Query 011188
Match_columns 491
No_of_seqs 331 out of 3284
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 22:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 4.1E-82 8.9E-87 612.7 39.8 432 41-472 16-482 (519)
2 PTZ00110 helicase; Provisional 100.0 8.3E-80 1.8E-84 629.5 52.8 448 31-478 73-524 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 5.7E-77 1.2E-81 543.3 33.8 430 38-468 164-602 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 2.3E-75 4.9E-80 545.8 36.7 428 38-466 175-603 (731)
5 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-70 3.8E-75 559.6 47.5 426 38-465 72-502 (518)
6 KOG0330 ATP-dependent RNA heli 100.0 1.3E-71 2.8E-76 505.9 31.2 371 82-459 57-430 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3E-71 6.4E-76 520.7 32.7 411 56-468 215-655 (673)
8 KOG0341 DEAD-box protein abstr 100.0 1.3E-71 2.8E-76 505.0 22.6 417 49-468 133-559 (610)
9 KOG0335 ATP-dependent RNA heli 100.0 1.3E-68 2.8E-73 509.6 35.0 410 63-473 49-479 (482)
10 KOG0334 RNA helicase [RNA proc 100.0 8.5E-68 1.8E-72 537.6 33.5 428 38-466 316-748 (997)
11 KOG0328 Predicted ATP-dependen 100.0 1.2E-67 2.6E-72 460.4 29.7 383 75-464 16-399 (400)
12 COG0513 SrmB Superfamily II DN 100.0 3.2E-66 7E-71 524.3 41.6 373 86-462 29-408 (513)
13 PRK10590 ATP-dependent RNA hel 100.0 8.9E-65 1.9E-69 511.8 43.7 365 87-453 2-367 (456)
14 PRK04837 ATP-dependent RNA hel 100.0 1.2E-63 2.6E-68 500.5 42.8 367 85-453 7-377 (423)
15 KOG0338 ATP-dependent RNA heli 100.0 2.1E-65 4.5E-70 479.5 27.2 363 85-451 180-546 (691)
16 PRK04537 ATP-dependent RNA hel 100.0 8.1E-63 1.8E-67 505.8 44.9 366 85-452 8-378 (572)
17 KOG0340 ATP-dependent RNA heli 100.0 3.7E-63 7.9E-68 445.7 28.7 367 85-456 6-379 (442)
18 PRK11776 ATP-dependent RNA hel 100.0 1.2E-61 2.6E-66 491.4 41.5 359 86-452 4-363 (460)
19 KOG0342 ATP-dependent RNA heli 100.0 9.7E-63 2.1E-67 461.2 30.4 362 85-447 81-446 (543)
20 PRK11634 ATP-dependent RNA hel 100.0 1.9E-61 4.1E-66 498.1 41.1 357 85-448 5-362 (629)
21 KOG0343 RNA Helicase [RNA proc 100.0 4.3E-62 9.2E-67 461.2 31.4 357 83-442 66-426 (758)
22 PRK11192 ATP-dependent RNA hel 100.0 4.1E-60 8.8E-65 477.3 43.1 363 87-452 2-366 (434)
23 KOG0345 ATP-dependent RNA heli 100.0 2.2E-60 4.7E-65 442.4 34.3 357 86-443 4-369 (567)
24 KOG0326 ATP-dependent RNA heli 100.0 2.1E-62 4.6E-67 434.5 19.1 369 85-461 84-452 (459)
25 PRK01297 ATP-dependent RNA hel 100.0 4.7E-59 1E-63 473.4 43.6 378 84-463 85-469 (475)
26 KOG0346 RNA helicase [RNA proc 100.0 2.1E-59 4.5E-64 432.1 27.6 368 86-453 19-425 (569)
27 PTZ00424 helicase 45; Provisio 100.0 1.1E-57 2.5E-62 456.4 40.5 368 85-459 27-395 (401)
28 KOG0348 ATP-dependent RNA heli 100.0 3.3E-58 7.1E-63 433.5 30.4 365 85-449 135-565 (708)
29 KOG0332 ATP-dependent RNA heli 100.0 1.3E-55 2.8E-60 399.3 30.4 371 83-463 87-470 (477)
30 KOG0344 ATP-dependent RNA heli 100.0 4.4E-56 9.6E-61 426.2 27.6 396 70-466 116-523 (593)
31 KOG0347 RNA helicase [RNA proc 100.0 1.9E-56 4E-61 422.9 17.8 372 80-454 175-586 (731)
32 KOG0327 Translation initiation 100.0 1.8E-54 3.8E-59 395.4 24.5 370 85-463 25-395 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 1.6E-54 3.5E-59 397.9 20.0 363 85-452 20-382 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 3.8E-52 8.2E-57 437.4 38.2 344 92-450 20-400 (742)
35 PLN03137 ATP-dependent DNA hel 100.0 8.1E-50 1.8E-54 416.7 40.5 342 87-447 436-796 (1195)
36 KOG4284 DEAD box protein [Tran 100.0 1.1E-51 2.4E-56 396.7 22.6 355 78-440 17-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 4.7E-50 1E-54 405.8 35.6 326 103-448 6-343 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-50 2.5E-55 379.9 25.3 351 97-452 148-554 (620)
39 PRK11057 ATP-dependent DNA hel 100.0 6.9E-48 1.5E-52 399.8 37.8 332 94-447 10-352 (607)
40 PRK02362 ski2-like helicase; P 100.0 1.6E-47 3.5E-52 407.0 35.6 336 87-438 2-397 (737)
41 TIGR01389 recQ ATP-dependent D 100.0 5E-47 1.1E-51 394.9 35.2 320 104-446 9-339 (591)
42 PRK13767 ATP-dependent helicas 100.0 1.9E-46 4.2E-51 402.0 38.5 343 93-437 18-397 (876)
43 PRK00254 ski2-like helicase; P 100.0 5.6E-46 1.2E-50 394.2 36.3 339 87-439 2-389 (720)
44 TIGR00580 mfd transcription-re 100.0 2.7E-44 5.9E-49 381.2 40.9 351 93-468 436-805 (926)
45 PRK01172 ski2-like helicase; P 100.0 1.1E-44 2.4E-49 382.8 34.0 331 87-438 2-378 (674)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.6E-44 5.6E-49 370.6 33.5 313 104-436 12-389 (844)
47 COG1201 Lhr Lhr-like helicases 100.0 6.6E-44 1.4E-48 365.6 33.8 338 93-437 8-361 (814)
48 PRK10917 ATP-dependent DNA hel 100.0 5.1E-43 1.1E-47 367.2 39.4 347 95-465 248-616 (681)
49 KOG0329 ATP-dependent RNA heli 100.0 8.7E-46 1.9E-50 319.1 15.1 335 85-460 41-378 (387)
50 PRK10689 transcription-repair 100.0 7.3E-43 1.6E-47 378.0 41.4 352 94-470 586-956 (1147)
51 TIGR00643 recG ATP-dependent D 100.0 1.9E-42 4.1E-47 360.7 38.4 346 97-466 225-594 (630)
52 COG0514 RecQ Superfamily II DN 100.0 9.5E-43 2E-47 344.8 28.4 324 104-449 13-348 (590)
53 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-41 2.6E-46 322.1 33.8 323 106-438 13-481 (542)
54 PRK09751 putative ATP-dependen 100.0 3.5E-41 7.6E-46 366.5 34.2 295 128-425 1-371 (1490)
55 PHA02653 RNA helicase NPH-II; 100.0 7.9E-41 1.7E-45 343.3 33.3 310 111-440 167-516 (675)
56 PHA02558 uvsW UvsW helicase; P 100.0 5.4E-41 1.2E-45 341.4 31.9 346 61-430 65-444 (501)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.7E-40 1.7E-44 343.9 34.3 306 111-441 5-339 (819)
58 PRK12898 secA preprotein trans 100.0 2E-39 4.2E-44 327.7 33.0 316 108-440 103-588 (656)
59 COG1204 Superfamily II helicas 100.0 3.9E-40 8.5E-45 342.6 28.3 335 91-437 14-407 (766)
60 COG1202 Superfamily II helicas 100.0 2.6E-40 5.6E-45 315.2 24.1 338 86-438 194-553 (830)
61 PRK09401 reverse gyrase; Revie 100.0 3.3E-39 7.2E-44 350.4 35.7 303 99-425 71-431 (1176)
62 PRK11664 ATP-dependent RNA hel 100.0 3.5E-39 7.6E-44 339.8 31.8 306 112-440 9-341 (812)
63 PRK14701 reverse gyrase; Provi 100.0 4.5E-39 9.8E-44 356.1 32.9 329 96-446 67-464 (1638)
64 TIGR01587 cas3_core CRISPR-ass 100.0 4.3E-39 9.3E-44 317.0 28.2 300 125-439 1-337 (358)
65 PRK09200 preprotein translocas 100.0 5.3E-38 1.2E-42 324.0 30.4 319 105-440 76-543 (790)
66 PRK13766 Hef nuclease; Provisi 100.0 6.4E-37 1.4E-41 329.9 38.7 324 106-439 13-480 (773)
67 TIGR03714 secA2 accessory Sec 100.0 1E-37 2.2E-42 318.8 30.7 321 107-441 67-540 (762)
68 KOG0354 DEAD-box like helicase 100.0 2.4E-37 5.1E-42 309.8 30.5 334 93-437 47-528 (746)
69 TIGR00603 rad25 DNA repair hel 100.0 3.7E-37 8E-42 314.7 30.6 323 107-455 254-626 (732)
70 TIGR00963 secA preprotein tran 100.0 2.7E-36 5.9E-41 306.3 32.3 317 108-441 56-520 (745)
71 TIGR01054 rgy reverse gyrase. 100.0 3.3E-36 7.2E-41 327.5 32.1 292 96-410 66-409 (1171)
72 KOG0952 DNA/RNA helicase MER3/ 100.0 1.4E-36 3.1E-41 307.5 25.3 340 104-449 106-502 (1230)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-35 2.9E-40 288.9 30.7 291 112-423 1-357 (357)
74 KOG0349 Putative DEAD-box RNA 100.0 2.3E-37 5E-42 285.6 16.2 301 160-462 287-671 (725)
75 COG1205 Distinct helicase fami 100.0 2E-35 4.4E-40 311.8 33.1 334 93-436 55-420 (851)
76 KOG0351 ATP-dependent DNA heli 100.0 6E-36 1.3E-40 313.3 27.7 333 100-449 256-603 (941)
77 PRK11131 ATP-dependent RNA hel 100.0 5.6E-35 1.2E-39 312.8 30.2 303 110-441 76-414 (1294)
78 KOG0352 ATP-dependent DNA heli 100.0 1.6E-35 3.5E-40 273.0 20.5 332 97-446 7-370 (641)
79 KOG0353 ATP-dependent DNA heli 100.0 3.5E-34 7.5E-39 260.7 23.5 333 89-439 74-468 (695)
80 COG1200 RecG RecG-like helicas 100.0 1.9E-32 4.2E-37 270.7 34.6 341 93-456 247-609 (677)
81 PRK04914 ATP-dependent helicas 100.0 5.9E-33 1.3E-37 293.6 32.0 333 108-452 152-617 (956)
82 COG1061 SSL2 DNA or RNA helica 100.0 3.5E-33 7.6E-38 278.5 28.2 294 107-424 35-375 (442)
83 PRK05580 primosome assembly pr 100.0 3.2E-31 6.8E-36 277.1 38.8 312 107-439 143-550 (679)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.1E-32 1.5E-36 290.2 30.7 304 113-441 72-407 (1283)
85 KOG0951 RNA helicase BRR2, DEA 100.0 2.2E-32 4.8E-37 280.5 23.6 348 92-448 295-712 (1674)
86 PRK09694 helicase Cas3; Provis 100.0 2.2E-30 4.8E-35 272.5 35.5 353 106-468 284-727 (878)
87 PRK13104 secA preprotein trans 100.0 5.6E-31 1.2E-35 271.3 30.2 319 108-441 80-590 (896)
88 COG1197 Mfd Transcription-repa 100.0 2.2E-30 4.7E-35 269.9 34.5 364 91-478 577-959 (1139)
89 cd00268 DEADc DEAD-box helicas 100.0 6.8E-31 1.5E-35 237.7 24.2 202 88-292 1-202 (203)
90 KOG0947 Cytoplasmic exosomal R 100.0 3.7E-31 8.1E-36 265.5 23.3 309 107-437 296-722 (1248)
91 PRK12904 preprotein translocas 100.0 3E-30 6.4E-35 265.8 28.6 317 108-441 81-576 (830)
92 TIGR00595 priA primosomal prot 100.0 1.4E-29 3.1E-34 255.5 30.7 291 127-438 1-381 (505)
93 PRK12899 secA preprotein trans 100.0 3.7E-29 8E-34 257.3 31.7 148 89-246 65-228 (970)
94 KOG0948 Nuclear exosomal RNA h 100.0 2E-31 4.3E-36 261.3 13.9 310 106-438 127-539 (1041)
95 PRK12906 secA preprotein trans 100.0 2.3E-29 5E-34 258.2 26.4 316 108-440 80-555 (796)
96 PLN03142 Probable chromatin-re 100.0 7.6E-29 1.7E-33 263.3 30.3 315 108-435 169-594 (1033)
97 COG4581 Superfamily II RNA hel 100.0 3.9E-29 8.6E-34 260.5 26.3 312 107-437 118-536 (1041)
98 COG4098 comFA Superfamily II D 100.0 2.2E-27 4.7E-32 214.2 30.5 308 108-443 97-421 (441)
99 PRK11448 hsdR type I restricti 100.0 1.8E-28 4E-33 265.3 27.6 308 107-426 412-801 (1123)
100 PRK13107 preprotein translocas 100.0 5.8E-28 1.2E-32 248.3 26.2 317 109-440 81-593 (908)
101 KOG0950 DNA polymerase theta/e 100.0 9.1E-28 2E-32 242.9 25.4 351 86-449 201-622 (1008)
102 COG1643 HrpA HrpA-like helicas 100.0 1.5E-27 3.3E-32 247.4 23.3 310 109-440 51-389 (845)
103 KOG0922 DEAH-box RNA helicase 100.0 7.8E-27 1.7E-31 228.8 22.7 306 108-440 51-392 (674)
104 KOG0385 Chromatin remodeling c 99.9 5.4E-26 1.2E-30 224.2 25.4 318 108-438 167-599 (971)
105 PF00270 DEAD: DEAD/DEAH box h 99.9 1.7E-26 3.6E-31 202.7 18.0 165 110-280 1-168 (169)
106 KOG0923 mRNA splicing factor A 99.9 8.5E-26 1.8E-30 219.4 20.4 308 105-437 262-605 (902)
107 COG1203 CRISPR-associated heli 99.9 5.1E-25 1.1E-29 232.8 25.6 323 108-439 195-551 (733)
108 KOG0387 Transcription-coupled 99.9 7.7E-24 1.7E-28 210.1 26.8 333 108-453 205-676 (923)
109 KOG0924 mRNA splicing factor A 99.9 2.3E-24 5.1E-29 209.8 21.1 307 108-438 356-697 (1042)
110 KOG0920 ATP-dependent RNA heli 99.9 8.1E-24 1.8E-28 218.8 26.3 316 108-439 173-545 (924)
111 KOG0384 Chromodomain-helicase 99.9 7.9E-25 1.7E-29 225.9 17.4 381 38-439 304-812 (1373)
112 PRK12900 secA preprotein trans 99.9 6.5E-24 1.4E-28 219.4 24.0 142 312-455 578-732 (1025)
113 COG1198 PriA Primosomal protei 99.9 6.7E-23 1.5E-27 209.9 30.2 315 107-441 197-606 (730)
114 KOG1123 RNA polymerase II tran 99.9 5.4E-24 1.2E-28 200.8 16.4 310 106-441 300-656 (776)
115 TIGR00631 uvrb excinuclease AB 99.9 4.1E-22 8.9E-27 206.2 31.8 134 315-449 425-564 (655)
116 COG1110 Reverse gyrase [DNA re 99.9 2.8E-22 6.1E-27 204.4 29.4 288 98-410 72-417 (1187)
117 COG0556 UvrB Helicase subunit 99.9 2.7E-22 5.8E-27 191.5 26.6 169 264-441 386-560 (663)
118 PRK12326 preprotein translocas 99.9 4.4E-22 9.5E-27 200.5 28.3 315 108-440 78-549 (764)
119 TIGR00348 hsdR type I site-spe 99.9 4.1E-22 8.9E-27 208.6 28.9 301 108-425 238-634 (667)
120 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-21 2.8E-26 211.3 33.5 346 94-452 232-830 (850)
121 KOG0926 DEAH-box RNA helicase 99.9 5.9E-23 1.3E-27 203.4 20.9 300 114-438 262-704 (1172)
122 COG4096 HsdR Type I site-speci 99.9 8.6E-23 1.9E-27 205.1 21.6 296 107-425 164-525 (875)
123 KOG0390 DNA repair protein, SN 99.9 1.2E-21 2.6E-26 199.5 28.0 322 108-436 238-703 (776)
124 PRK13103 secA preprotein trans 99.9 1.2E-21 2.5E-26 202.2 25.5 316 109-440 81-593 (913)
125 KOG0392 SNF2 family DNA-depend 99.9 9.7E-22 2.1E-26 202.6 24.7 323 108-438 975-1454(1549)
126 KOG0389 SNF2 family DNA-depend 99.9 6.8E-22 1.5E-26 196.2 22.4 319 108-438 399-888 (941)
127 KOG0925 mRNA splicing factor A 99.9 3.4E-22 7.4E-27 188.2 18.5 322 85-438 24-387 (699)
128 PRK05298 excinuclease ABC subu 99.9 1.2E-20 2.7E-25 196.8 31.4 146 316-462 430-590 (652)
129 PRK12903 secA preprotein trans 99.9 3.5E-20 7.7E-25 189.3 25.5 315 108-440 78-541 (925)
130 smart00487 DEXDc DEAD-like hel 99.9 2.4E-20 5.2E-25 167.9 21.7 186 104-295 4-191 (201)
131 KOG0949 Predicted helicase, DE 99.9 1.8E-21 3.9E-26 196.7 15.4 159 108-276 511-673 (1330)
132 PRK07246 bifunctional ATP-depe 99.9 6E-19 1.3E-23 188.0 31.2 326 108-451 245-798 (820)
133 KOG1000 Chromatin remodeling p 99.8 5.4E-20 1.2E-24 173.8 17.7 313 107-436 197-599 (689)
134 COG4889 Predicted helicase [Ge 99.8 1.9E-20 4.2E-25 187.2 15.2 358 86-455 140-618 (1518)
135 CHL00122 secA preprotein trans 99.8 5.4E-19 1.2E-23 181.8 24.4 273 108-398 76-491 (870)
136 KOG0386 Chromatin remodeling c 99.8 8.6E-20 1.9E-24 185.6 14.1 317 108-443 394-841 (1157)
137 PRK12902 secA preprotein trans 99.8 8.4E-18 1.8E-22 172.8 28.1 275 108-398 83-506 (939)
138 PRK08074 bifunctional ATP-depe 99.8 4.2E-17 9E-22 177.1 32.5 134 318-451 737-908 (928)
139 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.2E-16 2.6E-21 163.0 33.2 120 330-451 469-630 (636)
140 KOG0391 SNF2 family DNA-depend 99.8 4.7E-18 1E-22 174.2 22.4 122 315-436 1259-1383(1958)
141 cd00079 HELICc Helicase superf 99.8 7.7E-19 1.7E-23 146.9 14.1 119 316-434 12-131 (131)
142 KOG4150 Predicted ATP-dependen 99.8 3.9E-18 8.5E-23 163.7 17.9 327 100-435 278-637 (1034)
143 KOG0388 SNF2 family DNA-depend 99.8 2.6E-18 5.7E-23 168.5 15.5 126 313-438 1025-1154(1185)
144 PF00271 Helicase_C: Helicase 99.8 2E-18 4.3E-23 130.1 9.1 78 349-426 1-78 (78)
145 KOG0953 Mitochondrial RNA heli 99.8 8.2E-17 1.8E-21 154.7 19.9 266 125-438 193-477 (700)
146 cd00046 DEXDc DEAD-like helica 99.7 7.1E-17 1.5E-21 136.6 16.3 144 124-274 1-144 (144)
147 PRK12901 secA preprotein trans 99.7 1.5E-16 3.1E-21 165.4 19.9 127 312-440 608-743 (1112)
148 KOG1002 Nucleotide excision re 99.7 1.3E-15 2.8E-20 144.3 23.2 141 315-457 619-766 (791)
149 PF04851 ResIII: Type III rest 99.7 9.7E-17 2.1E-21 142.6 14.6 152 108-275 3-183 (184)
150 KOG0951 RNA helicase BRR2, DEA 99.7 5.1E-16 1.1E-20 161.3 20.5 312 108-447 1143-1503(1674)
151 KOG4439 RNA polymerase II tran 99.7 6.7E-16 1.5E-20 152.1 20.3 121 314-434 727-852 (901)
152 PRK11747 dinG ATP-dependent DN 99.7 4.2E-14 9.2E-19 149.1 32.1 129 318-450 520-688 (697)
153 COG1199 DinG Rad3-related DNA 99.7 3.1E-14 6.7E-19 151.3 29.8 133 317-452 463-633 (654)
154 TIGR00604 rad3 DNA repair heli 99.6 1.3E-13 2.8E-18 146.6 29.5 142 317-468 506-695 (705)
155 PRK14873 primosome assembly pr 99.6 6.7E-14 1.5E-18 145.0 25.7 279 128-438 165-539 (665)
156 TIGR02562 cas3_yersinia CRISPR 99.6 7.1E-14 1.5E-18 146.4 25.4 312 107-428 407-882 (1110)
157 smart00490 HELICc helicase sup 99.6 1.1E-15 2.4E-20 116.2 8.9 81 346-426 2-82 (82)
158 COG0553 HepA Superfamily II DN 99.6 4.5E-14 9.8E-19 155.9 23.2 337 107-452 337-834 (866)
159 PF02399 Herpes_ori_bp: Origin 99.6 2E-13 4.4E-18 139.5 22.1 289 125-438 51-388 (824)
160 KOG1015 Transcription regulato 99.6 8.5E-14 1.9E-18 141.1 17.7 124 315-438 1125-1275(1567)
161 PF06862 DUF1253: Protein of u 99.6 5.3E-12 1.2E-16 123.0 27.8 290 159-449 37-426 (442)
162 COG0653 SecA Preprotein transl 99.5 6.7E-13 1.5E-17 136.6 19.5 317 108-439 78-546 (822)
163 PF00176 SNF2_N: SNF2 family N 99.4 2.6E-12 5.7E-17 123.5 14.5 154 112-274 1-172 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.4 2.2E-12 4.9E-17 104.8 8.7 136 123-279 4-141 (148)
165 COG0610 Type I site-specific r 99.3 1.6E-10 3.4E-15 125.4 23.5 286 124-425 274-636 (962)
166 KOG2340 Uncharacterized conser 99.3 9.4E-11 2E-15 112.8 17.4 344 106-450 214-680 (698)
167 KOG0921 Dosage compensation co 99.3 5.8E-11 1.3E-15 120.5 14.2 309 113-437 383-773 (1282)
168 smart00489 DEXDc3 DEAD-like he 99.2 1.4E-10 3.1E-15 109.5 14.2 73 108-182 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.2 1.4E-10 3.1E-15 109.5 14.2 73 108-182 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 99.1 2E-09 4.4E-14 98.9 14.1 128 107-246 76-210 (266)
171 KOG1016 Predicted DNA helicase 99.0 4.7E-08 1E-12 98.4 20.9 117 331-447 719-856 (1387)
172 KOG1001 Helicase-like transcri 98.9 2.3E-08 4.9E-13 103.6 13.3 118 316-433 522-643 (674)
173 TIGR00596 rad1 DNA repair prot 98.8 1.4E-07 2.9E-12 100.2 17.3 66 209-274 7-72 (814)
174 KOG0952 DNA/RNA helicase MER3/ 98.8 4E-09 8.7E-14 109.5 5.3 260 108-383 927-1207(1230)
175 COG3587 Restriction endonuclea 98.8 1.6E-06 3.4E-11 89.1 21.7 73 380-452 482-567 (985)
176 PRK15483 type III restriction- 98.7 1.6E-07 3.4E-12 99.8 14.7 73 381-453 501-583 (986)
177 PF13872 AAA_34: P-loop contai 98.7 6.1E-07 1.3E-11 82.8 14.5 170 89-277 24-223 (303)
178 PF13604 AAA_30: AAA domain; P 98.6 2.2E-07 4.8E-12 82.8 10.0 123 108-273 1-130 (196)
179 PF13086 AAA_11: AAA domain; P 98.6 3.7E-07 7.9E-12 84.2 11.4 73 108-181 1-75 (236)
180 PF02562 PhoH: PhoH-like prote 98.6 3.9E-07 8.4E-12 80.5 10.7 146 107-273 3-155 (205)
181 PF13307 Helicase_C_2: Helicas 98.6 2.3E-07 4.9E-12 80.5 8.3 106 331-438 9-150 (167)
182 KOG1802 RNA helicase nonsense 98.5 3E-06 6.4E-11 84.6 14.8 84 100-194 402-485 (935)
183 PF12340 DUF3638: Protein of u 98.4 3.4E-06 7.3E-11 75.2 12.5 128 87-224 4-145 (229)
184 TIGR00376 DNA helicase, putati 98.3 9.3E-05 2E-09 77.8 22.2 68 107-182 156-224 (637)
185 PRK10536 hypothetical protein; 98.3 1.6E-05 3.4E-10 72.4 12.7 143 104-271 55-210 (262)
186 PF09848 DUF2075: Uncharacteri 98.2 8.6E-05 1.9E-09 72.8 16.8 108 125-260 3-117 (352)
187 TIGR01448 recD_rel helicase, p 98.2 2.7E-05 5.9E-10 83.0 14.2 127 106-273 321-452 (720)
188 TIGR01447 recD exodeoxyribonuc 98.2 2.7E-05 5.9E-10 80.6 13.6 143 110-273 147-295 (586)
189 PRK10875 recD exonuclease V su 98.2 2.1E-05 4.6E-10 81.6 12.8 143 109-273 153-301 (615)
190 KOG1803 DNA helicase [Replicat 98.1 1.4E-05 3.1E-10 79.4 9.6 65 108-180 185-250 (649)
191 PF13245 AAA_19: Part of AAA d 98.0 4.3E-05 9.4E-10 56.3 7.7 60 116-179 2-62 (76)
192 KOG1132 Helicase of the DEAD s 98.0 5.1E-05 1.1E-09 78.6 10.8 79 107-185 20-136 (945)
193 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00023 5.1E-09 76.3 14.8 122 107-271 351-474 (744)
194 KOG1805 DNA replication helica 97.9 9.1E-05 2E-09 77.5 10.8 146 82-247 647-810 (1100)
195 PRK13889 conjugal transfer rel 97.8 0.00033 7.2E-09 76.3 14.7 124 107-273 345-470 (988)
196 KOG1513 Nuclear helicase MOP-3 97.8 0.00015 3.2E-09 74.1 10.9 82 374-455 850-943 (1300)
197 PRK04296 thymidine kinase; Pro 97.8 7.5E-05 1.6E-09 66.3 7.6 109 124-273 3-114 (190)
198 smart00492 HELICc3 helicase su 97.8 0.00018 4E-09 60.0 9.3 76 361-436 27-136 (141)
199 smart00491 HELICc2 helicase su 97.7 0.00018 3.9E-09 60.3 8.3 93 344-436 4-137 (142)
200 PRK13826 Dtr system oriT relax 97.7 0.0011 2.4E-08 72.8 15.5 124 107-273 380-505 (1102)
201 TIGR02760 TraI_TIGR conjugativ 97.6 0.0043 9.3E-08 73.3 21.0 237 108-381 429-686 (1960)
202 COG1875 NYN ribonuclease and A 97.6 0.00036 7.9E-09 65.7 9.8 144 104-271 224-385 (436)
203 KOG0383 Predicted helicase [Ge 97.6 5.3E-06 1.1E-10 85.4 -2.6 79 315-394 614-696 (696)
204 PRK12723 flagellar biosynthesi 97.6 0.0017 3.8E-08 63.7 14.7 168 124-340 175-348 (388)
205 PF13871 Helicase_C_4: Helicas 97.6 0.00035 7.6E-09 64.6 8.9 83 372-454 52-146 (278)
206 PRK06526 transposase; Provisio 97.5 0.00031 6.8E-09 65.1 8.0 110 118-276 93-203 (254)
207 COG3421 Uncharacterized protei 97.5 0.0013 2.8E-08 65.7 11.7 150 128-285 2-175 (812)
208 PRK08181 transposase; Validate 97.5 0.0025 5.4E-08 59.5 12.9 119 109-276 88-211 (269)
209 COG1419 FlhF Flagellar GTP-bin 97.4 0.0031 6.8E-08 61.0 13.4 172 123-342 203-376 (407)
210 PF00580 UvrD-helicase: UvrD/R 97.4 0.00046 9.9E-09 66.6 7.9 123 109-243 1-125 (315)
211 PRK14974 cell division protein 97.4 0.0021 4.5E-08 61.9 11.9 130 125-286 142-276 (336)
212 PF13401 AAA_22: AAA domain; P 97.4 0.00067 1.5E-08 56.1 7.3 20 123-142 4-23 (131)
213 PRK11889 flhF flagellar biosyn 97.3 0.0052 1.1E-07 59.7 13.7 166 124-340 242-413 (436)
214 PRK14722 flhF flagellar biosyn 97.3 0.0018 3.9E-08 63.0 10.6 132 123-286 137-270 (374)
215 cd00009 AAA The AAA+ (ATPases 97.3 0.0027 5.8E-08 53.3 10.7 25 123-148 19-43 (151)
216 KOG0989 Replication factor C, 97.3 0.0014 3.1E-08 60.4 8.7 60 229-289 125-187 (346)
217 PF00448 SRP54: SRP54-type pro 97.2 0.00075 1.6E-08 60.0 6.0 54 232-285 82-136 (196)
218 KOG1131 RNA polymerase II tran 97.2 0.0036 7.8E-08 61.5 10.8 95 333-428 532-671 (755)
219 PRK07952 DNA replication prote 97.1 0.011 2.3E-07 54.4 13.2 106 124-276 100-207 (244)
220 smart00382 AAA ATPases associa 97.1 0.0014 2.9E-08 54.6 6.4 40 123-170 2-41 (148)
221 COG2805 PilT Tfp pilus assembl 97.1 0.0019 4.1E-08 59.5 7.5 53 79-151 99-152 (353)
222 KOG1133 Helicase of the DEAD s 97.1 0.047 1E-06 55.9 17.8 210 234-470 527-802 (821)
223 PRK06921 hypothetical protein; 97.1 0.015 3.2E-07 54.4 13.6 45 122-174 116-160 (266)
224 KOG0298 DEAD box-containing he 97.0 0.0021 4.6E-08 69.5 8.4 149 123-276 374-552 (1394)
225 PRK05703 flhF flagellar biosyn 97.0 0.036 7.8E-07 55.5 16.6 129 123-286 221-355 (424)
226 PF05970 PIF1: PIF1-like helic 97.0 0.003 6.5E-08 62.2 8.4 58 108-173 1-64 (364)
227 PRK08116 hypothetical protein; 96.9 0.019 4.1E-07 53.9 12.5 109 124-278 115-225 (268)
228 PRK05707 DNA polymerase III su 96.9 0.0068 1.5E-07 58.5 9.7 42 108-150 3-48 (328)
229 cd01124 KaiC KaiC is a circadi 96.8 0.006 1.3E-07 53.9 8.4 49 126-183 2-50 (187)
230 PRK12377 putative replication 96.8 0.009 2E-07 55.0 9.6 102 124-273 102-205 (248)
231 PHA02533 17 large terminase pr 96.8 0.013 2.8E-07 60.3 11.4 149 107-274 58-210 (534)
232 PRK14712 conjugal transfer nic 96.7 0.016 3.5E-07 66.1 12.6 62 108-175 835-900 (1623)
233 PRK05642 DNA replication initi 96.7 0.0073 1.6E-07 55.5 8.4 44 233-276 97-141 (234)
234 TIGR01075 uvrD DNA helicase II 96.7 0.0097 2.1E-07 64.3 10.5 109 107-244 3-114 (715)
235 PRK13709 conjugal transfer nic 96.7 0.025 5.5E-07 65.5 13.8 127 107-273 966-1099(1747)
236 PRK11773 uvrD DNA-dependent he 96.7 0.0091 2E-07 64.5 10.0 108 107-243 8-118 (721)
237 cd01120 RecA-like_NTPases RecA 96.7 0.017 3.6E-07 49.5 9.9 37 126-170 2-38 (165)
238 PF05127 Helicase_RecD: Helica 96.6 0.0015 3.1E-08 56.5 2.9 123 127-274 1-123 (177)
239 PRK08727 hypothetical protein; 96.6 0.016 3.5E-07 53.2 10.0 47 232-278 92-140 (233)
240 PRK12727 flagellar biosynthesi 96.6 0.23 4.9E-06 50.6 18.5 129 122-285 349-481 (559)
241 PF14617 CMS1: U3-containing 9 96.6 0.0059 1.3E-07 55.9 6.8 87 157-244 124-212 (252)
242 PRK06835 DNA replication prote 96.6 0.016 3.5E-07 55.8 10.1 110 122-278 182-293 (329)
243 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.018 3.9E-07 52.6 10.0 21 122-142 37-57 (226)
244 PRK08769 DNA polymerase III su 96.6 0.015 3.2E-07 55.7 9.5 143 107-273 3-152 (319)
245 PRK11054 helD DNA helicase IV; 96.6 0.011 2.5E-07 62.7 9.6 78 107-190 195-272 (684)
246 PRK14723 flhF flagellar biosyn 96.5 0.036 7.7E-07 58.9 12.9 131 124-286 186-318 (767)
247 KOG0701 dsRNA-specific nucleas 96.5 0.0031 6.7E-08 71.0 5.3 93 333-425 294-398 (1606)
248 PRK10919 ATP-dependent DNA hel 96.5 0.013 2.9E-07 62.5 9.9 70 108-183 2-71 (672)
249 PRK06893 DNA replication initi 96.5 0.0092 2E-07 54.7 7.7 45 232-276 90-136 (229)
250 PRK06731 flhF flagellar biosyn 96.5 0.1 2.2E-06 48.7 14.6 168 122-340 74-247 (270)
251 PRK08084 DNA replication initi 96.5 0.012 2.7E-07 54.0 8.4 37 123-167 45-81 (235)
252 COG3973 Superfamily I DNA and 96.5 0.028 6.1E-07 56.8 11.1 93 91-185 187-286 (747)
253 COG1484 DnaC DNA replication p 96.4 0.028 6.1E-07 52.2 10.3 52 121-181 103-154 (254)
254 PRK10917 ATP-dependent DNA hel 96.4 0.017 3.8E-07 61.8 9.9 86 320-405 299-389 (681)
255 PRK09183 transposase/IS protei 96.4 0.057 1.2E-06 50.4 12.2 46 120-174 99-144 (259)
256 COG2256 MGS1 ATPase related to 96.4 0.0097 2.1E-07 57.2 6.8 36 235-275 106-141 (436)
257 PRK12402 replication factor C 96.3 0.032 7E-07 54.4 10.9 39 232-271 124-162 (337)
258 PRK08903 DnaA regulatory inact 96.3 0.022 4.8E-07 52.1 9.1 43 233-276 90-133 (227)
259 COG1444 Predicted P-loop ATPas 96.3 0.027 5.9E-07 59.2 10.5 148 101-274 207-356 (758)
260 PRK00149 dnaA chromosomal repl 96.3 0.035 7.7E-07 56.4 11.3 109 124-279 149-259 (450)
261 PRK07764 DNA polymerase III su 96.3 0.018 3.8E-07 62.4 9.4 39 232-271 119-157 (824)
262 PRK11331 5-methylcytosine-spec 96.3 0.014 3E-07 58.0 7.9 34 108-141 179-212 (459)
263 PRK00771 signal recognition pa 96.3 0.055 1.2E-06 54.2 12.2 52 234-285 176-228 (437)
264 PRK14956 DNA polymerase III su 96.3 0.016 3.4E-07 58.2 8.1 24 126-150 43-66 (484)
265 PRK07003 DNA polymerase III su 96.2 0.038 8.3E-07 58.2 11.0 39 232-271 118-156 (830)
266 PF05621 TniB: Bacterial TniB 96.2 0.018 3.9E-07 53.9 7.8 53 124-180 62-117 (302)
267 PTZ00293 thymidine kinase; Pro 96.2 0.041 8.9E-07 49.0 9.7 39 123-169 4-42 (211)
268 PF13177 DNA_pol3_delta2: DNA 96.2 0.038 8.1E-07 47.6 9.3 42 232-274 101-142 (162)
269 PHA03333 putative ATPase subun 96.2 0.12 2.5E-06 53.8 14.1 70 108-184 169-241 (752)
270 TIGR01074 rep ATP-dependent DN 96.2 0.028 6.2E-07 60.3 10.4 69 109-183 2-70 (664)
271 TIGR02760 TraI_TIGR conjugativ 96.2 0.041 8.9E-07 65.3 12.2 62 107-175 1018-1084(1960)
272 TIGR01425 SRP54_euk signal rec 96.2 0.063 1.4E-06 53.4 11.7 54 233-286 182-236 (429)
273 PRK12422 chromosomal replicati 96.2 0.035 7.6E-07 56.0 10.1 109 124-281 142-252 (445)
274 PRK07994 DNA polymerase III su 96.2 0.023 5E-07 59.5 9.0 38 232-270 118-155 (647)
275 PRK14958 DNA polymerase III su 96.2 0.029 6.3E-07 57.6 9.6 39 232-271 118-156 (509)
276 PRK06645 DNA polymerase III su 96.1 0.026 5.7E-07 57.6 9.0 25 125-150 45-69 (507)
277 PF03354 Terminase_1: Phage Te 96.1 0.027 5.8E-07 57.8 8.9 149 111-271 1-160 (477)
278 PRK12726 flagellar biosynthesi 96.1 0.13 2.9E-06 49.9 13.0 129 123-285 206-339 (407)
279 PRK14086 dnaA chromosomal repl 96.1 0.026 5.6E-07 58.4 8.6 107 125-278 316-424 (617)
280 TIGR01547 phage_term_2 phage t 96.1 0.025 5.4E-07 56.6 8.6 136 125-276 3-142 (396)
281 PRK14088 dnaA chromosomal repl 96.0 0.11 2.3E-06 52.6 12.9 112 125-282 132-245 (440)
282 PLN03025 replication factor C 96.0 0.085 1.8E-06 51.0 11.8 37 233-270 99-135 (319)
283 PF05496 RuvB_N: Holliday junc 96.0 0.034 7.3E-07 49.8 8.0 18 125-142 52-69 (233)
284 PRK14087 dnaA chromosomal repl 96.0 0.036 7.9E-07 56.0 9.4 109 125-278 143-253 (450)
285 TIGR00362 DnaA chromosomal rep 96.0 0.078 1.7E-06 53.2 11.6 43 125-174 138-180 (405)
286 TIGR00643 recG ATP-dependent D 96.0 0.032 7E-07 59.2 9.2 86 320-405 273-363 (630)
287 PRK06964 DNA polymerase III su 95.9 0.052 1.1E-06 52.5 9.7 41 109-150 2-47 (342)
288 TIGR02881 spore_V_K stage V sp 95.9 0.041 8.9E-07 51.5 8.8 19 124-142 43-61 (261)
289 PHA02544 44 clamp loader, smal 95.9 0.039 8.4E-07 53.3 8.9 39 233-271 100-138 (316)
290 PRK14960 DNA polymerase III su 95.9 0.048 1E-06 56.7 9.7 39 232-271 117-155 (702)
291 PRK14964 DNA polymerase III su 95.9 0.047 1E-06 55.4 9.5 40 231-271 114-153 (491)
292 PRK08533 flagellar accessory p 95.9 0.084 1.8E-06 48.3 10.4 54 121-183 22-75 (230)
293 PF00308 Bac_DnaA: Bacterial d 95.9 0.038 8.1E-07 50.2 8.0 107 125-278 36-144 (219)
294 PTZ00112 origin recognition co 95.8 0.11 2.4E-06 55.6 12.1 23 126-149 784-806 (1164)
295 COG1435 Tdk Thymidine kinase [ 95.8 0.098 2.1E-06 45.5 9.9 89 125-245 6-94 (201)
296 PRK14961 DNA polymerase III su 95.8 0.055 1.2E-06 53.3 9.6 39 232-271 118-156 (363)
297 PRK14949 DNA polymerase III su 95.8 0.033 7.1E-07 59.8 8.3 38 232-270 118-155 (944)
298 PRK05986 cob(I)alamin adenolsy 95.8 0.054 1.2E-06 47.4 8.2 145 122-284 21-168 (191)
299 PF00004 AAA: ATPase family as 95.8 0.099 2.1E-06 42.8 9.7 17 126-142 1-17 (132)
300 COG0470 HolB ATPase involved i 95.7 0.058 1.3E-06 52.2 9.4 40 232-272 108-147 (325)
301 PRK14721 flhF flagellar biosyn 95.7 0.2 4.3E-06 49.9 13.0 172 123-342 191-364 (420)
302 PRK12323 DNA polymerase III su 95.7 0.033 7.2E-07 57.7 7.7 39 232-271 123-161 (700)
303 PRK00411 cdc6 cell division co 95.7 0.1 2.3E-06 52.1 11.4 26 124-150 56-81 (394)
304 PF13173 AAA_14: AAA domain 95.7 0.089 1.9E-06 43.2 9.1 38 233-273 61-98 (128)
305 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.1 2.2E-06 44.3 9.4 53 231-283 93-147 (159)
306 PRK13342 recombination factor 95.7 0.083 1.8E-06 53.1 10.5 18 125-142 38-55 (413)
307 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.059 1.3E-06 49.6 8.7 52 123-183 21-72 (237)
308 PRK05580 primosome assembly pr 95.6 0.081 1.8E-06 56.6 10.7 95 313-408 171-267 (679)
309 TIGR00064 ftsY signal recognit 95.6 0.16 3.6E-06 47.6 11.6 55 232-286 153-214 (272)
310 PRK14965 DNA polymerase III su 95.6 0.056 1.2E-06 56.6 9.1 40 231-271 117-156 (576)
311 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.16 3.5E-06 46.4 11.2 53 122-183 19-71 (229)
312 TIGR00595 priA primosomal prot 95.6 0.093 2E-06 54.0 10.4 93 314-407 7-101 (505)
313 PRK06995 flhF flagellar biosyn 95.5 0.13 2.9E-06 51.9 11.2 19 124-142 257-275 (484)
314 TIGR02785 addA_Gpos recombinat 95.5 0.056 1.2E-06 61.9 9.5 124 108-244 1-126 (1232)
315 PRK08939 primosomal protein Dn 95.5 0.17 3.7E-06 48.3 11.5 103 123-274 156-261 (306)
316 PRK14952 DNA polymerase III su 95.5 0.11 2.4E-06 54.1 10.7 40 231-271 116-155 (584)
317 PRK08691 DNA polymerase III su 95.5 0.078 1.7E-06 55.6 9.5 40 231-271 117-156 (709)
318 PRK14969 DNA polymerase III su 95.5 0.067 1.5E-06 55.3 9.1 40 231-271 117-156 (527)
319 TIGR00708 cobA cob(I)alamin ad 95.5 0.13 2.7E-06 44.4 9.3 53 232-284 96-150 (173)
320 PRK13833 conjugal transfer pro 95.5 0.057 1.2E-06 51.8 7.9 65 100-172 122-187 (323)
321 cd01122 GP4d_helicase GP4d_hel 95.4 0.052 1.1E-06 51.1 7.7 41 120-167 27-67 (271)
322 TIGR00580 mfd transcription-re 95.4 0.07 1.5E-06 58.7 9.5 83 323-405 492-579 (926)
323 PRK11823 DNA repair protein Ra 95.4 0.091 2E-06 53.1 9.6 52 123-183 80-131 (446)
324 PRK05973 replicative DNA helic 95.4 0.13 2.8E-06 47.0 9.6 66 108-183 50-115 (237)
325 COG1219 ClpX ATP-dependent pro 95.4 0.026 5.6E-07 52.6 5.1 28 121-150 95-122 (408)
326 COG4962 CpaF Flp pilus assembl 95.4 0.029 6.3E-07 53.1 5.5 61 105-174 154-215 (355)
327 PRK06871 DNA polymerase III su 95.4 0.12 2.6E-06 49.6 9.9 42 231-273 105-146 (325)
328 PRK09111 DNA polymerase III su 95.4 0.093 2E-06 54.9 9.8 40 231-271 130-169 (598)
329 TIGR01073 pcrA ATP-dependent D 95.4 0.086 1.9E-06 57.2 9.9 72 107-184 3-74 (726)
330 PF05876 Terminase_GpA: Phage 95.4 0.034 7.4E-07 57.8 6.5 68 108-182 16-86 (557)
331 PRK12724 flagellar biosynthesi 95.4 0.32 7E-06 48.1 12.8 54 232-285 298-356 (432)
332 PRK14873 primosome assembly pr 95.4 0.15 3.2E-06 54.1 11.2 93 314-407 170-265 (665)
333 CHL00181 cbbX CbbX; Provisiona 95.3 0.13 2.7E-06 48.8 9.7 20 123-142 59-78 (287)
334 PRK08699 DNA polymerase III su 95.3 0.14 3.1E-06 49.3 10.2 41 109-150 2-47 (325)
335 KOG0745 Putative ATP-dependent 95.3 0.025 5.4E-07 54.9 4.8 26 123-150 226-251 (564)
336 KOG0991 Replication factor C, 95.3 0.064 1.4E-06 47.8 6.9 41 232-273 112-152 (333)
337 PRK14959 DNA polymerase III su 95.2 0.11 2.5E-06 54.0 9.8 24 125-149 40-63 (624)
338 KOG2028 ATPase related to the 95.2 0.05 1.1E-06 51.6 6.5 18 125-142 164-181 (554)
339 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.06 1.3E-06 52.6 7.2 28 122-150 133-160 (358)
340 cd01121 Sms Sms (bacterial rad 95.2 0.15 3.2E-06 50.2 9.9 52 123-183 82-133 (372)
341 PRK13341 recombination factor 95.2 0.1 2.2E-06 55.9 9.4 44 233-281 109-152 (725)
342 PHA03368 DNA packaging termina 95.2 0.12 2.7E-06 53.4 9.6 130 124-273 255-389 (738)
343 PRK14957 DNA polymerase III su 95.2 0.15 3.2E-06 52.6 10.3 40 231-271 117-156 (546)
344 PRK10867 signal recognition pa 95.1 0.21 4.7E-06 49.9 11.1 17 126-142 103-119 (433)
345 PRK09112 DNA polymerase III su 95.1 0.2 4.3E-06 48.9 10.7 39 232-271 140-178 (351)
346 TIGR03015 pepcterm_ATPase puta 95.1 0.15 3.3E-06 47.8 9.8 34 108-141 23-61 (269)
347 KOG0741 AAA+-type ATPase [Post 95.1 0.09 1.9E-06 52.4 8.1 58 81-141 211-274 (744)
348 PRK13894 conjugal transfer ATP 95.1 0.073 1.6E-06 51.1 7.4 66 98-171 124-190 (319)
349 PRK06090 DNA polymerase III su 95.1 0.14 3E-06 49.1 9.2 136 108-273 3-147 (319)
350 PRK04195 replication factor C 95.1 0.2 4.3E-06 51.5 11.0 19 123-141 39-57 (482)
351 PRK07993 DNA polymerase III su 95.0 0.13 2.8E-06 49.8 9.1 137 108-273 2-147 (334)
352 PRK07471 DNA polymerase III su 95.0 0.21 4.5E-06 49.1 10.5 135 125-273 43-180 (365)
353 TIGR00959 ffh signal recogniti 95.0 0.26 5.7E-06 49.3 11.2 53 233-285 182-235 (428)
354 PRK14955 DNA polymerase III su 95.0 0.1 2.3E-06 52.0 8.6 25 125-150 40-64 (397)
355 TIGR02782 TrbB_P P-type conjug 95.0 0.11 2.3E-06 49.6 8.2 66 99-172 109-175 (299)
356 PRK05563 DNA polymerase III su 95.0 0.12 2.6E-06 53.9 9.1 24 125-149 40-63 (559)
357 COG1200 RecG RecG-like helicas 95.0 0.15 3.4E-06 52.6 9.6 91 314-404 294-389 (677)
358 PRK14950 DNA polymerase III su 95.0 0.13 2.8E-06 54.0 9.5 24 125-149 40-63 (585)
359 TIGR02525 plasmid_TraJ plasmid 95.0 0.082 1.8E-06 51.8 7.4 43 123-171 149-191 (372)
360 cd00984 DnaB_C DnaB helicase C 94.9 0.088 1.9E-06 48.6 7.3 48 121-175 11-61 (242)
361 PHA00729 NTP-binding motif con 94.9 0.23 5E-06 44.8 9.5 75 211-285 60-139 (226)
362 PRK14951 DNA polymerase III su 94.9 0.089 1.9E-06 55.0 7.8 24 126-150 41-64 (618)
363 PF06745 KaiC: KaiC; InterPro 94.8 0.14 3E-06 46.7 8.4 133 122-273 18-159 (226)
364 TIGR02928 orc1/cdc6 family rep 94.8 0.23 5E-06 49.0 10.5 25 124-149 41-65 (365)
365 PRK00440 rfc replication facto 94.8 0.45 9.8E-06 45.9 12.2 38 233-271 102-139 (319)
366 cd03115 SRP The signal recogni 94.7 1.1 2.4E-05 38.9 13.5 53 233-285 82-135 (173)
367 PRK06067 flagellar accessory p 94.7 0.33 7.2E-06 44.5 10.6 52 123-183 25-76 (234)
368 COG1198 PriA Primosomal protei 94.7 0.13 2.8E-06 54.6 8.6 96 308-404 221-318 (730)
369 PF01695 IstB_IS21: IstB-like 94.7 0.072 1.6E-06 46.5 5.8 49 118-175 42-90 (178)
370 PRK07940 DNA polymerase III su 94.7 0.18 3.9E-06 50.0 9.2 43 231-275 115-157 (394)
371 COG2909 MalT ATP-dependent tra 94.7 0.48 1E-05 50.3 12.4 43 233-275 129-171 (894)
372 PF02572 CobA_CobO_BtuR: ATP:c 94.6 0.44 9.5E-06 41.1 10.2 140 126-283 6-148 (172)
373 PRK05896 DNA polymerase III su 94.6 0.18 3.9E-06 52.3 9.2 25 125-150 40-64 (605)
374 COG1474 CDC6 Cdc6-related prot 94.6 0.43 9.2E-06 46.9 11.4 26 124-150 43-68 (366)
375 COG2804 PulE Type II secretory 94.6 0.06 1.3E-06 53.8 5.4 41 109-150 242-284 (500)
376 PRK14948 DNA polymerase III su 94.5 0.16 3.6E-06 53.4 8.8 26 124-150 39-64 (620)
377 PRK11034 clpA ATP-dependent Cl 94.4 0.34 7.3E-06 52.3 11.1 20 123-142 207-226 (758)
378 TIGR02639 ClpA ATP-dependent C 94.4 0.69 1.5E-05 50.2 13.6 19 124-142 204-222 (731)
379 TIGR02880 cbbX_cfxQ probable R 94.4 0.23 5E-06 47.0 8.9 20 123-142 58-77 (284)
380 COG2109 BtuR ATP:corrinoid ade 94.4 0.57 1.2E-05 40.5 10.2 143 126-285 31-176 (198)
381 COG3972 Superfamily I DNA and 94.3 0.43 9.4E-06 47.3 10.5 134 106-247 160-309 (660)
382 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.53 1.1E-05 43.9 11.1 53 122-182 35-90 (259)
383 PRK14963 DNA polymerase III su 94.3 0.15 3.2E-06 52.4 7.8 23 126-149 39-61 (504)
384 PRK14962 DNA polymerase III su 94.3 0.12 2.6E-06 52.6 7.0 23 126-149 39-61 (472)
385 COG1110 Reverse gyrase [DNA re 94.3 0.14 3.1E-06 55.0 7.6 88 319-407 114-211 (1187)
386 PRK10689 transcription-repair 94.2 0.21 4.6E-06 56.4 9.5 78 328-405 646-728 (1147)
387 PRK04328 hypothetical protein; 94.2 0.37 8.1E-06 44.7 9.8 53 122-183 22-74 (249)
388 TIGR01420 pilT_fam pilus retra 94.2 0.16 3.4E-06 49.6 7.4 42 123-171 122-163 (343)
389 PRK14954 DNA polymerase III su 94.2 0.25 5.3E-06 51.9 9.2 25 125-150 40-64 (620)
390 TIGR00678 holB DNA polymerase 94.1 0.57 1.2E-05 41.3 10.4 39 231-270 94-132 (188)
391 PRK08451 DNA polymerase III su 94.1 0.3 6.5E-06 50.2 9.6 40 231-271 115-154 (535)
392 PRK13900 type IV secretion sys 94.1 0.16 3.5E-06 49.1 7.3 43 120-171 157-199 (332)
393 COG0593 DnaA ATPase involved i 94.1 0.31 6.6E-06 48.0 9.2 47 233-279 175-223 (408)
394 COG0552 FtsY Signal recognitio 94.1 1 2.3E-05 42.7 12.2 131 126-285 142-280 (340)
395 TIGR03600 phage_DnaB phage rep 94.1 0.6 1.3E-05 47.1 11.6 40 120-166 191-230 (421)
396 PRK06620 hypothetical protein; 94.0 0.14 3E-06 46.3 6.2 16 124-139 45-60 (214)
397 KOG0738 AAA+-type ATPase [Post 94.0 1.4 3E-05 42.6 12.8 16 124-139 246-261 (491)
398 KOG1133 Helicase of the DEAD s 93.9 0.084 1.8E-06 54.2 5.0 44 107-150 14-61 (821)
399 PHA03372 DNA packaging termina 93.9 0.7 1.5E-05 47.5 11.4 126 124-273 203-336 (668)
400 COG4626 Phage terminase-like p 93.9 0.35 7.5E-06 49.0 9.2 145 107-272 60-223 (546)
401 TIGR03499 FlhF flagellar biosy 93.9 0.096 2.1E-06 49.6 5.2 19 124-142 195-213 (282)
402 PF06733 DEAD_2: DEAD_2; Inte 93.8 0.04 8.6E-07 48.1 2.4 46 203-248 113-160 (174)
403 PRK13851 type IV secretion sys 93.8 0.099 2.1E-06 50.7 5.2 44 120-172 159-202 (344)
404 PRK04841 transcriptional regul 93.8 0.75 1.6E-05 51.5 13.0 44 233-276 121-164 (903)
405 PRK06904 replicative DNA helic 93.5 1.2 2.6E-05 45.4 12.5 115 123-247 221-348 (472)
406 PHA00012 I assembly protein 93.4 2.4 5.2E-05 40.3 13.2 25 126-150 4-28 (361)
407 PF02456 Adeno_IVa2: Adenoviru 93.4 0.39 8.5E-06 44.8 7.9 39 126-170 90-128 (369)
408 PRK10416 signal recognition pa 93.4 1.9 4.2E-05 41.5 13.2 54 232-285 195-255 (318)
409 PF00265 TK: Thymidine kinase; 93.4 0.11 2.3E-06 45.3 4.2 36 126-169 4-39 (176)
410 TIGR03880 KaiC_arch_3 KaiC dom 93.3 0.63 1.4E-05 42.4 9.4 52 123-183 16-67 (224)
411 KOG0298 DEAD box-containing he 93.3 0.12 2.7E-06 56.5 5.3 97 331-432 1221-1318(1394)
412 PRK13764 ATPase; Provisional 93.3 0.21 4.6E-06 51.9 6.8 42 122-171 256-297 (602)
413 PRK14971 DNA polymerase III su 93.2 0.36 7.7E-06 50.9 8.6 41 231-273 119-159 (614)
414 PRK07399 DNA polymerase III su 93.2 0.61 1.3E-05 44.8 9.5 58 212-272 104-161 (314)
415 PRK07133 DNA polymerase III su 93.2 0.21 4.5E-06 53.0 6.7 23 126-149 43-65 (725)
416 TIGR02868 CydC thiol reductant 93.2 0.18 4E-06 52.5 6.4 20 120-139 358-377 (529)
417 PRK06305 DNA polymerase III su 93.2 0.5 1.1E-05 47.9 9.2 25 125-150 41-65 (451)
418 TIGR02012 tigrfam_recA protein 93.2 0.23 5E-06 47.5 6.4 44 122-173 54-97 (321)
419 TIGR02655 circ_KaiC circadian 93.1 0.54 1.2E-05 48.3 9.6 60 115-183 250-314 (484)
420 PF03237 Terminase_6: Terminas 93.1 1.7 3.7E-05 42.7 13.1 146 127-289 1-154 (384)
421 PF03969 AFG1_ATPase: AFG1-lik 93.1 2.1 4.5E-05 42.0 13.1 110 123-278 62-172 (362)
422 TIGR03345 VI_ClpV1 type VI sec 93.0 1.2 2.6E-05 49.1 12.4 30 113-142 192-227 (852)
423 TIGR00416 sms DNA repair prote 93.0 0.8 1.7E-05 46.5 10.4 52 123-183 94-145 (454)
424 TIGR03346 chaperone_ClpB ATP-d 93.0 0.9 2E-05 50.2 11.6 19 124-142 195-213 (852)
425 TIGR02688 conserved hypothetic 93.0 0.59 1.3E-05 46.2 9.0 25 118-142 204-228 (449)
426 PF05729 NACHT: NACHT domain 93.0 0.73 1.6E-05 39.3 9.0 25 125-150 2-26 (166)
427 PF01443 Viral_helicase1: Vira 92.9 0.11 2.3E-06 47.7 3.8 14 126-139 1-14 (234)
428 PRK07414 cob(I)yrinic acid a,c 92.9 0.57 1.2E-05 40.5 7.8 52 232-283 114-167 (178)
429 PRK10436 hypothetical protein; 92.8 0.24 5.3E-06 50.1 6.4 40 109-149 202-243 (462)
430 TIGR03689 pup_AAA proteasome A 92.8 0.39 8.4E-06 49.1 7.8 17 123-139 216-232 (512)
431 PF03796 DnaB_C: DnaB-like hel 92.7 0.56 1.2E-05 43.8 8.3 112 123-248 19-145 (259)
432 cd01129 PulE-GspE PulE/GspE Th 92.7 0.28 6E-06 45.9 6.2 53 110-170 65-119 (264)
433 TIGR02397 dnaX_nterm DNA polym 92.5 0.47 1E-05 46.6 8.0 25 125-150 38-62 (355)
434 PRK09354 recA recombinase A; P 92.5 0.35 7.6E-06 46.8 6.7 43 123-173 60-102 (349)
435 CHL00095 clpC Clp protease ATP 92.5 1.1 2.4E-05 49.3 11.4 19 124-142 201-219 (821)
436 cd00983 recA RecA is a bacter 92.5 0.43 9.3E-06 45.8 7.2 44 123-174 55-98 (325)
437 TIGR00614 recQ_fam ATP-depende 92.4 0.81 1.8E-05 46.9 9.8 76 330-405 50-133 (470)
438 KOG0733 Nuclear AAA ATPase (VC 92.3 0.34 7.3E-06 49.4 6.4 54 83-139 505-561 (802)
439 PRK10865 protein disaggregatio 92.2 0.71 1.5E-05 50.9 9.5 19 124-142 200-218 (857)
440 TIGR00635 ruvB Holliday juncti 92.2 0.26 5.7E-06 47.3 5.6 17 124-140 31-47 (305)
441 COG1197 Mfd Transcription-repa 92.2 0.78 1.7E-05 50.6 9.4 82 323-404 635-721 (1139)
442 COG3267 ExeA Type II secretory 92.1 1.2 2.5E-05 40.7 9.0 28 120-148 47-75 (269)
443 TIGR01243 CDC48 AAA family ATP 92.1 0.55 1.2E-05 51.0 8.5 16 124-139 488-503 (733)
444 PRK08506 replicative DNA helic 92.0 1.5 3.1E-05 44.9 10.9 113 123-247 192-316 (472)
445 cd01130 VirB11-like_ATPase Typ 92.0 0.4 8.6E-06 42.3 6.0 32 108-139 9-41 (186)
446 PRK14953 DNA polymerase III su 91.9 0.65 1.4E-05 47.5 8.2 23 126-149 41-63 (486)
447 COG5008 PilU Tfp pilus assembl 91.9 0.62 1.3E-05 42.5 7.0 23 126-149 130-152 (375)
448 PRK06647 DNA polymerase III su 91.9 0.44 9.5E-06 49.6 7.1 24 125-149 40-63 (563)
449 COG2255 RuvB Holliday junction 91.9 0.31 6.7E-06 45.0 5.2 18 125-142 54-71 (332)
450 PRK07004 replicative DNA helic 91.9 1 2.2E-05 45.8 9.6 37 123-167 213-250 (460)
451 cd01125 repA Hexameric Replica 91.8 1.6 3.6E-05 40.1 10.2 55 125-179 3-64 (239)
452 KOG1132 Helicase of the DEAD s 91.8 4.7 0.0001 43.2 14.1 104 333-437 563-721 (945)
453 PF02534 T4SS-DNA_transf: Type 91.8 0.19 4.1E-06 51.5 4.3 50 124-183 45-94 (469)
454 PRK03992 proteasome-activating 91.8 0.64 1.4E-05 46.3 7.8 18 123-140 165-182 (389)
455 TIGR01243 CDC48 AAA family ATP 91.7 1.2 2.5E-05 48.5 10.5 18 122-139 211-228 (733)
456 PF10593 Z1: Z1 domain; Inter 91.7 0.46 1E-05 43.6 6.3 103 355-466 110-217 (239)
457 cd01128 rho_factor Transcripti 91.7 0.42 9.1E-06 44.2 6.0 20 120-139 13-32 (249)
458 PRK08840 replicative DNA helic 91.7 2.3 5.1E-05 43.2 11.9 52 120-179 214-265 (464)
459 PRK09087 hypothetical protein; 91.6 0.62 1.3E-05 42.5 7.0 38 235-274 89-126 (226)
460 TIGR02533 type_II_gspE general 91.6 0.36 7.8E-06 49.4 6.0 39 109-148 226-266 (486)
461 KOG0741 AAA+-type ATPase [Post 91.5 1.5 3.4E-05 44.1 9.8 69 91-169 494-574 (744)
462 PF12846 AAA_10: AAA-like doma 91.5 0.32 6.9E-06 46.4 5.3 43 123-173 1-43 (304)
463 TIGR00767 rho transcription te 91.5 0.76 1.6E-05 45.2 7.7 29 120-149 165-193 (415)
464 KOG2036 Predicted P-loop ATPas 91.4 1.6 3.5E-05 45.2 10.0 134 110-275 255-412 (1011)
465 KOG0058 Peptide exporter, ABC 91.4 1.4 3E-05 46.2 9.9 41 231-272 620-660 (716)
466 PRK13897 type IV secretion sys 91.4 0.23 5E-06 52.0 4.4 50 124-183 159-208 (606)
467 cd01126 TraG_VirD4 The TraG/Tr 91.3 0.15 3.3E-06 50.7 3.0 48 125-182 1-48 (384)
468 TIGR00665 DnaB replicative DNA 91.3 2.1 4.5E-05 43.4 11.2 38 123-167 195-232 (434)
469 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.2 1.5 3.2E-05 36.8 8.4 31 231-261 86-116 (144)
470 PF00437 T2SE: Type II/IV secr 91.2 0.3 6.6E-06 45.9 4.7 43 121-171 125-167 (270)
471 TIGR02538 type_IV_pilB type IV 91.1 0.45 9.8E-06 49.8 6.3 40 109-149 300-341 (564)
472 COG1618 Predicted nucleotide k 91.1 0.33 7.1E-06 40.9 4.1 117 124-260 6-129 (179)
473 cd01131 PilT Pilus retraction 91.1 0.35 7.6E-06 43.1 4.7 39 126-171 4-42 (198)
474 PF02606 LpxK: Tetraacyldisacc 91.1 15 0.00034 35.4 16.5 57 330-389 226-287 (326)
475 TIGR02858 spore_III_AA stage I 91.0 1.5 3.3E-05 41.0 9.1 25 115-139 100-127 (270)
476 COG4555 NatA ABC-type Na+ tran 90.9 1.7 3.8E-05 38.2 8.5 54 231-284 149-202 (245)
477 COG1132 MdlB ABC-type multidru 90.9 0.55 1.2E-05 49.4 6.8 39 231-269 481-519 (567)
478 PRK08058 DNA polymerase III su 90.9 1.9 4E-05 41.9 9.9 41 231-272 108-148 (329)
479 PRK14970 DNA polymerase III su 90.8 1.5 3.2E-05 43.4 9.4 24 125-149 41-64 (367)
480 COG1485 Predicted ATPase [Gene 90.8 6.3 0.00014 37.9 12.8 109 124-278 66-175 (367)
481 PRK08006 replicative DNA helic 90.8 3.6 7.9E-05 42.0 12.2 114 123-246 224-349 (471)
482 COG0630 VirB11 Type IV secreto 90.7 0.64 1.4E-05 44.6 6.5 56 107-171 126-182 (312)
483 KOG0344 ATP-dependent RNA heli 90.7 4.1 9E-05 41.5 12.1 99 131-244 365-467 (593)
484 KOG0060 Long-chain acyl-CoA tr 90.7 0.26 5.6E-06 49.9 3.8 46 215-261 571-616 (659)
485 COG2812 DnaX DNA polymerase II 90.7 0.6 1.3E-05 47.6 6.4 39 231-273 117-156 (515)
486 PF13555 AAA_29: P-loop contai 90.7 0.35 7.7E-06 33.7 3.4 24 123-148 23-46 (62)
487 cd03239 ABC_SMC_head The struc 90.6 0.39 8.4E-06 42.0 4.5 41 232-272 115-156 (178)
488 PRK05748 replicative DNA helic 90.6 3.1 6.6E-05 42.4 11.6 112 123-246 203-327 (448)
489 COG0467 RAD55 RecA-superfamily 90.1 0.64 1.4E-05 43.4 5.8 55 122-185 22-76 (260)
490 TIGR03743 SXT_TraD conjugative 90.1 0.9 2E-05 48.1 7.5 55 123-185 176-232 (634)
491 PF03266 NTPase_1: NTPase; In 90.1 0.28 6.2E-06 42.3 3.1 28 232-259 94-123 (168)
492 KOG2543 Origin recognition com 90.0 2.8 6E-05 40.6 9.7 158 108-296 9-179 (438)
493 PRK09376 rho transcription ter 89.9 1.3 2.8E-05 43.5 7.7 28 122-150 168-195 (416)
494 PRK00080 ruvB Holliday junctio 89.9 0.83 1.8E-05 44.4 6.6 18 124-141 52-69 (328)
495 PRK14701 reverse gyrase; Provi 89.8 1.2 2.5E-05 52.3 8.6 61 330-390 121-187 (1638)
496 PRK08760 replicative DNA helic 89.8 2.2 4.7E-05 43.7 9.7 110 125-246 231-352 (476)
497 TIGR03754 conj_TOL_TraD conjug 89.6 1.2 2.6E-05 46.7 7.7 57 123-187 180-238 (643)
498 TIGR03819 heli_sec_ATPase heli 89.6 0.99 2.2E-05 43.9 6.8 63 98-171 154-217 (340)
499 KOG0739 AAA+-type ATPase [Post 89.4 4.5 9.8E-05 37.8 10.2 83 82-182 126-213 (439)
500 COG0466 Lon ATP-dependent Lon 89.4 1.1 2.4E-05 46.8 7.1 47 212-261 399-445 (782)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-82 Score=612.68 Aligned_cols=432 Identities=65% Similarity=1.072 Sum_probs=404.9
Q ss_pred CCCCcccccccccCccccCCCHHHHHHHHhhcCceEecCC-CCCCcCCccc-----------------------------
Q 011188 41 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRD----------------------------- 90 (491)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~f~~----------------------------- 90 (491)
..+.++.+++|.+.+........+.+.++..+++.+++.. +|.|..+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677899999999999998888888888888888887755 7777666554
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhc-CCCCCCCCCCEEEEEcccH
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~~~~~vlil~Pt~ 169 (491)
+++++++..+++..+|..|+|+|.+.||.+++|+|++..|.||||||++|++|++.++.. +.....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 445667777788999999999999999999999999999999999999999999999998 6667778899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC
Q 011188 170 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 249 (491)
Q Consensus 170 ~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~ 249 (491)
|||.|+.+.+.+++....+++.|+|||.+...|.+.+.++.+|+|+||++|.++++....+++++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhc-CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCC-CcccccceeeeeeccChhhHHHHHHHHHHh
Q 011188 250 FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 327 (491)
Q Consensus 250 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 327 (491)
|.+++++|+..+ ++..|++++|||||.+++.++..++.+|..+.+... ++.++..+.|.+..+++..|...|..+|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 667799999999999999999999999999998866 778899999999999999999999999999
Q ss_pred hc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE
Q 011188 328 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 405 (491)
Q Consensus 328 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~ 405 (491)
.. .++|+||||+|++.|+.|+..|+..++++..|||+.++.+|+.+++.|++|+..|||||+++++|||+|+|++||+
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 86 4559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCCC
Q 011188 406 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 472 (491)
Q Consensus 406 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 472 (491)
||+|.+.++|+||+||+||+|++|.+++|++..+...+..+.+.++++++++|+.|.+++.....++
T Consensus 416 ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999998775544
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=8.3e-80 Score=629.51 Aligned_cols=448 Identities=65% Similarity=1.043 Sum_probs=411.8
Q ss_pred CCCCCCC-CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCceE-ecCCCCCCcCCcccCCCCHHHHHHHHHCCCCC
Q 011188 31 GAESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFE 108 (491)
Q Consensus 31 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~ 108 (491)
+...+.. |+...+++++|+||.+++.+..++.++++++++..++.+ .+..+|+|+.+|+++++++.+++.|...+|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 3344444 888889999999999999999999999999999988886 68889999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
|+|+|.++||.+++|+|+|+++|||||||++|++|++.++..++......++.+|||+||++||.|+.+++.+++...++
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999988766555566899999999999999999999999988899
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceE
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 268 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i 268 (491)
++.+++|+.....+...+..+++|+|+||++|.+++.....++.++++|||||||++++++|...+..++..++++.|++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 99999999998888888889999999999999999998888899999999999999999999999999999999999999
Q ss_pred EeccCCcHHHHHHHHHHcc-CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHH
Q 011188 269 YWSATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 346 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~ 346 (491)
++|||+|.+++.+++.++. .+..+.+..........+.+.+..+....|...|.+++.... .+.++||||++++.|+.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 9999999999999998886 577777766555566677888888888889999999998876 56799999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCC
Q 011188 347 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 426 (491)
Q Consensus 347 l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g 426 (491)
+++.|+..++++..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCCCCCCCCC
Q 011188 427 AKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSSGHGGFR 478 (491)
Q Consensus 427 ~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 478 (491)
+.|.+++|+++.+...+..|.+.++++++++|++|.+++.....+..+..++
T Consensus 473 ~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~~~~~~~ 524 (545)
T PTZ00110 473 AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSNGTERRRWG 524 (545)
T ss_pred CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcCCccccccc
Confidence 9999999999999999999999999999999999999998776543433333
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-77 Score=543.30 Aligned_cols=430 Identities=47% Similarity=0.800 Sum_probs=404.7
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCce-E------ecCCCCCCcCCccc-CCCCHHHHHHHHHCCCCCC
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREIT-V------EGRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEP 109 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~ 109 (491)
..|.+++|..|+||.+.+..+.++.+++.++++.+... + +..++|+|.-+|++ +...+++++.+.+.||.+|
T Consensus 164 ~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKP 243 (629)
T KOG0336|consen 164 FKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKP 243 (629)
T ss_pred cccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCC
Confidence 45778999999999999999999999999999885443 3 23568999999998 4778999999999999999
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC-CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 110 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
+|+|.+|||.+++|+|++.+|+||+|||++|++|.+.++..++.. ....++.+|+++||++|+.|+.-+..++. ..++
T Consensus 244 tPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ 322 (629)
T KOG0336|consen 244 TPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGL 322 (629)
T ss_pred CcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCc
Confidence 999999999999999999999999999999999999999877653 35568999999999999999999998875 5578
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceE
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 268 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i 268 (491)
+.+++|||.....+...+..+.+|+|+||++|.++......++..+.|+|+||||+|++++|.+++++|+..+++++|++
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHH
Q 011188 269 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 348 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 348 (491)
+.|||||+.+.+++..|+.+|..+.++..++.+...+.|.+.+..+.+|...+..+++......++||||..+..|+.|.
