187 390 NEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYA 469 (491)
Q Consensus 390 ~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~ 469 (491)
.++.++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||+ .|++++|+.|+.+||.++
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~-~W~~~~l~~m~~~GN~~a 94 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS-NWSWFQLRCMQVGGNASA 94 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCC-CCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCC-CCCHHHHHHHHHHhhHHH
Confidence 4678889999999999999999999999999999999999999999999999999999993 299999999999999999
Q ss_pred HHHHhcccCCC
Q 011187 470 NSVWEELLRIG 480 (491)
Q Consensus 470 n~~~e~~~~~~ 480 (491)
|++||++.++.
T Consensus 95 n~~~e~~~~~~ 105 (149)
T 2crw_A 95 SSFFHQHGCST 105 (149)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHhcCCCC
Confidence 99999999764
No 9
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=5.7e-31 Score=234.50 Aligned_cols=90 Identities=42% Similarity=0.740 Sum_probs=83.6
Q ss_pred CccHHHHHHcc-cCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHH
Q 011187 390 NEKPIDLLRRV-YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIY 468 (491)
Q Consensus 390 ~~~~~~~l~~~-~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~ 468 (491)
.++.++.|++. |+|+.|||||+++|+|||+|+|||||++||||||+||+|||+||||+|| .|++++|++|+.+||.+
T Consensus 8 a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD--~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 8 AVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMD--IFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTC--CCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeecccc--CcCHHHHHHHHhhCHHH
Confidence 34677778775 8999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhcccCCCC
Q 011187 469 ANSVWEELLRIGN 481 (491)
Q Consensus 469 ~n~~~e~~~~~~~ 481 (491)
+|++||++.+...
T Consensus 86 an~~~e~~g~~~~ 98 (163)
T 3sub_A 86 CQTYLENYGISDF 98 (163)
T ss_dssp HHHHHHHTTCTTS
T ss_pred HHHHHHHcCCccc
Confidence 9999999876654
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-30 Score=229.99 Aligned_cols=89 Identities=43% Similarity=0.718 Sum_probs=83.2
Q ss_pred CccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHH
Q 011187 390 NEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYA 469 (491)
Q Consensus 390 ~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~ 469 (491)
.++.++.|+..|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+||+ .|++++|+.|+.+||.++
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~-~W~~~~l~~m~~~GN~~a 102 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS-NWNWFQLRCMQVGGNANA 102 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCC-CCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCC-CCCHHHHHHHHHhCHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999993 299999999999999999
Q ss_pred HHHHhcccCC
Q 011187 470 NSVWEELLRI 479 (491)
Q Consensus 470 n~~~e~~~~~ 479 (491)
|++||++..+
T Consensus 103 n~~~e~~g~~ 112 (144)
T 2p57_A 103 TAFFRQHGCT 112 (144)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999988544
No 11
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.95 E-value=3.7e-29 Score=258.10 Aligned_cols=95 Identities=46% Similarity=0.861 Sum_probs=87.9
Q ss_pred hhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHh
Q 011187 385 EYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSL 464 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~ 464 (491)
++.+++++.++.|++.|+|+.|||||+++|+|||+|+|||||++||||||+||+|||+||||+|| .|++++|++|+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d--~w~~~~~~~~~~~ 104 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCEL 104 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecc--cccHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred chHHHHHHHhcccCCCC
Q 011187 465 GNIYANSVWEELLRIGN 481 (491)
Q Consensus 465 GN~~~n~~~e~~~~~~~ 481 (491)
||..+|++||+++|+..
T Consensus 105 gn~~~n~~~e~~~~~~~ 121 (368)
T 3jue_A 105 GNVIINQIYEARVEAMA 121 (368)
T ss_dssp CHHHHHHHHTTTTTTTT
T ss_pred ccHHHHHHHHhhccccc
Confidence 99999999999999754
No 12
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.94 E-value=9e-28 Score=248.78 Aligned_cols=93 Identities=41% Similarity=0.734 Sum_probs=89.5
Q ss_pred hhhccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHh
Q 011187 385 EYIVKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSL 464 (491)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~ 464 (491)
++.+++++.+..|...|+|+.|||||+++|+|||+|+|||||++||||||+| +|||+||||+|| .|++++|++|+.+
T Consensus 16 ~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld--~w~~~~~~~~~~~ 92 (386)
T 3lju_X 16 FQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEAQVEFMASH 92 (386)
T ss_dssp HHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTS--CCCHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-Cccceeeeeccc--CCCHHHHHHHHHh
Confidence 4566788999999999999999999999999999999999999999999999 999999999999 7999999999999
Q ss_pred chHHHHHHHhcccCCC
Q 011187 465 GNIYANSVWEELLRIG 480 (491)
Q Consensus 465 GN~~~n~~~e~~~~~~ 480 (491)
||.++|++||+++|+.
T Consensus 93 gN~~~~~~~e~~~~~~ 108 (386)
T 3lju_X 93 GNDAARARFESKVPSF 108 (386)
T ss_dssp SHHHHHHHHTTTCCTT
T ss_pred cchHHHHHHhccCCcc
Confidence 9999999999999986
No 13
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=6.9e-27 Score=237.58 Aligned_cols=91 Identities=37% Similarity=0.676 Sum_probs=85.8
Q ss_pred ccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchH
Q 011187 388 VKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNI 467 (491)
Q Consensus 388 ~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~ 467 (491)
.++++.++.|++.|+|+.|||||+++|+|||+|+|||+|++||||||+||+|||+||||+|| .|++++|+.|+.+||.
T Consensus 22 ~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~--~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 22 PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNA 99 (329)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSC--CCCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeecccc--CCCHHHHHHHHHhCcH
Confidence 34667899999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhcccCCC
Q 011187 468 YANSVWEELLRIG 480 (491)
Q Consensus 468 ~~n~~~e~~~~~~ 480 (491)
++|++||+..+..
T Consensus 100 ~~n~~~e~~~~~~ 112 (329)
T 3o47_A 100 KFREFLESQEDYD 112 (329)
T ss_dssp HHHHHHHTCSSCC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999986554
No 14
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=7.6e-26 Score=226.89 Aligned_cols=95 Identities=46% Similarity=0.745 Sum_probs=88.3
Q ss_pred cCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHH
Q 011187 389 KNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIY 468 (491)
Q Consensus 389 ~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~ 468 (491)
..+..++.|++.|+|+.|+|||+++|+|+|+|+|||+|++||||||.||+|||+|||++|| .|+++++.+|..+||..
T Consensus 28 ~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD--~w~~~~l~~~~~~GN~~ 105 (301)
T 2b0o_E 28 LTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTS 105 (301)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcC--CCCHHHHHHHHHcCCHH
Confidence 3456788899999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhcccCCCCCCCC
Q 011187 469 ANSVWEELLRIGNNSLT 485 (491)
Q Consensus 469 ~n~~~e~~~~~~~~~~~ 485 (491)
+|.+||+.+|+.....|
T Consensus 106 ~n~i~E~~l~~~~~~kP 122 (301)
T 2b0o_E 106 FNEVMEAQLPSHGGPKP 122 (301)
T ss_dssp HHHHHTTTCCSSSCSCC
T ss_pred HHHHHHHhhhhccCCCC
Confidence 99999999998644444
No 15
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=5.5e-26 Score=225.28 Aligned_cols=94 Identities=45% Similarity=0.772 Sum_probs=88.7
Q ss_pred CccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHH
Q 011187 390 NEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYA 469 (491)
Q Consensus 390 ~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~ 469 (491)
.++.++.|++.|+|+.|+|||+++|+|+|+|||+|+|++||||||+||+|||+|||++|| .|+++++.+|..+||..+
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d--~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGHHHHHSCHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecC--CCCHHHHHHHHHcCcHHH
Confidence 457889999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHhcccCCCCCCCC
Q 011187 470 NSVWEELLRIGNNSLT 485 (491)
Q Consensus 470 n~~~e~~~~~~~~~~~ 485 (491)
|.+||+.+|+....+|
T Consensus 82 n~i~e~~l~~~~~~kP 97 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKP 97 (278)
T ss_dssp HHHHTTTCCSSSCCSC
T ss_pred HHHHHhhCChhhcCCC
Confidence 9999999998765444
No 16
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=7.1e-26 Score=242.15 Aligned_cols=97 Identities=45% Similarity=0.722 Sum_probs=91.0
Q ss_pred ccCccHHHHHHcccCCCcccCCCCCCCCceeeccceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchH
Q 011187 388 VKNEKPIDLLRRVYGNNKCADCGASEPDWASLNLGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNI 467 (491)
Q Consensus 388 ~~~~~~~~~l~~~~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~ 467 (491)
+.+++.++.|++.|+|+.|+|||+++|+|+|+|+|||+|++||||||+||+|||+||||+|| .|+++++++|+.+||.
T Consensus 8 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld--~w~~~~~~l~~~~GN~ 85 (497)
T 3lvq_E 8 DLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNT 85 (497)
T ss_dssp CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGTTTTTCCHH
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccC--CCCHHHHHHHHHHhhH
Confidence 34567889999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCc
Q 011187 468 YANSVWEELLRIGNNSLTD 486 (491)
Q Consensus 468 ~~n~~~e~~~~~~~~~~~~ 486 (491)
.+|.+||+.+|+...+.|.
T Consensus 86 ~an~i~E~~lp~~~~~kP~ 104 (497)
T 3lvq_E 86 SFNEVMEAQLPSHGGPKPS 104 (497)
T ss_dssp HHHHHHTTTCCSSSCSCCC
T ss_pred HHHHHHHhhcccccCCCCC
Confidence 9999999999987666654
No 17
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=99.87 E-value=1.5e-21 Score=192.44 Aligned_cols=124 Identities=27% Similarity=0.358 Sum_probs=117.5
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRM-DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLR 85 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~-~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~ 85 (491)
+++||+++.+||++++||++++|+|++ ..++|++++|+++|+.|++++||||.+|+.|+.++++++|+.|+.||++|.+
T Consensus 130 kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ 209 (265)
T 2q12_A 130 KEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQIS 209 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999987 5579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011187 86 FFKQGYELLH-QMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYL 130 (491)
Q Consensus 86 ~f~~g~e~~~-~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~ 130 (491)
||++|++++. +++||+++|..+++++|.+++.+++.+.++++.++
T Consensus 210 ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~ 255 (265)
T 2q12_A 210 FFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLE 255 (265)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999995 99999999999999999999999988888876554
No 18
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=168.72 Aligned_cols=119 Identities=26% Similarity=0.430 Sum_probs=77.2
Q ss_pred ceeEEEEEeecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
.++|+|||+|++++ ..++|++|||||+++++|+||++..+...... . . ...+....
T Consensus 3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~--~-------~--~i~l~~~~------------ 59 (128)
T 2rlo_A 3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTH--G-------K--EMDLLRTT------------ 59 (128)
T ss_dssp CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCS--C-------E--EEESSSCE------------
T ss_pred cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccC--C-------C--eeeeeeeE------------
Confidence 47899999999653 67899999999998899999976322100000 0 0 00000000
Q ss_pred cccceeEeecCcceeecC-----CCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 256 KSVARHTVNLLTSTIKPD-----ADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~-----~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
...+...+.+..+.+.+. +...+++|||.|++++ ++|+|+|+|++|+++||.||+.+|..+|+
T Consensus 60 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l~ 128 (128)
T 2rlo_A 60 VKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ 128 (128)
T ss_dssp EECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred EecCCCccccccccccccccccccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence 001111222333333211 1112578999999998 99999999999999999999999998774
No 19
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.83 E-value=1.9e-20 Score=162.18 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=78.5
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEe----cCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYR----KPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk----~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
...++|||+|+++...|.|+||||||.++ .||||+ ++.+.
T Consensus 7 n~~~~G~L~KqG~~~~K~WKrRwFVL~~~-~LyYfk~~~~~~~~~----------------------------------- 50 (126)
T 1wi1_A 7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQV-SQYTFAMCSYREKKA----------------------------------- 50 (126)
T ss_dssp CEEEEEEEEEECSSSCCSCEEEEEEEEEE-ETTEEEEEECCSSSS-----------------------------------
T ss_pred CCceeEEEEEeCCCcccccceEEEEEeCC-EEEEEEcccccccCC-----------------------------------
Confidence 36899999999887679999999999865 588887 55442
Q ss_pred ccccccceeEeecCcceeec---CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKP---DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~---~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.+.|.|..++|.. .++...++|+|+|++++++|+|+|+|++||.+||.||..|+-
T Consensus 51 -----~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 51 -----EPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp -----CCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred -----CCceEEECCCcEEEEecCCcccccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence 233556677788763 333456899999999999999999999999999999998874
No 20
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=157.71 Aligned_cols=101 Identities=29% Similarity=0.503 Sum_probs=82.3
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...++++|||+|++...++.|+||||||+ ++.|+||+++.+.+
T Consensus 7 ~~~~~~~G~L~K~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~~~------------------------------------ 49 (114)
T 2da0_A 7 GYGSEKKGYLLKKSDGIRKVWQRRKCSVK-NGILTISHATSNRQ------------------------------------ 49 (114)
T ss_dssp CCCSCEEEEEEEECSSSCCCEEEEEEEEE-TTEEEECCSSCCSC------------------------------------
T ss_pred CCCccEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEEcCCCCCC------------------------------------
Confidence 34578999999998766689999999996 56799998865421
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQ 320 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~ 320 (491)
...+.+..+.|.+. .+++|||+|+++.++|+|+|+|++|+++||.+|+.+|..+++..
T Consensus 50 -----~~~i~l~~~~v~~~---~~~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~~ 107 (114)
T 2da0_A 50 -----PAKLNLLTCQVKPN---AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMA 107 (114)
T ss_dssp -----CEEEETTTSEEEEC---SSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -----CCEEEeeeeEEEEC---CCCCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 23345666777653 24689999999999999999999999999999999999998764
No 21
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=148.11 Aligned_cols=93 Identities=25% Similarity=0.369 Sum_probs=73.0
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
+.|+|||+|++. ..++|++|||||+ ++.|+||+++.+.. .
T Consensus 1 V~k~G~L~K~g~-~~k~WkkR~FvL~-~~~L~Yy~~~~~~~--------------------------------------~ 40 (94)
T 2rsg_A 1 VERCGVLSKWTN-YIHGWQDRWVVLK-NNALSYYKSEDETE--------------------------------------Y 40 (94)
T ss_dssp CCEEEEEEEESS-STTCEEEEEEEEE-TTEEEEESSTTGGG--------------------------------------T
T ss_pred CCEEEEEEEeCC-CCCCceEEEEEEE-CCEEEEEEeccccc--------------------------------------c
Confidence 468999999975 4589999999997 45688888765521 1
Q ss_pred cceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...+++..+.+.+. ...+++|.|.+++++|+|+|+|++|+++||.||++|.
T Consensus 41 ~~~~~i~l~~~~~~~~---~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 41 GCRGSICLSKAVITPH---DFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp CCSEEEETTTCEEEEC---SSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred cceeeEecceeeeecC---cccceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhhc
Confidence 2234566766766654 2457999999999999999999999999999999863
No 22
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.79 E-value=6.2e-19 Score=155.16 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=75.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++ ..+.|+||||||+ ++.|+||+++.+.
T Consensus 6 ~~v~k~GwL~K~g--~~k~WkrRWfVLk-~~~L~yyk~~~~~-------------------------------------- 44 (130)
T 1v88_A 6 SGIVMADWLKIRG--TLKSWTKLWCVLK-PGVLLIYKTQKNG-------------------------------------- 44 (130)
T ss_dssp SSCCEEEEEEECC--SSSSCEEEEEEEE-TTEEEEESCSSSC--------------------------------------
T ss_pred CceEEEeEEEEeC--CCCCceEEEEEEE-CCEEEEECCCCCC--------------------------------------
Confidence 3578999999987 4589999999997 5679999987652
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeCC------------------------eEEEEEeCCHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT------------------------KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~------------------------rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
.+.+.|.|..|.|...+ ...++|||+|.++. ++|+|+|+|++|+++||.||+.
T Consensus 45 --~p~G~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~ 121 (130)
T 1v88_A 45 --QWVGTVLLNACEIIERP-SKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121 (130)
T ss_dssp --CCCEEEECSSCEECCCC-TTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHH
T ss_pred --CceEEEEcCCCEEEECC-CCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHH
Confidence 23456677777775432 33456999999864 3499999999999999999999
Q ss_pred HHH
Q 011187 312 VIA 314 (491)
Q Consensus 312 ai~ 314 (491)
||.
T Consensus 122 a~~ 124 (130)
T 1v88_A 122 ALK 124 (130)
T ss_dssp HHT
T ss_pred HHh
Confidence 884
No 23
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.79 E-value=7.4e-19 Score=158.16 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=73.0
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++|+|||+|+++.. +.|+||||||+++ .|+||+++.+..+
T Consensus 17 pv~keG~L~Kkg~~~-k~WkrRWFvLk~~-~L~Yyk~~~d~~~------------------------------------- 57 (149)
T 1x1f_A 17 PLYFEGFLLIKRSGY-REYEHYWTELRGT-TLFFYTDKKSIIY------------------------------------- 57 (149)
T ss_dssp CEEEEEEEEEECTTC-CSCEEEEEEEETT-EEEEESCSSCSSC-------------------------------------
T ss_pred CccEEEEEEEeCCCC-CCceeEEEEEcCC-EEEEEeCCCcccc-------------------------------------
Confidence 489999999998665 8999999999876 5888998766321
Q ss_pred ccceeEeecCcceeec-CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKP-DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~-~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.|+|..+++.. ......+++||+|++++++|+|+|+|++|+++||.||+.++.
T Consensus 58 ---~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 58 ---VDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp ---SEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---CcEEECCCceEEeeccCCCCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 1233444433321 111223579999999999999999999999999999998765
No 24
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.78 E-value=2.2e-18 Score=147.00 Aligned_cols=99 Identities=25% Similarity=0.376 Sum_probs=77.3
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++++|||+|++.. .+.|++|||||.++ .|+||+++.+.
T Consensus 4 ~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~-~L~yy~~~~~~--------------------------------------- 42 (113)
T 1pls_A 4 KRIREGYLVKKGSV-FNTWKPMWVVLLED-GIEFYKKKSDN--------------------------------------- 42 (113)
T ss_dssp CCSEEEEEEEESSS-SSCCEEEEEEEETT-EEEEESSTTCS---------------------------------------
T ss_pred CCcEEEEEEEeCCC-CCCceEEEEEEECC-EEEEEeCCCCC---------------------------------------
Confidence 46799999999764 47899999999865 58899887542
Q ss_pred ccceeEeecCcceeec-CCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 257 SVARHTVNLLTSTIKP-DADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~-~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
.+...|+|..+.+.. ..+...++|||+|++++ ++|+|+|+|++|+++||.+|+.+|....
T Consensus 43 -~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 43 -SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp -SCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred -CcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence 223445565555532 23445678999999987 9999999999999999999999997654
No 25
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.78 E-value=1.6e-18 Score=152.24 Aligned_cols=110 Identities=23% Similarity=0.371 Sum_probs=79.5
Q ss_pred ceeEEEEEeec-----CCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 177 QTIKQGYLSKR-----SSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 177 ~~~keGyL~Kr-----s~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
.++|+|||.|+ ++..+++|++|||||.++ .|+||+++.....+..
T Consensus 11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~-~L~yykd~~~~~~~~~----------------------------- 60 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGN-SLVFYREPPPTAPSSG----------------------------- 60 (129)
T ss_dssp SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESS-EEEEESCC-------------------------------------
T ss_pred ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCC-EEEEEcCccccccccc-----------------------------
Confidence 57899999985 323458999999999855 4888888754211000
Q ss_pred cccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.......+...|+|..|.+....+...++|||+|.+++ ++|+|||+|++||++||.+|+.+|..+
T Consensus 61 ~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 61 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp ------CCSEEEECTTCEEEECTTSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCccEEEeCCcEEEECCCCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 00011234567788888887655556788999999986 789999999999999999999999764
No 26
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=149.64 Aligned_cols=102 Identities=24% Similarity=0.351 Sum_probs=80.1
Q ss_pred cceeEEEEEeecCCC-cccCceEEEEEEecCc-eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 176 VQTIKQGYLSKRSSN-LRADWKRRFFVLDSRG-LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 176 ~~~~keGyL~Krs~~-~~k~WkrRwFvL~~~g-~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
..++++|||.|++.+ ..+.|++|||||++++ .|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~------------------------------------ 49 (119)
T 2dhk_A 6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDA------------------------------------ 49 (119)
T ss_dssp SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCC------------------------------------
T ss_pred CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCc------------------------------------
Confidence 346789999999863 5689999999998764 79999987662
Q ss_pred cccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+...|+|..+.+... ...++++|.|++++|+|+|+|+|++|+++||.+|+.++....+.
T Consensus 50 ----~~~g~I~L~~~~~~~~--~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 50 ----NPLDSIDLSSAVFDCK--ADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp ----SCSEEEEGGGCEEEEC--TTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----ccccEEECCCCEEEec--CCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1234455665555432 23458999999999999999999999999999999999776544
No 27
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=151.97 Aligned_cols=102 Identities=26% Similarity=0.477 Sum_probs=80.7
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEec-CceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~-~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
..++++|||+|++. ..+.|++|||||++ ++.|+||+++.+..