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhcc
Confidence 99999999999999999999999999999999999999999888888999888889988888889999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCc
Q 011188 349 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 428 (491)
Q Consensus 349 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 428 (491)
.-|.-.|+.+..+||+-++.+|+..++.|+.|+++|||||+++++|+|+|+++||++||+|.+++.|+||+||+||+|+.
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~ 562 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRT 562 (629)
T ss_pred chhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCC
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhccCC
Q 011188 429 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 468 (491)
Q Consensus 429 g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 468 (491)
|.++.|++.+|...+..|+++|++++|++|++|..||+.-
T Consensus 563 G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 563 GTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred cceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999754
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-75 Score=545.82 Aligned_cols=428 Identities=48% Similarity=0.790 Sum_probs=412.0
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 117 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 117 (491)
.....+++|+|+||.++.++..++..+...++....+.+.+...|+|+.+|+++++++.+..++.+.-|.+|||+|.+++
T Consensus 175 hs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qal 254 (731)
T KOG0339|consen 175 HSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQAL 254 (731)
T ss_pred hhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccc
Confidence 55666889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCc
Q 011188 118 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 197 (491)
Q Consensus 118 ~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~ 197 (491)
|..+++++++-.|.||||||.+|+.|++.|+..++.+..+++|..|||||||+||.|+..++++|++..+++++++|||.
T Consensus 255 ptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGg 334 (731)
T KOG0339|consen 255 PTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGG 334 (731)
T ss_pred ccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHH
Q 011188 198 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKE 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 277 (491)
+..+|...+..++.||||||++|++++..+..++.++++|||||+++|++++|.++++.|...+++++|+++||||++..
T Consensus 335 sk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 335 SKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414 (731)
T ss_pred cHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh-hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCC
Q 011188 278 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 356 (491)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 356 (491)
++.+++.++.+|+.++..... ..+..+.|.+.++.+ ..|++.|+..|......+++|||+.-+..++.++..|+..++
T Consensus 415 Ie~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 415 IEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred HHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 999999999999999888655 667788888887765 578888998888887778999999999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 357 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 357 ~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
++..+||++.+.+|.+++..|+++...|||+|+++++|+|||++..||+||.-.+++.|.||+||+||.|.+|.+|++++
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHhhcc
Q 011188 437 AANARFAKELITILEEAGQKVSPELAAMGR 466 (491)
Q Consensus 437 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 466 (491)
+.|.+++-.|++.|+.++|.||..|.+||.
T Consensus 574 eKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 574 EKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred hhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 999999999999999999999999999984
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-70 Score=559.56 Aligned_cols=426 Identities=36% Similarity=0.613 Sum_probs=386.1
Q ss_pred CCCCCCCcccccccccCccccC-CCHHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 116 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 116 (491)
-+++.+++++++||...+.... ++.++++.+++..++.+.+...|.|+.+|+++++++.+++.|...||..|+|+|.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~a 151 (518)
T PLN00206 72 PKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQA 151 (518)
T ss_pred CchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHH
Confidence 3456677889999998887765 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCC--CCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEE
Q 011188 117 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 194 (491)
Q Consensus 117 i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~ 194 (491)
||.+++|+|+++++|||||||++|++|++.++..... .....++++|||+||++||.|+.+.++.+....++++..++
T Consensus 152 ip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~ 231 (518)
T PLN00206 152 IPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVV 231 (518)
T ss_pred HHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 9999999999999999999999999999998864321 12235789999999999999999999999888889999999
Q ss_pred CCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 195 GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 195 ~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
||.....+...+..+++|+|+||++|.+++......+.++++|||||||+|++++|...+..++..+ +..|++++|||+
T Consensus 232 gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl 310 (518)
T PLN00206 232 GGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATV 310 (518)
T ss_pred CCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeC
Confidence 9998888888888889999999999999999888889999999999999999999999999999888 468999999999
Q ss_pred cHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhcc-CCeEEEEeCCcccHHHHHHHHHh
Q 011188 275 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM 353 (491)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~ 353 (491)
++.++.++..++.++..+.+.... .....+.+.+..+....+...+.+++..... ..++||||+++..++.+++.|..
T Consensus 311 ~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 311 SPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 999999999999888887776554 3445567777777777888888888876533 35899999999999999999975
Q ss_pred -CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEE
Q 011188 354 -DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 432 (491)
Q Consensus 354 -~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 432 (491)
.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhc
Q 011188 433 TFFTAANARFAKELITILEEAGQKVSPELAAMG 465 (491)
Q Consensus 433 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~ 465 (491)
+|+++.+...+.++.+.++..++.+|++|.++.
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999999999999998865
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-71 Score=505.95 Aligned_cols=371 Identities=39% Similarity=0.594 Sum_probs=350.4
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 161 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 161 (491)
.....+|.++++.++++++++..++..|+++|.++||.++.|+|+|+.|+||||||.+|++|++++++.++ ..++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~ 131 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFF 131 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCce
Confidence 34467899999999999999999999999999999999999999999999999999999999999999865 3589
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHh-ccCccccCccEEEEc
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLD 240 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lIiD 240 (491)
++||+||||||.|+.+.+..++...++++.++.||.....+...+.+.++|+|+||++|++++. .+.+++..++++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 567889999999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
|||++++++|...+..|++.++..+|++++|||++..+.++....+.+|..+...... ..-..+.|.+..++...|...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchh
Confidence 9999999999999999999999999999999999999999999999999998877765 455678888889999999999
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
|..++++... ..+||||++...++.++-.|+..|+.+..+||.|++..|...++.|++|..+||||||++++|+|+|.|
T Consensus 291 LV~ll~e~~g-~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 291 LVYLLNELAG-NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHHhhcC-CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 9999998754 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCC--CCH
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK--VSP 459 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~ 459 (491)
++|||||.|.+..+|+||+||++|+|+.|.++.|++..|.+.+..|...+++...+ +++
T Consensus 370 d~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 370 DVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred eEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999999999999999999999999999888755 554
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3e-71 Score=520.71 Aligned_cols=411 Identities=45% Similarity=0.757 Sum_probs=382.0
Q ss_pred cccCCCHHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCCh
Q 011188 56 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 135 (491)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsG 135 (491)
....+++.++.-|+....+.+.+..+|+|+.+|++.++|..+++.+.+.||..|+|+|..+||..++++|+|..+.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 35667788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCC----CCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCc
Q 011188 136 KTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 211 (491)
Q Consensus 136 KT~~~~~~~l~~l~~~~~~~----~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~ 211 (491)
||++|++|++..+..-|... ...+|.++|++|||+|++|+.++-.+|++.++++++.+.||.+..++--.+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999998876433 34689999999999999999999999999999999999999999999888999999
Q ss_pred EEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCC-------------------------CCc
Q 011188 212 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------------------------DRQ 266 (491)
Q Consensus 212 Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~-------------------------~~~ 266 (491)
|+|+||++|.+.|++..+-++++.++|+|||++|.+++|.+.+..++..++. -.|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 9999999999999999999999999999999999999999999999988852 158
Q ss_pred eEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHH
Q 011188 267 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 346 (491)
Q Consensus 267 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 346 (491)
+++||||+|+.++.+++.|+.+|..+.++... .....+.|.+..++...|...|.++|+... ..++|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~~-~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESNF-DPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhCC-CCCEEEEEechhhHHH
Confidence 99999999999999999999999999999877 666778999999999999999999999873 3589999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCC
Q 011188 347 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 426 (491)
Q Consensus 347 l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g 426 (491)
|++.|.+.++++..+||+.++++|+.+++.|++|..+|||||+++++|||||+|.+||+||++.++.+|+|||||+||+|
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeCcccHHHHHHHHHHHH-HhCCCCCHHHHhhccCC
Q 011188 427 AKGTAYTFFTAANARFAKELITILE-EAGQKVSPELAAMGRGA 468 (491)
Q Consensus 427 ~~g~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~~~~~ 468 (491)
+.|.+++|+++.|...+.+|...+. ......|.+|....+..
T Consensus 613 k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 9999999999999999999988887 55777888876544433
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.3e-71 Score=504.99 Aligned_cols=417 Identities=42% Similarity=0.697 Sum_probs=385.7
Q ss_pred cccccCccccCCCHHHHHHHHhhcCceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEE
Q 011188 49 NFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIG 128 (491)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii 128 (491)
..|...--+..+++++.+..+++..|.++++.+|+|+.+|.++.+|..+++.|++.|+..|||+|.+.+|.+++|+|+|.
T Consensus 133 T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIG 212 (610)
T KOG0341|consen 133 TAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIG 212 (610)
T ss_pred hccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceee
Confidence 34444455777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHHhhcCC---CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC------CCceEEEEECCccC
Q 011188 129 IAETGSGKTLAYLLPAIVHVNAQP---FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS------SKIKSTCIYGGVPK 199 (491)
Q Consensus 129 ~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~------~~~~v~~~~~g~~~ 199 (491)
.|-||||||++|.+|++...+++. ....+.+|..||+||+|+||.|.++.+..+... ..++...+.||.+.
T Consensus 213 IAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v 292 (610)
T KOG0341|consen 213 IAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV 292 (610)
T ss_pred EEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH
Confidence 999999999999999998887653 345677999999999999999999988876432 23677888999999
Q ss_pred hhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHH
Q 011188 200 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 279 (491)
Q Consensus 200 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 279 (491)
..+...+..+.+|+|+||++|.+++.+...++.-+.|+.+||||+|.+++|...++.+...+...+|+++||||+|..++
T Consensus 293 ~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ 372 (610)
T KOG0341|consen 293 REQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQ 372 (610)
T ss_pred HHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceE
Q 011188 280 HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 359 (491)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~ 359 (491)
.+++..+..|+.+.++... .++.++.|.+.++..+.|...|++.|+...+ ++||||..+..++.++++|--.|..++
T Consensus 373 ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~P--pVLIFaEkK~DVD~IhEYLLlKGVEav 449 (610)
T KOG0341|consen 373 NFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFAEKKADVDDIHEYLLLKGVEAV 449 (610)
T ss_pred HHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCCC--ceEEEeccccChHHHHHHHHHccceeE
Confidence 9999999999999999877 5666777888888999999999998887544 799999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-
Q 011188 360 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA- 438 (491)
Q Consensus 360 ~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~- 438 (491)
.+||+.++++|...++.|+.|+.+|||||++++.|+|+|++.||||||.|..+++|+|||||+||.|++|.+.+|+..+
T Consensus 450 aIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 450 AIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred EeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cHHHHHHHHHHHHHhCCCCCHHHHhhccCC
Q 011188 439 NARFAKELITILEEAGQKVSPELAAMGRGA 468 (491)
Q Consensus 439 ~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 468 (491)
+...+.+|..+|.+++|++|+.|..++..-
T Consensus 530 ~esvLlDLK~LL~EakQ~vP~~L~~L~~~~ 559 (610)
T KOG0341|consen 530 EESVLLDLKHLLQEAKQEVPPVLAELAGPM 559 (610)
T ss_pred hHHHHHHHHHHHHHhhccCCHHHHHhCCCc
Confidence 566789999999999999999999998644
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-68 Score=509.61 Aligned_cols=410 Identities=43% Similarity=0.717 Sum_probs=373.8
Q ss_pred HHHHHHHhhcCce--EecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 011188 63 REVEEYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 63 ~~~~~~~~~~~~~--~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 140 (491)
+...++.+.+.+. +.+.++|.++.+|.+..+.+.+..+++..++..|+|+|+.+||.+..|+++++||+||||||.+|
T Consensus 49 ~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 49 STGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAF 128 (482)
T ss_pred chhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHH
Confidence 3444555554444 46888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCC-----CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEe
Q 011188 141 LLPAIVHVNAQPFLAP-----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 215 (491)
Q Consensus 141 ~~~~l~~l~~~~~~~~-----~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~ 215 (491)
++|++.+++++..... ...|.+||++||||||.|++++.+++.....+++...||+.+...+.+.+..+|+|+|+
T Consensus 129 LiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlva 208 (482)
T KOG0335|consen 129 LIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVA 208 (482)
T ss_pred HHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEe
Confidence 9999999988644221 12589999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCccccCccEEEEcccccccc-CCcHHHHHHHHhhcC----CCCceEEeccCCcHHHHHHHHHHccC-C
Q 011188 216 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIR----PDRQTLYWSATWPKEVEHLARQYLYN-P 289 (491)
Q Consensus 216 T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~-~ 289 (491)
||++|.++++.+.+.+.++.++|+||||+|++ ++|.+.++.|+.... ...|.++||||+|..+..++..++.+ .
T Consensus 209 TpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~y 288 (482)
T KOG0335|consen 209 TPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNY 288 (482)
T ss_pred cCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccc
Confidence 99999999999999999999999999999999 999999999998874 37899999999999999998888887 6
Q ss_pred cEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc---cCC-----eEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 011188 290 YKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALSI 361 (491)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~~lVf~~~~~~~~~l~~~L~~~~~~~~~i 361 (491)
+.+.+.... ....++.|.+..+.+.+|...|++++.... ... +++|||.+++.|+.++..|...++++..+
T Consensus 289 i~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sI 367 (482)
T KOG0335|consen 289 IFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSI 367 (482)
T ss_pred eEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceee
Confidence 666666655 677789999999999999999999998654 233 79999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 362 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 362 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
||+.++.+|.+.++.|+.|++.+||||+++++|+|+|+|+|||+||+|.+..+|+|||||+||+|+.|.++.|++..+..
T Consensus 368 hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQN 447 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHhhccCCCCCCC
Q 011188 442 FAKELITILEEAGQKVSPELAAMGRGAPPSSG 473 (491)
Q Consensus 442 ~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~ 473 (491)
.++.|.+++.++++++|+||.++++....+++
T Consensus 448 i~~~L~~~l~ea~q~vP~wl~~~~~~~~~~~~ 479 (482)
T KOG0335|consen 448 IAKALVEILTEANQEVPQWLSELSRERELGGG 479 (482)
T ss_pred hHHHHHHHHHHhcccCcHHHHhhhhhccccCc
Confidence 99999999999999999999997776644433
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-68 Score=537.56 Aligned_cols=428 Identities=47% Similarity=0.802 Sum_probs=408.5
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcC-ceEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 116 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 116 (491)
.....+++|.++||.+.+++..++..++..|..... +.+.+...|.|+.+|.+.+++..++..+++++|..|+|+|.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 456678999999999999999999999999999866 9999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC
Q 011188 117 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 196 (491)
Q Consensus 117 i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g 196 (491)
||+|++|+++|.+|.||||||++|++|++.|...++....++||.+||++||++|+.|+.+++++|...++++++++||+
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg 475 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG 475 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHhhcCCcEEEeChHHHHHHHhcc---CccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 197 VPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
....+++..+..++.|+||||+++++++-.. ..++.++.++|+||||+|.+++|.++...|+..+++.+|++++|||
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 9999999999999999999999999987653 3456777799999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-hhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHH
Q 011188 274 WPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 352 (491)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~ 352 (491)
+|..+..+++..+..|+.+.+.... .....+.|.+.++. +..|+..|.++|.+.....++||||...+.|+.+.+.|.
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 9999999999999999998888655 77788899998888 899999999999999888999999999999999999999
Q ss_pred hCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEE
Q 011188 353 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 432 (491)
Q Consensus 353 ~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 432 (491)
+.++++..+||+.++.+|..++++|+++.+.+||||+++++|+|++.+..||+||+|...++|+||+||+||+|++|.|+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhcc
Q 011188 433 TFFTAANARFAKELITILEEAGQKVSPELAAMGR 466 (491)
Q Consensus 433 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 466 (491)
+|+++++..++.+|.+.++..++.+|..|..|+.
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 9999999999999999999999999999998874
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-67 Score=460.40 Aligned_cols=383 Identities=33% Similarity=0.585 Sum_probs=354.5
Q ss_pred eEecCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC
Q 011188 75 TVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 154 (491)
Q Consensus 75 ~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~ 154 (491)
..+....-.++.+|+++++.+++++.+...||.+|..+|+.|++.++.|+|+++++..|+|||.+|.+.+++.+.-.
T Consensus 16 ~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--- 92 (400)
T KOG0328|consen 16 EFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--- 92 (400)
T ss_pred eEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc---
Confidence 33344555678899999999999999999999999999999999999999999999999999999888887765542
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCc
Q 011188 155 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 155 ~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
....++||++||||||.|+.+.+..++...++.+..+.||.+..+.++.+..+++++.+||++++++++...+..+.+
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce
Confidence 235789999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh
Q 011188 235 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 314 (491)
Q Consensus 235 ~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
+++|+||||.|++.+|..++-.+.+.++++.|++++|||+|.++.++...|+.+|+.+.+...+ ...+.++|.+..+..
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~ 249 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEK 249 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC-Cchhhhhhheeeech
Confidence 9999999999999999999999999999999999999999999999999999999999998877 444556776665555
Q ss_pred h-hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 315 S-QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 315 ~-~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
+ .|+..|.++...+.- .+++|||||+..+++|.+.+++.++.+..+||+|++++|++++.+|+.|+.+||++|++.++
T Consensus 250 EewKfdtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaR 328 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWAR 328 (400)
T ss_pred hhhhHhHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhc
Confidence 4 599999999988755 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhh
Q 011188 394 GLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 464 (491)
Q Consensus 394 Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 464 (491)
|+|+|.+++|||||+|.+.+.|+||+||.||.|++|.++-|+..+|.+.++++.+.+..+-.++|.++.++
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-66 Score=524.30 Aligned_cols=373 Identities=44% Similarity=0.709 Sum_probs=341.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.+|+++++++.+++++.+.||..|+|+|.++||.++.|+|+++.|+||||||++|++|++.++.... .. ....+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~-~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ER-KYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--cc-CCCceEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999977421 11 11119999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 166 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
+||||||.|+++.+..++... ++++..++||.+...+...+..+++|+|+||++|++++....+++..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999998988899999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCc-ccccceeeeeeccChhh-HHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQ-KYNKLV 322 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~ 322 (491)
|++++|.+.+..|+..++++.|+++||||+|..+..+++.++.+|..+.+..... .....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888774332 36677888888888766 999999
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
.++...... ++||||+++..++.++..|+..|+++..+||++++.+|..+++.|++|+.+||||||++++|||||++++
T Consensus 266 ~ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 999876554 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-cHHHHHHHHHHHHHh---CCCCCHHHH
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA---GQKVSPELA 462 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~~~~~l~ 462 (491)
|||||+|.++++|+||+||+||+|+.|.+++|+++. +...+..+.+.+... ...+|....
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 999999999999999999999999999999999986 888899988887665 335555433
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.9e-65 Score=511.78 Aligned_cols=365 Identities=38% Similarity=0.683 Sum_probs=328.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCC-CCCCCEEEEE
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVL 165 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~vlil 165 (491)
+|+++++++.+++.+.+.+|..|+|+|.++|+.+++++|+|+++|||||||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999987643211 1234589999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc
Q 011188 166 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~ 245 (491)
+||++||.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999888888888888999999999999998888888999999999999999
Q ss_pred ccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHH
Q 011188 246 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 325 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 325 (491)
++++|...+..++..++...|++++|||+++.+..+...++.++..+.+.... .....+.+.+..++...+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877765543 33445667777777777776666666
Q ss_pred HhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE
Q 011188 326 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 405 (491)
Q Consensus 326 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~ 405 (491)
... ...++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 241 ~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 543 3458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHh
Q 011188 406 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 453 (491)
Q Consensus 406 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 453 (491)
|++|.++.+|+||+||+||.|..|.+++|+...+...+..+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888888876543
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-63 Score=500.49 Aligned_cols=367 Identities=38% Similarity=0.582 Sum_probs=329.2
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCC--CCCCCEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 162 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~v 162 (491)
-.+|+++++++.+++++...||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999987654321 2346889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 242 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEa 242 (491)
|||+||++||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998888787788888999999999999999888888999999999999
Q ss_pred cccccCCcHHHHHHHHhhcCC--CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHH
Q 011188 243 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
|++++++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.... .....+.+.+.......|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999988874 45679999999999999998888888877765443 334456666666677788888
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
+..++... ...++||||+++..|+.+++.|...++++..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88887764 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHh
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 453 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 453 (491)
++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888887766544
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-65 Score=479.51 Aligned_cols=363 Identities=36% Similarity=0.552 Sum_probs=333.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..+|.+++|+-++++++...||..|||+|..+||..+-|+|++.||.||||||.+|++|+|.+++..|. .....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk--~~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK--KVAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc--cCcceeEEE
Confidence 358999999999999999999999999999999999999999999999999999999999999998763 344678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEEcccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDEah 243 (491)
|||||+|+.|++...+++..+.++.+....||.+...|...+...+||+|+||++|.+++.+ ..+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 46789999999999999
Q ss_pred ccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee-cc--ChhhHHHH
Q 011188 244 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IV--SESQKYNK 320 (491)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~k~~~ 320 (491)
+|++.+|..++..|+..+++++|+++||||+...+.+++...+..|+.+.++... .....+.|-+. +- .+.++...
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999998876 34444444433 22 23456677
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
+..++..... .++|||+.+++.|+.+.-.|--.|+++.-+||.+++.+|.+.++.|++.+++|||||+++++|+||+.+
T Consensus 417 l~~l~~rtf~-~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTFQ-DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhcc-cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 7788877664 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHH
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 451 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 451 (491)
.+||||++|.+...|+||+||+.|+|+.|.+++|+.+.+...++.+.+.-.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~ 546 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSST 546 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999988888887743
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.1e-63 Score=505.83 Aligned_cols=366 Identities=39% Similarity=0.631 Sum_probs=327.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCC--CCCCCEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 162 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~v 162 (491)
..+|+++++++.+++.|.+.||..|+|+|.++||.+++++|+++++|||||||++|++|++.++...+... ....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34799999999999999999999999999999999999999999999999999999999999987543221 2235789
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-CccccCccEEEEcc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDE 241 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lIiDE 241 (491)
|||+||++|+.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|++++... .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999888887778888999999999999988764 46688999999999
Q ss_pred ccccccCCcHHHHHHHHhhcCC--CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHH
Q 011188 242 ADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 319 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 319 (491)
||++++++|...+..++..++. ..|+++||||++..+..+...++..+..+.+.... .....+.+.+.......|..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 9999999999999999998876 68999999999999999999999888777665544 33445667777777778888
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
.+..++... .+.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 888877653 4568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 400 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 400 ~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
+++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+...+.++.+.+..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888888888776544
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-63 Score=445.68 Aligned_cols=367 Identities=35% Similarity=0.512 Sum_probs=334.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
...|+.+|+++|+.+.+++.++.+|||+|..+||.|+.|+|+|.+|.||||||++|.+|+++.+.++| .+..++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999865 5888999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc----CccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lIiD 240 (491)
++|||+||.|+.++|..+++..++++.+++||++.-.+...+.+.++++|+||+++.+++... .+.+++++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999998899999999999999999999988765 3357899999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEe-cCCCcccccceeeeeeccChhhHHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII-GSPDLKANHAIRQHVDIVSESQKYN 319 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~ 319 (491)
||+++++..|...+..+.+.+++.+|.++||||+.+.+..+.......+..+.. ..++......+.|.+..++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 999999999999999999999999999999999988777766555444333332 2244566677888888899999999
Q ss_pred HHHHHHHhhcc--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCC
Q 011188 320 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 397 (491)
Q Consensus 320 ~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 397 (491)
.+..+|..... ...++||+++..+|+.|+..|+..++.+..+|+.|++.+|...+.+|+.+..+|||||+++++|+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999987655 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCC
Q 011188 398 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 456 (491)
Q Consensus 398 ~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 456 (491)
|.|+.|||+|.|.++.+|+||+||+.|+|+.|.++.++++.|.+.+..+.+.+.++-.+
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999988888877665443
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-61 Score=491.37 Aligned_cols=359 Identities=39% Similarity=0.620 Sum_probs=328.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.+|+++++++.+++++.+.||.+|+|+|.++|+.+++++|++++||||||||++|++|++.++... ...+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999988642 135679999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 166 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
+||++||.|+.++++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999887644 6889999999999888888888999999999999999998888899999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
|++++|...+..++..+++..|++++|||+++.+..+...++.+|..+.+.... ....+.+.+..+....|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776543 234467777777777888888888
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 404 (491)
+.... ..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 237 l~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 87654 45799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 405 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 405 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
+|++|.++..|+||+||+||.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988887777776543
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9.7e-63 Score=461.25 Aligned_cols=362 Identities=36% Similarity=0.565 Sum_probs=330.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
...|++..+++..+++++.+||..+|++|+..|+.++.|+|+++.|.||+|||++|++|++..+...+...+ ++..+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 456788899999999999999999999999999999999999999999999999999999999988665433 6788999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC-ccccCccEEEEccc
Q 011188 165 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDEA 242 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~-~~l~~~~~lIiDEa 242 (491)
+||||+||.|++.+++++.... .+.+..+.||.........+.++++|+|+||++|.+++++.. +..++++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999988777 899999999999998888888899999999999999999854 34567789999999
Q ss_pred cccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccC-CcEEEecCC-CcccccceeeeeeccChhhHHHH
Q 011188 243 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSP-DLKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
|++++.+|...++.|+..++..+|.++||||.++.++++++..+.. +..+..... .......+.|.+.+.+...++-.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999999988775 555554433 23445567888888888888999
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
+..+|++.....++||||+|...+..+++.|+...++|..+||..++..|..+...|++.+.-|||||++++||+|+|+|
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 99999998777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
++||+||+|.++.+|+||+||+||.|..|.+++++.+.+..+++.|.
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999998877766554
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-61 Score=498.12 Aligned_cols=357 Identities=39% Similarity=0.635 Sum_probs=322.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..+|++++|++.++++|.+.||.+|+|+|.++|+.++.++++|++||||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999887542 23678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 165 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
|+||++||.|+++.+.++.... ++.+..++||.....+...+..+++|+|+||++|++++......++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999887654 689999999998888888888889999999999999999888889999999999999
Q ss_pred ccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHH
Q 011188 244 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 323 (491)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 323 (491)
.|++++|...+..++..+++..|+++||||+|+.+..+.+.++.+|..+.+.... .....+.+.+..+....|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888776554 334456666667777788888888
Q ss_pred HHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEE
Q 011188 324 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 403 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V 403 (491)
++.... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 239 ~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 887643 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHH
Q 011188 404 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 448 (491)
Q Consensus 404 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 448 (491)
|+||+|.+...|+||+||+||.|+.|.+++|+++.+...++.+.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999999876655555443
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-62 Score=461.22 Aligned_cols=357 Identities=33% Similarity=0.535 Sum_probs=329.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEE
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 162 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 162 (491)
..+..|++++++....++|...+|..++.+|.++||..++|+|+|..|.||||||++|++|++.++....+. ...|.-+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-PTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC-CCCCcee
Confidence 346789999999999999999999999999999999999999999999999999999999999999876553 3457779
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEEcc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 241 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDE 241 (491)
||++|||+||.|+.+.+.+.+....+....+.||.........+. .++|+||||++|+.++.. ..++..++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 999999999999999999999999999999999998765555544 589999999999998875 466778999999999
Q ss_pred ccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC-cccccceeeeeeccChhhHHHH
Q 011188 242 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
||+|+++||...+..|+..+++.+|+++||||....+.++++..+.+|..+.+.... ...+..+.|.+.+++-.+|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999887443 5677889999999999999999
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
|..+|+.+.+ .+.|||+.|.+++..+++.+.+. |+++..+||.|++..|.+++..|.....-||+||+++++|+|+|
T Consensus 304 L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999998765 57999999999999999999865 88999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHH
Q 011188 399 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 442 (491)
Q Consensus 399 ~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 442 (491)
.|++||++|+|.+..+|+||+||+.|.+..|.+++++++.+.+.
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 99999999999999999999999999999999999999988443
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-60 Score=477.32 Aligned_cols=363 Identities=36% Similarity=0.592 Sum_probs=323.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
+|+++++++.+++.+.+.||.+|+++|.++|+.++.++|+++++|||+|||++|++|+++++...+. .....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 122357899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
||++|+.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||||+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999998888877778889999999999999999888888999999999999999
Q ss_pred cCCcHHHHHHHHhhcCCCCceEEeccCCcH-HHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-hhhHHHHHHHH
Q 011188 247 DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKL 324 (491)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 324 (491)
+++|...+..+...++...|+++||||++. .+..+...++.++..+...... .....+.+.+.... ...+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999888999999999975 5778888888888877665443 33344555555544 35566667676
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 404 (491)
+... ...++||||++++.++.++..|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 6542 346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 405 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 405 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
+||+|.+...|+||+||+||.|..|.+++|++..|...+..+.+++.+
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888888876654
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=442.41 Aligned_cols=357 Identities=34% Similarity=0.553 Sum_probs=315.9
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 86 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 86 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
.+|++++ |+++++.++...||...||.|..+||.++.++|+++.++||||||++|++|++..+..+....+.....+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4577765 55999999999999999999999999999999999999999999999999999999554322222234689
Q ss_pred EEcccHHHHHHHHHHHHHhcCC-CCceEEEEECCccChhhHHHhhc-CCcEEEeChHHHHHHHhccC--ccccCccEEEE
Q 011188 164 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHN--TNLRRVTYLVL 239 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~-~~~~v~~~~~g~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lIi 239 (491)
|++|||||+.|+.+.+..|... .++.+.++.||.........+.. +++|+|+||++|.++++... +++..+.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988765 67889999999888777666654 57899999999999998743 44569999999
Q ss_pred ccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcc-cccceeeeeeccChhhHH
Q 011188 240 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLK-ANHAIRQHVDIVSESQKY 318 (491)
Q Consensus 240 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~ 318 (491)
||||++++++|...++.|++.+|+.+++-+||||...++.++.+..+.+|+.+.+...... .+..+...+..+....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776532 444566777788899999
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCC
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 396 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid 396 (491)
..++++|... ..+++|||.+|...++.....|... ...+..+||.|++..|..++..|.+..-.+|+|||++++|||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999985 3468999999999999999888765 568899999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHH
Q 011188 397 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA 443 (491)
Q Consensus 397 i~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 443 (491)
||++++||+||+|.+++.|+||+||++|+|+.|.+++|+.+.+..+.
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 99999999999999999999999999999999999999999655543
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-62 Score=434.55 Aligned_cols=369 Identities=30% Similarity=0.524 Sum_probs=347.2
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
-..|+++.|..+++..+.+.||..|.|+|+++||.++.|+|+++.|..|+|||.+|++|++..+... .+.-+++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999987653 24567899
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++||||||.|+.+.+.++++..++++...+||++....+-.+.+..+++|+||++++++.+++...++++.++|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 99999999999999999999999999999999999888888899999999999999999999888899999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
+++.+|.+.++.++..+++++|++++|||+|-.+..+...++.+|+.+..... .....+.|++.++.+..|..-|-.+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999887654 4556788999999999999988888
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 404 (491)
+..+.-+ +.|||||+...++.++..+.+.|+.+..+|+.|.++.|..++..|++|.++.||||+.+.+|||++++++||
T Consensus 317 fskLqIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 317 FSKLQIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHHhccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 8877654 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHH
Q 011188 405 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPEL 461 (491)
Q Consensus 405 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 461 (491)
+||.|.++++|+||+||.||.|.-|.++.+++-+|...+..+.+-|......+|+.+
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999999988888888654
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.7e-59 Score=473.44 Aligned_cols=378 Identities=37% Similarity=0.559 Sum_probs=331.6
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCC--CCCCCE
Q 011188 84 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPI 161 (491)
Q Consensus 84 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~--~~~~~~ 161 (491)
....|.++++++.+.++|.+.||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346789999999999999999999999999999999999999999999999999999999999987654211 112578
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
+|||+||++|+.|+.+.+..+....++.+..++||.....+...+. ..++|+|+||++|.+++......++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888899999999987776666654 458999999999999988888889999999999
Q ss_pred cccccccCCcHHHHHHHHhhcCC--CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 318 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 318 (491)
|+|++.+.+|...+..++..++. ..|++++|||++.++..++..++.++..+.+.... .....+.+.+..+...++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 99999999999999999988853 57999999999999999999999988877665544 3334456666666777788
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
..+..++... ...++||||++++.++.+++.|...++.+..+||++++++|.++++.|++|+++|||||+++++|||+|
T Consensus 324 ~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 324 KLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 8888877653 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhC--CCCCHHHHh
Q 011188 399 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG--QKVSPELAA 463 (491)
Q Consensus 399 ~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~l~~ 463 (491)
++++||++++|.|..+|+||+||+||.|++|.+++|++++|...+..+.+.+.... ...|.+|..
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999999999999998888899888876653 334555544
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-59 Score=432.13 Aligned_cols=368 Identities=31% Similarity=0.490 Sum_probs=333.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC-CCCCCCEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 164 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~~vli 164 (491)
.+|++++|++.+++++.+.||..||-+|+.+||.+++|+|+++.|.||||||.+|++|+++.+...... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 4556899999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCC--ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC-ccccCccEEEEcc
Q 011188 165 LAPTRELAVQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 241 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~--~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~-~~l~~~~~lIiDE 241 (491)
++||+|||.|++..+.++...+. +++.-+..+++.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999987644332 55555555555555556677789999999999999999876 6778899999999
Q ss_pred ccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHH
Q 011188 242 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 321 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 321 (491)
||.++..||...+..+...+|+..|.++||||+.+++..+.+.++.+|+.+.+...+......+.|+...+.+.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc-----------
Q 011188 322 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV----------- 390 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~----------- 390 (491)
..+++...-.++.|||+|+.+.|..|.-.|+..|++..+++|.++.+.|..++++|+.|-++++||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999987666679999999999999999999999999999999999999999999999999999999981
Q ss_pred ------------------------ccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 391 ------------------------AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 391 ------------------------~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
.++|||+.+|.+|+|||+|.+...|+||+||++|.+++|.++.|+.+.+......|
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 26899999999999999999999999999999999999999999999887766666
Q ss_pred HHHHHHh
Q 011188 447 ITILEEA 453 (491)
Q Consensus 447 ~~~l~~~ 453 (491)
...++..
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 6666553
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-57 Score=456.42 Aligned_cols=368 Identities=33% Similarity=0.592 Sum_probs=322.8
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..+|+++++++.+.+++.+.+|..|+|+|.++|+.+++++++++++|||||||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887532 23678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++|+++|+.|+.+.+..++....+.+..++|+.........+..+++|+|+||++|.+++......++++++||+||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988888888888998877777777777889999999999999888777889999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh-hhHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLVK 323 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ 323 (491)
+.+.+|...+..++..+++..|++++|||+++....+...++.++..+.+..... ....+.+.+..... ..+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887776655432 22334444433333 345566666
Q ss_pred HHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEE
Q 011188 324 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 403 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V 403 (491)
++... ...++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 261 ~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 66543 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCH
Q 011188 404 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 459 (491)
Q Consensus 404 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 459 (491)
|++++|.+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.+...-++.+.
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 99999999999999999999999999999999999999888887777655554443
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-58 Score=433.50 Aligned_cols=365 Identities=35% Similarity=0.555 Sum_probs=318.7
Q ss_pred cCCcccCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCC-CCCCCCCCEE
Q 011188 85 VKSFRDVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIV 162 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~v 162 (491)
-..|..+++++.+...|. .+++..||.+|.++||.+++|+|+++.++||||||++|++|+++.+.... ...+..|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 456889999999999997 47999999999999999999999999999999999999999999998754 3456679999
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCC-ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-CccccCccEEEEc
Q 011188 163 LVLAPTRELAVQIQQESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 240 (491)
Q Consensus 163 lil~Pt~~L~~q~~~~~~~~~~~~~-~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lIiD 240 (491)
||++||||||.|+++.+.++.+.+. +-...+.||.....+...++++++|+|+||++|.+++.+. .+.++++.+||+|
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999999876554 4557788999998899999999999999999999999874 5678899999999
Q ss_pred cccccccCCcHHHHHHHHhhcC-------------CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCC----------
Q 011188 241 EADRMLDMGFEPQIKKILSQIR-------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP---------- 297 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 297 (491)
|+|++++.||...+..|+..+. ...|.+++|||+.+.+.+++...+.+|..+..+..
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999999988772 23678999999999999999999999988872211
Q ss_pred --------------CcccccceeeeeeccChhhHHHHHHHHHHhhc---cCCeEEEEeCCcccHHHHHHHHHhC------
Q 011188 298 --------------DLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD------ 354 (491)
Q Consensus 298 --------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~------ 354 (491)
....+..+.|.+.+++..-++..|..+|.... +..++|||+.+.+.++.-+..|...
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 12334556777888888888888888887643 3458999999999999888887532
Q ss_pred ----------------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 011188 355 ----------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 418 (491)
Q Consensus 355 ----------------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr 418 (491)
+.++..+||+|++++|..+++.|...+..||+|||++++|+|+|+|.+||.||+|.++.+|+||
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 2457789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCcceEEEEeCcccHHHHHHHHHH
Q 011188 419 IGRTGRAGAKGTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 419 ~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 449 (491)
+||+.|.|.+|.+++|+.+.+.+++..|...
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999998876665544
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-55 Score=399.32 Aligned_cols=371 Identities=29% Similarity=0.488 Sum_probs=318.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCC
Q 011188 83 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 160 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 160 (491)
....+|+++.|.+++++.+..++|..|+.+|+.|+|.++.. +++|.++..|+|||.+|.+.+|.++.-. ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 34788999999999999999999999999999999999976 6899999999999999999999887642 2468
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-cCccccCccEEEE
Q 011188 161 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 239 (491)
Q Consensus 161 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIi 239 (491)
.+++|+|||+||.|+.+.+.+.+++.+++......+... ..-..+ ..+|+|+||+.+.+++.. ....+..++++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-~rG~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-KRGNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-ccCCcc--hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 899999999999999999999999988777666655411 000111 247999999999999887 6778899999999
Q ss_pred ccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeec-cChhhH
Q 011188 240 DEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI-VSESQK 317 (491)
Q Consensus 240 DEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k 317 (491)
|||+.|++. ||...-..|...++++.|++++|||+.+.+..++.....++..+.+...++... .+.|.+.. ....+|
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~-~IkQlyv~C~~~~~K 317 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD-NIKQLYVLCACRDDK 317 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc-chhhheeeccchhhH
Confidence 999998874 588888999999999999999999999999999999999999999988885554 45555544 456789
Q ss_pred HHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCC
Q 011188 318 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 397 (491)
Q Consensus 318 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 397 (491)
++.|.++...+.- ++.||||.++..|.+++..|...|+.+..+||+|...+|..++++|+.|..+|||+|++++||||+
T Consensus 318 ~~~l~~lyg~~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 318 YQALVNLYGLLTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHhhhhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 9999986665443 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC------ChhHHHHhhhhcccCCCcceEEEEeCcc-cHHHHHHHHHHHHHhCC-CCCHHHHh
Q 011188 398 KDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQ-KVSPELAA 463 (491)
Q Consensus 398 ~~~~~VI~~~~p~------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~-~~~~~l~~ 463 (491)
+.|++|||||+|. ++++|+||+||+||+|+.|.++-|+... +...+..|.+....... -.|..+.+
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 9999999999995 6899999999999999999999988765 66778888888855433 33444433
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-56 Score=426.19 Aligned_cols=396 Identities=34% Similarity=0.510 Sum_probs=348.6
Q ss_pred hhcCceEecCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHH
Q 011188 70 QQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 145 (491)
Q Consensus 70 ~~~~~~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l 145 (491)
+.+.+.+.|...|.|+.+|+++ .+...++.++...+|..|+|+|.+|+|.++.++++++|+|||+|||++|.+|++
T Consensus 116 k~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil 195 (593)
T KOG0344|consen 116 KSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPIL 195 (593)
T ss_pred hcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHH
Confidence 3456778899999999999984 688999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc--CCCCceEEEEECCccCh-hhHHHhhcCCcEEEeChHHHHH
Q 011188 146 VHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLID 222 (491)
Q Consensus 146 ~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~--~~~~~~v~~~~~g~~~~-~~~~~~~~~~~Iiv~T~~~l~~ 222 (491)
.++..........+-+++|+.|+++|+.|++.++.++. ...+..+..+....... .........++|+|.||.++..
T Consensus 196 ~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~ 275 (593)
T KOG0344|consen 196 QHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVG 275 (593)
T ss_pred HHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHH
Confidence 99988655455668899999999999999999999998 55555554444332221 2222233457999999999999
Q ss_pred HHhccC--ccccCccEEEEccccccccC-CcHHHHHHHHhhcC-CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCC
Q 011188 223 MLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 298 (491)
Q Consensus 223 ~l~~~~--~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
.+.... .++..+.++|+||+|++.+. .|..++..|++.+. ++..+-+||||++..++++++....++..+.++..+
T Consensus 276 ~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 276 LLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN 355 (593)
T ss_pred HhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecch
Confidence 888765 67899999999999999998 89999999988764 677888999999999999999999999999998887
Q ss_pred cccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHH-HhCCCceEEEcCCCCHHHHHHHHHHH
Q 011188 299 LKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLSEF 377 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~i~~~~~~~~r~~~~~~f 377 (491)
.......+..+....+..|...+.+++....+ .++|||+.+.+.|..|...| ...++++.++||+.++.+|++++++|
T Consensus 356 sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 356 SANETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred hHhhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 44433334445566778899999999998755 48999999999999999999 67789999999999999999999999
Q ss_pred hCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCC
Q 011188 378 KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKV 457 (491)
Q Consensus 378 ~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 457 (491)
+.|++.|||||+++++|+|+.+++.||+||.|.+...|+||+||+||+|+.|.+++||+..|...++.+.+.++..|-++
T Consensus 435 R~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ev 514 (593)
T KOG0344|consen 435 RIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEV 514 (593)
T ss_pred hccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhcc
Q 011188 458 SPELAAMGR 466 (491)
Q Consensus 458 ~~~l~~~~~ 466 (491)
|++++.|..
T Consensus 515 pe~~m~~~k 523 (593)
T KOG0344|consen 515 PEKIMGIKK 523 (593)
T ss_pred hHHHHhhhh
Confidence 999998875
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-56 Score=422.92 Aligned_cols=372 Identities=34% Similarity=0.484 Sum_probs=303.0
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCC----
Q 011188 80 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---- 154 (491)
Q Consensus 80 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~---- 154 (491)
..+..+..|.++.+|..++.+|..+||..|+++|...+|++..+ .|++..|.||||||++|-+|++..+.+....
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34556778999999999999999999999999999999999999 7999999999999999999999955442211
Q ss_pred ----CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc-
Q 011188 155 ----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT- 229 (491)
Q Consensus 155 ----~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~- 229 (491)
.....+..||++||||||.|+.+.+..+....++++..++||.....+.+.+...++|+|+||++|+.++.....
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 111233599999999999999999999999999999999999999999999999999999999999999987544
Q ss_pred --cccCccEEEEccccccccCCcHHHHHHHHhhcC-----CCCceEEeccCCcHH---------------------HHHH
Q 011188 230 --NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKE---------------------VEHL 281 (491)
Q Consensus 230 --~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~---------------------~~~~ 281 (491)
++.++.++|+||+|+|+..++...+..++..+. ..+|++.||||+.-. ++.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 577889999999999999998889998887775 457999999997432 1222
Q ss_pred HHHHc--cCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceE
Q 011188 282 ARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 359 (491)
Q Consensus 282 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~ 359 (491)
+.... ..|..+-..... .....+......++...|--.|..+|.. -.+++|||||+++.+..|+-.|+..+++..
T Consensus 415 mk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 22221 122222111111 1111111111122222222222222222 235899999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCccc
Q 011188 360 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 439 (491)
Q Consensus 360 ~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 439 (491)
.+|+.|.+.+|.+.+++|++....|||||+++++|+|||+|.|||||..|.+.+.|+||-||+.|++..|..++++.+.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 011188 440 ARFAKELITILEEAG 454 (491)
Q Consensus 440 ~~~~~~l~~~l~~~~ 454 (491)
...+..|..-|++..
T Consensus 572 ~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKE 586 (731)
T ss_pred hHHHHHHHHHHhhcc
Confidence 999999998887654
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-54 Score=395.43 Aligned_cols=370 Identities=34% Similarity=0.583 Sum_probs=339.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..+|++++|++.+++.++..||.+|+.+|+.||..+..|.|+++++++|+|||.+|.+++++.+.. ......+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999988743 234667999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHh-hcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
++|+++||.|+.+....++...++++..+.||.....+...+ ...++|+++||+++.+++....+....++++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999999998877554444 4458999999999999998887778889999999999
Q ss_pred ccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHH
Q 011188 244 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 323 (491)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 323 (491)
.++..+|..++..+...++++.|++++|||+|.++..+.+.++.+|..+.+...++. ...+.|.+..+..+.|...|.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999888754 5556676666666779999999
Q ss_pred HHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEE
Q 011188 324 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 403 (491)
Q Consensus 324 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~V 403 (491)
+.+ .-...+||||+++.++.+...|...++.+..+|+++.+.+|..+++.|+.|..+|||+|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 888 33579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHh
Q 011188 404 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAA 463 (491)
Q Consensus 404 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 463 (491)
|+|++|...++|+||+||+||+|++|.++.++++.+...++++.+++.-.-.++|....+
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 999999999999999999999999999999999999999999999988888888876544
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-54 Score=397.91 Aligned_cols=363 Identities=35% Similarity=0.569 Sum_probs=338.7
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
...|+.++|+..+.+++.+.||..|+|+|++.+|.++++++++..+-||||||.+|++|++.++.... ..+.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 56899999999999999999999999999999999999999999999999999999999999998742 34788999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++||++|+.|..+.++.++...++++.+++||....+++..+..++|||++||+++..+...-.+.++.+.||||||+++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887666667899999999999999
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
+..++|.+++.+++..++.+.|+++||||+|..+.++++.-+.+|..+.++-.. .....++..+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998866554 5556666677778889999999999
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 404 (491)
+......++++|||.++.+++.+...|+..|+.+..++|.+++.-|..-+.+|+.++..+||.|+++++|+|||-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 405 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 405 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
+||.|.+...|+||+||+.|+|+.|.+|.++.+++..++-+|.-++.+
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 999999999999999999999999999999999988887777666544
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.8e-52 Score=437.40 Aligned_cols=344 Identities=20% Similarity=0.280 Sum_probs=271.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 92 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 92 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
.+++.+.+.|.+.||.+|+++|.++|+.+++|+|+++++|||||||++|++|++..+..++ +.++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 3889999999999999999999999999999999999999999999999999999987632 6789999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc----CccccCccEEEEcccccccc
Q 011188 172 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 172 ~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lIiDEah~~~~ 247 (491)
+.|+.+.++++. ..++++..+.|+.+. .+...+..+++|+|+||++|...+... ...++++++||+||||.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 446788777777654 444556677899999999986533221 12378899999999999876
Q ss_pred CCcHHHHHHHHhh-------cCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeecc--------
Q 011188 248 MGFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-------- 312 (491)
Q Consensus 248 ~~~~~~~~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 312 (491)
.|+..+..++.. ....+|++++|||+++..+ ++..++..+..+. .... .........+...
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccc
Confidence 367665555444 3467899999999988754 6777777775543 2221 1111111111100
Q ss_pred --------ChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHH
Q 011188 313 --------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSE 376 (491)
Q Consensus 313 --------~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~i~~~~~~~~r~~~~~~ 376 (491)
....+...+..++. .+.++||||+|++.++.++..|++. +..+..+||++++++|.+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 01233444444444 3568999999999999999988753 5678899999999999999999
Q ss_pred HhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc--cHHHHHHHHHHH
Q 011188 377 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITIL 450 (491)
Q Consensus 377 f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l 450 (491)
|++|++++||||+++++|||||++++||+++.|.+..+|+||+||+||.|+.|.++++...+ |...+......+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988743 443444444343
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.1e-50 Score=416.68 Aligned_cols=342 Identities=23% Similarity=0.329 Sum_probs=264.4
Q ss_pred Cccc--CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 87 SFRD--VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 87 ~f~~--~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
.|.. ++....+...++. +|+..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4554 3444555555553 68999999999999999999999999999999999999999854 45699
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhh------cCCcEEEeChHHHHH--HHhcc---Ccccc
Q 011188 164 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESH---NTNLR 232 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~------~~~~Iiv~T~~~l~~--~l~~~---~~~l~ 232 (491)
||+|+++|+.++...+... ++....+.++.....+...+. ...+|+|+||++|.. .+... .....
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998666666553 478888888877655543332 357999999999852 12211 11134
Q ss_pred CccEEEEccccccccCC--cHHHHHHH--HhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeee
Q 011188 233 RVTYLVLDEADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 308 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
.+.+|||||||++.+|+ |++.+..+ +....+..+++++|||++..+.+.....+.......+.... ...++..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf--~RpNL~y- 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF--NRPNLWY- 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc--CccceEE-
Confidence 58899999999999987 77877764 44444678899999999988877555544332222222211 1112221
Q ss_pred eeccChh-hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEE
Q 011188 309 VDIVSES-QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 387 (491)
Q Consensus 309 ~~~~~~~-~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLva 387 (491)
.++... .....+..++.....+.+.||||.+++.|+.+++.|+..|+.+..+||+|++.+|..++++|..|+++||||
T Consensus 658 -~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 658 -SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred -EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 222222 224556666665444568999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 388 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 388 T~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
|+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|++..|......++
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987776655554
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-51 Score=396.70 Aligned_cols=355 Identities=30% Similarity=0.471 Sum_probs=320.5
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC
Q 011188 78 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 157 (491)
Q Consensus 78 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 157 (491)
++..+.....|+++.|..+++..|...+|..|+++|..|||+++.+-|+|+++..|+|||++|.+.++..+..+ .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----S 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----c
Confidence 44556777889999999999999999999999999999999999999999999999999999998888776543 3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcC-CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccE
Q 011188 158 DGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 236 (491)
Q Consensus 158 ~~~~vlil~Pt~~L~~q~~~~~~~~~~-~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 236 (491)
..++.+||+|||++|.|+.+.+.++++ ..++++.++.||+........+. .++|+|+||+++..+++.+.++.+.+.+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeE
Confidence 478899999999999999999999986 45799999999998776665554 4789999999999999999999999999
Q ss_pred EEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChh
Q 011188 237 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES 315 (491)
Q Consensus 237 lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (491)
+|+||||.+.+ ..|...+..|+..++..+|++.+|||.|..+...+..++.+|..+.+...+ .....+.|++..++..
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCC
Confidence 99999999998 459999999999999999999999999999999999999999999988876 5556678887766543
Q ss_pred --------hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEE
Q 011188 316 --------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 387 (491)
Q Consensus 316 --------~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLva 387 (491)
.|.+.|-.++..+.- .++||||+....|+-++.+|...|++|.+|.|.|++.+|..+++.+++-..+|||+
T Consensus 250 nnsveemrlklq~L~~vf~~ipy-~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPY-VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCch-HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 467777777776643 47999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 388 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 388 T~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|+..++|||-++++.||+.|+|-+..+|.||||||||+|..|.+++|+....+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987644
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.7e-50 Score=405.84 Aligned_cols=326 Identities=26% Similarity=0.368 Sum_probs=255.1
Q ss_pred HCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 103 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 103 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999998853 456899999999999999988875
Q ss_pred cCCCCceEEEEECCccChhhH---HHh-hcCCcEEEeChHHHHHHH--hccCccccCccEEEEccccccccCC--cHHHH
Q 011188 183 GASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDML--ESHNTNLRRVTYLVLDEADRMLDMG--FEPQI 254 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~l--~~~~~~l~~~~~lIiDEah~~~~~~--~~~~~ 254 (491)
+ +.+..+.++....+.. ..+ ....+|+++||+++.... ........++++|||||||++.+++ |.+.+
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 4 6666666665443222 222 334799999999975321 1111145789999999999999886 66666
Q ss_pred HHH--HhhcCCCCceEEeccCCcHHHHHHHHHHcc--CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhcc
Q 011188 255 KKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD 330 (491)
Q Consensus 255 ~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 330 (491)
..+ +....++.+++++|||+++.+.......+. .+..+. .... ..++...+.. ........+...+....+
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~-~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC-TSFD---RPNLYYEVRR-KTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe-CCCC---CCCcEEEEEe-CCccHHHHHHHHHHHhcC
Confidence 554 233336788999999999877655544432 333332 2211 1112111111 111345566666665555
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG 410 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~ 410 (491)
+.++||||++++.++.++..|+..++.+..+|+++++++|..+++.|++|+++|||||+++++|||+|++++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHH
Q 011188 411 SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 448 (491)
Q Consensus 411 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 448 (491)
|.+.|+||+||+||.|..|.|++|+++.|...++.++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988776666554
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=379.88 Aligned_cols=351 Identities=29% Similarity=0.457 Sum_probs=289.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhc---------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 97 VMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 97 ~~~~l~~~~~~~~~~~Q~~~i~~i~~---------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
+.+++.++++..+.|+|...+|+++. .+|+.+.||||||||++|.+|+++.+...+ .+.-+++||+|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVivP 223 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVIVP 223 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEEee
Confidence 34458899999999999999999863 478999999999999999999999988753 34578999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcC-----CcEEEeChHHHHHHHhc-cCccccCccEEEEcc
Q 011188 168 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 241 (491)
Q Consensus 168 t~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-----~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDE 241 (491)
|++|+.|+++.|.++....++.|+.+.|..+.......+... .||+|+||++|.+++.+ ..++++++.++||||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEech
Confidence 999999999999999999999999999888877777766543 38999999999999984 678899999999999
Q ss_pred ccccccCCcHHHHHHHHhhcC----------------------------------CCCceEEeccCCcHHHHHHHHHHcc
Q 011188 242 ADRMLDMGFEPQIKKILSQIR----------------------------------PDRQTLYWSATWPKEVEHLARQYLY 287 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~ 287 (491)
||+|++..|...+-.++..+. +..+.+.+|||+..+-.++...-+.
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 999998776665555544432 1224678889987777777777777
Q ss_pred CCcEEEecC---CCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHH----hCCCceEE
Q 011188 288 NPYKVIIGS---PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALS 360 (491)
Q Consensus 288 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~----~~~~~~~~ 360 (491)
.|....+.. ..+..+..+.+.........|...+..++... +..++|+|+++.+.+..++..|+ +..+++..
T Consensus 384 ~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~ 462 (620)
T KOG0350|consen 384 IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSE 462 (620)
T ss_pred CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhh
Confidence 775444432 22233444555555555556677777777664 44689999999999999999887 33566777
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 361 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 361 i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
+.|.++.+.|.+.+++|..|++++|||+|+++||+|+.+++.||+||+|.+..+|+||+||++|+|+.|.|+++.+..+.
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q 011188 441 RFAKELITILEE 452 (491)
Q Consensus 441 ~~~~~l~~~l~~ 452 (491)
+...++++....
T Consensus 543 r~F~klL~~~~~ 554 (620)
T KOG0350|consen 543 RLFSKLLKKTNL 554 (620)
T ss_pred hHHHHHHHHhcc
Confidence 877766665544
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.9e-48 Score=399.81 Aligned_cols=332 Identities=23% Similarity=0.372 Sum_probs=255.0
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 94 PDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 94 ~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
++...+.|++ .||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ...+||++|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444443 69999999999999999999999999999999999999999854 34589999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh-cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 248 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~ 248 (491)
.|+.+.+..++ +.+..+.++........ .+. ...+++++||+++........+...++++|||||||++.++
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999988764 56666666554433322 222 34789999999986422112233457899999999999987
Q ss_pred C--cHHHHHHH--HhhcCCCCceEEeccCCcHHHHHHHHHHc--cCCcEEEecCCCcccccceeeeeeccChhhHHHHHH
Q 011188 249 G--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 322 (491)
Q Consensus 249 ~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 322 (491)
+ |.+.+..+ +....++.+++++|||+++.........+ .+|... ..... ..++. +.......+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcce--eeeeeccchHHHHH
Confidence 6 66665544 22223578899999999887655433333 233322 22211 11111 12222333455566
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
..+... .+.++||||+++++|+.++..|+..++.+..+|+++++++|..+++.|+.|+++|||||+++++|||+|++++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 665543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
||+|++|.|.+.|+||+||+||.|..|.|++|+++.|...++.++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876655443
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-47 Score=406.97 Aligned_cols=336 Identities=22% Similarity=0.293 Sum_probs=261.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.|+++++|+.+++.+.+.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|++..+.. +.++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7789999999999999999999999988854 6689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc
Q 011188 166 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~ 245 (491)
+|+++||.|+.+.+.++.. .++++..++|+...... .....+|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 47889999988754332 2245799999999998888766566789999999999999
Q ss_pred ccCCcHHHHHHHHhhc---CCCCceEEeccCCcHHHHHHHHHHccCC-------cEEEe--cCCCcccccceeeeeeccC
Q 011188 246 LDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNP-------YKVII--GSPDLKANHAIRQHVDIVS 313 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~ 313 (491)
.+.+++..++.++..+ .+..|++++|||+++ ..+++.++.... +.+.. .......... .+ ....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~--~~~~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQ--REVE 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-cc--ccCC
Confidence 9888888888776654 477899999999976 344544432221 11110 0000000000 00 0011
Q ss_pred hhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCC------------------------------------Cc
Q 011188 314 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG------------------------------------WP 357 (491)
Q Consensus 314 ~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------~~ 357 (491)
...+...+..++..+..++++||||++++.|+.++..|.... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 111112222222233456799999999999999988875421 35
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cC-----CCCChhHHHHhhhhcccCCCc
Q 011188 358 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-----FPGSLEDYVHRIGRTGRAGAK 428 (491)
Q Consensus 358 ~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~-----~p~s~~~~~Qr~GR~gR~g~~ 428 (491)
+..+|+++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|.||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999996 65 588999999999999999876
Q ss_pred --ceEEEEeCcc
Q 011188 429 --GTAYTFFTAA 438 (491)
Q Consensus 429 --g~~~~~~~~~ 438 (491)
|.++++....
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8899888664
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5e-47 Score=394.85 Aligned_cols=320 Identities=24% Similarity=0.391 Sum_probs=255.7
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.+.+..++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999998853 3458999999999999999988864
Q ss_pred CCCCceEEEEECCccChhhHH---H-hhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC--cHHHHHHH
Q 011188 184 ASSKIKSTCIYGGVPKGPQVR---D-LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 257 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~---~-~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~--~~~~~~~i 257 (491)
+.+..+.++........ . .....+|+++||++|............++++|||||||++.+++ |++.+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 66777777665443322 1 23458999999999865333333445689999999999999876 77766655
Q ss_pred H---hhcCCCCceEEeccCCcHHHHHHHHHHcc--CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCC
Q 011188 258 L---SQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 332 (491)
Q Consensus 258 ~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 332 (491)
. ..+ +..+++++|||++..+.......+. ++..+. .... ..++ .+.......+...+.+.+.... +.
T Consensus 154 ~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~---r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 154 GSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFI-TSFD---RPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC---CCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence 3 334 3456999999999887766555553 233222 2111 1112 1222233456667777777643 56
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCCh
Q 011188 333 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 412 (491)
Q Consensus 333 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~ 412 (491)
++||||++++.++.+++.|...++++..+|++|+.++|..+++.|..|+++|||||+++++|||+|++++||++++|.|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 413 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 413 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
+.|.|++||+||.|..+.|++++++.|......+
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999998776554443
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.9e-46 Score=402.04 Aligned_cols=343 Identities=22% Similarity=0.268 Sum_probs=254.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCC-CCCCCEEEEEcccHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTREL 171 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~~vlil~Pt~~L 171 (491)
+++.+.+.+.+ +|..|+|+|.++++.+++|+|++++||||||||++|++|++.++....... ..++.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 788999999999999999999999999999999999999999887532111 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc--cccCccEE
Q 011188 172 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 237 (491)
Q Consensus 172 ~~q~~~~~~~-------~----~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--~l~~~~~l 237 (491)
++|+.+.+.. + +... ++++...+|+.........+.+.++|+|+||++|..++.+... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 2 2333 6788999999887777777777899999999999877765432 47889999
Q ss_pred EEccccccccCCcHHHHHHHH----hhcCCCCceEEeccCCcHHHHHHHHHHccC-----CcEEEecCCCcccccceeee
Q 011188 238 VLDEADRMLDMGFEPQIKKIL----SQIRPDRQTLYWSATWPKEVEHLARQYLYN-----PYKVIIGSPDLKANHAIRQH 308 (491)
Q Consensus 238 IiDEah~~~~~~~~~~~~~i~----~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 308 (491)
|+||+|.+.+..++..+...+ ....+..|++++|||+++ ...++..+... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 999999999876665554443 333467899999999976 34444443321 21111111110111111100
Q ss_pred e-----eccChhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhC------CCceEEEcCCCCHHHHHHHHHH
Q 011188 309 V-----DIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSE 376 (491)
Q Consensus 309 ~-----~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~i~~~~~~~~r~~~~~~ 376 (491)
. ...........+...+.. +..+.++||||+|+..|+.++..|++. +..+..+||++++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 0 001111222333333333 234568999999999999999999863 4679999999999999999999
Q ss_pred HhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC-CCcceEEEEeCc
Q 011188 377 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 437 (491)
Q Consensus 377 f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~ 437 (491)
|++|+++|||||+++++|||+|++++||+++.|.+..+|+||+||+||. |..+.++++...
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999986 334445555443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-46 Score=394.24 Aligned_cols=339 Identities=20% Similarity=0.262 Sum_probs=261.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
+|+++++++.+.+.+++.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++... +.++|+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 578889999999999999999999999999986 78999999999999999999999999887652 5689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc
Q 011188 166 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~ 245 (491)
+|+++|+.|+.+.+.++. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998874 457899999998765432 2345799999999998888766666889999999999999
Q ss_pred ccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccc-cceeeeeeccChh--hH-HHHH
Q 011188 246 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKAN-HAIRQHVDIVSES--QK-YNKL 321 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~k-~~~l 321 (491)
.+.+++..++.++..+....|++++|||+++ ..+++.++ ....... ........ ....+........ .+ ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl-~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWL-NAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh-CCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 9888999999999999889999999999976 45566543 3222110 00000000 0011111111111 01 0111
Q ss_pred HHHH-HhhccCCeEEEEeCCcccHHHHHHHHHh---------------------------------CCCceEEEcCCCCH
Q 011188 322 VKLL-EDIMDGSRILIFMDTKKGCDQITRQLRM---------------------------------DGWPALSIHGDKSQ 367 (491)
Q Consensus 322 ~~~l-~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------------------------~~~~~~~i~~~~~~ 367 (491)
...+ ..+..++++||||++++.|+.++..|.. ....+..+|+++++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 1222 2223467899999999999887766632 12358899999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE-------cCCCC-ChhHHHHhhhhcccCC--CcceEEEEeCc
Q 011188 368 AERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------YDFPG-SLEDYVHRIGRTGRAG--AKGTAYTFFTA 437 (491)
Q Consensus 368 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~-------~~~p~-s~~~~~Qr~GR~gR~g--~~g~~~~~~~~ 437 (491)
++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.++++...
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999994 44433 5779999999999975 56899999876
Q ss_pred cc
Q 011188 438 AN 439 (491)
Q Consensus 438 ~~ 439 (491)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.7e-44 Score=381.16 Aligned_cols=351 Identities=20% Similarity=0.219 Sum_probs=263.7
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEE
Q 011188 93 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 165 (491)
Q Consensus 93 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 165 (491)
.+..+.+.+.. .+| +|||+|.+||+.++++ +|.++++|||+|||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 45566666655 466 7999999999999875 689999999999999999999888765 6789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEcc
Q 011188 166 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 241 (491)
Q Consensus 166 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDE 241 (491)
+||++||.|+++.+.++....++++..++++...... ...+.. .++|+|+||..+ .....+.+++++|+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999999887788888888887654333 233334 489999999433 2355678999999999
Q ss_pred ccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHH
Q 011188 242 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 321 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 321 (491)
+|++ +......+..+++..++++||||+.+....+......++..+...... ...+...+...... ...
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~---~i~ 650 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPE---LVR 650 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHH---HHH
Confidence 9994 334456667777889999999998665555544444455444322211 12233333222111 111
Q ss_pred HHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 322 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
..++.++..+++++|||++++.++.+++.|++. ++++..+||+|++.+|..++++|++|+.+|||||+++++|||+|+
T Consensus 651 ~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 651 EAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 223344556779999999999999999999874 788999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeCccc--HHHHHHHHHHHHHhCC---CCCHHHHhhccCC
Q 011188 400 VKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEAGQ---KVSPELAAMGRGA 468 (491)
Q Consensus 400 ~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~l~~~~~~~ 468 (491)
+++||+++.|. +..+|.||+||+||.|+.|.|++++.+.+ .+...+-++.+++... -+.-.+.+|.-..
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg 805 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRG 805 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC
Confidence 99999999865 67899999999999999999999987653 2334444444444322 3333444444333
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=382.80 Aligned_cols=331 Identities=21% Similarity=0.278 Sum_probs=253.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
.|+++++++.+++.+.+.++. |+++|.++++.+.+++++++++|||||||+++.++++..+.. +.++|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577889999999999998875 999999999999999999999999999999999999887765 56799999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
|+++||.|+++.+.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 456888888887654322 23467999999999988887766668899999999999999
Q ss_pred cCCcHHHHHHHHhh---cCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee-----ccC-hhhH
Q 011188 247 DMGFEPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-----IVS-ESQK 317 (491)
Q Consensus 247 ~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~k 317 (491)
+.+++..++.++.. ++++.|+|++|||+++ ..+++.++....+... . ....+...+. ... ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~--~----r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSN--F----RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCC--C----CCCCeEEEEEecCeeeecccccc
Confidence 88888877777654 4578899999999976 4556554432211100 0 0111110000 010 1111
Q ss_pred HHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhC-------------------------CCceEEEcCCCCHHHHH
Q 011188 318 YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-------------------------GWPALSIHGDKSQAERD 371 (491)
Q Consensus 318 ~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------~~~~~~i~~~~~~~~r~ 371 (491)
...+..++.+ ..+++++||||++++.++.++..|... ...+..+|+++++++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 1123344444 345679999999999999999888643 12467899999999999
Q ss_pred HHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcC---------CCCChhHHHHhhhhcccCCC--cceEEEEeCcc
Q 011188 372 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD---------FPGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 438 (491)
Q Consensus 372 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~---------~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 438 (491)
.+++.|++|.++|||||+++++|+|+|+..+|| .+ .|.+..+|.||+|||||.|. .|.++++....
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 999999999999999999999999999865544 33 25688999999999999985 46787776543
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.6e-44 Score=370.64 Aligned_cols=313 Identities=21% Similarity=0.257 Sum_probs=242.8
Q ss_pred CCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE-EEEEcccHHHHHHHHHHHHH
Q 011188 104 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI-VLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~-vlil~Pt~~L~~q~~~~~~~ 181 (491)
.||. |+|||.++++.++.|+ ++++++|||||||.++.++++.. .. ....++ +++++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5776 9999999999999998 57778999999998765444422 11 112344 45577999999999999998
Q ss_pred hcCCC-----------------------CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc---------
Q 011188 182 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 229 (491)
Q Consensus 182 ~~~~~-----------------------~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--------- 229 (491)
+++.+ ++++..++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 88654 4889999999999999999999999999995 44444333
Q ss_pred -------cccCccEEEEccccccccCCcHHHHHHHHhhc--CCC---CceEEeccCCcHHHHHHHHHHccCCcEEEecCC
Q 011188 230 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPD---RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 297 (491)
Q Consensus 230 -------~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 297 (491)
.+.+++++|+|||| ++++|...+..|++.+ ++. .|+++||||++.++.++...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6788999999999964 332 699999999998888888888777766555443
Q ss_pred CcccccceeeeeeccChhhHHHHHHHHHHhh--ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHH----
Q 011188 298 DLKANHAIRQHVDIVSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD---- 371 (491)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~---- 371 (491)
.. ....+.+.+ ..+...|...+...+... ..++++||||||++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223334432 333444444443333221 2456899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhC----CC-------CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcc-eEEEEeC
Q 011188 372 -WVLSEFKA----GK-------SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG-TAYTFFT 436 (491)
Q Consensus 372 -~~~~~f~~----g~-------~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g-~~~~~~~ 436 (491)
.++++|++ ++ ..|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+ ..+.++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 78999987 44 679999999999999986 899988777 689999999999999864 3355553
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.6e-44 Score=365.58 Aligned_cols=338 Identities=25% Similarity=0.308 Sum_probs=272.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
+++.+.+.+... |.+|||.|.+|||.+.+|+|+|+.||||||||+++.+|++..+..........+-.+|+++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788899998887 9999999999999999999999999999999999999999999886422334568899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc--CccccCccEEEEccccccccCCc
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
+.+...+...+...++.+.+.+|+++..+..+...+.+||+|+||++|.-++... ...+.++.++|+||+|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999988888888899999999999997777653 23578999999999999887665
Q ss_pred HHHHHHHHhhc---CCCCceEEeccCCcHHHHHHHHHHccC--CcEEEecCCCcccccceeeeeecc-------ChhhHH
Q 011188 251 EPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIV-------SESQKY 318 (491)
Q Consensus 251 ~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~k~ 318 (491)
+.++.-.+..+ .+..|.|++|||..+ ..+.++.+... +..++.... .....+.-..... ......
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHHHH
Confidence 55444333332 238999999999974 55666666555 333332222 1222221111111 112233
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCC-CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCC
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 397 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi 397 (491)
..+.+++++ ...+|||+||+..++.++..|++.+ ..+..+||+++.++|..+.++|++|+.+++|||+.++-|||+
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 344444443 4579999999999999999999886 789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhhhcccC-CCcceEEEEeCc
Q 011188 398 KDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 437 (491)
Q Consensus 398 ~~~~~VI~~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~~~ 437 (491)
.+++.||++..|.+...++||+||+|+. +....++++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999985 444566666555
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-43 Score=367.20 Aligned_cols=347 Identities=20% Similarity=0.250 Sum_probs=253.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc
Q 011188 95 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 168 (491)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 168 (491)
..+.+.+...--++||++|.++++.+.++ .+.++++|||||||++|++|++..+.. +.+++|++||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 34444454433348999999999999876 379999999999999999999887754 7789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 169 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 169 ~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
++||.|+++.++++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.+++++|+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999998888999999999874332 334444 48999999987743 34577899999999998
Q ss_pred cccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 245 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
+. ......+......+++++||||+.+....+.. ..+.....+.... .....+...+.. .. +...+.+.
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~~--~~-~~~~~~~~ 463 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVIP--DS-RRDEVYER 463 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEeC--cc-cHHHHHHH
Confidence 63 22333444445568999999998654433332 2222222222111 112223333222 22 22333333
Q ss_pred H-HhhccCCeEEEEeCCcc--------cHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 325 L-EDIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 325 l-~~~~~~~~~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
+ +....+.+++|||+..+ .+..+++.|.+. ++++..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 3 33455679999999654 345667777665 468999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhc
Q 011188 394 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMG 465 (491)
Q Consensus 394 Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~ 465 (491)
|||+|++++||+++.|. ..+.+.||+||+||.|..|.|++++.....+.....++.+++...-+.-.-.++.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~ 616 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLE 616 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHh
Confidence 99999999999999986 5788999999999999999999999654334455556666665444332233444
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-46 Score=319.08 Aligned_cols=335 Identities=29% Similarity=0.519 Sum_probs=294.8
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
..-|.++-+.+++++++..+||..|...|.++||...-|-|++++|..|.|||.+|.++.++++.- ......+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-----v~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-----VDGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-----CCCeEEEEE
Confidence 345788889999999999999999999999999999999999999999999999999998888653 223567999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC-CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc
Q 011188 165 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 243 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah 243 (491)
+|+||+||.|+.+++.+|.+.. ++++.+.+||.........+.+-++|+|+||++++.+..+..+++++++.+|+|||+
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 9999999999999999887754 589999999999988888888888999999999999999999999999999999999
Q ss_pred ccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHH
Q 011188 244 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 322 (491)
Q Consensus 244 ~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 322 (491)
.|+.. +.+..+.++.+..+...|+.++|||++.++...++.++.+|..+.++.......+.++|++....+..|...+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 88753 46778888999999999999999999999999999999999999998887777788899988889999999999
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCE
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
++|..+.- ++++||+.+... | + | ..+ +|||+++++|+||..++.
T Consensus 276 dLLd~LeF-NQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 276 DLLDVLEF-NQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhhhh-cceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCccccee
Confidence 99887654 479999988654 0 0 2 123 899999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc-cHHHHHHHHHHHHHhCCCCCHH
Q 011188 403 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 460 (491)
Q Consensus 403 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 460 (491)
||+||.|.+..+|.||+|||||.|.+|.+++|++.. +...+..+.+-.+-...++|++
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999999998864 6666777776666666677766
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.3e-43 Score=378.00 Aligned_cols=352 Identities=18% Similarity=0.178 Sum_probs=265.7
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 94 PDYVMQEI-SKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 94 ~~~~~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
+..+.+.+ ...+| +||+.|.+||+.++.+ .|++++++||+|||.+|+.+++..+.. +++++||+
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLv 656 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLV 656 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEe
Confidence 34444444 45566 8999999999999986 789999999999999998887766543 78899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHh---h-cCCcEEEeChHHHHHHHhccCccccCccEEEEccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 242 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~---~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEa 242 (491)
||++||.|+++.+.+.....++++..++++.+..++...+ . ..++|+|+||+.+ . ....+.+++++||||+
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEech
Confidence 9999999999999987666678888888887765554333 2 3589999999644 2 3455778999999999
Q ss_pred cccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHH
Q 011188 243 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 322 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 322 (491)
|++. + .....+..++++.|+++||||+.+....++...+.++..+...... ...+.+.+...... ....
T Consensus 732 hrfG---~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~---~~k~ 800 (1147)
T PRK10689 732 HRFG---V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSL---VVRE 800 (1147)
T ss_pred hhcc---h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcH---HHHH
Confidence 9962 2 2345567778899999999998777777777777777665443221 12233333222211 1122
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
.++.++..+++++||||+++.++.+++.|++. +.++..+||+|++++|..++.+|++|+++|||||+++++|||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v 880 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccC
Confidence 34444555679999999999999999999886 6789999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC-CChhHHHHhhhhcccCCCcceEEEEeCccc--HHHHHHHHHHHHHhCC---CCCHHHHhhccCCCC
Q 011188 401 KYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEAGQ---KVSPELAAMGRGAPP 470 (491)
Q Consensus 401 ~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~l~~~~~~~~~ 470 (491)
++||..+.+ .+..+|.||+||+||.|+.|.|++++.+.. .+.+..-++.+++... -+.-.+.||.-.+.|
T Consensus 881 ~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g 956 (1147)
T PRK10689 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 (1147)
T ss_pred CEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCc
Confidence 999965543 356789999999999999999998886542 2334444455554433 444555666554433
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.9e-42 Score=360.73 Aligned_cols=346 Identities=19% Similarity=0.257 Sum_probs=250.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 97 VMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 97 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
+.+.+...+| +||++|.++++.++++ .+.++++|||||||++|++|++..+.. +.+++|++||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHHH
Confidence 3445556677 8999999999999875 258999999999999999999887654 678999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhh-cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 171 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 171 L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
||.|+++.++++....++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.+++++|+||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 99999999999988888999999998865542 33333 347999999987743 3456789999999999864
Q ss_pred cCCcHHHHHHHHhhcC--CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 247 DMGFEPQIKKILSQIR--PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 247 ~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
.. +...+..... ..+++++||||+.+....+.. ..+.....+.... .....+...+ .....+ ..+...
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~--~~~~~~-~~~~~~ 440 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVL--IKHDEK-DIVYEF 440 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEE--eCcchH-HHHHHH
Confidence 32 2222333322 267899999997553332221 1211111111111 1112222222 222222 344444
Q ss_pred HH-hhccCCeEEEEeCCcc--------cHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 325 LE-DIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 325 l~-~~~~~~~~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
+. .+..+.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 43 3456678999999864 455677777653 678999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhcc
Q 011188 394 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 466 (491)
Q Consensus 394 Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 466 (491)
|||+|++++||+++.|. +...+.||+||+||.|++|.|++++...........++.+.+...-+.-.-.++.-
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~ 594 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL 594 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc
Confidence 99999999999999986 68899999999999999999999995444444444556666655554433344443
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.5e-43 Score=344.85 Aligned_cols=324 Identities=25% Similarity=0.383 Sum_probs=255.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|+..+++-|.++|..+++++|+++.+|||.||+++|.+|++.. ...+|||+|..+|...+.+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAAG 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999865 2258999999999999888888875
Q ss_pred CCCCceEEEEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC--cHHHHHHH
Q 011188 184 ASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 257 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~--~~~~~~~i 257 (491)
+.+..+.+..+..+. ...+.. ..++++-+|++|..--....+.-..+.+++|||||++.+|| |++.+..+
T Consensus 82 ----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 82 ----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 666666666544333 223333 37999999999854322222224578899999999999997 99888876
Q ss_pred HhhcC--CCCceEEeccCCcHHHHHHHHHHccC-CcEEEecCCCcccccceeeeeecc-ChhhHHHHHHHHHHh--hccC
Q 011188 258 LSQIR--PDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLED--IMDG 331 (491)
Q Consensus 258 ~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~--~~~~ 331 (491)
-.... ++.+++++|||.++.+.......+.. ...+...+.+ ..++...+... ....+.. ++.+ ....
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~----fi~~~~~~~~ 230 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLA----FLATVLPQLS 230 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHH----HHHhhccccC
Confidence 44332 47899999999988887766555543 3233333322 11222111111 1223333 3332 3345
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCC
Q 011188 332 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 411 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s 411 (491)
+..||||.|++.++.+++.|+..|+.+..+|++|+.++|..+.++|..++.+|+|||.+++.|||-|++++||||++|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHH
Q 011188 412 LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 412 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 449 (491)
.+.|.|-+|||||.|....|++|+.+.|......+++.
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999998776665555
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-41 Score=322.11 Aligned_cols=323 Identities=24% Similarity=0.276 Sum_probs=248.5
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..+++.||......++.+ |++++.|||.|||+++++-+..++... +.++|+++||+-|+.|.++.+.++...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 348899999999888875 999999999999999999888888774 338999999999999999999998877
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
..-.++.++|..........+. ...|+|+||+.+.+-+..+..++.++.++||||||+.....-...+.+......+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 7778889999887765555444 459999999999999999999999999999999999776554455555555556788
Q ss_pred ceEEeccCCcHHHH---HHHHHHccCCcEEEecC----------------------------------------------
Q 011188 266 QTLYWSATWPKEVE---HLARQYLYNPYKVIIGS---------------------------------------------- 296 (491)
Q Consensus 266 ~~i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~---------------------------------------------- 296 (491)
.++++|||+..+.+ +.++.+....+.+....
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999543322 22222221111111000
Q ss_pred -----CC-----cc----------cc--cc----------------------------eeee------------------
Q 011188 297 -----PD-----LK----------AN--HA----------------------------IRQH------------------ 308 (491)
Q Consensus 297 -----~~-----~~----------~~--~~----------------------------~~~~------------------ 308 (491)
.. +. .. .. ..++
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00 00 00 00 0000
Q ss_pred -----------------eeccChhhHHHHHHHHHHhhc---cCCeEEEEeCCcccHHHHHHHHHhCCCceE--EE-----
Q 011188 309 -----------------VDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPAL--SI----- 361 (491)
Q Consensus 309 -----------------~~~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~--~i----- 361 (491)
........|...+.+++++.. ++.++|||++.+++++.+.+.|.+.+..+. ++
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000011235555566666543 345999999999999999999999887763 33
Q ss_pred --cCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 362 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 362 --~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
..+|+|.++.+++++|++|+++|||||+++++|+|||+++.||+|++..|+..++||.||+||. +.|.+++++++.
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999998 899999999987
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.5e-41 Score=366.47 Aligned_cols=295 Identities=23% Similarity=0.291 Sum_probs=223.5
Q ss_pred EEcCCCChHHHHHHHHHHHHhhcCCCC-----CCCCCCEEEEEcccHHHHHHHHHHHHHh-----------c-CCCCceE
Q 011188 128 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKF-----------G-ASSKIKS 190 (491)
Q Consensus 128 i~~~TGsGKT~~~~~~~l~~l~~~~~~-----~~~~~~~vlil~Pt~~L~~q~~~~~~~~-----------~-~~~~~~v 190 (491)
|++|||||||++|.+|++..+..++.. ...++.++|||+|+++|++|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1234688999999999999999988641 1 1346889
Q ss_pred EEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-CccccCccEEEEccccccccCCcH----HHHHHHHhhcCCCC
Q 011188 191 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFE----PQIKKILSQIRPDR 265 (491)
Q Consensus 191 ~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lIiDEah~~~~~~~~----~~~~~i~~~~~~~~ 265 (491)
...+|+++..++...+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++ ..+.++...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888777777778999999999998877643 346889999999999999876444 34555555556778
Q ss_pred ceEEeccCCcHHHHHHHHHHccC-CcEEEecCCCcccccceeeeeeccCh------------------h-h-HHHHHHHH
Q 011188 266 QTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSE------------------S-Q-KYNKLVKL 324 (491)
Q Consensus 266 ~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~-k~~~l~~~ 324 (491)
|+|++|||+++ .+++++.+... +..++ .... .....+...+..... . . .......+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv-~~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVV-NPPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEE-CCCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 46666655433 44443 2221 111222211111000 0 0 00111234
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCC---------------------------------CceEEEcCCCCHHHHH
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERD 371 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~i~~~~~~~~r~ 371 (491)
+..+..+.++||||||+..|+.++..|++.. +.+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444456789999999999999999997531 1256899999999999
Q ss_pred HHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC
Q 011188 372 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 372 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
.+++.|++|++++||||+.++.|||++++++||+++.|.+..+|+||+||+||.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.9e-41 Score=343.35 Aligned_cols=310 Identities=18% Similarity=0.227 Sum_probs=229.7
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHH---------HHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 111 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 111 ~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~---------~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+..-. ......+++|++||++||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 37999999999999999999999999986 3334444432110 122356899999999999999999876
Q ss_pred hcCC---CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 182 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 182 ~~~~---~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
.... .+..+...+|+... ..........+|+|+|++.. ...+.++++||+||||.+...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 4432 35677888998763 22222233678999996521 2347789999999999987664 4455555
Q ss_pred hhcC-CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC----------hhhHHHHHHHHHHh
Q 011188 259 SQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS----------ESQKYNKLVKLLED 327 (491)
Q Consensus 259 ~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~ 327 (491)
.... ..+|+++||||++.++..+ ..++.++..+.+... ....+.+.+.... ...+ ..+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHH
Confidence 4443 3458999999999888777 567778877766432 2233444332111 1122 223333333
Q ss_pred hc--cCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHH-hCCCCcEEEEeccccccCCCCCCCE
Q 011188 328 IM--DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLDVKDVKY 402 (491)
Q Consensus 328 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~Gidi~~~~~ 402 (491)
.. .++++||||+++.+++.+++.|++. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||||++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 21 3458999999999999999999876 68999999999975 4666777 6899999999999999999999999
Q ss_pred EEEcC---CCC---------ChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 403 VINYD---FPG---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 403 VI~~~---~p~---------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
||+++ .|. |.++|+||+||+||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 888999999999999 89999999998764
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.4e-41 Score=341.41 Aligned_cols=346 Identities=15% Similarity=0.180 Sum_probs=241.4
Q ss_pred CHHHHHHHHhhcCceEecCCCCCCcCCcccC---CCCHHHHHHHHHC--CCCCCcHHHHHHHHHhhcCCcEEEEcCCCCh
Q 011188 61 SEREVEEYRQQREITVEGRDVPKPVKSFRDV---GFPDYVMQEISKA--GFFEPTPIQAQGWPMALKGRDLIGIAETGSG 135 (491)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~---~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsG 135 (491)
-.+.+..+.++..+...-+ .+....+.+ .+...+....... +...|+++|.++++.++.+++.++++|||+|
T Consensus 65 ~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsG 141 (501)
T PHA02558 65 LVGQLKKFAKNRGYSIWVD---PRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAG 141 (501)
T ss_pred hHHHHHHHHHhcCCeEecC---cccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCC
Confidence 3567777777776655322 222222211 1222222222221 2358999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEe
Q 011188 136 KTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIA 215 (491)
Q Consensus 136 KT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~ 215 (491)
||+++.. +...+... ...++|||+||++|+.||.+.+.+++......+..+.+|.... ...+|+|+
T Consensus 142 KT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~Va 207 (501)
T PHA02558 142 KSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVS 207 (501)
T ss_pred HHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEe
Confidence 9997654 32332221 1347999999999999999999998755445565666665432 34689999
Q ss_pred ChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHH-HHccCCcEEEe
Q 011188 216 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVII 294 (491)
Q Consensus 216 T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~ 294 (491)
|++++.+... ..+.++++||+||||++... .+..++..+++.+++++||||+++....... ..+..|+...+
T Consensus 208 T~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v 280 (501)
T PHA02558 208 TWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPV 280 (501)
T ss_pred eHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEe
Confidence 9999876432 23678999999999998754 4567777777788999999998653221111 11111222211
Q ss_pred cCCCcc-----ccc--------------------ceeeee-eccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHH
Q 011188 295 GSPDLK-----ANH--------------------AIRQHV-DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQI 347 (491)
Q Consensus 295 ~~~~~~-----~~~--------------------~~~~~~-~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l 347 (491)
...++. ... ...+.+ .......+...+..++..+. .+.+++|||++.++++.+
T Consensus 281 ~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L 360 (501)
T PHA02558 281 TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPL 360 (501)
T ss_pred cHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHH
Confidence 110000 000 000000 11222334445555554443 456899999999999999
Q ss_pred HHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCC
Q 011188 348 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 426 (491)
Q Consensus 348 ~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g 426 (491)
++.|++.+.++..+||+++.++|..+++.|+.|+..||||| +++++|+|+|++++||+++++.|...|+||+||++|.+
T Consensus 361 ~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 361 YEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred HHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999987
Q ss_pred Ccce
Q 011188 427 AKGT 430 (491)
Q Consensus 427 ~~g~ 430 (491)
....
T Consensus 441 ~~K~ 444 (501)
T PHA02558 441 GSKS 444 (501)
T ss_pred CCCc
Confidence 6543
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.7e-40 Score=343.94 Aligned_cols=306 Identities=21% Similarity=0.273 Sum_probs=234.8
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCCCCce
Q 011188 111 PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIK 189 (491)
Q Consensus 111 ~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~~~~~ 189 (491)
.+-.+.+..+.+++++|++|+||||||++|.++++..... +.+++|+.|+|++|.|+++.+. .++...+..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 3445666777788999999999999999999998876522 4689999999999999999986 454444555
Q ss_pred EEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc-ccccCCcHHH-HHHHHhhcCCCCce
Q 011188 190 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQT 267 (491)
Q Consensus 190 v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah-~~~~~~~~~~-~~~i~~~~~~~~~~ 267 (491)
+...+.+.. ......+|+|+|+++|.+++.. ...+.++++|||||+| ++++.++... +..+...++++.|+
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 544444322 2234578999999999998876 4568999999999999 5777665543 34566667889999
Q ss_pred EEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHH-----HHHHHHHHhhccCCeEEEEeCCcc
Q 011188 268 LYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKK 342 (491)
Q Consensus 268 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~lVf~~~~~ 342 (491)
|+||||++... + ..++.++..+.+... ...+.+.+.......+. ..+..++.. ..+++|||++++.
T Consensus 150 IlmSATl~~~~--l-~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 220 (819)
T TIGR01970 150 LAMSATLDGER--L-SSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQA 220 (819)
T ss_pred EEEeCCCCHHH--H-HHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHH
Confidence 99999998653 3 455555444443322 12344444333333322 122233322 3468999999999
Q ss_pred cHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC---------
Q 011188 343 GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG--------- 410 (491)
Q Consensus 343 ~~~~l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~--------- 410 (491)
+++.+++.|++ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 99999999987 478899999999999999999999999999999999999999999999999999874
Q ss_pred ---------ChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 411 ---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 411 ---------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
|.+++.||+||+||. +.|.||.++++.+..
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 456799999999999 799999999986543
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-39 Score=327.69 Aligned_cols=316 Identities=22% Similarity=0.258 Sum_probs=249.6
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|+|+|..+++.+++|+ |+.+.||+|||++|.+|++..... ++.++||+||++||.|.++++..+...++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~lG 172 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEALG 172 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999998 999999999999999999988665 77899999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccC-------------------------ccccCccEEEEcc
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN-------------------------TNLRRVTYLVLDE 241 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~-------------------------~~l~~~~~lIiDE 241 (491)
+++.+++|+.+ .+.+....+++|+|+|...| .++|.... .....+.+.||||
T Consensus 173 lsv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 173 LTVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred CEEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 99999999875 34555567899999999876 44443321 1135678999999
Q ss_pred cccccc---------------C---CcHHHHHHHHhhc------------------------------------------
Q 011188 242 ADRMLD---------------M---GFEPQIKKILSQI------------------------------------------ 261 (491)
Q Consensus 242 ah~~~~---------------~---~~~~~~~~i~~~~------------------------------------------ 261 (491)
+|.++= . .+......+...+
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 997440 0 0000000000000
Q ss_pred --------------CC-------------------------------------------------------------CCc
Q 011188 262 --------------RP-------------------------------------------------------------DRQ 266 (491)
Q Consensus 262 --------------~~-------------------------------------------------------------~~~ 266 (491)
.. -.+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 00 026
Q ss_pred eEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHH
Q 011188 267 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCD 345 (491)
Q Consensus 267 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~ 345 (491)
+.+||||.+....++...|..++..+....+. .....+.+..++...|...|.+.+.... .+.++||||+|++.++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 67999999988888888888887665544433 2223344455677889999999988754 3568999999999999
Q ss_pred HHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHH
Q 011188 346 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVH 417 (491)
Q Consensus 346 ~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~~~-----~VI~~~~p~s~~~~~Q 417 (491)
.++..|.+.++++..+||.++. |+..+..|..++..|+|||+++++|+||+ ++. +||+++.|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 9999999999999999998654 45555556666667999999999999999 666 9999999999999999
Q ss_pred hhhhcccCCCcceEEEEeCcccH
Q 011188 418 RIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 418 r~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|+||+||.|+.|.++.|++..|.
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred hcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999998664
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.9e-40 Score=342.61 Aligned_cols=335 Identities=22% Similarity=0.287 Sum_probs=262.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
..+++.+.+.+...++.++.+.|+.++...+ +++|+|+++|||||||++++++++..+.+. +.+++++||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477888888888888899999999987655 569999999999999999999999998873 57799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC
Q 011188 170 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 249 (491)
Q Consensus 170 ~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~ 249 (491)
+||++.+++++++ ...+++|...+|+...... ...+++|+|+||+++...+.+....+.++++||+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 9999999999944 4668999999998875442 23468999999999988887776678899999999999998887
Q ss_pred cHHHHHHHHhhcC---CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChh-------hHHH
Q 011188 250 FEPQIKKILSQIR---PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES-------QKYN 319 (491)
Q Consensus 250 ~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~ 319 (491)
.++.++.++...+ ...|++++|||+|+ ..+++.++..++.................+.+...... ....
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7888888776654 34799999999987 67788877766653232222222333333333322211 2234
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC-------------------------------------CCceEEEc
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIH 362 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~i~ 362 (491)
.+..++..+.+++++||||++++.+...++.|+.. -..+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 44445555667889999999999999998888620 01245789
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE----EcC-----CCCChhHHHHhhhhcccCCCc--ceE
Q 011188 363 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD-----FPGSLEDYVHRIGRTGRAGAK--GTA 431 (491)
Q Consensus 363 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI----~~~-----~p~s~~~~~Qr~GR~gR~g~~--g~~ 431 (491)
++++.++|..+.+.|++|+++||+||+++++|+|+|.-++|| .|+ .+.+..++.||+|||||.|-+ |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999877776 455 455789999999999999865 667
Q ss_pred EEEeCc
Q 011188 432 YTFFTA 437 (491)
Q Consensus 432 ~~~~~~ 437 (491)
+++.+.
T Consensus 402 ~i~~~~ 407 (766)
T COG1204 402 IILATS 407 (766)
T ss_pred EEEecC
Confidence 776633
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=315.20 Aligned_cols=338 Identities=21% Similarity=0.301 Sum_probs=273.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
...+++.+|+.+...++..|+.++.|.|.-++.+ ++.|+|.+++++|+||||++..++-+..++. .+.+.|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~Kmlf 266 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLF 266 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEE
Confidence 4467888999999999999999999999999987 7799999999999999999999988888876 3788999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH----HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV----RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~----~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
++|..+||+|-+++|++-...+++++..-.|........ ......+||||+|++-+-.++... ..+.+++.||+|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999999976678888887777654332221 222345899999999997777665 668999999999
Q ss_pred cccccccCCcHHHHHHHH---hhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-hhh
Q 011188 241 EADRMLDMGFEPQIKKIL---SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQ 316 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (491)
|+|.+.+...++.+.-++ +.+-+..|+|.+|||..+ -+++++.+...++.+. ..+..+..++.+.. ..+
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~e 418 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYD------ERPVPLERHLVFARNESE 418 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeec------CCCCChhHeeeeecCchH
Confidence 999998876666666554 444578999999999976 4567777766655543 22334444554554 678
Q ss_pred HHHHHHHHHHhhc-------cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec
Q 011188 317 KYNKLVKLLEDIM-------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 389 (491)
Q Consensus 317 k~~~l~~~l~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 389 (491)
|.+.+..+.+.-. -.+++|||++|++.|+.|+..|...|+++..+|++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 8888888776422 134899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEE---cCC-CCChhHHHHhhhhcccCCC--cceEEEEeCcc
Q 011188 390 VAARGLDVKDVKYVIN---YDF-PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 438 (491)
Q Consensus 390 ~~~~Gidi~~~~~VI~---~~~-p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 438 (491)
+++.|+|+|.-.+++- .+. .-|+.+|.||+|||||.+- .|++|+++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999986444431 122 3389999999999999875 48888887753
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.3e-39 Score=350.36 Aligned_cols=303 Identities=22% Similarity=0.280 Sum_probs=237.2
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 011188 99 QEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 177 (491)
Q Consensus 99 ~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 177 (491)
+.+.+ .|+ +|+++|..+++.++.|++++++||||+|||+ |.++++.++.. ++++++||+||++|+.|+.+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHH
Confidence 34434 355 8999999999999999999999999999996 45555555433 37889999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCccC-----hhhHHHhh-cCCcEEEeChHHHHHHHhccCccccCccEEEEcccccccc----
Q 011188 178 ESTKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---- 247 (491)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~g~~~-----~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~---- 247 (491)
.+++++...++.+..++++... ..+...+. ..++|+|+||++|.+++. .+...++++||+||||++++
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 9999998888888888776542 22233344 358999999999998876 34456799999999999986
Q ss_pred -------CCcH-HHHHHHHhhcCC------------------------CCceEEeccCCcHH-HHHHHHHHccCCcEEEe
Q 011188 248 -------MGFE-PQIKKILSQIRP------------------------DRQTLYWSATWPKE-VEHLARQYLYNPYKVII 294 (491)
Q Consensus 248 -------~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~ 294 (491)
.||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 5674 567777766653 67999999999763 322 23344444555
Q ss_pred cCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCccc---HHHHHHHHHhCCCceEEEcCCCCHHHHH
Q 011188 295 GSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAERD 371 (491)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~i~~~~~~~~r~ 371 (491)
.... ....++.+.+.... ++...+.++++... .++||||+++.. ++.+++.|+..|+++..+||++ .
T Consensus 297 ~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 297 GSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred cCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 4443 23345555554443 56777888887653 479999999888 9999999999999999999999 2
Q ss_pred HHHHHHhCCCCcEEEE----eccccccCCCCC-CCEEEEcCCCC------ChhHHHHhhhhcccC
Q 011188 372 WVLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG------SLEDYVHRIGRTGRA 425 (491)
Q Consensus 372 ~~~~~f~~g~~~vLva----T~~~~~Gidi~~-~~~VI~~~~p~------s~~~~~Qr~GR~gR~ 425 (491)
..+++|++|+++|||| |++++||||+|+ +++||||+.|. ....+.||+||+...
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 3459999999999999 689999999999 89999999998 668899999999743
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.5e-39 Score=339.83 Aligned_cols=306 Identities=19% Similarity=0.296 Sum_probs=233.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 011188 112 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 190 (491)
Q Consensus 112 ~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~v 190 (491)
+-.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+++.+.+ ++...+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345666777788999999999999999999888865321 34799999999999999999864 555556666
Q ss_pred EEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCCcH-HHHHHHHhhcCCCCceE
Q 011188 191 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFE-PQIKKILSQIRPDRQTL 268 (491)
Q Consensus 191 ~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i 268 (491)
...+++... .....+|+|+||++|.+++.. ...+.++++|||||+|. .++.++. ..+..++..++++.|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 665555432 123468999999999998876 45689999999999996 4554432 33455667778899999
Q ss_pred EeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHH-HHHHHHHhh--ccCCeEEEEeCCcccHH
Q 011188 269 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN-KLVKLLEDI--MDGSRILIFMDTKKGCD 345 (491)
Q Consensus 269 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~l~~~--~~~~~~lVf~~~~~~~~ 345 (491)
+||||++.+ .+ ..++.++..+.+... ...+.+.+.......+.. .+...+... ...+.+|||++++.+++
T Consensus 154 lmSATl~~~--~l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 154 IMSATLDND--RL-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEecCCCHH--HH-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 999999864 23 455555544443322 123444443344333332 222222222 13468999999999999
Q ss_pred HHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC------------
Q 011188 346 QITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------ 410 (491)
Q Consensus 346 ~l~~~L~~---~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~------------ 410 (491)
.+++.|+. .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||++++||+++.+.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999986 578899999999999999999999999999999999999999999999999988764
Q ss_pred ------ChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 411 ------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 411 ------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|.++|.||.||+||. +.|.||.++++.+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 456899999999999 69999999997654
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.5e-39 Score=356.13 Aligned_cols=329 Identities=19% Similarity=0.245 Sum_probs=248.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 96 YVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 96 ~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
.+.+.+++ .|| +|+++|.++++.+++|++++++||||+|||+.++++++.... +++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 44455655 788 799999999999999999999999999999966665554422 26789999999999999
Q ss_pred HHHHHHHhcCCC--CceEEEEECCccChhhH---HHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEcccccccc-
Q 011188 175 IQQESTKFGASS--KIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 247 (491)
Q Consensus 175 ~~~~~~~~~~~~--~~~v~~~~~g~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~- 247 (491)
+.+.+..++... ++.+..++|+.+..++. ..+.. .++|+|+||++|.+.+... . ..+++++|+||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccc
Confidence 999999987764 45677788887765543 33444 4899999999998776542 2 26799999999999986
Q ss_pred ----------CCcHHHHHH----HHh----------------------hcCCCCc-eEEeccCCcHHHHHHHHHHccCCc
Q 011188 248 ----------MGFEPQIKK----ILS----------------------QIRPDRQ-TLYWSATWPKEVEHLARQYLYNPY 290 (491)
Q Consensus 248 ----------~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~ 290 (491)
.+|.+.+.. ++. .+++..| ++++|||++... .. ..++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~~-~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-DR-VKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-HH-HHHhhcCe
Confidence 478777764 322 2344555 577999998531 11 12345666
Q ss_pred EEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCccc---HHHHHHHHHhCCCceEEEcCCCCH
Q 011188 291 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQ 367 (491)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~i~~~~~~ 367 (491)
.+.+.... ....++.+.+.......+ ..+.++++.. +..+||||++++. |+.+++.|+..|+++..+|++
T Consensus 294 ~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66665544 333455565554444444 5677777765 4579999999876 589999999999999999995
Q ss_pred HHHHHHHHHHhCCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC---ChhHHHHhh-------------hhcccCC
Q 011188 368 AERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG---SLEDYVHRI-------------GRTGRAG 426 (491)
Q Consensus 368 ~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~VI~~~~p~---s~~~~~Qr~-------------GR~gR~g 426 (491)
|..++++|++|+++||||| ++++||||+|+ +++||||+.|. +.+.|.|-. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999998 99999999999 777666654 9999999
Q ss_pred CcceEEEEeCcccHHHHHHH
Q 011188 427 AKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 427 ~~g~~~~~~~~~~~~~~~~l 446 (491)
....++..+...+...++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHH
Confidence 88777744444444444433
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.3e-39 Score=317.03 Aligned_cols=300 Identities=22% Similarity=0.243 Sum_probs=211.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccCh----
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 200 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~---- 200 (491)
++++++|||||||++|++|++..+... .+.+++|++|+++|+.|+.+.+..+... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 479999999999999999999876442 2568999999999999999999986422 233333332210
Q ss_pred --------hhHHHh------hcCCcEEEeChHHHHHHHhccC----ccc--cCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 201 --------PQVRDL------QKGVEIVIATPGRLIDMLESHN----TNL--RRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 201 --------~~~~~~------~~~~~Iiv~T~~~l~~~l~~~~----~~l--~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
...... ....+|+|+||+++...+.... ..+ -..+++|+||+|.+.+..+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000000 1135799999999988766521 111 123789999999998765433 5555554
Q ss_pred cC-CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee--ccChhhHHHHHHHHHHhhccCCeEEEE
Q 011188 261 IR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--IVSESQKYNKLVKLLEDIMDGSRILIF 337 (491)
Q Consensus 261 ~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~l~~~~~~~~~lVf 337 (491)
+. .+.|+++||||+|+.+.++.......+........... ....+.+. ......+...+..+++....+.++|||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 43 47899999999997777666555433221111111000 00111111 112234556666667666667899999
Q ss_pred eCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHH----HHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCC
Q 011188 338 MDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 411 (491)
Q Consensus 338 ~~~~~~~~~l~~~L~~~~~--~~~~i~~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s 411 (491)
|++++.|+.+++.|++.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|+|++ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 9999999999999988765 4999999999999976 48899999999999999999999995 8899988877
Q ss_pred hhHHHHhhhhcccCCCc----ceEEEEeCccc
Q 011188 412 LEDYVHRIGRTGRAGAK----GTAYTFFTAAN 439 (491)
Q Consensus 412 ~~~~~Qr~GR~gR~g~~----g~~~~~~~~~~ 439 (491)
+.+|+||+||+||.|+. |..+++....+
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 78999999999998764 36777766543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-38 Score=323.98 Aligned_cols=319 Identities=19% Similarity=0.254 Sum_probs=242.2
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 105 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
|. .|+++|..+++.+.+|+ |+.+.||+|||++|++|++..... ++.++|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 89999999998888776 999999999999999999877665 77899999999999999999999999
Q ss_pred CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccC------ccccCccEEEEccccccccC---------
Q 011188 185 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLDM--------- 248 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~~~~~lIiDEah~~~~~--------- 248 (491)
.+++++.++.|+.+...+.+ ....++|+++||++| .+++.... ..+..+.++|+||||.|+=.
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999987433333 345689999999998 55554322 34678999999999985510
Q ss_pred -------CcHHHHHHHHhhcCCC---------------------------------------------------------
Q 011188 249 -------GFEPQIKKILSQIRPD--------------------------------------------------------- 264 (491)
Q Consensus 249 -------~~~~~~~~i~~~~~~~--------------------------------------------------------- 264 (491)
.+......++..+.+.
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 0111111222111100
Q ss_pred ------------------------------------------------------------CceEEeccCCcHHHHHHHHH
Q 011188 265 ------------------------------------------------------------RQTLYWSATWPKEVEHLARQ 284 (491)
Q Consensus 265 ------------------------------------------------------------~~~i~~SAT~~~~~~~~~~~ 284 (491)
.++.+||+|......++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 14456666665444445444
Q ss_pred HccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcC
Q 011188 285 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 363 (491)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~ 363 (491)
|..+.+.+ .... .....-...........|...+.+.+... ..+.++||||+|++.++.++..|.+.++++..+|+
T Consensus 384 Y~l~v~~I--Pt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNMEVVQI--PTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCCcEEEC--CCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 43322221 1111 11111112233456678899998888764 45679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEEeccccccCCC---CCCC-----EEEEcCCCCChhHHHHhhhhcccCCCcceEEEEe
Q 011188 364 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV---KDVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 435 (491)
Q Consensus 364 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi---~~~~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 435 (491)
.+.+.++..+...++.| .|+|||++++||+|| |++. +||++++|.|...|.||+||+||.|..|.++.|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888888777766 699999999999999 6898 9999999999999999999999999999999999
Q ss_pred CcccH
Q 011188 436 TAANA 440 (491)
Q Consensus 436 ~~~~~ 440 (491)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 98654
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.4e-37 Score=329.89 Aligned_cols=324 Identities=25% Similarity=0.314 Sum_probs=243.1
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..++++||.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 358999999999988876 99999999999999999888776632 2568999999999999999999987655
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
....+..++|+...... ..+..+.+|+|+||+.+...+......+.++++|||||||++........+........+.+
T Consensus 85 ~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 45577777877655433 33445679999999999888877777888999999999999876543444444444445567
Q ss_pred ceEEeccCCcHH---HHHHHHHHccCCcEEEec--------------------CCC------------------------
Q 011188 266 QTLYWSATWPKE---VEHLARQYLYNPYKVIIG--------------------SPD------------------------ 298 (491)
Q Consensus 266 ~~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~--------------------~~~------------------------ 298 (491)
++++||||+... +..++..+....+.+... ...
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 222222221111110000 000
Q ss_pred cc--cc------------cceeee--------------------------------------------------------
Q 011188 299 LK--AN------------HAIRQH-------------------------------------------------------- 308 (491)
Q Consensus 299 ~~--~~------------~~~~~~-------------------------------------------------------- 308 (491)
.. .. ..+...
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 000000
Q ss_pred ----------------eeccChhhHHHHHHHHHHhh---ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC-----
Q 011188 309 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 364 (491)
Q Consensus 309 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~----- 364 (491)
........|...|.+++++. ..+.++||||+++.+|+.|++.|...++++..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00011234566666777664 345699999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCccc
Q 011188 365 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 439 (491)
Q Consensus 365 ---~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 439 (491)
+++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ .|.+++++....
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986 488888887653
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1e-37 Score=318.78 Aligned_cols=321 Identities=17% Similarity=0.196 Sum_probs=237.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..++|+|.+++..+..++..|+.++||+|||++|++|++.+.+. ++.++||+|+++||.|+++++..+...+
T Consensus 67 lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 35677777777776666678999999999999999998777665 5569999999999999999999999999
Q ss_pred CceEEEEECCcc---ChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccccCC-------
Q 011188 187 KIKSTCIYGGVP---KGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDMG------- 249 (491)
Q Consensus 187 ~~~v~~~~~g~~---~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~~~~------- 249 (491)
++++.+++++.. ..........+++|+++||++| .+++... ...+..+.++|+||||.|+-..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 999988877632 2233344456799999999999 5555321 3346789999999999864110
Q ss_pred ---------cHHHHHHHHhhcCCC--------------------------------------------------------
Q 011188 250 ---------FEPQIKKILSQIRPD-------------------------------------------------------- 264 (491)
Q Consensus 250 ---------~~~~~~~i~~~~~~~-------------------------------------------------------- 264 (491)
+......++..+.+.
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111111112211110
Q ss_pred -------------------------------------------------------------CceEEeccCCcHHHHHHHH
Q 011188 265 -------------------------------------------------------------RQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 265 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 283 (491)
.++.+||+|......++..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 2455666666555555554
Q ss_pred HHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 011188 284 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 362 (491)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~ 362 (491)
.|..+.+.+ .... .....-.....+.....|...+.+.+.+. ..+.++||||++++.++.++..|.+.++++..+|
T Consensus 379 iY~l~v~~I--Pt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 379 TYSLSVVKI--PTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HhCCCEEEc--CCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 443222211 1111 11111122233456678899898888765 4567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC---------CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEE
Q 011188 363 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 433 (491)
Q Consensus 363 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---------~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 433 (491)
+.+.+.++..+..+++.| .|+|||++++||+||+ ++.+|+++++|....+ .||+||+||.|.+|.++.
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999988887777666 6999999999999999 8999999999988766 999999999999999999
Q ss_pred EeCcccHH
Q 011188 434 FFTAANAR 441 (491)
Q Consensus 434 ~~~~~~~~ 441 (491)
|++..|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99986543
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=309.82 Aligned_cols=334 Identities=25% Similarity=0.268 Sum_probs=238.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
+++.......--....+|.||.+.+..++ ++|+|+++|||+|||++++..++.|+...+ ..++++++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 34444443333345589999999999999 999999999999999999999999988864 47799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCcc-ccCccEEEEccccccccCCcH
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLDMGFE 251 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~-l~~~~~lIiDEah~~~~~~~~ 251 (491)
.|+...+..++.. ..+....+|.........+-...+|+|+||+.|.+.+.+.... ++.|.++||||||+-....-.
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888887755 5566666664433333355556799999999999988875443 589999999999997765534
Q ss_pred HHHH-HHHhhcCCCCceEEeccCCcHHHHHHHHH---HccC----------------------CcE--------------
Q 011188 252 PQIK-KILSQIRPDRQTLYWSATWPKEVEHLARQ---YLYN----------------------PYK-------------- 291 (491)
Q Consensus 252 ~~~~-~i~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~----------------------~~~-------------- 291 (491)
..+. ..+..-....|+|++|||+..+....... ++.. |..
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4444 55544444559999999965432222111 0000 000
Q ss_pred -------------------------EEecCCCcccccc--eeee--------------------ee--------------
Q 011188 292 -------------------------VIIGSPDLKANHA--IRQH--------------------VD-------------- 310 (491)
Q Consensus 292 -------------------------~~~~~~~~~~~~~--~~~~--------------------~~-------------- 310 (491)
..+.......... -.+. +.
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000000000 0000 00
Q ss_pred --------------------------------ccChhhHHHHHHHHHHhhc---cCCeEEEEeCCcccHHHHHHHHHh--
Q 011188 311 --------------------------------IVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM-- 353 (491)
Q Consensus 311 --------------------------------~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~-- 353 (491)
......|+..+.+.+.+.. +..++||||.+++.|+.|...|.+
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 0001345555555554432 345899999999999999999973
Q ss_pred -CCCceEEEc--------CCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhccc
Q 011188 354 -DGWPALSIH--------GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 424 (491)
Q Consensus 354 -~~~~~~~i~--------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR 424 (491)
.+++...+- .+|++.++.++++.|++|+++|||||+++++|+||+.++.||.||...|+..++||.|| ||
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR 516 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR 516 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc
Confidence 233444332 38999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcceEEEEeCc
Q 011188 425 AGAKGTAYTFFTA 437 (491)
Q Consensus 425 ~g~~g~~~~~~~~ 437 (491)
. +.|.++++++.
T Consensus 517 a-~ns~~vll~t~ 528 (746)
T KOG0354|consen 517 A-RNSKCVLLTTG 528 (746)
T ss_pred c-cCCeEEEEEcc
Confidence 8 78999999883
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-37 Score=314.75 Aligned_cols=323 Identities=19% Similarity=0.234 Sum_probs=226.8
Q ss_pred CCCcHHHHHHHHHhhc-C--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 107 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~-~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
..|+|||.+++..+.. + +..++++|||+|||++.+..+. .+ +.++|||||+..|+.||.+++.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4799999999998874 3 3689999999999999776443 32 2459999999999999999999986
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc--------cCccccCccEEEEccccccccCCcHHHHH
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--------HNTNLRRVTYLVLDEADRMLDMGFEPQIK 255 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--------~~~~l~~~~~lIiDEah~~~~~~~~~~~~ 255 (491)
......+..++|+.... .....+|+|+|++.+.....+ ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445566666543221 122368999999987532211 112224688999999999864 4555
Q ss_pred HHHhhcCCCCceEEeccCCcHHHHHHHH-HHccCCcEEEecCCCccccccee--------------------------ee
Q 011188 256 KILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDLKANHAIR--------------------------QH 308 (491)
Q Consensus 256 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~ 308 (491)
.++..+. ....++||||+......... .++..|..+...-.++.....+. ..
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 6666663 45679999998543221111 12223333222111110000000 00
Q ss_pred eeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC-CCcEEE
Q 011188 309 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMT 386 (491)
Q Consensus 309 ~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~vLv 386 (491)
.....+..|+..+..+++.+. .+.++||||++...++.++..|. +..+||++++.+|..+++.|+.+ .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 011223456666666666543 56799999999999999988873 45689999999999999999875 789999
Q ss_pred EeccccccCCCCCCCEEEEcCCC-CChhHHHHhhhhcccCCCcceE-------EEEeCcc--cHHHHHHHHHHHHHhCC
Q 011188 387 ATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTA-------YTFFTAA--NARFAKELITILEEAGQ 455 (491)
Q Consensus 387 aT~~~~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~--~~~~~~~l~~~l~~~~~ 455 (491)
+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|++.+ +..++..-.++|-+.|-
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY 626 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGY 626 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999988 4999999999999999876654 7788876 45566667777766543
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.7e-36 Score=306.34 Aligned_cols=317 Identities=21% Similarity=0.253 Sum_probs=244.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|..+...+..|+ |+.++||+|||++|.+|++..... +..|+|++||++||.|.++++..+...++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 78888888888777665 999999999999999999655554 45699999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccccCC-----------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDMG----------- 249 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~~~~----------- 249 (491)
+++.+++++.+...... ...++|+|+||++| .+++... ...++.+.++|+||+|+++-..
T Consensus 126 Lsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 99999999887544333 34589999999999 8888765 2457889999999999855100
Q ss_pred -----cHH--------------------------------HHHHHH------------------hhc------CC-----
Q 011188 250 -----FEP--------------------------------QIKKIL------------------SQI------RP----- 263 (491)
Q Consensus 250 -----~~~--------------------------------~~~~i~------------------~~~------~~----- 263 (491)
... .++.++ ..+ ..
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 000 001000 000 00
Q ss_pred --------------------------------------------------------CCceEEeccCCcHHHHHHHHHHcc
Q 011188 264 --------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLY 287 (491)
Q Consensus 264 --------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~ 287 (491)
-.++.+||+|...+..++...|..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 025678888887766666666654
Q ss_pred CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 288 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.+.+....+. ... -.....+.....|...+.+.+.+ +..+.++||||++++.++.++..|.+.++++..+|+.
T Consensus 364 ~vv~IPtnkp~--~R~-d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVVPTNRPV--IRK-DLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEeCCCCCe--eee-eCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 43333211111 111 12222344566788888776654 4567799999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeccccccCCCCC-------CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCccc
Q 011188 367 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 439 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~-------~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 439 (491)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 789999999999999999999999999999998 5599999999999999999999999999999999999876
Q ss_pred HH
Q 011188 440 AR 441 (491)
Q Consensus 440 ~~ 441 (491)
.-
T Consensus 519 ~l 520 (745)
T TIGR00963 519 NL 520 (745)
T ss_pred HH
Confidence 43
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.3e-36 Score=327.49 Aligned_cols=292 Identities=19% Similarity=0.316 Sum_probs=220.5
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 011188 96 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 175 (491)
Q Consensus 96 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 175 (491)
++.+.+.+.....|+++|..+++.++.|++++++||||+|||+ |.+|++..+.. .+++++||+||++||.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHH
Confidence 3445555555568999999999999999999999999999997 66667666543 268899999999999999
Q ss_pred HHHHHHhcCCCCceEE---EEECCccChhh---HHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEcccccccc-
Q 011188 176 QQESTKFGASSKIKST---CIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 247 (491)
Q Consensus 176 ~~~~~~~~~~~~~~v~---~~~~g~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~- 247 (491)
.+.+.++....++.+. .++|+.+..++ ...+.+ +++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhc
Confidence 9999999877665543 46677765543 233333 48999999999988776522 2 799999999999997
Q ss_pred ----------CCcHHH-HHHHH----------------------hhcCCCCc--eEEeccC-CcHHHHHHHHHHccCCcE
Q 011188 248 ----------MGFEPQ-IKKIL----------------------SQIRPDRQ--TLYWSAT-WPKEVEHLARQYLYNPYK 291 (491)
Q Consensus 248 ----------~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~~~ 291 (491)
.||... +..++ +.+++..| ++++||| +|..+.. .++.+...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 567653 44432 23344445 5678999 5554332 23445555
Q ss_pred EEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCc---ccHHHHHHHHHhCCCceEEEcCCCCHH
Q 011188 292 VIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQA 368 (491)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~---~~~~~l~~~L~~~~~~~~~i~~~~~~~ 368 (491)
+.+.... ....++.+.+..... +...+.++++.. +.++||||+++ +.|+.+++.|++.|+++..+||++++
T Consensus 292 ~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 292 FEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred eEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 5554443 233445555443332 245677777664 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhCCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC
Q 011188 369 ERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 410 (491)
Q Consensus 369 ~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~VI~~~~p~ 410 (491)
.++++|++|+++||||| ++++||||+|+ +++||||+.|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999994 89999999999 89999999996
No 72
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=307.54 Aligned_cols=340 Identities=22% Similarity=0.288 Sum_probs=256.6
Q ss_pred CCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcC--CCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 104 AGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQ--PFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
.+|..++.+|.+++|.++. +.|+|||||||+|||.+|++.++..+.++ ......++.++++++|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5677899999999999884 67999999999999999999999888752 22233457889999999999999999998
Q ss_pred HhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc----CccccCccEEEEccccccccCCcHHHHHH
Q 011188 181 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLDMGFEPQIKK 256 (491)
Q Consensus 181 ~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lIiDEah~~~~~~~~~~~~~ 256 (491)
+-....+++|..++|++...... -..++|+|+||+++ +.+-+. ...++.+.+||+||+|.+-+. .++.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 77777899999999998664433 34589999999998 443322 123567899999999976654 5788887
Q ss_pred HHhhc-------CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChh---hHH-----HHH
Q 011188 257 ILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKY-----NKL 321 (491)
Q Consensus 257 i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~~l 321 (491)
|+.+. ....+++++|||+|+ .+++++++..+|..-.+.......+..+.+.+...... ... ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 76554 356789999999997 77888877766443333323223444555555433322 111 112
Q ss_pred HHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC----C-------------------CceEEEcCCCCHHHHHHHHHHHh
Q 011188 322 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----G-------------------WPALSIHGDKSQAERDWVLSEFK 378 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~-------------------~~~~~i~~~~~~~~r~~~~~~f~ 378 (491)
.++++.+..+.+++|||.++...-..++.|.+. | .....+|++|...+|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 234445566889999999999998888888542 1 12457899999999999999999
Q ss_pred CCCCcEEEEeccccccCCCCCCCEEE----EcCCCC------ChhHHHHhhhhcccCC--CcceEEEEeCcccHHHHHHH
Q 011188 379 AGKSPIMTATDVAARGLDVKDVKYVI----NYDFPG------SLEDYVHRIGRTGRAG--AKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 379 ~g~~~vLvaT~~~~~Gidi~~~~~VI----~~~~p~------s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 446 (491)
.|.++||+||..+++|+|+|+-.++| .||... ...+.+|..|||||.. ..|.++++.+.+....+..|
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999766666 233322 5788999999999964 56899988888777776666
Q ss_pred HHH
Q 011188 447 ITI 449 (491)
Q Consensus 447 ~~~ 449 (491)
+..
T Consensus 500 l~~ 502 (1230)
T KOG0952|consen 500 LTG 502 (1230)
T ss_pred HcC
Confidence 554
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.3e-35 Score=288.93 Aligned_cols=291 Identities=18% Similarity=0.197 Sum_probs=201.4
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC----
Q 011188 112 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 185 (491)
Q Consensus 112 ~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~---- 185 (491)
+|.++++.+.++.+ +++++|||+|||.+|++|++.. ..++++++|+++|++|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999988842 335799999999999999998887532
Q ss_pred CCceEEEEECCccCh--hhH------------------HHhhcCCcEEEeChHHHHHHHhcc---C-----ccccCccEE
Q 011188 186 SKIKSTCIYGGVPKG--PQV------------------RDLQKGVEIVIATPGRLIDMLESH---N-----TNLRRVTYL 237 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~--~~~------------------~~~~~~~~Iiv~T~~~l~~~l~~~---~-----~~l~~~~~l 237 (491)
.+..+..+.|....+ ... ......++|+++||+.|..++... . ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 345566666542211 000 011235789999999987655331 1 124789999
Q ss_pred EEccccccccCC-----cHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH--ccCCcEEEecCCCc-----------
Q 011188 238 VLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDL----------- 299 (491)
Q Consensus 238 IiDEah~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 299 (491)
||||+|.+..+. +......++.......+++++|||+++.+.+..... +..+...+.+..-.
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 122334444444445799999999998877777654 34444332222000
Q ss_pred c------cccceeeeeeccChhhHHHHHHHHHHhh------ccCCeEEEEeCCcccHHHHHHHHHhCC--CceEEEcCCC
Q 011188 300 K------ANHAIRQHVDIVSESQKYNKLVKLLEDI------MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 365 (491)
Q Consensus 300 ~------~~~~~~~~~~~~~~~~k~~~l~~~l~~~------~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~i~~~~ 365 (491)
. ....+.+.+.. ....+...+..+++.. ..+.++||||++++.++.+++.|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 2223333333322222 245689999999999999999998764 5788999999
Q ss_pred CHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcc
Q 011188 366 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 423 (491)
Q Consensus 366 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~g 423 (491)
++.+|..+ ++.+|||||+++++|||+|.+ +|| ++ |.+...|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988654 378899999999999999976 666 45 888999999999987
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=285.64 Aligned_cols=301 Identities=31% Similarity=0.491 Sum_probs=230.9
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcC---CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccE
Q 011188 160 PIVLVLAPTRELAVQIQQESTKFGA---SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 236 (491)
Q Consensus 160 ~~vlil~Pt~~L~~q~~~~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 236 (491)
+.++|+-|+++|++|..+.+++|.. ...++...+.||.....+...+.++.+|+|+||+++.+.+.+....+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 6789999999999999997776643 3446777888988888999999999999999999999999999999999999
Q ss_pred EEEccccccccCCcHHHHHHHHhhcC------CCCceEEeccCCcH-HHHHHHHHHccCCcEEEecCCCcccccceeeee
Q 011188 237 LVLDEADRMLDMGFEPQIKKILSQIR------PDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV 309 (491)
Q Consensus 237 lIiDEah~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
+++||++.++..++...+.++-..++ ...|.+..|||+.. ++..+....+.-|.-+.....+ .....+.+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccce
Confidence 99999999999998888888776665 34688999999742 3444555555445444443333 1111111111
Q ss_pred eccC------------------------------hhhHHHH---------HHHHHHhhccCCeEEEEeCCcccHHHHHHH
Q 011188 310 DIVS------------------------------ESQKYNK---------LVKLLEDIMDGSRILIFMDTKKGCDQITRQ 350 (491)
Q Consensus 310 ~~~~------------------------------~~~k~~~---------l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 350 (491)
..+. +.+.... -...++++ .-.++||||.++..|+.|.++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHH
Confidence 1110 0000111 11122222 234899999999999999999
Q ss_pred HHhCC---CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCC
Q 011188 351 LRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 427 (491)
Q Consensus 351 L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 427 (491)
+++.| +.+..+||+..+.+|.+.++.|++++.++||||+++++|+||..+-+||+..+|.....|+|||||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98874 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeCc--------------------------------ccHHHHHHHHHHHHHhCCCCCHHHH
Q 011188 428 KGTAYTFFTA--------------------------------ANARFAKELITILEEAGQKVSPELA 462 (491)
Q Consensus 428 ~g~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~~~~~l~ 462 (491)
-|.++.++.- ++...+.++.+.|.-..+++.+.+.
T Consensus 605 mglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~ 671 (725)
T KOG0349|consen 605 MGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMD 671 (725)
T ss_pred cceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCC
Confidence 9998876542 2345666777777666666665543
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2e-35 Score=311.77 Aligned_cols=334 Identities=23% Similarity=0.327 Sum_probs=260.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
....+..++.+.++..|+++|.+|+..+.+|+++|++.+||||||.+|++|++.++..++ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 345567888889999999999999999999999999999999999999999999999864 33789999999999
Q ss_pred HHHHHHHHHhcCCCC--ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc----CccccCccEEEEccccccc
Q 011188 173 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~--~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lIiDEah~~~ 246 (491)
+.+.+.++++....+ +.+....|++...+......+.++|+++||++|...+... .+.++++++||+||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999887776 7777778877776666777888999999999997755432 3346789999999999643
Q ss_pred cCCcHHHHHHHHh-------hcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC------
Q 011188 247 DMGFEPQIKKILS-------QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ 313 (491)
Q Consensus 247 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 313 (491)
. .|+..+..+++ ..+...|+|+.|||+.+ ..+++..+........+.... ..... ...+...+
T Consensus 209 G-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g-~~~~~-~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 G-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG-SPRGL-RYFVRREPPIRELA 284 (851)
T ss_pred c-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC-CCCCc-eEEEEeCCcchhhh
Confidence 2 23444333333 33467899999999976 456667777776666332222 11111 11221111
Q ss_pred ---hhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHH----HHHHhCC----CceEEEcCCCCHHHHHHHHHHHhCCC
Q 011188 314 ---ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGK 381 (491)
Q Consensus 314 ---~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~----~~L~~~~----~~~~~i~~~~~~~~r~~~~~~f~~g~ 381 (491)
...+...+..++... ..+-++|+|+.++..++.+. +.+...+ ..+..+++++...+|..+...|+.|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 113333344444333 34569999999999999997 4444445 56889999999999999999999999
Q ss_pred CcEEEEeccccccCCCCCCCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 382 SPIMTATDVAARGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 382 ~~vLvaT~~~~~Gidi~~~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
..++++|++++-|+||.+++.||.+..|. +..+++||.||+||.++.+..+.+..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999 89999999999999987776666555
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6e-36 Score=313.25 Aligned_cols=333 Identities=23% Similarity=0.310 Sum_probs=262.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 100 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 100 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
.....|...++|-|.++|..++.|+++++.+|||.||+++|.+|++.. +...|||.|..+|.+.+...+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhh
Confidence 334578899999999999999999999999999999999999998754 557999999999976665555
Q ss_pred HHhcCCCCceEEEEECCccChhh---HHHhhc---CCcEEEeChHHHHHH--HhccCccccC---ccEEEEccccccccC
Q 011188 180 TKFGASSKIKSTCIYGGVPKGPQ---VRDLQK---GVEIVIATPGRLIDM--LESHNTNLRR---VTYLVLDEADRMLDM 248 (491)
Q Consensus 180 ~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~---~~~Iiv~T~~~l~~~--l~~~~~~l~~---~~~lIiDEah~~~~~ 248 (491)
.. .++....+.++....++ ...+.. .++|++.||+++... +......+.. +.++|+||||++..|
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 33 34777777777665433 233333 378999999997542 1112223334 889999999999998
Q ss_pred C--cHHHHHHHHhh--cCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHH
Q 011188 249 G--FEPQIKKILSQ--IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 324 (491)
Q Consensus 249 ~--~~~~~~~i~~~--~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 324 (491)
+ |++.+..+... -.+...++++|||....+.+.+-..+.-.....+.... ...++...+...........+...
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf--nR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF--NRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC--CCCCceEEEEeccCccchHHHHHH
Confidence 7 88887766332 23457899999999887776665555443333333322 222333333333334555666677
Q ss_pred HHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE
Q 011188 325 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 325 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI 404 (491)
++...+....||||.++.+|+.++..|+..++.+..+|++|+..+|..+..+|..++++|+|||=+++.|||-|+|+.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 77777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHH
Q 011188 405 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 405 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 449 (491)
||.+|.|.+.|.|-+|||||.|....|++|+...|...++.++..
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999877666655543
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.6e-35 Score=312.84 Aligned_cols=303 Identities=23% Similarity=0.325 Sum_probs=216.9
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc----HHHHHHHHHHHHH-hcC
Q 011188 110 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT----RELAVQIQQESTK-FGA 184 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt----~~L~~q~~~~~~~-~~~ 184 (491)
..+-.+.+..+..++.++++|+||||||+ .+|.+..... .+....+++..|. ++||.|+++++.. ++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-----~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-----RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-----CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34455666777788889999999999999 5674433221 1112245555674 5888888888874 554
Q ss_pred CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc-ccccCCcHHH-HHHHHhhcC
Q 011188 185 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIR 262 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah-~~~~~~~~~~-~~~i~~~~~ 262 (491)
..++.+ .... ....++.|+|+||++|++.+.... .+.++++||||||| ++++.+|... +..++.. +
T Consensus 149 ~VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 149 CVGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred eeceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 444332 1111 124568999999999999988654 48999999999999 6888887653 3343332 3
Q ss_pred CCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccCh------hhHHHHHHHHHHhh--ccCCeE
Q 011188 263 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRI 334 (491)
Q Consensus 263 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~~ 334 (491)
++.|+|+||||++. +.+.+.+...|. +.+.... ..+...+..... .+....+...+..+ ...+.+
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 57899999999974 466666655554 3333221 223333322211 22344444444332 234679
Q ss_pred EEEeCCcccHHHHHHHHHhCCCc---eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC---
Q 011188 335 LIFMDTKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--- 408 (491)
Q Consensus 335 lVf~~~~~~~~~l~~~L~~~~~~---~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~--- 408 (491)
||||++..+++.+++.|++.+++ +..+||++++++|..+++. .|..+|||||+++++|||||++++||+++.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999987664 6789999999999999886 578899999999999999999999999863
Q ss_pred ------------C---CChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 409 ------------P---GSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 409 ------------p---~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
| .|.++|.||+||+||. .+|.||.++++.+..