T Consensus 6 ~~~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~------------------------------------ 48 (120)
T 2d9x_A 6 SGENVYGYLMKYTN-LVTGWQYRFFVLNNEAGLLEYFVNEQSRN------------------------------------ 48 (120)
T ss_dssp SCCCCEEEEEEEEE-TTTEEEEEEEEECTTTCEEEEESSGGGSS------------------------------------
T ss_pred CCCcEEEEEEecCC-CCCCceEEEEEEECCCCEEEEEecCcccC------------------------------------
Confidence 45679999999975 44889999999986 68999999875420
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
..+...|+|..+.|.+. ..++++|+|++++ ++|+|+|+|++|+++||.+|+.+|......
T Consensus 49 --~~~~g~I~L~~~~v~~~---~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 49 --QKPRGTLQLAGAVISPS---DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp --SCCSEEEECTTCCEECC---SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccceEEcceEEEEec---CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence 02334566777777653 2457999999997 999999999999999999999999766543
No 28
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.3e-18 Score=151.31 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=72.8
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...++++|||+|++.. .+.|+||||||..++.|+||+++.+..+. |. +.-
T Consensus 5 ~~~v~~~G~L~K~g~~-~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~-----------------g~------------i~l 54 (130)
T 2d9v_A 5 SSGLVRGGWLWRQSSI-LRRWKRNWFALWLDGTLGYYHDETAQDEE-----------------DR------------VVI 54 (130)
T ss_dssp CCCEEEEEEEEEECSS-SCCEEEEEEEEETTTEEEEESSSSTTSEE-----------------EE------------EEC
T ss_pred CCceeEEEEEEeecCc-cCCceeeEEEEccCCEEEEEeCCCCCCcC-----------------ce------------Eec
Confidence 3468899999999764 48999999999657889999987653110 00 000
Q ss_pred ccccceeEeecC-cc-eeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLL-TS-TIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 255 ~~~~~~~~i~l~-~~-~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
......+.+. .| .+.+ ++...++|||+|++++ |+|+|+|+|++|+++||.||+.++.
T Consensus 55 --~~~~~~i~~~~~~~~v~~-~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 55 --HFNVRDIKVGQECQDVQP-PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp --TTTEEEEEEGGGCSSCCC-CSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred --ccceeEEeccccccccCC-CCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 0000001110 01 1222 2344678999999965 9999999999999999999998874
No 29
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.78 E-value=2.1e-18 Score=146.22 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=75.0
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++++|||+|++.. .+.|+||||||+ ++.|+||+++.+.
T Consensus 7 ~~~~~G~L~K~~~~-~~~Wk~RwfvL~-~~~L~yyk~~~~~--------------------------------------- 45 (109)
T 1wgq_A 7 GSTMSGYLYRSKGS-KKPWKHLWFVIK-NKVLYTYAASEDV--------------------------------------- 45 (109)
T ss_dssp SCSCEEEEEEESST-TSCCEEEEEEEE-TTEEEEESCTTCS---------------------------------------
T ss_pred CCeEEEEEEeCCCC-CCCceeEEEEEe-CCEEEEECCCCcC---------------------------------------
Confidence 46789999999654 489999999998 5679999987653
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|+|..+.+....+...++|||+|++++ ++|+|+|+|++|+++||.+|+.++
T Consensus 46 -~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 46 -AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp -SCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 12345666666665544444567999999886 789999999999999999999876
No 30
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=146.41 Aligned_cols=101 Identities=23% Similarity=0.429 Sum_probs=78.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++.. .+.|++|||||.+ +.|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~~~~-~~~Wk~R~fvL~~-~~L~yy~~~~~~-------------------------------------- 45 (115)
T 2dn6_A 6 SGVLKQGYMMKKGHR-RKNWTERWFVLKP-NIISYYVSEDLK-------------------------------------- 45 (115)
T ss_dssp CSCSEEEEEEEECTT-SSCEEEEEEEECS-SCEEEESSTTCS--------------------------------------
T ss_pred CCceEEEEEEecCCC-CCCcEEeEEEEEC-CEEEEeCCCCCc--------------------------------------
Confidence 357899999999764 4889999999975 558899876552
Q ss_pred cccceeEeecCc-ceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 256 KSVARHTVNLLT-STIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 256 ~~~~~~~i~l~~-~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.+...|+|.. +.|...++...+++||.|.+++++|+|+|+|++|+++||.+|+.+|...-.
T Consensus 46 --~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~ 107 (115)
T 2dn6_A 46 --DKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKL 107 (115)
T ss_dssp --SEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 1233444543 345443344567899999999999999999999999999999999976543
No 31
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.77 E-value=1.5e-18 Score=148.71 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=76.0
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecC--ceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSR--GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~--g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
.++.|||+|+++ .+.|+||||||.++ .+||||+++.+.
T Consensus 8 ~~~~G~L~k~~~--~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~-------------------------------------- 47 (112)
T 2coc_A 8 SLLCGPLRLSES--GETWSEVWAAIPMSDPQVLHLQGGSQDG-------------------------------------- 47 (112)
T ss_dssp SSSEEEEEEESS--SSCEEEEEEECCTTCTTCEEEECCTTCS--------------------------------------
T ss_pred ceEEEEEEecCC--CCCceEEEEEEECCCccEEEEECCCCcc--------------------------------------
Confidence 456799999754 58899999999865 489999988763
Q ss_pred cccceeEeecCcceeec--CCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKP--DADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~--~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|.|..|+|.. ..+..+++|||+|+++.++|+|+|+|++++++||.+|+.|+
T Consensus 48 --~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 48 --RLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp --SSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CcceEEEcCCCEEEecCcccccCCCCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 233456777888874 22345679999999999999999999999999999999875
No 32
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.77 E-value=1.2e-18 Score=152.61 Aligned_cols=101 Identities=27% Similarity=0.476 Sum_probs=72.8
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEec--CceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDS--RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~--~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++|||.|+++...+.|+||||||+. +.+||||+++.+...+
T Consensus 15 ~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~----------------------------------- 59 (126)
T 1v5p_A 15 NRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVG----------------------------------- 59 (126)
T ss_dssp CCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTT-----------------------------------
T ss_pred CceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCC-----------------------------------
Confidence 357999999985556899999999983 5578898885431100
Q ss_pred cccceeEeecCc-ceeecCC--CCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLT-STIKPDA--DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 256 ~~~~~~~i~l~~-~~v~~~~--~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..+.+.|+|.. +.|.... ...+++|||.|.++.|+|+|+|+|++|+++||.||+.++.
T Consensus 60 -~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 60 -AGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp -CCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred -ceeeEEEECCCccEEecCCcccCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 12223444443 3443321 2335689999999999999999999999999999997753
No 33
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.77 E-value=1.7e-18 Score=148.29 Aligned_cols=96 Identities=23% Similarity=0.409 Sum_probs=71.2
Q ss_pred EEEEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 180 KQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 180 keGyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
|+|||.|+++. ..+.|++|||||.+ +.||||+++.+..
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~-~~L~~yk~~~~~~-------------------------------------- 42 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSN-GILYQYPDRTDVI-------------------------------------- 42 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEET-TEEEEESSSSCCS--------------------------------------
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEEC-CEEEEECCCCCCC--------------------------------------
Confidence 79999977443 56899999999975 5699999876531
Q ss_pred ccceeEeecCcceee--cCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIK--PDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~--~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
+...|+|..+.+. ...+...++|||+|.++ .++|+|||+|++||++||.+|+.+|...
T Consensus 43 --p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 43 --PLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp --CSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred --ccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 1233445433222 22345678999999976 5799999999999999999999888643
No 34
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.77 E-value=1.5e-18 Score=150.63 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=79.0
Q ss_pred cceeEEEEEeecCCC-------cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccccc
Q 011187 176 VQTIKQGYLSKRSSN-------LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHY 248 (491)
Q Consensus 176 ~~~~keGyL~Krs~~-------~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~ 248 (491)
..+.++|||.|++.. ..+.|++|||||++ +.|+||+++.+...+
T Consensus 6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~-~~L~yyk~~~~~~~~---------------------------- 56 (123)
T 1wjm_A 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRR-GSLGFYKDAKAASAG---------------------------- 56 (123)
T ss_dssp CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEET-TEEEEESSHHHHTTT----------------------------
T ss_pred CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEEC-CEEEEEEcccccccC----------------------------
Confidence 456899999988542 25899999999975 458999887552100
Q ss_pred CCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 249 HGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 249 ~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
....+...|++..+.+.+..+...++|||+|++++ ++|+|+|+|++||++||.+|+.+|..
T Consensus 57 ------~~~~~~~~i~l~~~~~~~~~~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 57 ------VPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp ------CBSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ------cccCCCceEEccCcEEeecccccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 00012334667667776655556789999999987 89999999999999999999999874
No 35
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.76 E-value=2.9e-18 Score=145.95 Aligned_cols=104 Identities=24% Similarity=0.350 Sum_probs=72.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++.. .+.|++|||||+.++.|+||+++.+..+. |.
T Consensus 3 ~~~~~~G~L~K~g~~-~k~WkkR~fvL~~~~~L~yyk~~~~~~~~-----------------g~---------------- 48 (112)
T 3aj4_A 3 MAFVKSGWLLRQSTI-LKRWKKNWFDLWSDGHLIYYDDQTRQNIE-----------------DK---------------- 48 (112)
T ss_dssp CSCSEEEEEEEECSS-SCCEEEEEEEECTTSEEEEESSTTCCSEE-----------------EE----------------
T ss_pred cceeEEEEEEeeCCC-CCCeeceEEEEeeCCEEEEEcCCCCCCCC-----------------cc----------------
Confidence 357899999999764 48999999999667789999987653110 00
Q ss_pred cccceeEeecCcc-eeec--CCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTS-TIKP--DADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~~~-~v~~--~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.......|++... .+.. .++...++|||.|+++ .++|+|+|+|++|+++||.+|+.|+
T Consensus 49 i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 49 VHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp EEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 0011112222211 1221 1233345799999987 6999999999999999999999886
No 36
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.76 E-value=1.1e-18 Score=147.69 Aligned_cols=94 Identities=20% Similarity=0.404 Sum_probs=75.6
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|+ ..+.|+||||||+++ .|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~---~~k~Wk~RwfvL~~~-~L~yyk~~~~~-------------------------------------- 43 (107)
T 2cof_A 6 SGLETSSYLNVL---VNSQWKSRWCSVRDN-HLHFYQDRNRS-------------------------------------- 43 (107)
T ss_dssp CCCTTCCEEEEE---ETTEEEEEEEEECSS-CEEEECSSTTC--------------------------------------
T ss_pred CCCcEeEEEEEe---cCCCcceEEEEEECC-EEEEEeCCccc--------------------------------------
Confidence 346789999999 458899999999755 68999887541
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
..+...|++..|.|.+.. +..++|||+|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus 44 -~~~~~~i~l~~~~v~~~~-~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 44 -KVAQQPLSLVGCEVVPDP-SPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp -SEEEEEECTTTCEEECCC-BTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred -CCCeeEEeccceEEEECC-CCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 134456777778777653 3567899999999 6999999999999999999999765
No 37
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.76 E-value=5.5e-18 Score=143.16 Aligned_cols=97 Identities=28% Similarity=0.398 Sum_probs=73.9
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecC-ceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSR-GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~-g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
..++++|||+|++.. .+.|++|||||.++ +.|+||+++.+.
T Consensus 5 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~~~~L~yyk~~~~~------------------------------------- 46 (109)
T 2i5f_A 5 GVIIKQGCLLKQGHR-RKNWKVRKFILREDPAYLHYYDPAGAE------------------------------------- 46 (109)
T ss_dssp CCEEEEEEEEEECTT-TCCEEEEEEEEETTTTEEEEECTTSCS-------------------------------------
T ss_pred CceeEEEEEEEcCCC-CCCceEEEEEEeCCCcEEEEECCCCCC-------------------------------------
Confidence 457899999999764 47899999999876 489999877542
Q ss_pred ccccceeEeecCcceeecCCCC-----CCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQ-----SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~-----~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|+|..+.+....+. .++++||.|.+++ ++|+|+|+|++|+++||.+|+.+|
T Consensus 47 ---~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 47 ---DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp ---SCSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ---CccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 2234455666655322111 2378999999997 679999999999999999999886
No 38
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.76 E-value=3.5e-18 Score=143.73 Aligned_cols=99 Identities=29% Similarity=0.624 Sum_probs=77.3
Q ss_pred ceeEEEEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 177 QTIKQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 177 ~~~keGyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
.++++|||+|+++. ..+.|++|||+|. ++.|+||+++.+.
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------ 44 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVS-RGLFYYYANEKSK------------------------------------ 44 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEE-TTEEEEESSTTCS------------------------------------
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEe-CCEEEEecCCCCC------------------------------------
Confidence 47899999999753 2388999999997 5668999887652
Q ss_pred cccccceeEeecCcceeecCC---CCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 254 DEKSVARHTVNLLTSTIKPDA---DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~---~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.+...|+|..+.+...+ ....++|||.|++++ ++|+|+|+|++|+++||.+|+.+|..+
T Consensus 45 ----~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l 107 (108)
T 1u5d_A 45 ----QPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL 107 (108)
T ss_dssp ----SCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 12344556666655431 234568999999998 999999999999999999999999764
No 39
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.76 E-value=3.9e-18 Score=148.25 Aligned_cols=97 Identities=24% Similarity=0.471 Sum_probs=76.8
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|+++ ..+.|++|||||.+ +.|+||+++.+.
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~-~~L~yy~~~~~~-------------------------------------- 55 (126)
T 1fao_A 16 SLGTKEGYLTKQGG-LVKTWKTRWFTLHR-NELKYFKDQMSP-------------------------------------- 55 (126)
T ss_dssp CTTCEEEEEEEECS-SSCCEEEEEEEEET-TEEEEESSTTCS--------------------------------------
T ss_pred CCccEEEEEEEcCC-CCCCcccEEEEEEC-CEEEEeCCCCCC--------------------------------------
Confidence 35689999999975 44889999999975 559999877652
Q ss_pred cccceeEeecCcce-eecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTST-IKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 256 ~~~~~~~i~l~~~~-v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+...|+|..+. +.+. +..+++|||.|++++++|+|+|+|++|+++||.+|+.+|..
T Consensus 56 --~~~g~i~L~~~~~v~~~-~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 56 --EPIRILDLTECSAVQFD-YSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp --SCSEEEEGGGCCEEEEE-CSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --CceeEEEccceEEEEec-ccCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 123445565555 3332 34567899999999999999999999999999999999976
No 40
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.76 E-value=7.3e-18 Score=145.66 Aligned_cols=99 Identities=28% Similarity=0.494 Sum_probs=77.3
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|+++...+.|++|||||. ++.|+||+++.+.
T Consensus 9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~~-------------------------------------- 49 (123)
T 1upq_A 9 LPVHIRGWLHKQDSSGLRLWKRRWFVLS-GHCLFYYKDSREE-------------------------------------- 49 (123)
T ss_dssp SCEEEEEEEEEECSSSSCCEEEEEEEEE-TTEEEEESSTTCC--------------------------------------
T ss_pred CCceEEEEEEeeCCCCCCCceeEEEEEe-CCEEEEECCCCCc--------------------------------------
Confidence 3478999999998655589999999997 5679999887652
Q ss_pred cccceeEeecCcceeecCC--CCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDA--DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~--~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+...|+|..+.|.... ....++|||.|.+++ ++|+|+|+|++|+++||.+|+.++..
T Consensus 50 --~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 50 --SVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp --SCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred --ccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 12234556566665542 234578999999987 99999999999999999999998853
No 41
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.76 E-value=2e-18 Score=150.07 Aligned_cols=105 Identities=19% Similarity=0.312 Sum_probs=75.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++.. .+.|+||||||++++.|+||+++.+..+.+ .
T Consensus 6 ~~~~~~G~L~K~g~~-~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g-----------------~---------------- 51 (125)
T 1unq_A 6 VAIVKEGWLHKRGEY-IKTWRPRYFLLKNDGTFIGYKERPQDVDQR-----------------E---------------- 51 (125)
T ss_dssp GCEEEEEEEEEECSS-SCCEEEEEEEEETTSEEEEESSCCCSHHHH-----------------T----------------
T ss_pred CCeeEEeeEEeccCC-ccCccCcEEEEecCCEEEEEeCCCCCCCCc-----------------e----------------
Confidence 457899999999764 489999999998788899999876531100 0
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEe----CCeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIIS----PTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t----~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.....+.+..+.+.. .+..++|||+|.+ +.++|+|+|+|++|+++||.+|+.++...-.
T Consensus 52 --i~L~~~~~~~~~~~~--~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~ 114 (125)
T 1unq_A 52 --APLNNFSVAQCQLMK--TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK 114 (125)
T ss_dssp --SCSEEEECTTCEEEE--ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --eEccceeEEeeeecc--cccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence 011112222222221 1235789999996 4589999999999999999999999976543
No 42
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.75 E-value=5e-18 Score=145.30 Aligned_cols=97 Identities=23% Similarity=0.472 Sum_probs=72.4
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEec-CceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDS-RGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~-~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
..++++|||+|++.. .+.|++|||||+. ++.|+||+++.+..+
T Consensus 6 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~----------------------------------- 49 (117)
T 1v5u_A 6 SGRSYEGILYKKGAF-MKPWKARWFVLDKTKHQLRYYDHRMDTEC----------------------------------- 49 (117)
T ss_dssp CSSSEEEEEEECCCS-SSCCEEEEEEEETTTTEEEEESSSSCSSC-----------------------------------
T ss_pred CCccEEEEEEecCCC-CCCceeeEEEEECCCCEEEEeecCCCCcc-----------------------------------
Confidence 356899999999765 4899999999985 577999998765321
Q ss_pred ccccceeEeecCccee-ecC------CCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTI-KPD------ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v-~~~------~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
...|+|..+.+ .+. ++...++|||+|.++.++|+|+|+|++|+++||.+|+.+|
T Consensus 50 -----~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i 110 (117)
T 1v5u_A 50 -----KGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110 (117)
T ss_dssp -----CCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred -----ceEEEccCcEEEeecCccccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHh
Confidence 12233333322 111 1234567999999999999999999999999999998765
No 43
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.75 E-value=1e-17 Score=143.25 Aligned_cols=97 Identities=29% Similarity=0.511 Sum_probs=75.1
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++.. .+.|++|||||.++ .|+||+++.+.
T Consensus 6 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~-~L~yy~~~~~~-------------------------------------- 45 (118)
T 1v89_A 6 SGPIKMGWLKKQRSI-VKNWQQRYFVLRAQ-QLYYYKDEEDT-------------------------------------- 45 (118)
T ss_dssp SCEEEEEEEEEECSS-SSCEEEEEEEEETT-EEEEESSSSCC--------------------------------------
T ss_pred CCCcEEEEEEecCCC-CCCccEEEEEEECC-EEEEEeCCCCC--------------------------------------
Confidence 457899999999754 47899999999854 68999887652
Q ss_pred cccceeEeecCcceeecC-C-CCCCCcceEEEEe--------CCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPD-A-DQSDLRFCFRIIS--------PTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~-~-~~~~r~fcF~I~t--------~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+...|+|..+.+... . ....++|||+|++ +.++|+|+|+|++|+++||.+|+.+|.
T Consensus 46 --~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 46 --KPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp --SCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --CceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence 1234455665555421 1 2345689999998 679999999999999999999999985
No 44
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=143.67 Aligned_cols=97 Identities=24% Similarity=0.436 Sum_probs=75.1
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|+++...+.|++|||||. ++.|+||+++.+.
T Consensus 20 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 60 (122)
T 2yry_A 20 APVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKEE-------------------------------------- 60 (122)
T ss_dssp CCEEEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTCC--------------------------------------
T ss_pred CCccEEEEEEEECCCCCCCcEEEEEEEe-CCEEEEECCCCCC--------------------------------------
Confidence 4588999999997655689999999996 5679999887653
Q ss_pred cccceeEeecCcceeecC--CCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPD--ADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~--~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|+|..+.|... .+...++|||+|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus 61 --~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 61 --SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp --SCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred --CcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1223455555554322 233467899999876 5999999999999999999999886
No 45
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=146.62 Aligned_cols=99 Identities=21% Similarity=0.396 Sum_probs=76.9
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...++++|||+|++....+.|++|||||+ ++.|+||+++.+.
T Consensus 18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~------------------------------------- 59 (128)
T 2dkp_A 18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLS-DLCLFYYRDEKEE------------------------------------- 59 (128)
T ss_dssp TSCCCEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTCC-------------------------------------
T ss_pred CCCcEEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEECCCCCc-------------------------------------
Confidence 34578999999998755689999999997 5679999887652
Q ss_pred ccccceeEeecCcceeecCC--CCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDA--DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~--~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+...|+|..+.|.... +...++|||+|++++ ++|+|+|+|++|+++||.+|+.|+.
T Consensus 60 ---~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 60 ---GILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp ---SEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred ---ccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 22344556556655432 223678999999986 9999999999999999999998763
No 46
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.75 E-value=1e-17 Score=145.36 Aligned_cols=96 Identities=25% Similarity=0.529 Sum_probs=75.8
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++++|||+|+++.. +.|++|||||.+ +.|+||+++.+.