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 4668999999999999 799999999986543
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-35 Score=273.05 Aligned_cols=332 Identities=23% Similarity=0.346 Sum_probs=242.7
Q ss_pred HHHHHHH-CCCCC-CcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 97 VMQEISK-AGFFE-PTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 97 ~~~~l~~-~~~~~-~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
+..+|++ +|+.. -++.|++|+..+..+ +|+.+++|||+||+++|.+|+|.+ +...||+.|..+|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 4445554 35443 478999999988765 689999999999999999999976 458999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEECCccChhh---HHHhh---cCCcEEEeChHHHH-----HHHhccCccccCccEEEEccc
Q 011188 174 QIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ---KGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEA 242 (491)
Q Consensus 174 q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~---~~~~Iiv~T~~~l~-----~~l~~~~~~l~~~~~lIiDEa 242 (491)
.+.+.+.++. +.+..+.+..+..+. +.++. ....+++.||+... .+|+. ..+-..+.|+|+|||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechh
Confidence 8888887764 333334333332222 22222 24679999998742 22221 222345789999999
Q ss_pred cccccCC--cHHHHHHHH--hhcCCCCceEEeccCCcHHHHHHHH--HHccCCcEEEecCCCcccccceeeeeeccChhh
Q 011188 243 DRMLDMG--FEPQIKKIL--SQIRPDRQTLYWSATWPKEVEHLAR--QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ 316 (491)
Q Consensus 243 h~~~~~~--~~~~~~~i~--~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (491)
|++.+|| |++.+..+- +..-++...+.+|||....+++..- ..+..|+.+.-.... ..+...... ....-.+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~NLFYD~~-~K~~I~D 228 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RDNLFYDNH-MKSFITD 228 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hhhhhHHHH-HHHHhhh
Confidence 9999987 777766552 2233677899999999888776433 334556554322211 111100000 0011123
Q ss_pred HHHHHHHHHHhhcc------------CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcE
Q 011188 317 KYNKLVKLLEDIMD------------GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 384 (491)
Q Consensus 317 k~~~l~~~l~~~~~------------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~v 384 (491)
.+..|.++...... .+..||||.|+++|+.++-.|...|+++..+|.++...+|.++.++|.+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 34455554432211 235899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHH
Q 011188 385 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 446 (491)
Q Consensus 385 LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 446 (491)
++||..++.|+|-|+|++|||+++|.|..-|.|--||+||.|....|-++|+..|...+.-|
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876655433
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=260.71 Aligned_cols=333 Identities=22% Similarity=0.332 Sum_probs=261.8
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 89 RDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 89 ~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
++++.+.+..+.|+. +...+++|.|..+|++.+.++++++..|||.||+++|.+|++.. ...+||+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 356677777777764 56678999999999999999999999999999999999999865 556899999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH------HHhhcCCcEEEeChHHHHH------HHhccCccccCcc
Q 011188 168 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV------RDLQKGVEIVIATPGRLID------MLESHNTNLRRVT 235 (491)
Q Consensus 168 t~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~------~~~~~~~~Iiv~T~~~l~~------~l~~~~~~l~~~~ 235 (491)
...|.+.+.-+++.++ +....+....+..... ........+++.||+++.. .+++ ......+.
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeE
Confidence 9999998888888876 3333343333332211 1112346799999998743 2222 33456789
Q ss_pred EEEEccccccccCC--cHHHHHH--HHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeee-
Q 011188 236 YLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD- 310 (491)
Q Consensus 236 ~lIiDEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (491)
+|.+||+|+...|+ |++.+.. ++++.-+...++++|||..+.+...++..+.-...+.+....... ++...+.
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~--nl~yev~q 295 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP--NLKYEVRQ 295 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC--CceeEeee
Confidence 99999999999987 6666553 455555788899999999888877777666544333333322122 2222222
Q ss_pred -ccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec
Q 011188 311 -IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 389 (491)
Q Consensus 311 -~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 389 (491)
....++-.+.+..+++.-..+...||||-+++.|+.++..|+..|+.+..+|..|.+.++.-+-+.|..|+++|+|+|-
T Consensus 296 kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 296 KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 2334566777778887777788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------hhhhcccCC
Q 011188 390 VAARGLDVKDVKYVINYDFPGSLEDYVH-------------------------------------------RIGRTGRAG 426 (491)
Q Consensus 390 ~~~~Gidi~~~~~VI~~~~p~s~~~~~Q-------------------------------------------r~GR~gR~g 426 (491)
+++.|||-|++++||+..+|.|++.|.| -.||+||.+
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 569999999
Q ss_pred CcceEEEEeCccc
Q 011188 427 AKGTAYTFFTAAN 439 (491)
Q Consensus 427 ~~g~~~~~~~~~~ 439 (491)
.+..|++++.-.|
T Consensus 456 ~~a~cilyy~~~d 468 (695)
T KOG0353|consen 456 MKADCILYYGFAD 468 (695)
T ss_pred CcccEEEEechHH
Confidence 9999999988654
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.9e-32 Score=270.68 Aligned_cols=341 Identities=21% Similarity=0.268 Sum_probs=258.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 93 FPDYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 93 l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
....+++.+...=-++||..|++++..|... .+-+++++.|||||++++++++..+.. |.++.+++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEec
Confidence 3444455444333449999999999998853 358999999999999999988887766 88999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HHHhhcC-CcEEEeChHHHHHHHhccCccccCccEEEEccc
Q 011188 167 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 242 (491)
Q Consensus 167 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEa 242 (491)
||.-||.|-++.+.++....++.|..++|....... ...+.++ .+|+|+|. -+..+...+.++.++|+||=
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEecc
Confidence 999999999999999999999999999998754333 3444444 89999994 44455777899999999999
Q ss_pred cccccCCcHHHHHHHHhhcCC-CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHH
Q 011188 243 DRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 321 (491)
Q Consensus 243 h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 321 (491)
|+ |+-.-+..+..-.. .+.++.||||+-+.. ++-....+-..-.++.-. .-...+.-. .+....+...+
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP-~GRkpI~T~--~i~~~~~~~v~ 463 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELP-PGRKPITTV--VIPHERRPEVY 463 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCC-CCCCceEEE--EeccccHHHHH
Confidence 99 56555666655555 689999999985433 333333333222222221 111222222 23333334444
Q ss_pred HHHHHhhccCCeEEEEeCCcccH--------HHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccc
Q 011188 322 VKLLEDIMDGSRILIFMDTKKGC--------DQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 391 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~~~~~~--------~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 391 (491)
..+-+++.++.++.|.|+-+++. ..+++.|+.. ++++..+||.|+.+++++++++|++|+++|||||.++
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 44455677788999999887655 4556666643 5678999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC-CChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCC
Q 011188 392 ARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 456 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 456 (491)
+.|||+|+++++|+.+.- .-.++.-|-.||+||.+....|++++.+...+.++.-++++.+...-
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DG 609 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDG 609 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCc
Confidence 999999999999988864 36889999999999999999999999988767777778888776543
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.9e-33 Score=293.62 Aligned_cols=333 Identities=17% Similarity=0.141 Sum_probs=218.5
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 108 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.|.|||..++..++.. ..+|+..++|.|||..+.+.+ ..+... +...++|||||. .|..||..++.+...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil-~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMII-HQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHH-HHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 6999999998877653 479999999999999876644 443331 234579999998 899999999965331
Q ss_pred CCceEEEEECCccChhhH---HHhhcCCcEEEeChHHHHHHHh-ccCccccCccEEEEccccccccCC--cHHHHHHHHh
Q 011188 186 SKIKSTCIYGGVPKGPQV---RDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILS 259 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~---~~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lIiDEah~~~~~~--~~~~~~~i~~ 259 (491)
+....+.++. ..... .......+++|+|++.+...-. .....-..+++||+||||++.... -...+..+..
T Consensus 224 --l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 224 --LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 3333222221 11000 0111235899999987754111 011222478999999999986321 1122333322
Q ss_pred hcCCCCceEEeccCCcH-HHH------------------HHH-------------H-----------------HHccCC-
Q 011188 260 QIRPDRQTLYWSATWPK-EVE------------------HLA-------------R-----------------QYLYNP- 289 (491)
Q Consensus 260 ~~~~~~~~i~~SAT~~~-~~~------------------~~~-------------~-----------------~~~~~~- 289 (491)
.......++++|||+.. ... .+. . .++.+.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 22345678999999421 000 000 0 000000
Q ss_pred --------------------------------cEEEecCC--Ccc-cccceeeeee------------------------
Q 011188 290 --------------------------------YKVIIGSP--DLK-ANHAIRQHVD------------------------ 310 (491)
Q Consensus 290 --------------------------------~~~~~~~~--~~~-~~~~~~~~~~------------------------ 310 (491)
..+.+... ... ......+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000 000 0000000000
Q ss_pred -------------ccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHH-hCCCceEEEcCCCCHHHHHHHHHH
Q 011188 311 -------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLSE 376 (491)
Q Consensus 311 -------------~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~i~~~~~~~~r~~~~~~ 376 (491)
......|...|.++++... +.|+||||+++..++.+++.|+ ..|+++..+||+|++.+|..+++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 0111245566777776653 5689999999999999999994 669999999999999999999999
Q ss_pred HhCC--CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 377 FKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 377 f~~g--~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+.+++..........+.+.+.+
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9974 589999999999999999999999999999999999999999999999988777766555555555555555
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-33 Score=278.53 Aligned_cols=294 Identities=23% Similarity=0.286 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.+|++||++++..+.. ++..++++|||+|||.+++..+ ..+. ..+|||||+++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~~----------~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELK----------RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHhc----------CCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 8899999999999999876644 3332 23999999999999999887776
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 262 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~ 262 (491)
.... ..+ ..+++..... .. ..|+|+|.+.+.............+++|||||||++.+..+ ..+...+.
T Consensus 104 ~~~~-~~~-g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~ 171 (442)
T COG1061 104 LLLN-DEI-GIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS 171 (442)
T ss_pred cCCc-ccc-ceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh
Confidence 5332 122 2333322211 11 36999999998775211223334799999999999886543 34444443
Q ss_pred CCCceEEeccCCcHHHHHHHHH--HccCCcEEEecCCCc-----ccccceeeeee-------------------------
Q 011188 263 PDRQTLYWSATWPKEVEHLARQ--YLYNPYKVIIGSPDL-----KANHAIRQHVD------------------------- 310 (491)
Q Consensus 263 ~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------------- 310 (491)
....+++||||++......... ....+..+.....+. ..+........
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 3333899999976433111111 111122222221110 01111100000
Q ss_pred -----------ccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC
Q 011188 311 -----------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 379 (491)
Q Consensus 311 -----------~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~ 379 (491)
......+...+..++.....+.+++|||.+..+++.++..+...+. +..+.+..+..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0011122333333333332356899999999999999999998877 8999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhccc
Q 011188 380 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 424 (491)
Q Consensus 380 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR 424 (491)
|.+++||++.++.+|+|+|+++++|...+..|...|+||+||..|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.2e-31 Score=277.12 Aligned_cols=312 Identities=19% Similarity=0.209 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 107 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
..|+++|+++++.+..+ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36999999999999874 789999999999999998876666544 6789999999999999999998753
Q ss_pred CCCCceEEEEECCccChhhH---HHh-hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-----c-HHH
Q 011188 184 ASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-EPQ 253 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-----~-~~~ 253 (491)
+..+..++++.+..+.. ..+ ....+|+|+|++.+. ..+.++++||+||+|...... | ...
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 36788889887654433 222 335799999998763 346789999999999765332 1 112
Q ss_pred HHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChh------hHHHHHHHHHHh
Q 011188 254 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES------QKYNKLVKLLED 327 (491)
Q Consensus 254 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~ 327 (491)
+ .+......+.+++++|||++.+....+.. .....+................+...... .-...+.+.+++
T Consensus 285 v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 285 L-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 22333456789999999987554433321 11111111111100111111111110000 011234444444
Q ss_pred -hccCCeEEEEeCCcc------------------------------------------------------------cHHH
Q 011188 328 -IMDGSRILIFMDTKK------------------------------------------------------------GCDQ 346 (491)
Q Consensus 328 -~~~~~~~lVf~~~~~------------------------------------------------------------~~~~ 346 (491)
+..+.++|||+|++. -+++
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 345668999988632 3367
Q ss_pred HHHHHHhC--CCceEEEcCCCC--HHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCC--CC---------
Q 011188 347 ITRQLRMD--GWPALSIHGDKS--QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--GS--------- 411 (491)
Q Consensus 347 l~~~L~~~--~~~~~~i~~~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p--~s--------- 411 (491)
+++.|++. +.++..+|+++. ..++++++++|++|+.+|||+|+++++|+|+|++++|+.+|.+ -+
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 77888775 678999999986 4678999999999999999999999999999999999765543 22
Q ss_pred -hhHHHHhhhhcccCCCcceEEEEeCccc
Q 011188 412 -LEDYVHRIGRTGRAGAKGTAYTFFTAAN 439 (491)
Q Consensus 412 -~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 439 (491)
...|.|++||+||.+..|.+++.....+
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 3679999999999999999998766544
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.1e-32 Score=290.23 Aligned_cols=304 Identities=22% Similarity=0.277 Sum_probs=213.2
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 011188 113 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 192 (491)
Q Consensus 113 Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~ 192 (491)
..+.+..+..++.+|++|+||||||+ .+|.+..-.. .+...++++.-|.|--|..++..+.+.. +..+..
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~ 141 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGE 141 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHh---CCCcce
Confidence 34566667777889999999999998 4565433221 1123467777898876666666655432 122222
Q ss_pred EECCc-cChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccc-ccccCCcHHH-HHHHHhhcCCCCceEE
Q 011188 193 IYGGV-PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLY 269 (491)
Q Consensus 193 ~~~g~-~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~ 269 (491)
.+|.. .... ....++.|.|+|++.|++.+..+. .+.++++||||||| +.++.+|... +..++.. +++.++|+
T Consensus 142 ~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIl 216 (1283)
T TIGR01967 142 KVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIII 216 (1283)
T ss_pred EEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEE
Confidence 23321 1111 124467899999999999887654 48899999999999 6888887654 4555443 46889999
Q ss_pred eccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC------hhhHHHHHHHHHHhhc--cCCeEEEEeCCc
Q 011188 270 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTK 341 (491)
Q Consensus 270 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~--~~~~~lVf~~~~ 341 (491)
||||++. ..+.+.+...|+ +.+.... ..+...+.... ..++...+...+..+. ..+.+|||+++.
T Consensus 217 mSATld~--~~fa~~F~~apv-I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 217 TSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EeCCcCH--HHHHHHhcCCCE-EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 9999964 567766655554 3333221 12222222111 1234455555554432 346899999999
Q ss_pred ccHHHHHHHHHhCC---CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCC---------
Q 011188 342 KGCDQITRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--------- 409 (491)
Q Consensus 342 ~~~~~l~~~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p--------- 409 (491)
.+++.+++.|++.+ ..+..+||++++++|..+++.+ +..+|+|||+++++|||||++++||+++.+
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998764 3588999999999999987654 346899999999999999999999998843
Q ss_pred ---------CChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 410 ---------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 410 ---------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
.|.++|.||.||+||.+ .|.||.++++.+..
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 36789999999999996 99999999986543
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=280.51 Aligned_cols=348 Identities=19% Similarity=0.262 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC---CCCEEEEEcc
Q 011188 92 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAP 167 (491)
Q Consensus 92 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~---~~~~vlil~P 167 (491)
.+|++-..++. |..+++++|....+.++.+ .++++|||||+|||.++++.+++.+..+...... ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46677766663 4556999999999998876 5799999999999999999999999776542221 2357999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc---CccccCccEEEEccccc
Q 011188 168 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADR 244 (491)
Q Consensus 168 t~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l~~~~~lIiDEah~ 244 (491)
.++|++.|...+.+....++++|...+|+.....+. ..+..|+|+||++. +.+.++ ....+-+.++|+||+|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999988889999999999987644332 23568999999998 444433 22344678999999996
Q ss_pred cccCCcHHHHHHHHhhc-------CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhH
Q 011188 245 MLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 317 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 317 (491)
+-+. .++.++.+..+. ...++++++|||+|+ ..+.+..+..++..+..-... ..+..+.|.+.-+.....
T Consensus 449 LhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 449 LHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred cccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCc
Confidence 6554 578887776554 246789999999997 555655555555333322222 344455555544443222
Q ss_pred -------HHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC------------------------------------
Q 011188 318 -------YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------ 354 (491)
Q Consensus 318 -------~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------ 354 (491)
.+.+.+.+-+.....++|||+.++++..+.++.++..
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 1233344444444579999999999988888777521
Q ss_pred -CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE----EcCC------CCChhHHHHhhhhcc
Q 011188 355 -GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTG 423 (491)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI----~~~~------p~s~~~~~Qr~GR~g 423 (491)
.+.+..+|++|+..+|..+.+.|..|.++|||+|..+++|+|+|..+++| .||+ +.++.+..||+||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 14467899999999999999999999999999999999999999888777 3554 347999999999999
Q ss_pred cCCCc--ceEEEEeCcccHHHHHHHHH
Q 011188 424 RAGAK--GTAYTFFTAANARFAKELIT 448 (491)
Q Consensus 424 R~g~~--g~~~~~~~~~~~~~~~~l~~ 448 (491)
|.+.+ |..++....++..+...+++
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhh
Confidence 98755 56666666666555555444
No 86
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.2e-30 Score=272.50 Aligned_cols=353 Identities=20% Similarity=0.237 Sum_probs=224.4
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..+|+|+|..+.........+|+.+|||+|||.+++.++...+.. +....++|..||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 348999999886554445668999999999999987765543322 22467999999999999999998763321
Q ss_pred C--CceEEEEECCccChhhH---------------------HHh---hc---CCcEEEeChHHHHHHHhc-cCccccCc-
Q 011188 186 S--KIKSTCIYGGVPKGPQV---------------------RDL---QK---GVEIVIATPGRLIDMLES-HNTNLRRV- 234 (491)
Q Consensus 186 ~--~~~v~~~~~g~~~~~~~---------------------~~~---~~---~~~Iiv~T~~~l~~~l~~-~~~~l~~~- 234 (491)
. ...+...+|........ .-+ .+ -.+|+|+|...++..+.. ....+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1 23566666654321100 001 11 158999999887654332 22223333
Q ss_pred ---cEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccCCcHHHHHH-HHHHccC-C------cEEE--ecCC---
Q 011188 235 ---TYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL-ARQYLYN-P------YKVI--IGSP--- 297 (491)
Q Consensus 235 ---~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~-~~~~~~~-~------~~~~--~~~~--- 297 (491)
++|||||+|.+- ......+..+++.+ ....++|+||||+|....+. ...+... + +... ....
T Consensus 438 La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 489999999763 22334555555544 24567999999999876543 3333211 0 0000 0000
Q ss_pred C--cccc---cceeeeeec--c--Ch-hhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCC---CceEEEcCC
Q 011188 298 D--LKAN---HAIRQHVDI--V--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 364 (491)
Q Consensus 298 ~--~~~~---~~~~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~i~~~ 364 (491)
. .... ......+.+ . .. ......+..+++....++++||||||++.|..+++.|++.+ .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 0000 000111111 1 11 11223333444445567799999999999999999998764 579999999
Q ss_pred CCHHHH----HHHHHHH-hCCC---CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCc----c---
Q 011188 365 KSQAER----DWVLSEF-KAGK---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----G--- 429 (491)
Q Consensus 365 ~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g--- 429 (491)
++..+| +++++.| ++++ ..|||||+++++|||| +++++|....| ...++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4567788 5665 4699999999999999 68999998888 78999999999998763 2
Q ss_pred -eEEEEeCcc-----------cHHHHHHHHHHHHHhC---CCCCHHHHhhccCC
Q 011188 430 -TAYTFFTAA-----------NARFAKELITILEEAG---QKVSPELAAMGRGA 468 (491)
Q Consensus 430 -~~~~~~~~~-----------~~~~~~~l~~~l~~~~---~~~~~~l~~~~~~~ 468 (491)
.++++.... +...+..-...|.+.+ ..+|+....+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 233332211 1223344446666665 56788877766544
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.6e-31 Score=271.26 Aligned_cols=319 Identities=17% Similarity=0.191 Sum_probs=231.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
-++|+-.+.+-.+.-++.-|+.++||+|||++|.+|++..+.. +..|+||+||++||.|.++++..+...++
T Consensus 80 g~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 80 GLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 3455555555555555667999999999999999999987765 45699999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc-Cccc-----cCccEEEEccccccccC------------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDM------------ 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~l-----~~~~~lIiDEah~~~~~------------ 248 (491)
+++.+++++.+....... ..++|+|+||++| .+++... ..++ ..+.++|+||||.|+=.
T Consensus 152 Ltv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 999999999776555443 3689999999999 8888765 3333 58999999999986510
Q ss_pred ----CcHHHHHHHHhhcCC--------------CC---------------------------------------------
Q 011188 249 ----GFEPQIKKILSQIRP--------------DR--------------------------------------------- 265 (491)
Q Consensus 249 ----~~~~~~~~i~~~~~~--------------~~--------------------------------------------- 265 (491)
.....+..++..+.. ..
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 011122222222211 11
Q ss_pred -----------------------------------------------------------------------ceEEeccCC
Q 011188 266 -----------------------------------------------------------------------QTLYWSATW 274 (491)
Q Consensus 266 -----------------------------------------------------------------------~~i~~SAT~ 274 (491)
++.+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 222233332
Q ss_pred cHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHh
Q 011188 275 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM 353 (491)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~ 353 (491)
..+..++...|..+.+.+.... .....-.....+.....|...+.+.+.+. ..+.|+||||+|++.++.++..|.+
T Consensus 390 ~te~~Ef~~iY~l~Vv~IPtnk---p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVIPTNR---SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCCCEEECCCCC---CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2222222222221111110000 00000111223345667888888777654 4577999999999999999999999
Q ss_pred CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC----------------------------------
Q 011188 354 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD---------------------------------- 399 (491)
Q Consensus 354 ~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~---------------------------------- 399 (491)
.++++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 9999999999999852
Q ss_pred ----CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 400 ----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 400 ----~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.-
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 127888889999999999999999999999999999877643
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.2e-30 Score=269.91 Aligned_cols=364 Identities=20% Similarity=0.220 Sum_probs=270.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc----C--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~----~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
++.+......+...--.+-||-|..||..+.. + .|-++|+..|-|||.+++-+++..+.. |++|.|
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAv 648 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAV 648 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEE
Confidence 34566777777765555899999999999874 3 378999999999999999988888776 899999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEc
Q 011188 165 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 240 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiD 240 (491)
||||.-||+|-++.|++-.....++|..+.-=.+..++.. .+.. ..||+|+|. .+.+....+++++++|||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEe
Confidence 9999999999999999888888899988876555544433 3333 489999994 333456778999999999
Q ss_pred cccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHH
Q 011188 241 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 320 (491)
Q Consensus 241 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 320 (491)
|-|+ |+-.-++-++.++.+.-++-||||+-+-...++-.-+.+-..+.... .....++-.+. +.+....
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP---~~R~pV~T~V~---~~d~~~i 792 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP---EDRLPVKTFVS---EYDDLLI 792 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC---CCCcceEEEEe---cCChHHH
Confidence 9999 56666777888889999999999985545455444333333222111 22223333332 2222222
Q ss_pred HHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC
Q 011188 321 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 398 (491)
Q Consensus 321 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~ 398 (491)
=..+++++..++++...+|..+..+.+++.|+.. ..++.+.||.|+..+-+.++..|-+|+++|||||.+++.|||||
T Consensus 793 reAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 793 REAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 2345566777889999999999999999999876 45688999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCC-ChhHHHHhhhhcccCCCcceEEEEeCccc--HHHHHHHHHHH---HHhCCCCCHHHHhhccCCCC-C
Q 011188 399 DVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITIL---EEAGQKVSPELAAMGRGAPP-S 471 (491)
Q Consensus 399 ~~~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l---~~~~~~~~~~l~~~~~~~~~-~ 471 (491)
++|++|.-+... -.++..|..||+||..+.+.||.++.+.. .+.+.+-++.+ .+-|.-+.-.+.||.-.+.| -
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNl 952 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNL 952 (1139)
T ss_pred CCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccc
Confidence 999999877653 68899999999999999999999988642 22233333333 33455555566666644433 3
Q ss_pred CCCCCCC
Q 011188 472 SGHGGFR 478 (491)
Q Consensus 472 ~~~~~~~ 478 (491)
-|..++|
T Consensus 953 LG~eQSG 959 (1139)
T COG1197 953 LGEEQSG 959 (1139)
T ss_pred cCccccC
Confidence 3433333
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=6.8e-31 Score=237.69 Aligned_cols=202 Identities=52% Similarity=0.868 Sum_probs=183.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 88 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 88 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
|+++++++.+.+.+...++..|+++|.++++.+.+++++++++|||+|||++|++|++.++.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999988742 124788999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccccc
Q 011188 168 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 168 t~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
+++|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+.|.+.+.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778899999998877666666666889999999999999888777888999999999999998
Q ss_pred CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEE
Q 011188 248 MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 292 (491)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 292 (491)
.++...+..++..++...+++++|||+++.+..+...++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999998899999999999999999999998887754
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=3.7e-31 Score=265.46 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=233.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
++|-.+|++||-++..|.++++.|+|.+|||+++..++...-. ++.++++.+|-++|-+|-++.|+.-....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhcccc
Confidence 4899999999999999999999999999999997765543322 37889999999999999999999655443
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~ 266 (491)
+ .++|+... +..+.++|+|.+.|.+++.++..-++++.+|||||+|.+.+...+..+++++-.+|++.+
T Consensus 368 g----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 3 67787754 445789999999999999998888899999999999999999999999999999999999
Q ss_pred eEEeccCCcHHHHHHHHHHccC-CcEEEecCCCcccccceeeeeecc---------------------------------
Q 011188 267 TLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIV--------------------------------- 312 (491)
Q Consensus 267 ~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 312 (491)
+|++|||.|+.. +++.+.... ...+.+.+.. ..+..+.+++...
T Consensus 437 ~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 437 FILLSATVPNTL-EFADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEEEeccCCChH-HHHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 999999999854 566554321 1111111100 1111111111000
Q ss_pred ------------------------------ChhhHH--HHHHHHHHhhccC--CeEEEEeCCcccHHHHHHHHHhCCC--
Q 011188 313 ------------------------------SESQKY--NKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGW-- 356 (491)
Q Consensus 313 ------------------------------~~~~k~--~~l~~~l~~~~~~--~~~lVf~~~~~~~~~l~~~L~~~~~-- 356 (491)
....+. ....+++..+... -|++|||-+++.|++.++.|...++
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 000111 2355555555433 3899999999999999999954321
Q ss_pred -------------------------------------ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC
Q 011188 357 -------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 399 (491)
Q Consensus 357 -------------------------------------~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~ 399 (491)
.+.++||++-+--++-+...|..|-++||+||.+++.|||.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 1457899999999999999999999999999999999999997
Q ss_pred CCEEEEcCC---------CCChhHHHHhhhhcccCCCc--ceEEEEeCc
Q 011188 400 VKYVINYDF---------PGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 437 (491)
Q Consensus 400 ~~~VI~~~~---------p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~ 437 (491)
-.+|+. .. --.+.+|.||+|||||.|-+ |+++++...
T Consensus 675 RtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 675 RTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 666662 22 12588999999999999865 776666554
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=3e-30 Score=265.83 Aligned_cols=317 Identities=20% Similarity=0.236 Sum_probs=237.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|.-+.-.+.+| -|+.++||+|||+++.+|++...+. +..|-|++||..||.|.++++..+...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 6777777666555444 5999999999999999999644443 44577999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccC------ccccCccEEEEccccccccC------------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLDM------------ 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~~~~~lIiDEah~~~~~------------ 248 (491)
+++.++.++.+...+...+ .++|+++|++.| .+++.... ..++.+.++||||||.|+=.
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988776555543 489999999999 88887653 23678999999999985510
Q ss_pred ----CcHHHHHHHHhhcCCC------------------------------------------------------------
Q 011188 249 ----GFEPQIKKILSQIRPD------------------------------------------------------------ 264 (491)
Q Consensus 249 ----~~~~~~~~i~~~~~~~------------------------------------------------------------ 264 (491)
.....+..+...+..+
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111222222222110
Q ss_pred ---------------------------------------------------------CceEEeccCCcHHHHHHHHHHcc
Q 011188 265 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 287 (491)
Q Consensus 265 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 287 (491)
.++.+||+|...+..++...|..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 14456666665555555554443
Q ss_pred CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 288 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.+.+....+ ....-...........|...+.+.+.+. ..+.|+||||+|++.++.++..|.+.++++..+|+.
T Consensus 389 ~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIPTNRP---MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 3332211111 1111112233446678899999888764 456799999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC--------------------------------------CEEEEcCC
Q 011188 367 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------------KYVINYDF 408 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~--------------------------------------~~VI~~~~ 408 (491)
+.+|+..+..|..+...|+|||++++||+||+-- -+||-...
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7899999999999999999999999999999632 27888999
Q ss_pred CCChhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 409 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 409 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
+.|..--.|-.||+||.|.+|.+..|++-.|.-
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 999999999999999999999999999877643
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-29 Score=255.51 Aligned_cols=291 Identities=20% Similarity=0.240 Sum_probs=194.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---H
Q 011188 127 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---V 203 (491)
Q Consensus 127 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~ 203 (491)
++.++||||||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 478999999999987654443332 6789999999999999999998743 3567788887655433 3
Q ss_pred HHhh-cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-----cH-HHHHHHHhhcCCCCceEEeccCCcH
Q 011188 204 RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-PQIKKILSQIRPDRQTLYWSATWPK 276 (491)
Q Consensus 204 ~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-----~~-~~~~~i~~~~~~~~~~i~~SAT~~~ 276 (491)
..+. ...+|+|+|+..+. ..+.++++|||||+|....+. |. ..+... .....+.++|++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCH
Confidence 3333 34799999998763 346789999999999876432 11 122222 233357889999999764
Q ss_pred HHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChh---hHHHHHHHHHHh-hccCCeEEEEeCCccc---------
Q 011188 277 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYNKLVKLLED-IMDGSRILIFMDTKKG--------- 343 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~~lVf~~~~~~--------- 343 (491)
+....+. ......+..............+.+...... .-...+.+.+++ +..++++|||+|++..
T Consensus 142 es~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 4333322 111111111111001111111112111111 011234444443 4456789999887654
Q ss_pred ---------------------------------------------------HHHHHHHHHhC--CCceEEEcCCCCHHHH
Q 011188 344 ---------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER 370 (491)
Q Consensus 344 ---------------------------------------------------~~~l~~~L~~~--~~~~~~i~~~~~~~~r 370 (491)
.+++++.|++. +.++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 37778888776 6789999999987665
Q ss_pred --HHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC------------ChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 371 --DWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 371 --~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~------------s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
+.+++.|++|+.+|||+|+++++|+|+|++++|+.++.+. ....|.|++||+||.++.|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999986544432 24678999999999999999886654
Q ss_pred cc
Q 011188 437 AA 438 (491)
Q Consensus 437 ~~ 438 (491)
..
T Consensus 380 ~p 381 (505)
T TIGR00595 380 NP 381 (505)
T ss_pred CC
Confidence 33
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.7e-29 Score=257.35 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=128.8
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCC
Q 011188 89 RDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 160 (491)
Q Consensus 89 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 160 (491)
+.+.+..++.+.+. ..||..| +|+|.++++.++.++++++.++||+|||++|++|++..+.. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 45678888887776 5788888 99999999999999999999999999999999999988765 22
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhccCcccc-------
Q 011188 161 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHNTNLR------- 232 (491)
Q Consensus 161 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~~~l~------- 232 (491)
.++||+||++||.|.++++..+...+++++.+++||.+...+...+ .++|+|+||++| .+++......++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 4899999999999999999999999999999999999887776554 589999999999 999987655544
Q ss_pred CccEEEEccccccc
Q 011188 233 RVTYLVLDEADRML 246 (491)
Q Consensus 233 ~~~~lIiDEah~~~ 246 (491)
.+.++|+||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 45899999999866
No 94
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=261.25 Aligned_cols=310 Identities=19% Similarity=0.255 Sum_probs=239.0
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.+++-|+|..+|..+-.++++++.|.|.+|||.++..++.+.+.. .-+|++.+|-++|-+|-++++..-...
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 358999999999999999999999999999999999988877776 668999999999999999998864433
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
|...+|+... ...+.-+|+|.+.|..++.++.--++.+.+|||||+|.|-+...+-.|++.+-.++++.
T Consensus 199 ----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 ----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 4455666544 34567899999999999998877788999999999999999988888888888899999
Q ss_pred ceEEeccCCcHHHHHHHHHHc---cCCcEEEecCCCcccccceeeeee---------ccCh-----hhHHH---------
Q 011188 266 QTLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVD---------IVSE-----SQKYN--------- 319 (491)
Q Consensus 266 ~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~k~~--------- 319 (491)
+.+++|||+|+. .+++.+.+ ..|..++..... +..+++++. ++++ ++.+.
T Consensus 268 r~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 268 RFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred eEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999985 45666543 345555443322 122222211 1111 11111
Q ss_pred --------------------------HHHHHHHhhcc--CCeEEEEeCCcccHHHHHHHHHhCCCc--------------
Q 011188 320 --------------------------KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWP-------------- 357 (491)
Q Consensus 320 --------------------------~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~-------------- 357 (491)
.+..+++.+.. ..++|||+-++++|+.++-.+.+..++
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 22233333222 248999999999999999888665433
Q ss_pred -------------------------eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEE----cCC
Q 011188 358 -------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF 408 (491)
Q Consensus 358 -------------------------~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~----~~~ 408 (491)
+..+|+++-+--++-+.-.|+.|-+++|+||.+++.|+|.|.-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 337799999999999999999999999999999999999997666662 221
Q ss_pred ----CCChhHHHHhhhhcccCCCc--ceEEEEeCcc
Q 011188 409 ----PGSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 438 (491)
Q Consensus 409 ----p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 438 (491)
..|.-+|+||.|||||.|.+ |.+++++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 12678999999999999875 8888888864
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-29 Score=258.23 Aligned_cols=316 Identities=20% Similarity=0.250 Sum_probs=230.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|.-+.-.+.+|+ |+.+.||+|||+++.+|++..... |..|-|++|+.-||.|-++++..+...++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 67777877766655554 999999999999999999888776 77899999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHH-HHHhcc------CccccCccEEEEccccccccC------------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDM------------ 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lIiDEah~~~~~------------ 248 (491)
+++.++.++...... .-...++|+++|...|- ++|... ......+.+.||||+|.++=.
T Consensus 150 l~vg~i~~~~~~~~r--~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEK--RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHH--HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 999999887655433 33446899999987763 233321 112456889999999975410
Q ss_pred -C---cHHHHHHHHhhcCCC------------------------------------------------------------
Q 011188 249 -G---FEPQIKKILSQIRPD------------------------------------------------------------ 264 (491)
Q Consensus 249 -~---~~~~~~~i~~~~~~~------------------------------------------------------------ 264 (491)
. ....+..++..+...
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0 111111111111100
Q ss_pred --------------------------------------------------------------------CceEEeccCCcH
Q 011188 265 --------------------------------------------------------------------RQTLYWSATWPK 276 (491)
Q Consensus 265 --------------------------------------------------------------------~~~i~~SAT~~~ 276 (491)
.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 133455555544
Q ss_pred HHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCC
Q 011188 277 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDG 355 (491)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 355 (491)
+..++...|..+.+.+ .... .....-.....+.+...|...+.+.+... ..+.++||||+|+..++.++..|.+.+
T Consensus 388 e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 3344433333222211 1110 00111111223345677888888888654 456799999999999999999999999
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHHhhhhcccCCC
Q 011188 356 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGA 427 (491)
Q Consensus 356 ~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~---~~~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~ 427 (491)
+++..+|+.+...++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888888877776 999999999999995 788 99999999999999999999999999
Q ss_pred cceEEEEeCcccH
Q 011188 428 KGTAYTFFTAANA 440 (491)
Q Consensus 428 ~g~~~~~~~~~~~ 440 (491)
+|.+..|++..|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999998754
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=7.6e-29 Score=263.32 Aligned_cols=315 Identities=20% Similarity=0.240 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+|+|||.+++.++. .+.+.|++.++|.|||+..+. ++.++... .+....+|||||. .+..||.+++.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~----~~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY----RGITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh----cCCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999876 467899999999999988544 55555432 1123458999997 67788999999998
Q ss_pred CCCCceEEEEECCccChhhHHH---hhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~---~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
+. +.+..++|.......... .....+|+|+|++.+...... +.--.+++||+||||++.+. ...+..++..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 65 566667765432222111 123578999999998664322 22235789999999998864 3344555556
Q ss_pred cCCCCceEEeccCCcH-HHHH---HHHHH-------------------------------------------------cc
Q 011188 261 IRPDRQTLYWSATWPK-EVEH---LARQY-------------------------------------------------LY 287 (491)
Q Consensus 261 ~~~~~~~i~~SAT~~~-~~~~---~~~~~-------------------------------------------------~~ 287 (491)
+. ....+++|+|+-. ...+ ++..+ +.
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 64 4456889999521 1111 10000 00
Q ss_pred CCcEEE--ecCCCc----------------cccc------c-eee----------------------eeeccChhhHHHH
Q 011188 288 NPYKVI--IGSPDL----------------KANH------A-IRQ----------------------HVDIVSESQKYNK 320 (491)
Q Consensus 288 ~~~~~~--~~~~~~----------------~~~~------~-~~~----------------------~~~~~~~~~k~~~ 320 (491)
...... +..... .... . +.+ .-..+....|...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000000 000000 0000 0 000 0001123456777
Q ss_pred HHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCC---CcEEEEeccccccCC
Q 011188 321 LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARGLD 396 (491)
Q Consensus 321 l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~~Gid 396 (491)
|..++..+. .+.++|||+......+.|.++|...++.+..++|+++..+|..+++.|++.. ..+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 777777654 4569999999999999999999999999999999999999999999998642 357899999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEe
Q 011188 397 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 435 (491)
Q Consensus 397 i~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 435 (491)
+..+++||+||+|||+....|++||++|.|++..+.++.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 999999999999999999999999999999987655543
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.9e-29 Score=260.52 Aligned_cols=312 Identities=21% Similarity=0.262 Sum_probs=233.6
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
++|-++|++++..+..+.+++++||||+|||+++..++...+.. +.++++.+|.++|.+|.+.++.......
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 48999999999999999999999999999999988877766665 6669999999999999999988533222
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~ 266 (491)
.-.+..++|+... ..++.++|+|.+.|.+++..+...+.++.+|||||+|.|.+...+..++.++-.++.+.+
T Consensus 190 ~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 2234666776654 456789999999999999998888999999999999999999999999999999999999
Q ss_pred eEEeccCCcHHHHHHHHHHc---cCCcEEEecCCCcccccceeeeeecc-------ChhhH-------------------
Q 011188 267 TLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVDIV-------SESQK------------------- 317 (491)
Q Consensus 267 ~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~k------------------- 317 (491)
+++||||.|+. .++..++. ..|..++.... .+..+.+++... +...+
T Consensus 263 ~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 263 FVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred EEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 99999999874 44554443 23444433321 122222222111 10000
Q ss_pred -------------------------HHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhC----------------
Q 011188 318 -------------------------YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD---------------- 354 (491)
Q Consensus 318 -------------------------~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~---------------- 354 (491)
...-.+++..+. ...++|+|+-+++.|+.++..+...
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 000011222221 1238999999999998888776421
Q ss_pred ------------CCc-------------eEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEE----E
Q 011188 355 ------------GWP-------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----N 405 (491)
Q Consensus 355 ------------~~~-------------~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI----~ 405 (491)
+++ +..+|+++-+..+..+...|..|-++|+++|.+++.|+|.|.-++|+ .
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K 498 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSK 498 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEE
Confidence 111 23679999999999999999999999999999999999999766665 1
Q ss_pred cC----CCCChhHHHHhhhhcccCCCc--ceEEEEeCc
Q 011188 406 YD----FPGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 437 (491)
Q Consensus 406 ~~----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~ 437 (491)
+| .+-++.+|.|+.|||||.|.+ |.+++...+
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 22 233689999999999999976 777776443
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.2e-27 Score=214.22 Aligned_cols=308 Identities=20% Similarity=0.229 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+++|.|+.+-..++ +.++.|+.|-||+|||.+ +.+.+...+.+ |.++.+.+|+...+..++..++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 79999999877654 568999999999999976 55566666653 8889999999999999999998754
Q ss_pred CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCC
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 263 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~ 263 (491)
.. ..+.++||+..... ..+++|+|...|+++-+ .++++|+||+|.+.-..-......+-+...+
T Consensus 169 ~~--~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 169 SN--CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred cc--CCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 43 66788998775422 25899999999987744 4789999999987654422223334444556
Q ss_pred CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHH------HHHHHHHhhc-cCCeEEE
Q 011188 264 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN------KLVKLLEDIM-DGSRILI 336 (491)
Q Consensus 264 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~l~~~l~~~~-~~~~~lV 336 (491)
...+|.+|||.++..++-+..- +...+.+....-..+..+...+.......++. .|...|+... .+.+++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred cCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 7788999999987665544322 22222222221122222333333333333332 4556666543 4569999
Q ss_pred EeCCcccHHHHHHHHHhC-C-CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCC--CCh
Q 011188 337 FMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP--GSL 412 (491)
Q Consensus 337 f~~~~~~~~~l~~~L~~~-~-~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p--~s~ 412 (491)
|+++++.++.++..|++. . ..+..+|+. ...|.+..++|++|++++||+|.++++|+.+|++++.+.-.-- .+.
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 999999999999999543 2 345677876 3468889999999999999999999999999999987754433 678
Q ss_pred hHHHHhhhhcccCCC--cceEEEEeCcccHHHH
Q 011188 413 EDYVHRIGRTGRAGA--KGTAYTFFTAANARFA 443 (491)
Q Consensus 413 ~~~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~~ 443 (491)
+..+|..||+||.-. +|..+.|..-..+.+.
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 999999999999643 3665544433344433
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.8e-28 Score=265.33 Aligned_cols=308 Identities=16% Similarity=0.201 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHHHhh----c-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 107 FEPTPIQAQGWPMAL----K-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~----~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
..|++||.+||..+. . .++.+++++||||||.+++. ++..+... ...+++|||+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 469999999998765 2 35799999999999988544 44444432 1256899999999999999999998
Q ss_pred hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-----CccccCccEEEEccccccccC--------
Q 011188 182 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDM-------- 248 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lIiDEah~~~~~-------- 248 (491)
+..........+++...... ........|+|+|+++|...+... ...+..+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 75332211111121110000 011234689999999998765321 134678999999999995310
Q ss_pred -------CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHH--------------HHcc---CCcEEEecC--CCc--c
Q 011188 249 -------GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR--------------QYLY---NPYKVIIGS--PDL--K 300 (491)
Q Consensus 249 -------~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~--------------~~~~---~~~~~~~~~--~~~--~ 300 (491)
.+...+..++..+. ...|+||||+......+.. -++. .|+.+.... ... .
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 12457778887663 4679999998543221110 0111 011111100 000 0
Q ss_pred cccce---e---eee--eccCh---------------hhHHHHHHH-HHHhhc--cCCeEEEEeCCcccHHHHHHHHHhC
Q 011188 301 ANHAI---R---QHV--DIVSE---------------SQKYNKLVK-LLEDIM--DGSRILIFMDTKKGCDQITRQLRMD 354 (491)
Q Consensus 301 ~~~~~---~---~~~--~~~~~---------------~~k~~~l~~-~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~ 354 (491)
....+ . ..+ ...++ ......+++ +++.+. ..+++||||.++++|+.+++.|++.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00000 0 000 00000 001111122 221111 2358999999999999999888653
Q ss_pred ------CC---ceEEEcCCCCHHHHHHHHHHHhCCCC-cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhccc
Q 011188 355 ------GW---PALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 424 (491)
Q Consensus 355 ------~~---~~~~i~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR 424 (491)
++ .+..++|+.+ ++..++++|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 12 4567888875 46789999999887 589999999999999999999999999999999999999999
Q ss_pred CC
Q 011188 425 AG 426 (491)
Q Consensus 425 ~g 426 (491)
.-
T Consensus 800 ~~ 801 (1123)
T PRK11448 800 LC 801 (1123)
T ss_pred CC
Confidence 64
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.8e-28 Score=248.31 Aligned_cols=317 Identities=18% Similarity=0.206 Sum_probs=227.9
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
++|+-.+.+-.+.-++.-|+.++||.|||++|.+|++...+. +..|.||+|+..||.|..+++..+...+++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 344444445555545677999999999999999999887776 555999999999999999999999999999
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc-Cccc-----cCccEEEEccccccccCC------------
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG------------ 249 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~l-----~~~~~lIiDEah~~~~~~------------ 249 (491)
++.++.++.+.. .+.....++|+++||+.| .+++... .... ..+.++||||+|.++-..
T Consensus 153 sv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 999999887652 233334789999999999 7887765 2232 678999999999765211
Q ss_pred ----cHHHHHHHHhhcC-------------------CCC-----------------------------------------
Q 011188 250 ----FEPQIKKILSQIR-------------------PDR----------------------------------------- 265 (491)
Q Consensus 250 ----~~~~~~~i~~~~~-------------------~~~----------------------------------------- 265 (491)
....+..++..+. ...
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 1111111111111 001
Q ss_pred ---------------------------------------------------------------------------ceEEe
Q 011188 266 ---------------------------------------------------------------------------QTLYW 270 (491)
Q Consensus 266 ---------------------------------------------------------------------------~~i~~ 270 (491)
++.+|
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 22233
Q ss_pred ccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHH
Q 011188 271 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITR 349 (491)
Q Consensus 271 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~ 349 (491)
|+|...+..++...|..+.+.+....+ ....-.....+.....|...+++.+.++ ..+.++||||.|++.++.++.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkp---~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNRP---MVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLAR 467 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCCC---ccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHH
Confidence 333322222222222211111110000 0000111122344567888888777665 456799999999999999999
Q ss_pred HHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC------------------------------
Q 011188 350 QLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD------------------------------ 399 (491)
Q Consensus 350 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~------------------------------ 399 (491)
.|...++++..+|+..++.++..+.+.|+.|. |+|||++++||+||.-
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999998 9999999999999851
Q ss_pred -------CCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 400 -------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 400 -------~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12789899999999999999999999999999999998765
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=9.1e-28 Score=242.93 Aligned_cols=351 Identities=21% Similarity=0.256 Sum_probs=246.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHH--HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i--~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
..+...+++....-..+..|...++.||.+++ +.++.+++.|..+||+.|||+++.+-++..+... ...++
T Consensus 201 ~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~l 273 (1008)
T KOG0950|consen 201 FGFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVL 273 (1008)
T ss_pred hhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhcee
Confidence 33444344444444445678889999999998 5688999999999999999999999888888763 56689
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc--cCccccCccEEEEcc
Q 011188 164 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDE 241 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lIiDE 241 (491)
.+.|-...+..-...+..+....++.+.+.+|..+.... .+...+.|||.++-..++.. ..-.+..+++||+||
T Consensus 274 lilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 274 LILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred EecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 999999888888888889998999999888866554332 23458999999985443322 112345789999999
Q ss_pred ccccccCCcHHHHHHHHhhc-----CCCCceEEeccCCcHHHHHHHHHHccCCcEEE-ecCCCcccccceeeeeeccChh
Q 011188 242 ADRMLDMGFEPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVI-IGSPDLKANHAIRQHVDIVSES 315 (491)
Q Consensus 242 ah~~~~~~~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 315 (491)
.|.+.+.+.+..++.++..+ ....|+|+||||+++ +..+ ..++...+... +....+.....+-..++.....
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL-~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~ 427 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLL-QDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRN 427 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHH-HHHhhhhheecccCcccchhccCCCcccccchhh
Confidence 99999998887777776553 344679999999986 3333 33332211111 1111111111111111111100
Q ss_pred hHH----------------HHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhC------------------------
Q 011188 316 QKY----------------NKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD------------------------ 354 (491)
Q Consensus 316 ~k~----------------~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------ 354 (491)
.-. +.+..++.+ ..++.++||||++++.|+.++..+...
T Consensus 428 ~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr 507 (1008)
T KOG0950|consen 428 KVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLR 507 (1008)
T ss_pred HHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhh
Confidence 001 122222222 234457999999999999988655210
Q ss_pred --------------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcC----CCCChhHHH
Q 011188 355 --------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD----FPGSLEDYV 416 (491)
Q Consensus 355 --------------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~----~p~s~~~~~ 416 (491)
.+.++.+|.+++.++|+.+...|+.|...|++||+.++.|+|+|..+++|-+- ...+..+|.
T Consensus 508 ~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Yk 587 (1008)
T KOG0950|consen 508 RIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYK 587 (1008)
T ss_pred cCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHH
Confidence 13366889999999999999999999999999999999999999988888432 234678999
Q ss_pred HhhhhcccCCCc--ceEEEEeCcccHHHHHHHHHH
Q 011188 417 HRIGRTGRAGAK--GTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 417 Qr~GR~gR~g~~--g~~~~~~~~~~~~~~~~l~~~ 449 (491)
||+|||||+|-+ |.+++++.+.+......++..
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~ 622 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNS 622 (1008)
T ss_pred hhhhhhhhcccccCcceEEEeeccchhHHHHHHhc
Confidence 999999999854 889999999988776655443
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-27 Score=247.36 Aligned_cols=310 Identities=21% Similarity=0.293 Sum_probs=218.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCC
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSK 187 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~ 187 (491)
.+....+.+.++.+++.+||+++||||||+. +| +.+++... ..+.++.+.-|+|-=|..+++.+.+ ++...+
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP--~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LP--QFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HH--HHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3445667777788889999999999999986 33 23333221 2355788888998555556655553 333333
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCCcH-HHHHHHHhhcCCCC
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFE-PQIKKILSQIRPDR 265 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~~~-~~~~~i~~~~~~~~ 265 (491)
-.|.... ...........|-++|.+.|++.+..+.. ++.+++||+||+|. -++.++. ..+..++...+++.
T Consensus 124 ~~VGY~i------Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSI------RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEE------EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 2222111 11122244578999999999999987554 88999999999994 3444433 23445566777789
Q ss_pred ceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeec-cChhh-HHHHHHHHHHhhc--cCCeEEEEeCCc
Q 011188 266 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI-VSESQ-KYNKLVKLLEDIM--DGSRILIFMDTK 341 (491)
Q Consensus 266 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-k~~~l~~~l~~~~--~~~~~lVf~~~~ 341 (491)
++|.||||+.. +++...+...|+..+-+.. ..+...+.. ..... -...+...+..+. ..+.+|||.+..
T Consensus 197 KiIimSATld~--~rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~ 269 (845)
T COG1643 197 KLIIMSATLDA--ERFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQ 269 (845)
T ss_pred eEEEEecccCH--HHHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcH
Confidence 99999999954 5566655545544432221 223333311 11222 3444444444433 345799999999
Q ss_pred ccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC---------
Q 011188 342 KGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--------- 408 (491)
Q Consensus 342 ~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~--------- 408 (491)
.+.+.+++.|.+ ....+..+||.++.+++..+++--..|+.+|++||++++++|.||++.+||+-+.
T Consensus 270 ~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~ 349 (845)
T COG1643 270 REIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPR 349 (845)
T ss_pred HHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccc
Confidence 999999999987 3467899999999999999988888887889999999999999999999996553
Q ss_pred ---------CCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 409 ---------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 409 ---------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|.|.++..||.|||||. .+|.||-+|++++.
T Consensus 350 ~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 350 TGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred cCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 44889999999999999 59999999998543
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.8e-27 Score=228.76 Aligned_cols=306 Identities=23% Similarity=0.308 Sum_probs=212.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-----Hh
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-----KF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-----~~ 182 (491)
....+-.+.+..+..++-+|+.++||||||+. +-+++.+..... .| ++.+.-|+|--|..+++... .+
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~--~g-~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFAS--SG-KIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhccccc--CC-cEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 34555667778888899999999999999985 335554433222 23 38888999855555544444 23
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCC-cHHHHHHHHhh
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMG-FEPQIKKILSQ 260 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~-~~~~~~~i~~~ 260 (491)
+...++.+ -+.+. ......|.+.|.+.|++.+..+. .++++++||+||||. -+..+ ..-.++++++.
T Consensus 124 G~~VGY~I--RFed~--------ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 124 GEEVGYTI--RFEDS--------TSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred CceeeeEE--Eeccc--------CCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 33333222 12211 12346899999999999877644 488999999999994 22111 11233333333
Q ss_pred cCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh---ccCCeEEEE
Q 011188 261 IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIF 337 (491)
Q Consensus 261 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lVf 337 (491)
+++.++|.+|||+. .+.+...|...|+..+-+.. ..+...+...+..+.....+..+.++ .+.+-+|||
T Consensus 193 -R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvF 264 (674)
T KOG0922|consen 193 -RPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVF 264 (674)
T ss_pred -CCCceEEEEeeeec--HHHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEE
Confidence 46789999999995 45566666555665544332 23333333334444444444333332 344579999
Q ss_pred eCCcccHHHHHHHHHhC----CC----ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC-
Q 011188 338 MDTKKGCDQITRQLRMD----GW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF- 408 (491)
Q Consensus 338 ~~~~~~~~~l~~~L~~~----~~----~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~- 408 (491)
....++.+.+++.|.+. .. -+..+||.++.+++..+++.-..|..+|+++|++++..|.||++..||+-+.
T Consensus 265 LtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~v 344 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFV 344 (674)
T ss_pred eCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCce
Confidence 99999999999999764 11 2468999999999999999888899999999999999999999999996543
Q ss_pred -----------------CCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 409 -----------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 409 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
|.|.++..||.|||||. ..|+||.++++.+.
T Consensus 345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred EEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 55899999999999999 59999999998654
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=5.4e-26 Score=224.23 Aligned_cols=318 Identities=23% Similarity=0.311 Sum_probs=223.6
Q ss_pred CCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.+++||.+.++|+.+ |-+.|+..++|.|||+. .++++.++.... ...|| .||+||...|.+ |.+++.+|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHHH-HHHHHHHhC
Confidence 689999999999763 56799999999999987 445666665521 11244 689999988765 999999998
Q ss_pred CCCCceEEEEECCccChhhH-HHh--hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 184 ASSKIKSTCIYGGVPKGPQV-RDL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~-~~~--~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
+. +.+++++|+....... +.+ ....+|+|+|++..+.-- ..+.--.+.|+||||||++.+. ...+.++++.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 76 7788888876433222 221 235899999999976541 1112235789999999999876 4555677777
Q ss_pred cCCCCceEEeccCCcH-HHHH------------------HHHHH----------------------------------cc
Q 011188 261 IRPDRQTLYWSATWPK-EVEH------------------LARQY----------------------------------LY 287 (491)
Q Consensus 261 ~~~~~~~i~~SAT~~~-~~~~------------------~~~~~----------------------------------~~ 287 (491)
+.... .+++|+|+-. .+.+ +-.++ +.
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 75443 5777888311 0000 00000 00
Q ss_pred CCcEEE--ecC----------------------CC-------------------------cccccceeeeeeccChhhHH
Q 011188 288 NPYKVI--IGS----------------------PD-------------------------LKANHAIRQHVDIVSESQKY 318 (491)
Q Consensus 288 ~~~~~~--~~~----------------------~~-------------------------~~~~~~~~~~~~~~~~~~k~ 318 (491)
....+. +.. .. ..........-..+....|.
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 000000 000 00 00000000001122345677
Q ss_pred HHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCC---CcEEEEecccccc
Q 011188 319 NKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARG 394 (491)
Q Consensus 319 ~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~~G 394 (491)
..|..+|..+. .+.+||||.+.....+.|..+..-.++....+.|.++.++|...++.|+... .-+|++|.+.+-|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 77888887765 4669999999999999999999999999999999999999999999999754 3378999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEE--eCcc
Q 011188 395 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF--FTAA 438 (491)
Q Consensus 395 idi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~--~~~~ 438 (491)
||+..+++||.||..|+|..-.|..-||+|.|++..+.+| ++.+
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999998765554 5544
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.7e-26 Score=202.67 Aligned_cols=165 Identities=33% Similarity=0.548 Sum_probs=141.6
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 011188 110 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 189 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 189 (491)
||+|.++++.+.+++++++.+|||+|||++++++++..+.+. +..++++++|+++|++|+.+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888762 23489999999999999999999998887889
Q ss_pred EEEEECCccCh-hhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC--CCCc
Q 011188 190 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQ 266 (491)
Q Consensus 190 v~~~~~g~~~~-~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~--~~~~ 266 (491)
+..++++.... .....+..+++|+|+||++|.+.+.....++.++++||+||+|.+....+...+..++..+. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999887754 33344455799999999999999988655777899999999999999888888888888873 3589
Q ss_pred eEEeccCCcHHHHH
Q 011188 267 TLYWSATWPKEVEH 280 (491)
Q Consensus 267 ~i~~SAT~~~~~~~ 280 (491)
++++|||+++.++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999866654
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.5e-26 Score=219.36 Aligned_cols=308 Identities=21% Similarity=0.287 Sum_probs=223.7
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH---
Q 011188 105 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK--- 181 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~--- 181 (491)
.....+++-.+.+.++..++-+||.+.||||||+. +| ++|.+..... .++++-+..|+|--|..++..+.+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk--~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTK--GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhccccc--CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 34467788888999999999999999999999985 44 5555533222 355578888999777776665553
Q ss_pred --hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCCcHHHHHHHH
Q 011188 182 --FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKIL 258 (491)
Q Consensus 182 --~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~~~~~~~~i~ 258 (491)
+++..++++- .........-|-++|.+.|++-+.. ..+|.++++|||||||. .+..+..-.+.+=+
T Consensus 336 vkLG~eVGYsIR----------FEdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 336 VKLGHEVGYSIR----------FEDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDI 404 (902)
T ss_pred cccccccceEEE----------eccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHH
Confidence 4444443331 1222234567889999999887765 45588999999999994 33222222233334
Q ss_pred hhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc---cCCeEE
Q 011188 259 SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRIL 335 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~l 335 (491)
..++++.+++++|||+. .+++...+...|+...-+.. ..+...+...++.+.+...+.-+.++. +.+-+|
T Consensus 405 ar~RpdLKllIsSAT~D--AekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMD--AEKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred HhhCCcceEEeeccccC--HHHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 55678999999999985 45666665555665543332 234445555666666666665554432 345799
Q ss_pred EEeCCcccHHHHHHHHHhC---------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEc
Q 011188 336 IFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINY 406 (491)
Q Consensus 336 Vf~~~~~~~~~l~~~L~~~---------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~ 406 (491)
||....++.+...+.|... .+-+.++|+.++.+.+.++++-...|-.+|++||++++..|.|+++.+||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999999888777777532 2457889999999999999999999999999999999999999999999954
Q ss_pred CC------------------CCChhHHHHhhhhcccCCCcceEEEEeCc
Q 011188 407 DF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTA 437 (491)
Q Consensus 407 ~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 437 (491)
+. |.|.++..||.|||||.| .|+|+.+|+.
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 43 558899999999999996 9999999994
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=5.1e-25 Score=232.78 Aligned_cols=323 Identities=18% Similarity=0.254 Sum_probs=217.2
Q ss_pred CCcHHHHHHHHHhhcC---C-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~---~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
..++.|..++..+... . .+++.||||+|||.+++.+++..+... .....+++++.|++++++++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3588999999988753 3 688999999999999988887776652 1247889999999999999999999865
Q ss_pred CCCCceEEEEECCccChhhHHHh---------------hcCCcEEEeChHHHHHHHhcc-Ccc-c--cCccEEEEccccc
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDL---------------QKGVEIVIATPGRLIDMLESH-NTN-L--RRVTYLVLDEADR 244 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~---------------~~~~~Iiv~T~~~l~~~l~~~-~~~-l--~~~~~lIiDEah~ 244 (491)
....+.....++.... ...... ..-..++++||.......... ... + -..+.+||||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 5443322212222111 110000 001234555554443321111 111 1 1246899999998
Q ss_pred cccCCcHHHHHHHHhhc-CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcc--cccceeeeeeccChhhH--HH
Q 011188 245 MLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLK--ANHAIRQHVDIVSESQK--YN 319 (491)
Q Consensus 245 ~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k--~~ 319 (491)
+.+......+..++..+ ..+..+|++|||+|+...+.....+.....+........ ....+.+.. ....... ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 428 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEE 428 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHh
Confidence 87763234444444333 357889999999999999888887766555544322100 001111110 0011111 12
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh----CCCCcEEEEeccccccC
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGL 395 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gi 395 (491)
..........++.+++|.|||+..|..++..|+..+.++..+|+.+...+|.+.++.+. .+...|+|||++++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 23333445556789999999999999999999988778999999999999998888654 46778999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHhhhhcccCC--CcceEEEEeCccc
Q 011188 396 DVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGTAYTFFTAAN 439 (491)
Q Consensus 396 di~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 439 (491)
|+ +.+++|-==.| +...+||+||++|.| ..|..+++.....
T Consensus 509 Di-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 509 DI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred cc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 99 68988855555 889999999999999 5677777766543
No 108
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=7.7e-24 Score=210.11 Aligned_cols=333 Identities=21% Similarity=0.248 Sum_probs=224.5
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|.+||++.+.++. ++...|+-.++|.|||.. ++..|..+..... --..+|||||. .+..||..++..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k----~~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK----LTKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc----ccCceEEEccH-HHHHHHHHHHHHhC
Confidence 67899999999986 456799999999999966 3334444444211 12559999997 78899999999997
Q ss_pred CCCCceEEEEECCccChh-------------hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc
Q 011188 184 ASSKIKSTCIYGGVPKGP-------------QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~-------------~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
+. ++|..+++..+... ..+.......|+|+|++.+.- . ...+.-..++|+|+||.|++-+..
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~-~-~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI-Q-GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc-c-CcccccccccEEEecCcccccCCc-
Confidence 66 67777777654211 111122245799999987732 1 223333468899999999998764
Q ss_pred HHHHHHHHhhcCCCCceEEeccCCcH-HHHHHHH---H------------------------------------------
Q 011188 251 EPQIKKILSQIRPDRQTLYWSATWPK-EVEHLAR---Q------------------------------------------ 284 (491)
Q Consensus 251 ~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~---~------------------------------------------ 284 (491)
..+...+..++ ..+.|++|+|+-. .+.++-. .
T Consensus 354 -s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 33444444453 4556778888311 1111000 0
Q ss_pred --------------------HccCCcEEE-e-----------------------------------------cCCCcccc
Q 011188 285 --------------------YLYNPYKVI-I-----------------------------------------GSPDLKAN 302 (491)
Q Consensus 285 --------------------~~~~~~~~~-~-----------------------------------------~~~~~~~~ 302 (491)
.+.....++ + ..+.+...
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000000000 0 00000000
Q ss_pred c--ceeee--e-eccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHH-hCCCceEEEcCCCCHHHHHHHHH
Q 011188 303 H--AIRQH--V-DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLS 375 (491)
Q Consensus 303 ~--~~~~~--~-~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~i~~~~~~~~r~~~~~ 375 (491)
. ...+. + .......|...+..++.... .+.++|+|..++...+.|...|. ..++.+..+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 00000 0 12233568888888888764 45699999999999999999998 57999999999999999999999
Q ss_pred HHhCCCCc--EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceE--EEEeCcc---cHHHHHHHHH
Q 011188 376 EFKAGKSP--IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA--YTFFTAA---NARFAKELIT 448 (491)
Q Consensus 376 ~f~~g~~~--vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~---~~~~~~~l~~ 448 (491)
+|+++..- +|++|.+.+-|+|+..++-||+||+.|+|++-.|..-|+.|.|++-.+ |.+++.. ++-+-+.+.+
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 99977543 678899999999999999999999999999999999999999998554 4456554 4445555554
Q ss_pred HHHHh
Q 011188 449 ILEEA 453 (491)
Q Consensus 449 ~l~~~ 453 (491)
.....
T Consensus 672 q~Ltn 676 (923)
T KOG0387|consen 672 QFLTN 676 (923)
T ss_pred HHHHH
Confidence 44333
No 109
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=209.85 Aligned_cols=307 Identities=20% Similarity=0.266 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASS 186 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~ 186 (491)
.....+.+.+..+..++-+|++++||||||+. +.++|++..+. +...+-+..|.|.-|..++..+.. .+..+
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34455666666677788899999999999986 44566654332 234667778999887777776663 32222
Q ss_pred CceE--EEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCCcHHHHHHHHhhcCC
Q 011188 187 KIKS--TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQIRP 263 (491)
Q Consensus 187 ~~~v--~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~~~~~~~~i~~~~~~ 263 (491)
+-.| .+-+.+. -....-|-++|.+.|++..... ..|.++++||+||||. -++.+..--+.+.+..-+.
T Consensus 429 G~~VGYsIRFEdv--------T~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDV--------TSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccccceEEEeeec--------CCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 2222 1111111 1223568899999998865543 3477999999999995 2332211122222223346
Q ss_pred CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc---cCCeEEEEeCC
Q 011188 264 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDT 340 (491)
Q Consensus 264 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lVf~~~ 340 (491)
+.++|..|||+. .+++...|...|...+-+... .+.-.+...+.++..+....-.-.+. ..+-+|||...
T Consensus 500 dlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 500 DLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred cceEEEeecccc--HHHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 889999999984 567777777677665544322 23333333444444444333222221 23569999999
Q ss_pred cccHHHHHHHHHh----------CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC--
Q 011188 341 KKGCDQITRQLRM----------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-- 408 (491)
Q Consensus 341 ~~~~~~l~~~L~~----------~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~-- 408 (491)
.+..+..+..++. .++.+..+++.++.+-+.++++.-..|..+++|||++++..+.+|++.+||..++
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 8877666655532 1567899999999999999999888999999999999999999999999996653
Q ss_pred ----------------CCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 409 ----------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 409 ----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
|.|.+...||.|||||.| +|.||.+|++.
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 668889999999999995 99999999974
No 110
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=8.1e-24 Score=218.77 Aligned_cols=316 Identities=21% Similarity=0.252 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASS 186 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~ 186 (491)
..+.++.+.+.++.+++.+++++.||+|||+..---++....... ....+++-.|+|--|..+++++.. .+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 457788889999999999999999999999874444555544422 466688889998777777776653 23223
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccc-cccCCcHHHHHHHHhhcCCCC
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~-~~~~~~~~~~~~i~~~~~~~~ 265 (491)
+-.|.--.... ........+.+||.+.|++.+.. ...+..+++||+||+|. -.+.+|.-.+.+.+...+++.
T Consensus 248 g~~VGYqvrl~------~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLE------SKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeee------cccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 32221111111 11123368999999999999988 55688999999999994 445566666666666667999
Q ss_pred ceEEeccCCcHHHHHHHHHHccCCcEEEecCCCccccc---------------ceeee------------eeccChhhHH
Q 011188 266 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANH---------------AIRQH------------VDIVSESQKY 318 (491)
Q Consensus 266 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~------------~~~~~~~~k~ 318 (491)
++|+||||+. .+.+...|...|+..+-+... .... ...+. +.....+-..
T Consensus 321 kvILMSAT~d--ae~fs~YF~~~pvi~i~grtf-pV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 321 KVILMSATLD--AELFSDYFGGCPVITIPGRTF-PVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred eEEEeeeecc--hHHHHHHhCCCceEeecCCCc-chHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 9999999986 344544444444433322111 0000 00000 1111122334
Q ss_pred HHHHHHHHhhc---cCCeEEEEeCCcccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe
Q 011188 319 NKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 388 (491)
Q Consensus 319 ~~l~~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT 388 (491)
..+.+++..+. ..+.+|||.+...++..+.+.|... .+-+..+|+.++..+++.++.....|..+|+++|
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 44555555443 3458999999999999999999642 2557789999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCC------------------CChhHHHHhhhhcccCCCcceEEEEeCccc
Q 011188 389 DVAARGLDVKDVKYVINYDFP------------------GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 439 (491)
Q Consensus 389 ~~~~~Gidi~~~~~VI~~~~p------------------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 439 (491)
++++..|.|+++-+||+.+.- -|.....||.|||||. +.|.||.+++...
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999965431 2677889999999999 8999999999753
No 111
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=7.9e-25 Score=225.91 Aligned_cols=381 Identities=20% Similarity=0.270 Sum_probs=251.6
Q ss_pred CCCCCCCcccccccccCccccCCCHHHHHHHHhhcCceEe---cCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 011188 38 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVE---GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQA 114 (491)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~ 114 (491)
..|..| ++....+.....+...-..++++|...+.-... +...-++-..|..+...+..+.. .+++.||.
T Consensus 304 vKW~~L-pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQL 376 (1373)
T KOG0384|consen 304 VKWRGL-PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQL 376 (1373)
T ss_pred EEecCC-CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chhhhhhc
Confidence 556666 677777777777777777778777665432211 11222223445555444443322 58999999
Q ss_pred HHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 011188 115 QGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 190 (491)
Q Consensus 115 ~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v 190 (491)
+.+++++ .++++|+...+|.|||+. .+..|.++.... .-.|| .|||+|...+. .|.+++..+. .+++
T Consensus 377 eGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~---~~~gp-flvvvplst~~-~W~~ef~~w~---~mn~ 447 (1373)
T KOG0384|consen 377 EGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL---QIHGP-FLVVVPLSTIT-AWEREFETWT---DMNV 447 (1373)
T ss_pred ccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh---hccCC-eEEEeehhhhH-HHHHHHHHHh---hhce
Confidence 9999876 578999999999999966 344555554421 11244 68999987665 4788888776 5788
Q ss_pred EEEECCccChhhHHHhh----c-----CCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 191 TCIYGGVPKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 191 ~~~~~g~~~~~~~~~~~----~-----~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
++++|.....+.++... . ..+++++|++.++.-.. .+.--.+.++++||||++.+. ...+...+..+
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f 523 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKLYESLNQF 523 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHHHHHHHHHh
Confidence 88888877666554431 1 37899999988754221 111124678999999999865 33444445555
Q ss_pred CCCCceEEeccCC-cHHHHHHHHHH-ccCCcEEEec--------------------------------CCCcccccceee
Q 011188 262 RPDRQTLYWSATW-PKEVEHLARQY-LYNPYKVIIG--------------------------------SPDLKANHAIRQ 307 (491)
Q Consensus 262 ~~~~~~i~~SAT~-~~~~~~~~~~~-~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 307 (491)
.-+ ..+++|.|+ -+.+.++...+ +..|..+... ..+...+....+
T Consensus 524 ~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~ 602 (1373)
T KOG0384|consen 524 KMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEET 602 (1373)
T ss_pred ccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcce
Confidence 433 357778884 22333322111 0111110000 000000000000
Q ss_pred eee------------------------------------------------------------------------ccChh
Q 011188 308 HVD------------------------------------------------------------------------IVSES 315 (491)
Q Consensus 308 ~~~------------------------------------------------------------------------~~~~~ 315 (491)
++. .+.+.
T Consensus 603 IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sS 682 (1373)
T KOG0384|consen 603 ILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSS 682 (1373)
T ss_pred EEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhc
Confidence 000 00111
Q ss_pred hHHHHHHHHHHhhcc-CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC---CCcEEEEeccc
Q 011188 316 QKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDVA 391 (491)
Q Consensus 316 ~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g---~~~vLvaT~~~ 391 (491)
.|+..|..+|..+.. +.+||||.+.....+.|+++|...+|+...|.|.+..+.|+.+++.|+.- ...+|+||.+.
T Consensus 683 GKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAG 762 (1373)
T KOG0384|consen 683 GKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAG 762 (1373)
T ss_pred CcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccC
Confidence 222233344444443 56999999999999999999999999999999999999999999999964 45589999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcce--EEEEeCccc
Q 011188 392 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT--AYTFFTAAN 439 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~~ 439 (491)
+-|||+..+++||+||..|+|..-+|..-||+|.||+-. +|.|++.+.
T Consensus 763 GLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 763 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999999999999999864 666777653
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=6.5e-24 Score=219.41 Aligned_cols=142 Identities=21% Similarity=0.375 Sum_probs=120.8
Q ss_pred cChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 312 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 312 ~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
.....|...+.+.+... ..+.++||||+|++.++.|++.|...++++..+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34567888999888764 45679999999999999999999999999999997 5889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHH----HHHHHHHHHhCC
Q 011188 391 AARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA----KELITILEEAGQ 455 (491)
Q Consensus 391 ~~~Gidi~---~~~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~----~~l~~~l~~~~~ 455 (491)
++||+||+ .|. +||.+..|.|...|.|++||+||.|.+|.++.|++..|.-+- ..+.+++...+.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 99999999 454 458999999999999999999999999999999998764321 245555555443
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.7e-23 Score=209.92 Aligned_cols=315 Identities=20% Similarity=0.246 Sum_probs=218.5
Q ss_pred CCCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
..+++-|..++..+.+. +..++.+.||||||.+|+-.+-..+.. |+.+|+|+|-.+|..|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 36788999999998765 569999999999999988866655555 889999999999999999999864
Q ss_pred cCCCCceEEEEECCccChhh---HHHh-hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-----CcHHH
Q 011188 183 GASSKIKSTCIYGGVPKGPQ---VRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-----GFEPQ 253 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~---~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-----~~~~~ 253 (491)
. +.++.+++++.+..+. |... .....|+|+|-..+ ...++++++||+||=|.-.-. .|...
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 3 2567777777665443 3333 35689999997655 345789999999999954321 12222
Q ss_pred HHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHH-----HHHHHHHHh-
Q 011188 254 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLED- 327 (491)
Q Consensus 254 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~- 327 (491)
-..++..-..+.++|+-|||+. ++......-.....+.+......+.....+.++......+. ..+++.+++
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 2233444446788999999975 45554443332333333322212222223333333322222 445555544
Q ss_pred hccCCeEEEEeCCcccH------------------------------------------------------------HHH
Q 011188 328 IMDGSRILIFMDTKKGC------------------------------------------------------------DQI 347 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~------------------------------------------------------------~~l 347 (491)
+..+.++|+|+|.+..+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 45577999999887655 666
Q ss_pred HHHHHhC--CCceEEEcCCCCHH--HHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCC------------C
Q 011188 348 TRQLRMD--GWPALSIHGDKSQA--ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------S 411 (491)
Q Consensus 348 ~~~L~~~--~~~~~~i~~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~------------s 411 (491)
++.|+.. +.++..+.++.... .-...+..|.+|+.+|||.|++++.|.|+|+++.|...|.+. .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 6666654 45677777776643 356789999999999999999999999999999887665432 3
Q ss_pred hhHHHHhhhhcccCCCcceEEEEeCcccHH
Q 011188 412 LEDYVHRIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 412 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
...+.|-.||+||.+.+|.+++-....+..
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 456789999999999999988876665533
No 114
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.4e-24 Score=200.83 Aligned_cols=310 Identities=19% Similarity=0.204 Sum_probs=213.1
Q ss_pred CCCCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 106 FFEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
-..++|||++++..+.-+ ++.||+.|+|+|||++-+-++.. -.+.|||||.+..-+.||..++..|
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-----------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-----------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----------ecccEEEEecCccCHHHHHHHHHhh
Confidence 357999999999998854 56899999999999875543321 1567999999999999999999998
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc--------CccccCccEEEEccccccccCCcHHHH
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQI 254 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--------~~~l~~~~~lIiDEah~~~~~~~~~~~ 254 (491)
.....-.++..+.+... ....++.|+|+|+..+..--.+. .+.-..++++++||+|.+...-|+..+
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 76655556655554322 23457899999986653211110 112346789999999998876666555
Q ss_pred HHHHhhcCCCCceEEeccCCcHHHHHHHH-HHccCCcEEEe--------------cCCCccc------------ccceee
Q 011188 255 KKILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVII--------------GSPDLKA------------NHAIRQ 307 (491)
Q Consensus 255 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~------------~~~~~~ 307 (491)
.-+...+ -+++|||+-.+..++.. +++..|..+.. .-.+... ......
T Consensus 444 siv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 5554444 38999998554333322 12222222111 1001000 000111
Q ss_pred eeeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC-CCCcEE
Q 011188 308 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA-GKSPIM 385 (491)
Q Consensus 308 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-g~~~vL 385 (491)
.+..+-+..|+..+.-+++.+. .+.++|||..+.-....++-.|.+. .|+|..++.+|..+++.|+. ..++-+
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceE
Confidence 2223345667777776776654 3569999999888888877777654 78999999999999999995 467889
Q ss_pred EEeccccccCCCCCCCEEEEcCCC-CChhHHHHhhhhcccCCC------cceEEEEeCcccHH
Q 011188 386 TATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGA------KGTAYTFFTAANAR 441 (491)
Q Consensus 386 vaT~~~~~Gidi~~~~~VI~~~~p-~s~~~~~Qr~GR~gR~g~------~g~~~~~~~~~~~~ 441 (491)
+-+.+....+|+|.++++|+...- .|..+-.||+||..|+.+ +...|.+++.+..+
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 999999999999999999987654 478899999999999743 23455566655433
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=4.1e-22 Score=206.16 Aligned_cols=134 Identities=20% Similarity=0.329 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 315 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 315 ~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
..+...+.+.+... ..+.++||||++++.++.+++.|.+.++++..+|+++++.+|.++++.|+.|+++|||||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44566666666654 45679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcC-----CCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHH
Q 011188 394 GLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 394 Gidi~~~~~VI~~~-----~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 449 (491)
|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+..+...+.+.
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999998 788999999999999998 68999999998776655555554
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.8e-22 Score=204.42 Aligned_cols=288 Identities=25% Similarity=0.366 Sum_probs=196.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 011188 98 MQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 177 (491)
Q Consensus 98 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 177 (491)
-+.+.+...+.|+..|.--...+..|+++-+.||||.|||+--++ +-.++.. .+.++++++||+.|+.|+.+
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~-~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLL-MSLYLAK-------KGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHH-HHHHHHh-------cCCeEEEEecCHHHHHHHHH
Confidence 344455444599999999999999999999999999999964333 3333322 37899999999999999999
Q ss_pred HHHHhcCCCC-ceEEEEE-CCccCh---hhHHHhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC--
Q 011188 178 ESTKFGASSK-IKSTCIY-GGVPKG---PQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-- 249 (491)
Q Consensus 178 ~~~~~~~~~~-~~v~~~~-~g~~~~---~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-- 249 (491)
.+.++....+ ..+..+| +..+.. .....+.+ +.||+|+|.+-|...+..-. --+|+++++|++|.++..+
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhcccc
Confidence 9999876555 4444433 332222 22333443 58999999877765554311 1378999999999765322
Q ss_pred ---------cHHH-----------------------HHHHHhh--------cCCCCceEEeccCCcHH--HHHHHHHHcc
Q 011188 250 ---------FEPQ-----------------------IKKILSQ--------IRPDRQTLYWSATWPKE--VEHLARQYLY 287 (491)
Q Consensus 250 ---------~~~~-----------------------~~~i~~~--------~~~~~~~i~~SAT~~~~--~~~~~~~~~~ 287 (491)
|... +++++.. -.+..+++..|||..+. -..+.+.++.
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 2111 1111111 01346789999997432 2234444432
Q ss_pred CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCC---cccHHHHHHHHHhCCCceEEEcCC
Q 011188 288 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIHGD 364 (491)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~---~~~~~~l~~~L~~~~~~~~~i~~~ 364 (491)
- .++... ....++...+ ....-...+.++++.+.. -.|||++. ++.+++++++|+..|+++..+|+.
T Consensus 302 F----evG~~~-~~LRNIvD~y---~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 302 F----EVGSGG-EGLRNIVDIY---VESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred C----ccCccc-hhhhheeeee---ccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 1 112211 1112222222 222556777788888755 48999999 999999999999999999999984
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEEe----ccccccCCCCC-CCEEEEcCCCC
Q 011188 365 KSQAERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG 410 (491)
Q Consensus 365 ~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gidi~~-~~~VI~~~~p~ 410 (491)
..+.++.|..|++++||.. .++-+|||+|. ++++|+++.|.
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2668999999999999876 57899999996 88999999883
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.7e-22 Score=191.49 Aligned_cols=169 Identities=21% Similarity=0.284 Sum_probs=132.4
Q ss_pred CCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHh-hccCCeEEEEeCCcc
Q 011188 264 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKK 342 (491)
Q Consensus 264 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~ 342 (491)
..|+|++|||+.+...+.. ...-+..++....+ +...+.+-+.......|+.-++. ...+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 4699999999866433222 12233333333332 22223333444455566655554 456779999999999
Q ss_pred cHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCC-----CChhHHHH
Q 011188 343 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP-----GSLEDYVH 417 (491)
Q Consensus 343 ~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p-----~s~~~~~Q 417 (491)
.|+.|.++|.+.|+++..+|++...-+|.+++.+++.|.++|||..+.+-+|+|+|.|..|.++|.. .|..+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 48899999
Q ss_pred hhhhcccCCCcceEEEEeCcccHH
Q 011188 418 RIGRTGRAGAKGTAYTFFTAANAR 441 (491)
Q Consensus 418 r~GR~gR~g~~g~~~~~~~~~~~~ 441 (491)
-+|||.|. -+|.++++.+.-...
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~s 560 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDS 560 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHH
Confidence 99999998 689999888764433
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.4e-22 Score=200.49 Aligned_cols=315 Identities=20% Similarity=0.202 Sum_probs=223.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|.-+.-.+++| -|+.+.||.|||+++.+|++...+. |..|.|++|+..||.|-++++..+...++
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 7888888888877765 5789999999999999999888776 77899999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHH-HHHhcc------CccccCccEEEEccccccccC------------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDM------------ 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lIiDEah~~~~~------------ 248 (491)
+++.++.++.+... +.....|||+++|...|- ++|... ......+.+.||||+|.++-.
T Consensus 148 Lsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEE--RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHH--HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 99999988765443 333346899999987642 222221 223466889999999975410
Q ss_pred ---CcHHHHHHHHhhcCCC-------------------------------------------------------------
Q 011188 249 ---GFEPQIKKILSQIRPD------------------------------------------------------------- 264 (491)
Q Consensus 249 ---~~~~~~~~i~~~~~~~------------------------------------------------------------- 264 (491)
.....+..+...+.+.
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111111122211110
Q ss_pred ---------------------------------------------------------CceEEeccCCcHHHHHHHHHHcc
Q 011188 265 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 287 (491)
Q Consensus 265 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 287 (491)
..+.+||+|......++.+.|..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 14456666665555555554443
Q ss_pred CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 288 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.+.+ .... ...........+.....|...+++-+.+. ..+.||||.|.+.+..+.++..|.+.+++...+++.-.
T Consensus 386 ~Vv~I--Ptnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSVI--PPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEEC--CCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 32211 1111 11111112223345677888888777654 56779999999999999999999999999999998755
Q ss_pred HHHHHHHHHHHhCCC-CcEEEEeccccccCCCCC---------------CCEEEEcCCCCChhHHHHhhhhcccCCCcce
Q 011188 367 QAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD---------------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 430 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~---------------~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 430 (491)
..+-..+-+ .|+ -.|.|||++++||.||.- =-+||-...+.|..--.|-.||+||.|.+|.
T Consensus 463 ~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 544333333 343 359999999999999862 2279999999999999999999999999999
Q ss_pred EEEEeCcccH
Q 011188 431 AYTFFTAANA 440 (491)
Q Consensus 431 ~~~~~~~~~~ 440 (491)
+..|++-+|.
T Consensus 540 s~f~lSleDd 549 (764)
T PRK12326 540 SVFFVSLEDD 549 (764)
T ss_pred eeEEEEcchh
Confidence 9999887654
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=4.1e-22 Score=208.64 Aligned_cols=301 Identities=16% Similarity=0.151 Sum_probs=179.9
Q ss_pred CCcHHHHHHHHHhh----c------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMAL----K------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 177 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 177 (491)
-++++|..|+..+. . .+..+++++||||||++++..+ ..+.. ....+++|||+|+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~-----~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALE-----LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHh-----hcCCCeEEEEECcHHHHHHHHH
Confidence 37899999998754 2 2469999999999998866644 33332 1236789999999999999999
Q ss_pred HHHHhcCCCCceEEEEECCccChhhHHHhhc-CCcEEEeChHHHHHHHhcc--CccccCc-cEEEEccccccccCCcHHH
Q 011188 178 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESH--NTNLRRV-TYLVLDEADRMLDMGFEPQ 253 (491)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~--~~~l~~~-~~lIiDEah~~~~~~~~~~ 253 (491)
.+..++.... ....+.......+.. ...|+|+|.++|...+... ....... .+||+||||+.....
T Consensus 312 ~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~---- 381 (667)
T TIGR00348 312 EFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE---- 381 (667)
T ss_pred HHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----
Confidence 9999864211 011111222222222 3689999999997644321 1111111 289999999976433
Q ss_pred HHHHHhhcCCCCceEEeccCCcHHHHH-HHHHHc---cCCcEEE-----------------ecCCCccc-cccee----e
Q 011188 254 IKKILSQIRPDRQTLYWSATWPKEVEH-LARQYL---YNPYKVI-----------------IGSPDLKA-NHAIR----Q 307 (491)
Q Consensus 254 ~~~i~~~~~~~~~~i~~SAT~~~~~~~-~~~~~~---~~~~~~~-----------------~~~~~~~~-~~~~~----~ 307 (491)
+...+...-++...++||||+-..... -...+. .+++... ........ ...+. .
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 334443223467899999998432111 001111 1111110 00000000 00000 0
Q ss_pred eeec-----------------------cChhhHHHHHHHHHHhh----cc--CCeEEEEeCCcccHHHHHHHHHhC----
Q 011188 308 HVDI-----------------------VSESQKYNKLVKLLEDI----MD--GSRILIFMDTKKGCDQITRQLRMD---- 354 (491)
Q Consensus 308 ~~~~-----------------------~~~~~k~~~l~~~l~~~----~~--~~~~lVf~~~~~~~~~l~~~L~~~---- 354 (491)
.... ...+.....+...+.++ .. +.+++|||.++.+|..+++.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000 00011111222222111 11 368999999999999999988654
Q ss_pred -CCceEEEcCCCCHH---------------------HHHHHHHHHhC-CCCcEEEEeccccccCCCCCCCEEEEcCCCCC
Q 011188 355 -GWPALSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFPGS 411 (491)
Q Consensus 355 -~~~~~~i~~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s 411 (491)
+.....+++..+.+ ....++++|++ +..+|||+++++.+|+|.|.+++++...+..+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 23445555543322 22468888976 68899999999999999999999987776665
Q ss_pred hhHHHHhhhhcccC
Q 011188 412 LEDYVHRIGRTGRA 425 (491)
Q Consensus 412 ~~~~~Qr~GR~gR~ 425 (491)
..++|++||+.|.
T Consensus 622 -h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 -HGLLQAIARTNRI 634 (667)
T ss_pred -cHHHHHHHHhccc
Confidence 4689999999994
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=1.3e-21 Score=211.31 Aligned_cols=346 Identities=19% Similarity=0.223 Sum_probs=215.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 94 PDYVMQEISKAGFFEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
++.+.+.+...|| ++||.|.+.+. .+..++++++.||||+|||++|++|++.++.. +.+++|.+||+
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCcH
Confidence 3466667767777 58999998766 45567889999999999999999999887652 45799999999
Q ss_pred HHHHHHHH-HHHHhcCCC--CceEEEEECCccCh---------------h------------------------------
Q 011188 170 ELAVQIQQ-ESTKFGASS--KIKSTCIYGGVPKG---------------P------------------------------ 201 (491)
Q Consensus 170 ~L~~q~~~-~~~~~~~~~--~~~v~~~~~g~~~~---------------~------------------------------ 201 (491)
+|+.|+.. ++..+.+.. .+++..+.|....- .
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 455443332 26666665543210 0
Q ss_pred --hH------------------------HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC------
Q 011188 202 --QV------------------------RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG------ 249 (491)
Q Consensus 202 --~~------------------------~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~------ 249 (491)
.+ +.....++|+|+++..|+..+......+....++||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 00 0111235899999998887765443335667899999999865310
Q ss_pred -c-----HHH----------------------------------------------------------------HHHHHh
Q 011188 250 -F-----EPQ----------------------------------------------------------------IKKILS 259 (491)
Q Consensus 250 -~-----~~~----------------------------------------------------------------~~~i~~ 259 (491)
+ ... +...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 000 000000
Q ss_pred h---------------------c---------------------------CCCCceEEeccCCcH--HHHHHHHHHccCC
Q 011188 260 Q---------------------I---------------------------RPDRQTLYWSATWPK--EVEHLARQYLYNP 289 (491)
Q Consensus 260 ~---------------------~---------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~~ 289 (491)
. . +....+|++|||+.. ....+.+.+..+.
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 012467899999852 2333333333322
Q ss_pred cE-EEe-cCCCcccccceeeee--ec-----cChhhHHHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhC----
Q 011188 290 YK-VII-GSPDLKANHAIRQHV--DI-----VSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD---- 354 (491)
Q Consensus 290 ~~-~~~-~~~~~~~~~~~~~~~--~~-----~~~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~---- 354 (491)
.. ..+ .++. ....+..-.+ .. .+...-...+.+.+.++. .++++|||+++.+.++.++..|...
T Consensus 623 ~~~~~~~~spf-~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 623 VHFNTIEPTPL-NYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred cccceecCCCC-CHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 21 111 1111 1001111010 01 111223334555544432 3458999999999999999999752
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCC--EEEEcCCCC----------------------
Q 011188 355 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK--YVINYDFPG---------------------- 410 (491)
Q Consensus 355 ~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~--~VI~~~~p~---------------------- 410 (491)
+++ .+..+.. ..|..+++.|++++..||++|+.+++|||+|+.. +||...+|.
T Consensus 702 ~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred Cce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 333 3333333 4788899999999999999999999999999754 677777664
Q ss_pred --------ChhHHHHhhhhcccCCCcceEEEEeCcc--cHHHHHHHHHHHHH
Q 011188 411 --------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 452 (491)
Q Consensus 411 --------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 452 (491)
....+.|.+||.-|..++.-++++++.. ...+-+.+.+.+..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 1244669999999997665556666654 55666777666643
No 121
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.9e-23 Score=203.39 Aligned_cols=300 Identities=22% Similarity=0.326 Sum_probs=191.9
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCC--CCCCCCEEEEEcccHHHHHHHHHHH----HHhcCCCC
Q 011188 114 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIVLVLAPTRELAVQIQQES----TKFGASSK 187 (491)
Q Consensus 114 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~~~vlil~Pt~~L~~q~~~~~----~~~~~~~~ 187 (491)
++.+.+|..+.-+|||+.||||||+. +| ++|.+-.+. ....+..+-|.-|+|--|..+++.. ..+++.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e-- 335 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE-- 335 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccc--
Confidence 44555666677799999999999985 44 334332221 1222446778889985555554443 333333
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI------ 261 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~------ 261 (491)
+...+-+.++ ......|.++|.+.|++.++++ +.|.+++.||+||||.-.- +...+.-+++++
T Consensus 336 VsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 336 VSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred eeEEEEeccc--------cCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHH
Confidence 3334444443 2234689999999999998874 4588999999999995221 122222222221
Q ss_pred -C------CCCceEEeccCCcHHHHHHH--HHHcc-CCcEEEecCCCcccccceeeeeeccChh----hHHHHHHHHHHh
Q 011188 262 -R------PDRQTLYWSATWPKEVEHLA--RQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSES----QKYNKLVKLLED 327 (491)
Q Consensus 262 -~------~~~~~i~~SAT~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~~l~~ 327 (491)
. +..++|+||||+. +.++. +.++. .|..+.+..... .+.-++..-... +-+...+.+-+.
T Consensus 405 ~~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf----PVsIHF~krT~~DYi~eAfrKtc~IH~k 478 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF----PVSIHFNKRTPDDYIAEAFRKTCKIHKK 478 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC----ceEEEeccCCCchHHHHHHHHHHHHhhc
Confidence 1 2457899999984 23332 22232 333444443322 222222222222 223344444444
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhCC---C------------------------------------------------
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMDG---W------------------------------------------------ 356 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~------------------------------------------------ 356 (491)
+.+ +.+|||+....+++.|++.|++.. +
T Consensus 479 LP~-G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~ 557 (1172)
T KOG0926|consen 479 LPP-GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELV 557 (1172)
T ss_pred CCC-CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhh
Confidence 444 569999999999999999997641 0
Q ss_pred ------------------------------------------------ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe
Q 011188 357 ------------------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 388 (491)
Q Consensus 357 ------------------------------------------------~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT 388 (491)
-|..+++-++...+..+++.-..|..-++|||
T Consensus 558 ~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaT 637 (1172)
T KOG0926|consen 558 DSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVAT 637 (1172)
T ss_pred cccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEec
Confidence 01134566667777777777777887899999
Q ss_pred ccccccCCCCCCCEEEEcCCCC------------------ChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 389 DVAARGLDVKDVKYVINYDFPG------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 389 ~~~~~Gidi~~~~~VI~~~~p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
+++++.+.||++.+||+.+.-. |..+--||+|||||.| .|+||.+|+..
T Consensus 638 NVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 638 NVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999999999766422 5677789999999996 89999999864
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=8.6e-23 Score=205.13 Aligned_cols=296 Identities=20% Similarity=0.214 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHHhh----cCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 107 FEPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~----~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
..+|+||..||..+. .|+ .+|+++.||+|||.+++. ++..|.+. +..++||+|+.+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 368999999997654 444 499999999999987444 66666653 3478899999999999999999998
Q ss_pred hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-----CccccCccEEEEccccccccCCcHHHHHH
Q 011188 182 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKK 256 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lIiDEah~~~~~~~~~~~~~ 256 (491)
+.+.... .....+... ...++|.++|++++....... .+....|++||+||||+-. ......
T Consensus 238 ~~P~~~~--~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGTK--MNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCccc--eeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 8765331 111111111 114689999999998877654 3344568999999999844 555667
Q ss_pred HHhhcCCCCceEEeccCCcHHHHHHHHHHc-cCCcEEE------------------ec----CCCc--ccc-cc------
Q 011188 257 ILSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVI------------------IG----SPDL--KAN-HA------ 304 (491)
Q Consensus 257 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~~----~~~~--~~~-~~------ 304 (491)
|+.++.... +++|||+.+.+..-.-.++ ..|.... +. .... ... ..
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 887775433 4459998664433322333 3332221 00 0000 000 00
Q ss_pred -e---eeeeeccC------hhhHHHHHHHHHHhhcc-------CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEc
Q 011188 305 -I---RQHVDIVS------ESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIH 362 (491)
Q Consensus 305 -~---~~~~~~~~------~~~k~~~l~~~l~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~i~ 362 (491)
+ .+.+...+ .......+...+.+... -+|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 00000000 11223334444443322 248999999999999999999765 22356677
Q ss_pred CCCCHHHHHHHHHHHhC-CCC-cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC
Q 011188 363 GDKSQAERDWVLSEFKA-GKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 363 ~~~~~~~r~~~~~~f~~-g~~-~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
++-.+. +..++.|.. .+. .|.|+.+++.+|||+|.|..++++..-.|...|.||+||.-|.
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 765543 344555554 333 4777779999999999999999999999999999999999993
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.90 E-value=1.2e-21 Score=199.54 Aligned_cols=322 Identities=22% Similarity=0.252 Sum_probs=209.6
Q ss_pred CCcHHHHHHHHHhhc---C-------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMALK---G-------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 177 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~---~-------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 177 (491)
.++|+|++++..+.. | ..+|+...+|+|||+..+. .+.-++++.+.+..--.+.|||+|. .|+..|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 689999999987653 2 2488899999999998444 5555554322211123678999997 79999999
Q ss_pred HHHHhcCCCCceEEEEECCccC-h---hhHHHh---hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc
Q 011188 178 ESTKFGASSKIKSTCIYGGVPK-G---PQVRDL---QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~g~~~-~---~~~~~~---~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
+|.++.....+....+++.... . ..+..+ .-...|++.+++.+.+.... .....++++|+||.|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-
Confidence 9999976556777777776653 0 001111 11246889999998766554 335578999999999987653
Q ss_pred HHHHHHHHhhcCCCCceEEeccCC-cHHHHHH------------------------------------------------
Q 011188 251 EPQIKKILSQIRPDRQTLYWSATW-PKEVEHL------------------------------------------------ 281 (491)
Q Consensus 251 ~~~~~~i~~~~~~~~~~i~~SAT~-~~~~~~~------------------------------------------------ 281 (491)
..+...+..+. ..+.|++|+|+ -+++.++
T Consensus 393 -s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 393 -SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred -hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 34445555553 45568889992 1111110
Q ss_pred ---HHHH------------ccCCcEEEe--cCCC-------------------------------------c--------
Q 011188 282 ---ARQY------------LYNPYKVII--GSPD-------------------------------------L-------- 299 (491)
Q Consensus 282 ---~~~~------------~~~~~~~~~--~~~~-------------------------------------~-------- 299 (491)
...+ +.....+++ .... +
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 0000 000000000 0000 0
Q ss_pred c----cc-------cceeeeeeccChhhHHHHHHHHHHhhcc--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 300 K----AN-------HAIRQHVDIVSESQKYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 300 ~----~~-------~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
. .. ..............++..|..++..... ..++.+..|.+...+.+....+-.|+.+..+||.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 0 00 0000000000113445555555533322 124555556667777777777777999999999999
Q ss_pred HHHHHHHHHHHhCCCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 367 QAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
..+|+.+++.|++.... +|.+|.+.+.||++-+++.||.||++|||+.-.|.+.|+.|.||+-.|++|-.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 99999999999975433 56678999999999999999999999999999999999999999988887644
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-21 Score=202.21 Aligned_cols=316 Identities=18% Similarity=0.195 Sum_probs=216.1
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
++||-.+.+-.+.-++.-|+.+.||+|||+++.+|++..... |..|.|++|+..||.|-++++..+...+++
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 444444445555556678999999999999999999877776 778999999999999999999999999999
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccccC-------------
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDM------------- 248 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~~~------------- 248 (491)
++.++.++.+...... ...++|+++|..-| .++|... ......+.++||||+|.++=.
T Consensus 153 ~v~~i~~~~~~~err~--~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 153 SVGIVTPFQPPEEKRA--AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred EEEEECCCCCHHHHHH--HhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 9999988765543333 33489999998876 3333322 112478899999999975510
Q ss_pred ---CcHHHHHHHHhhcCC--------------------C-----------------------------------------
Q 011188 249 ---GFEPQIKKILSQIRP--------------------D----------------------------------------- 264 (491)
Q Consensus 249 ---~~~~~~~~i~~~~~~--------------------~----------------------------------------- 264 (491)
.....+..++..+.. .
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 011111122111100 0
Q ss_pred --------------------------------------------------------------------------CceEEe
Q 011188 265 --------------------------------------------------------------------------RQTLYW 270 (491)
Q Consensus 265 --------------------------------------------------------------------------~~~i~~ 270 (491)
.++.+|
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 123344
Q ss_pred ccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHH
Q 011188 271 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITR 349 (491)
Q Consensus 271 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~ 349 (491)
|+|...+..++...|..+.+.+....+ ....-.....+.....|...+.+-+.+.. .+.||||-+.|.+..+.|++
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkP---~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~ 467 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVIPPNKP---LARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSN 467 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEECCCCCC---cccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHH
Confidence 444433333333333222221111111 00011112234456778888888777654 57799999999999999999
Q ss_pred HHHhCCCceEEEcCCCCHHHHHHHHHHHhCC-CCcEEEEeccccccCCCC------------------------------
Q 011188 350 QLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVK------------------------------ 398 (491)
Q Consensus 350 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gidi~------------------------------ 398 (491)
.|.+.+++..+++......+-..+-+ .| .-.|.|||++++||.||.
T Consensus 468 ~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (913)
T PRK13103 468 LLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKR 544 (913)
T ss_pred HHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhH
Confidence 99999999988888755444444333 44 345999999999999994
Q ss_pred -------CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 399 -------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 399 -------~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
+=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 545 ~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 545 HQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 122788899999999999999999999999999999987654
No 125
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=9.7e-22 Score=202.59 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=218.2
Q ss_pred CCcHHHHHHHHHhh--c--CCcEEEEcCCCChHHHHHHHHHHHHhhcC-CCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 108 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~--~--~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
++|.||++.++|+. . +-+.|+|..+|.|||+..+-.+....... .....-.....|||||+ .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 67999999999864 2 45799999999999988544333332222 11112223448999997 7999999999999
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 262 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~ 262 (491)
.+. +++....|+-..+...+.--++.+|+|++|+.+.+-+.. +.-.++.|+|+||.|-|.+. ...+.+.++.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 988 667777776655555565556679999999988643322 11235779999999987764 556666667775
Q ss_pred CCCceEEeccCCcH-HHH--------------------------------------------------------------
Q 011188 263 PDRQTLYWSATWPK-EVE-------------------------------------------------------------- 279 (491)
Q Consensus 263 ~~~~~i~~SAT~~~-~~~-------------------------------------------------------------- 279 (491)
... .+.+|+|+-. .+.
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444 4667888210 000
Q ss_pred --------------------------HHHHHHccC---CcEEEecCCCccccc---ce---eeee---------------
Q 011188 280 --------------------------HLARQYLYN---PYKVIIGSPDLKANH---AI---RQHV--------------- 309 (491)
Q Consensus 280 --------------------------~~~~~~~~~---~~~~~~~~~~~~~~~---~~---~~~~--------------- 309 (491)
++.+.+... .....++........ ++ .|+.
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000000000 000000000000000 00 0000
Q ss_pred -----------------eccChhhHHHHHHHHHHhhc---------------cCCeEEEEeCCcccHHHHHHHHHhCC--
Q 011188 310 -----------------DIVSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDG-- 355 (491)
Q Consensus 310 -----------------~~~~~~~k~~~l~~~l~~~~---------------~~~~~lVf~~~~~~~~~l~~~L~~~~-- 355 (491)
.......|...|.++|.++. .+.++||||+-+...+.+.+-|-+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 00123457777777777643 23489999999999999988886543
Q ss_pred -CceEEEcCCCCHHHHHHHHHHHhCC-CCcEEE-EeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcce--
Q 011188 356 -WPALSIHGDKSQAERDWVLSEFKAG-KSPIMT-ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT-- 430 (491)
Q Consensus 356 -~~~~~i~~~~~~~~r~~~~~~f~~g-~~~vLv-aT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~-- 430 (491)
+....+.|..++.+|.++.++|+++ .++||+ +|.+.+-|+|+.+++.||+++-.|+|..-+|.+-||+|.||+..
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 2344789999999999999999998 778765 67999999999999999999999999999999999999999875
Q ss_pred EEEEeCcc
Q 011188 431 AYTFFTAA 438 (491)
Q Consensus 431 ~~~~~~~~ 438 (491)
+|.+++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 45556554
No 126
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.89 E-value=6.8e-22 Score=196.17 Aligned_cols=319 Identities=23% Similarity=0.304 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+|-+||...++|+. .+-+.|+..++|.|||.. +++.+.+|.+.. ..|| -|||||+..|- .|.+++.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gp-HLVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGP-HLVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCC-cEEEecchhHH-HHHHHHHHhC
Confidence 58899999999864 345789999999999976 555777776632 2345 48999998775 4899999998
Q ss_pred CCCCceEEEEECCccChhhHHHhh----cCCcEEEeChHHHHHHHhc-cCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 184 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~~~~~~~----~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
+. ++|...||....+..++... .+.+|+++|+.....--.. ..+.-.+++++|+||+|.+.+.. ...+..++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 77 78888888775555544332 2589999998665321111 11123468899999999887765 33444433
Q ss_pred hhcCCCCceEEeccCCc-HHHHHHH---------------------------------------------H---------
Q 011188 259 SQIRPDRQTLYWSATWP-KEVEHLA---------------------------------------------R--------- 283 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT~~-~~~~~~~---------------------------------------------~--------- 283 (491)
. + ++...+++|+|+- +.+.++. +
T Consensus 549 ~-I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 S-I-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-c-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 2 2 2455688888821 0000000 0
Q ss_pred ----HHccC-C--cEEE-e--------------------cCCCccc-----------------ccce-------------
Q 011188 284 ----QYLYN-P--YKVI-I--------------------GSPDLKA-----------------NHAI------------- 305 (491)
Q Consensus 284 ----~~~~~-~--~~~~-~--------------------~~~~~~~-----------------~~~~------------- 305 (491)
..+.. | ...+ . ....... ++.+
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 00000 0 0000 0 0000000 0000
Q ss_pred ---------------eee-----------------------------eeccChhhHHHHHHHHHHhhcc-CCeEEEEeCC
Q 011188 306 ---------------RQH-----------------------------VDIVSESQKYNKLVKLLEDIMD-GSRILIFMDT 340 (491)
Q Consensus 306 ---------------~~~-----------------------------~~~~~~~~k~~~l~~~l~~~~~-~~~~lVf~~~ 340 (491)
.++ -...-...|...|..+|.+..+ +.+||||...
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000 0001125678888888887654 5799999999
Q ss_pred cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCC-C-cEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHh
Q 011188 341 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-S-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 418 (491)
Q Consensus 341 ~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~-~-~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr 418 (491)
-...+.|...|...++....+.|...-.+|+.+++.|...+ + -+|++|.+.+.|||+..+++||.+|...+|-+-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999999654 2 368899999999999999999999999999999999
Q ss_pred hhhcccCCCcce--EEEEeCcc
Q 011188 419 IGRTGRAGAKGT--AYTFFTAA 438 (491)
Q Consensus 419 ~GR~gR~g~~g~--~~~~~~~~ 438 (491)
--||+|.|+... ++.+++++
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecC
Confidence 999999999865 44456654
No 127
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.4e-22 Score=188.18 Aligned_cols=322 Identities=19% Similarity=0.271 Sum_probs=215.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEE
Q 011188 85 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 164 (491)
Q Consensus 85 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 164 (491)
+..|...++++...+.+++..-...+.++.+.+..+.+++-++++++||||||...--..+.+.... ...|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6778999999999999998877778888888889999999999999999999975322233333321 244777
Q ss_pred EcccHHHHHHHHHHHHH-----hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEE
Q 011188 165 LAPTRELAVQIQQESTK-----FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 239 (491)
Q Consensus 165 l~Pt~~L~~q~~~~~~~-----~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIi 239 (491)
..|.|.-|.+++..... ++...+..+ .+......+.-+-+||.+.|++...+.. .+..+++||+
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysI----------rfEdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiL 165 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSI----------RFEDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIIL 165 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccc----------cccccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEe
Confidence 88988777666655543 333333221 1111112223345688888877666543 3789999999
Q ss_pred ccccc-cccCC-cHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhH
Q 011188 240 DEADR-MLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 317 (491)
Q Consensus 240 DEah~-~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 317 (491)
||||. -+..+ ..-.++.++.. +++.++|.+|||+. ..++.. |+.++..+.+.. .+.+...+....+.+.
T Consensus 166 DeahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~--a~Kfq~-yf~n~Pll~vpg-----~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERTLATDILMGLLKEVVRN-RPDLKLVVMSATLD--AEKFQR-YFGNAPLLAVPG-----THPVEIFYTPEPERDY 236 (699)
T ss_pred chhhhhhHHHHHHHHHHHHHHhh-CCCceEEEeecccc--hHHHHH-HhCCCCeeecCC-----CCceEEEecCCCChhH
Confidence 99995 22111 11223333333 46999999999974 344544 444444444332 1223333333444555
Q ss_pred HHHHHHHHHhh---ccCCeEEEEeCCcccHHHHHHHHHhC---------CCceEEEcCCCCHHHHHHHHHHHhC---C--
Q 011188 318 YNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKA---G-- 380 (491)
Q Consensus 318 ~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~i~~~~~~~~r~~~~~~f~~---g-- 380 (491)
++..+..+-++ ...+-+|||....++.+..++.+... ...+..+| +.++..+++.... |
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 66555544433 23457999999999999999888643 24577777 3344444443321 2
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 381 KSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 381 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
..+|+|+|++++..+.++++.+||+-+. |.|..+..||.||+||. +.|+|+.++++.
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3469999999999999999999995443 66899999999999999 899999999974
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=1.2e-20 Score=196.77 Aligned_cols=146 Identities=19% Similarity=0.305 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecccccc
Q 011188 316 QKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 394 (491)
Q Consensus 316 ~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 394 (491)
.+...+.+.+... ..+.++||||+++..++.+++.|...++++..+|+++++.+|..+++.|+.|++.|+|||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 4455666666654 346689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHHhhhhcccCCCcceEEEEeCc---------ccHHHHHHHHHHHHHhCCCCCHH
Q 011188 395 LDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTA---------ANARFAKELITILEEAGQKVSPE 460 (491)
Q Consensus 395 idi~~~~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~~ 460 (491)
+|+|++++||+++. |.+...|+||+||+||. ..|.+++|++. .+....+++...+......+|..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999999885 77999999999999997 78999999984 35556666676777777777766
Q ss_pred HH
Q 011188 461 LA 462 (491)
Q Consensus 461 l~ 462 (491)
..
T Consensus 589 ~~ 590 (652)
T PRK05298 589 IK 590 (652)
T ss_pred HH
Confidence 54
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.5e-20 Score=189.33 Aligned_cols=315 Identities=20% Similarity=0.237 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|.-+--.+. +.-|+.+.||-|||+++.+|+....+. |..|-||+.+.-||..=++++..+...++
T Consensus 78 r~ydVQliGglvLh--~G~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILD--LGSVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHh--cCCeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 66667766655444 446899999999999999998776665 66788999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhcc------CccccCccEEEEccccccccC------------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDM------------ 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lIiDEah~~~~~------------ 248 (491)
++|.++..+...... .-...|||+++|...| .++|... ......+.+.||||+|.++=.
T Consensus 148 LsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 999988876554433 3344689999998775 3344332 122467889999999975410
Q ss_pred ----CcHHHHHHHHhhcCC-------C-----------------------------------------------------
Q 011188 249 ----GFEPQIKKILSQIRP-------D----------------------------------------------------- 264 (491)
Q Consensus 249 ----~~~~~~~~i~~~~~~-------~----------------------------------------------------- 264 (491)
.+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 011122222222211 0
Q ss_pred --------------------------------------------------------CceEEeccCCcHHHHHHHHHHccC
Q 011188 265 --------------------------------------------------------RQTLYWSATWPKEVEHLARQYLYN 288 (491)
Q Consensus 265 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 288 (491)
.++.+||+|...+..++...|..+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 134455555544444444444333
Q ss_pred CcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCH
Q 011188 289 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 367 (491)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~ 367 (491)
.+.+....+ ....-.....+.....|...+++.+.+. ..+.|+||.|.+.+..+.|+..|.+.|++..++++.-..
T Consensus 386 Vv~IPTnkP---~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 386 VNVVPTNKP---VIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EEECCCCCC---eeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 222211111 0001111123345667888888877664 467799999999999999999999999999999987544
Q ss_pred HHHHHHHHHHhCC-CCcEEEEeccccccCCCCCCC--------EEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 368 AERDWVLSEFKAG-KSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 368 ~~r~~~~~~f~~g-~~~vLvaT~~~~~Gidi~~~~--------~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
.+-..+- +.| ...|.|||++++||.||.--. +||....|.|..--.|..||+||.|.+|.+..|++-.
T Consensus 463 ~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 REAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 3333332 345 345999999999999996322 8999999999999999999999999999999888876
Q ss_pred cH
Q 011188 439 NA 440 (491)
Q Consensus 439 ~~ 440 (491)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 54
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=2.4e-20 Score=167.86 Aligned_cols=186 Identities=44% Similarity=0.639 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 104 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
.++.+|+++|.++++.+... +.+++.++||+|||.+++.+++..+...+ ..+++|++|++.++.|+...+.++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999998 99999999999999988888887776532 467999999999999999999988
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCC-cEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~-~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
............++............+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7665434455555555445555555565 999999999999888866667789999999999988756788888888888
Q ss_pred CCCCceEEeccCCcHHHHHHHHHHccCCcEEEec
Q 011188 262 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 295 (491)
Q Consensus 262 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
++..+++++|||+++........+......+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8889999999999988888888887755555433
No 131
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=196.70 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=115.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC-CC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA-SS 186 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~-~~ 186 (491)
.|..||.+.+..+-.++..+|+|||.+|||++--.++-..+.. .+...||+++|+++|++|+...+..-.. ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 6888999999999999999999999999998755544444443 2366799999999999999888775432 22
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc---cCccccCccEEEEccccccccCCcHHHHHHHHhhcCC
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 263 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~---~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~ 263 (491)
-.+...+.|....+.+.. .-.|.|+|+-|+.+..++.+ ......++.++|+||+|.+.+..-...++.++...
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 122233333322222111 22589999999999888877 34457789999999999998876555566665555
Q ss_pred CCceEEeccCCcH
Q 011188 264 DRQTLYWSATWPK 276 (491)
Q Consensus 264 ~~~~i~~SAT~~~ 276 (491)
.+.++.+|||+.+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 3668999999643
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=6e-19 Score=188.01 Aligned_cols=326 Identities=21% Similarity=0.242 Sum_probs=204.1
Q ss_pred CCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHHh
Q 011188 108 EPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~~i----~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~-~~~~~~~ 182 (491)
++|+-|.+....+ ..++.+++.|+||+|||++|++|++... .+++++|++||++|++|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 8999999955543 3567799999999999999999988753 256799999999999999 4667777
Q ss_pred cCCCCceEEEEECCccChh-----------------------------------------------hHHHh---------
Q 011188 183 GASSKIKSTCIYGGVPKGP-----------------------------------------------QVRDL--------- 206 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~-----------------------------------------------~~~~~--------- 206 (491)
....++.+..+.|+..+-- .+..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 6666777766665533100 00100
Q ss_pred ---------------hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-----c-------HHH------
Q 011188 207 ---------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-------EPQ------ 253 (491)
Q Consensus 207 ---------------~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-----~-------~~~------ 253 (491)
...++|+|++..-|...+.... .+...+++||||||++.+.. . ...
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 1124799999988877664433 35678999999999865311 0 000
Q ss_pred -------------------------------------HHH-------H--------H---hh------c-----------
Q 011188 254 -------------------------------------IKK-------I--------L---SQ------I----------- 261 (491)
Q Consensus 254 -------------------------------------~~~-------i--------~---~~------~----------- 261 (491)
+.. + . .. +
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 000 0 0 00 0
Q ss_pred ----------------CCCCceEEeccCCc--HHHHHHHHHHccCCcEEEecCCCcccccceeeeee----cc-----Ch
Q 011188 262 ----------------RPDRQTLYWSATWP--KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD----IV-----SE 314 (491)
Q Consensus 262 ----------------~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~ 314 (491)
+....+|++|||++ +.. .+.+.+..+............ . .+.+. .. .+
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~~~~~--~--~~~~~i~~~~p~~~~~~~ 629 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIEKDKK--Q--DQLVVVDQDMPLVTETSD 629 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCCCChH--H--ccEEEeCCCCCCCCCCCh
Confidence 01136688899984 222 244333322111111111100 0 11111 11 11
Q ss_pred hhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 315 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 315 ~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
+.....+.+.+..+ ..+++++|+++|.+.++.+++.|....+++ ...|... .+..++++|++++..||++|+.+.+
T Consensus 630 ~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 630 EVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhC
Confidence 23334455544333 235689999999999999999997654444 4444322 2456899999988889999999999
Q ss_pred cCCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhhhcccCCCcceEEEEeCcc--c
Q 011188 394 GLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--N 439 (491)
Q Consensus 394 Gidi~~--~~~VI~~~~p~------------------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~ 439 (491)
|||+|. ...||...+|. -...+.|.+||.-|...+--++++++.. .
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~ 786 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILT 786 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccc
Confidence 999973 55667666653 1345669999999986654445555553 5
Q ss_pred HHHHHHHHHHHH
Q 011188 440 ARFAKELITILE 451 (491)
Q Consensus 440 ~~~~~~l~~~l~ 451 (491)
+.+.+.+.+.|-
T Consensus 787 k~Yg~~~l~sLP 798 (820)
T PRK07246 787 KSYGKQILASLA 798 (820)
T ss_pred cHHHHHHHHhCC
Confidence 566677766664
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.84 E-value=5.4e-20 Score=173.81 Aligned_cols=313 Identities=16% Similarity=0.197 Sum_probs=211.7
Q ss_pred CCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 107 FEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..+-|+|.+.+...+ .|..+++..++|.|||+.++..+..+..+ . ..|||||. .+-..|++.+.+|.+.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------w-plliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------W-PLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------C-cEEEEecH-HHhHHHHHHHHHhccc
Confidence 467899999998766 57789999999999999866544333333 2 37899997 5778899999998765
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 265 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~ 265 (491)
..- +.++.++.+... .+.....|.|.+++.+..+-. ...-.++.+||+||+|.+.+.. ....+.++..+....
T Consensus 267 ~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 433 455555443321 122345799999988754322 1223458899999999877654 455666777777778
Q ss_pred ceEEeccCC----cHH---------------HHHHHHHHccCC-cEEEecCCCc-------------------------c
Q 011188 266 QTLYWSATW----PKE---------------VEHLARQYLYNP-YKVIIGSPDL-------------------------K 300 (491)
Q Consensus 266 ~~i~~SAT~----~~~---------------~~~~~~~~~~~~-~~~~~~~~~~-------------------------~ 300 (491)
++|++|+|+ |.+ ..+++..|+... ..+..+.... .
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999994 111 122233332211 1111100000 0
Q ss_pred cccceeeeeeccC-------------------------------------hhhHHHHHHHHHHhh-----ccCCeEEEEe
Q 011188 301 ANHAIRQHVDIVS-------------------------------------ESQKYNKLVKLLEDI-----MDGSRILIFM 338 (491)
Q Consensus 301 ~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~l~~~-----~~~~~~lVf~ 338 (491)
.+....+.+.... ...|...+.+.|.+. .++.+.+|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0000111111110 011233333333331 1345899999
Q ss_pred CCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC-CCcE-EEEeccccccCCCCCCCEEEEcCCCCChhHHH
Q 011188 339 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLDVKDVKYVINYDFPGSLEDYV 416 (491)
Q Consensus 339 ~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~ 416 (491)
......+.+...+.+.++....|.|..+..+|....+.|+.. +..| +++..+++.|+++..++.|++..++|++.-.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999964 4454 34558889999999999999999999999999
Q ss_pred HhhhhcccCCCcceEEEEeC
Q 011188 417 HRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 417 Qr~GR~gR~g~~g~~~~~~~ 436 (491)
|.--|++|.|++..+.+.+.
T Consensus 580 QAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred echhhhhhccccceeeEEEE
Confidence 99999999999876555444
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.84 E-value=1.9e-20 Score=187.16 Aligned_cols=358 Identities=18% Similarity=0.221 Sum_probs=211.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCE
Q 011188 86 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 161 (491)
Q Consensus 86 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 161 (491)
..|+.+.. .++..++.-..-.+|+|+|+.|+.+..++ ...=+.+.+|+|||+..+- +...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhh
Confidence 45555433 44555555566679999999999998864 3345567799999998665 333332 357
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH-------------------------HHhhcCCcEEEeC
Q 011188 162 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-------------------------RDLQKGVEIVIAT 216 (491)
Q Consensus 162 vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~-------------------------~~~~~~~~Iiv~T 216 (491)
+|+|+|+.+|..|..+++..- ....++...++++....... +....+--|+++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 999999999999988877753 23445555555443221110 1111234699999
Q ss_pred hHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC-----CCCceEEeccCCc---HHHHHH-------
Q 011188 217 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWP---KEVEHL------- 281 (491)
Q Consensus 217 ~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~---~~~~~~------- 281 (491)
++++...-+....-+..+++||+||||+.....+...=......+. +..+.+.||||+. +....-
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999877666666678999999999998543211100000000000 2234577888852 111111
Q ss_pred -----------------------HHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHH-------Hhhc--
Q 011188 282 -----------------------ARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL-------EDIM-- 329 (491)
Q Consensus 282 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-------~~~~-- 329 (491)
.+.++.+...++..-........+.+........-..+..-.++ +.-.
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 11122222222211111111111111111111111111111111 1100
Q ss_pred -----------cCCeEEEEeCCcccHHHHHHHHHh-------------CCC--ceEEEcCCCCHHHHHHHHHH---HhCC
Q 011188 330 -----------DGSRILIFMDTKKGCDQITRQLRM-------------DGW--PALSIHGDKSQAERDWVLSE---FKAG 380 (491)
Q Consensus 330 -----------~~~~~lVf~~~~~~~~~l~~~L~~-------------~~~--~~~~i~~~~~~~~r~~~~~~---f~~g 380 (491)
+-.++|-||.++++...+++.+.. .++ .+..+.|.|...+|...+.. |...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 112688999999888777766532 123 34456788998888554443 3456
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCC-cceEEEEeC---------------cccHHHHH
Q 011188 381 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---------------AANARFAK 444 (491)
Q Consensus 381 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~---------------~~~~~~~~ 444 (491)
+++||--..++++|||+|.++.||++++-.+..+.+|.+||+.|... +...|+++. ..+.+.++
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 77888888999999999999999999999999999999999999632 223444333 23456778
Q ss_pred HHHHHHHHhCC
Q 011188 445 ELITILEEAGQ 455 (491)
Q Consensus 445 ~l~~~l~~~~~ 455 (491)
.+++.|+..+.
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 88888887766
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=5.4e-19 Score=181.84 Aligned_cols=273 Identities=21% Similarity=0.174 Sum_probs=179.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
.|++.|.-+. +.-.+..|+.+.||.|||+++.+|+....+. |..|-||+++..||.+-++++..+...++
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4666666554 4445678999999999999999998765554 67799999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHH-HHHhcc------CccccCccEEEEccccccccCC-----------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRMLDMG----------- 249 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lIiDEah~~~~~~----------- 249 (491)
+++.++.++.+... +.....+||+++|...|- ++|... ......+.+.|+||+|.++=..
T Consensus 146 Lsvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEE--RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHH--HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999887665543 333456899999986542 233221 1134678899999999754000
Q ss_pred -----cHHHHHHHHhhcCC-------------------------------------------------------------
Q 011188 250 -----FEPQIKKILSQIRP------------------------------------------------------------- 263 (491)
Q Consensus 250 -----~~~~~~~i~~~~~~------------------------------------------------------------- 263 (491)
.......+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00111111111100
Q ss_pred -------------------------------------------------------CCceEEeccCCcHHHHHHHHHHccC
Q 011188 264 -------------------------------------------------------DRQTLYWSATWPKEVEHLARQYLYN 288 (491)
Q Consensus 264 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 288 (491)
-..+.+||+|...+..++...|..+
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 0245677777655555555444433
Q ss_pred CcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC-
Q 011188 289 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS- 366 (491)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~- 366 (491)
.+.+....+ .... -...........|...+.+-+.+ +..+.||||-|.|.+..+.++..|.+.+++..++++.-.
T Consensus 384 vv~IPtnkp--~~R~-d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVCIPTHRP--MLRK-DLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEECCCCCC--ccce-eCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 322211111 1111 11222334556677777766554 456779999999999999999999999999999999642
Q ss_pred -HHHHHHHHHHHhCC-CCcEEEEeccccccCCCC
Q 011188 367 -QAERDWVLSEFKAG-KSPIMTATDVAARGLDVK 398 (491)
Q Consensus 367 -~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gidi~ 398 (491)
..|-..+-+ .| .-.|.|||++++||.||.
T Consensus 461 ~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 333333333 34 345999999999999983
No 136
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=8.6e-20 Score=185.58 Aligned_cols=317 Identities=21% Similarity=0.315 Sum_probs=215.3
Q ss_pred CCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
++.+||.+.+.|+.+ +-+.|+..+||.|||.. .+.++.++.+.. ...|| .||+||+..|.+ |..++.++.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 899999999999764 34799999999999976 555777777643 23355 589999988876 788888776
Q ss_pred CCCCceEEEEECCccChh---hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 184 ASSKIKSTCIYGGVPKGP---QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 184 ~~~~~~v~~~~~g~~~~~---~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
+. +... .|.|..... .......+.+|+++|++.+.. ....+.--++.++||||.|+|.+. ...+...+..
T Consensus 468 PS--v~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 PS--VQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--eeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 54 3333 333332211 112233568999999988765 111222235679999999998764 3344444443
Q ss_pred cCCCCceEEeccCC------------------------------------------------------------------
Q 011188 261 IRPDRQTLYWSATW------------------------------------------------------------------ 274 (491)
Q Consensus 261 ~~~~~~~i~~SAT~------------------------------------------------------------------ 274 (491)
.......+++|+|+
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 33334445556661
Q ss_pred ---------cHHHHHHHHH------------------------------------------HccCCcEEEecCCCccccc
Q 011188 275 ---------PKEVEHLARQ------------------------------------------YLYNPYKVIIGSPDLKANH 303 (491)
Q Consensus 275 ---------~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~ 303 (491)
|+.++.+.+. .+..|+.+.. ...
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~------ve~ 694 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN------VEN 694 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh------hcc
Confidence 1111111110 0111110000 000
Q ss_pred ceeee---eeccChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC
Q 011188 304 AIRQH---VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 379 (491)
Q Consensus 304 ~~~~~---~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~ 379 (491)
..... ...+....|+..|..++-.+. -++++|.||....-++.+..+|.-.++....+.|....++|...++.|+.
T Consensus 695 ~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~ 774 (1157)
T KOG0386|consen 695 SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNA 774 (1157)
T ss_pred ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcC
Confidence 00000 112233456777777766654 36799999999999999999999999999999999999999999999997
Q ss_pred CCCc---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHH
Q 011188 380 GKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA 443 (491)
Q Consensus 380 g~~~---vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 443 (491)
-..+ +|.+|.+.+.|+|+..++.||.||..|++....|+.-|+.|.|+...+-++....-...-
T Consensus 775 Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 775 PDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred CCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 6543 788999999999999999999999999999999999999999998777766655433333
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.4e-18 Score=172.78 Aligned_cols=275 Identities=18% Similarity=0.193 Sum_probs=180.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
-++|+-.+.+-.+.-++.-|+.+.||-|||+++.+|+....+. |..|-||+++..||.+=++++..+...++
T Consensus 83 G~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 3444444455555556778999999999999999999877666 67799999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-----HHHHhc--cCccccCccEEEEcccccccc-CC----------
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRMLD-MG---------- 249 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-----~~~l~~--~~~~l~~~~~lIiDEah~~~~-~~---------- 249 (491)
++|.++.++... ..+.....|||+++|+..| .+.+.. .......+.+.||||+|.++= ..
T Consensus 155 Ltvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSP--EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCCh--HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 999998776544 3444556799999999876 333322 123356789999999997541 00
Q ss_pred -----cHHHHHHHHhhcCC--------------C----------------------------------------------
Q 011188 250 -----FEPQIKKILSQIRP--------------D---------------------------------------------- 264 (491)
Q Consensus 250 -----~~~~~~~i~~~~~~--------------~---------------------------------------------- 264 (491)
.......+...+.+ .
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 11111111111111 0
Q ss_pred --------------------------------------------------------------CceEEeccCCcHHHHHHH
Q 011188 265 --------------------------------------------------------------RQTLYWSATWPKEVEHLA 282 (491)
Q Consensus 265 --------------------------------------------------------------~~~i~~SAT~~~~~~~~~ 282 (491)
.++.+||+|...+..++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 133455555444444444
Q ss_pred HHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 011188 283 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSI 361 (491)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i 361 (491)
..|..+.+.+....+ ....-.....+.....|...+++.+.+. ..+.||||-|.|.+..+.+++.|.+.|++..++
T Consensus 393 ~iY~l~Vv~IPTnkP---~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNRP---RRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCCC---eeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 433322222211111 0111111222345567888888766665 467799999999999999999999999999999
Q ss_pred cCCC-C-HHHHHHHHHHHhCCC-CcEEEEeccccccCCCC
Q 011188 362 HGDK-S-QAERDWVLSEFKAGK-SPIMTATDVAARGLDVK 398 (491)
Q Consensus 362 ~~~~-~-~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~ 398 (491)
+..- . ..+-..+-+ .|+ -.|.|||++++||.||.
T Consensus 470 NAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 9962 2 333333332 343 35999999999999984
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=4.2e-17 Score=177.13 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccc
Q 011188 318 YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 393 (491)
Q Consensus 318 ~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 393 (491)
...+.+.+..+. .++++|||++|.+.++.+++.|..... ....+.-+++...|..+++.|+.++-.||++|..+.+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 345555554432 346899999999999999999975422 1222332343345788999999988889999999999
Q ss_pred cCCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhhhcccCCCcceEEEEeCcc--c
Q 011188 394 GLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--N 439 (491)
Q Consensus 394 Gidi~~--~~~VI~~~~p~------------------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~--~ 439 (491)
|||+|+ +.+||...+|. -...+.|.+||.-|..++--++++++.. .
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~ 896 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTT 896 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcccc
Confidence 999996 68888877664 1234569999999997664455566654 6
Q ss_pred HHHHHHHHHHHH
Q 011188 440 ARFAKELITILE 451 (491)
Q Consensus 440 ~~~~~~l~~~l~ 451 (491)
..+-+.+.+.+-
T Consensus 897 k~Yg~~~l~sLP 908 (928)
T PRK08074 897 TSYGKYFLESLP 908 (928)
T ss_pred chHHHHHHHhCC
Confidence 667777777764
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.80 E-value=1.2e-16 Score=163.03 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=85.2
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC----CCcEEEEeccccccCCC--------
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG----KSPIMTATDVAARGLDV-------- 397 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~Gidi-------- 397 (491)
.+++++|.+.+...++.+++.|...---...+.|+.+ .+..++++|+.. .-.||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3568999999999999999999754223345556543 345688888874 67899999999999999
Q ss_pred C--CCCEEEEcCCCC-------------------------ChhHHHHhhhhcccCCCc--ceEEEEeC-cccHHHHHHHH
Q 011188 398 K--DVKYVINYDFPG-------------------------SLEDYVHRIGRTGRAGAK--GTAYTFFT-AANARFAKELI 447 (491)
Q Consensus 398 ~--~~~~VI~~~~p~-------------------------s~~~~~Qr~GR~gR~g~~--g~~~~~~~-~~~~~~~~~l~ 447 (491)
| .+++||+..+|. ....+.|-+||.-|...+ --.+++++ .-.+.+.+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 3 388999888774 133456899999998765 33344444 33455666555
Q ss_pred HHHH
Q 011188 448 TILE 451 (491)
Q Consensus 448 ~~l~ 451 (491)
+..+
T Consensus 627 ~~~~ 630 (636)
T TIGR03117 627 ESVK 630 (636)
T ss_pred HHHH
Confidence 5544
No 140
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=174.23 Aligned_cols=122 Identities=21% Similarity=0.326 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEeccc
Q 011188 315 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDVA 391 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 391 (491)
-.|++.|.-+|+++. .+.++|||+...+..+-|..+|+..|+....+.|...-++|+..+++|+... ..+|++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 468888888888875 4669999999999999999999999999999999999999999999999764 3578899999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 392 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
+.|||+-+++.||+||..||+.--.|.--|++|.|+...+.+|-.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 999999999999999999999999999999999998765555433
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=7.7e-19 Score=146.88 Aligned_cols=119 Identities=45% Similarity=0.756 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecccccc
Q 011188 316 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 394 (491)
Q Consensus 316 ~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 394 (491)
.|...+.+++.... .+.++||||++...++.+++.|.+.+.++..+|++++..+|..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 68888888888764 46689999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEE
Q 011188 395 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 434 (491)
Q Consensus 395 idi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 434 (491)
+|+|.+++||++++|++..++.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 142
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=3.9e-18 Score=163.70 Aligned_cols=327 Identities=14% Similarity=0.092 Sum_probs=223.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 100 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 100 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
.++++.-.....+|.+++..+-+|+++++.-.|.+||.+++.......+...+ ....++..|+.+++....+.+
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCce
Confidence 33444555788999999999999999999999999999999988877766543 455789999999986654433
Q ss_pred HHhc---CCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc----cccCccEEEEccccccccCC---
Q 011188 180 TKFG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT----NLRRVTYLVLDEADRMLDMG--- 249 (491)
Q Consensus 180 ~~~~---~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~----~l~~~~~lIiDEah~~~~~~--- 249 (491)
.-.. +...-.++..+.+........-.+.+.+++++.|............ .+-...++++||+|......
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 2111 1111123334444444344444566789999999887654332222 23345678999999654321
Q ss_pred cHHHHHHHHhhc-----CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC---------hh
Q 011188 250 FEPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS---------ES 315 (491)
Q Consensus 250 ~~~~~~~i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 315 (491)
...+++.++..+ .-+.+++-.+||+.+.++.....+..+...++......... +..+...+ .+
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~---K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSE---KLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCcc---ceEEEeCCCCCCcchhhhh
Confidence 123334443333 24679999999998877766666555555554433221111 11111111 12
Q ss_pred hHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhC----C----CceEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 316 QKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD----G----WPALSIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 316 ~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~----~----~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
.+......++.+ ...+-++|-||++++.|+.+....+.. + -.+..+.|+.+.++|.++...+-.|+..-+|
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 333444444444 345669999999999998876554432 1 1355788999999999999999999999999
Q ss_pred EeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEe
Q 011188 387 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 435 (491)
Q Consensus 387 aT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 435 (491)
+|++++-||||..++.|++.+.|.|.+.+.|..||+||..++..++.+.