T Consensus 4 ~~~~~G~L~K~g~~~-~~Wk~R~fvL~~-~~L~yy~~~~~~--------------------------------------- 42 (127)
T 1fgy_A 4 NPDREGWLLKLGGRV-KTWKRRWFILTD-NCLYYFEYTTDK--------------------------------------- 42 (127)
T ss_dssp SCSEEEEEEEECSSS-CCEEEEEEEEET-TEEEEESSTTCS---------------------------------------
T ss_pred CCceEeEEEEECCCC-CCeEEEEEEEEC-CEEEEeCCCCCC---------------------------------------
Confidence 468999999997654 889999999974 569999877552
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC----------------------eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT----------------------KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~----------------------rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.+.|+|..+.+... ++..+++||+|.+++ |+|+|+|+|++|+++||.+|+.+|.
T Consensus 43 -~~~g~i~L~~~~v~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 43 -EPRGIIPLENLSIREV-LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp -SCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -CcceEEECCceEEEEc-cCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 2234566666666543 234779999999874 7999999999999999999999986
Q ss_pred H
Q 011187 315 S 315 (491)
Q Consensus 315 ~ 315 (491)
.
T Consensus 121 ~ 121 (127)
T 1fgy_A 121 R 121 (127)
T ss_dssp H
T ss_pred c
Confidence 4
No 47
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.75 E-value=1.3e-17 Score=145.64 Aligned_cols=98 Identities=28% Similarity=0.392 Sum_probs=76.2
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecC-ceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSR-GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~-g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
..++++|||+|++.. .+.|++|||||.++ +.|+||+++.+.
T Consensus 16 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~~~~~L~yy~~~~~~------------------------------------- 57 (129)
T 1x05_A 16 GVIIKQGCLLKQGHR-RKNWKVRKFILREDPAYLHYYDPAGAE------------------------------------- 57 (129)
T ss_dssp SEEEEEEEEEECCSS-CCCCEEEEEEEEETTTEEEEECSSCCS-------------------------------------
T ss_pred CCceEEEEEEecCCC-CCCCeeEEEEEeCCCCEEEEECCCCCC-------------------------------------
Confidence 468999999999764 47899999999876 489999877542
Q ss_pred ccccceeEeecCcceeecCCCC-----CCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQ-----SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~-----~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+...|+|..|.+....+. .+++|||+|++++ ++|+|+|+|++|+++||.+|+.++.
T Consensus 58 ---~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 120 (129)
T 1x05_A 58 ---DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 120 (129)
T ss_dssp ---SCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred ---cceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 2234566666665432111 2378999999986 7899999999999999999999885
No 48
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.75 E-value=1.1e-17 Score=143.20 Aligned_cols=95 Identities=18% Similarity=0.367 Sum_probs=73.6
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++....+.|+||||||+ ++.|+||+++.+..
T Consensus 6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~~~------------------------------------- 47 (115)
T 2cod_A 6 SGKVKSGWLDKLSPQGKRMFQKRWVKFD-GLSISYYNNEKEMY------------------------------------- 47 (115)
T ss_dssp SCCCEEEEEEECCSSSSSCCEEEEEEEC-SSEEEEEESSCCSS-------------------------------------
T ss_pred CCccEEEEEEEcCCCCCCCCceEEEEEE-CCEEEEEcCCCCcc-------------------------------------
Confidence 4578999999998745689999999997 55689999876521
Q ss_pred cccceeEeecCcc-eeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTS-TIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~-~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
+...|+|..+ .|... + ++||.|++++|+|+|+|+|++|+++||.+|+.++...
T Consensus 48 ---~~g~i~l~~~~~v~~~----~-~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 48 ---SKGIIPLSAISTVRVQ----G-DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp ---CCCEEETTTEEEEEEE----T-TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCEEECCcceEEEeC----C-CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 1223444443 23321 1 6999999999999999999999999999999998543
No 49
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.74 E-value=3.9e-18 Score=142.95 Aligned_cols=94 Identities=24% Similarity=0.447 Sum_probs=73.1
Q ss_pred EEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccccc
Q 011187 180 KQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKSVA 259 (491)
Q Consensus 180 keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~~~ 259 (491)
++|||+|++.. .+.|++|||||+ ++.|+||+++.+.. ..+
T Consensus 1 ~eG~L~K~g~~-~k~Wk~R~fvL~-~~~L~Yy~~~~~~~--------------------------------------~~~ 40 (103)
T 3rcp_A 1 MEGVLYKWTNY-LTGWQPRWFVLD-NGILSYYDSQDDVC--------------------------------------KGS 40 (103)
T ss_dssp CEEEEEEECCT-TTCEEEEEEEEE-TTEEEEESSCC-----------------------------------------CCC
T ss_pred CceEEEEccCC-CCCeeceEEEEE-CCEEEEEecCCccc--------------------------------------CCc
Confidence 48999999765 488999999997 67799999886520 012
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.+.|+|..+.|.+.+ +.+++|.|+++ .++|+|+|+|++|+++||.+|+.|+..+
T Consensus 41 ~g~i~L~~~~v~~~~---~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 41 KGSIKMAVCEIKVHS---ADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp SCEEEGGGCEEECCT---TCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred ccEEEeeeeEEEEcC---CCCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 345667777776643 24789999998 6999999999999999999999887543
No 50
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=141.89 Aligned_cols=97 Identities=24% Similarity=0.436 Sum_probs=75.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|+++...+.|++|||+|. ++.|+||+++.+.
T Consensus 9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~~-------------------------------------- 49 (117)
T 2d9y_A 9 APVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKEE-------------------------------------- 49 (117)
T ss_dssp CCCCEEEEEEEECTTSSSCEEEEEEEEE-TTEEEEESSTTCC--------------------------------------
T ss_pred CCeeEEEEEEEeCCCCCCCceEEEEEEC-CCEEEEECCCCCC--------------------------------------
Confidence 4578999999997555689999999997 5669999887652
Q ss_pred cccceeEeecCcceeecC--CCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPD--ADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~--~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|+|..+.|... .+...++|||+|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus 50 --~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 50 --SILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp --SCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred --CcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1234455666655432 133567899999865 5999999999999999999999876
No 51
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.74 E-value=1.2e-17 Score=144.86 Aligned_cols=97 Identities=16% Similarity=0.346 Sum_probs=75.2
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
++++|||+|++. ..+.|++|||||+++ .|+||+++.... +.
T Consensus 6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~-~L~yyK~~~~~~-------------------------------------d~ 46 (120)
T 4a6h_A 6 EIKSGFLERRSK-FLKSYSKGYYVLTPN-FLHEFKTADRKK-------------------------------------DL 46 (120)
T ss_dssp CSEEEEEEEEET-TTTEEEEEEEEECSS-EEEEESSCCTTT-------------------------------------CC
T ss_pred ccEEEEEEEcCC-CCCCCccEEEEEeCC-EEEEEcCCCcCc-------------------------------------CC
Confidence 789999999976 458999999999877 689998765310 01
Q ss_pred cceeEeecCcceeecCCCCCC--------CcceEEEEeCC-------eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 258 VARHTVNLLTSTIKPDADQSD--------LRFCFRIISPT-------KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~~~--------r~fcF~I~t~~-------rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+...|.|..|+|....+... +.++|.|...+ ++|+|+|+|.+||++||++|+.++
T Consensus 47 ~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 47 VPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp SCSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred CceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 344567788888876433322 68899999876 599999999999999999999875
No 52
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.74 E-value=1.4e-17 Score=149.17 Aligned_cols=102 Identities=24% Similarity=0.538 Sum_probs=76.9
Q ss_pred cceeEEEEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 176 VQTIKQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 176 ~~~~keGyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
..++++|||+|++.. ..+.|++|||||+ ++.|+||+++.+.
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~~----------------------------------- 58 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKDK----------------------------------- 58 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEE-TTEEEEESSTTCS-----------------------------------
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEE-CCEEEEEcCCCCc-----------------------------------
Confidence 457899999999754 3479999999997 5679999887652
Q ss_pred ccccccceeEeecCcceeecCCC---CCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 253 HDEKSVARHTVNLLTSTIKPDAD---QSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~---~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.+.+.|+|..+++...++ ...++|||.|++++ ++|+|+|+|++|+++||.+|+.+|..+-.
T Consensus 59 -----~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 123 (148)
T 1u5f_A 59 -----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS 123 (148)
T ss_dssp -----SCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred -----ccceEEEcCCcEEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence 123445566666654321 34567999999997 99999999999999999999999875533
No 53
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=151.23 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=70.7
Q ss_pred cceeEEEEEeecCCCc----ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 176 VQTIKQGYLSKRSSNL----RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~----~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
..+++||||+||+.+. .++|++|||||++ +.|+||+++.+...
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~-~~L~Yyk~~~~~~~-------------------------------- 59 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTK-SMLTYYEGRAEKKY-------------------------------- 59 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEES-SEEEEECCCSSSCC--------------------------------
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEEC-CEEEEEeccCcccc--------------------------------
Confidence 3589999999997642 3579999999975 45888887654210
Q ss_pred cccccccceeEeecCcc-eeecC-----CCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLTS-TIKPD-----ADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~-~v~~~-----~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..+.|+|..+ .|... .....+.++|.|++++|+|+|+|+|++|+++||+||+.+|.
T Consensus 60 -------~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 60 -------RKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp -------CCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred -------cccEEEEeeeEEEEeccccccCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 1112222211 11111 11234679999999999999999999999999999999986
No 54
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=5.7e-18 Score=147.74 Aligned_cols=98 Identities=29% Similarity=0.461 Sum_probs=73.4
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecC-ceEEEEecC-CCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSR-GLLYYYRKP-WSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~-g~L~Yyk~~-~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
..++++|||+|++.. .+.|+||||||+++ +.|+||+++ .+.
T Consensus 16 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~d~~~L~yy~~~~~~~------------------------------------ 58 (129)
T 1x1g_A 16 GTVVKQGYLAKQGHK-RKNWKVRRFVLRKDPAFLHYYDPSKEEN------------------------------------ 58 (129)
T ss_dssp SEEEEEEEEEEECSS-SSSEEEEEEEEEESSCEEEEECSSSCCS------------------------------------
T ss_pred CCEEEEEEEEEECCC-CCCeeeEEEEEeCCCCeEEEeCCCCcCC------------------------------------
Confidence 358999999999765 58999999999864 789999886 331
Q ss_pred cccccceeEeecCcceeecCCCC--------CCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQ--------SDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~--------~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+...|+|..|.|....+. ..++|||+|++++ ++|+|+|+|++|+++||.+|+.+|.
T Consensus 59 ----~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 59 ----RPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp ----SCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred ----ccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 1222344544444322111 1168999999997 7899999999999999999998874
No 55
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=1.6e-17 Score=149.07 Aligned_cols=103 Identities=23% Similarity=0.340 Sum_probs=80.1
Q ss_pred cceeEEEEEeecCC-----CcccCceEEEEEEecC--c--eEEEEecCC-CCCCcCCCccccccCCCCCccccccccccc
Q 011187 176 VQTIKQGYLSKRSS-----NLRADWKRRFFVLDSR--G--LLYYYRKPW-SWNSAAGSQSSIQRSNPSETSQGLLSRWLS 245 (491)
Q Consensus 176 ~~~~keGyL~Krs~-----~~~k~WkrRwFvL~~~--g--~L~Yyk~~~-~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~ 245 (491)
..++++|||+|++. ...+.|+||||||.++ | .|+||+++. +.
T Consensus 16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~---------------------------- 67 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK---------------------------- 67 (150)
T ss_dssp CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSS----------------------------
T ss_pred CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCC----------------------------
Confidence 45789999999974 2457899999999864 2 788888865 21
Q ss_pred cccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 246 SHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 246 s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.+...|+|..|.+... ....++|||+|++++ ++|+|+|+|++|+++||.+|+.+|......
T Consensus 68 ------------~~~g~I~L~~~~~~~~-~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~~ 129 (150)
T 1wg7_A 68 ------------EPKGSIFLDSCMGVVQ-NNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEA 129 (150)
T ss_dssp ------------CCSEEECTTTCCEECC-CCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CcCcEEecccCEEEec-CCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhhHH
Confidence 2234566666666553 234678999999996 899999999999999999999999866544
No 56
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.73 E-value=1.1e-17 Score=140.64 Aligned_cols=98 Identities=17% Similarity=0.343 Sum_probs=72.5
Q ss_pred EEEEEeecCC-------CcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 180 KQGYLSKRSS-------NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 180 keGyL~Krs~-------~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
++|||+|++. ...+.|++|||||+ ++.|+||+++.+...+
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~-~~~L~yyk~~~~~~~~-------------------------------- 47 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVIN-NQEMGFYKDAKSAASG-------------------------------- 47 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEE-TTEEEEESSHHHHHHT--------------------------------
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEE-CCEEEEEeCCcccccC--------------------------------
Confidence 4899999971 34588999999997 5669999876531000
Q ss_pred ccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
....+...|++..+.+.+.++...++|||+|++++ ++|+|+|+|++|+++||.+|+.|
T Consensus 48 --~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 48 --IPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp --CCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred --CCCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 00012334667666666555556789999999887 99999999999999999999864
No 57
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.73 E-value=4.9e-18 Score=148.05 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=75.4
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++|+|||+|++.. .+.|++|||||.++. |+||+++.........+
T Consensus 10 ~~~~k~G~L~K~g~~-~k~Wk~RwfVL~~~~-L~yyk~~~~~~~e~~pl------------------------------- 56 (124)
T 2w2x_D 10 DEHKQQGELYMWDSI-DQKWTRHFCAIADAK-LSFSDDIEQTMEEDNPL------------------------------- 56 (124)
T ss_dssp ---CCEEEEEEEETT-TTEEEEEEEEEETTE-EEEEEEHHHHHHCSSCC-------------------------------
T ss_pred hhcceeEEEEEECCC-CCCceEeEEEEECCE-EEEEccccccccccccc-------------------------------
Confidence 346899999999754 488999999998665 88888743210000000
Q ss_pred cccceeEeecCcceeecCCCC-CCCcceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQ-SDLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~-~~r~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
-....+.|+|..|.|....+. ..++|+|+|.++. ++|+|+|+|++|+++||.||+.++..+
T Consensus 57 g~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 57 GSLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp CCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred CCccccEEECCCCEEEEccCCcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 012345677888887664332 4678999999874 689999999999999999999987543
No 58
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=145.85 Aligned_cols=101 Identities=25% Similarity=0.431 Sum_probs=73.6
Q ss_pred ceeEEEEEeec--CCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 177 QTIKQGYLSKR--SSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 177 ~~~keGyL~Kr--s~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
.++++|||+|+ ++. .+.|+||||||++ +.|+||+++.+..
T Consensus 4 ~v~~~G~L~K~~~~~~-~~~WkrRwfvL~~-~~L~yyk~~~d~~------------------------------------ 45 (134)
T 2y7b_A 4 SVEERGFLTIFEDVSG-FGAWHRRWCVLSG-NCISYWTYPDDEK------------------------------------ 45 (134)
T ss_dssp CCCEEEEEEEEEEETT-EEEEEEEEEEEET-TEEEEESSHHHHT------------------------------------
T ss_pred CceEEeeEEEEcCCCC-CCCcEEEEEEEEC-CEEEEECCCCccc------------------------------------
Confidence 47899999998 543 4789999999975 5699998653310
Q ss_pred ccccceeEeecCcce---eecCCC-CCCCcceEEEEe--CC------------------eEEEEEeCCHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTST---IKPDAD-QSDLRFCFRIIS--PT------------------KVYTLQAENTLDQMDWIEKIN 310 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~---v~~~~~-~~~r~fcF~I~t--~~------------------rt~~lqAeSe~e~~~WI~ai~ 310 (491)
...+...|+|..|. |.+.+. ...++|||+|.+ |. ++|+|+|+|++|+++||.+|+
T Consensus 46 -~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~ 124 (134)
T 2y7b_A 46 -RKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLN 124 (134)
T ss_dssp -TSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred -ccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHH
Confidence 01233456666665 333322 136789999998 33 479999999999999999999
Q ss_pred HHHHHH
Q 011187 311 GVIASL 316 (491)
Q Consensus 311 ~ai~~~ 316 (491)
.+|..+
T Consensus 125 ~~i~~~ 130 (134)
T 2y7b_A 125 QVLVDI 130 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999764
No 59
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.72 E-value=5.1e-17 Score=139.23 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=71.8
Q ss_pred ceeEEEEEeecCCCccc-CceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSNLRA-DWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k-~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
.++++|||+|+.++..+ +|++|||||+++. |+||+++.+.
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~-L~yyKd~~ek-------------------------------------- 51 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAEN-LSWYKDDEEK-------------------------------------- 51 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEESSE-EEEESSTTCS--------------------------------------
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEeccc-eeeecCCccc--------------------------------------
Confidence 37999999996555545 5999999998554 9999988763
Q ss_pred cccceeEeecCcceeecCCC-CCCCcceEEEEeCC--------eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDAD-QSDLRFCFRIISPT--------KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~-~~~r~fcF~I~t~~--------rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
.+...|.|....|+.... ...++|||+|.+++ ++|.|.|+|.+|+++||++|..|
T Consensus 52 --e~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 52 --EKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp --CEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred --ccceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 233445566666654321 12678999999976 49999999999999999999543
No 60
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=1.7e-17 Score=143.59 Aligned_cols=99 Identities=23% Similarity=0.462 Sum_probs=74.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||+|++.. .+.|++|||||++ +.|+||+++.+..
T Consensus 12 ~~~~~~G~L~K~g~~-~~~Wk~R~fvL~~-~~L~yy~~~~~~~------------------------------------- 52 (125)
T 1eaz_A 12 SAVIKAGYCVKQGAV-MKNWKRRYFQLDE-NTIGYFKSELEKE------------------------------------- 52 (125)
T ss_dssp CCCSEEEEEEEECTT-TCCEEEEEEEECS-SEEEEESSTTCSS-------------------------------------
T ss_pred CCccEEEEEEEeCCC-CCCcceEEEEEeC-CEEEEEcCCCCCc-------------------------------------
Confidence 457899999999654 4889999999975 5689998876531
Q ss_pred cccceeEeecCcce-eecCC--CCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTST-IKPDA--DQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~-v~~~~--~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
+...|+|..+. |.... +...++|||+|++++++|+|+|+|++|+++||.+|+.+|...
T Consensus 53 ---~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 53 ---PLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp ---CSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred ---ceeEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 12233444332 22211 123568999999999999999999999999999999999754
No 61
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.71 E-value=1.6e-17 Score=152.70 Aligned_cols=101 Identities=16% Similarity=0.323 Sum_probs=68.2
Q ss_pred ceeEEEEEeecCCC----cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 177 QTIKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 177 ~~~keGyL~Krs~~----~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
.++|+|||.|++.+ ..+.|++|||||++ ..|+||+++.+...
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~-~~L~Yyk~~~~~~~--------------------------------- 47 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTV-HKLSYYEYDFERGR--------------------------------- 47 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECS-SEEEEEEEETTTTE---------------------------------
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcC-CEEEEEecCCccCC---------------------------------
Confidence 36899999998643 24789999999975 46899987422100
Q ss_pred ccccccceeEeecCcce-eecC---CC-CCC---------------------CcceEEEEeCCeEEEEEeCCHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTST-IKPD---AD-QSD---------------------LRFCFRIISPTKVYTLQAENTLDQMDWI 306 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~-v~~~---~~-~~~---------------------r~fcF~I~t~~rt~~lqAeSe~e~~~WI 306 (491)
.....+.|+|..+. |... .+ ... ++|+|+|++++++|+|+|+|++|+++||
T Consensus 48 ---~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi 124 (169)
T 1btk_A 48 ---RGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWI 124 (169)
T ss_dssp ---EEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHH
T ss_pred ---CCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHH
Confidence 00122233333221 1111 00 001 1299999999999999999999999999
Q ss_pred HHHHHHHH
Q 011187 307 EKINGVIA 314 (491)
Q Consensus 307 ~ai~~ai~ 314 (491)
.+|+.+|.
T Consensus 125 ~aI~~~i~ 132 (169)
T 1btk_A 125 HQLKNVIR 132 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999885
No 62
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.71 E-value=3e-17 Score=150.16 Aligned_cols=99 Identities=21% Similarity=0.356 Sum_probs=69.5
Q ss_pred eeEEEEEee----------cCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccc
Q 011187 178 TIKQGYLSK----------RSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSH 247 (491)
Q Consensus 178 ~~keGyL~K----------rs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~ 247 (491)
++++|||++ ++ ...+.|++|||||++ +.|+||+++.+...
T Consensus 3 v~~eG~L~~k~~~~~~gkK~g-~~~k~WkkRwfvL~~-~~L~yyk~~~~~~~---------------------------- 52 (168)
T 2j59_M 3 AAKEGWLHFRPLVTDKGKRVG-GSIRPWKQMYVVLRG-HSLYLYKDKREQTT---------------------------- 52 (168)
T ss_dssp CCEEEEEEEEECC-------------CCEEEEEEEET-TEEEEESCTTCC------------------------------
T ss_pred CcEEEEEeeeeecccCCcccC-CCCCCceEEEEEEeC-CEEEEEECCccccc----------------------------
Confidence 679999994 33 345889999999975 56999988754100
Q ss_pred cCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 248 YHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 248 ~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
...+...|.+..|.+.+..+...++|||+|++++++|+|+|+|++|+++||.+|+.++.