T Consensus 589 aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred ecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEE
Confidence 9999999999999999999999999999999999999998877655443
No 143
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.78 E-value=2.6e-18 Score=168.54 Aligned_cols=126 Identities=23% Similarity=0.364 Sum_probs=110.6
Q ss_pred ChhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCc-EEEEecc
Q 011188 313 SESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDV 390 (491)
Q Consensus 313 ~~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~-vLvaT~~ 390 (491)
.+..|+..|.++|..+. .+.++|+|.+.-+..+.+.++|...++....+.|.....+|..++.+|+..++- +|++|.+
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 34678888888888765 466999999999999999999999999999999999999999999999986554 6789999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcce--EEEEeCcc
Q 011188 391 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT--AYTFFTAA 438 (491)
Q Consensus 391 ~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 438 (491)
.+-|||+..++.||+||..|++..-.|...||+|-|+... +|.+++..
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999998755 44455543
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=2e-18 Score=130.06 Aligned_cols=78 Identities=44% Similarity=0.705 Sum_probs=75.5
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCC
Q 011188 349 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 426 (491)
Q Consensus 349 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g 426 (491)
++|+..++++..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+|+.+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=8.2e-17 Score=154.67 Aligned_cols=266 Identities=18% Similarity=0.209 Sum_probs=179.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
-++-++||.||||.- +++++.. .+..++.-|.|-||..+++.+.+.+ +.+..++|.........
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN 256 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC
Confidence 366679999999987 5666665 4557899999999999999998876 44444555332211111
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC-CCCceEEeccCCcHHHHHHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~ 283 (491)
...+..+-||.++. .. -..+++.|+||++.|.+...+-.+.+.+.-+. ...++- +- +.+.++.+
T Consensus 257 --~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---Ge--psvldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---GE--PSVLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---CC--chHHHHHH
Confidence 22356677776554 11 24688999999999998776655555543332 222221 11 23344444
Q ss_pred HHcc---CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCc-eE
Q 011188 284 QYLY---NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-AL 359 (491)
Q Consensus 284 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~ 359 (491)
..+. +.+.+. ..+ -...-.-.+.+..-+..+.++..++ |-+++....+...+.+.+.. +.
T Consensus 322 ~i~k~TGd~vev~--~Ye------------Rl~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 322 KILKMTGDDVEVR--EYE------------RLSPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHhhcCCeeEEE--eec------------ccCcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceE
Confidence 4432 222221 110 0111011123445555666665444 44678899999999888665 99
Q ss_pred EEcCCCCHHHHHHHHHHHhC--CCCcEEEEeccccccCCCCCCCEEEEcCCC---------CChhHHHHhhhhcccCCC-
Q 011188 360 SIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDFP---------GSLEDYVHRIGRTGRAGA- 427 (491)
Q Consensus 360 ~i~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p---------~s~~~~~Qr~GR~gR~g~- 427 (491)
+|+|+++++.|..--..|++ ++++||||||++++|+|+ +++.||++++- .+..+..|-+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999997 899999999999999999 89999988863 468899999999999874
Q ss_pred --cceEEEEeCcc
Q 011188 428 --KGTAYTFFTAA 438 (491)
Q Consensus 428 --~g~~~~~~~~~ 438 (491)
.|.+.++..++
T Consensus 465 ~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 465 YPQGEVTTLHSED 477 (700)
T ss_pred CcCceEEEeeHhh
Confidence 37777766653
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=7.1e-17 Score=136.65 Aligned_cols=144 Identities=44% Similarity=0.577 Sum_probs=110.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
+++++.++||+|||.+++..+....... ..++++|++|++.++.|+.+.+...... ...+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999999887666655431 2568999999999999999999987765 56777777766555555
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
.......+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55566789999999999887776555566789999999999887654443323344456778899999995
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.5e-16 Score=165.40 Aligned_cols=127 Identities=21% Similarity=0.321 Sum_probs=104.2
Q ss_pred cChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 312 VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 312 ~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
.....|+..+++-+.+. ..+.||||-+.|.+..+.|++.|...+++..++++.....+-+.+-+.=+. -.|-|||++
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNM 685 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNM 685 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccC
Confidence 34567888888777665 457799999999999999999999999999999887665555544443333 349999999
Q ss_pred ccccCCCC--------CCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccH
Q 011188 391 AARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 440 (491)
Q Consensus 391 ~~~Gidi~--------~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 440 (491)
++||.||. +=-+||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999996 224889999999999999999999999999999999887654
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.72 E-value=1.3e-15 Score=144.34 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhhccC---CeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC-CCcE-EEEec
Q 011188 315 SQKYNKLVKLLEDIMDG---SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATD 389 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~~~---~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~ 389 (491)
..|++.|.+-|..+.+. .+.|||.+.-...+.+.-.|.+.|+.++.+.|+|++..|..+++.|.+. ++.| |++-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 45666666655544332 3789999999999999999999999999999999999999999999975 4554 55669
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcc--eEEEEeCcccHHHHHHHHHHHHHhCCCC
Q 011188 390 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEEAGQKV 457 (491)
Q Consensus 390 ~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 457 (491)
+.+.-+|+..+.+|+..|+.|+++--.|...|.+|.|+.. .++.|+-++. .-.+++++.+++.+.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns--iE~kIieLQeKKa~mi 766 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS--IEEKIIELQEKKANMI 766 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc--HHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999764 4556665543 3455666666554433
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=9.7e-17 Score=142.57 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~-------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+... .. +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999998873 5789999999999999877534333 32 69999999999999999997
Q ss_pred HhcCCCCceEEEE-----------ECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc-----------CccccCccEEE
Q 011188 181 KFGASSKIKSTCI-----------YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----------NTNLRRVTYLV 238 (491)
Q Consensus 181 ~~~~~~~~~v~~~-----------~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----------~~~l~~~~~lI 238 (491)
.+........... .................+++++|.+.|....... ......+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 7654421111110 0001111112223445789999999998775431 12345678999
Q ss_pred EccccccccCCcHHHHHHHHhhcCCCCceEEeccCCc
Q 011188 239 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 275 (491)
Q Consensus 239 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 275 (491)
+||||++.... .+..++. .+...+|+||||+.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999976422 1556655 56777999999975
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=5.1e-16 Score=161.33 Aligned_cols=312 Identities=18% Similarity=0.235 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCC
Q 011188 108 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~ 185 (491)
..+|+|.++++.+.+ +.++++.+|+|||||.++-++++. +....++++++|..+.+..+++.+. +|.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 448999999998875 556999999999999998887664 2345679999999999977666555 68777
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHH------HHHHHHh
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP------QIKKILS 259 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~------~~~~i~~ 259 (491)
.+..++.+.|..+.+.. +....+|+|+||+++-. ++ +.+.+++.|.||.|.+.+.. ++ .++.+-.
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHH
Confidence 88888888887765433 33456899999999844 43 57789999999999877432 21 2556666
Q ss_pred hcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccce---eeeeeccChhhHHHH-----HHHHHHhhccC
Q 011188 260 QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAI---RQHVDIVSESQKYNK-----LVKLLEDIMDG 331 (491)
Q Consensus 260 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~-----l~~~l~~~~~~ 331 (491)
.+.++.+++.+|..+.+ ..++ ....+..+..-.+. .....+ .|.+........... +..+.+....+
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~---ig~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDL---IGASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhh---ccccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 67788899999988754 3333 22222222211111 111222 222322222221111 12222333456
Q ss_pred CeEEEEeCCcccHHHHHHHHHh----------------------CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec
Q 011188 332 SRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 389 (491)
Q Consensus 332 ~~~lVf~~~~~~~~~l~~~L~~----------------------~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 389 (491)
++.+||++++++|..++..|-. ...+..+=|.+++..+...+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 7999999999999777644411 112222238899999999999999999999999886
Q ss_pred cccccCCCCCCCEEE-----EcC------CCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 390 VAARGLDVKDVKYVI-----NYD------FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 390 ~~~~Gidi~~~~~VI-----~~~------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
- ..|+-... +.|| .|| .+.+.....||+|++.| .|.|+++....++.+++++.
T Consensus 1440 ~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1440 D-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred c-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 5 77777643 3343 233 24458999999999999 47899999888887776543
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=6.7e-16 Score=152.06 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC--CCCcEEE-Ee
Q 011188 314 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA--GKSPIMT-AT 388 (491)
Q Consensus 314 ~~~k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~--g~~~vLv-aT 388 (491)
...|...+++.+++.. ...+++|...-.....-+...|.+.|+....+||.....+|+.+++.|+. |..+|++ +-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 3457777777777652 34578888877777888889999999999999999999999999999984 4455655 45
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEE
Q 011188 389 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 434 (491)
Q Consensus 389 ~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 434 (491)
.+.+.|+|+...+|+|.+|+-|++.--.|..-|.-|+|++-.+++.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 8889999999999999999999999999999999999998766654
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.69 E-value=4.2e-14 Score=149.10 Aligned_cols=129 Identities=20% Similarity=0.365 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHh----CCCCcEEEEeccc
Q 011188 318 YNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVA 391 (491)
Q Consensus 318 ~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~ 391 (491)
...+.+.+..+. ..+.+|||+++.+.++.++..|... +.+ ...++.. .+..+++.|+ .++..||++|..+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 444444444322 3446999999999999999998743 333 3445542 4667786676 4677799999999
Q ss_pred cccCCCCC--CCEEEEcCCCCC------------------------------hhHHHHhhhhcccCCCcceEEEEeCcc-
Q 011188 392 ARGLDVKD--VKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA- 438 (491)
Q Consensus 392 ~~Gidi~~--~~~VI~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~- 438 (491)
.+|||+|+ +++||...+|.. ...+.|.+||.-|...+--+++++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999996 788998887641 223558899999986654445555553
Q ss_pred -cHHHHHHHHHHH
Q 011188 439 -NARFAKELITIL 450 (491)
Q Consensus 439 -~~~~~~~l~~~l 450 (491)
...+.+.+++.|
T Consensus 676 ~~~~Yg~~~l~sL 688 (697)
T PRK11747 676 LTKRYGKRLLDAL 688 (697)
T ss_pred cchhHHHHHHHhC
Confidence 556666666655
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.68 E-value=3.1e-14 Score=151.28 Aligned_cols=133 Identities=17% Similarity=0.299 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhc--cCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCCHHHHHHHHHHHhCCCC-cEEEEecccc
Q 011188 317 KYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAA 392 (491)
Q Consensus 317 k~~~l~~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~i~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~ 392 (491)
-...+...+..+. .++++|||+++.+.++.+++.+...... ....++..+. ...++.|+.+.- -++|+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeecccc
Confidence 3444444444332 2347999999999999999999876542 3445555443 467888876544 8999999999
Q ss_pred ccCCCCC--CCEEEEcCCCC------------------------------ChhHHHHhhhhcccCCCcceEEEEeCcc--
Q 011188 393 RGLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-- 438 (491)
Q Consensus 393 ~Gidi~~--~~~VI~~~~p~------------------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-- 438 (491)
+|||+|+ +..||....|. -.....|.+||+-|...+.-++++++..
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~ 619 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYA 619 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccch
Confidence 9999986 67888777765 3566779999999976554445555543
Q ss_pred cHHHHHHHHHHHHH
Q 011188 439 NARFAKELITILEE 452 (491)
Q Consensus 439 ~~~~~~~l~~~l~~ 452 (491)
...+-..+.+.+..
T Consensus 620 ~~~y~~~l~~~l~~ 633 (654)
T COG1199 620 TKRYGKLLLDSLPP 633 (654)
T ss_pred hhhHHHHHHHhCCC
Confidence 33344455544433
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.3e-13 Score=146.62 Aligned_cols=142 Identities=17% Similarity=0.241 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhcc--CCeEEEEeCCcccHHHHHHHHHhCCC-------ceEEEcCCCCHHHHHHHHHHHhC----CCCc
Q 011188 317 KYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQAERDWVLSEFKA----GKSP 383 (491)
Q Consensus 317 k~~~l~~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~i~~~~~~~~r~~~~~~f~~----g~~~ 383 (491)
-...+.+.|.++.. ++.+|||++|...++.+.+.+...+. +...+-+ -...++..+++.|+. ++-.
T Consensus 506 ~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCce
Confidence 34455555544332 35799999999999999998875432 2222222 222577889999964 4556
Q ss_pred EEEEe--ccccccCCCCC--CCEEEEcCCCC-C------------------------------hhHHHHhhhhcccCCCc
Q 011188 384 IMTAT--DVAARGLDVKD--VKYVINYDFPG-S------------------------------LEDYVHRIGRTGRAGAK 428 (491)
Q Consensus 384 vLvaT--~~~~~Gidi~~--~~~VI~~~~p~-s------------------------------~~~~~Qr~GR~gR~g~~ 428 (491)
||+|+ ..+++|||+++ ++.||.+++|. + .....|.+||+-|..++
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999987 78999898875 1 12345999999999666
Q ss_pred ceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhccCC
Q 011188 429 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 468 (491)
Q Consensus 429 g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 468 (491)
--++++++.. +.. .+....+|+|+.......
T Consensus 665 ~G~iillD~R---~~~------~~~~~~lp~W~~~~~~~~ 695 (705)
T TIGR00604 665 YGSIVLLDKR---YAR------SNKRKKLPKWIQDTIQSS 695 (705)
T ss_pred eEEEEEEehh---cCC------cchhhhcCHHHHhhcccc
Confidence 4455555443 211 123356688887765543
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=6.7e-14 Score=145.00 Aligned_cols=279 Identities=11% Similarity=0.083 Sum_probs=164.6
Q ss_pred EEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh---HH
Q 011188 128 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VR 204 (491)
Q Consensus 128 i~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~---~~ 204 (491)
..+.+|||||.+|+-.+-..+.. |..+|||+|...|+.|+.+.+++.+.. ..+..++++.+..+. +.
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHH
Confidence 33446999999988855554444 778999999999999999999976532 457778887665443 33
Q ss_pred Hhhc-CCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-----cHHHHHHHHhhcCCCCceEEeccCCcHHH
Q 011188 205 DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEV 278 (491)
Q Consensus 205 ~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 278 (491)
.... ...|+|+|...+ ...+.++++||+||-|.-.-.. |...=..++.....+..+|+.|||++-+.
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 3333 478999996554 3457899999999999533211 11111122333346778999999986554
Q ss_pred HHHHHHHccCCcEEEecCCCcccccceeeeeeccC-----hh-h----HHHHHHHHHHhhccCCeEEEEeCCcccH----
Q 011188 279 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-----ES-Q----KYNKLVKLLEDIMDGSRILIFMDTKKGC---- 344 (491)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~----k~~~l~~~l~~~~~~~~~lVf~~~~~~~---- 344 (491)
...+.. .....+..............+.+.... +. . --..+.+.+++..+.+++|||+|.+..+
T Consensus 308 ~~~~~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~ 385 (665)
T PRK14873 308 QALVES--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHhc--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeE
Confidence 433321 111111111100000001111111100 00 0 1123444454433333999999987665
Q ss_pred -------------------------------------------------------HHHHHHHHhC--CCceEEEcCCCCH
Q 011188 345 -------------------------------------------------------DQITRQLRMD--GWPALSIHGDKSQ 367 (491)
Q Consensus 345 -------------------------------------------------------~~l~~~L~~~--~~~~~~i~~~~~~ 367 (491)
+++++.|.+. +.++..+.
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d----- 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG----- 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-----
Confidence 3333444332 12222222
Q ss_pred HHHHHHHHHHhCCCCcEEEEec----cccccCCCCCCCEEEEcCCCC------------ChhHHHHhhhhcccCCCcceE
Q 011188 368 AERDWVLSEFKAGKSPIMTATD----VAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTA 431 (491)
Q Consensus 368 ~~r~~~~~~f~~g~~~vLvaT~----~~~~Gidi~~~~~VI~~~~p~------------s~~~~~Qr~GR~gR~g~~g~~ 431 (491)
++.+++.|. ++.+|||+|. +++ ++++.|+..|... ....+.|..||+||....|.+
T Consensus 461 --~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 461 --GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred --hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 234788886 5899999998 555 3667776655432 245567889999999888998
Q ss_pred EEEeCcc
Q 011188 432 YTFFTAA 438 (491)
Q Consensus 432 ~~~~~~~ 438 (491)
++...++
T Consensus 533 ~iq~~p~ 539 (665)
T PRK14873 533 VVVAESS 539 (665)
T ss_pred EEEeCCC
Confidence 8876443
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.64 E-value=7.1e-14 Score=146.39 Aligned_cols=312 Identities=20% Similarity=0.230 Sum_probs=179.6
Q ss_pred CCCcHHHHHHHHHhhc----C--Cc--EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 107 FEPTPIQAQGWPMALK----G--RD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~----~--~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
..-+.||-+|+..+.. . +. +|-.|.||+|||++=.- |+..+.. ...+.++.|-.-.|.|..|.-+.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457799999988764 1 22 55569999999987433 4444433 23467888888888888888777
Q ss_pred HHHhcCCCCceEEEEECCccChhhH-------------------------------------------HHhhc-------
Q 011188 179 STKFGASSKIKSTCIYGGVPKGPQV-------------------------------------------RDLQK------- 208 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~~~-------------------------------------------~~~~~------- 208 (491)
+++-..-.+-...+++|+....+.. ..+.+
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 7764333333344444442211100 00000
Q ss_pred -CCcEEEeChHHHHHHHhccC---cccc----CccEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccCCcHHHH
Q 011188 209 -GVEIVIATPGRLIDMLESHN---TNLR----RVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVE 279 (491)
Q Consensus 209 -~~~Iiv~T~~~l~~~l~~~~---~~l~----~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 279 (491)
..+|+|||++.++....... ..+. .-+.|||||+|..-... ...+..++.-+ .-..++++||||+|+...
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 13799999999887663211 1111 12579999999643222 23333443321 135789999999998765
Q ss_pred HH-HHHH----------ccC---CcEEE---ecCCCcc----------------------------cccceeeeeeccC-
Q 011188 280 HL-ARQY----------LYN---PYKVI---IGSPDLK----------------------------ANHAIRQHVDIVS- 313 (491)
Q Consensus 280 ~~-~~~~----------~~~---~~~~~---~~~~~~~----------------------------~~~~~~~~~~~~~- 313 (491)
.. ...| ... +..+. ++..... ........+.+..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 43 2222 121 22221 1110000 0000001111111
Q ss_pred ---hhhHHHHHHHHHHh----hc---------cCCe---EEEEeCCcccHHHHHHHHHhC----C--CceEEEcCCCCHH
Q 011188 314 ---ESQKYNKLVKLLED----IM---------DGSR---ILIFMDTKKGCDQITRQLRMD----G--WPALSIHGDKSQA 368 (491)
Q Consensus 314 ---~~~k~~~l~~~l~~----~~---------~~~~---~lVf~~~~~~~~~l~~~L~~~----~--~~~~~i~~~~~~~ 368 (491)
.......+.+.+.+ +. .+++ .+|-+++++.+-.+++.|-.. + +.+..+|+.....
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 11122233332221 11 1122 477888888888888887543 2 3477899999877
Q ss_pred HHHHHHHHH----------------------hC----CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhc
Q 011188 369 ERDWVLSEF----------------------KA----GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 422 (491)
Q Consensus 369 ~r~~~~~~f----------------------~~----g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~ 422 (491)
.|..+++.. .+ +...|+|+|++++.|+|+ +.+++|- -|.+....+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcc
Confidence 777666553 11 356799999999999999 7788774 345589999999999
Q ss_pred ccCCCc
Q 011188 423 GRAGAK 428 (491)
Q Consensus 423 gR~g~~ 428 (491)
.|.+..
T Consensus 877 ~R~~~~ 882 (1110)
T TIGR02562 877 NRHRLE 882 (1110)
T ss_pred cccccC
Confidence 998753
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.1e-15 Score=116.22 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC
Q 011188 346 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 346 ~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
.+++.|+..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011188 426 G 426 (491)
Q Consensus 426 g 426 (491)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=4.5e-14 Score=155.87 Aligned_cols=337 Identities=21% Similarity=0.244 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 107 FEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~-----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
.+++++|.+.++++. .+.+.++..++|.|||+..+. .+.++.... ....+.++++||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~-~l~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIA-LLLSLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHH-HHHhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 478999999998865 256788899999999987544 333333221 1114568999998 677889999999
Q ss_pred hcCCCCceEEEEECCccC----hhhHHHhhcC-----CcEEEeChHHHHHHH-hccCccccCccEEEEccccccccCCcH
Q 011188 182 FGASSKIKSTCIYGGVPK----GPQVRDLQKG-----VEIVIATPGRLIDML-ESHNTNLRRVTYLVLDEADRMLDMGFE 251 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~~~----~~~~~~~~~~-----~~Iiv~T~~~l~~~l-~~~~~~l~~~~~lIiDEah~~~~~~~~ 251 (491)
+.+.... +...+|.... ......+... .+++++|++.+.... ......-..+.++|+||+|.+.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8776543 5555655431 2333333332 689999999987732 1122334567899999999866543 1
Q ss_pred HHHHHHHhhcCCCCceEEeccCC-cHHHHH---HHH-HHccC---------------Cc---------------------
Q 011188 252 PQIKKILSQIRPDRQTLYWSATW-PKEVEH---LAR-QYLYN---------------PY--------------------- 290 (491)
Q Consensus 252 ~~~~~i~~~~~~~~~~i~~SAT~-~~~~~~---~~~-~~~~~---------------~~--------------------- 290 (491)
.....+. .++... .+.+|.|+ .+.+.+ +.. .++.. +.
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1111111 222111 24444442 110000 000 00000 00
Q ss_pred -----------EE--Ee-cCC---------Cc--------------------------ccc----------cc-------
Q 011188 291 -----------KV--II-GSP---------DL--------------------------KAN----------HA------- 304 (491)
Q Consensus 291 -----------~~--~~-~~~---------~~--------------------------~~~----------~~------- 304 (491)
.- .. ..+ .. ... ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 00 00 000 00 000 00
Q ss_pred eeeee---ecc-----------------------------Chh-hHHHHHHHHH-Hh-hccCC--eEEEEeCCcccHHHH
Q 011188 305 IRQHV---DIV-----------------------------SES-QKYNKLVKLL-ED-IMDGS--RILIFMDTKKGCDQI 347 (491)
Q Consensus 305 ~~~~~---~~~-----------------------------~~~-~k~~~l~~~l-~~-~~~~~--~~lVf~~~~~~~~~l 347 (491)
+.+.. ... ... .|...+.+++ .. ...+. +++||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 00000 000 001 5677777777 33 34455 899999999999999
Q ss_pred HHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC
Q 011188 348 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 348 ~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
...|+..++....++|.++.++|..+++.|.++ ..-+++++.+.+.|+|+..+++||++|+.|++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999988899999999999999999999986 344667779999999999999999999999999999999999999
Q ss_pred CCcceEEEEeCcccHHHHHHHHHHHHH
Q 011188 426 GAKGTAYTFFTAANARFAKELITILEE 452 (491)
Q Consensus 426 g~~g~~~~~~~~~~~~~~~~l~~~l~~ 452 (491)
|++..+.++-.......-+.+.+....
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 998776655444433333444444333
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.58 E-value=2e-13 Score=139.53 Aligned_cols=289 Identities=17% Similarity=0.204 Sum_probs=185.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
-.++.+|+|||||.+. +..+.....+ ...++|+|+.+++|+.++...++..+-. ++. .|.+.... ...
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID 118 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc
Confidence 3678899999999874 3344443322 2678999999999999999999865321 111 12111110 000
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHH-------HHHHHhhcCCCCceEEeccCCcHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ-------IKKILSQIRPDRQTLYWSATWPKE 277 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~-------~~~i~~~~~~~~~~i~~SAT~~~~ 277 (491)
....+-+++..++|.++. ...+.++++||+||+-.++..-|.+. +..+...+.....+|++-|++.+.
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 113467777777875543 22356799999999997665433222 222344456788999999999999
Q ss_pred HHHHHHHHccC-CcEEEecCCCcccccceeeeee-----------------------------------ccChhhHHHHH
Q 011188 278 VEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVD-----------------------------------IVSESQKYNKL 321 (491)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~k~~~l 321 (491)
..++......+ ++.+++.... .....-.+-+. .....+.....
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 99998887654 3444332211 10000000000 00012234455
Q ss_pred HHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccccccCCCCC--
Q 011188 322 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-- 399 (491)
Q Consensus 322 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~-- 399 (491)
-.++..+..++++.||+.|...++.+++..+.....+..+++..+..+ + +.| ++.+|++-|.++..|+++..
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhh
Confidence 566667777889999999999999999999988888999988766552 2 222 56889999999999999964
Q ss_pred CCEEEEcCCC----CChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 400 VKYVINYDFP----GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 400 ~~~VI~~~~p----~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
.+-|+-|=-| .+..+..|++||+-.- .....+++++..
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 3334433112 2355689999999555 456677777654
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.57 E-value=8.5e-14 Score=141.08 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHhhcc-CCeEEEEeCCcccHHHHHHHHHhC----------------------CCceEEEcCCCCHHHHH
Q 011188 315 SQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMD----------------------GWPALSIHGDKSQAERD 371 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~----------------------~~~~~~i~~~~~~~~r~ 371 (491)
..|.-.|+++|+.... +.++|||.++....+.+..+|... |...+.|.|.....+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 3456667777776543 679999999999999999998531 34567899999999999
Q ss_pred HHHHHHhCCC----CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 372 WVLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 372 ~~~~~f~~g~----~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
.....|++-. .-+||+|.+.+-|||+-.++.||+||..|+|.--.|.|=|+.|.|+.--||+|-.-.
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 9999998632 238999999999999999999999999999999999999999999998888765543
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.55 E-value=5.3e-12 Score=122.96 Aligned_cols=290 Identities=19% Similarity=0.262 Sum_probs=200.2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCC-CceE----EEEEC--------------CccChhhHHHhh------------
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASS-KIKS----TCIYG--------------GVPKGPQVRDLQ------------ 207 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~v----~~~~~--------------g~~~~~~~~~~~------------ 207 (491)
.|+||||+|+|..|.++.+.+.++.... .+.- ..-+| ..........+.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6899999999999999988887765441 1000 00001 000111111111
Q ss_pred -------------cCCcEEEeChHHHHHHHhc------cCccccCccEEEEccccccccCCcHHHHHHHHhhc---CC--
Q 011188 208 -------------KGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RP-- 263 (491)
Q Consensus 208 -------------~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~---~~-- 263 (491)
...|||||+|=-|...+.. ....|+.+.++|+|.||.++-.. -..+..++..+ |.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 1358999999888766663 23458899999999999766443 23444444443 22
Q ss_pred -------------------CCceEEeccCCcHHHHHHHHHHccCCcEE-EecCCC------cccccceeeeeeccC----
Q 011188 264 -------------------DRQTLYWSATWPKEVEHLARQYLYNPYKV-IIGSPD------LKANHAIRQHVDIVS---- 313 (491)
Q Consensus 264 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~---- 313 (491)
-+|+|++|+...+++..+....+.+..-. .+.... ......+.|.+.-.+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 25999999999999999888866553211 111111 123334555554322
Q ss_pred ---hhhHHHHHHH-HHHhhc---cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q 011188 314 ---ESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 386 (491)
Q Consensus 314 ---~~~k~~~l~~-~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLv 386 (491)
.+.+++.+.. ++..+. ....+|||+++.-+--.+.++|++.++....+|...+..+-..+-..|..|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 2334444443 333333 345799999999999999999999999999999999999999999999999999999
Q ss_pred Eecc--ccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCC------cceEEEEeCcccHHHHHHHHHH
Q 011188 387 ATDV--AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFAKELITI 449 (491)
Q Consensus 387 aT~~--~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~------~g~~~~~~~~~~~~~~~~l~~~ 449 (491)
.|.- .-+-..|.++.+||+|.+|..+.-|...+.-...... ...|.++++.-|.-.++.|+-.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 9964 4567788899999999999999999888876665543 5789999999888777666544
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.52 E-value=6.7e-13 Score=136.65 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=206.9
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
-++|+-.+.+-.+.-+..-++-+.||-|||+++.+|+.-..+. +..|.+|+..--||..-.+++.++...++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 4566667777777777888999999999999999998766665 66688999999999999999999999999
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHH-HHHHhc------cCccccCccEEEEcccccccc----------C--
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLD----------M-- 248 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~------~~~~l~~~~~lIiDEah~~~~----------~-- 248 (491)
+++.+...+........ ...|||.++|...| .+++.. .......+.+.|+||++.++= .
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 99999988885544333 44689999998765 122211 122245688999999996541 1
Q ss_pred ----CcHHHHHHHHhhcCCC--------CceE------------------------------------------------
Q 011188 249 ----GFEPQIKKILSQIRPD--------RQTL------------------------------------------------ 268 (491)
Q Consensus 249 ----~~~~~~~~i~~~~~~~--------~~~i------------------------------------------------ 268 (491)
.....+..++..+... .+.+
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1123333333222211 1112
Q ss_pred -------------------------------------------------------------EeccCCcHHHHHHHHHHcc
Q 011188 269 -------------------------------------------------------------YWSATWPKEVEHLARQYLY 287 (491)
Q Consensus 269 -------------------------------------------------------------~~SAT~~~~~~~~~~~~~~ 287 (491)
+||.|...+..++...|..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 2222222222222222221
Q ss_pred CCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 011188 288 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 366 (491)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~ 366 (491)
+.+.+....+-. ... ...........|+..+++.+.. +..+.|+||-+.+.+..+.+.+.|++.+++...++..-.
T Consensus 388 ~vv~iPTnrp~~--R~D-~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 388 DVVVIPTNRPII--RLD-EPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred ceeeccCCCccc--CCC-CccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 111111111100 000 0111123345677777766665 456779999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeccccccCCCCCCC-----------EEEEcCCCCChhHHHHhhhhcccCCCcceEEEEe
Q 011188 367 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK-----------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 435 (491)
Q Consensus 367 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~-----------~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 435 (491)
..+-..+...-+. --|-|||+++++|-||.--. +||-...-.|..--.|-.||+||.|..|.+-.|+
T Consensus 465 ~~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 465 AREAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 5554444443222 24889999999999984211 4666666666666779999999999999888777
Q ss_pred Cccc
Q 011188 436 TAAN 439 (491)
Q Consensus 436 ~~~~ 439 (491)
+-.|
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 7544
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.42 E-value=2.6e-12 Score=123.47 Aligned_cols=154 Identities=20% Similarity=0.191 Sum_probs=93.5
Q ss_pred HHHHHHHHhhc-------------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 112 IQAQGWPMALK-------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 112 ~Q~~~i~~i~~-------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
+|.+++.+++. .+.+|++.++|+|||+.++. ++..+..... ......+|||||. .+..||.++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 58888887642 35699999999999988655 4444443210 1112359999999 888999999
Q ss_pred HHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHH-----HHHhccCccccCccEEEEccccccccCCcHHH
Q 011188 179 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQ 253 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~-----~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~ 253 (491)
+.++.....+++..+.+...............+++|+|++.+. .... .+...++++||+||+|.+.+.. ..
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTTT--SH
T ss_pred hccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEeccccccccc--cc
Confidence 9999865456666665554122222222345789999999997 1111 1111348999999999986543 23
Q ss_pred HHHHHhhcCCCCceEEeccCC
Q 011188 254 IKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 254 ~~~i~~~~~~~~~~i~~SAT~ 274 (491)
....+..+. ....+++|||+
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-
T ss_pred ccccccccc-cceEEeecccc
Confidence 333444454 66789999996
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.37 E-value=2.2e-12 Score=104.81 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
|+-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++... +++.. . . .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~~----~~~~t--~-~-~--- 65 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGLP----VRFHT--N-A-R--- 65 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTSS----EEEES--T-T-S---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcCC----cccCc--e-e-e---
Confidence 4557888999999998756655655554 37889999999999998888886532 22211 0 0 0
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc--CCCCceEEeccCCcHHHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVE 279 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~ 279 (491)
......+..|-++|+..+.+++.+ .....++++||+||||-. |.. .-.....+..+ .....+|++|||+|....
T Consensus 66 ~~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 66 MRTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAESGEAKVIFMTATPPGSED 141 (148)
T ss_dssp S----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHHTTS-EEEEEESS-TT---
T ss_pred eccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHH-HHhhheeHHHhhhccCeeEEEEeCCCCCCCC
Confidence 012234567899999999888776 555789999999999953 211 11111222222 234579999999987543
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.34 E-value=1.6e-10 Score=125.44 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=159.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
+..+|+.-||||||++... +...+... ...+.++||+.++.|-.|+.+++..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4599999999999988544 44444443 3588999999999999999999999875533211 222333334
Q ss_pred HHhhcC-CcEEEeChHHHHHHHhccC--ccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHH
Q 011188 204 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 280 (491)
Q Consensus 204 ~~~~~~-~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 280 (491)
+.+... ..|+|||.++|-..+.... ..-.+=-+||+||||+--. +..-..+...+ ++...++||+|+-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 444433 4899999999977775531 1112223799999998542 33333333334 347789999997322211
Q ss_pred H-HHHHccCCcEEEecCCCcccccceeeeeecc------------------------Ch-------------------hh
Q 011188 281 L-ARQYLYNPYKVIIGSPDLKANHAIRQHVDIV------------------------SE-------------------SQ 316 (491)
Q Consensus 281 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-------------------~~ 316 (491)
. ....++..+..............+...+... .. ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 1 1222333322222111111100000000000 00 00
Q ss_pred H----HHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhCCCc-----------------------eEEEcCCCCHH
Q 011188 317 K----YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWP-----------------------ALSIHGDKSQA 368 (491)
Q Consensus 317 k----~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-----------------------~~~i~~~~~~~ 368 (491)
+ ...+.+.... ...+.++++.+.++..+..+.+.+...... ....|... ..
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HH
Confidence 0 0001111111 112346777777777444444333221000 00001111 22
Q ss_pred HHHHHHHH--HhCCCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC
Q 011188 369 ERDWVLSE--FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 369 ~r~~~~~~--f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
.+.....+ ......++||.++++-+|+|-|.++++. +|-|.-.-..+|.+-|+.|.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 33344444 3456789999999999999999887775 56667778899999999995
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=9.4e-11 Score=112.82 Aligned_cols=344 Identities=20% Similarity=0.219 Sum_probs=219.5
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEE-cCCCChH--HHHHHHHHHHHhhcCCC---------CC--------------CCCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLAYLLPAIVHVNAQPF---------LA--------------PGDG 159 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~-~~TGsGK--T~~~~~~~l~~l~~~~~---------~~--------------~~~~ 159 (491)
-.++++.|.+.+..+.+.+|++.. ...+.|+ +-+|++.+++|+.+... .. .-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357999999999999999997654 3334555 46788889988854211 00 0125
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCc-eE--------EEEECCcc--------ChhhHH------------------
Q 011188 160 PIVLVLAPTRELAVQIQQESTKFGASSKI-KS--------TCIYGGVP--------KGPQVR------------------ 204 (491)
Q Consensus 160 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~-~v--------~~~~~g~~--------~~~~~~------------------ 204 (491)
|+||||||+|+-|..+.+.+..+....+- +. ..-++|.. .....+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 88999999999999999998876333221 11 01111100 000000
Q ss_pred -------HhhcCCcEEEeChHHHHHHHhc------cCccccCccEEEEccccccccCCcHHHHHHHHhhc---CCC----
Q 011188 205 -------DLQKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RPD---- 264 (491)
Q Consensus 205 -------~~~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~---~~~---- 264 (491)
.-....||+||+|=-|.-.+.. ....++.+.++|||-+|.++...| ..+..++..+ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 0112358999999887555552 123478899999999998876553 3333444333 211
Q ss_pred -----------------CceEEeccCCcHHHHHHHHHHccCCcEEEecCCCc------ccccceeeeee---c----cCh
Q 011188 265 -----------------RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL------KANHAIRQHVD---I----VSE 314 (491)
Q Consensus 265 -----------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~----~~~ 314 (491)
+|+++||+--.+....+...++.+..-.+....-. .....+.|.+. . ...
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 48888888877777777777765532222111100 01111122111 1 112
Q ss_pred hhHHHHHHHHH-Hhhcc--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc-
Q 011188 315 SQKYNKLVKLL-EDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV- 390 (491)
Q Consensus 315 ~~k~~~l~~~l-~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 390 (491)
..++..+...+ -.+.+ ..-+||+.|+.-.--.+..++++..+....+|.-.+...-..+-+.|-.|...||+-|.-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 33444443322 12211 125899999999999999999998888888888888777777888899999999999965
Q ss_pred -ccccCCCCCCCEEEEcCCCCChhHHH---HhhhhcccCCC----cceEEEEeCcccHHHHHHHHHHH
Q 011188 391 -AARGLDVKDVKYVINYDFPGSLEDYV---HRIGRTGRAGA----KGTAYTFFTAANARFAKELITIL 450 (491)
Q Consensus 391 -~~~Gidi~~~~~VI~~~~p~s~~~~~---Qr~GR~gR~g~----~g~~~~~~~~~~~~~~~~l~~~l 450 (491)
.-+-.+|.++..||+|.+|.+|.-|. -+.+|+.-.|+ .-.|.+++++-|.-.+..++-..
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 45788999999999999999986655 45555443332 23788899998877776665543
No 167
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.27 E-value=5.8e-11 Score=120.53 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=183.0
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-----hcCCCC
Q 011188 113 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-----FGASSK 187 (491)
Q Consensus 113 Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-----~~~~~~ 187 (491)
-...+..+..+.-+++.+.||+|||..+.--+|....++... --.-+.+.-|++-.+.-+++.+.+ .+...+
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g---~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG---ASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc---ccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 344445555667789999999999998877778777765321 123356677888666666665543 222222
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCc
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQ 266 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~ 266 (491)
..+- ....--...--|.+||.+.+++.+++... .+.++|+||.|...-. .|...+.+-+....++..
T Consensus 460 y~vR---------f~Sa~prpyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 460 YNVR---------FDSATPRPYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred cccc---------ccccccccccceeeeccchhhhhhhhccc---ccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 1110 00000011236999999999998887543 5778999999964322 233333332333345566
Q ss_pred eEEeccCCcHH--------------------HHHHHHHHccCCcEEEecCCCccccccee-----------eeeecc---
Q 011188 267 TLYWSATWPKE--------------------VEHLARQYLYNPYKVIIGSPDLKANHAIR-----------QHVDIV--- 312 (491)
Q Consensus 267 ~i~~SAT~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--- 312 (491)
++++|||+..+ +..+....+..+................. ......
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd 607 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP 607 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh
Confidence 67777775433 12222222222211111110000000000 000000
Q ss_pred -------------Chh----hHHHHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhC-------CCceEEEcCCCCHH
Q 011188 313 -------------SES----QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQA 368 (491)
Q Consensus 313 -------------~~~----~k~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~i~~~~~~~ 368 (491)
.+. .-.+.+...+....-.+-++||.+--...-.|+..|... .++....|+.....
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 000 111111111111112346999999888888887777432 45778889999988
Q ss_pred HHHHHHHHHhCCCCcEEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhhhcccCCCcce
Q 011188 369 ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGT 430 (491)
Q Consensus 369 ~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~ 430 (491)
+..++.+....|..++++.|.+++..+.+.++..||+-+. -.|....+||.||+||. +.|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 9899999989999999999999999999988887774432 22677889999999998 7888
Q ss_pred EEEEeCc
Q 011188 431 AYTFFTA 437 (491)
Q Consensus 431 ~~~~~~~ 437 (491)
|+.+.+.
T Consensus 767 ~f~lcs~ 773 (1282)
T KOG0921|consen 767 CFHLCSR 773 (1282)
T ss_pred cccccHH
Confidence 8877663
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.4e-10 Score=109.53 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 108 EPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
+|+|.|.+.+. .+..++++++.+|||+|||++++.|++.++...... ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455788999999999999999999999887653210 02347999999999998887777665
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.4e-10 Score=109.53 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 108 EPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
+|+|.|.+.+. .+..++++++.+|||+|||++++.|++.++...... ..+.+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455788999999999999999999999887653210 02347999999999998887777665
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.09 E-value=2e-09 Score=98.90 Aligned_cols=128 Identities=25% Similarity=0.283 Sum_probs=95.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|++.|.-++-.+..|+ |+...||-|||++..+|++.+.+. |..|-|++.+..||.+=++++..+...+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 488889988887776554 999999999999998888777776 7789999999999999999999999999
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHH-HHhcc----C--ccccCccEEEEccccccc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID-MLESH----N--TNLRRVTYLVLDEADRML 246 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~-~l~~~----~--~~l~~~~~lIiDEah~~~ 246 (491)
++++..+..+.+...... ...++|+++|...+.- ++... . .....+.++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~--~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERRE--AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHH--HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHH--HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999998876533322 3346899999988743 34321 1 124678999999999765
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.02 E-value=4.7e-08 Score=98.35 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=96.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCc------------------eEEEcCCCCHHHHHHHHHHHhCCC---CcEEEEec
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMDGWP------------------ALSIHGDKSQAERDWVLSEFKAGK---SPIMTATD 389 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~~~~------------------~~~i~~~~~~~~r~~~~~~f~~g~---~~vLvaT~ 389 (491)
+.++|||.......+.+.+.|.+..++ ...+.|..+..+|++.+++|+... .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 458999999999999999999764322 236788889999999999998642 24788999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHH
Q 011188 390 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 447 (491)
Q Consensus 390 ~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 447 (491)
+..-|||+-..+.+|.||.-|++..-.|.+.|+-|.|++..|+++-.-.|...-++|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999876655544444443
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.87 E-value=2.3e-08 Score=103.64 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhhcc-C-CeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCC-c-EEEEeccc
Q 011188 316 QKYNKLVKLLEDIMD-G-SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS-P-IMTATDVA 391 (491)
Q Consensus 316 ~k~~~l~~~l~~~~~-~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~-~-vLvaT~~~ 391 (491)
.++..+...+..... . .+++||++-...+..+...|...++....+.|.|+...|.+.+..|..+.. . .+++..+.
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag 601 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAG 601 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHh
Confidence 344445555543211 1 389999999999999999999888999999999999999999999995532 3 45567999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCCCcceEEE
Q 011188 392 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 433 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 433 (491)
..|+|+-.+.+|+..|+-||+....|.+-|+.|.|+.-.+.+
T Consensus 602 ~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 602 KVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999999999999999999998866554
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.82 E-value=1.4e-07 Score=100.16 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 209 GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 209 ~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
...|+++||..|..-+..+.+++.++..|||||||++....-...+.++...-++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 358999999999888888899999999999999999987666667777777777788899999984
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=4e-09 Score=109.50 Aligned_cols=260 Identities=20% Similarity=0.202 Sum_probs=159.1
Q ss_pred CCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 108 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
...|.|.+.+..... ..++++-+|||+|||++|.+++...+...| +.++++++|-.+|+..-.+.+.+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 445566665554443 457899999999999999998887776654 6789999999999887777777544444
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc--cCccccCccEEEEccccccccCCcHHHHHHHHhhc---
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--- 261 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~--- 261 (491)
++++..+.|+...+.. . ....+++|+||++......+ ....+.+++.+|+||.|.+.+. +++.++.+....
T Consensus 1001 g~k~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 8889988888766521 2 23469999999998776653 3445788999999999976553 344444443322
Q ss_pred ----CCCCceEEeccCCcHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccC-------hhhHHHHHHHHHHhhcc
Q 011188 262 ----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-------ESQKYNKLVKLLEDIMD 330 (491)
Q Consensus 262 ----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~l~~~l~~~~~ 330 (491)
.+..+.+++| |......+++.++...+. +. ...........-.+...+ ...+..-....++...+
T Consensus 1077 s~~t~~~vr~~gls-ta~~na~dla~wl~~~~~-~n--f~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLS-TALANANDLADWLNIKDM-YN--FRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHh-hhhhccHHHHHHhCCCCc-CC--CCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 2334555554 333334556555544433 11 111111122222222111 12233345566777778
Q ss_pred CCeEEEEeCCcccH----HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCc
Q 011188 331 GSRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 383 (491)
Q Consensus 331 ~~~~lVf~~~~~~~----~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~ 383 (491)
..+++||+.+++.. ..+...+....-+...++.+ ..+-+.++..-++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 88999999887654 34433333333344455544 55666666665554443
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.76 E-value=1.6e-06 Score=89.09 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccC--CCcceEE-----------EEeCcccHHHHHHH
Q 011188 380 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA--GAKGTAY-----------TFFTAANARFAKEL 446 (491)
Q Consensus 380 g~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~--g~~g~~~-----------~~~~~~~~~~~~~l 446 (491)
...+++++-.++-+|+|=|+|=.++-+....|..+=.|-+||..|- .+.|.-+ +++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999993 3334322 45666778888877
Q ss_pred HHHHHH
Q 011188 447 ITILEE 452 (491)
Q Consensus 447 ~~~l~~ 452 (491)
.+-+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 765543
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.74 E-value=1.6e-07 Score=99.78 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=59.1
Q ss_pred CCcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhcccCC--Ccc--------eEEEEeCcccHHHHHHHHHHH
Q 011188 381 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKG--------TAYTFFTAANARFAKELITIL 450 (491)
Q Consensus 381 ~~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~g--------~~~~~~~~~~~~~~~~l~~~l 450 (491)
..+++++-+++.+|+|.|++-.++-+....|...-.|.+||..|.- +.| .-.++.+.....++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998899999999999999942 222 123455667788899988877
Q ss_pred HHh
Q 011188 451 EEA 453 (491)
Q Consensus 451 ~~~ 453 (491)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 664
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.67 E-value=6.1e-07 Score=82.84 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=108.7
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCC
Q 011188 89 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 158 (491)
Q Consensus 89 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~----------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 158 (491)
-.+.||+.++.. -.+...|.+++-.+.+ ...+++-..||.||--...-.++..... .
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------G 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------G 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------C
Confidence 345678766542 2578889999866542 3458888999999986544445555554 1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhcc---Cccc----
Q 011188 159 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL---- 231 (491)
Q Consensus 159 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l---- 231 (491)
.++.|+++.+..|-....+.++.++.. .+.+..+..-. ... ...-...|+++|+..|...-.+. ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cCc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 456899999999999999999988754 34444333211 110 01224479999999987764321 1111
Q ss_pred ----cCc-cEEEEccccccccCCc--------HHHHHHHHhhcCCCCceEEeccCCcHH
Q 011188 232 ----RRV-TYLVLDEADRMLDMGF--------EPQIKKILSQIRPDRQTLYWSATWPKE 277 (491)
Q Consensus 232 ----~~~-~~lIiDEah~~~~~~~--------~~~~~~i~~~~~~~~~~i~~SAT~~~~ 277 (491)
.++ .+|||||||.+.+..- ...+..+...+ ++.+++.+|||.-.+
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgase 223 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASE 223 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCC
Confidence 223 4899999998876532 12334444555 455699999996443
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.63 E-value=2.2e-07 Score=82.83 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 108 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
+|++-|.+++..++... -.++.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhhC-----
Confidence 47889999999997554 377889999999986 3435555444 26789999999988777655521
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC----ccccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
+ -..|..+++....... ..+...++|||||+-.+. ...+..++...
T Consensus 68 --~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 1 1122222211111111 114567899999999765 56677777777
Q ss_pred CC-CCceEEeccC
Q 011188 262 RP-DRQTLYWSAT 273 (491)
Q Consensus 262 ~~-~~~~i~~SAT 273 (491)
+. ..++|++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 66 5666666544
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.60 E-value=3.7e-07 Score=84.22 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCC-CCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
++++.|.+|+..++.... .++.||+|+|||.+.. .++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 9999999999996533 3444442100 00122478899999999999998888877
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.60 E-value=3.9e-07 Score=80.54 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=75.0
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
...++.|..++.+++..+-+++.+|.|||||+.++..++..+... .-.+++++-|..+.... +.-+-...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~----lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGED----LGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT--------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccc----cccCCCCH
Confidence 456889999999999888899999999999999888888777652 35678888887643111 11000000
Q ss_pred CceEEE----EE---CCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHh
Q 011188 187 KIKSTC----IY---GGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 259 (491)
Q Consensus 187 ~~~v~~----~~---~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~ 259 (491)
.-+... ++ ...........+.....|-+..+..+ ....+. -.+||+|||+.+. ..+++.++.
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i------RGrt~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI------RGRTFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG------TT--B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh------cCcccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 000000 00 00001111222233345555554332 122232 3799999999875 778899999
Q ss_pred hcCCCCceEEeccC
Q 011188 260 QIRPDRQTLYWSAT 273 (491)
Q Consensus 260 ~~~~~~~~i~~SAT 273 (491)
++..+.+++++--.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888888876544
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.57 E-value=2.3e-07 Score=80.49 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec--cccccCCCCC--CCEEE
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVI 404 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gidi~~--~~~VI 404 (491)
++.+|||+++.+.++.+.+.++.... ....+.. ...++..+++.|++++-.||+++. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 36899999999999999999986531 1122222 245778899999999999999998 9999999996 77899
Q ss_pred EcCCCCC------------------------------hhHHHHhhhhcccCCCcceEEEEeCcc
Q 011188 405 NYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 438 (491)
Q Consensus 405 ~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 438 (491)
...+|.. .....|.+||+-|..++--++++++..
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 8888751 233458899999997665555566653
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.50 E-value=3e-06 Score=84.59 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=66.7
Q ss_pred HHHHCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 100 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 100 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
.+...++.+|+.-|..|+.++++..-.||++|+|+|||.+..- ++.++.++ ....+|+++|+.--+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 4445677899999999999999999999999999999977444 55565553 2566999999998889998888
Q ss_pred HHhcCCCCceEEEEE
Q 011188 180 TKFGASSKIKSTCIY 194 (491)
Q Consensus 180 ~~~~~~~~~~v~~~~ 194 (491)
.+.+ ++|+.+.
T Consensus 475 h~tg----LKVvRl~ 485 (935)
T KOG1802|consen 475 HKTG----LKVVRLC 485 (935)
T ss_pred HhcC----ceEeeee
Confidence 7754 6665544
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.45 E-value=3.4e-06 Score=75.21 Aligned_cols=128 Identities=20% Similarity=0.357 Sum_probs=86.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 87 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 87 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
+|+....|++++-.+.. -.-+|+.|.+....+.+ +++.+.+.-+|.|||.+ ++|++..+..+. ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 56666678887766642 34799999999998886 57899999999999987 888888887642 34566
Q ss_pred EEcccHHHHHHHHHHHHH-hcCCCCceEEEE--ECCccChh----hH----HHhhcCCcEEEeChHHHHHHH
Q 011188 164 VLAPTRELAVQIQQESTK-FGASSKIKSTCI--YGGVPKGP----QV----RDLQKGVEIVIATPGRLIDML 224 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~-~~~~~~~~v~~~--~~g~~~~~----~~----~~~~~~~~Iiv~T~~~l~~~l 224 (491)
+++|. +|..|..+.+.. ++.-.+-.+..+ .-...... .. +.......|+++||+.++.+.
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 67774 799999888884 443333333222 22222211 11 122334579999999986653
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.34 E-value=9.3e-05 Score=77.81 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 107 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
..+++.|.+|+..++.. ..+++.+|+|+|||.+..- ++.++... +.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVKR-------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999998876 5688999999999976443 44444432 568999999998888888888763
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.27 E-value=1.6e-05 Score=72.40 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=82.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH-----------
Q 011188 104 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA----------- 172 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~----------- 172 (491)
.++...+..|...+.++.++..+++.+|+|+|||+.++..++..+... .-.+++|.-|+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 345567889999999999888899999999999998776666555432 134466665654321
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCccChhhHHHh-h-cCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc
Q 011188 173 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 250 (491)
Q Consensus 173 ~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~-~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~ 250 (491)
+-+..++..+.+.+.. +.+. .....+ . ....|-|.....+ . ...+ +-++||+|||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~ym----R--Grtl-~~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFAYM----R--GRTF-ENAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHHHh----c--CCcc-cCCEEEEechhcCC----
Confidence 1111222211111100 0010 111111 1 1224555543222 2 1223 33799999999875
Q ss_pred HHHHHHHHhhcCCCCceEEec
Q 011188 251 EPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 251 ~~~~~~i~~~~~~~~~~i~~S 271 (491)
..++..++..+..+.++|+.-
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEeC
Confidence 578888888888777766543
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.18 E-value=8.6e-05 Score=72.81 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
-++|.+..|||||++++- ++..+. ....+..++++++...|...+.+.+.+-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 378889999999987544 444441 1123677899999999998888877653200
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-------cHHHHHHHHhh
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 260 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-------~~~~~~~i~~~ 260 (491)
......+..+..+...+.........+++|||||||++.... ....+..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233344444444333223345689999999999998732 23566666665
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.17 E-value=2.7e-05 Score=83.03 Aligned_cols=127 Identities=20% Similarity=0.140 Sum_probs=80.5
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
-..+++.|.+|+..+..++-+++.++.|+|||++. -.++..+... +....+++++||-.-|.++.+..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc------
Confidence 35899999999999998889999999999999863 3344444331 01256888999977665443321
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc-----cCccccCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-----~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
+.. -.|..+++.+... ........++||+|||+.+. ...+..+++.
T Consensus 389 -g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 110 0122222111000 00112357899999999764 4456777777
Q ss_pred cCCCCceEEeccC
Q 011188 261 IRPDRQTLYWSAT 273 (491)
Q Consensus 261 ~~~~~~~i~~SAT 273 (491)
++...++|++--+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8878888876644
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.17 E-value=2.7e-05 Score=80.64 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 011188 110 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 189 (491)
Q Consensus 110 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 189 (491)
.++|..|+..++.++-+++.++.|+|||++. ..++..+..... .....++++++||-.-|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999863 224443332110 0113579999999887777777665533221110
Q ss_pred EEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc------cCccccCccEEEEccccccccCCcHHHHHHHHhhcCC
Q 011188 190 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 263 (491)
Q Consensus 190 v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~ 263 (491)
. .......+-..|..+|+..... ...+...+++||||||-.+- ...+..+++.+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444332211 11223468999999999654 5567788888888
Q ss_pred CCceEEeccC
Q 011188 264 DRQTLYWSAT 273 (491)
Q Consensus 264 ~~~~i~~SAT 273 (491)
..++|++--.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888877644
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.16 E-value=2.1e-05 Score=81.60 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=89.2
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
..++|++|+...+.++-++|.+++|+|||++.. .++..+.... .....++++++||-.-|..+.+.+.......++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 358999999999999999999999999997632 2333333210 112457899999998888888777653322211
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc------cCccccCccEEEEccccccccCCcHHHHHHHHhhcC
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 262 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~ 262 (491)
. . ........-..|..+|+..... ...+.-.+++|||||+-.+- ...+..+++.++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 0 0 0001111123444444322111 11223356899999999653 566778888888
Q ss_pred CCCceEEeccC
Q 011188 263 PDRQTLYWSAT 273 (491)
Q Consensus 263 ~~~~~i~~SAT 273 (491)
+..++|++--.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888877654
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.11 E-value=1.4e-05 Score=79.42 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
.+.+-|..|+....+.++ .++.+|+|+|||.+... ++..+..+ +.++||++||..-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 678889999999998866 77889999999988555 44444442 7899999999988888877543
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=97.97 E-value=4.3e-05 Score=56.27 Aligned_cols=60 Identities=32% Similarity=0.334 Sum_probs=39.9
Q ss_pred HHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 116 GWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 116 ~i~~i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
++...+++. -+++.+|.|||||...+-.+ .++.... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i-~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARI-AELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHH-HHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 444334434 46669999999997644433 3333210 112 668999999999999888887
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.97 E-value=5.1e-05 Score=78.62 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCC---C-------C-------C----------
Q 011188 107 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQP---F-------L-------A---------- 155 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~-------~-------~---------- 155 (491)
.+|++.|...+..++ ...+.++..|||+|||++.+-..|.+..... . . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 378999998887665 4578999999999999875544443332111 0 0 0
Q ss_pred --C-----CCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 156 --P-----GDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 156 --~-----~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
. ..-|++.+-+-|..-..|+.+++++.+..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 01366777777878888999999887544
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.89 E-value=0.00023 Score=76.27 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 107 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..+++-|.+|+..++.+ +-+++.++.|+|||++ +-++...+.. .+..+++++||---+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 47899999999998874 5688999999999975 3333333333 267899999997655444321
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 264 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~ 264 (491)
.++.. .|..++...+......+...++|||||+-.+.. ..+..++... ...
T Consensus 416 ~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAG 467 (744)
T ss_pred cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 11111 122222221222233456789999999997653 3344555432 345
Q ss_pred CceEEec
Q 011188 265 RQTLYWS 271 (491)
Q Consensus 265 ~~~i~~S 271 (491)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6666665
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.87 E-value=9.1e-05 Score=77.53 Aligned_cols=146 Identities=21% Similarity=0.145 Sum_probs=89.0
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCC
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 160 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 160 (491)
|+.+..-....+.+.+.+. -...++.-|++|+..++..+| .+|.+-+|+|||..... +++-+.. .++
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCC
Confidence 3333333344455555553 234789999999999888776 77889999999976433 3333333 378
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh-----------------HHHhhcCCcEEEeChHHHHHH
Q 011188 161 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ-----------------VRDLQKGVEIVIATPGRLIDM 223 (491)
Q Consensus 161 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~-----------------~~~~~~~~~Iiv~T~~~l~~~ 223 (491)
+||+.+=|..-+..+.-.+..+. +.+..+-.+....+. ....-+.+.|+.+|.--+.+-
T Consensus 715 kVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 89999988776666666665543 222222111111111 223334567888885333222
Q ss_pred HhccCccccCccEEEEcccccccc
Q 011188 224 LESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 224 l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
.+..+.|+++|+|||-.+..
T Consensus 791 ----lf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 791 ----LFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ----hhhccccCEEEEcccccccc
Confidence 23356799999999998764
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.83 E-value=0.00033 Score=76.30 Aligned_cols=124 Identities=23% Similarity=0.150 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 107 FEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..+++-|.+|+..++.+++ +++.+..|+|||++ +-++...+.. .+..|+.++||---+..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 4799999999999998654 78889999999986 3334333332 26789999999755443322 1
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 264 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~ 264 (491)
.++. -.|..+|..........+...++|||||+-.+. ...+..++... +..
T Consensus 410 tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 1111 113333322222223345677899999999664 34555666543 456
Q ss_pred CceEEeccC
Q 011188 265 RQTLYWSAT 273 (491)
Q Consensus 265 ~~~i~~SAT 273 (491)
.++|++--+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 677766654
No 196
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.82 E-value=0.00015 Score=74.14 Aligned_cols=82 Identities=23% Similarity=0.439 Sum_probs=63.0
Q ss_pred HHHHhCCCCcEEEEeccccccCCCCCCC--------EEEEcCCCCChhHHHHhhhhcccCCCc-ceEEEEeCc---ccHH
Q 011188 374 LSEFKAGKSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTA---ANAR 441 (491)
Q Consensus 374 ~~~f~~g~~~vLvaT~~~~~Gidi~~~~--------~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~---~~~~ 441 (491)
-++|.+|+..|-|-+.+++-||.+..=+ +-|-+.+|||....+|..||++|..+- +--|+|+.. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 3578899999999999999999986533 446788999999999999999998763 555555543 3677
Q ss_pred HHHHHHHHHHHhCC
Q 011188 442 FAKELITILEEAGQ 455 (491)
Q Consensus 442 ~~~~l~~~l~~~~~ 455 (491)
++.-+.+-|+..+.
T Consensus 930 FAS~VAKRLESLGA 943 (1300)
T KOG1513|consen 930 FASIVAKRLESLGA 943 (1300)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777777766543
No 197
>PRK04296 thymidine kinase; Provisional
Probab=97.79 E-value=7.5e-05 Score=66.26 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=57.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCccCh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKG 200 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~ 200 (491)
.-.++.+|+|+|||+.++- ++..+.. .+.+++++-|. +... ..+....++...
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~-------~g~~v~i~k~~~d~~~~~-------~~i~~~lg~~~~--------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEE-------RGMKVLVFKPAIDDRYGE-------GKVVSRIGLSRE--------- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHH-------cCCeEEEEeccccccccC-------CcEecCCCCccc---------
Confidence 3468899999999987554 3333332 26678888663 2111 111111111110
Q ss_pred hhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 201 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 201 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
.+.+.....+.+.+.. .-.++++||+||+|.+. ..++..++..+.+....+.+++-
T Consensus 59 ----------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ----------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ----------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 1223444555555443 23468899999998653 33455566654433344444443
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.78 E-value=0.00018 Score=60.05 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=53.4
Q ss_pred EcCCCCHHHHHHHHHHHhCCC-CcEEEEeccccccCCCCC--CCEEEEcCCCC---------------------------
Q 011188 361 IHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD--VKYVINYDFPG--------------------------- 410 (491)
Q Consensus 361 i~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gidi~~--~~~VI~~~~p~--------------------------- 410 (491)
+..+.+..+...+++.|+... ..||+++.-+++|||+|+ ++.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 334445556788889998654 369999977999999997 67888777664
Q ss_pred ----ChhHHHHhhhhcccCCCcceEEEEeC
Q 011188 411 ----SLEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 411 ----s~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
......|.+||+-|...+--++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 12345588999999866544444444
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.71 E-value=0.00018 Score=60.26 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCC---ceEEEcCCCCHHHHHHHHHHHhCCCC---cEEEEecc--ccccCCCCC--CCEEEEcCCCCC--
Q 011188 344 CDQITRQLRMDGW---PALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDV--AARGLDVKD--VKYVINYDFPGS-- 411 (491)
Q Consensus 344 ~~~l~~~L~~~~~---~~~~i~~~~~~~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gidi~~--~~~VI~~~~p~s-- 411 (491)
++.+++.++..+. ....+.-.....+...+++.|++..- .||+++.- +++|||+|+ ++.||...+|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455555554432 11222222223344678888886543 58888866 999999997 678888877641
Q ss_pred -----------------------------hhHHHHhhhhcccCCCcceEEEEeC
Q 011188 412 -----------------------------LEDYVHRIGRTGRAGAKGTAYTFFT 436 (491)
Q Consensus 412 -----------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~ 436 (491)
.....|.+||+-|..++--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 2334588999999866544455544
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.66 E-value=0.0011 Score=72.78 Aligned_cols=124 Identities=19% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 107 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
..|++-|.+++..+.. ++-+++.++.|+|||++ +-++...+.. .+..++.++||-.-+..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e~------- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEKE------- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHHh-------
Confidence 4799999999998865 44588899999999986 3334443333 377899999996555443321
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC-CC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PD 264 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-~~ 264 (491)
.++.. .|..++..........+..-++|||||+..+. ...+..++.... ..
T Consensus 445 ~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 11111 22222211111222345567799999999654 455566666654 46
Q ss_pred CceEEeccC
Q 011188 265 RQTLYWSAT 273 (491)
Q Consensus 265 ~~~i~~SAT 273 (491)
.++|++--+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 677776655
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.64 E-value=0.0043 Score=73.26 Aligned_cols=237 Identities=12% Similarity=0.157 Sum_probs=129.6
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 108 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.++..+.. .+..|++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 6899999999998876 4588899999999975 3334433333 377899999998766655544321100
Q ss_pred CCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCC
Q 011188 186 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 264 (491)
Q Consensus 186 ~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~ 264 (491)
........+.. ..-..|...|. .....+..-++||||||-.+. ...+..++... +.+
T Consensus 500 ------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 00011111111 11122323332 222334567899999999765 45666677655 467
Q ss_pred CceEEeccCC------cHHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhc-cCCeEEEE
Q 011188 265 RQTLYWSATW------PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIF 337 (491)
Q Consensus 265 ~~~i~~SAT~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVf 337 (491)
.++|++--+- +..+..++..... +.. ...... .....+ .+.......+...+.+.+..+. ...+++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv-~t~-~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGV-TTY-AWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCC-cEE-Eeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 7888777652 1233333333221 111 111110 111111 1222233445556666555554 33469999
Q ss_pred eCCcccHHHHHHHHHh----CC------CceEEEc-CCCCHHHHHHHHHHHhCCC
Q 011188 338 MDTKKGCDQITRQLRM----DG------WPALSIH-GDKSQAERDWVLSEFKAGK 381 (491)
Q Consensus 338 ~~~~~~~~~l~~~L~~----~~------~~~~~i~-~~~~~~~r~~~~~~f~~g~ 381 (491)
..+..+...|...++. .| .....+. ..++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9999998888877753 22 2222332 35666666633 5565553
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.64 E-value=0.00036 Score=65.69 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCCCCcHHHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 104 AGFFEPTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 104 ~~~~~~~~~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
.|+...+..|.-|+..++...- +.+.++.|||||+.++.+.+.+....+ .-.+++|.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCccccc------
Confidence 4676777889999999887643 778899999999998888888887643 244577777775543221
Q ss_pred hcCCCCceEEEEECCc--cChhhHHHhhcCCc----EEEeChHHHHHHHhccCccccC----------ccEEEEcccccc
Q 011188 182 FGASSKIKSTCIYGGV--PKGPQVRDLQKGVE----IVIATPGRLIDMLESHNTNLRR----------VTYLVLDEADRM 245 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~--~~~~~~~~~~~~~~----Iiv~T~~~l~~~l~~~~~~l~~----------~~~lIiDEah~~ 245 (491)
+ -+-|.. ....+...+.++-. .-=++.+.+...+.+..+.+.. =.+||+|||+.+
T Consensus 293 -G--------fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 293 -G--------FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred -C--------cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 0 000000 00011111111000 1112233444444433322111 157999999987
Q ss_pred ccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 246 LDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
- ..+++.++.+.-+..+++++.
T Consensus 364 T----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcC
Confidence 5 778999999998888877654
No 203
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.62 E-value=5.3e-06 Score=85.38 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhC---CCCcEEEEecc
Q 011188 315 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDV 390 (491)
Q Consensus 315 ~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~---g~~~vLvaT~~ 390 (491)
..|...|..+++.+. .+.+|+||.......+.+...+...+ ....+.|.....+|+.++++|+. ....+|.+|.+
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 456666666666654 45699999999999999999999888 88999999999999999999994 35568899987
Q ss_pred cccc
Q 011188 391 AARG 394 (491)
Q Consensus 391 ~~~G 394 (491)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 7654
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0017 Score=63.65 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=85.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCccChh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~-Pt-~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~ 201 (491)
..+++++|||+|||++..-.+ .++... ....+.+|.+++ .+ |.-+ .++++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~---~~~~g~~V~lit~Dt~R~aa---~eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGIN---SDDKSLNIKIITIDNYRIGA---KKQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhh---hccCCCeEEEEeccCccHHH---HHHHHHHhhcCCcceE----------
Confidence 358889999999998754422 222211 001244454443 33 2222 2224555544444321
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCC-CceEEeccCCc-HHH
Q 011188 202 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPD-RQTLYWSATWP-KEV 278 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SAT~~-~~~ 278 (491)
++-++..+...+.. +.++++|++|++.+..... ....+..++....+. ..++.+|||.. .++
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 12234444444433 3578999999999876322 123555555555433 45688999985 344
Q ss_pred HHHHHHHccC-CcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCC
Q 011188 279 EHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 340 (491)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~ 340 (491)
.+....+..- +..+ .+...++..+...++.++... +.|+..++..