T Consensus 53 --------~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 53 --------PSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp --------------CEECSSCEEEECSSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred --------ccCCceEecccceEEEeccccCCCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 01122234444455554445567899999999999999999999999999999998874
No 63
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.71 E-value=5e-17 Score=154.67 Aligned_cols=99 Identities=22% Similarity=0.550 Sum_probs=76.9
Q ss_pred cceeEEEEEeecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 176 VQTIKQGYLSKRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 176 ~~~~keGyL~Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
..++++|||+|++.. ..+.|+||||||+ ++.|+||+++.+.
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~-~~~L~Yyk~~~~~----------------------------------- 147 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKDK----------------------------------- 147 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEE-TTEEEEESSTTCS-----------------------------------
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEE-CCEEEEEcCCCCc-----------------------------------
Confidence 458999999999764 3579999999997 5569999987652
Q ss_pred ccccccceeEeecCcceeecCC---CCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDA---DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~---~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+.+.|+|..+.+...+ ....++|||.|++++ |+|+|+|+|++|+++||.+|+.+|..
T Consensus 148 -----~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 148 -----QQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp -----SCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred -----cceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 12234556555554422 233568999999996 99999999999999999999999864
No 64
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.70 E-value=3.9e-17 Score=141.64 Aligned_cols=106 Identities=14% Similarity=0.363 Sum_probs=76.7
Q ss_pred ceeEEEEEeecCC------C-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccC
Q 011187 177 QTIKQGYLSKRSS------N-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYH 249 (491)
Q Consensus 177 ~~~keGyL~Krs~------~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~ 249 (491)
.+.|+|||.|+.. + ..+.|++|||||+++ .|+||+++.+..+.. ++
T Consensus 7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~-~L~~yk~~~~~~~~~----------------~~---------- 59 (122)
T 1dro_A 7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAG-RISFYKDQKGYKSNP----------------EL---------- 59 (122)
T ss_dssp SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSS-CCBEESSSSHHHHCT----------------TC----------
T ss_pred ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECC-EEEEEeCCcccccCC----------------Cc----------
Confidence 4679999987642 1 458999999999755 588888876532100 00
Q ss_pred CCcccccccceeEeecCcceeecCCCCCCCcceEEEEeC-CeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 250 GGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISP-TKVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 250 ~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-~rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
...+...|+|..+.+.+..+...|+|||+|+++ .++|+|||+|++||++||.+|+.+|..
T Consensus 60 ------~~~~~~~i~L~~~~v~~~~d~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 60 ------TFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp ------CSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred ------ccCCCceEECCCCEEEeCCCCCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 001123456767777665555678999999975 599999999999999999999998853
No 65
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=136.92 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=77.9
Q ss_pred ceeEEEEEeec-----CCCc-ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCC
Q 011187 177 QTIKQGYLSKR-----SSNL-RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHG 250 (491)
Q Consensus 177 ~~~keGyL~Kr-----s~~~-~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~ 250 (491)
.+.|+|||.++ +++. .+.|++|||||++ +.|+||+++.....++. ..+
T Consensus 7 ~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~-~~L~~yKd~~~~~~~~~-------------------------~~~ 60 (124)
T 3pp2_A 7 TLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEG-GVLTFFKDSKTSAAGGL-------------------------RQP 60 (124)
T ss_dssp --CEEEEEEEEEEEETTEECSSCCCEEEEEEEET-TEEEEESCSBCC---CB-------------------------CCG
T ss_pred cEEEEEEEEEEEeccCCccCCCCCceEEEEEEEC-CEEEEEecCccccccCc-------------------------cCc
Confidence 47899999976 3332 3589999999985 45888988765311000 000
Q ss_pred CcccccccceeEeecCcceeecCC-CCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 251 GVHDEKSVARHTVNLLTSTIKPDA-DQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 251 ~v~~~~~~~~~~i~l~~~~v~~~~-~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.....+...|+|..|.+.+.+ +...|+|+|+|.+++ ++|+|||+|++||.+||.+|+.||+
T Consensus 61 ---~~~~~~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 61 ---SKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp ---GGGCSEEEEEECTTCEEEECCGGGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred ---ccccCCcceEEcCCCEEEecccccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 000124466788888887764 566789999999876 7999999999999999999999985
No 66
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.67 E-value=3.4e-16 Score=153.74 Aligned_cols=108 Identities=22% Similarity=0.348 Sum_probs=79.4
Q ss_pred cceeEEEEEe--------ecCCC---cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccc
Q 011187 176 VQTIKQGYLS--------KRSSN---LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWL 244 (491)
Q Consensus 176 ~~~~keGyL~--------Krs~~---~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 244 (491)
..++|+|||+ |+++. ..+.|++|||||+++ .|+||+++.....
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~-~L~yyK~~~~~~~------------------------- 62 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGC-TLLFYETYGKNST------------------------- 62 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETT-EEEEESSCCC----------------------------
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCC-EEEEEecCccccc-------------------------
Confidence 4578999999 44332 168999999999865 5888988642100
Q ss_pred ccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEe-CCeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 245 SSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIIS-PTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 245 ~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t-~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
+....+...|+|..|.+....+...++|||+|++ ..++|+|+|+|++|+++||.+|+.++.....
T Consensus 63 ---------~~~~~p~g~I~L~~~~v~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~~ 128 (263)
T 3a8p_A 63 ---------EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFA 128 (263)
T ss_dssp ------------CCCSEEEECTTCEEEECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccccCccceEEcCCcEEEECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhccc
Confidence 0011234556777777765445556899999999 4699999999999999999999999987653
No 67
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.62 E-value=1e-15 Score=158.34 Aligned_cols=100 Identities=19% Similarity=0.423 Sum_probs=73.8
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++|+|||.|++....+.|++|||||+ ++.|+||+++.+..+
T Consensus 267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~-~~~L~YYk~~~d~~~------------------------------------ 309 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQTEGFRKRWFTMD-DRRLMYFKDPLDAFA------------------------------------ 309 (386)
T ss_dssp CCCSEEEEEEECCTTSCSCCEEEEEEEE-TTEEEEESSTTCSBC------------------------------------
T ss_pred cccceeeeEEEECCCCCCCCcccEEEEE-CCEEEEEecCCCccc------------------------------------
Confidence 3578999999998776689999999998 667999998876322
Q ss_pred cccceeEeecCcc----eeec-CCCCC---CCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTS----TIKP-DADQS---DLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~----~v~~-~~~~~---~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.+.|.|..+ .|.. .+... .++|||+|++++|+|+|+|+|++|+++||.||+.+|...
T Consensus 310 ----~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~p 374 (386)
T 3lju_X 310 ----RGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRP 374 (386)
T ss_dssp ----SEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred ----ceEEEeecceeeeeecccCCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 112222111 1111 11111 236999999999999999999999999999999999753
No 68
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.62 E-value=1.6e-15 Score=145.95 Aligned_cols=96 Identities=25% Similarity=0.449 Sum_probs=75.9
Q ss_pred cceeEEEEEeecCCCc----ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 176 VQTIKQGYLSKRSSNL----RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~----~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
..++++|||.|++... .+.|++|||||+ ++.|+||+++.+.
T Consensus 56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~-~~~L~Yyk~~~~~---------------------------------- 100 (228)
T 3tfm_A 56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLR-QSKLMYFENDSEE---------------------------------- 100 (228)
T ss_dssp CCSSEEEEEEECGGGCSSSCGGGCEEEEEEEC-SSEEEEESSTTCC----------------------------------
T ss_pred CCcceEEEEEEECCCcCCcccCCceEEEEEEe-CCEEEEEeCCCCc----------------------------------
Confidence 4578999999997642 388999999997 5679999987652
Q ss_pred cccccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.+.|+|..+.+... ...++|||+|++++++|+|+|+|++|+++||.+|+.+|.
T Consensus 101 ------~~~g~I~L~~~~~v~~--~~~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 101 ------KLKGTVEVRSAKEIID--NTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp ------SEEEEEEGGGCSEEEE--ETTTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ------ceeEEEEcCCCEEecc--CCCCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 2234455655554322 235789999999999999999999999999999999996
No 69
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.61 E-value=8.4e-16 Score=151.00 Aligned_cols=100 Identities=22% Similarity=0.407 Sum_probs=72.8
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCc------eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccC
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRG------LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYH 249 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g------~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~ 249 (491)
..++++|||.|+ +.|+||||||++++ .|+||+++.+...+
T Consensus 8 ~~v~k~G~L~K~-----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~----------------------------- 53 (264)
T 1qqg_A 8 SDVRKVGYLRKP-----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHK----------------------------- 53 (264)
T ss_dssp -CEEEEEEEECT-----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTT-----------------------------
T ss_pred CCccEEEEEEEC-----CCCEeEEEEEECCCCCCCCCEEEEECCCcccccc-----------------------------
Confidence 468899999998 68999999998762 89999987541000
Q ss_pred CCcccccccceeEeecCcce-eecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 250 GGVHDEKSVARHTVNLLTST-IKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 250 ~~v~~~~~~~~~~i~l~~~~-v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
...+...|+|..|. |.... +..++|||.|++++|+|+|+|+|++|+++||.+|+.++...
T Consensus 54 ------~~~p~g~I~L~~~~~V~~~~-~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 54 ------SSAPKRSIPLESCFNINKRA-DSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp ------CSCCSEEEEGGGEEEEEEEC-CSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred ------ccCcceEEEeeceEEEEecc-CCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 00123345555543 33322 24678999999999999999999999999999999988654
No 70
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.60 E-value=8e-15 Score=127.45 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=76.3
Q ss_pred eEEEEEe-----ecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 179 IKQGYLS-----KRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 179 ~keGyL~-----Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
.++|||. |.|++ ..++|+||||+|.++. ||||+...-. + ...
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~-L~yf~~~~~~--~-----------------------------~~~ 49 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGAT-LLYYGAKSLR--G-----------------------------TDR 49 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTE-EEEEEBSSSC--C-----------------------------SSG
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCE-EEEEcccccc--c-----------------------------ccc
Confidence 3577776 44665 3689999999998766 8888865321 0 000
Q ss_pred ccccccceeEeecCcceeecCCCCCCCcceEEEEeC--CeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISP--TKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~--~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.+..+...|+|..+.|.. .+...+++||+|.++ +..|.|||+|+.++..||.||..||.
T Consensus 50 ~~~~~~P~~~i~L~g~~V~~-~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~ 112 (126)
T 2dtc_A 50 KHYKSTPGKKVSIVGWMVQL-PDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112 (126)
T ss_dssp GGBCSSCSEEEECTTCEEEC-CCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cccccCCCceEEeCCCEEEe-cCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11122455678899999984 566678999999987 47999999999999999999999875
No 71
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.60 E-value=3.6e-15 Score=152.28 Aligned_cols=95 Identities=25% Similarity=0.536 Sum_probs=76.2
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++++|||.|+++. .+.|+||||||+ ++.|+||+++.+.
T Consensus 212 ~~~k~G~L~K~g~~-~k~WkkRwFVL~-~~~L~Yyk~~~~~--------------------------------------- 250 (347)
T 2r09_A 212 NPDREGWLLKLGGR-VKTWKRRWFILT-DNCLYYFEYTTDK--------------------------------------- 250 (347)
T ss_dssp CCCEEEEEEEECSS-SCCEEEEEEEEE-TTEEEEESSTTCS---------------------------------------
T ss_pred ccccCCeeEecCCC-cccceeEEEEEc-CCEEEEEcCCCcc---------------------------------------
Confidence 36899999999765 489999999997 5669999987652
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeC----------------------CeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP----------------------TKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~----------------------~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.+.|+|..+.|... +...++|||+|.++ .|+|+|+|+|++|+++||.+|+.+|.
T Consensus 251 -~p~G~I~L~~~~v~~~-~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~ 328 (347)
T 2r09_A 251 -EPRGIIPLENLSIREV-EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 328 (347)
T ss_dssp -SCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEEcCCeEEEEc-cCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 1234566666776653 33578999999987 37999999999999999999999885
No 72
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.55 E-value=1.7e-14 Score=142.96 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 174 GKVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 174 ~~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
....|.++|||+|++... ++|++|||||.+++ ||||+++.+..+.+.
T Consensus 164 ~~~~p~~~G~L~k~~~~~-k~WkkR~fvL~~~~-L~yyk~~~~~~~~~~------------------------------- 210 (291)
T 3tca_A 164 SIIVPELEGALYLKEDGK-KSWKRRYFLLRASG-IYYVPKGKTKTSRDL------------------------------- 210 (291)
T ss_dssp SCCCCCCEEEEEEECTTS-SCEEEEEEEECSSE-EEECCTTCCSSTTTC-------------------------------
T ss_pred CCCCCceEEEEEEeCCCC-CCceEEEEEEeCCE-EEEEecCccccccCc-------------------------------
Confidence 345578999999997664 88999999998655 888887766422110
Q ss_pred cccccceeEeecCcceeecC-----CCCCCCcceEEEEeCC------eEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 254 DEKSVARHTVNLLTSTIKPD-----ADQSDLRFCFRIISPT------KVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~-----~~~~~r~fcF~I~t~~------rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
. ..+++..+.+... .....++|||.|++++ ++|+|+|+|++|+..||.||+.|.
T Consensus 211 ----i--~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 211 ----A--CFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp ----E--EEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ----e--eeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 0 0011112222111 0123568999999865 579999999999999999999876
No 73
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.45 E-value=4.3e-13 Score=119.02 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=77.3
Q ss_pred eEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCC------CCcCCCccccccCCCCCccccccccccccccC-CC
Q 011187 179 IKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSW------NSAAGSQSSIQRSNPSETSQGLLSRWLSSHYH-GG 251 (491)
Q Consensus 179 ~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~------~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~-~~ 251 (491)
+|+|||+|+++ ..+.|++|||||.++. |||++..... ........ . .+.=.+ +-++.-.... +.
T Consensus 2 ~k~G~L~~~~~-~~~~w~~~~fvL~~~~-L~y~~e~s~~~~~~~~e~~~~~~~-~-----~~~~~~-~n~~fh~~~~~~~ 72 (150)
T 2fjl_A 2 IKNGILYLEDP-VNHEWYPHYFVLTSSK-IYYSEETSSDQGNEDEEEPKEASG-S-----TELHSS-LEVLFQGPNPAIL 72 (150)
T ss_dssp CEEEEEEEEET-TTTEEEEEEEEEETTE-EEECCCCSCSSCCSCCCCSCCCCC-S-----CCCCCC-SSSGGGSSCSTTS
T ss_pred CcceEEEeecC-CCCCceEeEEEEECCE-EEEEeeccccccccCcccccccCC-c-----hhhccc-chhccccCCcccc
Confidence 58999999965 5589999999998655 8887732210 00000000 0 000000 0000000000 00
Q ss_pred cc------cc---cccceeEeecCcceeecCCC-CCCCcceEEEEeCC---eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 252 VH------DE---KSVARHTVNLLTSTIKPDAD-QSDLRFCFRIISPT---KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 252 v~------~~---~~~~~~~i~l~~~~v~~~~~-~~~r~fcF~I~t~~---rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.. +. -....+.|+|.+|.|...++ ..+++|+|+|.+++ ++|.|.|+|.+||.+||.+|+.|+.
T Consensus 73 e~~~~~l~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 73 EPEREHLDENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp CTTCSSSCTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred chhHhcccccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 00 00 01225788899999976543 35689999999985 5999999999999999999999874
No 74
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=116.20 Aligned_cols=97 Identities=15% Similarity=0.292 Sum_probs=75.1
Q ss_pred ceeEEEEEeecCCC--cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 177 QTIKQGYLSKRSSN--LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 177 ~~~keGyL~Krs~~--~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
.|..++||.+++.+ ..++|+||||+|.+ ..|+||+++.+..
T Consensus 8 ~pel~~~l~~~~pkk~tlK~~KrrWFvlk~-~~L~YyK~kee~~------------------------------------ 50 (137)
T 2ys3_A 8 IPELKDHLRIFRPRKLTLKGYRQHWVVFKE-TTLSYYKSQDEAP------------------------------------ 50 (137)
T ss_dssp CCCEECCCEECCTTSCCSSSSCCCEEEECS-SCEEEESSTTTTT------------------------------------
T ss_pred CcchhHHHHhhCccccccccceeEEEEEeC-CEEEEECCchhcc------------------------------------
Confidence 46789999877554 45799999999975 4699998877631
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCC----eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT----KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~----rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+.+.|+|..|.|.++......+|+|.+..|. ++|+|.|+|++++.+||+|++-|
T Consensus 51 --~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA 110 (137)
T 2ys3_A 51 --GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA 110 (137)
T ss_dssp --SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred --CCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence 023345678889988764334678999888774 89999999999999999999855
No 75
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-12 Score=109.28 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=70.0
Q ss_pred cceeEEEEEeecCC-CcccCceEEEEEEecC---c--eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccC
Q 011187 176 VQTIKQGYLSKRSS-NLRADWKRRFFVLDSR---G--LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYH 249 (491)
Q Consensus 176 ~~~~keGyL~Krs~-~~~k~WkrRwFvL~~~---g--~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~ 249 (491)
..++|+|||+++.. ++++.|+||||+|..+ | .|-||..+++...+
T Consensus 10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~----------------------------- 60 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRC----------------------------- 60 (127)
T ss_dssp CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSC-----------------------------
T ss_pred CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccC-----------------------------
Confidence 35789999999875 5667799999999742 2 47788877652110
Q ss_pred CCcccccccceeEeecCcce-eecCCCC---CCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 250 GGVHDEKSVARHTVNLLTST-IKPDADQ---SDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 250 ~~v~~~~~~~~~~i~l~~~~-v~~~~~~---~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
..+...|.|..|. |.+...+ ....++|.|.|++|+|+|.|+++ |+.+||.+|....
T Consensus 61 -------~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 61 -------EAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLLA 120 (127)
T ss_dssp -------SCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHHH
T ss_pred -------CCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHHh
Confidence 1123445555443 2222222 13468999999999999999975 8999999998653
No 76
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.40 E-value=4.3e-13 Score=131.85 Aligned_cols=107 Identities=21% Similarity=0.381 Sum_probs=75.9
Q ss_pred cceeEEEEEeec-----CC--C----cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccc
Q 011187 176 VQTIKQGYLSKR-----SS--N----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWL 244 (491)
Q Consensus 176 ~~~~keGyL~Kr-----s~--~----~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 244 (491)
..+.|+|||.++ ++ + ..+.|++|||||.+ +.|+||+++.....
T Consensus 9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg-~~L~fYKde~~~~~------------------------- 62 (279)
T 3a8n_A 9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKG-CTLFFYETDGRSGI------------------------- 62 (279)
T ss_dssp -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEET-TEECCBCCC------------------------------
T ss_pred CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeC-CEEEEEeccccccc-------------------------
Confidence 346799999743 11 1 35789999999975 55899988754210
Q ss_pred ccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 245 SSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 245 ~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
+....+...|.+..+.+...++...++|+|.|.+++ ++|+|||+|++||+.||.+|+.++....
T Consensus 63 ---------~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~~ 127 (279)
T 3a8n_A 63 ---------DHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAV 127 (279)
T ss_dssp ------------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhhc
Confidence 000122334567777877666667889999999876 7999999999999999999999987543
No 77
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.37 E-value=1.4e-12 Score=112.23 Aligned_cols=96 Identities=20% Similarity=0.412 Sum_probs=62.2
Q ss_pred EEEEEee--cCCCccc-CceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 180 KQGYLSK--RSSNLRA-DWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 180 keGyL~K--rs~~~~k-~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.+|||.+ +++ .++ .|+||||||.+. .|+||+.+.+...
T Consensus 3 ~eGwl~~pk~~~-~~k~~Wkkr~~vL~~~-kL~~y~~~~~~~~------------------------------------- 43 (117)
T 2rov_A 3 LEGWLSLPVRNN-TKKFGWVKKYVIVSSK-KILFYDSEQDKEQ------------------------------------- 43 (117)
T ss_dssp SEEEEECCCCSS-SSCCCCCEEEEEEETT-EEEEESCHHHHHT-------------------------------------
T ss_pred eEEEEEeecCCC-ccCCCcEEEEEEEECC-EEEEEECCCCccc-------------------------------------
Confidence 4899996 533 456 899999999755 4778877543100
Q ss_pred ccceeEeecCc--c--eee----cCCCCCCCcceEEEEeC------CeEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLT--S--TIK----PDADQSDLRFCFRIISP------TKVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~--~--~v~----~~~~~~~r~fcF~I~t~------~rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..+...|++.. + .|. +.....+.++.|+|.++ .++++|.|+|++|+++||.+|+.+|.
T Consensus 44 ~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 44 SNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp TCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 00011122211 0 010 11223445789999864 48999999999999999999998764
No 78
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.29 E-value=3.4e-12 Score=133.86 Aligned_cols=102 Identities=19% Similarity=0.348 Sum_probs=69.4
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
.++|+|||.|+|... +.|+||||+|++++.|+||+++.+..+.+.
T Consensus 5 ~v~keG~L~K~g~~~-k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~---------------------------------- 49 (446)
T 4ejn_A 5 AIVKEGWLHKRGEYI-KTWRPRYFLLKNDGTFIGYKERPQDVDQRE---------------------------------- 49 (446)
T ss_dssp CEEEEEEEEEEETTT-TEEEEEEEEEETTSBEEEESSCC-----------------------------------------
T ss_pred eEEEEeeEEeecccc-ccccceEEEEeeCCEEEEEecCCCCCccCc----------------------------------
Confidence 589999999997665 799999999987788999998866321100
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEE---EEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVY---TLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~---~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.....+.+..|.+... +..+++||.|.+++ +++ .|++++++++++|+.||+.+|..+
T Consensus 50 -i~l~~~~~~~~~~~~~--~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~ 110 (446)
T 4ejn_A 50 -APLNNFSVAQCQLMKT--ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 110 (446)
T ss_dssp -CCCGGGBCTTCEEEEE--CSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC-
T ss_pred -ccccCccccceeecCC--CCCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhhh
Confidence 0000111222333221 23568999999876 333 799999999999999999987543
No 79
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=117.14 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=67.8
Q ss_pred CcceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 175 KVQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 175 ~~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
...+..+|||++++.+ ++.|+||||+|+++| |||+++.....++..
T Consensus 129 s~~P~~~G~L~~ke~~-~K~WkkRyfvLr~sg-Ly~~~k~~sk~~r~l-------------------------------- 174 (256)
T 3hk0_A 129 SSSPEIQGFLHVKELG-KKSWKKLYVCLRRSG-LYCSTKGTSAAPRHL-------------------------------- 174 (256)
T ss_dssp TSCEEEEEEEEEECTT-SSCEEEEEEEEETTE-EEEESSTTCCCGGGE--------------------------------
T ss_pred CCCCcceeEEEEecCC-CCcceEEEEEEeCCE-EEEEecCCCCccccc--------------------------------
Confidence 4567899999998655 489999999999888 677765543221110
Q ss_pred ccccceeEeecCcceeecCCC-----CCCCcceEEEEeCCe------EEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDAD-----QSDLRFCFRIISPTK------VYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~-----~~~r~fcF~I~t~~r------t~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..-+.+....|-...+ ....+|||.|..+.. .++|+|++++++..||.||+.|..
T Consensus 175 -----~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 175 -----QLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp -----EEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -----eEEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 0001122222211100 123479999997653 699999999999999999998874
No 80
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=99.22 E-value=4.2e-11 Score=117.78 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=63.6
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..+.++|||++++.+. +.|+||||+|+++| |||+.+.....+.. +
T Consensus 156 ~~pe~~G~L~~k~~~~-k~WkkRyfvLr~sg-Lyy~~K~~sk~~r~-----------------l---------------- 200 (281)
T 4gmv_A 156 TVPEIEGVLWLKDDGK-KSWKKRYFLLRASG-IYYVPKGKAKVSRD-----------------L---------------- 200 (281)
T ss_dssp CCCCCEEEEEEECTTS-SCEEEEEEEECSSC-EEEC---------C-----------------C----------------
T ss_pred CCCccEEEEEEECCCC-CCCeEEEEEEeCCE-EEEEeCCCCCcccc-----------------c----------------
Confidence 4567899999996544 78999999999888 56666543321110 0
Q ss_pred cccceeEeecCcceeecCC-----CCCCCcceEEEEeCC------eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDA-----DQSDLRFCFRIISPT------KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~-----~~~~r~fcF~I~t~~------rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..-+.+..+.|-... -....+|||.|.++. .+++|+|++++++..||.||+-|+.
T Consensus 201 ----~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 201 ----VCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp ----EEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ----eEEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 000112222221100 112458999999754 4799999999999999999998874
No 81
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=99.11 E-value=6.9e-10 Score=98.33 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++++|||.|+.+ -.|++|||+|++...|||.......
T Consensus 50 e~Ilk~G~v~KrkG---l~~kkR~liLT~~PrL~Yvdp~~~~-------------------------------------- 88 (151)
T 1w1g_A 50 NLILKMGPVDKRKG---LFARRRQLLLTEGPHLYYVDPVNKV-------------------------------------- 88 (151)
T ss_dssp CCEEEEEEEEEEET---TEEEEEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred CcEEEEEEEEeccc---CcceeEEEEEcCCceEEEEcCcccc--------------------------------------
Confidence 46899999999744 2499999999977766665544321
Q ss_pred cccceeEeecC-cceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 256 KSVARHTVNLL-TSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 256 ~~~~~~~i~l~-~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
..+.|.+. .+.|.... ..+|.|.||+|+|+|.+. ..++++|++||+.++...+..
T Consensus 89 ---~KGeIpls~~l~ve~k~-----~~~F~I~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~~~~~~ 144 (151)
T 1w1g_A 89 ---LKGEIPWSQELRPEAKN-----FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVWRQRYQS 144 (151)
T ss_dssp ---EEEEECCCTTCEEEESS-----SSEEEEEETTEEEEEECT-TSCHHHHHHHHHHHHHHHHCC
T ss_pred ---ccceEecCCCeeEEEcC-----CCEEEEECCCceEEEEcC-ccCHHHHHHHHHHHHHHHhcc
Confidence 11223332 23444432 238999999999999997 889999999999999877654
No 82
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=99.04 E-value=9.3e-10 Score=98.17 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=74.4
Q ss_pred ceeEEEEEeecCC--CcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 177 QTIKQGYLSKRSS--NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 177 ~~~keGyL~Krs~--~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
.|...+||..... -..|.||+|||+++ ++.|+||+++++..
T Consensus 46 iPeL~dyLk~~~pk~~tLKgyKryWFv~k-d~~LsyYKskEe~~------------------------------------ 88 (173)
T 4f7h_A 46 IPELADYIKVFKPKKLTLKGYKQYWCTFK-DTSISCYKSKEESS------------------------------------ 88 (173)
T ss_dssp TTCEEEEEEEECCBTTBCCCCEEEEEEEE-TTEEEEESCGGGCS------------------------------------
T ss_pred ChhhHhHHHhhcchhcccccceeEEEEEe-CCEEEEEcCHhHhc------------------------------------
Confidence 4567899964322 24689999999996 66799999987731
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeC---C-eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISP---T-KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~---~-rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+...|+|.+|.|.++......+|++.+..| + ..++|.|+|+.++..||.|.+-|
T Consensus 89 --geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLA 148 (173)
T 4f7h_A 89 --GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA 148 (173)
T ss_dssp --SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred --CCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhh
Confidence 12346788999999876444456788887765 2 68999999999999999999754
No 83
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=99.03 E-value=9.7e-10 Score=97.02 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=72.0
Q ss_pred ceeEEEEEeecCC--CcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 177 QTIKQGYLSKRSS--NLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 177 ~~~keGyL~Krs~--~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
.|...|||..... -..|.||+|||+++ ++.|+||+++++..
T Consensus 25 iPeL~dyLk~~~pkrltLKgfKryWfv~k-Dt~LsyYKSkEe~~------------------------------------ 67 (165)
T 4bbk_A 25 IPKLADYLKLFRPKKLMLKACKQYWFVFK-DTSIAYFKNKELEQ------------------------------------ 67 (165)
T ss_dssp -CCEEEEEEEEC-------CCEEEEEEEE-TTEEEEESSGGGTT------------------------------------
T ss_pred ChhhHhHHHhhcccccccccceeEEEEEe-CCEEEEEcCHHHhc------------------------------------
Confidence 4567899975332 24589999999996 67799999987731
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCC----eEEEEEeCCHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT----KVYTLQAENTLDQMDWIEKINGV 312 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~----rt~~lqAeSe~e~~~WI~ai~~a 312 (491)
..+...|+|.+|.|.++..-...+|+|.|..|. ..++|.|+||.+...||.|++-|
T Consensus 68 --geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLA 127 (165)
T 4bbk_A 68 --GEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILA 127 (165)
T ss_dssp --SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred --CCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhc
Confidence 124467889999998754444568999987652 58999999999999999999855
No 84
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=5.3e-09 Score=109.42 Aligned_cols=100 Identities=15% Similarity=0.243 Sum_probs=64.3
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+.++ +.++.|||+|.++-+++........
T Consensus 243 ~li~~g~l~~~~~---~~~~~r~~fLF~d~Ll~~k~~~~~~--------------------------------------- 280 (434)
T 3mpx_A 243 EFLKEGTLMKVTG---KNRRPRHLFLMNDVLLYTYPQKDGK--------------------------------------- 280 (434)
T ss_dssp CEEECCEEEEEET---TEEEEEEEEEESSEEEEEEECTTSC---------------------------------------
T ss_pred ceEecceEEEEeC---CCceEEEEEEECCEEEEEEecCCCe---------------------------------------
Confidence 4689999987643 3588999999988755543332110
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
-.....+.+....|... ++.+.+|+|.|.++.++|+|+|.|++|++.||++|+.+|......
T Consensus 281 y~~k~~i~L~~l~v~~~-~~~~~~~~f~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~ 342 (434)
T 3mpx_A 281 YRLKNTLAVANMKVSRP-VMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKA 342 (434)
T ss_dssp EEEEEEEEC-----CCC-CCTTSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHC-------
T ss_pred EEEEEEEEcCCcEEEec-CCCCCCeeEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhh
Confidence 01233455555555432 333568999999999999999999999999999999999765443
No 85
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.4e-08 Score=84.54 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=64.7
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCC-CCcCCCccccccCCCCCccccccccccccccCCCccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSW-NSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHD 254 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~-~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~ 254 (491)
+.++|+|||-+.+... +.|||+|++|+... +.+|.++... +-.-+.
T Consensus 6 s~vlkeGWmVH~t~~d-~~rKRHYWrLD~K~-Itlf~~e~~~k~ykeIp------------------------------- 52 (129)
T 2d9z_A 6 SGMVKEGWMVHYTSRD-NLRKRHYWRLDSKC-LTLFQNESGSKYYKEIP------------------------------- 52 (129)
T ss_dssp TTSEEEEEEEEEESSC-CCCEEEEEEEESSC-EEEESCSSCCSCCCEEC-------------------------------
T ss_pred CceeecceEEEEccCC-ccccceeeEecCCe-EEEEecCCCCceeceee-------------------------------
Confidence 4689999999886554 68999999998766 6677665431 100000
Q ss_pred ccccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCC---------------HHHHHHHHHHHHHHHH
Q 011187 255 EKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAEN---------------TLDQMDWIEKINGVIA 314 (491)
Q Consensus 255 ~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeS---------------e~e~~~WI~ai~~ai~ 314 (491)
. .+.+.+..+...........++||+|.|.+.+|+.+++. .+.++.|..||++|+.
T Consensus 53 ---L-seIL~v~~~~~~~~~~~~~~phcFEi~T~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 53 ---L-SEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp ---T-TTCCEECCTTCCCCSSSCSCCCSEEEECSSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred ---H-HHhcccccccCccccCCCCCCceEEEEECCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 0 000111111100000112346999999999999999853 6899999999998874
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.81 E-value=7.6e-09 Score=88.30 Aligned_cols=96 Identities=16% Similarity=0.312 Sum_probs=63.5
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..++|+||+-+.+.. .+.|||+|++|+... +.||+++....+
T Consensus 6 s~vlkeGW~VH~t~~-d~~rKRHYWrLD~K~-Itlf~~e~~~~~------------------------------------ 47 (125)
T 2coa_A 6 SGTLREGWVVHYSNK-DTLRKRHYWRLDCKC-ITLFQNNTTNRY------------------------------------ 47 (125)
T ss_dssp CSCSEEEEEEECCSS-SCCCEEEEEEECSSE-EEEESSSSCSSC------------------------------------
T ss_pred CceeecceEEEEccC-CccccceeeEecCCe-EEEEecCCCCce------------------------------------
Confidence 457999999988654 478999999997655 777777644211
Q ss_pred cccceeEeecC-cceeecCC-----CCCCCcceEEEEeCCeEEEEEeC---C--------HHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLL-TSTIKPDA-----DQSDLRFCFRIISPTKVYTLQAE---N--------TLDQMDWIEKINGVI 313 (491)
Q Consensus 256 ~~~~~~~i~l~-~~~v~~~~-----~~~~r~fcF~I~t~~rt~~lqAe---S--------e~e~~~WI~ai~~ai 313 (491)
...|.|. .-.|.+.. ....+++||+|+|...+|+.+++ . .+.++.|..||++|+
T Consensus 48 ----ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 48 ----YKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL 118 (125)
T ss_dssp ----SEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred ----eeeeehhHeecccccccccccCCCCCCceEEEEeCCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence 0111111 01111110 12235799999999999999984 1 256999999998875
No 87
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.66 E-value=4.5e-06 Score=86.41 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=66.4
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+..... +.++.||++|.++-+|+.... +..
T Consensus 233 rli~~G~l~~~~~~~-~~~~~~~~fLF~d~Ll~~k~k-~~~--------------------------------------- 271 (406)
T 2vrw_B 233 RPKIDGELKITSVER-RSKTDRYAFLLDKALLICKRR-GDS--------------------------------------- 271 (406)
T ss_dssp SEEEEEEEEEECSSC-CSCEEEEEEEESSEEEEEEEE-TTE---------------------------------------
T ss_pred cccccccEEEEecCC-CccceEEEEecCCEEEEEEec-CCc---------------------------------------
Confidence 368999998764332 568999999998876554332 110
Q ss_pred ccceeEeecCcceeecCCCCC----CCcceEEEEeC--CeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 257 SVARHTVNLLTSTIKPDADQS----DLRFCFRIISP--TKVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~----~r~fcF~I~t~--~rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
-.....+++....|...++.. ..++.|.|++. .+.|.|+|.|+++++.||++|+.+|..+.
T Consensus 272 y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~ 338 (406)
T 2vrw_B 272 YDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 338 (406)
T ss_dssp EEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence 011234445444444332211 23689999974 57999999999999999999999998663
No 88
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=98.56 E-value=1.1e-06 Score=74.90 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=70.7
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+-.....+.=+++||+|-+|.+|+-.+..... |.
T Consensus 7 ~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~--------------------~~----------------- 49 (113)
T 1zc3_B 7 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRR--------------------GM----------------- 49 (113)
T ss_dssp CEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTT--------------------SC-----------------
T ss_pred EEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCc--------------------cc-----------------
Confidence 36889999887543323335678999999877765543321 00
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
-.....+++....|.-.++...-+++|.|.++.++++|+|+|..|..+||.+|+.||..++.
T Consensus 50 ~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~~ 111 (113)
T 1zc3_B 50 YRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 111 (113)
T ss_dssp EEEEEEEETTTCEEEEECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcccCEEEECCCCcccceEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence 01112234443333222344456899999999999999999999999999999999977653
No 89
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.39 E-value=2.5e-05 Score=84.80 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=67.2
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccccc
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEKS 257 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~~ 257 (491)
.+++|.|.+.... ++.++.||++|.++-+|+..+. +.. -
T Consensus 406 ll~~G~l~~~~~~-~~~~~~r~~fLF~d~Ll~~k~~-~~~---------------------------------------y 444 (587)
T 3ky9_A 406 PKIDGELKITSVE-RRSKMDRYAFLLDKALLICKRR-GDS---------------------------------------Y 444 (587)
T ss_dssp EEEEEEEEEECSS-CCSCEEEEEEEETTEEEEEEEE-TTE---------------------------------------E
T ss_pred eEEEeeEEEEecc-CCCcceEEEEEECCEEEEEEec-CCE---------------------------------------E
Confidence 6899999876443 3678999999998876655333 210 0
Q ss_pred cceeEeecCcceeecCCCC----CCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 258 VARHTVNLLTSTIKPDADQ----SDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 258 ~~~~~i~l~~~~v~~~~~~----~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
.....+.+....|...++. ..-+++|.|++.. ++|.|+|.|++|++.||++|+.+|....
T Consensus 445 ~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~ 510 (587)
T 3ky9_A 445 DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY 510 (587)
T ss_dssp EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 1233455555555443221 2246899999976 7999999999999999999999997653
No 90
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=98.12 E-value=0.00011 Score=75.97 Aligned_cols=105 Identities=10% Similarity=0.133 Sum_probs=69.5
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+..... +.++.|||+|.++-+|+..+..... +.
T Consensus 256 ~Li~~G~l~~~~~~~-~k~~~r~~fLF~d~Ll~~k~~~~~~--------------------~~----------------- 297 (402)
T 2dfk_A 256 ELIYTGEMAWIYQPY-GRNQQRVFFLFDHQMVLCKKDLIRR--------------------DI----------------- 297 (402)
T ss_dssp CEEEEEEEEEESSTT-CCCEEEEEEEETTEEEEEEECSSCT--------------------TC-----------------
T ss_pred ceEEeceEEEEeccC-CceEEEEEEeeCCEEEEEEeccccC--------------------Cc-----------------
Confidence 578999998775422 3578999999988766654322110 00
Q ss_pred ccceeEeecCcceeecCCCCC------CCcceEEEEeC--CeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 257 SVARHTVNLLTSTIKPDADQS------DLRFCFRIISP--TKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~------~r~fcF~I~t~--~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
-.....+++....|....+.. .-+++|.|..+ ..+|+|+|.|+++++.||++|+.++..+...
T Consensus 298 ~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~ 368 (402)
T 2dfk_A 298 LYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQED 368 (402)
T ss_dssp EEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeeeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 012234445444444322221 12579999986 4699999999999999999999999877544
No 91
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=98.11 E-value=0.00013 Score=76.80 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=70.0
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+..... +.++.|||+|.++-+|+..+..... +.
T Consensus 333 ~li~~G~l~~~~~~~-~~~~~r~~fLF~d~Ll~~k~~~~~~--------------------~~----------------- 374 (466)
T 2pz1_A 333 ELIYSGELTRVTQPQ-AKSQQRMFFLFDHQLIYCKKDLLRR--------------------DV----------------- 374 (466)
T ss_dssp CEEEEEEEEEECTTT-CCEEEEEEEEETTEEEEEEECSSCT--------------------TC-----------------
T ss_pred eeEEeeeEEEEecCC-CCeeEEEEEEECCEEEEEEeccccC--------------------Cc-----------------
Confidence 578999998775422 3578999999988766544322110 00
Q ss_pred ccceeEeecCcceeecCCCCC------CCcceEEEEeC--CeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 257 SVARHTVNLLTSTIKPDADQS------DLRFCFRIISP--TKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~------~r~fcF~I~t~--~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
-.....+.+....|....+.. .-+++|.|... ..+|+|+|.|+++++.||++|+.++..+-.+
T Consensus 375 ~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~ 445 (466)
T 2pz1_A 375 LYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD 445 (466)
T ss_dssp EEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEeeeeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 012234555555554322221 23589999986 4699999999999999999999999876544
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.09 E-value=1.1e-05 Score=70.22 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=45.3
Q ss_pred eeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 260 RHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
.+.+++....|....+..+.++||+|..+. +++.+.|.|.+|++.||.+|+.+|..
T Consensus 71 kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 71 QGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp EEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred EEEEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 456667666666543445679999999987 89999999999999999999998853
No 93
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=98.01 E-value=5.2e-05 Score=66.36 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=68.0
Q ss_pred ceeEEEEEeec---CCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcc
Q 011187 177 QTIKQGYLSKR---SSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVH 253 (491)
Q Consensus 177 ~~~keGyL~Kr---s~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~ 253 (491)
..+..+-|+-= .+..+++-+.|+|+|.+|-+||-+--+.... +..+
T Consensus 12 rlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~------~~~Y------------------------- 60 (140)
T 3qwm_A 12 RLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKN------SVTY------------------------- 60 (140)
T ss_dssp CEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---C------CCCC-------------------------
T ss_pred eEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCC------CCce-------------------------
Confidence 45677777421 1223456789999999888666531221100 0000
Q ss_pred cccccceeEeecCcceeecCCCCCCCcceEEEEeCC------eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 254 DEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT------KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 254 ~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~------rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
.....+++.+..|... +...-+|+|.|.++. ++++|+|.|+.|+..||++|+.+|+..-
T Consensus 61 ----~vr~~~~L~gm~V~~~-e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 61 ----SFRQSFSLYGMQVLLF-ENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp ----CCEEEECCTTEEEEEE-CCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----EEEEEeeecceEEEcc-cCCCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 1223455666666543 333569999999853 6899999999999999999999997654
No 94
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=98.01 E-value=0.0003 Score=71.51 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=65.1
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.++.. ++.++.|||+|.++-+++..+......- .....+..| ..+..
T Consensus 252 ~li~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~-------------~~~~~~~~~----------~~~~~ 306 (368)
T 1xcg_A 252 KMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLL-------------KCHSKTAVG----------SSDSK 306 (368)
T ss_dssp CEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSCEEC-------------CC----------------------
T ss_pred eEEeecceEeeec--CCCeeEEEEEcccccHHHhhccccccee-------------eeccccccC----------CCCcc
Confidence 5789999986533 2468999999998876665443221000 000000000 00000
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeC-----CeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISP-----TKVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-----~rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
-.....+.+....|...+ +.+.+|.|++. ..+|.|+|.|+++++.||++|+.||..