T Consensus 303 ~~~~~~~~~~~~~~~---------------I~TKlDet~~~G~~l~~~~~~--~~Pi~yit~G 348 (388)
T PRK12723 303 KEIFHQFSPFSYKTV---------------IFTKLDETTCVGNLISLIYEM--RKEVSYVTDG 348 (388)
T ss_pred HHHHHHhcCCCCCEE---------------EEEeccCCCcchHHHHHHHHH--CCCEEEEeCC
Confidence 4555554321 1111 222344455566666666553 2345444443
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.58 E-value=0.00035 Score=64.59 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=64.1
Q ss_pred HHHHHHhCCCCcEEEEeccccccCCCCC--------CCEEEEcCCCCChhHHHHhhhhcccCCCc-ceEEEEeCcc---c
Q 011188 372 WVLSEFKAGKSPIMTATDVAARGLDVKD--------VKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---N 439 (491)
Q Consensus 372 ~~~~~f~~g~~~vLvaT~~~~~Gidi~~--------~~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~~---~ 439 (491)
...+.|.+|+.+|+|.+++++.||.+.. -++.|.+.+|||....+|..||++|.++. .-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999999863 34678899999999999999999999885 4445544432 5
Q ss_pred HHHHHHHHHHHHHhC
Q 011188 440 ARFAKELITILEEAG 454 (491)
Q Consensus 440 ~~~~~~l~~~l~~~~ 454 (491)
.+++..+.+-|+..+
T Consensus 132 ~Rfas~va~rL~sLg 146 (278)
T PF13871_consen 132 RRFASTVARRLESLG 146 (278)
T ss_pred HHHHHHHHHHHhhcc
Confidence 566666655555443
No 206
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00031 Score=65.06 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=59.5
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCc
Q 011188 118 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 197 (491)
Q Consensus 118 ~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~ 197 (491)
.++..++++++.||+|+|||..+.. +...+.. .+.+++++..+ +|..++....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~~-------~g~~v~f~t~~-~l~~~l~~~~------------------ 145 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG-LGIRACQ-------AGHRVLFATAA-QWVARLAAAH------------------ 145 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH-HHHHHHH-------CCCchhhhhHH-HHHHHHHHHH------------------
Confidence 4455678999999999999976444 3333332 14556554332 3443332110
Q ss_pred cChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc-HHHHHHHHhhcCCCCceEEeccCCcH
Q 011188 198 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPDRQTLYWSATWPK 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~ 276 (491)
.. .+.. ..+.. +.++++|||||+|....... ...+..++........+|+.|...+.
T Consensus 146 ---------~~------~~~~---~~l~~----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 146 ---------HA------GRLQ---AELVK----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred ---------hc------CcHH---HHHHH----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 00 1111 11111 34578999999997653221 23345555443334567777776544
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.0013 Score=65.67 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=73.9
Q ss_pred EEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh-cCCCCceEEEEECCccCh----hh
Q 011188 128 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIKSTCIYGGVPKG----PQ 202 (491)
Q Consensus 128 i~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~-~~~~~~~v~~~~~g~~~~----~~ 202 (491)
..++||||||++..-.++ ++.... -...|+.|....+.+-...-+..- ....=..-.+.+++.... ..
T Consensus 2 f~matgsgkt~~ma~lil-~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 357899999987544333 444321 223566666555544433222210 000000001111111110 00
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCc------cccCcc-EEEEccccccccCC---------cHHHHHHHH---hhcCC
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNT------NLRRVT-YLVLDEADRMLDMG---------FEPQIKKIL---SQIRP 263 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~------~l~~~~-~lIiDEah~~~~~~---------~~~~~~~i~---~~~~~ 263 (491)
.........|+++|.+.|...+.+..- ++.+.. +++-||||++.... -...++..+ ....+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 111344578999999999877654322 244444 46779999976432 111222222 12235
Q ss_pred CCceEEeccCCcHHHHHHHHHH
Q 011188 264 DRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 264 ~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
+.-++.+|||.|. .......|
T Consensus 155 d~~~lef~at~~k-~k~v~~ky 175 (812)
T COG3421 155 DNLLLEFSATIPK-EKSVEDKY 175 (812)
T ss_pred CceeehhhhcCCc-cccHHHHh
Confidence 6667889999984 33444443
No 208
>PRK08181 transposase; Validated
Probab=97.45 E-value=0.0025 Score=59.47 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=65.7
Q ss_pred CcHHHHHHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 109 PTPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 109 ~~~~Q~~~i----~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
+.+.|..++ .++..++++++.||+|+|||..+.. +...+.. .+..|+++. ..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~-------~g~~v~f~~-~~~L~~~l~~a~~~--- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE-------NGWRVLFTR-TTDLVQKLQVARRE--- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH-------cCCceeeee-HHHHHHHHHHHHhC---
Confidence 344555555 2445778999999999999965333 3444433 145565554 45565554322100
Q ss_pred CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc-HHHHHHHHhhcCC
Q 011188 185 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRP 263 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~-~~~~~~i~~~~~~ 263 (491)
.+...++.. +.++++||+||.+....... ...+-.++.....
T Consensus 156 ------------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~ 198 (269)
T PRK08181 156 ------------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE 198 (269)
T ss_pred ------------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 111122222 34678999999997654332 2345566655444
Q ss_pred CCceEEeccCCcH
Q 011188 264 DRQTLYWSATWPK 276 (491)
Q Consensus 264 ~~~~i~~SAT~~~ 276 (491)
...+|+.|-..+.
T Consensus 199 ~~s~IiTSN~~~~ 211 (269)
T PRK08181 199 RRSILITANQPFG 211 (269)
T ss_pred CCCEEEEcCCCHH
Confidence 4566665555443
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.43 E-value=0.0031 Score=61.01 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=94.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
++.+.++||||.|||++..-.+..+.+.. .+....||-..|--.. -.++++.++..+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 56789999999999987544333333121 1233445555553332 3455666655544433
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCc-HHHHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 280 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 280 (491)
.++-+|.-|...+.. +.++++|.||=+=+-... .....+..++....+..-.+.+|||.. .++.+
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 344556556554443 556788999988753322 234556666665555556688899974 45566
Q ss_pred HHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcc
Q 011188 281 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 342 (491)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~ 342 (491)
....|..-++.- ..+...++...+..++.++.+. +.|+.-+++...
T Consensus 331 i~~~f~~~~i~~--------------~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~ 376 (407)
T COG1419 331 IIKQFSLFPIDG--------------LIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQR 376 (407)
T ss_pred HHHHhccCCcce--------------eEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCC
Confidence 666665433321 1122233444455666666553 335555555443
No 210
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.41 E-value=0.00046 Score=66.63 Aligned_cols=123 Identities=20% Similarity=0.082 Sum_probs=74.9
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 188 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 188 (491)
+++-|.+++.. ..++++|.|..|||||.+.+.-++..+.... ....++|++++|+..+..+.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57789999988 6788999999999999986654444444321 23556999999999999999998875432110
Q ss_pred eEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccc--cCccEEEEcccc
Q 011188 189 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEAD 243 (491)
Q Consensus 189 ~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l--~~~~~lIiDEah 243 (491)
.. ...............+.|.|...+...+.+..... -.-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00001112222335789999988766443321111 123456777776
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.0021 Score=61.90 Aligned_cols=130 Identities=21% Similarity=0.284 Sum_probs=74.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCccChh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~ 201 (491)
-+++++++|+|||++..- +...+.. .+.+++++... ..-..|+......++ +.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~---- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGA---- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCC----
Confidence 477889999999986443 2233333 24566666543 344455555444433 3332111111
Q ss_pred hHHHhhcCCcEEEeChHH-HHHHHhccCccccCccEEEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHH
Q 011188 202 QVRDLQKGVEIVIATPGR-LIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 279 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~-l~~~l~~~~~~l~~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 279 (491)
.|.. +.+.+... ....+++|++|.+.++.. ......+..+.....++..++.++||...+..
T Consensus 206 --------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 --------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 11222211 123567999999998763 33456777777777788888999999877666
Q ss_pred HHHHHHc
Q 011188 280 HLARQYL 286 (491)
Q Consensus 280 ~~~~~~~ 286 (491)
..++.+.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666554
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.36 E-value=0.00067 Score=56.08 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
++.+++.|++|+|||.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999986433
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0052 Score=59.66 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=86.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc-c-H-HHHHHHHHHHHHhcCCCCceEEEEECCccCh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T-R-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 200 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P-t-~-~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~ 200 (491)
+.+++++|||+|||+.....+ ..+.. .+.++.++.. + | .-+.|+.. +....++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~-------~GkkVglI~aDt~RiaAvEQLk~----yae~lgi------------ 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGF------------ 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCcEEEEecCCcchHHHHHHHH----HhhhcCC------------
Confidence 457899999999998654423 33332 2445555443 2 2 23344433 3222222
Q ss_pred hhHHHhhcCCcEE-EeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCCCceEEeccCCc-HH
Q 011188 201 PQVRDLQKGVEIV-IATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 277 (491)
Q Consensus 201 ~~~~~~~~~~~Ii-v~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~ 277 (491)
+++ +.+|..+.+.+..... ..++++|++|-+=+..... .-..+..++....+..-++.+|||.. ++
T Consensus 298 ----------pv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 298 ----------EVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ----------cEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 232 3456666655543211 1257899999997655321 23444555555555555677898764 45
Q ss_pred HHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCC
Q 011188 278 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 340 (491)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~ 340 (491)
....++.|-.-++. .-.+...++..+...++.+.... +.|+..++..
T Consensus 367 ~~~i~~~F~~~~id--------------glI~TKLDET~k~G~iLni~~~~--~lPIsyit~G 413 (436)
T PRK11889 367 MIEIITNFKDIHID--------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDG 413 (436)
T ss_pred HHHHHHHhcCCCCC--------------EEEEEcccCCCCccHHHHHHHHH--CcCEEEEeCC
Confidence 56666665421111 11222334444566666666653 3355555443
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0018 Score=63.04 Aligned_cols=132 Identities=19% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
+..+++++|||+|||+.....+....... ...++.+++. ...-.--.+.++.++...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~------G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~----------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF------GASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH----------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEec-ccccccHHHHHHHHHHHcCCceE-----------
Confidence 45789999999999987554333222221 1134444432 22211122334444433333322
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCCCceEEeccCCcHH-HHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKE-VEH 280 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~ 280 (491)
.+.+++.+...+.. +.+.++|+||++=+..... ....+..+.....+...++.+|||.... +.+
T Consensus 199 ----------~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 199 ----------AVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------ecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 22333333333322 3466899999997543221 1223333222222344578889998543 344
Q ss_pred HHHHHc
Q 011188 281 LARQYL 286 (491)
Q Consensus 281 ~~~~~~ 286 (491)
..+.|.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 555553
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.32 E-value=0.0027 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
++.+++.||+|+|||..+.. +...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHh
Confidence 56799999999999975333 44443
No 216
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.27 E-value=0.0014 Score=60.36 Aligned_cols=60 Identities=8% Similarity=0.207 Sum_probs=39.7
Q ss_pred ccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC---cHHHHHHHHHHccCC
Q 011188 229 TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW---PKEVEHLARQYLYNP 289 (491)
Q Consensus 229 ~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~---~~~~~~~~~~~~~~~ 289 (491)
.....++++|+||||.|.... ...+.+.+...+....+++.+--+ +..+..-+..|...+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 345678999999999988654 456677777776677777776554 344444444444433
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.19 E-value=0.00075 Score=59.96 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=35.7
Q ss_pred cCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
+++++|+||-+-+.... .....+..++....+..-.+.+|||...+.......+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 35789999999765432 2345667777777777778899999866544444433
No 218
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.18 E-value=0.0036 Score=61.54 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=58.6
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCC-------ceEEEcCCCCHHHHHHHHHHHh----CCCCcEEEE--eccccccCCCCC
Q 011188 333 RILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQAERDWVLSEFK----AGKSPIMTA--TDVAARGLDVKD 399 (491)
Q Consensus 333 ~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~i~~~~~~~~r~~~~~~f~----~g~~~vLva--T~~~~~Gidi~~ 399 (491)
-+++|..+.-..+.++......|+ +...+ +.-+..+-..++..++ +|.-.||++ -.-.++|+|+.+
T Consensus 532 G~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~h 610 (755)
T KOG1131|consen 532 GIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDH 610 (755)
T ss_pred ceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccccc
Confidence 367787777777777666654432 22233 2222333334444443 455556654 477899999987
Q ss_pred CC--EEEEcCCCC------------------------------ChhHHHHhhhhcccCCCc
Q 011188 400 VK--YVINYDFPG------------------------------SLEDYVHRIGRTGRAGAK 428 (491)
Q Consensus 400 ~~--~VI~~~~p~------------------------------s~~~~~Qr~GR~gR~g~~ 428 (491)
.. .||.+..|. -...-.|..||+.|..++
T Consensus 611 hyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~d 671 (755)
T KOG1131|consen 611 HYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTD 671 (755)
T ss_pred ccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhcccc
Confidence 55 899888886 123344889999998444
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.011 Score=54.43 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=58.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
..+++.+++|+|||..+. ++..++... +..++++ +..+|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~~---~------------------ 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIMSAMKDTFSN---S------------------ 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHhh---c------------------
Confidence 469999999999997633 355555542 5556555 334444333332210 0
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHH-HHHHHHhhcC-CCCceEEeccCCcH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQIR-PDRQTLYWSATWPK 276 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~-~~~~i~~~~~-~~~~~i~~SAT~~~ 276 (491)
+ .+.+.+.+. +.++++|||||++......+.. .+..|+.... ....+++.|---+.
T Consensus 150 -------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 150 -------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred -------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 0 122222222 3468899999999876544443 3445555432 34566666654333
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.0014 Score=54.64 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
+..+++.+|+|+|||..... ++..+... ...++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEc
Confidence 45789999999999986333 33332221 134677776643
No 221
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.08 E-value=0.0019 Score=59.45 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=39.6
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcC
Q 011188 79 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ 151 (491)
Q Consensus 79 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~ 151 (491)
..+|..+.+|+++++|+-+.+.+ ...+. +++.+|||||||++ +.+++.++..+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~-------------------~~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELA-------------------ESPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHH-------------------hCCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 35788888999999888776522 12222 78889999999987 66688888775
No 222
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.07 E-value=0.047 Score=55.94 Aligned_cols=210 Identities=15% Similarity=0.265 Sum_probs=119.6
Q ss_pred ccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHccC-CcEEEe------cCCCc-------
Q 011188 234 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVII------GSPDL------- 299 (491)
Q Consensus 234 ~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~------~~~~~------- 299 (491)
++++.+|-|.++ ..++... +-+++..+|+.+ +.++...++.. +..+.. ..++.
T Consensus 527 lky~lL~pA~~f---------~evv~ea---ravvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHF---------AEVVLEA---RAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHH---------HHHHHHh---heeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeeec
Confidence 566777666652 2333332 347888999865 55666655542 111100 00000
Q ss_pred --ccccceeeeeeccChhhHHHHHHHHHHhh---ccCCeEEEEeCCcccHHHHHHHHHhCCC-------ceEEEcCCCCH
Q 011188 300 --KANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQ 367 (491)
Q Consensus 300 --~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~i~~~~~~ 367 (491)
.....+...+..-....-+..|...+..+ .++ -+++|+++.+....+.+.+...|+ +...+-..-+
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPg-GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPG-GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCC-cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc-
Confidence 01111222222223344444554444433 344 599999999999999988876543 2222222222
Q ss_pred HHHHHHHHHHh----CCCCcEEEEe--ccccccCCCCC--CCEEEEcCCCCC----------------------------
Q 011188 368 AERDWVLSEFK----AGKSPIMTAT--DVAARGLDVKD--VKYVINYDFPGS---------------------------- 411 (491)
Q Consensus 368 ~~r~~~~~~f~----~g~~~vLvaT--~~~~~Gidi~~--~~~VI~~~~p~s---------------------------- 411 (491)
-..+++.|. .|.-.+|+|. .-+++|||+.+ .++||..++|..
T Consensus 672 --~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~y 749 (821)
T KOG1133|consen 672 --VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELY 749 (821)
T ss_pred --HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHH
Confidence 234555554 4555688776 77899999976 778888887751
Q ss_pred ----hhHHHHhhhhcccCCCcceEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhccCCCC
Q 011188 412 ----LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 470 (491)
Q Consensus 412 ----~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 470 (491)
+....|.||||-|.-++--++++++. ++++...+ .+|.|+.+......+
T Consensus 750 EnlCMkAVNQsIGRAIRH~~DYA~i~LlD~---RY~~p~~R-------KLp~WI~~~v~s~~~ 802 (821)
T KOG1133|consen 750 ENLCMKAVNQSIGRAIRHRKDYASIYLLDK---RYARPLSR-------KLPKWIRKRVHSKAG 802 (821)
T ss_pred HHHHHHHHHHHHHHHHhhhccceeEEEehh---hhcCchhh-------hccHHHHhHhccccC
Confidence 22345999999999666566666654 23322222 678998766665533
No 223
>PRK06921 hypothetical protein; Provisional
Probab=97.06 E-value=0.015 Score=54.42 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
.+.++++.+++|+|||..+ .+++..+... .+..++++.. .++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEEH-HHHHHH
Confidence 3567999999999999753 3355555441 1455666554 344443
No 224
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.03 E-value=0.0021 Score=69.54 Aligned_cols=149 Identities=17% Similarity=0.066 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCC----------CCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPF----------LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 192 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~----------~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~ 192 (491)
|+++++...+|.|||..-+...+..+..... ........+|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 5678899999999998755544433221110 011123458999997 78899999999987554 66665
Q ss_pred EECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC--------------cc----cc--CccEEEEccccccccCCcHH
Q 011188 193 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--------------TN----LR--RVTYLVLDEADRMLDMGFEP 252 (491)
Q Consensus 193 ~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--------------~~----l~--~~~~lIiDEah~~~~~~~~~ 252 (491)
..|=.........-.-.+|||++|+..|..-+.... .+ +- .+--|++|||+.+... ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 555322111111222358999999999976554321 01 11 1234899999976552 45
Q ss_pred HHHHHHhhcCCCCceEEeccCCcH
Q 011188 253 QIKKILSQIRPDRQTLYWSATWPK 276 (491)
Q Consensus 253 ~~~~i~~~~~~~~~~i~~SAT~~~ 276 (491)
...+.+..++ ....-.+|+|+-.
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq 552 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQ 552 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchh
Confidence 5556666653 4456788999643
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.01 E-value=0.036 Score=55.53 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCccC
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 199 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~~~~~vlil~-Pt-~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~ 199 (491)
++.+++.+|||+|||++....+.... .. .+.+|.++. .+ +.-+ .+++..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 45688899999999976544233222 12 144555554 22 2111 133333332222222
Q ss_pred hhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhh-cCCCCceEEeccCCcH-
Q 011188 200 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQ-IRPDRQTLYWSATWPK- 276 (491)
Q Consensus 200 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~-~~~~~~~i~~SAT~~~- 276 (491)
..+.++..+...+.. +.++++||||.+-+.... .....+..++.. ..+....+.+|||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 122344445444443 336799999998754322 123445555552 2234457888998753
Q ss_pred HHHHHHHHHc
Q 011188 277 EVEHLARQYL 286 (491)
Q Consensus 277 ~~~~~~~~~~ 286 (491)
++.+....|-
T Consensus 346 ~l~~~~~~f~ 355 (424)
T PRK05703 346 DLKDIYKHFS 355 (424)
T ss_pred HHHHHHHHhC
Confidence 4555555553
No 226
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.95 E-value=0.003 Score=62.18 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCcHHHHHHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 108 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 108 ~~~~~Q~~~i~~i------~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
+|++-|++++..+ .++..+++.++-|+|||+. +-.+...+.. .+..+++++||-.=|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l-~~~i~~~~~~-------~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL-IKAIIDYLRS-------RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH-HHHHHHHhcc-------ccceEEEecchHHHHH
Confidence 3678899998888 5677899999999999985 2223333332 3677999999964443
No 227
>PRK08116 hypothetical protein; Validated
Probab=96.86 E-value=0.019 Score=53.86 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=58.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
..+++.|++|+|||..+. ++...+..+ +..++++ +..+|...+...+.... .
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~~~~~~~~---------------~---- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIKSTYKSSG---------------K---- 166 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHHHHHhccc---------------c----
Confidence 349999999999997633 466666552 3445544 44556554444332100 0
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhc-CCCCceEEeccCCcHHH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEV 278 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 278 (491)
.+...+.+. +.+.++|||||++...... ....+..++... ....++|+.|-..+.++
T Consensus 167 -----------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 167 -----------EDENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred -----------ccHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 011112121 3456799999996432222 133445555543 34456666666555544
No 228
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.0068 Score=58.47 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHhhcCC----cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 108 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~----~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.++|||...+..+.... -+++.+|.|.|||..+.. +...+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 45899999999887543 388999999999976544 4455544
No 229
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.80 E-value=0.006 Score=53.86 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+++.+|+|+|||...+--+...+.. +..+++++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEECC-CCHHHHHHHHHHcC
Confidence 6889999999997654433333322 6668888654 55667777776664
No 230
>PRK12377 putative replication protein; Provisional
Probab=96.79 E-value=0.009 Score=55.03 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
.++++.+++|+|||..+ .++...+... +..|+++ +..+|..++...+.. .
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~~~~~---~------------------ 151 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLHESYDN---G------------------ 151 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHHHHHhc---c------------------
Confidence 57999999999999753 3355555542 4445444 445666655443311 0
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc-HHHHHHHHhhcC-CCCceEEeccC
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSAT 273 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~-~~~~~~i~~~~~-~~~~~i~~SAT 273 (491)
.+...+++. +.++++||+||++......+ ...+..++.... ...++++.|--
T Consensus 152 -----------~~~~~~l~~-------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 152 -----------QSGEKFLQE-------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred -----------chHHHHHHH-------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001111121 45788999999965433322 234445555543 34566665543
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=96.77 E-value=0.013 Score=60.31 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=84.2
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|.|+|...+..+..++-.++..+=..|||.+....++..+... .+..+++++|+..-|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 378999999998876666677888899999987665444444432 25689999999998888887776543221
Q ss_pred C--ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCC-
Q 011188 187 K--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP- 263 (491)
Q Consensus 187 ~--~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~- 263 (491)
. +....... ......+.++..|.+.|.+. ....-..++++|+||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 1 01000000 00011113444554444211 111122567899999997754 23333444333332
Q ss_pred -CCceEEeccCC
Q 011188 264 -DRQTLYWSATW 274 (491)
Q Consensus 264 -~~~~i~~SAT~ 274 (491)
..+++.+|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555443
No 232
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.72 E-value=0.016 Score=66.13 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHH--HHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 011188 108 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYL--LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 175 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~--~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 175 (491)
.+++-|.+|+..++.. +-++|.+..|+|||++.- +.++..+.+ ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 7999999999999965 568999999999998632 222222222 1356788999997655544
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=96.71 E-value=0.0073 Score=55.48 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=28.4
Q ss_pred CccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcH
Q 011188 233 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK 276 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 276 (491)
+++++|+|++|.+... .+...+-.++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5678999999977543 2345566677666554445666666543
No 234
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.70 E-value=0.0097 Score=64.27 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|++-|.+++.. ....++|.|..|||||.+..- =+.++.... ......+|+|+-|+.-|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~-Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTH-RIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 3689999999865 346799999999999988444 444554421 1124569999999999999999998864210
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccC---ccccCccEEEEccccc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADR 244 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~---~~l~~~~~lIiDEah~ 244 (491)
...+.|+|...+...+.+.. ..+ .-.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 12577899888765433211 111 112456787653
No 235
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.67 E-value=0.025 Score=65.48 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 107 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
..+++.|.+|+..++.. +-++|.+..|+|||++. -.++..+... ....+..++.++||-.-+.++. +.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~----e~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR----SA-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHHH----hc--
Confidence 47899999999999975 45889999999999863 2233332210 1113567889999976554433 21
Q ss_pred CCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHh----ccCccccCccEEEEccccccccCCcHHHHHHHHhh
Q 011188 185 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE----SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 260 (491)
Q Consensus 185 ~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~----~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~ 260 (491)
++.. .|..+|+.... ........-++|||||+-.+. ...+..++..
T Consensus 1036 --Gi~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~ 1085 (1747)
T PRK13709 1036 --GVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYAL 1085 (1747)
T ss_pred --Ccch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHh
Confidence 1111 22222222110 111112245799999999665 3445555555
Q ss_pred cCC-CCceEEeccC
Q 011188 261 IRP-DRQTLYWSAT 273 (491)
Q Consensus 261 ~~~-~~~~i~~SAT 273 (491)
++. ..++|++--+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 543 5677766655
No 236
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.67 E-value=0.0091 Score=64.45 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|+|-|.+++... ...++|.|..|||||.+..- -+.++.... ......+|+|+-|+..|..+.+.+.++....
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~-Ria~Li~~~---~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVH-RIAWLMQVE---NASPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHcC---CCChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 36899999998753 46799999999999988444 344544321 1124569999999999999999998864210
Q ss_pred CceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCc---cccCccEEEEcccc
Q 011188 187 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT---NLRRVTYLVLDEAD 243 (491)
Q Consensus 187 ~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~---~l~~~~~lIiDEah 243 (491)
...+.|+|...+...+.+... .+ .-.+-|+|+.+
T Consensus 82 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d 118 (721)
T PRK11773 82 ----------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDD 118 (721)
T ss_pred ----------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHH
Confidence 024678888887654332211 11 12245677765
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.65 E-value=0.017 Score=49.48 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
+++.+++|+|||..+.. ++..+.. .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcc
Confidence 67899999999986443 3333322 2556777765443
No 238
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.63 E-value=0.0015 Score=56.48 Aligned_cols=123 Identities=22% Similarity=0.217 Sum_probs=53.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHHh
Q 011188 127 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 206 (491)
Q Consensus 127 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~ 206 (491)
++.|+-|-|||.+.-+ ++..+... ...+++|.+|+.+-++.+.+.+..-....+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl-~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGL-AAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHH-CCCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHH-HHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 5789999999986444 33333321 12579999999988777776665544333332200000 00000111
Q ss_pred hcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 207 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 207 ~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
..+..|-+..|+.+... ....+++|||||=.+. .+.+..++... ..++||.|.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeec
Confidence 22456777777666321 1245889999999875 56666665433 356677775
No 239
>PRK08727 hypothetical protein; Validated
Probab=96.62 E-value=0.016 Score=53.15 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=26.2
Q ss_pred cCccEEEEccccccccCC-cHHHHHHHHhhcC-CCCceEEeccCCcHHH
Q 011188 232 RRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 278 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 278 (491)
.+.++||+||+|.+.... ....+-.++.... ...++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 356789999999876433 2223334444433 2344555555555443
No 240
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.23 Score=50.55 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=62.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCccC
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 199 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~-Pt-~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~ 199 (491)
.++.+.+++|||+|||+.+...+....... .+.++.++. .+ +.-+ .+++..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccH---HHHHHHhhcccCceeEe-------
Confidence 456788899999999986544222222221 123344443 22 3222 22333433333322211
Q ss_pred hhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCCCceEEeccCCc-HH
Q 011188 200 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 277 (491)
Q Consensus 200 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~ 277 (491)
+.++..+...+.. +.++++||||.+=...... ....+..+.. ......++.++++.. .+
T Consensus 413 --------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhH
Confidence 1233344444443 3468899999997643221 1122322222 223445677777764 34
Q ss_pred HHHHHHHH
Q 011188 278 VEHLARQY 285 (491)
Q Consensus 278 ~~~~~~~~ 285 (491)
..+..+.+
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 44555544
No 241
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.60 E-value=0.0059 Score=55.87 Aligned_cols=87 Identities=28% Similarity=0.361 Sum_probs=64.5
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCc-cChhhHHHhhc-CCcEEEeChHHHHHHHhccCccccCc
Q 011188 157 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRV 234 (491)
Q Consensus 157 ~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~-~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~ 234 (491)
...|.+||||.+---|..+.+.++.|... +..|.-++.-. ...++...+.. ..+|.|+||+++..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 34788999999887788888888877311 12333333332 34455555553 68999999999999999999999999
Q ss_pred cEEEEccccc
Q 011188 235 TYLVLDEADR 244 (491)
Q Consensus 235 ~~lIiDEah~ 244 (491)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998874
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.016 Score=55.78 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=58.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~ 201 (491)
.+.++++.|+||+|||..+ .++...+.. .+..|+++. ..+|..++... .+... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~-------~g~~V~y~t-~~~l~~~l~~~--~~~~~-------------~-- 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD-------RGKSVIYRT-ADELIEILREI--RFNND-------------K-- 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH-------CCCeEEEEE-HHHHHHHHHHH--Hhccc-------------h--
Confidence 3578999999999999753 335555554 255666554 34565544331 11000 0
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc-HHHHHHHHhhcC-CCCceEEeccCCcHHH
Q 011188 202 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIR-PDRQTLYWSATWPKEV 278 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~-~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 278 (491)
. ....+ ..+.++++||+|+.+......+ ...+-.++.... ...++|+.|--.+.+.
T Consensus 236 ~-----------------~~~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 236 E-----------------LEEVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred h-----------------HHHHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 0 00001 1134678999999987654433 234555555443 3455665554444443
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.57 E-value=0.018 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~ 142 (491)
....+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999976443
No 244
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.015 Score=55.74 Aligned_cols=143 Identities=20% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHhhc----CC---cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 107 FEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~----~~---~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
..++|||..++..+.+ ++ -+++.+|.|+||+..+.. +...+...... ..+ .|+... .+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~--~~~-----~c~~c~-------~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPD--PAA-----AQRTRQ-------LI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCC--CCC-----cchHHH-------HH
Confidence 5689999999987653 33 489999999999976444 55555543211 001 122211 11
Q ss_pred HHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHh
Q 011188 180 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 259 (491)
Q Consensus 180 ~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~ 259 (491)
.-+...++.++....+.... .....|.|-....+.+.+.... .....+++|||+||.|.... ...+.++++
T Consensus 68 -~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLE 138 (319)
T PRK08769 68 -AAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLE 138 (319)
T ss_pred -hcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhh
Confidence 11223333332111110000 0001233333333333333222 23467899999999987543 455666777
Q ss_pred hcCCCCceEEeccC
Q 011188 260 QIRPDRQTLYWSAT 273 (491)
Q Consensus 260 ~~~~~~~~i~~SAT 273 (491)
.-+++..+|++|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 76666666666654
No 245
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.55 E-value=0.011 Score=62.67 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 186 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 186 (491)
..|++-|.+|+-. ...+++|.|..|||||.+.+- -+.++.... ...+..+|+++.++..|..+.+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~-r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVA-RAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHH-HHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4799999999864 345689999999999988444 444444321 1234579999999999999999887644333
Q ss_pred CceE
Q 011188 187 KIKS 190 (491)
Q Consensus 187 ~~~v 190 (491)
++.+
T Consensus 269 ~v~v 272 (684)
T PRK11054 269 DITA 272 (684)
T ss_pred CcEE
Confidence 3433
No 246
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.036 Score=58.87 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=67.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
+-+.+++|||+|||+++...+......+ .+.++.++.....-+ -..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRI-GALEQLRIYGRILGVPV------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccch-HHHHHHHHHHHhCCCCc-------------
Confidence 3478899999999987554332222221 123454444322110 01233343433333222
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCCCceEEeccCCc-HHHHHH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KEVEHL 281 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 281 (491)
.++.+|..+.+.+.. +.+.++|+||=+=+..... ....+..+.....+...++.++||.. +.+.++
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 123366666555543 3456889999888654321 23333444444445667788888874 334455
Q ss_pred HHHHc
Q 011188 282 ARQYL 286 (491)
Q Consensus 282 ~~~~~ 286 (491)
.+.|.
T Consensus 314 ~~~f~ 318 (767)
T PRK14723 314 VHAYR 318 (767)
T ss_pred HHHHh
Confidence 55553
No 247
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.53 E-value=0.0031 Score=71.00 Aligned_cols=93 Identities=26% Similarity=0.345 Sum_probs=76.6
Q ss_pred eEEEEeCCcccHHHHHHHHHhCC-CceEEEcCCCC-----------HHHHHHHHHHHhCCCCcEEEEeccccccCCCCCC
Q 011188 333 RILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKS-----------QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 400 (491)
Q Consensus 333 ~~lVf~~~~~~~~~l~~~L~~~~-~~~~~i~~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~Gidi~~~ 400 (491)
..++||+.+..+..+.+.++... +.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 47899999999999988887642 23333444332 2236688999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhhhcccC
Q 011188 401 KYVINYDFPGSLEDYVHRIGRTGRA 425 (491)
Q Consensus 401 ~~VI~~~~p~s~~~~~Qr~GR~gR~ 425 (491)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998665
No 248
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.52 E-value=0.013 Score=62.50 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|++-|.+++... ...++|.|..|||||.+... -+.++.... .....++|+|+-|+.-|..+.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITN-KIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998753 46788999999999988444 444444321 1124569999999999999999998764
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.0092 Score=54.66 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=28.4
Q ss_pred cCccEEEEccccccccC-CcHHHHHHHHhhcCC-CCceEEeccCCcH
Q 011188 232 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPK 276 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 276 (491)
.+.+++|+||+|.+... .+...+..++..... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 46789999999987633 233445555555543 3456677777644
No 250
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.1 Score=48.73 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=88.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc-cH--HHHHHHHHHHHHhcCCCCceEEEEECCcc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TR--ELAVQIQQESTKFGASSKIKSTCIYGGVP 198 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P-t~--~L~~q~~~~~~~~~~~~~~~v~~~~~g~~ 198 (491)
.+..+++.+++|+|||..+...+ ..+.. .+..+.++.. +. ..+.||....... ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~-~~l~~-------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~---------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GF---------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCeEEEEecCCCCHHHHHHHHHHhhhc----Cc----------
Confidence 34578999999999998765533 22222 1344544443 22 4555555433322 22
Q ss_pred ChhhHHHhhcCCcEEE-eChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCC-c
Q 011188 199 KGPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATW-P 275 (491)
Q Consensus 199 ~~~~~~~~~~~~~Iiv-~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~-~ 275 (491)
++.. .++..+.+.+..- ....+++++|+|.+=+.... .....+..++....+...++.+|||. .
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 2222 3455554444321 11236789999999775432 12344455555555555567799986 4
Q ss_pred HHHHHHHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCC
Q 011188 276 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT 340 (491)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~ 340 (491)
.+..+.++.|-.-++ . .-.+...++..+...++.+.... +.|+..++..
T Consensus 199 ~d~~~~~~~f~~~~~-----------~---~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~G 247 (270)
T PRK06731 199 KDMIEIITNFKDIHI-----------D---GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDG 247 (270)
T ss_pred HHHHHHHHHhCCCCC-----------C---EEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCC
Confidence 566677776642111 0 11222334445566666666653 3355555543
No 251
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.50 E-value=0.012 Score=54.05 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
...+++.||+|+|||..... +...+.. .+.+++++.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~-------~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ-------RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh-------CCCeEEEEEH
Confidence 35799999999999975332 3333332 1455666544
No 252
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.50 E-value=0.028 Score=56.76 Aligned_cols=93 Identities=23% Similarity=0.172 Sum_probs=60.0
Q ss_pred CCCCHH-HHHHHHHCCCCCCcH----HHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEE
Q 011188 91 VGFPDY-VMQEISKAGFFEPTP----IQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 163 (491)
Q Consensus 91 ~~l~~~-~~~~l~~~~~~~~~~----~Q~~~i~~i~~--~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 163 (491)
.+..++ ++..|+++.-.+++. +|.+-=..|.. ++-+++++..|||||.+++--+...+..... .-.+..||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--~l~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--PLQAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc--ccccCceE
Confidence 344444 455666665555554 34444444554 3458999999999999977655544444321 12234499
Q ss_pred EEcccHHHHHHHHHHHHHhcCC
Q 011188 164 VLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 164 il~Pt~~L~~q~~~~~~~~~~~ 185 (491)
|+.|.+.+..-+.+.+=+++..
T Consensus 265 vl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EEcCcHHHHHHHHHhchhhccC
Confidence 9999999988888888777643
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.028 Score=52.18 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
.++.++++.|++|+|||..+.. +...+.. .+..| +++++.+|+.++...+..
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~A-i~~~l~~-------~g~sv-~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIA-IGNELLK-------AGISV-LFITAPDLLSKLKAAFDE 154 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHH-HHHHHHH-------cCCeE-EEEEHHHHHHHHHHHHhc
Confidence 3678999999999999986443 4444443 14555 455566787776665543
No 254
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.39 E-value=0.017 Score=61.75 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=70.9
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccccc
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARG 394 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~G 394 (491)
.+..++.....+.+++|.+||+.-|...++.+++ .++++..+||+++..+|..++....+|+.+|+|+|. .+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3444555555677999999999999888777764 368899999999999999999999999999999995 46667
Q ss_pred CCCCCCCEEEE
Q 011188 395 LDVKDVKYVIN 405 (491)
Q Consensus 395 idi~~~~~VI~ 405 (491)
+.+.++.+||.
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 78888888884
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=96.39 E-value=0.057 Score=50.38 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=28.6
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
+..+.++++.+|+|+|||..+... ...+.. .+..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al-~~~a~~-------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL-GYEAVR-------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH-HHHHHH-------cCCeEEEEe-HHHHHHH
Confidence 556889999999999999754432 222222 255666654 3345443
No 256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.0097 Score=57.18 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=23.2
Q ss_pred cEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCc
Q 011188 235 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 275 (491)
Q Consensus 235 ~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 275 (491)
.++++||+|++.. .+-..++..+ .+-.++++-||-.
T Consensus 106 tiLflDEIHRfnK----~QQD~lLp~v-E~G~iilIGATTE 141 (436)
T COG2256 106 TILFLDEIHRFNK----AQQDALLPHV-ENGTIILIGATTE 141 (436)
T ss_pred eEEEEehhhhcCh----hhhhhhhhhh-cCCeEEEEeccCC
Confidence 4799999999753 3333444444 3455788888843
No 257
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.34 E-value=0.032 Score=54.40 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.0
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
...++||+||+|.+... ....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987543 2345556666665555555543
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.34 E-value=0.022 Score=52.09 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=26.1
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCc-eEEeccCCcH
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ-TLYWSATWPK 276 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~-~i~~SAT~~~ 276 (491)
..++||+||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 45689999999875432 3445555554443333 4667776543
No 259
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.33 E-value=0.027 Score=59.18 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=85.6
Q ss_pred HHHCCCCCCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 011188 101 ISKAGFFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 178 (491)
Q Consensus 101 l~~~~~~~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 178 (491)
+.....+....-|.+.+..++..+ -+++.|+-|=|||.+.-+.+. .+.... ....++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 333334445555555666666654 488889999999987665542 222210 035799999999988888777
Q ss_pred HHHhcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 179 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 179 ~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
+.+-....+++-.+....... ......+...|=+-+|.... ..-+++|||||=-+. .+.+.+++
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~ 344 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLL 344 (758)
T ss_pred HHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHH
Confidence 766444444332221111000 00000112234455554331 115789999998775 66777777
Q ss_pred hhcCCCCceEEeccCC
Q 011188 259 SQIRPDRQTLYWSATW 274 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT~ 274 (491)
...+ .++||.|+
T Consensus 345 ~~~~----rv~~sTTI 356 (758)
T COG1444 345 RRFP----RVLFSTTI 356 (758)
T ss_pred hhcC----ceEEEeee
Confidence 6543 57888885
No 260
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.32 E-value=0.035 Score=56.44 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=57.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
..+++.||+|+|||... .++...+..+. .+..++++.. .++..++...+..-
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-----PNAKVVYVTS-EKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHHcC---------------------
Confidence 35899999999999753 33555554421 1455666644 45554443333210
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhc-CCCCceEEeccCCcHHHH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVE 279 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 279 (491)
+.+.+... +.++++||+||+|.+.... ....+-.++..+ ....++++.|...|..+.
T Consensus 201 ------------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ------------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ------------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 11222221 2357799999999876532 122333444333 234555555544444443
No 261
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.018 Score=62.36 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.4
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+++++||||+|.|.... ...|.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 578899999999987544 345556666666666666555
No 262
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.32 E-value=0.014 Score=57.96 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHH
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 141 (491)
-+.......+..+..++++++.+|+|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445566667777789999999999999998654
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.31 E-value=0.055 Score=54.21 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=32.8
Q ss_pred ccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH
Q 011188 234 VTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 234 ~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
.++||+|.+-+.... ..-..+..+.....++.-++.++|+...+....++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999999554321 1234455555556667777888888766555555554
No 264
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.016 Score=58.18 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
+|+.||.|+|||.++.+ +...+..
T Consensus 43 ~Lf~GP~GtGKTTlAri-LAk~Lnc 66 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI-LAKRLNC 66 (484)
T ss_pred EEEECCCCCCHHHHHHH-HHHhcCc
Confidence 79999999999987655 4444443
No 265
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.038 Score=58.20 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=24.5
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+++++||||+|.|....+ ..+.++++..++...+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999998875442 33444555555555444433
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.24 E-value=0.018 Score=53.87 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=30.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC---CCCEEEEEcccHHHHHHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~---~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
.+++++++|+-|||.+ +-.+...++..... .-|.+++-+|...-....+..+-
T Consensus 62 p~lLivG~snnGKT~I----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHH----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4799999999999985 22233233322211 23566677777655444444433
No 267
>PTZ00293 thymidine kinase; Provisional
Probab=96.23 E-value=0.041 Score=48.98 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
|.=.++.+|++||||.-.+-.+-.+... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEecc
Confidence 3346789999999997645444333333 66788888863
No 268
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.22 E-value=0.038 Score=47.55 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=29.6
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
...+++|+||||.|.... ...+.++++.-+.+..++++|...
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 568899999999987543 566667777777777666666553
No 269
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.22 E-value=0.12 Score=53.80 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 108 EPTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~---~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
-|.|.-.+-|..+. ..+-.++.+|=|.|||.+..+.++ ++... .+.+++|.+|...-+.++.+.+.++..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 34555555455443 456688899999999987554333 33221 257899999998888888877776554
No 270
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.21 E-value=0.028 Score=60.29 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 109 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
|++-|.+++.. ...+++|.|..|||||.+.+-- +.++.... ......+|+|+.|+.-|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~r-i~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNK-IAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHH-HHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998865 3468999999999999885443 44444321 1124569999999999999999998754
No 271
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.17 E-value=0.041 Score=65.33 Aligned_cols=62 Identities=23% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHH---HHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 011188 107 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 175 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~---~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 175 (491)
..+++.|.+|+..++.+. -+++.+..|+|||++.. -++...+.. .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 479999999999988764 47888999999998641 222222222 267799999997655444
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.17 E-value=0.063 Score=53.35 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=34.0
Q ss_pred CccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHHc
Q 011188 233 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 286 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 286 (491)
.+++||+|=+-++... ..-..+..+.....++.-++.++||...+....++.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 5678888888764432 12345555555556666678888887766665665553
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.16 E-value=0.035 Score=55.99 Aligned_cols=109 Identities=14% Similarity=0.227 Sum_probs=59.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
..+++.||+|+|||... .++...+... +.+++++.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc----------------------
Confidence 35899999999999753 3355555431 456766654 3444433332211
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhc-CCCCceEEeccCCcHHHHHH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL 281 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 281 (491)
...+.+... ..+.+++++||+|.+.... ....+..++..+ ....++|+.|-+.|..+..+
T Consensus 191 -----------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 191 -----------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 001111111 2367899999999876532 233344444333 23456666665556655444
No 274
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.023 Score=59.49 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=23.8
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEe
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 270 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 270 (491)
..++++||||+|+|.... ...+.+++..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999887544 33444455554444444444
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.029 Score=57.56 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.1
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+++++||||+|.|....+ ..+.+.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875443 34445666655566555544
No 276
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.026 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|++||.|+|||.++.+ +...+..
T Consensus 45 a~Lf~Gp~G~GKTT~Ari-lAk~Lnc 69 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI-IAKAVNC 69 (507)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 599999999999987655 4445443
No 277
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.07 E-value=0.027 Score=57.76 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhc-----C----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 111 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 111 ~~Q~~~i~~i~~-----~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
|+|.-.+..++- + +.+++.-|=+-|||......++..+.-. ...+..+++++++++-|..+.+.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578777766651 2 2488888999999976555445554432 23467899999999999999998887
Q ss_pred hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhc--cCccccCccEEEEccccccccCCcHHHHHHHHh
Q 011188 182 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 259 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~ 259 (491)
+........... ....... ....|.....+.++..+.. ....-.+.+++|+||+|...+......+..-..
T Consensus 77 ~i~~~~~l~~~~------~~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK------KPKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch------hhhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 654321110000 0000000 0112332222222222211 122223578999999999876443444444444
Q ss_pred hcCCCCceEEec
Q 011188 260 QIRPDRQTLYWS 271 (491)
Q Consensus 260 ~~~~~~~~i~~S 271 (491)
. +++++++.+|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 4 3455555544
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.13 Score=49.94 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc-ccHHH--HHHHHHHHHHhcCCCCceEEEEECCccC
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA-PTREL--AVQIQQESTKFGASSKIKSTCIYGGVPK 199 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~-Pt~~L--~~q~~~~~~~~~~~~~~~v~~~~~g~~~ 199 (491)
++.+++++|+|+|||....-.+. .+..+ +.++.+++ .+--. +.|| +.+....++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gAveQL----k~yae~lgvpv--------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGAVEQF----QGYADKLDVEL--------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccHHHHH----HHHhhcCCCCE---------
Confidence 34578999999999976544332 33221 44555444 33211 2343 33333322221
Q ss_pred hhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcH-H
Q 011188 200 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-E 277 (491)
Q Consensus 200 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~ 277 (491)
.+..+|..+.+.+.... ...++++|++|=+=+.... .....+..+.....+..-++.+||+... +
T Consensus 265 ------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 265 ------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 12235555555443211 1245788999988764422 1233444444444444445667876533 4
Q ss_pred HHHHHHHH
Q 011188 278 VEHLARQY 285 (491)
Q Consensus 278 ~~~~~~~~ 285 (491)
.......+
T Consensus 332 ~~~i~~~f 339 (407)
T PRK12726 332 VMTILPKL 339 (407)
T ss_pred HHHHHHhc
Confidence 44444443
No 279
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.06 E-value=0.026 Score=58.40 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=58.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
.++|.+++|+|||.. +.++...+... ..+.+++++.. .++++++...+..-
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~-----~~g~~V~Yita-eef~~el~~al~~~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRL-----YPGTRVRYVSS-EEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEeeH-HHHHHHHHHHHHhc----------------------
Confidence 389999999999974 33344444331 12455666554 45554443333210
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCC-CCceEEeccCCcHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP-DRQTLYWSATWPKEV 278 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~ 278 (491)
..+.+... +.++++|||||+|.+.... ....+..++..+.. ..++|+.|-..|..+
T Consensus 367 -----------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 367 -----------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred -----------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 01111111 3457899999999886543 23444455555433 466776555555544
No 280
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.06 E-value=0.025 Score=56.58 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=75.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
-.++.+..|||||.+...-++..+... ..+.+++++-|+.. |...+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 367889999999988887777777663 12567888888875 66666666665443333321111111100 01
Q ss_pred HHhhcCCcEEEeCh-HHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcC--CCCceEEeccCCcH
Q 011188 204 RDLQKGVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQTLYWSATWPK 276 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~-~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~ 276 (491)
.....+..|++..- +...+ ......++++.+|||..+.. ..+..++..++ .....+++|.+++.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 10111334555443 11111 11223468999999998853 34455554454 22224788888754
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.03 E-value=0.11 Score=52.58 Aligned_cols=112 Identities=12% Similarity=0.188 Sum_probs=58.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
.+++.||+|+|||..+ .++...+... ..+.+++++... .+..++...+.. .
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~-----~~~~~v~yi~~~-~f~~~~~~~~~~---~------------------- 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQN-----EPDLRVMYITSE-KFLNDLVDSMKE---G------------------- 182 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEHH-HHHHHHHHHHhc---c-------------------
Confidence 5899999999999753 3344554432 124567777543 343333332211 0
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcC-CCCceEEeccCCcHHHHHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLA 282 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~ 282 (491)
+.+.+...+. .+.++|++||+|.+.+.. ....+..++..+. ...++|+.|-..|..+..+.
T Consensus 183 -----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 -----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred -----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 0111211111 246799999999876542 2233444444332 34455555545555554443
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=96.02 E-value=0.085 Score=51.02 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=24.1
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEe
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 270 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 270 (491)
..+++|+||+|.|.... ...+.+++...++...+++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEE
Confidence 57899999999986543 44555666555555544443
No 283
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.99 E-value=0.034 Score=49.76 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
++|+.+|+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999986444
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.036 Score=56.04 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=59.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
.+++.|++|+|||.. +.++...+... ..+.+++++.+ .++...+...+..-.
T Consensus 143 pl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 489999999999964 33344444431 12556766655 456555554443200
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcC-CCCceEEeccCCcHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 278 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 278 (491)
+.+..+.. .+.+.++||+||+|.+.... ....+..++..+. ...|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13467899999999876432 2334444444443 3446665555555443
No 285
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.96 E-value=0.078 Score=53.19 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=26.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
.+++.|++|+|||... .++...+... ..+..++++.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEEH-HHHHHH
Confidence 4789999999999753 3355555442 12455667643 344433
No 286
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.95 E-value=0.032 Score=59.21 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=70.5
Q ss_pred HHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEec-ccccc
Q 011188 320 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARG 394 (491)
Q Consensus 320 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~G 394 (491)
.+..++.....+.+++|.+|++.-|...++.+++ .++++..++|+++..+|..+++...+|+.+|+|+|. .+...
T Consensus 273 a~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~ 352 (630)
T TIGR00643 273 AALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK 352 (630)
T ss_pred HHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc
Confidence 3444555555677999999999999888877764 368899999999999999999999999999999994 45667
Q ss_pred CCCCCCCEEEE
Q 011188 395 LDVKDVKYVIN 405 (491)
Q Consensus 395 idi~~~~~VI~ 405 (491)
+++.++.+||.
T Consensus 353 ~~~~~l~lvVI 363 (630)
T TIGR00643 353 VEFKRLALVII 363 (630)
T ss_pred ccccccceEEE
Confidence 78888888874
No 287
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.052 Score=52.53 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhhc--C---CcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 109 PTPIQAQGWPMALK--G---RDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~--~---~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
++|||...+..+.+ + +.+++.+|.|.||+..+.. +.+.+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 46888888887664 2 2488999999999977544 4455554
No 288
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.92 E-value=0.041 Score=51.51 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.++++.+|+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999987544
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.90 E-value=0.039 Score=53.34 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=26.4
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467899999998843333456666677766666666544
No 290
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.048 Score=56.75 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=24.7
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+++++||||+|+|.... ...+.+++...++...+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999886543 334555555555555455433
No 291
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.047 Score=55.36 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=24.5
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+++++||||+|.+....+ ..+.+.+...++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35788999999998865432 33444455544444444443
No 292
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.86 E-value=0.084 Score=48.31 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=33.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
-.+.-+++.+++|+|||+.++- ++..+.. ++.++++++.. +-..+..+.+.+++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~-~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQR-LAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHH-HHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3466799999999999976433 2333322 25667888743 33345555555544
No 293
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.85 E-value=0.038 Score=50.18 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=59.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
.+++.+++|+|||-. +.++...+... ..+.+|+++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 489999999999973 44454444431 125567666543 444333333322
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcC-CCCceEEeccCCcHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 278 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 278 (491)
...+.+.+. +...++++||++|.+.... ....+-.++..+. ...++|+.|...|...
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111122221 3468899999999987532 2344445555443 4567777776666543
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.84 E-value=0.11 Score=55.60 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=16.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
++|.|+||+|||++.-. ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999987443 555553
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.098 Score=45.47 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=51.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
=.++.+|+.||||...+-.+-.+.. .+.++++..|...- ..+...+.-.-|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~--------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~----- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKE--------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHH--------cCCeEEEEeccccc-------------ccccceeeeccCCcc-----
Confidence 3678999999999874443333222 27778898885211 111111211222211
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEcccccc
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~ 245 (491)
.-++|-.+..+.+.+....... .+++|.+|||+-+
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~ 94 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF 94 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC
Confidence 2456667777777776543322 2789999999954
No 296
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.055 Score=53.30 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=23.3
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+.+++|+||+|.+....+ ..+.+.+...++...+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4678999999999864332 23344444444454455543
No 297
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.033 Score=59.80 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=23.7
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEe
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 270 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 270 (491)
.+++++||||+|.|.... ...+.+++...+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986433 23444455554455555544
No 298
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.77 E-value=0.054 Score=47.38 Aligned_cols=145 Identities=17% Similarity=0.065 Sum_probs=76.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH-HHHHHHHHHhcCCCCceEEEEECCccCh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA-VQIQQESTKFGASSKIKSTCIYGGVPKG 200 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~-~q~~~~~~~~~~~~~~~v~~~~~g~~~~ 200 (491)
....+++..++|.|||.+++--++..+.. +.+|+++-=.+--. .-=...++++ .++.....-.+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCccc
Confidence 45678999999999999877666665554 67777774222110 0001112221 123222211110000
Q ss_pred hhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHH
Q 011188 201 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEV 278 (491)
Q Consensus 201 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 278 (491)
. ...+--.......+..... .+.-..+++||+||+-..++.++ ...+..++...++..-+|+.--..|+++
T Consensus 90 ~------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 90 T------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred C------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0 0000000111112222221 12235789999999998887774 4567777777766666676666677777
Q ss_pred HHHHHH
Q 011188 279 EHLARQ 284 (491)
Q Consensus 279 ~~~~~~ 284 (491)
.+.+..
T Consensus 163 ie~ADl 168 (191)
T PRK05986 163 IEAADL 168 (191)
T ss_pred HHhCch
Confidence 666554
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.76 E-value=0.099 Score=42.85 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLL 142 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~ 142 (491)
+++.+|.|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58899999999986333
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.058 Score=52.25 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=26.6
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEecc
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
...+++|+|||+.|.... ...+.+.+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 578899999999887532 4555555555555555555443
No 301
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.2 Score=49.86 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
++.+.+++|||+|||+.....+...+... ......++.+.+.-.+ ..+++..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~----------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR----------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCcee-----------
Confidence 44588899999999986543222222221 1122345555553222 23334444433333322
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCc-HHHHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 280 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 280 (491)
.+.++..+...+. .+.+.+++++|.+=+.... .....+..+.....+...++.+|||.. ..+.+
T Consensus 253 ----------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 1223333322222 2456788999986332211 012233333222234456688999974 44555
Q ss_pred HHHHHccCCcEEEecCCCcccccceeeeeeccChhhHHHHHHHHHHhhccCCeEEEEeCCcc
Q 011188 281 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 342 (491)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVf~~~~~ 342 (491)
....|-..++ -.-.+..+++..+...++.++... +-++..++...+
T Consensus 319 ~~~~f~~~~~--------------~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 319 VISAYQGHGI--------------HGCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHhcCCCC--------------CEEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 5555532111 111222334445566666666653 235555555443
No 302
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.033 Score=57.73 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=24.9
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
.+++++||||+|.|....+ ..+.+.++.-+....+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 4688999999999875443 33444455544555555554
No 303
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.71 E-value=0.1 Score=52.10 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.++++.||+|+|||... -.++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 56999999999999863 335555443
No 304
>PF13173 AAA_14: AAA domain
Probab=95.71 E-value=0.089 Score=43.19 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=25.3
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
.-.+|++||+|.+.+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999864 466777776654 44555544433
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.69 E-value=0.1 Score=44.33 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.0
Q ss_pred ccCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHHHHHHH
Q 011188 231 LRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 283 (491)
...+++||+||+-.....++ ...+..+++..++...+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998766653 467777888887788888888888887776654
No 306
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.69 E-value=0.083 Score=53.09 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
++++.||+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999986443
No 307
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.67 E-value=0.059 Score=49.64 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
|..+++.+++|+|||..++-.+...+.. +.++++++- .+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 5679999999999997655434444432 667888874 456667777777665
No 308
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.65 E-value=0.081 Score=56.57 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHh-CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 313 SESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 313 ~~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
....|-...+..+.. +..+.++||.++++..+..+.+.|++ .+..+..+||+++..+|...+.+...|+.+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 334555555444433 33466899999999999999999976 4778999999999999999999999999999999964
Q ss_pred ccccCCCCCCCEEEEcCC
Q 011188 391 AARGLDVKDVKYVINYDF 408 (491)
Q Consensus 391 ~~~Gidi~~~~~VI~~~~ 408 (491)
+.. +.+.++.+||..+.
T Consensus 251 al~-~p~~~l~liVvDEe 267 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred Hhc-ccccCCCEEEEECC
Confidence 322 45667888875543
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.64 E-value=0.16 Score=47.62 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=34.0
Q ss_pred cCccEEEEccccccccC-CcHHHHHHHHhhcC------CCCceEEeccCCcHHHHHHHHHHc
Q 011188 232 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR------PDRQTLYWSATWPKEVEHLARQYL 286 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~~~~~~~~~ 286 (491)
.++++||+|=+-+.... .....+..+....+ ++-.++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 46789999988876532 12345555555444 566678889987655444444443
No 310
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.056 Score=56.57 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=25.4
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+++++||||+|.|.... ...+.+.+...++...+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3578899999999876433 344555555555555455444
No 311
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.57 E-value=0.16 Score=46.41 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|..+++.+++|+|||..+...+...+.. +..+++++. .+...++.+..+.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 45679999999999997544323333222 456777764 233445555555443
No 312
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.55 E-value=0.093 Score=54.00 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHh-hccCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEeccc
Q 011188 314 ESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 391 (491)
Q Consensus 314 ~~~k~~~l~~~l~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 391 (491)
...|-...+.++.. +..+.++||.+|++.-+..+++.|++. +..+..+||+++..+|.....+..+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 34455555555543 334668999999999999999999764 6788999999999999999999999999999999543
Q ss_pred cccCCCCCCCEEEEcC
Q 011188 392 ARGLDVKDVKYVINYD 407 (491)
Q Consensus 392 ~~Gidi~~~~~VI~~~ 407 (491)
-. ..++++..||.-+
T Consensus 87 lf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPFKNLGLIIVDE 101 (505)
T ss_pred Hc-CcccCCCEEEEEC
Confidence 22 3566788877544
No 313
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.54 E-value=0.13 Score=51.92 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+-+.+++|||+|||++...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4578899999999987554
No 314
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.54 E-value=0.056 Score=61.88 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=77.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 187 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 187 (491)
++|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-.++|+|+=|+.-|..+.+.+.+-....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 35888999997 4678999999999999998666566555432 123459999999999988888877532110
Q ss_pred ceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCcccc--CccEEEEccccc
Q 011188 188 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADR 244 (491)
Q Consensus 188 ~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~--~~~~lIiDEah~ 244 (491)
+. .........+.+..-...-|+|...++..+.+.....- +..+=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011112222233346788999998765544322211 224566888774
No 315
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.53 E-value=0.17 Score=48.33 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
++++++.|++|+|||..+. ++...+.. .+..++++.- .+|+.++...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~-------~g~~v~~~~~-~~l~~~lk~~~~~--------------------- 205 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK-------KGVSSTLLHF-PEFIRELKNSISD--------------------- 205 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH-------cCCCEEEEEH-HHHHHHHHHHHhc---------------------
Confidence 4579999999999997633 34455443 1444554432 2454444332210
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcH--HHHHHHHhhc-CCCCceEEeccCC
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE--PQIKKILSQI-RPDRQTLYWSATW 274 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~--~~~~~i~~~~-~~~~~~i~~SAT~ 274 (491)
.+...+++. +.+.++|||||........+. ..+..|+... .....+++.|--.
T Consensus 206 ------------~~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 206 ------------GSVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ------------CcHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 011112121 457889999999854333333 2344455433 3455666655543
No 316
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.11 Score=54.07 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=25.7
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+.+++||||+|.|.... ...+.+.+...++...+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3578899999999887543 334445555555555555544
No 317
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.078 Score=55.61 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=25.1
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+.+++||||+|.|.... ...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876433 234445555555555555544
No 318
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.067 Score=55.27 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=25.2
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+.+++||||+|.|.... ...+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999887543 233444555545555555554
No 319
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.48 E-value=0.13 Score=44.40 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=39.7
Q ss_pred cCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 284 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 284 (491)
..+++||+||+-...+.++ ...+..+++..++...+|+..-..|+.+.+.+..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5789999999998777663 3566677877777777777777778777666543
No 320
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.47 E-value=0.057 Score=51.77 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 100 EISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 100 ~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
.+...+. +++.|.+.+..+. .+++++++++||||||+. +-+++..+...+ ...+++.+=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 3434443 5677887776544 567899999999999974 444555543311 245677777777763
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.44 E-value=0.052 Score=51.14 Aligned_cols=41 Identities=29% Similarity=0.182 Sum_probs=26.7
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
+..+.-+++.|++|+|||...+..+...+.. .+..+++++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc
Confidence 4556779999999999997544323332222 2566778764
No 322
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.44 E-value=0.07 Score=58.67 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=68.3
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCCC
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDV 397 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi 397 (491)
.++.....+.+++|.+||+.-|.+.++.+++. ++.+..+++..+..++..+++.+.+|+.+|+|+| ..+...+.+
T Consensus 492 a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f 571 (926)
T TIGR00580 492 AAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF 571 (926)
T ss_pred HHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc
Confidence 34444455678999999999999998887653 5678889999999999999999999999999999 456667888
Q ss_pred CCCCEEEE
Q 011188 398 KDVKYVIN 405 (491)
Q Consensus 398 ~~~~~VI~ 405 (491)
.++.+||.
T Consensus 572 ~~L~llVI 579 (926)
T TIGR00580 572 KDLGLLII 579 (926)
T ss_pred ccCCEEEe
Confidence 88888874
No 323
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.41 E-value=0.091 Score=53.13 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+.-+++.+++|+|||+..+. ++..+.. .+.+++++.-. +-..|+.....+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq-~a~~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQ-VAARLAA-------AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 45688999999999975443 3333322 25678888754 55567777666664
No 324
>PRK05973 replicative DNA helicase; Provisional
Probab=95.41 E-value=0.13 Score=47.02 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=41.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 108 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.++| ..+...-+..|.-++|.|++|+|||...+--+...+.. +.+++|++-- +-..|+.+.+..++
T Consensus 50 ~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 4555 33344455667779999999999997655433333322 6668888643 33566777777664
No 325
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.026 Score=52.58 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
++..|+++.+|||||||+.+.- |..++.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT--LAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT--LAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH--HHHHhC
Confidence 3446899999999999985443 344443
No 326
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.029 Score=53.14 Aligned_cols=61 Identities=25% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCCCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 105 GFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 105 ~~~~~~~~Q~~~i~~i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
.|..+++-|...+-.+...+ ++|+++.||||||+. +-+++.++- ..-+++.+=.|.||..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 45688999999998877765 999999999999973 222222221 13379999999888543
No 327
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.12 Score=49.61 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=28.3
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
....+++|+|+||.|.... ...+.++++.-++...+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3467899999999987543 55666666665556555554433
No 328
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.37 E-value=0.093 Score=54.87 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.2
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
....+++||||+|.|.... ...+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999987543 334445555555666666654
No 329
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.36 E-value=0.086 Score=57.18 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 107 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
..|+|-|.+++... ...++|.|..|||||.+..-- +.++.... .-...++|+++-|+.-|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~r-ia~Li~~~---~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHR-IAHLIAEK---NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHH-HHHHHHcC---CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 36899999999753 467999999999999885443 34444321 11235699999999999999999887643
No 330
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.36 E-value=0.034 Score=57.78 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHH-HHHHHh
Q 011188 108 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ-QESTKF 182 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~-~~~~~~ 182 (491)
..+|||.+.+..+... +.++++.++-+|||.+.+. ++-+...+ ....+|++.||.++|..+. ..+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 6799999999987765 4699999999999996444 33333332 1344899999999998876 334443
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.32 Score=48.09 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=31.4
Q ss_pred cCccEEEEccccccccC-CcHHHHHHHHhhcC---CCCceEEeccCCcH-HHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR---PDRQTLYWSATWPK-EVEHLARQY 285 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~---~~~~~i~~SAT~~~-~~~~~~~~~ 285 (491)
.++++|+||=+-+.... .....+..++.... +...++.+|||... ++....+.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46789999977654321 12334444444432 23456888999865 555555555
No 332
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.35 E-value=0.15 Score=54.09 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHhhc-cCCeEEEEeCCcccHHHHHHHHHhC-C-CceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 314 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 314 ~~~k~~~l~~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-~-~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
.+.|.+.++.++.+.. .++++||.++.+..+..+.+.|+.. + ..+..+|++++..+|...+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 3578888888887754 4678999999999999999999865 3 57999999999999999999999999999999954
Q ss_pred ccccCCCCCCCEEEEcC
Q 011188 391 AARGLDVKDVKYVINYD 407 (491)
Q Consensus 391 ~~~Gidi~~~~~VI~~~ 407 (491)
+. =.-++++..||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 32 13455777777544
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=95.31 E-value=0.13 Score=48.85 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999987554
No 334
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.14 Score=49.33 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhhcC--C---cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 109 PTPIQAQGWPMALKG--R---DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~--~---~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
++|||+..+..+.+. + .+++.+|.|.|||..+.. +...+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 368888888877642 2 488999999999976554 4444443
No 335
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.025 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
..|+|+.+|||||||+.+.- |..++.
T Consensus 226 KSNvLllGPtGsGKTllaqT--LAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQT--LARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHHHHH--HHHHhC
Confidence 35799999999999985433 444444
No 336
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.29 E-value=0.064 Score=47.76 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=28.1
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
.+.+++|+||||.|.+. -...+++.+.-..+..++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 57789999999998753 356666766666555555544444
No 337
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.11 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+|+.+|.|+|||.++.+ +.+.+.