T Consensus 307 ~~~~~~i~l~~~~v~~~~---~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 307 QTFSPVLKLNAVLIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp -CCCSEEEGGGEEEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCcCCceEccceeeeccc---CCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 011234445444454322 22567888864 379999999999999999999999975
No 95
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.96 E-value=7.2e-05 Score=64.17 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=67.1
Q ss_pred CcceeEEEEEeec-C------CCcccCceEEEEEEecC-----ceEEEEecCCCCCCcCCCccccccCCCCCcccccccc
Q 011187 175 KVQTIKQGYLSKR-S------SNLRADWKRRFFVLDSR-----GLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSR 242 (491)
Q Consensus 175 ~~~~~keGyL~Kr-s------~~~~k~WkrRwFvL~~~-----g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 242 (491)
.....+||.|.-. + ......|+|+|++|... -+|-||..++...|.. +++
T Consensus 15 ~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~----------------~i~-- 76 (136)
T 1v5m_A 15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKV----------------SIP-- 76 (136)
T ss_dssp SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSS----------------CEE--
T ss_pred cceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCcc----------------ccc--
Confidence 3467899988432 2 12346899999999753 3577776665432211 110
Q ss_pred ccccccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeCCe-EEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 243 WLSSHYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTK-VYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 243 ~~~s~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~r-t~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
++ ....+..++.. +-.|+.+.|.|.+.++ .|+|.|.++.+++.|+..|+.++..
T Consensus 77 --cs--------------~I~EVR~tt~L---EmPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 77 --LS--------------AIIEVRTTMPL---EMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp --TT--------------TCCBCCCCCCS---SSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --hh--------------hhhhhhhcccc---ccCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 00 00112223322 1235689999999886 8999999999999999999988754
No 96
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=97.95 E-value=0.00034 Score=72.40 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=66.9
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
...+++|.|.+..++ +.|+.||++|.++-+|+..+......-.... ... ..+ .+.
T Consensus 293 r~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~----------~~~-------~~~------~~~ 347 (418)
T 3t06_A 293 RKMIHEGPLTWRISK--DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHS----------KTA-------VGS------SDS 347 (418)
T ss_dssp SCEEEEEEEEECCBT--TBCCEEEEEEESSEEEEEEECSSCEECCC----------------------------------
T ss_pred ceeEEeceEEEEeCC--CCeEEEEEEecCCEEEEEEEcCCceEEeecc----------ccc-------ccC------CCc
Confidence 357899999877533 4588999999988866655433221000000 000 000 000
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeC-----CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISP-----TKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-----~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.-.....+.+....|+..+ +-...|.|++. .++|+|+|.|.+|++.||++|+.+|+.+
T Consensus 348 ~~~~k~~i~l~~~~v~~~~---~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~ 410 (418)
T 3t06_A 348 KQTFSPVLKLNAVLIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410 (418)
T ss_dssp --CCCSEEEGGGEEEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCceechhceecccc---ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 1111234455555555322 22457888764 2799999999999999999999998744
No 97
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=97.87 E-value=0.00022 Score=76.50 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=64.7
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
...+++|.|.++..+ +.|+.|||+|.++-+|+..+......- ...+..+ ....+.
T Consensus 410 R~LI~eG~l~~~~~~--~k~~~r~~fLF~D~LL~~k~k~~ky~~-------------k~~~~~~----------~~~~d~ 464 (536)
T 3odw_A 410 KKLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERLLL-------------KSHSRTL----------TPTPDG 464 (536)
T ss_dssp SCEEEEEEEEEESCC-----CEEEEEEESSEEEEEEEETTEEEC-------------CCC--------------------
T ss_pred ceeeeecceEEEecC--CCeeEEEEEEcCCEEEEEEEcCCeEEE-------------eeccccc----------cccccc
Confidence 358999999876533 368999999998886665544321100 0000000 000011
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeC----CeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISP----TKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~----~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
.......+.+....|+..+ .+ ..+|.|+.. ..+|.|+|.|.+|++.||++|+.||..+..
T Consensus 465 k~~~~~~i~L~~l~v~e~~--~d-~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~ 528 (536)
T 3odw_A 465 KTMLRPVLRLTSAMTREVA--TD-HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKV 528 (536)
T ss_dssp --CCCSEEEGGGEEEEECT--TC-TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCC
T ss_pred ccccCceeecccceeeccc--cc-CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 1111223555555565432 22 334555443 379999999999999999999999976643
No 98
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=97.82 E-value=8.3e-05 Score=71.50 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=74.9
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
.|+|++.--+||.++.|+.+ ....+|..++..|..+.-+++..|..|... +++.++.|..|+.+|..|
T Consensus 142 rKkle~~rLd~D~ak~k~~k-----------~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~-~~e~l~~l~~~v~aQl~y 209 (240)
T 2z0v_A 142 LKKLEGRRLDYDYKKKRVGK-----------IPDEEVRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLAVFIEAALDY 209 (240)
T ss_dssp HHHHHHHHHHHHHHHTTTTS-----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence 47889999999999888743 237788889999999999999999999866 599999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVL 105 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~ 105 (491)
|++|++.++++.|++....
T Consensus 210 ~~~~~e~L~~l~~~l~~~~ 228 (240)
T 2z0v_A 210 HRQSTEILQELQSKLQMRI 228 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988876543
No 99
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=97.80 E-value=0.0015 Score=66.50 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=64.6
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|..+..+ +.|+.|||+|.++-+++..+......- ...+..+ ....+.+
T Consensus 258 ~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~k~~k~~~-------------k~~~~~~----------~~~~~~k 312 (377)
T 3p6a_A 258 KLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERLLL-------------KSHSRTL----------TPTPDGK 312 (377)
T ss_dssp CEEEEEEEEEESSS--SCEEEEEEEEESSEEEEEEEETTEEEC-------------CCCCCC------------------
T ss_pred eEEEECCcEEEecC--CCeEEEEEEeeCCEEEEEEEcCceeEE-------------eeccccc----------ccCcccc
Confidence 47999999765433 368999999998886665544321100 0000000 0000111
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEe---CCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIIS---PTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t---~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
......+.+....++..+ .+.+..|.|.+ +...|.|+|.|.+|++.||..|+.||..+
T Consensus 313 ~~~~~~i~l~~~~v~e~~--~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 313 TMLRPVLRLTSAMTREVA--TDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CSCSEEEGGGEEEEECT--TCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCeEechhhhccccc--cccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 111123445555555432 23344455554 23689999999999999999999998753
No 100
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=97.79 E-value=0.00054 Score=69.27 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=68.9
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
..+++|.|.+.+ .++.|+|+|.++-+++..+.... +. .++. . ...
T Consensus 246 ~li~eG~l~~~g-----~~~~~~~fLF~d~Ll~~k~~~~~-~~-----------~~~~--------------~----~~~ 290 (354)
T 1dbh_A 246 EFIMEGTLTRVG-----AKHERHIFLFDGLMICCKSNHGQ-PR-----------LPGA--------------S----NAE 290 (354)
T ss_dssp CEEEEEEEEETT-----CSSCEEEEEESSEEEEEEECTTC-CC-----------CTTS--------------C----CCS
T ss_pred eEEEEeeEEEEe-----cCceEEEEEeCCEEEEEecCCCC-CC-----------CCCC--------------C----Ccc
Confidence 578999999883 47889999997775554433211 00 0000 0 000
Q ss_pred ccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
-.....+.+....|...++...-+++|.|.+++ .+|+|+|.|+++++.||++|+.+..
T Consensus 291 y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 291 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp EEEEEEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeccceEEEeCCcccccCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 122345666666666544444457999999986 8999999999999999999998864
No 101
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.68 E-value=3.7e-05 Score=73.36 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=30.0
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCC
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWS 216 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~ 216 (491)
..+.++|||+|+++.. ++|+||||||+++ .|.||+...+
T Consensus 19 ~~~~~~g~l~~~~~~~-~~w~~rw~vl~~~-~~~~~~~~~~ 57 (228)
T 3tfm_A 19 GSPYFHSFLYMNGGLM-NSWKRRWCVLKDE-TFLWFRSKQE 57 (228)
T ss_dssp --CCEEEEEEECCTTT-CCCEEEEEEEETT-EEEEESSCCC
T ss_pred CCCceEEEEeecCccc-ccceEEEEEEeCC-EEEEeccCCC
Confidence 3567899999996655 8899999999855 5777776654
No 102
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.64 E-value=0.00036 Score=64.31 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=65.3
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
...+++|-|..+... +.|+.+|++|.++-+|+..+..... .+... +.
T Consensus 69 R~Ll~eG~L~~k~~~--~~~~d~~~fLf~D~Ll~~~~~~~ky-------------------------~~~~~------~~ 115 (185)
T 2lg1_A 69 KKLVRDGSVFLKNAA--GRLKEVQAVLLTDILVFLQEKDQKY-------------------------IFASL------DQ 115 (185)
T ss_dssp SCEEEEEEEEEECTT--CCEEEEEEEEESSEEECCEEETTEE-------------------------ECCCC------SS
T ss_pred CceeeeceEEEeccC--CCeeeEEEEeecCEEEEEEecCCEE-------------------------EEEcc------cC
Confidence 458999999855333 3689999999988766654432110 00000 00
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeC---CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISP---TKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~---~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
....+.+....|+..+. +.+-.|-|.+. .+.|.|+|.|..|++.||++|+.||...
T Consensus 116 ---~~pvi~L~~~~vre~a~--d~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 116 ---KSTVISLKKLIVREVAH--EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp ---SCSEEESSSCEEECCSS--CSSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEeecceEEeccCC--CCCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 11234455666665433 33333444332 3799999999999999999999999765
No 103
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=97.63 E-value=0.0012 Score=67.49 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=66.9
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
...+++|.|.++..+ +.++.||++|.++-+|+..+.... .. ..... . .+ .. ..+.
T Consensus 255 R~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~-~~-~~~~~--~---------~~----~~------~~~~ 309 (385)
T 1txd_A 255 RKMIHEGPLVWKVNR--DKTIDLYTLLLEDILVLLQKQDDR-LV-LRCHS--K---------IL----AS------TADS 309 (385)
T ss_dssp SCEEEEEEEEEESSS--SCBCCEEEEEESSEEEEEEEETTE-EE-CCC--------------------------------
T ss_pred ceEEEECcEEEEcCC--CCeEEEEEEecCCeeEEEEecCCe-eE-Eeecc--c---------cc----cc------cCCC
Confidence 357899999865432 457899999998876665443211 00 00000 0 00 00 0000
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeC---CeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISP---TKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~---~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
.-.....+.+....|.... .+.+.+|.|... .++|.|+|.|+++++.||++|+.+|...-..
T Consensus 310 ~~~~~~~i~l~~~~v~~~~--~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~ 374 (385)
T 1txd_A 310 KHTFSPVIKLSTVLVRQVA--TDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ 374 (385)
T ss_dssp --CCCSEEEGGGEEEEECC--C-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCceecccccccccc--cCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence 0011233445555554322 233556766643 3789999999999999999999999877544
No 104
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.43 E-value=0.0008 Score=65.19 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=75.5
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
.+++++..-+||.+..|+-+. ++++|..++..|..+.-+++..|..|... ..++++.|..|+.+|+.|
T Consensus 158 rkkl~~~rLdyD~~k~k~~k~-----------~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L~~~v~aQl~y 225 (256)
T 1zww_A 158 LKKLEGRRLDFGYKKKRQGKI-----------PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEY 225 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence 477888899999998886421 46788999999999999999999998866 489999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~~ 106 (491)
|.++++.++++.|++.+...
T Consensus 226 ~~~~~e~L~~l~~~l~~~~~ 245 (256)
T 1zww_A 226 HKQAVQILQQVTVRLEERIR 245 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888876443
No 105
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.42 E-value=0.00033 Score=65.52 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=61.7
Q ss_pred eeEEEEEeecCCCcccCceEEEEEEec-----Cc-eEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCC
Q 011187 178 TIKQGYLSKRSSNLRADWKRRFFVLDS-----RG-LLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGG 251 (491)
Q Consensus 178 ~~keGyL~Krs~~~~k~WkrRwFvL~~-----~g-~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~ 251 (491)
.+.||+...+. +|.|++||+||+. |. .|..|++..++..+..
T Consensus 9 ~v~eg~vk~r~---~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~----------------------------- 56 (224)
T 3ml4_A 9 ALVEGQVKLRD---GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLR----------------------------- 56 (224)
T ss_dssp CSEEEEEEEC------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCC-----------------------------
T ss_pred eeEEEeeeeec---CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCc-----------------------------
Confidence 46799998774 3679999999984 23 5788887766422110
Q ss_pred cccccccceeEeecCc-ceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHH
Q 011187 252 VHDEKSVARHTVNLLT-STIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 252 v~~~~~~~~~~i~l~~-~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
....+.|.. +.+.....-....+.+.|+..+.+++|.+|+++.+.+|-..|+.
T Consensus 57 -------~KaslsL~~~~GlE~g~~ldk~s~TlAIIc~d~~~vLAFds~e~l~~W~~~l~~ 110 (224)
T 3ml4_A 57 -------ERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRY 110 (224)
T ss_dssp -------CSEEEEECCEEEEEEEEEETTEEEEEEEEESSCEEEEECSSHHHHHHHHHHHHH
T ss_pred -------ccceeehHHhcCccccccccCcccEEEEEecCcEEEEEeCCHHHHHHHHHHHhh
Confidence 011111211 11111111224589999999999999999999999999998875
No 106
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=97.36 E-value=0.031 Score=56.70 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=42.2
Q ss_pred eeEeecCcceeecCCCCC-CCcceEEEE--------eCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 011187 260 RHTVNLLTSTIKPDADQS-DLRFCFRII--------SPTKVYTLQAENTLDQMDWIEKINGVIASLLSF 319 (491)
Q Consensus 260 ~~~i~l~~~~v~~~~~~~-~r~fcF~I~--------t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~ 319 (491)
...+++....|...++.. +....|+|. .+.++|+|+|.|+++++.||.+|+.+|....+.
T Consensus 303 k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~~ 371 (377)
T 1foe_A 303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRR 371 (377)
T ss_dssp EEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhhh
Confidence 345666666665433322 223458887 346799999999999999999999999765443
No 107
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.35 E-value=0.00082 Score=58.30 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 278 DLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 278 ~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
....||.|+..+ +++.|.|+|+++++.||.+|+..+...
T Consensus 83 ~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 83 PEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp CGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred CccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 357899999987 699999999999999999999877543
No 108
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=97.30 E-value=0.031 Score=56.27 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=66.9
Q ss_pred ceeEEEEEeecCCC--c--------ccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCcccccccccccc
Q 011187 177 QTIKQGYLSKRSSN--L--------RADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSS 246 (491)
Q Consensus 177 ~~~keGyL~Krs~~--~--------~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s 246 (491)
..+++|.|.+.... . +..++.|+|+|.++-+++....... +. |.
T Consensus 209 ~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~---~~----------------~~------- 262 (353)
T 1kz7_A 209 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREEN---GE----------------GY------- 262 (353)
T ss_dssp CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCC---CS----------------SC-------
T ss_pred hhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEecccc---cc----------------CC-------
Confidence 47899998753211 0 2247899999998876665443211 00 00
Q ss_pred ccCCCcccccccceeEeecCcceeecCCCCCCCcceEEEEeC--CeEEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 011187 247 HYHGGVHDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISP--TKVYTLQAENTLDQMDWIEKINGVIASLLS 318 (491)
Q Consensus 247 ~~~~~v~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~--~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~ 318 (491)
..+ ..-.....+.+....|.... .+.+++|.|... ..+|+|+|.|+++++.|+++|+.+|.....
T Consensus 263 -~~~----~~y~~k~~i~l~~~~v~e~~--~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 263 -EKA----PSYSYKQSLNMTAVGITENV--KGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp -CCS----CEEEEEEEEEGGGEEEECCB--TTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC----CeEEEEEEeEcccceeeEcC--CCCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 00012233444444443322 123688999874 478999999999999999999999977654
No 109
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=97.15 E-value=6.2e-05 Score=79.85 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCC-CcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWN-SAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~-~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..+++|.|.+. +.++.|||+|.++-+|+......... ++.. ..| ..... ..
T Consensus 252 ~li~eG~l~~~-----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~---------------~~f----~~~~~----~~ 303 (510)
T 3jzy_A 252 KLLHSGKLYKT-----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSE---------------KLF----SSKSN----AQ 303 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEeceEEEc-----CCCcEEEEEcccceeEEeeecccccccCCcc---------------ccc----Ccccc----cc
Confidence 46788888765 35789999999877655432221100 0000 000 00000 00
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQ 320 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~ 320 (491)
.......+.+....|....+....+++|+|.++.++|+|+|.|+++++.||++|+.+|.......
T Consensus 304 ~~v~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~ 368 (510)
T 3jzy_A 304 FKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTE 368 (510)
T ss_dssp -----------------------------------------------------------------
T ss_pred eeEEcCceehhheEEeccCCCCccccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112233444444443333345689999999999999999999999999999999998775543
No 110
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=97.13 E-value=0.0035 Score=62.15 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=64.8
Q ss_pred ceeEEEEEeecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..+.+|-+....+. ..+..+.|+|+|.++-+++..+..... +..
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~------------------~~~----------------- 246 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS------------------GRS----------------- 246 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT------------------CCE-----------------
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC------------------CCc-----------------
Confidence 46677877654332 235678999999988766543322110 000
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEe-----CCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIIS-----PTKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t-----~~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
.-.....+.+....|....+ +.+++|.|.. +...|+|+|.|+++++.||.+|+.+|...
T Consensus 247 ~y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 247 KYLYKSKLFTSELGVTEHVE--GDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp EEEEEEEEEGGGEEEECCCT--TCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred eeEEeeeeeccceeeEEccC--CCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 00122344454445543222 2368899987 34689999999999999999999999754
No 111
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.13 E-value=0.018 Score=66.58 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=67.8
Q ss_pred ceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCC-CCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 177 QTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSW-NSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 177 ~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~-~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..+++|.|.+.+++ +.|||+|.++-+++..+..... .+|+. + ..
T Consensus 443 ~Li~eG~l~~~~~k-----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~-------------~------------~~----- 487 (1049)
T 3ksy_A 443 EFIMEGTLTRVGAK-----HERHIFLFDGLMICCKSNHGQPRLPGAS-------------N------------AE----- 487 (1049)
T ss_dssp CCCCEEEEEETTCS-----SCEEEEEETTEEEEEECCTTCCCCTTSC-------------C------------CS-----
T ss_pred eEEEeceEEEEccC-----ceEEEEeeCCeEEEEEecCccCCCCCCC-------------C------------Cc-----
Confidence 46899999987532 7899999987766544332211 00000 0 00
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
-.....+.+....|....+....+++|.|...+ .+|+|+|.|++|++.||++|+.+.....
T Consensus 488 -y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~~ 549 (1049)
T 3ksy_A 488 -YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRST 549 (1049)
T ss_dssp -CCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 012234445444554433444568999999876 5999999999999999999998875443
No 112
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=96.96 E-value=0.0043 Score=59.55 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=77.3
Q ss_pred hhhhhhHHHHHHHHHHhccCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 9 AFNGDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 9 ~Fd~~~~~yd~~~~ky~~lsk~k--~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+-+...-+||.+..++.++.+++ .+..+..+++++..++..|....=++...|..+...+.-.+...+..|+.+|..|
T Consensus 152 KR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f 231 (251)
T 2fic_A 152 KRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENF 231 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778998888887765554 4667788999999999999988888888999888777777778999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVL 105 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~ 105 (491)
|.++++++.+|.+-|.+|.
T Consensus 232 ~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 232 HKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999888887653
No 113
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=96.94 E-value=0.0029 Score=63.63 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=31.1
Q ss_pred CcceEEEEeC----CeEEEEEeCCHHHHHHHHHHHHHHH
Q 011187 279 LRFCFRIISP----TKVYTLQAENTLDQMDWIEKINGVI 313 (491)
Q Consensus 279 r~fcF~I~t~----~rt~~lqAeSe~e~~~WI~ai~~ai 313 (491)
.+++|.|... ..+|+|+|.|+++++.||++|+.||
T Consensus 307 ~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 307 VKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp TSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 3689999853 5799999999999999999999987
No 114
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=96.86 E-value=0.0088 Score=60.43 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=63.4
Q ss_pred ceeEEEEEeecCCC----cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCc
Q 011187 177 QTIKQGYLSKRSSN----LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGV 252 (491)
Q Consensus 177 ~~~keGyL~Krs~~----~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v 252 (491)
..+++|-+....+. ..+.++.|||+|.++-+++........ .++ ....
T Consensus 206 ~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~-~~~-------------------------~~~~-- 257 (354)
T 2rgn_B 206 KLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGV-RGG-------------------------TQPG-- 257 (354)
T ss_dssp CEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC----------------------------------CC--
T ss_pred cccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCC-CCC-------------------------CCCc--
Confidence 47788887654321 234678999999988765543332110 000 0000
Q ss_pred ccccccceeEeecCcceeecCCCCCCCcceEEEEeC-----CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 253 HDEKSVARHTVNLLTSTIKPDADQSDLRFCFRIISP-----TKVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 253 ~~~~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~-----~rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
-.....+.+....|....+ +.+++|.|... ...|+|+|.|.++++.||.+|+.+|...
T Consensus 258 ----y~~k~~i~l~~~~v~~~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 320 (354)
T 2rgn_B 258 ----YVYKNSIKVSCLGLEGNLQ--GDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ 320 (354)
T ss_dssp ----EEEEEEEEGGGEEEEESGG--GCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ----eEEcceeeccceeeeeccC--CCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 0122344454444443221 23688999873 3689999999999999999999999653
No 115
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=96.74 E-value=0.01 Score=56.36 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=78.9
Q ss_pred hhhhHHHHHHHHHHhccCC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 11 NGDGNFVLQAREKFLSLRK----STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 11 d~~~~~yd~~~~ky~~lsk----~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+...-+||.+..++.++.. ++.+..+..++.++..++..|....=.+...|..+...+.-.+...+..|+.+|..|
T Consensus 139 ~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~ 218 (244)
T 1uru_A 139 NRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVF 218 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888777653 344666777888999999999988888888999998887777888999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 011187 87 FKQGYELLHQMEPFINQVLA 106 (491)
Q Consensus 87 f~~g~e~~~~l~~~~~~l~~ 106 (491)
|.+..++++.|.+.++.+..
T Consensus 219 ~~~~~~~~~~l~~~~~~l~~ 238 (244)
T 1uru_A 219 HNETAKIYSELEAIVDKLAT 238 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999888887777765
No 116
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.83 E-value=0.032 Score=61.19 Aligned_cols=96 Identities=19% Similarity=0.372 Sum_probs=57.5
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
..+++.||+.|+++.+...|+||++.|..++ +-++..... ++
T Consensus 557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r-~e~~~e~~~-~~------------------------------------ 598 (689)
T 3v5w_A 557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNR-LEWRGEGEA-PQ------------------------------------ 598 (689)
T ss_dssp SCCCEEEEEEEC-------CEEEEEEEETTE-EEEECTTSC-CC------------------------------------
T ss_pred CcceeecccccCCCcccchhhhhccccCCCc-ccccccCCC-Cc------------------------------------
Confidence 3578999999998766678999999997665 333222111 00
Q ss_pred cccceeEeecCc-ceeecCCCCCCCcceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLT-STIKPDADQSDLRFCFRIISPT-KVYTLQAENTLDQMDWIEKINGVIASL 316 (491)
Q Consensus 256 ~~~~~~~i~l~~-~~v~~~~~~~~r~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ai~~~ 316 (491)
..+.+.. ..|.. ......++|.+.+.+ ++|.++++|+.++.+|+.+|+.+-..+
T Consensus 599 -----~l~~~~~v~~v~k--~~i~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~~~~ 654 (689)
T 3v5w_A 599 -----SLLTMEEIQSVEE--TQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREA 654 (689)
T ss_dssp -----EEEEGGGEEEEEE--EESSSCEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred -----ceeeecccccccc--CcCCCCcceeeeecCCcEEEEECCChHHHHHHHHHHHHHHHHH
Confidence 0000000 01110 122346789998776 899999999999999999999876433
No 117
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=95.71 E-value=0.18 Score=48.17 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHhccCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 011187 13 DGNFVLQAREKFLSLRK--STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQG 90 (491)
Q Consensus 13 ~~~~yd~~~~ky~~lsk--~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g 90 (491)
..-+||.++.++-+|.. +|.+..+..++++|..|+..|...-=.++-.|..+-....--+...+.+|+..|..||...
T Consensus 142 KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~~L~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~ 221 (243)
T 4a3a_A 142 KLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEI 221 (243)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45579999888866543 3456777889999999999998888888888888755543334556779999999999999
Q ss_pred HHHHhhhHHHHHHHHH
Q 011187 91 YELLHQMEPFINQVLA 106 (491)
Q Consensus 91 ~e~~~~l~~~~~~l~~ 106 (491)
..+..+|.+-|.+|..
T Consensus 222 ~k~~~~l~~~~~~~~~ 237 (243)
T 4a3a_A 222 AVLCHKLYEVMTKLGD 237 (243)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHh
Confidence 9999888888777664
No 118
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.58 E-value=1.2 Score=49.42 Aligned_cols=91 Identities=14% Similarity=0.304 Sum_probs=56.6
Q ss_pred eeEEEEEeecCCC-cccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCccccc
Q 011187 178 TIKQGYLSKRSSN-LRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDEK 256 (491)
Q Consensus 178 ~~keGyL~Krs~~-~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~~ 256 (491)
++..|||...... .+.+=+..||||+... |.||++++....
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------------------- 581 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAEN-LSWYKDDEEKEK------------------------------------- 581 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSE-EEEESSTTCCCE-------------------------------------
T ss_pred ceeeeeeeecccccccCCCccceeeccccc-cccccchhhhcc-------------------------------------
Confidence 7899999976544 3456788999998665 888888655210
Q ss_pred ccceeEeecCcceeecC-CCCCCCcceEEEEeCC--------eEEEEEeCCHHHHHHHHHHH
Q 011187 257 SVARHTVNLLTSTIKPD-ADQSDLRFCFRIISPT--------KVYTLQAENTLDQMDWIEKI 309 (491)
Q Consensus 257 ~~~~~~i~l~~~~v~~~-~~~~~r~fcF~I~t~~--------rt~~lqAeSe~e~~~WI~ai 309 (491)
.-.+.+....++.. ..--.+++.|.|..++ +.+.|.|+|.++.+.|...+
T Consensus 582 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 640 (772)
T 3zvr_A 582 ---KYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASF 640 (772)
T ss_dssp ---EEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHH
T ss_pred ---cccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhh
Confidence 01122222222211 0112457889998765 47889999999999999766
No 119
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=95.45 E-value=0.18 Score=47.87 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=75.1
Q ss_pred hhhhHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 011187 11 NGDGNFVLQAREKFLSLRKS--TRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFK 88 (491)
Q Consensus 11 d~~~~~yd~~~~ky~~lsk~--k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~ 88 (491)
+...-+||.+.+++.++..+ |.+..+..++.++..++..|...-=.+.-.|..+-....--+...+.+|+..+..||.
T Consensus 135 ~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~ 214 (237)
T 4avm_A 135 GRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYR 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566889888888776444 4566778889999999999988888888888887554433344567799999999999
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 011187 89 QGYELLHQMEPFINQVLA 106 (491)
Q Consensus 89 ~g~e~~~~l~~~~~~l~~ 106 (491)
....++..|.+-|.+|..
T Consensus 215 ~~~~~~~~l~~~~~~~~~ 232 (237)
T 4avm_A 215 EMSKLNHNLYEVMSKLER 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 999988888888887765
No 120
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=95.07 E-value=0.054 Score=52.49 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred EeecCcceeecC-CCCCCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 262 TVNLLTSTIKPD-ADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 262 ~i~l~~~~v~~~-~~~~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
.+.|..|.+... .....++++|+|.+++ .+++|+|++.+++..|+.+|+.+|.
T Consensus 207 ~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 207 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp EEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred ccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 445555554321 1122378999999997 5899999999999999999999873
No 121
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=94.54 E-value=0.089 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=41.1
Q ss_pred eEeecCcceeecC--CCCCCCcceEEEEeCC--eEEEEEeCCHHHHHHHHHHHHHHHH
Q 011187 261 HTVNLLTSTIKPD--ADQSDLRFCFRIISPT--KVYTLQAENTLDQMDWIEKINGVIA 314 (491)
Q Consensus 261 ~~i~l~~~~v~~~--~~~~~r~fcF~I~t~~--rt~~lqAeSe~e~~~WI~ai~~ai~ 314 (491)
..|.|.-|-|... ..+ .++.+|||.+++ .+.+|+|.+..+...|+.+|+..|.
T Consensus 121 ~~IPLkMayvtR~~~~tD-~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 121 KHVSLKMAYVSRRCTPTD-PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp EEEETTTCEEEEECCSSC-CSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHhccCCC-CCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4566766665322 222 367899999998 5899999999999999999998873
No 122
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=92.91 E-value=0.27 Score=41.64 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=61.8
Q ss_pred cceeEEEEEeecCCCcccCceEEEEEEecCceEEEEecCCCCCCcCCCccccccCCCCCccccccccccccccCCCcccc
Q 011187 176 VQTIKQGYLSKRSSNLRADWKRRFFVLDSRGLLYYYRKPWSWNSAAGSQSSIQRSNPSETSQGLLSRWLSSHYHGGVHDE 255 (491)
Q Consensus 176 ~~~~keGyL~Krs~~~~k~WkrRwFvL~~~g~L~Yyk~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~s~~~~~v~~~ 255 (491)
...+++|.+....+. ..=+.|+++|..+.+|+.-.. +. .+. ..+
T Consensus 8 G~Ll~q~~f~V~~~~--~k~~eR~vFLFe~~ilf~K~~--~~-~~~---------------------------~~Y---- 51 (119)
T 1fho_A 8 GRIIRHDAFQVWEGD--EPPKLRYVFLFRNKIMFTEQD--AS-TSP---------------------------PSY---- 51 (119)
T ss_dssp CCSSEEEEEEECSTT--CSCEEEEEEEETTEEEEEEEC--CS-SSS---------------------------CCC----
T ss_pred CCccccCceEEEeCC--CCcceEEEEEecCcEEEEEEe--cC-CCC---------------------------CcE----
Confidence 346789999877543 234678999987775554332 21 000 001
Q ss_pred cccceeEeecCcceeecCCCCCCCcceEEEEeCC--eEEEE--EeCCHH-HHHHHHHHHHHHHHH
Q 011187 256 KSVARHTVNLLTSTIKPDADQSDLRFCFRIISPT--KVYTL--QAENTL-DQMDWIEKINGVIAS 315 (491)
Q Consensus 256 ~~~~~~~i~l~~~~v~~~~~~~~r~fcF~I~t~~--rt~~l--qAeSe~-e~~~WI~ai~~ai~~ 315 (491)
.....+.+....+....++ +.+..|+|..+. ..|.+ ||.|.+ ..+.||..|+..+..
T Consensus 52 --~~K~~ikl~~~~lte~~~~-~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~ 113 (119)
T 1fho_A 52 --THYSSIRLDKYNIRQHTTD-EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEK 113 (119)
T ss_dssp --SSCCEEESSSCEEEEECTT-CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHH
T ss_pred --EEeeEEeeceeEEEecCCC-CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHH
Confidence 1123344444455443321 235679998876 47788 999999 999999999875443
No 123
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=91.91 E-value=0.99 Score=42.35 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=68.9
Q ss_pred hhhhhhhHHHHHHHHHHhccCCC---CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKS---TRM-DVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAH 83 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~---k~~-~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~ 83 (491)
++|+.+--.||+++...-.++-. .++ ..+..+..+...+|..|.+.+.|.+.+|..|..++.-.+...|..|..+.
T Consensus 109 k~ye~aR~EY~ay~~~~ee~~~~~~~~~~l~rve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al 188 (224)
T 1i4d_A 109 KQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAV 188 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHhhHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 56777778888888655544422 111 23355777889999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHhh
Q 011187 84 LRFFKQGYELLHQ 96 (491)
Q Consensus 84 ~~~f~~g~e~~~~ 96 (491)
..||...++.++.
T Consensus 189 ~~y~~~~~~~l~~ 201 (224)
T 1i4d_A 189 SAYFAGNQKQLEQ 201 (224)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHhHHHHHH
Confidence 9999999888854
No 124
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=85.06 E-value=0.33 Score=33.85 Aligned_cols=38 Identities=29% Similarity=0.705 Sum_probs=30.9
Q ss_pred CCCcccCCCCCC-CCceeeccceeEecccccccccCCCC
Q 011187 402 GNNKCADCGASE-PDWASLNLGVLICIQCSGVHRNLGVH 439 (491)
Q Consensus 402 ~N~~C~dCg~~~-p~w~s~n~gv~~C~~CsgiHr~lg~~ 439 (491)
....|.+|+... |.|-.-..|..||-.|.-.++..|++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 457899999975 79999999999999998766665543
No 125
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=81.37 E-value=0.57 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.570 Sum_probs=28.7
Q ss_pred CcccCCCCCC-CCceeeccceeEecccccccccCCC
Q 011187 404 NKCADCGASE-PDWASLNLGVLICIQCSGVHRNLGV 438 (491)
Q Consensus 404 ~~C~dCg~~~-p~w~s~n~gv~~C~~CsgiHr~lg~ 438 (491)
..|++|+... |.|-.-..|..||-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 4799999975 7999999999999999876555543
No 126
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=78.77 E-value=0.54 Score=35.07 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=31.2
Q ss_pred cCCCcccCCCCCC-CCceeeccceeEecccccccccCCC
Q 011187 401 YGNNKCADCGASE-PDWASLNLGVLICIQCSGVHRNLGV 438 (491)
Q Consensus 401 ~~N~~C~dCg~~~-p~w~s~n~gv~~C~~CsgiHr~lg~ 438 (491)
.....|++|+... |.|-.-..|..||-.|.-..+..|+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567999999975 7999999999999999876666554
No 127
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=77.33 E-value=0.94 Score=34.10 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=30.4
Q ss_pred CCCcccCCCCCC-CCceeeccceeEecccccccccCCC
Q 011187 402 GNNKCADCGASE-PDWASLNLGVLICIQCSGVHRNLGV 438 (491)
Q Consensus 402 ~N~~C~dCg~~~-p~w~s~n~gv~~C~~CsgiHr~lg~ 438 (491)
....|++||... |.|-.-.-|-.||-.|.-..+..|+
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 457999999965 8999999999999999766665554
No 128
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=76.11 E-value=52 Score=30.88 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHH
Q 011187 38 VIEEDLHNARTSFEQARFNLVGALSN---VEAKKRFEL--LEAVGGTMDAHLRFFKQGYELL 94 (491)
Q Consensus 38 E~~~~L~~~Rk~f~~asldyv~~l~~---lq~kk~~e~--le~l~~~~~a~~~~f~~g~e~~ 94 (491)
++-..+.+.||.|.+++.+|-.++.. +..+|..+. -|.-..+..+...|.+...|.+
T Consensus 121 ~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv 182 (265)
T 2q12_A 121 RDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYF 182 (265)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778999999999999977776 433333322 2333444444444444444333
No 129
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=72.26 E-value=8.9 Score=42.78 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.4
Q ss_pred cceEEEEeCC-----eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 280 RFCFRIISPT-----KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 280 ~fcF~I~t~~-----rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
..||.|+... +.+.|.|.++++.+.|+..|+..+....
T Consensus 103 ~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~~~ 145 (816)
T 3qr0_A 103 DKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYNLL 145 (816)
T ss_dssp HHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTCHH
T ss_pred ccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999875 2458999999999999999998775444
No 130
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=72.17 E-value=5.5 Score=44.41 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=31.8
Q ss_pred cceEEEEeCC-----eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 280 RFCFRIISPT-----KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 280 ~fcF~I~t~~-----rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
..||.|+... +++.|.|.++++.+.|+..|+..+....
T Consensus 96 ~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~ 138 (799)
T 2zkm_X 96 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL 138 (799)
T ss_dssp GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred cceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 5699999865 3689999999999999999998776543
No 131
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=69.42 E-value=29 Score=31.30 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=52.8
Q ss_pred hhhhhhhHHHHHHHHHHhccCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRK-STRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRF 86 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk-~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~ 86 (491)
+.|+++-..||+.--|--.|.| +|..+.++--..-|..+--.|.+---|++..|+.|-..+---|-+.....|.-++.|
T Consensus 122 ~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkll~n~~riineaasavwstqlqy 201 (294)
T 3caz_A 122 KETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKMETVWKKHVSIFAEAASAVWSTQLQY 201 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777666666666 344455554555566666666666666666666665444444445555555555555
Q ss_pred HHHHHHHHhhhHHHH
Q 011187 87 FKQGYELLHQMEPFI 101 (491)
Q Consensus 87 f~~g~e~~~~l~~~~ 101 (491)
-+..-....-+-||+
T Consensus 202 akaleaaanpivpyl 216 (294)
T 3caz_A 202 AKALEAAANPIVPYL 216 (294)
T ss_dssp HHHHHHHHGGGGGGG
T ss_pred HHHHHHhcCCCchhh
Confidence 443333333444443
No 132
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=67.82 E-value=4.8 Score=45.32 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=31.9
Q ss_pred cceEEEEeCC-----eEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 011187 280 RFCFRIISPT-----KVYTLQAENTLDQMDWIEKINGVIASLL 317 (491)
Q Consensus 280 ~fcF~I~t~~-----rt~~lqAeSe~e~~~WI~ai~~ai~~~l 317 (491)
..||.|+... +++.|.|.++++.+.|+..|+..+...+
T Consensus 100 ~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~~~ 142 (885)
T 3ohm_B 100 EKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNIL 142 (885)
T ss_dssp TTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHCHH
T ss_pred ccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhhhh
Confidence 5789999865 2689999999999999999998776553
No 133
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=67.74 E-value=1.7 Score=36.37 Aligned_cols=37 Identities=30% Similarity=0.737 Sum_probs=29.0
Q ss_pred CCcccCCCCC-CCCceeeccceeEecccccccccCCCC
Q 011187 403 NNKCADCGAS-EPDWASLNLGVLICIQCSGVHRNLGVH 439 (491)
Q Consensus 403 N~~C~dCg~~-~p~w~s~n~gv~~C~~CsgiHr~lg~~ 439 (491)
...|++||+. -|.|-.-.-|-+||..|.-.++..|.+
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 3689999996 489999899999999997655544443
No 134
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=66.47 E-value=1.1 Score=34.15 Aligned_cols=35 Identities=23% Similarity=0.602 Sum_probs=28.3
Q ss_pred CCcccCCCCCC-CCcee--eccceeEecccccccccCCC
Q 011187 403 NNKCADCGASE-PDWAS--LNLGVLICIQCSGVHRNLGV 438 (491)
Q Consensus 403 N~~C~dCg~~~-p~w~s--~n~gv~~C~~CsgiHr~lg~ 438 (491)
...|++|+... |.|-. -.-| .||-.|.-..+..|+
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 46899999965 79998 5667 899999877776664
No 135
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=65.05 E-value=3 Score=39.32 Aligned_cols=32 Identities=31% Similarity=0.777 Sum_probs=26.9
Q ss_pred cCCCcccCCCCCCCCceeeccceeEecccccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGV 432 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~Csgi 432 (491)
|.-..|+.||.++..|.+...|.++|..|...
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~ 179 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAAL 179 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSS
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCC
Confidence 45578999999966788999999999999653
No 136
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=60.85 E-value=21 Score=35.61 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 011187 41 EDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQME 98 (491)
Q Consensus 41 ~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~ 98 (491)
.++.++++.|...+-.....|...+..+..+|-..|..|+..+..|+++..+.++.+-
T Consensus 303 ~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l 360 (366)
T 3dyt_A 303 QDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQAL 360 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888889888888888999999999999999999999999999999888776643
No 137
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=57.48 E-value=41 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011187 92 ELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYL 130 (491)
Q Consensus 92 e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~ 130 (491)
+-+..++..++.|++.+..+-.+|+..+.+|.+++..+.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888999999999999999999888888876543
No 138
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=57.02 E-value=45 Score=33.58 Aligned_cols=59 Identities=8% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 011187 41 EDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEP 99 (491)
Q Consensus 41 ~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~ 99 (491)
.++.++++.|...+-.....|...+..+..+|-..|..|+..+..|+++-.+.++.+-+
T Consensus 323 ~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~ 381 (386)
T 4akv_A 323 DEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLR 381 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999888899999999999999999999999999999998887766443
No 139
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=56.48 E-value=99 Score=29.18 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=26.1
Q ss_pred HHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 62 SNVEAKKRFE-LLEAVGGTMDAHLRFFKQGYELLHQ 96 (491)
Q Consensus 62 ~~lq~kk~~e-~le~l~~~~~a~~~~f~~g~e~~~~ 96 (491)
-.+++|++|- |++.++.++.....|+.++.+++..
T Consensus 189 aL~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~ 224 (253)
T 2ykt_A 189 ALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQ 224 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666664 4788899999999888887776655
No 140
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=55.17 E-value=1.7e+02 Score=28.96 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 38 VIEEDLHNARTSFEQARFNLVGALSNV 64 (491)
Q Consensus 38 E~~~~L~~~Rk~f~~asldyv~~l~~l 64 (491)
++-..+.+.|+.|.+++.+|-.++...
T Consensus 121 ~di~~~ke~kk~fek~~~~yd~al~k~ 147 (385)
T 2q13_A 121 RDLKEILTLKEVFQIASNDHDAAINRY 147 (385)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688999999999999888774
No 141
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=47.48 E-value=68 Score=24.38 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 011187 92 ELLHQMEPFINQVLAYAQQSRECSDYEQASLHQRMQDYLKQID 134 (491)
Q Consensus 92 e~~~~l~~~~~~l~~~l~~~r~~~~~~~~~l~~~~~~~~~~~~ 134 (491)
+-+..|+..++.|++.+..+-.+|+..+.+|.+++..+..++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888999999999889999988888888776655443
No 142
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=47.01 E-value=7.5 Score=32.45 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=31.9
Q ss_pred cCCCcccCCCCCC-CCceeeccceeEecccccccccCCCC
Q 011187 401 YGNNKCADCGASE-PDWASLNLGVLICIQCSGVHRNLGVH 439 (491)
Q Consensus 401 ~~N~~C~dCg~~~-p~w~s~n~gv~~C~~CsgiHr~lg~~ 439 (491)
.....|++|+... |.|-.-..|-.||-.|.-..+..|++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 3568999999965 89999999999999998766666543
No 143
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=46.73 E-value=4.7 Score=33.45 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCcccCCCCCCCCc-eeeccceeEecccccc
Q 011187 402 GNNKCADCGASEPDW-ASLNLGVLICIQCSGV 432 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w-~s~n~gv~~C~~Csgi 432 (491)
....|.+||...-++ ..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 456799999975544 3568999999999864
No 144
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=42.58 E-value=8.1 Score=30.69 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=24.2
Q ss_pred CCCcccCCCCCCCCceeeccceeEecccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr 434 (491)
|+..|.-||.+.. ...|||+.|..|++..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5678999997653 56899999999998765
No 145
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=40.94 E-value=2.3e+02 Score=26.50 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKR 69 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k--~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~ 69 (491)
++|+.....++.+..++....+.. ...-+.-....+..+......+.=+|...|+.++..+.