T Consensus 40 a~Lf~GPpG~GKTtiAri-lAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI-FAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHH-HHHhcc
Confidence 488999999999987665 444444
No 338
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.23 E-value=0.05 Score=51.64 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
++|+.+|.|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 599999999999975443
No 339
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.18 E-value=0.06 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+.-+++++|||||||+. +-.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456699999999999975 3445555543
No 340
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.17 E-value=0.15 Score=50.17 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+.-+++.+++|+|||...+. ++..+.. .+.+++++.-. +-..|+.....+++
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 45688999999999976443 3333332 14568888754 44566666666654
No 341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.16 E-value=0.1 Score=55.86 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=26.4
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHH
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHL 281 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 281 (491)
+..++|+||+|++.. .....++..+ ...++++++||-++....+
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENPYFEV 152 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCChHhhh
Confidence 456899999998753 2223333333 3456778887755444333
No 342
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.16 E-value=0.12 Score=53.38 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=77.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC--CceEEEEECCccChh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGP 201 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~--~~~v~~~~~g~~~~~ 201 (491)
+-.++..|=-.|||.... +++..+... -.+.++++++|.+.-++.+.+++..+.... .-.+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 458889999999998644 555544421 127889999999999999999888754321 111111222 111
Q ss_pred hHHHhhcC--CcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccC
Q 011188 202 QVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 273 (491)
Q Consensus 202 ~~~~~~~~--~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 273 (491)
...+.++ ..|.+++. -..+...-..++++|+|||+-+.+. .+..++-.+ ..+.++|++|.|
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecC
Confidence 0011112 24555531 0111222347899999999988754 333443222 247889999988
No 343
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.15 Score=52.64 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=25.7
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
..+..++||||+|++.... ...+.+.+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987543 334555555555555555544
No 344
>PRK10867 signal recognition particle protein; Provisional
Probab=95.13 E-value=0.21 Score=49.92 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 011188 126 LIGIAETGSGKTLAYLL 142 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~ 142 (491)
+++++++|+|||++..-
T Consensus 103 I~~vG~~GsGKTTtaak 119 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 77889999999987554
No 345
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.2 Score=48.92 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=26.0
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
....++||||+|.|.... ...+.++++..+....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986443 344556666655555555555
No 346
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.12 E-value=0.15 Score=47.81 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHhh----cCC-cEEEEcCCCChHHHHHH
Q 011188 108 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYL 141 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~-~~ii~~~TGsGKT~~~~ 141 (491)
-+++.+.+++..+. .+. .+++.||+|+|||+.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666666543 233 58899999999998633
No 347
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.09 Score=52.44 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCCCcCCcccCC---CCHHHHHHHHHCC---CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHH
Q 011188 81 VPKPVKSFRDVG---FPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 81 ~p~~~~~f~~~~---l~~~~~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 141 (491)
+-.|-..|++++ |+.+..+.+..+- .+.|.-+-+-.+ ..=+.+++-+|+|+|||+++-
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi---~HVKGiLLyGPPGTGKTLiAR 274 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI---KHVKGILLYGPPGTGKTLIAR 274 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc---cceeeEEEECCCCCChhHHHH
Confidence 345667788874 6776665554321 122222222211 223679999999999998643
No 348
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.08 E-value=0.073 Score=51.15 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHh-hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 98 MQEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 98 ~~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
++.+.+.|. +++.|.+.+..+ ..+++++++++||||||.. +-+++..+... ....+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 344444454 557788887654 4677899999999999964 44455443221 124567777777776
No 349
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.14 Score=49.14 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
.++|||...+..+. +++ -.++.+|.|.||+..+.. +.+.+...... ..+ | =.|+ .++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC~~~~---~~~-C-g~C~----------sC~ 66 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLCQNYQ---SEA-C-GFCH----------SCE 66 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcCCCCC---CCC-C-CCCH----------HHH
Confidence 46788888887655 333 489999999999976444 44555442210 010 0 0011 122
Q ss_pred Hh--cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 181 KF--GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 181 ~~--~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
.+ +...++... .... .+..|-|-....+.+.+.. .......+++|||+||+|.... ...+-+++
T Consensus 67 ~~~~g~HPD~~~i--~p~~----------~~~~I~vdqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (319)
T PRK06090 67 LMQSGNHPDLHVI--KPEK----------EGKSITVEQIRQCNRLAQE-SSQLNGYRLFVIEPADAMNESA-SNALLKTL 132 (319)
T ss_pred HHHcCCCCCEEEE--ecCc----------CCCcCCHHHHHHHHHHHhh-CcccCCceEEEecchhhhCHHH-HHHHHHHh
Confidence 21 222232221 1110 0011222222222222222 1224567899999999987543 45566666
Q ss_pred hhcCCCCceEEeccC
Q 011188 259 SQIRPDRQTLYWSAT 273 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT 273 (491)
+.-+++..+|+.|..
T Consensus 133 EEPp~~t~fiL~t~~ 147 (319)
T PRK06090 133 EEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCCCCeEEEEEECC
Confidence 665555555555544
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=95.06 E-value=0.2 Score=51.47 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~ 141 (491)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.13 Score=49.84 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 180 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 180 (491)
.++|||...+..+. +++ -.++.+|.|.||+..+.. +.+.+....... .++ |= .|+. ++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~--~~~-Cg-~C~s----------C~ 66 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQG--HKS-CG-HCRG----------CQ 66 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCC--CCC-CC-CCHH----------HH
Confidence 35788888887665 333 488999999999976444 455555421111 000 00 1221 22
Q ss_pred Hh--cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHH
Q 011188 181 KF--GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 258 (491)
Q Consensus 181 ~~--~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~ 258 (491)
.+ +...++... ..... +..|-|-....+.+.+... ......+++|||+||+|.... ...+.+++
T Consensus 67 ~~~~g~HPD~~~i--~p~~~----------~~~I~idqiR~l~~~~~~~-~~~g~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (334)
T PRK07993 67 LMQAGTHPDYYTL--TPEKG----------KSSLGVDAVREVTEKLYEH-ARLGGAKVVWLPDAALLTDAA-ANALLKTL 132 (334)
T ss_pred HHHcCCCCCEEEE--ecccc----------cccCCHHHHHHHHHHHhhc-cccCCceEEEEcchHhhCHHH-HHHHHHHh
Confidence 22 222233221 11100 0012222222233333222 224578899999999987543 45556666
Q ss_pred hhcCCCCceEEeccC
Q 011188 259 SQIRPDRQTLYWSAT 273 (491)
Q Consensus 259 ~~~~~~~~~i~~SAT 273 (491)
+.-++...+|++|.-
T Consensus 133 EEPp~~t~fiL~t~~ 147 (334)
T PRK07993 133 EEPPENTWFFLACRE 147 (334)
T ss_pred cCCCCCeEEEEEECC
Confidence 665555555555543
No 352
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.21 Score=49.06 Aligned_cols=135 Identities=18% Similarity=0.127 Sum_probs=63.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCC---CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~---~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~ 201 (491)
-.|+.+|.|+||+..+.. +...++........ ..+..+-+|+.-.-+. .+.. +...++..+.-.... ...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~----~i~~-~~HPDl~~i~~~~~~-~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR----RIAA-GAHGGLLTLERSWNE-KGK 115 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHH----HHHc-cCCCCeEEEeccccc-ccc
Confidence 489999999999976444 55666553211110 0122333444322222 1222 223333332211000 000
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 202 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
.....|.|-....+.+.+... .......++||||+|.|.... ...+.+++...+....+|++|..
T Consensus 116 -----~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 116 -----RLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred -----cccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 001234443333344443322 223567899999999886432 34455555555445555555544
No 353
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.00 E-value=0.26 Score=49.28 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=27.7
Q ss_pred CccEEEEccccccccC-CcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH
Q 011188 233 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
.+++||+|=+-++... ..-..+..+...+.++--++.++|+...+....++.+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 4566777777654321 1223444444444444445666666655555555544
No 354
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.1 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|+.+|.|+|||.++.+ +...+..
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l~c 64 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAVNC 64 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 388999999999987655 4444443
No 355
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.99 E-value=0.11 Score=49.64 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=41.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHh-hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 99 QEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 99 ~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
+.+.+.|. +++-|.+.+..+ ..+++++++++||||||.. +-+++..+... ....+++++-.+.|+.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 34444443 445566666544 4567899999999999975 34345444331 1245688888887773
No 356
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.12 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=17.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
-+|++||.|+|||.++-+ +...+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~-lAkal~ 63 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI-FAKAVN 63 (559)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 478899999999987555 334443
No 357
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.96 E-value=0.15 Score=52.59 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHhhccCCeEEEEeCCcccH----HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-
Q 011188 314 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT- 388 (491)
Q Consensus 314 ~~~k~~~l~~~l~~~~~~~~~lVf~~~~~~~----~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT- 388 (491)
+..-...++.++.....+.++...+||.--| +.+.+.|...++.+..+.|.+....|.++++...+|+++++|.|
T Consensus 294 SGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH 373 (677)
T COG1200 294 SGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH 373 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc
Confidence 3445666777777777888999999996544 55556666678999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEE
Q 011188 389 DVAARGLDVKDVKYVI 404 (491)
Q Consensus 389 ~~~~~Gidi~~~~~VI 404 (491)
..+...+++.++-.||
T Consensus 374 ALiQd~V~F~~LgLVI 389 (677)
T COG1200 374 ALIQDKVEFHNLGLVI 389 (677)
T ss_pred hhhhcceeecceeEEE
Confidence 4578899999988887
No 358
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.13 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+|+.||.|+|||.++.+ +...+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~-lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI-LAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 368999999999987554 445544
No 359
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.95 E-value=0.082 Score=51.83 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+..+++++|||||||+. +-+++.++...+ ...+++.+=...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-----~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-----PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-----CCceEEEEecCchh
Confidence 44689999999999975 455666665421 13345555444443
No 360
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.90 E-value=0.088 Score=48.63 Aligned_cols=48 Identities=25% Similarity=0.173 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc---cHHHHHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP---TRELAVQI 175 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P---t~~L~~q~ 175 (491)
..|.-+++.|++|+|||...+--++..+.. .+..+++++. ..+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHHH
Confidence 445668999999999997544433333332 1556888873 44454443
No 361
>PHA00729 NTP-binding motif containing protein
Probab=94.86 E-value=0.23 Score=44.76 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=36.1
Q ss_pred cEEEeChHHHHHHHhccCccccCccEEEEccccccccC-CcH----HHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH
Q 011188 211 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFE----PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 211 ~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~-~~~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
..++.+.+.|.+.+.........++++|+||+=.-... .+. .....+...+.....++.+...-+.++...++.-
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 45555555555555432222234678999993211111 011 1112233333334556777766666666665553
No 362
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.089 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
+|++||.|+|||.++.+ +...+..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~-lAk~LnC 64 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI-LAKSLNC 64 (618)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhcC
Confidence 69999999999987655 4455443
No 363
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.84 E-value=0.14 Score=46.74 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=65.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC-----ceEEEEECC
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-----IKSTCIYGG 196 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~-----~~v~~~~~g 196 (491)
.|..+++.+++|+|||...+--+...+.. .+.++++++-. +-..++.+.+..++.... -....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 34679999999999997644434444333 04457777743 445666777776642210 001111000
Q ss_pred ccChhhHHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccC----CcHHHHHHHHhhcCCCCceEEecc
Q 011188 197 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM----GFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 197 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~----~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
... ... . -..++.+...+...... .+.+.+|+|-...+... .+...+..+...++....++++++
T Consensus 90 ~~~-~~~-------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PER-IGW-------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGG-ST--------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccc-ccc-------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000 000 0 12333343333321111 13378999999977221 144556666666555555556665
Q ss_pred C
Q 011188 273 T 273 (491)
Q Consensus 273 T 273 (491)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 5
No 364
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.84 E-value=0.23 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.++++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999763 33555544
No 365
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.76 E-value=0.45 Score=45.89 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=24.8
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
...+|++||+|.+.... ...+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999885432 345556666655666556544
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.74 E-value=1.1 Score=38.85 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=27.9
Q ss_pred CccEEEEcccccccc-CCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHHH
Q 011188 233 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 233 ~~~~lIiDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
..+++|+|....... ......+..+.....+..-++.++|.-..+..+.+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 567899999886532 11223333333333345555666666544444444444
No 367
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.74 E-value=0.33 Score=44.55 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+.-+++.+++|+|||..+..-+...+.. +.+++++.-.. -..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 4568889999999997644433333322 66787877543 3345666666654
No 368
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.13 Score=54.56 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=77.9
Q ss_pred eeeccChhhHHHHHHHHHHhh-ccCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q 011188 308 HVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIM 385 (491)
Q Consensus 308 ~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vL 385 (491)
.+.-+..+.|.+..++++... ..++.+||.++.+.....+...|+.. +.++..+|+++++.+|.....+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 345567778888888888875 45669999999999999998888754 7899999999999999999999999999999
Q ss_pred EEeccccccCCCCCCCEEE
Q 011188 386 TATDVAARGLDVKDVKYVI 404 (491)
Q Consensus 386 vaT~~~~~Gidi~~~~~VI 404 (491)
|.|..+- =.-++++-.+|
T Consensus 301 IGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred EEechhh-cCchhhccEEE
Confidence 9995431 13345666666
No 369
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.69 E-value=0.072 Score=46.54 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 011188 118 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 175 (491)
Q Consensus 118 ~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 175 (491)
.++..++++++.+++|+|||..+.. +...+... +..++++ +..+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEe-ecCceeccc
Confidence 3445678899999999999976444 44555542 5556665 444665544
No 370
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.18 Score=49.96 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=26.2
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCc
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 275 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 275 (491)
....+++||||+|+|.... ...+.+.++..++.. ++++++|-+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~ 157 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSP 157 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECCh
Confidence 3467899999999986543 344555555544444 444555533
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.66 E-value=0.48 Score=50.32 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=37.7
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCc
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 275 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 275 (491)
+.-++|+|+-|++.+......+..+++..+++...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999888999999999999999999887743
No 372
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.62 E-value=0.44 Score=41.08 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=63.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
+.+--..|=|||.+++--++..+-. +.+|+++-=.+. -..-=...++++. ++.....-.+-.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccccCCCc
Confidence 4455678999999887766666544 778888864433 1111112223332 232222111110100000
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHHHHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 282 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 282 (491)
. .+ .......++.... ...-..+++||+||+-...+.++ ...+..++...++..-+|+.--.+|+.+.+.+
T Consensus 75 ~----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 01 0111112222222 22235789999999998877764 45677777777777777776666777766665
Q ss_pred H
Q 011188 283 R 283 (491)
Q Consensus 283 ~ 283 (491)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 373
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.18 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|+.||.|+|||..+.. +...+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~-lAk~L~C 64 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI-FAKAINC 64 (605)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 488999999999987555 4455443
No 374
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.43 Score=46.86 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.++++.++||+|||.+.-. ++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 3699999999999987444 5555554
No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.57 E-value=0.06 Score=53.77 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 109 PTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
+.+.|.+.+..+++... +++.+|||||||+. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 37788888887776554 77789999999987 6667777665
No 376
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.16 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
..+|+.||.|+|||..+.. +...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~-lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI-LAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHH-HHHHhcC
Confidence 3579999999999987555 4555544
No 377
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.42 E-value=0.34 Score=52.27 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
..++++.+|+|+|||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999986443
No 378
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.40 E-value=0.69 Score=50.18 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.++|+.+|+|+|||..+-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999986443
No 379
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.39 E-value=0.23 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.++++.+|+|+|||+++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 44799999999999987543
No 380
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.38 E-value=0.57 Score=40.51 Aligned_cols=143 Identities=20% Similarity=0.170 Sum_probs=73.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH-HHHHHHHHHhcCCCCceEEEEECCccChhhHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA-VQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 204 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~-~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~ 204 (491)
+++.-..|-|||++++--++..+-. |.+|+|+-=-+-=. .--...+.++.. .+....+-.+.....+..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~~~--~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKFGL--GVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhhcc--ceeEEecCCceeCCCcCc
Confidence 5556778889999987766666544 77887774222110 001122233311 122211111111111100
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHHHHHH
Q 011188 205 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 282 (491)
Q Consensus 205 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 282 (491)
. .++ ......+..... .+.-.++++||+||....+..++ ...+..++..-|+...+|+.--..|+.+.+.+
T Consensus 101 ~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred H----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 0 022 222222222111 11123689999999998777663 35666667766677777766666788877776
Q ss_pred HHH
Q 011188 283 RQY 285 (491)
Q Consensus 283 ~~~ 285 (491)
...
T Consensus 174 DlV 176 (198)
T COG2109 174 DLV 176 (198)
T ss_pred HHH
Confidence 643
No 381
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.35 E-value=0.43 Score=47.34 Aligned_cols=134 Identities=16% Similarity=0.060 Sum_probs=74.4
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhh-cCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 011188 106 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVN-AQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 184 (491)
Q Consensus 106 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~-~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 184 (491)
+..+-..|.++.-..-.|+. .|.+=.|||||...++-+ .++. .+ ...+++|.+-|+.|+.++...+.+|+.
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~kn------Pd~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKN------PDSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCC------CCceEEEEeehHHHHHHHHHHHHHHHH
Confidence 44556667776655555555 567889999998644433 3332 22 266799999999999999888877642
Q ss_pred C--------CCceEEEEECCccChhhHHHhhcC---CcEEEeC----hHHHHHHHhccCccccCccEEEEcccccccc
Q 011188 185 S--------SKIKSTCIYGGVPKGPQVRDLQKG---VEIVIAT----PGRLIDMLESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 185 ~--------~~~~v~~~~~g~~~~~~~~~~~~~---~~Iiv~T----~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
. ..+.+.--.||............- ..+-++- -.-+...+.....+..-+++|.+||++-+.+
T Consensus 232 ~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP~ 309 (660)
T COG3972 232 MRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFPQ 309 (660)
T ss_pred HHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCCH
Confidence 1 112233333444333222221111 1122211 1112222222233356789999999997654
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.34 E-value=0.53 Score=43.95 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc---cHHHHHHHHHHHHHh
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP---TRELAVQIQQESTKF 182 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P---t~~L~~q~~~~~~~~ 182 (491)
.+.-+++.+++|+|||...+--+...+.. +.++++++- ...+..++......+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 34568999999999997644433333222 556888773 233444444444444
No 383
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.15 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+|+.+|.|+|||.++.. +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999987554 555554
No 384
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.12 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+|+.||+|+|||..+.+ +...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~-lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI-LAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhc
Confidence 79999999999987555 444443
No 385
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.14 Score=55.00 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=64.1
Q ss_pred HHHHHHHHhhccCCeEEEEeCCcccHHHHHHHHHhCC-----CceEE-EcCCCCHHHHHHHHHHHhCCCCcEEEEecc-c
Q 011188 319 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-----WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDV-A 391 (491)
Q Consensus 319 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~-i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~ 391 (491)
..++.+.-.. .++++++.+||..-+.+.++.|.+.. +.+.. +|+.++..++++++++|.+|+.+|||+|+. +
T Consensus 114 g~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 114 GLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 3344444333 45799999999999988888887542 44333 999999999999999999999999999965 4
Q ss_pred cccCCC-C--CCCEEEEcC
Q 011188 392 ARGLDV-K--DVKYVINYD 407 (491)
Q Consensus 392 ~~Gidi-~--~~~~VI~~~ 407 (491)
..-.+. . ..++|+.-|
T Consensus 193 ~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 193 SKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HhhHHHhcccCCCEEEEcc
Confidence 444432 2 356666544
No 386
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.23 E-value=0.21 Score=56.35 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=64.4
Q ss_pred hccCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCCCCCCCE
Q 011188 328 IMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKY 402 (491)
Q Consensus 328 ~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi~~~~~ 402 (491)
...+.+++|.+||+.-|..+++.+++. ++.+..+++..+..++..+++...+|..+|+|+| ..+...+.+.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 345678999999999999998888753 4567789999999999999999999999999999 45555677778888
Q ss_pred EEE
Q 011188 403 VIN 405 (491)
Q Consensus 403 VI~ 405 (491)
+|.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 773
No 387
>PRK04328 hypothetical protein; Provisional
Probab=94.22 E-value=0.37 Score=44.67 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=34.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.|..+++.+++|+|||..++--+...+.. +..+++++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 34568899999999997544434443333 55677776 3345556666666665
No 388
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.17 E-value=0.16 Score=49.63 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+..+++++|||||||+. +-.++.++... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45689999999999975 33345444321 13456666655554
No 389
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.17 E-value=0.25 Score=51.92 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=18.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|++||.|+|||.++.+ +...+..
T Consensus 40 a~Lf~Gp~GvGKttlA~~-lAk~L~c 64 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV-FAKAVNC 64 (620)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhCC
Confidence 488999999999987655 4444443
No 390
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.13 E-value=0.57 Score=41.31 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=23.1
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEe
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 270 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 270 (491)
.....++||||+|.+.... ...+...+...++...+|++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 3567899999999986432 23344444444444444443
No 391
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.3 Score=50.17 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=26.5
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEec
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 271 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 271 (491)
....+++||||||.|.... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3578899999999986533 344555566555566555554
No 392
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.12 E-value=0.16 Score=49.12 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.1
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+..+++++++++||||||+. +-+++.++.. ..+++.+=.+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 34678999999999999974 4444444332 4566666566565
No 393
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.31 Score=48.04 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.1
Q ss_pred CccEEEEccccccccCC-cHHHHHHHHhhcC-CCCceEEeccCCcHHHH
Q 011188 233 RVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVE 279 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 279 (491)
+++++++|.++.+.... ....+-.+...+. ...|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 67899999999877653 3344444444443 34478888877776654
No 394
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.06 E-value=1 Score=42.71 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=72.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 205 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ 205 (491)
+++++-.|+|||++..- +..++.. ++.+|++.+--.--|- -.++++.++...++.+..-..|.
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~-------~g~~VllaA~DTFRAa-AiEQL~~w~er~gv~vI~~~~G~-------- 204 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQ-------QGKSVLLAAGDTFRAA-AIEQLEVWGERLGVPVISGKEGA-------- 204 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHH-------CCCeEEEEecchHHHH-HHHHHHHHHHHhCCeEEccCCCC--------
Confidence 77889999999987433 3344443 3777777765322221 22334444444445544321111
Q ss_pred hhcCCcEEEeChHH-HHHHHhccCccccCccEEEEccccccccCC-cHHHHHHHHhhcCCCC------ceEEeccCCcHH
Q 011188 206 LQKGVEIVIATPGR-LIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDR------QTLYWSATWPKE 277 (491)
Q Consensus 206 ~~~~~~Iiv~T~~~-l~~~l~~~~~~l~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~~~~~------~~i~~SAT~~~~ 277 (491)
.|.. ..+-++... .+++++|++|=|=|+-+.. .-..+.+|.+-+.+.. -++.+-||...+
T Consensus 205 ----------DpAaVafDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 205 ----------DPAAVAFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ----------CcHHHHHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 1211 122233211 3478899999999887643 4466667766665443 334447998776
Q ss_pred HHHHHHHH
Q 011188 278 VEHLARQY 285 (491)
Q Consensus 278 ~~~~~~~~ 285 (491)
...-++.|
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 65555554
No 395
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.06 E-value=0.6 Score=47.12 Aligned_cols=40 Identities=28% Similarity=0.165 Sum_probs=25.2
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEc
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 166 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 166 (491)
+..|.-+++.|++|+|||..++-.+...... .+..|++++
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~-------~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR-------EGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 3345568889999999997644433333222 255677776
No 396
>PRK06620 hypothetical protein; Validated
Probab=93.99 E-value=0.14 Score=46.31 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
..+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 397
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=1.4 Score=42.65 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+.+|+.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999974
No 398
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.92 E-value=0.084 Score=54.18 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 107 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|+.+|.+.+..+. .|+-.|+.+|||+|||+..+-.++.++..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 389999999887655 58889999999999999877777776643
No 399
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.92 E-value=0.7 Score=47.46 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=76.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCce-EEEEECCccChh
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIK-STCIYGGVPKGP 201 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~-v~~~~~g~~~~~ 201 (491)
+-.+..-|---|||+. +.|++..++.. -.+-++.++++-+--++-+.+++.. +.++.+-+ +...
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~-------- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN-------- 268 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--------
Confidence 4577778999999964 77787777762 3478899999999877776666552 22222211 1111
Q ss_pred hHHHhhcCCcEEEeChHHH-----HHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccC
Q 011188 202 QVRDLQKGVEIVIATPGRL-----IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 273 (491)
Q Consensus 202 ~~~~~~~~~~Iiv~T~~~l-----~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 273 (491)
++..|.+.-|+.= ......+...-++++++++||||-+. ...+..++-.+ .++.++|+.|.|
T Consensus 269 ------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 ------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1123333333221 11112233345688999999999765 34555555444 367788888877
No 400
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.92 E-value=0.35 Score=48.99 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCCcHHHHHHHHHhhc------C----CcEEEEcCCCChHHHHHH-HHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 011188 107 FEPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 175 (491)
Q Consensus 107 ~~~~~~Q~~~i~~i~~------~----~~~ii~~~TGsGKT~~~~-~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 175 (491)
..+-|||.-++-.++- + +..+|..|-+-|||..+. +.+...+... ..+..+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3688999999988772 2 247888999999996544 3222333321 3467799999999988888
Q ss_pred HHHHHHhcCCCC-ceEEEEECCccChhhHHHhhcCCc---EEEeChHHHHHHHhc--cCccccCccEEEEccccccccCC
Q 011188 176 QQESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVE---IVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMG 249 (491)
Q Consensus 176 ~~~~~~~~~~~~-~~v~~~~~g~~~~~~~~~~~~~~~---Iiv~T~~~l~~~l~~--~~~~l~~~~~lIiDEah~~~~~~ 249 (491)
...++....... +.. ......+ |.+.--...+..+.. ...+-.+..+.|+||.|...+.+
T Consensus 135 F~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~ 200 (546)
T COG4626 135 FNPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE 200 (546)
T ss_pred hHHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH
Confidence 877775432211 000 0000111 111111111122222 22334467899999999876542
Q ss_pred cHHHHHHHHhhc--CCCCceEEecc
Q 011188 250 FEPQIKKILSQI--RPDRQTLYWSA 272 (491)
Q Consensus 250 ~~~~~~~i~~~~--~~~~~~i~~SA 272 (491)
..+..+..-+ +++.+++..|-
T Consensus 201 --~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 --DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHhhhccCcCceEEEEec
Confidence 3444443333 45667777664
No 401
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.88 E-value=0.096 Score=49.56 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+++++|||+|||+....
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588889999999986544
No 402
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.84 E-value=0.04 Score=48.06 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCcc--ccCccEEEEccccccccC
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTN--LRRVTYLVLDEADRMLDM 248 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~--l~~~~~lIiDEah~~~~~ 248 (491)
.+.....++|+|+++..|++-....... ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3455567899999999887654332221 234468999999998753
No 403
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.83 E-value=0.099 Score=50.70 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.6
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 172 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 172 (491)
+..+++++++++||||||+. +-+++..+.. ..+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 44678999999999999974 3334433221 34577777777763
No 404
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.80 E-value=0.75 Score=51.48 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.3
Q ss_pred CccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcH
Q 011188 233 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 276 (491)
Q Consensus 233 ~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 276 (491)
.--+||||++|.+-+......+..++...+++..+|+.|-+.++
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34579999999986555566888888888888888888877543
No 405
>PRK06904 replicative DNA helicase; Validated
Probab=93.46 E-value=1.2 Score=45.43 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC-ccChh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG-VPKGP 201 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g-~~~~~ 201 (491)
|.=+++.|.||.|||..++- ++.++... .+..|+|++.- .-..|+...+-..... +....+..+ .-...
T Consensus 221 G~LiiIaarPg~GKTafaln-ia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMN-LCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHH
Confidence 44478889999999975433 33333211 25567777643 3344444443322212 111112222 11112
Q ss_pred hH-------HHhhcCCcEEEe-----ChHHHHHHHhccCccccCccEEEEcccccccc
Q 011188 202 QV-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 202 ~~-------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
.+ ..+....++.|. |+..+.............+++||||=.+.|..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 22 122233446652 44455433322111112578999999987753
No 406
>PHA00012 I assembly protein
Probab=93.43 E-value=2.4 Score=40.33 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.++.+..|+|||+.++.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999877766666554
No 407
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.41 E-value=0.39 Score=44.79 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
.++-+|||+||+- ++..++...... .-...|++++|.+.
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~-P~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQ-PPPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCccc-CCCCceEEECCCCC
Confidence 5677999999995 333333322111 12445899999873
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.40 E-value=1.9 Score=41.46 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=32.2
Q ss_pred cCccEEEEccccccccCC-cHHHHHHHHhhc------CCCCceEEeccCCcHHHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLDMG-FEPQIKKILSQI------RPDRQTLYWSATWPKEVEHLARQY 285 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~-~~~~~~~i~~~~------~~~~~~i~~SAT~~~~~~~~~~~~ 285 (491)
.++++||+|=+-++.... ....+..+.+.+ .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 468899999998765332 234555554432 244457888898755444444444
No 409
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=93.35 E-value=0.11 Score=45.25 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 169 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 169 (491)
.++.+|++||||...+- .+..+.. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~-~~~~~~~-------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIR-RIHRYEI-------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHHHH-------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHH-HHHHHHh-------CCCeEEEEEecc
Confidence 57889999999987333 4444333 267899998863
No 410
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.28 E-value=0.63 Score=42.36 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+.-+++.+++|+|||..++--+...+.. +..+++++.. +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4568899999999996544333333332 5668887664 45677777777664
No 411
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.27 E-value=0.12 Score=56.53 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=72.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCc-EEEEeccccccCCCCCCCEEEEcCCC
Q 011188 331 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDVAARGLDVKDVKYVINYDFP 409 (491)
Q Consensus 331 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gidi~~~~~VI~~~~p 409 (491)
..++|||+.-....+-+...+...++....-.++ ++-...+..|++ ++ +|+-+...+.|+|+-++.||+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 3589999988777777777776555444333332 223345556655 44 55677889999999999999999999
Q ss_pred CChhHHHHhhhhcccCCCcceEE
Q 011188 410 GSLEDYVHRIGRTGRAGAKGTAY 432 (491)
Q Consensus 410 ~s~~~~~Qr~GR~gR~g~~g~~~ 432 (491)
-++..-.|.+||+.|.|++-..+
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchh
Confidence 99999999999999999885543
No 412
>PRK13764 ATPase; Provisional
Probab=93.25 E-value=0.21 Score=51.93 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
..+++++++|||||||+. +.+++.++.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~-------~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD-------MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh-------CCCEEEEECCCccc
Confidence 467899999999999975 4445555543 23444455445555
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.24 E-value=0.36 Score=50.92 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=25.5
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccC
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 273 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 273 (491)
....+++||||+|.+.... ...+.+.+...+.... +++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeE-EEEEeC
Confidence 4578899999999986433 3345555555544443 444444
No 414
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.21 E-value=0.61 Score=44.79 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=34.7
Q ss_pred EEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEecc
Q 011188 212 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 212 Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
|-|-....+.+.+..... ....+++|||++|.|.... ...+.+++...+ ...+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 334444445555554333 3578999999999986543 455666666655 554555444
No 415
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=0.21 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+|+.||.|+|||.++.+ +...+.
T Consensus 43 YLF~GP~GtGKTt~Ari-LAk~Ln 65 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI-FANALN 65 (725)
T ss_pred EEEECCCCCcHHHHHHH-HHHHhc
Confidence 78999999999987555 334433
No 416
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.17 E-value=0.18 Score=52.52 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+..|+.+.+++|+|||||+.
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44678899999999999973
No 417
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.17 E-value=0.5 Score=47.93 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+|+.||.|+|||.++.. +...+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~-lAk~l~c 65 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI-FAKALNC 65 (451)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHhcC
Confidence 478999999999987554 4455443
No 418
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.16 E-value=0.23 Score=47.52 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
.|.-+.+.+|+|+|||..++. ++..... .+..++++..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~-~~~~~~~-------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALH-AIAEAQK-------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHH-------cCCcEEEEcccchhHH
Confidence 345688999999999976554 3333332 2566778866554444
No 419
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.15 E-value=0.54 Score=48.27 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 115 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 115 ~~i~~i~~-----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
..+..++. |.-+++.+|+|+|||+..+.-+...+. ++.++++++ ..|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555554 346899999999999764443333222 266788877 4577778888888775
No 420
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.15 E-value=1.7 Score=42.69 Aligned_cols=146 Identities=17% Similarity=0.115 Sum_probs=63.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH---HHHHHHHhcCC-CCceEEEEECCccChhh
Q 011188 127 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ---IQQESTKFGAS-SKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 127 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q---~~~~~~~~~~~-~~~~v~~~~~g~~~~~~ 202 (491)
++.++.|+|||....+.++.++...+ ....++++.....+... ....+..+... ..+.........-.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII--- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE---
Confidence 46789999999988777777777643 13456666444455554 22333333333 12222111111000
Q ss_pred HHHhhcCCcEEEeChHHH--HHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC--cHHH
Q 011188 203 VRDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW--PKEV 278 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l--~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~--~~~~ 278 (491)
+.++..|.+.+.+.- ..-+. -..++++++||+-.+.+..+...+........... .+++|.|. ....
T Consensus 73 ---~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 73 ---LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWF 143 (384)
T ss_dssp ---ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred ---ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCce
Confidence 134455666663321 01111 14678999999988765444444333333332222 22444433 3345
Q ss_pred HHHHHHHccCC
Q 011188 279 EHLARQYLYNP 289 (491)
Q Consensus 279 ~~~~~~~~~~~ 289 (491)
..+........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55555555444
No 421
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.12 E-value=2.1 Score=42.02 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
.+.+-+.|+.|.|||+. +-++.....- ..+.+ ++--+...++.+.+.++... .
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~~~-----------~----- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLRGQ-----------D----- 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHhCC-----------C-----
Confidence 45699999999999973 3333222210 01112 23346666677777665300 0
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc-CCCCceEEeccCCcHHH
Q 011188 203 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEV 278 (491)
Q Consensus 203 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 278 (491)
+- ...+.+.+ .....+|+|||+|- .|.+-.-.+..++..+ ....-+|+.|-+.|+++
T Consensus 115 --------~~----l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 --------DP----LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --------cc----HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00 00111111 23456899999993 3333234444454443 45566777777777654
No 422
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.02 E-value=1.2 Score=49.08 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHhh----c--CCcEEEEcCCCChHHHHHHH
Q 011188 113 QAQGWPMAL----K--GRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 113 Q~~~i~~i~----~--~~~~ii~~~TGsGKT~~~~~ 142 (491)
|..-+..+. . ..+.++.+|.|+|||..+-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 666665544 2 24799999999999986433
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.99 E-value=0.8 Score=46.46 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
|.-+++.+++|+|||+..+. ++..+.. .+.+++++..- +-..|+.....+++
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 45689999999999976444 3333332 14568888764 45567766666654
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.99 E-value=0.9 Score=50.18 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.++.+|+|+|||..+-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 4799999999999986443
No 425
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.98 E-value=0.59 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.8
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHH
Q 011188 118 PMALKGRDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 118 ~~i~~~~~~ii~~~TGsGKT~~~~~ 142 (491)
+.+..+.|++..+|+|+|||..|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 5666789999999999999976553
No 426
>PF05729 NACHT: NACHT domain
Probab=92.98 E-value=0.73 Score=39.29 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
-++|.|+.|+|||....- ++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~-~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK-LAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHH-HHHHHHh
Confidence 368899999999976433 4444444
No 427
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.92 E-value=0.11 Score=47.73 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.1
Q ss_pred EEEEcCCCChHHHH
Q 011188 126 LIGIAETGSGKTLA 139 (491)
Q Consensus 126 ~ii~~~TGsGKT~~ 139 (491)
+++.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999985
No 428
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.87 E-value=0.57 Score=40.46 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=39.1
Q ss_pred cCccEEEEccccccccCCc--HHHHHHHHhhcCCCCceEEeccCCcHHHHHHHH
Q 011188 232 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 283 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 283 (491)
..+++||+||+-...+.++ ...+..+++..++...+|+.--..|+.+.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5789999999998887774 356777777777777777776777777766554
No 429
>PRK10436 hypothetical protein; Provisional
Probab=92.81 E-value=0.24 Score=50.07 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 109 PTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~--~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+.+.|.+.+..++. +.-+++++|||||||+. +..++.++.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 34556666665543 33488999999999986 444566654
No 430
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.79 E-value=0.39 Score=49.10 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHH
Q 011188 123 GRDLIGIAETGSGKTLA 139 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~ 139 (491)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999985
No 431
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.70 E-value=0.56 Score=43.80 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc---cHHHHHHHHHHHHHhcCCCCceEEEEECCccC
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP---TRELAVQIQQESTKFGASSKIKSTCIYGGVPK 199 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P---t~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~ 199 (491)
+.=+++.|.||.|||..++-.+...+.. .+..|++++. ..+++..+....... . ...+..+...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~-------~~~~vly~SlEm~~~~l~~R~la~~s~v----~--~~~i~~g~l~ 85 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN-------GGYPVLYFSLEMSEEELAARLLARLSGV----P--YNKIRSGDLS 85 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT-------TSSEEEEEESSS-HHHHHHHHHHHHHTS----T--HHHHHCCGCH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh-------cCCeEEEEcCCCCHHHHHHHHHHHhhcc----h--hhhhhccccC
Confidence 3458888999999997655544444443 1467888875 344444443333221 1 0001111111
Q ss_pred hhhH-------HHhhcCCcEE-EeC----hHHHHHHHhccCccccCccEEEEccccccccC
Q 011188 200 GPQV-------RDLQKGVEIV-IAT----PGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 248 (491)
Q Consensus 200 ~~~~-------~~~~~~~~Ii-v~T----~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~ 248 (491)
...+ ..+.. ..+. ..+ ++.+...+........++++||||=.|.+...
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 1111 11222 2333 333 34454444432222267889999999987764
No 432
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.68 E-value=0.28 Score=45.91 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhhc-C-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH
Q 011188 110 TPIQAQGWPMALK-G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 170 (491)
Q Consensus 110 ~~~Q~~~i~~i~~-~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 170 (491)
.+.|.+.+..++. . ..++++++||||||.. +..++.++.. ...+++.+-...|
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~-------~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT-------PEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC-------CCCeEEEECCCce
Confidence 4446666655553 3 3488999999999975 3435555432 1345555554444
No 433
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.54 E-value=0.47 Score=46.57 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=18.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.+++.||.|+|||..+.. +...+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l~~ 62 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKALNC 62 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 478999999999976433 4555443
No 434
>PRK09354 recA recombinase A; Provisional
Probab=92.52 E-value=0.35 Score=46.77 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
|.-+.+.+|+|+|||..++..+...... +..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 4568899999999998755544433322 667888887665554
No 435
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.49 E-value=1.1 Score=49.32 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.++++.+|+|+|||..+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 4799999999999986544
No 436
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.47 E-value=0.43 Score=45.77 Aligned_cols=44 Identities=23% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 174 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 174 (491)
|.-+.+.+|+|+|||..++..+... .. .+..++++.+-..+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~-~~-------~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA-QK-------LGGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCCEEEECccccHHHH
Confidence 4568899999999997655433333 22 25678888876655543
No 437
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.42 E-value=0.81 Score=46.88 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=62.1
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc-ccccC-------CCCCCC
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-AARGL-------DVKDVK 401 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gi-------di~~~~ 401 (491)
.++.+||.+|+++-+......|+..++.+..++++.+..++..++.....++.+++++|.- +.... ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 3567999999999999999999999999999999999999999999999999999999942 22222 345566
Q ss_pred EEEE
Q 011188 402 YVIN 405 (491)
Q Consensus 402 ~VI~ 405 (491)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 6664
No 438
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.34 Score=49.44 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 011188 83 KPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 83 ~~~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 139 (491)
-|-.+|++.+--+.+...|.-. .+. +|-+.+++-. -.-..+|+++|+|+|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK--~pd~~k~lGi-~~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIK--RPDLFKALGI-DAPSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhcc--CHHHHHHhCC-CCCCceEEeCCCCccHHHH
Confidence 3456888887666666655422 222 2233333321 1245699999999999985
No 439
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.21 E-value=0.71 Score=50.88 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~ 142 (491)
.+.++.+|+|+|||..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999986433
No 440
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.18 E-value=0.26 Score=47.26 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 011188 124 RDLIGIAETGSGKTLAY 140 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~ 140 (491)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999753
No 441
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.15 E-value=0.78 Score=50.63 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=68.6
Q ss_pred HHHHhhccCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEe-ccccccCCC
Q 011188 323 KLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDV 397 (491)
Q Consensus 323 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gidi 397 (491)
...+....+++|.|.|||---|+.-++.+++ ..+++..+..=.+.++...+++...+|+++|+|.| ..++.+|-+
T Consensus 635 AAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F 714 (1139)
T COG1197 635 AAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF 714 (1139)
T ss_pred HHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE
Confidence 3445566778999999998777666666654 35567788888899999999999999999999999 788999999
Q ss_pred CCCCEEE
Q 011188 398 KDVKYVI 404 (491)
Q Consensus 398 ~~~~~VI 404 (491)
.++-.||
T Consensus 715 kdLGLlI 721 (1139)
T COG1197 715 KDLGLLI 721 (1139)
T ss_pred ecCCeEE
Confidence 9999888
No 442
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.13 E-value=1.2 Score=40.71 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=19.5
Q ss_pred hhcCC-cEEEEcCCCChHHHHHHHHHHHHh
Q 011188 120 ALKGR-DLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 120 i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+..++ -+.++++.|||||+..- +++..+
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 44555 57888999999998755 344433
No 443
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.08 E-value=0.55 Score=51.00 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHH
Q 011188 124 RDLIGIAETGSGKTLA 139 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~ 139 (491)
+.+++.+|+|+|||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999985
No 444
>PRK08506 replicative DNA helicase; Provisional
Probab=92.00 E-value=1.5 Score=44.92 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
|.-+++.|.||.|||..++- ++.++.. .+..|++++.- .-..|+...+-..... +....+..+.-....
T Consensus 192 G~LivIaarpg~GKT~fal~-ia~~~~~-------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLN-MALKALN-------QDKGVAFFSLE-MPAEQLMLRMLSAKTS--IPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHHHHHH-HHHHHHh-------cCCcEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHHhcCCCCHHH
Confidence 34588889999999976444 3333332 25567777642 3344444444322111 111111111111112
Q ss_pred H-------HHhhcCCcEEEe-----ChHHHHHHHhccCccccCccEEEEcccccccc
Q 011188 203 V-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 247 (491)
Q Consensus 203 ~-------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~ 247 (491)
+ ..+.. ..+.|- |+..+...+.........+++||||=.+.|..
T Consensus 261 ~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 261 WERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 2 12222 345442 34444443332111123578999999997753
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.95 E-value=0.4 Score=42.27 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHH
Q 011188 108 EPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~ 139 (491)
.+.+-|.+.+.... .++.+++++|||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45666777776654 577899999999999975
No 446
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=0.65 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+++.||.|+|||.++.+ +...+.
T Consensus 41 yLf~Gp~G~GKTtlAr~-lAk~L~ 63 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI-LAKVLN 63 (486)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhc
Confidence 67899999999987555 334433
No 447
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.91 E-value=0.62 Score=42.55 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=16.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+|++++|||||+.. +.+++.+-.
T Consensus 130 viiVGaTGSGKSTt-mAaMi~yRN 152 (375)
T COG5008 130 VIIVGATGSGKSTT-MAAMIGYRN 152 (375)
T ss_pred EEEECCCCCCchhh-HHHHhcccc
Confidence 78889999999986 444555433
No 448
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.90 E-value=0.44 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=18.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
-+|+.||.|+|||.++.+ +...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 378999999999987555 444444
No 449
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.90 E-value=0.31 Score=44.98 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred cEEEEcCCCChHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLL 142 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~ 142 (491)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 599999999999986544
No 450
>PRK07004 replicative DNA helicase; Provisional
Probab=91.89 E-value=1 Score=45.80 Aligned_cols=37 Identities=24% Similarity=0.087 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCCCCCCCCEEEEEcc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~~~~~vlil~P 167 (491)
|.-+++.|.+|+|||..++- ++.++ .. .+..+++++.
T Consensus 213 g~liviaarpg~GKT~~al~-ia~~~a~~-------~~~~v~~fSl 250 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMN-IGEYVAVE-------YGLPVAVFSM 250 (460)
T ss_pred CceEEEEeCCCCCccHHHHH-HHHHHHHH-------cCCeEEEEeC
Confidence 44588889999999975443 33333 22 2556777753
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.82 E-value=1.6 Score=40.09 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCC----CCCCCEEEEEc---ccHHHHHHHHHHH
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLA---PTRELAVQIQQES 179 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~----~~~~~~vlil~---Pt~~L~~q~~~~~ 179 (491)
-.++.+|.|+|||+.++-.++......+... ...+.+|+|++ |..++..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~ 64 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAIL 64 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHH
Confidence 3688999999999775554443332222221 22356788888 4444444444333
No 452
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.77 E-value=4.7 Score=43.23 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=65.5
Q ss_pred eEEEEeCCcccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHHhCC--------CCcEEEEeccccccCCC
Q 011188 333 RILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAG--------KSPIMTATDVAARGLDV 397 (491)
Q Consensus 333 ~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~i~~~~~~~~r~~~~~~f~~g--------~~~vLvaT~~~~~Gidi 397 (491)
.+|||.++....+++...++.. +.+-..+ .=-+..+-.+++.+|-+. ..-+.||-.-.++|+|+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999998888886665432 1122222 212334445556665432 22345666888999999
Q ss_pred CC--CCEEEEcCCCC--------------------------------------ChhHHHHhhhhcccCCCcceEEEEeCc
Q 011188 398 KD--VKYVINYDFPG--------------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTA 437 (491)
Q Consensus 398 ~~--~~~VI~~~~p~--------------------------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 437 (491)
.+ .+.||..++|. -.....|.+||+-|..++=.++++++.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeec
Confidence 75 66888888765 123456999999999666444445554
No 453
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.76 E-value=0.19 Score=51.53 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=39.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
.++++.||||||||..+++|.+.. . ...++|.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~--------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y--------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c--------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999987643 1 1247888898899887777676654
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.75 E-value=0.64 Score=46.26 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAY 140 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~ 140 (491)
.+.+++.+|+|+|||+.+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 357999999999999853
No 455
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.75 E-value=1.2 Score=48.51 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 011188 122 KGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~ 139 (491)
.++.+++.+|+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 356799999999999975
No 456
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.70 E-value=0.46 Score=43.57 Aligned_cols=103 Identities=11% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhCCC----CcEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHhhhhc-ccCCCcc
Q 011188 355 GWPALSIHGDKSQAERDWVLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT-GRAGAKG 429 (491)
Q Consensus 355 ~~~~~~i~~~~~~~~r~~~~~~f~~g~----~~vLvaT~~~~~Gidi~~~~~VI~~~~p~s~~~~~Qr~GR~-gR~g~~g 429 (491)
++.+..++++.+.+. -.|.++. ..|+|.=+.++||+.++++.+..+...+.+..++.||.--- -|.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455666665544322 2233332 56888889999999999999999999999889998884322 2455567
Q ss_pred eEEEEeCcccHHHHHHHHHHHHHhCCCCCHHHHhhcc
Q 011188 430 TAYTFFTAANARFAKELITILEEAGQKVSPELAAMGR 466 (491)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 466 (491)
.|-+++++.-......+.+.. +++.+++..++.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~----e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAE----EELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 888888876555555444443 334455555543
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.69 E-value=0.42 Score=44.17 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLA 139 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~ 139 (491)
+-.|+.+++.+|.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 458
>PRK08840 replicative DNA helicase; Provisional
Probab=91.68 E-value=2.3 Score=43.23 Aligned_cols=52 Identities=17% Similarity=0.008 Sum_probs=28.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 179 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 179 (491)
+..|.=+++.|.||.|||..++-.+...... .+..++|++.- .-..|+...+
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~-------~~~~v~~fSlE-Ms~~ql~~Rl 265 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD-------QDKPVLIFSLE-MPAEQLMMRM 265 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh-------CCCeEEEEecc-CCHHHHHHHH
Confidence 3344557888999999997654323332222 25567777643 2334444443
No 459
>PRK09087 hypothetical protein; Validated
Probab=91.57 E-value=0.62 Score=42.45 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=22.7
Q ss_pred cEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCC
Q 011188 235 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 274 (491)
Q Consensus 235 ~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 274 (491)
++|++|++|.+.. -...+..++..+......++++++.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3799999997642 2455666666555433345555553
No 460
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.57 E-value=0.36 Score=49.35 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHhhcCC-c-EEEEcCCCChHHHHHHHHHHHHh
Q 011188 109 PTPIQAQGWPMALKGR-D-LIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~~-~-~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+.+-|.+.+..++... . +++++|||||||+. +..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 3666777777766543 3 78999999999976 33345544
No 461
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=1.5 Score=44.08 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHH----hhc----C----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCC
Q 011188 91 VGFPDYVMQEISKAGFFEPTPIQAQGWPM----ALK----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 158 (491)
Q Consensus 91 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~----i~~----~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 158 (491)
++.+++.++.+...|+..-.+.=.+.+.. +.+ . -.+++.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 46777777777777766554444444432 111 1 2489999999999964333222 123
Q ss_pred CCEEEEEcccH
Q 011188 159 GPIVLVLAPTR 169 (491)
Q Consensus 159 ~~~vlil~Pt~ 169 (491)
-|.+=|++|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 67777888854
No 462
>PF12846 AAA_10: AAA-like domain
Probab=91.48 E-value=0.32 Score=46.39 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHH
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 173 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 173 (491)
+.++++.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999998755 45555544 2677888877755443
No 463
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.47 E-value=0.76 Score=45.21 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=20.8
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 120 ALKGRDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 120 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+-.|+.+++.+|+|+|||..... +...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 33688899999999999975333 444433
No 464
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.42 E-value=1.6 Score=45.24 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 110 TPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 110 ~~~Q~~~i~~i~~-------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
|--|.+|+..+.. ..-+-+.|.-|-||+.+.-+.+...+... -..+.|.+|+-+-..-+.+.+-+-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-------ysnIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-------YSNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-------cceEEEcCCChHHHHHHHHHHHcc
Confidence 5568888765432 12377789999999988666665554431 233667788877665555554432
Q ss_pred cCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHHHHHHH-----------------hccCccccCccEEEEcccccc
Q 011188 183 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML-----------------ESHNTNLRRVTYLVLDEADRM 245 (491)
Q Consensus 183 ~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l-----------------~~~~~~l~~~~~lIiDEah~~ 245 (491)
...+++.-.. ..+||-.|..-+...+ -.+...+...+++|+|||-.+
T Consensus 328 fDaL~Yqeh~----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAI 391 (1011)
T KOG2036|consen 328 FDALEYQEHV----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAI 391 (1011)
T ss_pred hhhhcchhhc----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcC
Confidence 2222211000 0112222211111111 111223567789999999987
Q ss_pred ccCCcHHHHHHHHhhcCCCCceEEeccCCc
Q 011188 246 LDMGFEPQIKKILSQIRPDRQTLYWSATWP 275 (491)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 275 (491)
. .+.+++++ .+.+++|+.|++
T Consensus 392 P----Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 392 P----LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred C----HHHHHHhh-----cceeEEEeeccc
Confidence 6 56666664 567899999964
No 465
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=1.4 Score=46.16 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=31.2
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEecc
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
+++..++|+|||-.-+|..-+..+.+.+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5677899999999999887788888888777666 4444433
No 466
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.39 E-value=0.23 Score=51.95 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=40.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 183 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 183 (491)
+++++.||||||||..+++|-+... +..++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4689999999999999999988653 2348899999999988887777654
No 467
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.30 E-value=0.15 Score=50.66 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
++++.|+||||||..+++|-+... ...++|+-|.-++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888866431 235888889989987776666554
No 468
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.28 E-value=2.1 Score=43.39 Aligned_cols=38 Identities=24% Similarity=0.067 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcc
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 167 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 167 (491)
|.-+++.|++|+|||..++--+...+.. .+..+++++.
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-------~g~~vl~~Sl 232 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-------EGKPVAFFSL 232 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCeEEEEeC
Confidence 4458889999999996544333332322 1456777764
No 469
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.19 E-value=1.5 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
..+.+++++||.-.-+|......+.+++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3466799999999888877677777777766
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.16 E-value=0.3 Score=45.89 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=29.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 121 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 121 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
..+.+++++|+||||||.. +-.++..+.. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~-------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP-------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT-------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc-------cccceEEeccccce
Confidence 4467899999999999975 4445555443 13567777766665
No 471
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.12 E-value=0.45 Score=49.76 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 109 PTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 109 ~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
+.+.|.+.+..++.. .-+++++|||||||+. +..++.++.
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 356677777666543 3478999999999976 444566553
No 472
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.12 E-value=0.33 Score=40.88 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=58.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
..+++.+++|+|||+.. .-+...+.... -+..=|++| ++++-++..++++.-+..|....-..
T Consensus 6 mki~ITG~PGvGKtTl~-~ki~e~L~~~g------~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~ 68 (179)
T COG1618 6 MKIFITGRPGVGKTTLV-LKIAEKLREKG------YKVGGFITP----------EVREGGKRIGFKIVDLATGEEGILAR 68 (179)
T ss_pred eEEEEeCCCCccHHHHH-HHHHHHHHhcC------ceeeeEEee----------eeecCCeEeeeEEEEccCCceEEEEE
Confidence 35889999999999863 33555665532 112235555 23455566667766555432211000
Q ss_pred HHhhcCCcEEEeChHHHHHHHhc-----cCccccCccEEEEcccccccc--CCcHHHHHHHHhh
Q 011188 204 RDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLD--MGFEPQIKKILSQ 260 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~-----~~~~l~~~~~lIiDEah~~~~--~~~~~~~~~i~~~ 260 (491)
... . ..-|+-+....+.++. -...+..-+++|+||+--|-. ..|...+..++..
T Consensus 69 ~~~-~--~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGF-S--RPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCC-C--CcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 1 1111222111111111 011123458999999997653 3466666666543
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.09 E-value=0.35 Score=43.11 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 126 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 126 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+++++|||||||+. +..++.++... .+.+++.+....++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCccc
Confidence 68899999999986 33345554431 13455665554443
No 474
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=91.06 E-value=15 Score=35.41 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=41.0
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhCCCceEEE-----cCCCCHHHHHHHHHHHhCCCCcEEEEec
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMDGWPALSI-----HGDKSQAERDWVLSEFKAGKSPIMTATD 389 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~i-----~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 389 (491)
.+.+++.||. ...-+.+.+.|+..|+.+... |-..+..+-..+....+... .+|+|.
T Consensus 226 ~~~~v~a~sG-Ig~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 226 KGKPVLAFSG-IGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred cCCeeEEEEE-cCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 4567888875 455667777888888776632 77788888888777766544 888884
No 475
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.04 E-value=1.5 Score=41.05 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHHHHhhcC---CcEEEEcCCCChHHHH
Q 011188 115 QGWPMALKG---RDLIGIAETGSGKTLA 139 (491)
Q Consensus 115 ~~i~~i~~~---~~~ii~~~TGsGKT~~ 139 (491)
..++.+... +++++.+|+|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334555543 5789999999999974
No 476
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.93 E-value=1.7 Score=38.18 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=42.5
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEeccCCcHHHHHHHHH
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 284 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 284 (491)
..+.+++|+||.-.-+|-.....+..++..+++.-+.++||.-.-++++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 456789999999987777678888889999988777888887766667666654
No 477
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.88 E-value=0.55 Score=49.43 Aligned_cols=39 Identities=38% Similarity=0.482 Sum_probs=26.3
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEE
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 269 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 269 (491)
+++-.++|+|||..-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 445578999999988887666677776665555543333
No 478
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.86 E-value=1.9 Score=41.90 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=27.1
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcCCCCceEEecc
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 272 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 272 (491)
....+++||||+|+|.... ...+.+.++..++...+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999987543 4455566666555555555443
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.82 E-value=1.5 Score=43.38 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVN 149 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~ 149 (491)
.+++.||.|+|||..+.. +...+.
T Consensus 41 ~~L~~G~~G~GKt~~a~~-la~~l~ 64 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI-LARKIN 64 (367)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 588999999999976443 344433
No 480
>COG1485 Predicted ATPase [General function prediction only]
Probab=90.80 E-value=6.3 Score=37.88 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=62.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH
Q 011188 124 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 203 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~ 203 (491)
+.+-+.++.|.|||. ++-++.+...- ..+ .-++.-.-+..+.+++..+-.. .
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~-----~~k----~R~HFh~FM~~vH~~l~~l~g~-----------~------ 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG-----ERK----RRLHFHRFMARVHQRLHTLQGQ-----------T------ 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc-----ccc----ccccHHHHHHHHHHHHHHHcCC-----------C------
Confidence 568899999999997 44344333221 011 2356667777788887776411 0
Q ss_pred HHhhcCCcEEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhh-cCCCCceEEeccCCcHHH
Q 011188 204 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQTLYWSATWPKEV 278 (491)
Q Consensus 204 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 278 (491)
+.+- .+...+ ..+..+++|||+| +.|-+-.-.+..+++. +.....++..|-|.|+++
T Consensus 118 -------dpl~----~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 -------DPLP----PIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CccH----HHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1110 011111 3456789999999 3333323333444433 345788889999988764
No 481
>PRK08006 replicative DNA helicase; Provisional
Probab=90.78 E-value=3.6 Score=41.98 Aligned_cols=114 Identities=16% Similarity=0.043 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 202 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~ 202 (491)
|.=+++.|.+|.|||..++-.+...... .+..|+|++.- .-..|+...+-..... +....+..+.-....
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~-------~g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML-------QDKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHH
Confidence 3447888999999996544433332222 15567777642 2333444333322111 221112222212222
Q ss_pred HH-------HhhcCCcEEEe-----ChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 203 VR-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 203 ~~-------~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
+. .+....++.|. |+..+.....+.......+++||||=.|.|.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 22 12123455553 3444433332211111257899999999775
No 482
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.74 E-value=0.64 Score=44.59 Aligned_cols=56 Identities=23% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHH-HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 107 FEPTPIQAQGWP-MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 107 ~~~~~~Q~~~i~-~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
..+.+.|..-+- ++..+++++++++||||||.. +.+++..+-. ..+++.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 356666665554 455678999999999999974 5555554433 4456666666655
No 483
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.70 E-value=4.1 Score=41.47 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhHH---Hhh
Q 011188 131 ETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ 207 (491)
Q Consensus 131 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~---~~~ 207 (491)
-.++||+..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++. ...++.+..++|..+..+... .++
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 45778887767755544443 236779999999999999999887 344688889999866544433 333
Q ss_pred c-CCcEEEeChHHHHHHHhccCccccCccEEEEccccc
Q 011188 208 K-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 244 (491)
Q Consensus 208 ~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~ 244 (491)
. ...++||| +.+.++ .++..+.+||-++.-.
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 3 47899999 677664 7789999999977664
No 484
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.68 E-value=0.26 Score=49.93 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=28.7
Q ss_pred eChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 215 ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 215 ~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
-+|+-..++-.. .....+.++.|+|||-...+.+.+..+-+.++..
T Consensus 571 LS~GEqQRLa~A-RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 571 LSPGEQQRLAFA-RLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred cCHHHHHHHHHH-HHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 445444333222 2234567899999999888776666666666554
No 485
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.67 E-value=0.6 Score=47.56 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=24.3
Q ss_pred ccCccEEEEccccccccCCcHHHHHHHHhhcC-CCCceEEeccC
Q 011188 231 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSAT 273 (491)
Q Consensus 231 l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 273 (491)
..++++.||||+|.+....| ..+++.+. +...++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhcccccCccCeEEEEec
Confidence 56889999999998764443 44444443 22344444455
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.66 E-value=0.35 Score=33.71 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHV 148 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l 148 (491)
+...++.+++|+|||.. +-+++.+
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 34699999999999984 3344443
No 487
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.65 E-value=0.39 Score=41.97 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred cCccEEEEccccccccCCcHHHHHHHHhhcCCC-CceEEecc
Q 011188 232 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD-RQTLYWSA 272 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~~~~~~~~~~i~~~~~~~-~~~i~~SA 272 (491)
.+.+++++||...-++......+...+..+... .++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 466899999999988876666666666655333 55565554
No 488
>PRK05748 replicative DNA helicase; Provisional
Probab=90.56 E-value=3.1 Score=42.38 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCCCCceEEEEECCccChh
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIKSTCIYGGVPKGP 201 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~~~~~v~~~~~g~~~~~ 201 (491)
|.-+++.|.||.|||..++- ++.++... .+..+++++.- +-..|+...+- ..+ . +....+..+.-...
T Consensus 203 G~livIaarpg~GKT~~al~-ia~~~a~~------~g~~v~~fSlE-ms~~~l~~R~l~~~~-~--v~~~~i~~~~l~~~ 271 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALN-IAQNVATK------TDKNVAIFSLE-MGAESLVMRMLCAEG-N--IDAQRLRTGQLTDD 271 (448)
T ss_pred CceEEEEeCCCCCchHHHHH-HHHHHHHh------CCCeEEEEeCC-CCHHHHHHHHHHHhc-C--CCHHHhhcCCCCHH
Confidence 34588899999999965443 44443211 25567777532 33344444442 222 1 11111111221122
Q ss_pred hHH-------HhhcCCcEEEe-----ChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 202 QVR-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 202 ~~~-------~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
.+. .+. +.++.|. |+..+...+........++++||||=.|.+.
T Consensus 272 e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 221 222 2345553 3444444332211111257899999999875
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.14 E-value=0.64 Score=43.44 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=36.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 185 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 185 (491)
.++.+++.+++|+|||+-.+-.+...+.. +.+|++++-. +...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~~-e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVSTE-ESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 45679999999999996533323333222 5667777654 6667777777766543
No 490
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.12 E-value=0.9 Score=48.06 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHH--HHHHHHHHHHHhcCC
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE--LAVQIQQESTKFGAS 185 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~--L~~q~~~~~~~~~~~ 185 (491)
..++++.|+||+|||..+...+.+.+.. +..++++=|--. |...+...+++.+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~--------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR--------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4679999999999998765434444333 556777777643 777777777776544
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.09 E-value=0.28 Score=42.33 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=17.6
Q ss_pred cCccEEEEcccccccc--CCcHHHHHHHHh
Q 011188 232 RRVTYLVLDEADRMLD--MGFEPQIKKILS 259 (491)
Q Consensus 232 ~~~~~lIiDEah~~~~--~~~~~~~~~i~~ 259 (491)
.+-+++|+||+=.|-. .+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 4668999999997654 347777777765
No 492
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.98 E-value=2.8 Score=40.60 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHhhcCCc------EEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 011188 108 EPTPIQAQGWPMALKGRD------LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 181 (491)
Q Consensus 108 ~~~~~Q~~~i~~i~~~~~------~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 181 (491)
..+..|...+..++...+ +++.|.+|+|||.+ +..++.+. +...+++++-. +--++.-+.+
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~----------n~~~vw~n~~e--cft~~~lle~ 75 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL----------NLENVWLNCVE--CFTYAILLEK 75 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc----------CCcceeeehHH--hccHHHHHHH
Confidence 567789999988887654 48889999999985 22233332 12245655532 1112222222
Q ss_pred hcCCCCceEEEEECCccChhhHHHhhcCCcEEEeChHH---HHHHHhcc--CccccCccEEEEccccccccCC--cHHHH
Q 011188 182 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR---LIDMLESH--NTNLRRVTYLVLDEADRMLDMG--FEPQI 254 (491)
Q Consensus 182 ~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~Iiv~T~~~---l~~~l~~~--~~~l~~~~~lIiDEah~~~~~~--~~~~~ 254 (491)
+....+ .. +.+.. -+=.+.+. +...+.+. ..+....-++|+|-|+.+-+++ ..+.+
T Consensus 76 IL~~~~-----~~---d~dg~---------~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 76 ILNKSQ-----LA---DKDGD---------KVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred HHHHhc-----cC---CCchh---------hhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 221111 00 00000 00011111 22222221 1112345589999999998876 22344
Q ss_pred HHHHhhcCCCCceEEeccCCcHHHHHHHHHHccCCcEEEecC
Q 011188 255 KKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 296 (491)
Q Consensus 255 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
-++-..++...-.+.+|+++.+... ..+.-..+++.+.+..
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQY-LINTGTLEIVVLHFPQ 179 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHHh-hcccCCCCceEEecCC
Confidence 4444555555667888999765331 1112233455554443
No 493
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.91 E-value=1.3 Score=43.48 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 011188 122 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 150 (491)
Q Consensus 122 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 150 (491)
.|+..+|.+|.|+|||+.+.. +...+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~-Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQN-IANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHH-HHHHHHh
Confidence 578999999999999975333 4444443
No 494
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.88 E-value=0.83 Score=44.35 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 011188 124 RDLIGIAETGSGKTLAYL 141 (491)
Q Consensus 124 ~~~ii~~~TGsGKT~~~~ 141 (491)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998644
No 495
>PRK14701 reverse gyrase; Provisional
Probab=89.84 E-value=1.2 Score=52.29 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=53.3
Q ss_pred cCCeEEEEeCCcccHHHHHHHHHhC------CCceEEEcCCCCHHHHHHHHHHHhCCCCcEEEEecc
Q 011188 330 DGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 390 (491)
Q Consensus 330 ~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~i~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 390 (491)
.+.++||.+|++.-+.++++.|+.. +..+..+||+++..++..+++.+.+|+.+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988763 456788999999999999999999999999999964
No 496
>PRK08760 replicative DNA helicase; Provisional
Probab=89.82 E-value=2.2 Score=43.68 Aligned_cols=110 Identities=18% Similarity=0.077 Sum_probs=52.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCccChhhH-
Q 011188 125 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV- 203 (491)
Q Consensus 125 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~~g~~~~~~~- 203 (491)
=++|.|.+|.|||..++-.+...... .+..|+|++.- .-..|+...+.......... .+..+.-....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~-------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~--~i~~g~l~~~e~~ 300 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIK-------SKKGVAVFSME-MSASQLAMRLISSNGRINAQ--RLRTGALEDEDWA 300 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHh-------cCCceEEEecc-CCHHHHHHHHHHhhCCCcHH--HHhcCCCCHHHHH
Confidence 47888999999997644433332222 14557777542 33345555544332222111 111121111222
Q ss_pred ------HHhhcCCcEEEe-----ChHHHHHHHhccCccccCccEEEEccccccc
Q 011188 204 ------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 246 (491)
Q Consensus 204 ------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~ 246 (491)
..+. ...+.|. |++.+...+..... -..+++||||=.+.|.
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1222 2345444 34444433322111 1357899999998774
No 497
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.62 E-value=1.2 Score=46.73 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccH--HHHHHHHHHHHHhcCCCC
Q 011188 123 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR--ELAVQIQQESTKFGASSK 187 (491)
Q Consensus 123 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~--~L~~q~~~~~~~~~~~~~ 187 (491)
..++++.++||+|||..+...+.+.+.. +..++++=|-. ++...+...+++.+....
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~~~ 238 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRLDE 238 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCCCc
Confidence 4679999999999998766644444443 56788888865 677777777777765433
No 498
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.56 E-value=0.99 Score=43.87 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCCCCCCCCEEEEEcccHHH
Q 011188 98 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 171 (491)
Q Consensus 98 ~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 171 (491)
+..+.+.|+ +.+.+.+.+..+. .+++++++++||+|||.. +-.++..+. ...+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVA--------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCC--------CCCcEEEECCccee
Confidence 344444544 4566777776554 456899999999999974 222333221 13456777777676
No 499
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=4.5 Score=37.82 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=46.2
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHhhcCC-----cEEEEcCCCChHHHHHHHHHHHHhhcCCCCCC
Q 011188 82 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGR-----DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 156 (491)
Q Consensus 82 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~-----~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~ 156 (491)
.+|...|++..=-+...++|+..=+... -+|.+..|+ .+++-+|+|+||+..+-..+-
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPI------KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT----------- 188 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPI------KFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT----------- 188 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecc------cchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh-----------
Confidence 4455678876323334445543321111 134556664 489999999999974322111
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHh
Q 011188 157 GDGPIVLVLAPTRELAVQIQQESTKF 182 (491)
Q Consensus 157 ~~~~~vlil~Pt~~L~~q~~~~~~~~ 182 (491)
......+-+.+..|+..|.-+-.++
T Consensus 189 -EAnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 189 -EANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred -hcCCceEEeehHHHHHHHhccHHHH
Confidence 1224677777888877665544443
No 500
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=1.1 Score=46.82 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=30.7
Q ss_pred EEEeChHHHHHHHhccCccccCccEEEEccccccccCCcHHHHHHHHhhc
Q 011188 212 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 261 (491)
Q Consensus 212 Iiv~T~~~l~~~l~~~~~~l~~~~~lIiDEah~~~~~~~~~~~~~i~~~~ 261 (491)
-+=+-|+++..-+.+-.. .--++++||+|.|.....+..-..++.-+
T Consensus 399 YIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 445679999887765332 12379999999998765444444444444
Done!