T Consensus 137 k~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~ 200 (301)
T 2efk_A 137 RKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQA 200 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544321110 01112233444455555566777888887777765533
No 146
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=40.29 E-value=2.3e+02 Score=26.41 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=31.2
Q ss_pred chhhhhhhHHHHHHHHHHhccCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 7 TVAFNGDGNFVLQAREKFLSLRKST--RMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAK 67 (491)
Q Consensus 7 ~~~Fd~~~~~yd~~~~ky~~lsk~k--~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~k 67 (491)
+++|+.....++.+..++....+.- .+.-+.-....+..++.....+.=+|...|..++..
T Consensus 143 K~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 143 KRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654332110 111122233334444445566777787777777654
No 147
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=38.88 E-value=2.2e+02 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=27.6
Q ss_pred cceEEEEeCC-eEEEEEeCCHHHHHHHHHHHHH
Q 011187 280 RFCFRIISPT-KVYTLQAENTLDQMDWIEKING 311 (491)
Q Consensus 280 ~fcF~I~t~~-rt~~lqAeSe~e~~~WI~ai~~ 311 (491)
...|.|+... .++.|.|.|+.+...|++.|+.
T Consensus 115 ~laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~ 147 (203)
T 3a98_B 115 ELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNA 147 (203)
T ss_dssp GGEEEEEETTTEEEEEECSSHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCceEEEecCCHHHHHHHHHHHHH
Confidence 3689998764 6899999999999999999974
No 148
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.57 E-value=2.6e+02 Score=28.17 Aligned_cols=31 Identities=13% Similarity=-0.188 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 011187 13 DGNFVLQAREKFLSLRKSTRMDVAVVIEEDLH 44 (491)
Q Consensus 13 ~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~ 44 (491)
.+..+...+.+++.= +....+.+.+++.++.
T Consensus 353 ~~~~~~~~~~~vl~G-~~t~eeal~~~~~~i~ 383 (471)
T 3mq9_A 353 FWYAVRTAVINAASG-RQTVDEALKDAQTRIT 383 (471)
T ss_dssp HHHHHHHHHHHHHHS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555555555542 2233445555544443
No 149
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=37.36 E-value=10 Score=31.10 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=25.5
Q ss_pred cCCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
+.+..|.-||.+. ....||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 4567899999753 3678999999999997764
No 150
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.88 E-value=18 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=20.4
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiH 433 (491)
..|.+||.....+ ...-|..+|..|.-|-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 3799999865322 3356999999996543
No 151
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=35.50 E-value=7 Score=34.27 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=23.2
Q ss_pred cCCCcccCCCCCCC-CceeeccceeEeccccccc
Q 011187 401 YGNNKCADCGASEP-DWASLNLGVLICIQCSGVH 433 (491)
Q Consensus 401 ~~N~~C~dCg~~~p-~w~s~n~gv~~C~~CsgiH 433 (491)
..-..|.+||.+=| .-.-..-++.+|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 45679999999754 1222334788999998765
No 152
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=35.40 E-value=10 Score=30.07 Aligned_cols=31 Identities=19% Similarity=0.594 Sum_probs=25.3
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 6 SGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp SSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 4568999997654 568999999999997764
No 153
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=34.62 E-value=13 Score=29.06 Aligned_cols=31 Identities=23% Similarity=0.549 Sum_probs=25.4
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
....|.-||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4568999997643 679999999999997764
No 154
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=34.22 E-value=31 Score=30.08 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.0
Q ss_pred cceeEecccccccccCCCCcccceecccCCCCCCHHHHHHHHHhchHHHHHHHhcccCCC
Q 011187 421 LGVLICIQCSGVHRNLGVHISKVRSLTLDVKVWEPSVLNLFQSLGNIYANSVWEELLRIG 480 (491)
Q Consensus 421 ~gv~~C~~CsgiHr~lg~~is~Vks~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~ 480 (491)
+|++.|..|..-+ .|+++|+++++.+++-.+-.+-.+.+-..
T Consensus 119 ~GlL~~~~~~~~r------------------~w~~~ei~ll~~lA~ql~iAi~qa~l~~~ 160 (171)
T 4glq_A 119 FGLLIAHQASEPR------------------QWQEIEIDQFSELASTGSLVLERLHFLEQ 160 (171)
T ss_dssp EEEEEEEEESSCC------------------CCCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEEEEEEeCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888886522 69999999999999999988887777554
No 155
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=34.22 E-value=2.8e+02 Score=25.50 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 41 EDLHNARTSFEQARFNLVGALSNVE 65 (491)
Q Consensus 41 ~~L~~~Rk~f~~asldyv~~l~~lq 65 (491)
.++..++..+.++.=+|...++.++
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n 187 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYA 187 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777777666665
No 156
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=33.91 E-value=25 Score=28.19 Aligned_cols=28 Identities=29% Similarity=0.678 Sum_probs=22.0
Q ss_pred cCCCcccCCCCCCCC-ceeec--cceeEecc
Q 011187 401 YGNNKCADCGASEPD-WASLN--LGVLICIQ 428 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~-w~s~n--~gv~~C~~ 428 (491)
+....|.+|++..+. |+++. -|-+-|.+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 466789999966555 98888 88888865
No 157
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=33.61 E-value=13 Score=31.05 Aligned_cols=31 Identities=26% Similarity=0.652 Sum_probs=25.3
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+..|.-||.+.. ...|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 3568999997643 679999999999997764
No 158
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=32.88 E-value=9.6 Score=31.68 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=24.3
Q ss_pred cCCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
+.+..|.-||.+. ....|||+.|..|++..|-
T Consensus 7 ~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 7 DLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ---CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 4557899999754 3679999999999997764
No 159
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=32.32 E-value=11 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.682 Sum_probs=23.6
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ...|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997643 568999999999997664
No 160
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=32.07 E-value=15 Score=29.34 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=24.8
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
....|.-||.+.. ...|||+.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 3568999997653 679999999999997764
No 161
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=30.82 E-value=1.7e+02 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 32 RMDVAVVIEEDLHNARTSFEQARFNLVGALSNV 64 (491)
Q Consensus 32 ~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~l 64 (491)
.|+.|+..+.++..........-=++--.++.|
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777778777776665544444444444444
No 162
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=30.24 E-value=2.7e+02 Score=24.18 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=50.6
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 011187 23 KFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGA-LSNVE-AKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPF 100 (491)
Q Consensus 23 ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~-l~~lq-~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~ 100 (491)
++..|=+++.|+-|+++ ..|-...-.|.+...+++.+ +++|. .+.+.+++..|+..+...-..-..-.|++.+|-..
T Consensus 21 ~L~~Lirs~~PeDL~~A-N~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~ 99 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAA-NKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQR 99 (158)
T ss_dssp HHHHHHSSCSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHH-HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHH
Confidence 45556678888888854 46666666688888888853 33443 45667788887776533211100011444444444
Q ss_pred HHHHHHHHHHHHH
Q 011187 101 INQVLAYAQQSRE 113 (491)
Q Consensus 101 ~~~l~~~l~~~r~ 113 (491)
.+.++..|+.+-+
T Consensus 100 Ck~~qp~i~~Li~ 112 (158)
T 1naf_A 100 CERMRPTLFRLAS 112 (158)
T ss_dssp HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 163
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=29.97 E-value=4.6e+02 Score=26.72 Aligned_cols=32 Identities=3% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011187 36 AVVIEEDLHNARTSFEQARFNLVGALSNVEAK 67 (491)
Q Consensus 36 l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~k 67 (491)
+..+...+..++..-.++.=+|...|..++..
T Consensus 187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677778888888877654
No 164
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=29.54 E-value=41 Score=29.89 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011187 14 GNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDA 82 (491)
Q Consensus 14 ~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a 82 (491)
...|++.++|-.+ -+.+++.+....+|.++|..| -.-++|..|+- +.|-.+.+-+.+++|+..
T Consensus 4 ~~~~~q~~~RI~~---~~~~~~AKDI~~Dll~~RHDy--FGre~c~~L~i-eyRnDV~~~dilld~lp~ 66 (184)
T 2xi5_A 4 YQEYQQFLARINT---ARDACVAKDIDVDLLMARHDY--FGRELCKSLNI-EYRNDVPFIDIILDIRPE 66 (184)
T ss_dssp SHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHTC-CCCSSCCHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHc---cCChhHHHhHHHHHHHHHhHH--HHHHHHHHcCc-hhccCCcHHHHHHHHcCC
Confidence 4567888887554 567899999999999999998 44455666654 888888888888877654
No 165
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=28.25 E-value=17 Score=29.13 Aligned_cols=30 Identities=33% Similarity=0.732 Sum_probs=24.2
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
...|.-||.+.. ...||++.|..|++..|-
T Consensus 7 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 7 VLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp -CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 457999997653 678999999999997764
No 166
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.19 E-value=21 Score=28.22 Aligned_cols=28 Identities=32% Similarity=0.818 Sum_probs=22.8
Q ss_pred cccCCCCCCCCceeeccceeEeccccccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997643 579999999999997764
No 167
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=28.17 E-value=83 Score=27.94 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=33.6
Q ss_pred cceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCc
Q 011187 280 RFCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTP 322 (491)
Q Consensus 280 ~fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~~ 322 (491)
...|.|.. +|+|+.+|++.+|+..+|..|-......+.+..|
T Consensus 115 ~~gF~ltl-~K~Y~W~a~s~~Er~~FI~sL~K~y~ky~~G~~P 156 (171)
T 3hie_A 115 SEGFILTM-SKKYYWETNSAKERTVFIKSLITLYIQTFEGHVP 156 (171)
T ss_dssp TTEEEEES-SSEEEEECSSHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred CCcEEEEe-CCeEEEecCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45688877 6999999999999999999998777666544443
No 168
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.56 E-value=3.1e+02 Score=27.36 Aligned_cols=9 Identities=0% Similarity=0.383 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 011187 56 NLVGALSNV 64 (491)
Q Consensus 56 dyv~~l~~l 64 (491)
++--.|+.|
T Consensus 64 ~~~~rIe~L 72 (390)
T 1deq_A 64 DFTSRINKL 72 (390)
T ss_pred hHHHHHHHH
Confidence 333333333
No 169
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=26.58 E-value=15 Score=29.79 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=23.3
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
...|.-||.+.. ...|||+.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997653 568999999999997764
No 170
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.46 E-value=3.5e+02 Score=24.17 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=50.7
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhhhHH
Q 011187 23 KFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGA-LSNVE-AKKRFELLEAVGGTMDAHLRFFKQ-GYELLHQMEP 99 (491)
Q Consensus 23 ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~-l~~lq-~kk~~e~le~l~~~~~a~~~~f~~-g~e~~~~l~~ 99 (491)
++..|=+++.|+-|++ |..|-...-.|.+...+++.+ +++|. .+.+.+++..|+..+...-.. .. -.|++.+|-.
T Consensus 37 ~L~eLirs~~PeDL~~-AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~-~~~d~Ell~eL~~ 114 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRA-ANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAA-AGSSEDLMKELYQ 114 (186)
T ss_dssp HHHHHHSCCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC-TTTTHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHH-HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC-ccccHHHHHHHHH
Confidence 4555777888888875 456666666688888888753 33343 455677777777665221000 00 1244555555
Q ss_pred HHHHHHHHHHHHHH
Q 011187 100 FINQVLAYAQQSRE 113 (491)
Q Consensus 100 ~~~~l~~~l~~~r~ 113 (491)
..+.++..|+.+-+
T Consensus 115 ~Ck~~qp~i~~Li~ 128 (186)
T 1oxz_A 115 RCERMRPTLFRLAS 128 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 171
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=25.94 E-value=1.4e+02 Score=24.88 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=30.0
Q ss_pred cceEEEEeCC------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011187 280 RFCFRIISPT------KVYTLQAENTLDQMDWIEKINGVIAS 315 (491)
Q Consensus 280 ~fcF~I~t~~------rt~~lqAeSe~e~~~WI~ai~~ai~~ 315 (491)
+.-|.|+... +.|.|-|.|.+|+.+=|..|+..++.
T Consensus 74 P~~FKivV~k~~~~e~KrYdfEA~s~~ea~EIV~~ik~~~~~ 115 (121)
T 3ulb_A 74 PEHFKIFVRREGQDDIKRYYFEAVSGQECTEIVTRLQNLLSA 115 (121)
T ss_dssp TTEEEEEECCTTCSSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCCCcceeEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5568877532 79999999999999999999988764
No 172
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=25.46 E-value=19 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=23.4
Q ss_pred CcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 404 NKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 404 ~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
..|.-||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997653 568999999999997764
No 173
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=25.08 E-value=14 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=24.5
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
...|.-||.+.. ...|||+.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 457999997653 678999999999997774
No 174
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.03 E-value=20 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=20.5
Q ss_pred cccCCCcccCCCCCC-------CC----------ceeeccceeEecccc
Q 011187 399 RVYGNNKCADCGASE-------PD----------WASLNLGVLICIQCS 430 (491)
Q Consensus 399 ~~~~N~~C~dCg~~~-------p~----------w~s~n~gv~~C~~Cs 430 (491)
+.+.--.|+|||.+- |. -++-.|| .+|..|-
T Consensus 29 K~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cv 76 (89)
T 3j21_d 29 KKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCM 76 (89)
T ss_dssp CCCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHH
T ss_pred ccCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHH
Confidence 344555899999841 21 2355589 8998884
No 175
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=24.70 E-value=5.1e+02 Score=25.52 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011187 35 VAVVIEEDLHNARTSFEQARFNLVGALSNVEAKKRFELLEAVGGTMDAHLRFFKQGYELLHQMEPFINQVLAYAQQSREC 114 (491)
Q Consensus 35 ~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk~~e~le~l~~~~~a~~~~f~~g~e~~~~l~~~~~~l~~~l~~~r~~ 114 (491)
.+.|-+..|.+.+-.|..+-|.|....+.=+-+-.-.-++.|-.-++.+ .. .++.-+..+-+|..+|..+|..
T Consensus 487 qitekenalkevkgayrealfsyfeeyqkgegkwdqakldqlknqvdgy----ek---sikkqesaiyelhnqidalrka 559 (761)
T 4fye_A 487 QITEKENALKEVKGAYREALFSYFEEYQKGEGKWDQAKLDQLKNQVDGY----EK---SIKKQESAIYELHNQIDALRKA 559 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHhcchH----HH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999987665444332222233332222222 21 2344455666777777777766
Q ss_pred HHHHHH-HHHHHHHHHHHHH
Q 011187 115 SDYEQA-SLHQRMQDYLKQI 133 (491)
Q Consensus 115 ~~~~~~-~l~~~~~~~~~~~ 133 (491)
|--+-+ ++.+.++.+++++
T Consensus 560 yytehkgqinkalqelkeqi 579 (761)
T 4fye_A 560 YYTEHKGQINKALQELKEQI 579 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHhc
Confidence 654433 5555555555554
No 176
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=24.44 E-value=17 Score=29.99 Aligned_cols=30 Identities=23% Similarity=0.705 Sum_probs=24.0
Q ss_pred CCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 403 NNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 403 N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
...|.-||.+.. ...||++.|..|++..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 357999997653 568999999999997764
No 177
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.38 E-value=4.7e+02 Score=26.01 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHH
Q 011187 8 VAFNGDGNFVLQAREKFLSLRKSTRMDVAVVIEEDLHNARTSFEQARFNLVGALSNVEAKK---RFELLEAVGGTMD 81 (491)
Q Consensus 8 ~~Fd~~~~~yd~~~~ky~~lsk~k~~~~l~E~~~~L~~~Rk~f~~asldyv~~l~~lq~kk---~~e~le~l~~~~~ 81 (491)
+.|+++-...+.+..+|-...+.++-+. +...+..+...-..+.=+|+.+|+..+.-+ ..+-++.++..++
T Consensus 141 k~Y~~~cke~e~A~~k~~~~~k~ke~eK---~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ 214 (406)
T 4dyl_A 141 SQYRALARDSAQAKRKYQEASKDKDRDK---AKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQ 214 (406)
T ss_dssp HHHHHHHHHHHHHHHCC---------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555555554433222111 112222233333334446766666554222 2233444444443
No 178
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=24.19 E-value=48 Score=29.68 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=21.5
Q ss_pred cccCCCCCCCCce-eeccceeEecccccc
Q 011187 405 KCADCGASEPDWA-SLNLGVLICIQCSGV 432 (491)
Q Consensus 405 ~C~dCg~~~p~w~-s~n~gv~~C~~Csgi 432 (491)
.|.+||...+.-+ ...-|-.+|.+|.-|
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 7999998545444 346799999999765
No 179
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.17 E-value=36 Score=28.83 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=24.0
Q ss_pred cCCCcccCCCCCCCCceeeccceeEeccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQC 429 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~C 429 (491)
|.+..|.+|+....-|+++.-|.+-|.+=
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCCCcCccccCcCceEEeccCCccccCcc
Confidence 45568999999988899999998888654
No 180
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=23.93 E-value=9.2 Score=31.52 Aligned_cols=33 Identities=30% Similarity=0.693 Sum_probs=22.9
Q ss_pred CCCcccCCCCCCC-CceeeccceeEecccccccc
Q 011187 402 GNNKCADCGASEP-DWASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 402 ~N~~C~dCg~~~p-~w~s~n~gv~~C~~CsgiHr 434 (491)
.-..|.+||.+=| .-.-..-++.+|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 3579999999755 22223347889999997543
No 181
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=23.46 E-value=13 Score=29.20 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=24.9
Q ss_pred CCCcccCCCCCCCCceeeccceeEeccccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4568999997643 568999999999997764
No 182
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=23.14 E-value=1.2e+02 Score=29.32 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=35.3
Q ss_pred ceEEEEeCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCcc
Q 011187 281 FCFRIISPTKVYTLQAENTLDQMDWIEKINGVIASLLSFQTPE 323 (491)
Q Consensus 281 fcF~I~t~~rt~~lqAeSe~e~~~WI~ai~~ai~~~l~~~~~~ 323 (491)
-.|.|.. +|.|+.+|++.+|++.+|..|-....+.+.+..|+
T Consensus 186 ~gF~LTl-~K~YyW~A~s~kER~~FI~sLvKiy~KYtgGk~P~ 227 (320)
T 3a58_A 186 EGFILTM-SKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPE 227 (320)
T ss_dssp TEEEEES-SSEEEEEESSHHHHHHHHHHHHHHHHHHTTTCBCE
T ss_pred CceEEEe-CCceEEecCCHHHHHHHHHHHHHHHHHHcCCCCCe
Confidence 5687777 89999999999999999999988888777655553
No 183
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=22.99 E-value=23 Score=36.14 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=24.0
Q ss_pred cCCCcccCCCCCCCCceeeccceeEecccccccc
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr 434 (491)
..+..|.-||.+... ..|||..|..|++..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346789999987653 5899999999998654
No 184
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=22.07 E-value=5.7e+02 Score=25.12 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011187 37 VVIEEDLHNARTSFEQARFNLVGALSNVE 65 (491)
Q Consensus 37 ~E~~~~L~~~Rk~f~~asldyv~~l~~lq 65 (491)
.++-..+.+.||.|.+++-+|...+....
T Consensus 143 k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~ 171 (407)
T 4h8s_A 143 EKDLTEVSTLKDLFGLASNEHDLSMAKYS 171 (407)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999987777653
No 185
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.38 E-value=49 Score=27.06 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=22.8
Q ss_pred cCCCcccCCCCCCCCceeeccceeEec
Q 011187 401 YGNNKCADCGASEPDWASLNLGVLICI 427 (491)
Q Consensus 401 ~~N~~C~dCg~~~p~w~s~n~gv~~C~ 427 (491)
+....|.+|+.....|+++.-|-+-|.
T Consensus 22 ~~~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 22 DVTQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp CTTCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CcCCcCccccCCCCeeeeeecCccccC
Confidence 345789999999988999988888885
No 186
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=20.43 E-value=22 Score=27.36 Aligned_cols=28 Identities=32% Similarity=0.690 Sum_probs=22.6
Q ss_pred cccCCCCCCCCceeeccceeEeccccccccc
Q 011187 405 KCADCGASEPDWASLNLGVLICIQCSGVHRN 435 (491)
Q Consensus 405 ~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr~ 435 (491)
.|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 5888997654 568999999999997764
No 187
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=20.19 E-value=32 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=23.5
Q ss_pred CCCcccCCCCCCCCceeeccceeEecccccccc
Q 011187 402 GNNKCADCGASEPDWASLNLGVLICIQCSGVHR 434 (491)
Q Consensus 402 ~N~~C~dCg~~~p~w~s~n~gv~~C~~CsgiHr 434 (491)
....|.-||.+.. ...|||+.|..|++.-|
T Consensus 28 ~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 28 PPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp --CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 4568999998653 56899999999998765
Done!